Query 040367
Match_columns 400
No_of_seqs 635 out of 1513
Neff 12.2
Searched_HMMs 29240
Date Mon Mar 25 12:16:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040367.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040367hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.2E-36 4.2E-41 278.5 38.1 374 15-399 82-525 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.2E-35 7.5E-40 270.2 43.5 384 3-398 106-592 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-30 5.4E-35 225.2 43.6 356 24-390 6-372 (388)
4 4g26_A Pentatricopeptide repea 100.0 4.4E-33 1.5E-37 244.8 24.5 208 162-369 7-224 (501)
5 4g26_A Pentatricopeptide repea 100.0 1.3E-32 4.3E-37 241.9 25.7 203 197-399 7-219 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 2.1E-29 7.3E-34 218.1 41.5 357 2-369 20-387 (388)
7 2y4t_A DNAJ homolog subfamily 100.0 3.2E-26 1.1E-30 202.2 39.3 356 4-381 15-406 (450)
8 2gw1_A Mitochondrial precursor 100.0 1.1E-25 3.8E-30 202.2 40.8 360 16-385 5-479 (514)
9 2y4t_A DNAJ homolog subfamily 100.0 8.4E-25 2.9E-29 193.1 38.9 337 36-391 11-363 (450)
10 3fp2_A TPR repeat-containing p 100.0 4.7E-24 1.6E-28 192.7 39.0 362 16-385 24-492 (537)
11 2gw1_A Mitochondrial precursor 99.9 1.6E-23 5.3E-28 188.2 34.7 326 52-385 6-445 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 1.8E-22 6.3E-27 172.5 38.8 201 16-244 2-217 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 6.5E-22 2.2E-26 169.1 40.3 323 51-391 2-340 (359)
14 3fp2_A TPR repeat-containing p 99.9 1.6E-21 5.4E-26 176.1 38.2 324 52-384 25-457 (537)
15 3hym_B Cell division cycle pro 99.9 1.9E-21 6.5E-26 164.2 33.1 293 50-372 20-322 (330)
16 3hym_B Cell division cycle pro 99.9 2.1E-21 7.3E-26 163.9 33.4 292 15-336 20-321 (330)
17 2xm6_A Protein corresponding t 99.9 3.4E-19 1.2E-23 158.7 47.7 346 15-387 37-435 (490)
18 2ooe_A Cleavage stimulation fa 99.9 2.3E-19 7.9E-24 161.4 44.4 371 3-384 1-454 (530)
19 1fch_A Peroxisomal targeting s 99.9 1.5E-21 5.2E-26 167.5 25.9 315 29-382 13-357 (368)
20 1fch_A Peroxisomal targeting s 99.9 1.9E-20 6.5E-25 160.7 27.8 309 26-347 34-357 (368)
21 2xm6_A Protein corresponding t 99.9 4.9E-18 1.7E-22 151.2 42.8 351 3-383 65-466 (490)
22 4eqf_A PEX5-related protein; a 99.9 5.4E-21 1.8E-25 163.9 22.4 266 86-380 64-352 (365)
23 4eqf_A PEX5-related protein; a 99.9 3E-20 1E-24 159.2 26.1 275 18-345 66-352 (365)
24 2ooe_A Cleavage stimulation fa 99.9 1E-17 3.4E-22 150.7 40.5 374 2-384 33-492 (530)
25 4g1t_A Interferon-induced prot 99.9 1.1E-18 3.6E-23 155.0 33.8 363 15-393 49-469 (472)
26 3cv0_A Peroxisome targeting si 99.9 1.3E-19 4.5E-24 152.7 25.7 268 87-383 21-314 (327)
27 3cv0_A Peroxisome targeting si 99.9 3.3E-19 1.1E-23 150.2 27.2 281 16-347 20-313 (327)
28 3mkr_A Coatomer subunit epsilo 99.9 7.6E-19 2.6E-23 144.7 26.5 160 180-349 101-264 (291)
29 3mkr_A Coatomer subunit epsilo 99.8 4.3E-18 1.5E-22 140.1 28.0 275 24-342 6-287 (291)
30 1b89_A Protein (clathrin heavy 99.8 8.8E-19 3E-23 147.5 20.0 267 16-342 31-304 (449)
31 1b89_A Protein (clathrin heavy 99.8 1.9E-19 6.5E-24 151.5 15.5 283 28-377 14-304 (449)
32 2pl2_A Hypothetical conserved 99.8 2.3E-17 8E-22 129.9 23.2 200 177-382 2-212 (217)
33 3uq3_A Heat shock protein STI1 99.8 9.1E-17 3.1E-21 130.4 26.2 227 121-384 4-236 (258)
34 3spa_A Mtrpol, DNA-directed RN 99.8 4.8E-19 1.7E-23 161.1 12.6 120 249-368 126-249 (1134)
35 4g1t_A Interferon-induced prot 99.8 4.2E-15 1.4E-19 131.8 35.9 306 50-383 49-400 (472)
36 2pl2_A Hypothetical conserved 99.8 8.8E-17 3E-21 126.6 22.2 199 14-241 2-211 (217)
37 3uq3_A Heat shock protein STI1 99.8 3.5E-16 1.2E-20 126.9 25.3 224 53-348 6-235 (258)
38 3spa_A Mtrpol, DNA-directed RN 99.8 1.7E-18 5.8E-23 157.6 10.9 152 213-369 125-286 (1134)
39 3u4t_A TPR repeat-containing p 99.8 6.5E-16 2.2E-20 126.5 25.5 235 18-279 4-250 (272)
40 2ho1_A Type 4 fimbrial biogene 99.8 1.4E-15 4.9E-20 122.9 26.7 213 180-398 37-250 (252)
41 1ouv_A Conserved hypothetical 99.8 9.3E-15 3.2E-19 119.6 31.4 224 121-385 5-252 (273)
42 2vq2_A PILW, putative fimbrial 99.8 2E-15 6.9E-20 119.7 26.6 217 177-398 5-223 (225)
43 2h6f_A Protein farnesyltransfe 99.7 8.6E-16 2.9E-20 130.7 24.7 117 19-138 99-216 (382)
44 3u4t_A TPR repeat-containing p 99.7 2E-15 6.9E-20 123.5 26.1 242 122-392 3-256 (272)
45 3e4b_A ALGK; tetratricopeptide 99.7 1.9E-15 6.3E-20 132.6 27.2 337 22-388 8-391 (452)
46 2h6f_A Protein farnesyltransfe 99.7 4.3E-15 1.5E-19 126.4 28.1 248 52-330 97-363 (382)
47 1ouv_A Conserved hypothetical 99.7 1.8E-14 6E-19 118.0 30.8 223 16-279 5-251 (273)
48 1xi4_A Clathrin heavy chain; a 99.7 5.4E-14 1.9E-18 132.6 36.9 318 15-383 983-1308(1630)
49 2q7f_A YRRB protein; TPR, prot 99.7 9.8E-16 3.3E-20 123.1 21.9 202 178-384 21-222 (243)
50 1xnf_A Lipoprotein NLPI; TPR, 99.7 3.7E-16 1.3E-20 128.1 19.5 247 99-378 17-269 (275)
51 3sf4_A G-protein-signaling mod 99.7 4.9E-16 1.7E-20 135.0 20.6 302 51-371 8-363 (406)
52 4e6h_A MRNA 3'-END-processing 99.7 2E-13 6.7E-18 123.9 37.4 145 3-150 54-222 (679)
53 1xnf_A Lipoprotein NLPI; TPR, 99.7 2E-15 6.9E-20 123.7 22.4 245 66-343 19-269 (275)
54 4a1s_A PINS, partner of inscut 99.7 7E-16 2.4E-20 134.3 19.9 277 89-384 50-372 (411)
55 3sf4_A G-protein-signaling mod 99.7 1.9E-15 6.6E-20 131.2 22.6 281 84-383 6-335 (406)
56 2ho1_A Type 4 fimbrial biogene 99.7 3E-14 1E-18 115.1 28.0 202 52-279 37-238 (252)
57 2q7f_A YRRB protein; TPR, prot 99.7 3E-15 1E-19 120.2 21.6 201 16-244 22-222 (243)
58 4a1s_A PINS, partner of inscut 99.7 1.8E-15 6.1E-20 131.7 21.6 278 53-349 49-372 (411)
59 2vq2_A PILW, putative fimbrial 99.7 3E-14 1E-18 112.8 26.4 205 119-349 5-211 (225)
60 1xi4_A Clathrin heavy chain; a 99.7 4.1E-13 1.4E-17 126.8 36.8 312 29-379 1088-1440(1630)
61 3ro2_A PINS homolog, G-protein 99.7 3.3E-15 1.1E-19 126.1 21.2 277 89-384 7-332 (338)
62 3ro2_A PINS homolog, G-protein 99.7 4.1E-15 1.4E-19 125.5 20.5 275 56-349 9-332 (338)
63 4abn_A Tetratricopeptide repea 99.7 1.5E-14 5.1E-19 127.7 24.5 215 161-381 84-318 (474)
64 3ulq_A Response regulator aspa 99.7 1.9E-14 6.6E-19 123.9 24.1 300 27-348 22-367 (383)
65 3vtx_A MAMA; tetratricopeptide 99.7 4.4E-14 1.5E-18 108.2 23.4 173 214-392 4-176 (184)
66 3ulq_A Response regulator aspa 99.7 5.1E-14 1.8E-18 121.2 25.3 298 62-383 22-367 (383)
67 2ond_A Cleavage stimulation fa 99.7 1.7E-13 5.7E-18 114.1 26.9 218 162-384 33-270 (308)
68 3e4b_A ALGK; tetratricopeptide 99.7 1.2E-13 4E-18 121.2 26.9 307 57-386 8-353 (452)
69 4e6h_A MRNA 3'-END-processing 99.6 5.2E-12 1.8E-16 114.7 37.2 385 2-393 87-577 (679)
70 3vtx_A MAMA; tetratricopeptide 99.6 1.3E-13 4.4E-18 105.6 22.5 167 179-349 4-170 (184)
71 2ond_A Cleavage stimulation fa 99.6 2.1E-12 7E-17 107.5 30.2 226 104-349 33-270 (308)
72 3nf1_A KLC 1, kinesin light ch 99.6 5.9E-15 2E-19 123.2 14.2 177 52-244 27-224 (311)
73 3nf1_A KLC 1, kinesin light ch 99.6 1.6E-14 5.5E-19 120.5 16.2 177 86-278 26-223 (311)
74 4abn_A Tetratricopeptide repea 99.6 1.3E-13 4.5E-18 121.7 21.2 214 102-345 83-317 (474)
75 3q15_A PSP28, response regulat 99.6 6.7E-13 2.3E-17 114.0 24.5 247 15-278 8-289 (378)
76 1hz4_A MALT regulatory protein 99.6 1.1E-11 3.7E-16 106.3 31.0 278 56-349 18-322 (373)
77 3q15_A PSP28, response regulat 99.6 5.7E-13 1.9E-17 114.4 22.7 313 49-383 7-364 (378)
78 1hz4_A MALT regulatory protein 99.6 6.4E-12 2.2E-16 107.7 29.0 275 90-383 17-321 (373)
79 3as5_A MAMA; tetratricopeptide 99.5 8.1E-13 2.8E-17 101.1 17.5 162 218-383 11-172 (186)
80 4i17_A Hypothetical protein; T 99.5 2.6E-12 9E-17 101.9 21.0 204 177-394 4-217 (228)
81 3edt_B KLC 2, kinesin light ch 99.5 3.9E-13 1.3E-17 110.4 15.6 233 134-383 13-280 (283)
82 4gyw_A UDP-N-acetylglucosamine 99.5 1.6E-12 5.5E-17 119.3 20.9 166 179-348 8-173 (723)
83 4i17_A Hypothetical protein; T 99.5 1.3E-11 4.6E-16 97.8 23.7 193 157-361 19-220 (228)
84 3as5_A MAMA; tetratricopeptide 99.5 4.9E-12 1.7E-16 96.6 20.4 166 180-349 8-173 (186)
85 4gyw_A UDP-N-acetylglucosamine 99.5 1.9E-12 6.6E-17 118.8 20.2 168 212-383 6-173 (723)
86 3edt_B KLC 2, kinesin light ch 99.5 2.7E-12 9.2E-17 105.3 17.1 166 63-244 12-198 (283)
87 1qqe_A Vesicular transport pro 99.4 1.5E-10 5E-15 95.4 22.0 178 102-313 32-227 (292)
88 3qky_A Outer membrane assembly 99.4 1.5E-10 5.2E-15 93.8 21.5 171 177-349 12-224 (261)
89 1qqe_A Vesicular transport pro 99.4 3.8E-11 1.3E-15 98.9 18.2 200 187-390 44-273 (292)
90 3mv2_B Coatomer subunit epsilo 99.4 7.9E-10 2.7E-14 89.4 24.5 166 178-349 98-282 (310)
91 3urz_A Uncharacterized protein 99.3 1.1E-10 3.7E-15 91.0 18.1 164 180-348 4-185 (208)
92 2uy1_A Cleavage stimulation fa 99.3 4.4E-08 1.5E-12 86.4 36.5 346 17-383 15-412 (493)
93 3urz_A Uncharacterized protein 99.3 2.2E-10 7.5E-15 89.2 19.1 173 217-396 6-196 (208)
94 3rjv_A Putative SEL1 repeat pr 99.3 7.2E-10 2.5E-14 86.5 22.1 163 215-386 18-199 (212)
95 2fo7_A Synthetic consensus TPR 99.3 2.8E-10 9.6E-15 81.7 18.0 130 252-384 3-132 (136)
96 2fo7_A Synthetic consensus TPR 99.3 1.8E-10 6.3E-15 82.7 16.2 131 18-151 2-132 (136)
97 3mv2_B Coatomer subunit epsilo 99.3 3.9E-09 1.3E-13 85.4 25.2 245 24-315 20-283 (310)
98 3rjv_A Putative SEL1 repeat pr 99.3 1.5E-09 5E-14 84.8 21.4 178 162-351 3-199 (212)
99 3qky_A Outer membrane assembly 99.3 6.5E-10 2.2E-14 90.0 19.4 175 212-390 12-228 (261)
100 2pzi_A Probable serine/threoni 99.3 1E-10 3.5E-15 107.9 16.3 173 191-370 402-583 (681)
101 3dra_A Protein farnesyltransfe 99.3 1.6E-08 5.6E-13 82.6 27.0 230 161-396 49-299 (306)
102 2yhc_A BAMD, UPF0169 lipoprote 99.3 3E-09 1E-13 83.9 21.8 186 179-385 3-214 (225)
103 2pzi_A Probable serine/threoni 99.2 2.5E-10 8.6E-15 105.3 17.2 171 63-262 402-580 (681)
104 2ifu_A Gamma-SNAP; membrane fu 99.2 7.9E-10 2.7E-14 91.8 17.9 187 187-376 43-253 (307)
105 4ga2_A E3 SUMO-protein ligase 99.2 8.7E-11 3E-15 86.1 10.8 81 220-302 36-116 (150)
106 3dra_A Protein farnesyltransfe 99.2 3E-08 1E-12 81.0 26.4 225 28-278 43-286 (306)
107 2yhc_A BAMD, UPF0169 lipoprote 99.2 5.9E-09 2E-13 82.2 21.6 174 157-349 16-213 (225)
108 2r5s_A Uncharacterized protein 99.2 3.5E-10 1.2E-14 85.5 13.8 167 16-208 5-172 (176)
109 2r5s_A Uncharacterized protein 99.2 2.9E-10 1E-14 86.0 13.0 161 183-347 9-171 (176)
110 4ga2_A E3 SUMO-protein ligase 99.2 1.1E-10 3.7E-15 85.6 10.1 143 224-370 6-149 (150)
111 3qou_A Protein YBBN; thioredox 99.2 9.3E-10 3.2E-14 90.3 16.6 161 181-345 118-280 (287)
112 2vsy_A XCC0866; transferase, g 99.2 1.4E-09 4.8E-14 98.6 18.4 154 193-350 2-158 (568)
113 3qou_A Protein YBBN; thioredox 99.2 1.5E-09 5E-14 89.1 16.8 168 212-383 114-283 (287)
114 2uy1_A Cleavage stimulation fa 99.2 1.5E-07 5.1E-12 83.1 30.2 321 29-381 6-380 (493)
115 2vsy_A XCC0866; transferase, g 99.1 2.8E-09 9.6E-14 96.6 18.5 154 159-316 3-159 (568)
116 3u3w_A Transcriptional activat 99.1 4.6E-08 1.6E-12 80.5 23.9 207 168-383 34-265 (293)
117 2ifu_A Gamma-SNAP; membrane fu 99.1 1.8E-09 6.3E-14 89.5 15.5 198 159-382 5-222 (307)
118 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1.9E-08 6.5E-13 78.5 17.0 128 216-349 7-150 (213)
119 3u3w_A Transcriptional activat 99.0 1.6E-07 5.6E-12 77.2 23.4 164 185-348 80-265 (293)
120 4gco_A Protein STI-1; structur 99.0 5E-09 1.7E-13 74.1 12.2 111 16-129 12-122 (126)
121 3gyz_A Chaperone protein IPGC; 99.0 2.5E-09 8.7E-14 77.9 10.9 101 52-154 36-136 (151)
122 1hh8_A P67PHOX, NCF-2, neutrop 99.0 6.6E-08 2.2E-12 75.4 19.6 129 182-316 8-152 (213)
123 1a17_A Serine/threonine protei 99.0 3.1E-08 1E-12 73.8 16.9 128 252-382 15-144 (166)
124 2qfc_A PLCR protein; TPR, HTH, 99.0 1.1E-07 3.7E-12 78.3 21.4 167 216-382 76-264 (293)
125 2c2l_A CHIP, carboxy terminus 99.0 4.9E-09 1.7E-13 85.7 12.5 194 179-383 3-198 (281)
126 4gco_A Protein STI-1; structur 99.0 2.7E-08 9.4E-13 70.2 14.8 91 256-348 19-109 (126)
127 3q7a_A Farnesyltransferase alp 99.0 6E-07 2E-11 74.2 24.3 223 161-389 70-335 (349)
128 2e2e_A Formate-dependent nitri 99.0 1.5E-08 5.1E-13 76.6 13.9 125 27-154 20-147 (177)
129 3gyz_A Chaperone protein IPGC; 99.0 1.8E-09 6.1E-14 78.7 8.3 94 253-348 39-132 (151)
130 3gw4_A Uncharacterized protein 99.0 1.4E-08 4.8E-13 78.5 13.7 120 192-312 4-134 (203)
131 2lni_A Stress-induced-phosphop 99.0 2.5E-08 8.4E-13 71.2 13.8 120 14-136 13-132 (133)
132 1na0_A Designed protein CTPR3; 99.0 4.4E-08 1.5E-12 68.9 15.0 116 17-135 9-124 (125)
133 1a17_A Serine/threonine protei 99.0 8.7E-08 3E-12 71.3 17.3 127 218-347 16-144 (166)
134 2c2l_A CHIP, carboxy terminus 99.0 3.7E-09 1.3E-13 86.4 10.4 100 15-116 2-101 (281)
135 2vgx_A Chaperone SYCD; alterna 98.9 5.5E-09 1.9E-13 76.2 9.6 99 249-349 20-118 (148)
136 3q7a_A Farnesyltransferase alp 98.9 2.5E-06 8.6E-11 70.5 26.3 44 318-361 300-343 (349)
137 2vgx_A Chaperone SYCD; alterna 98.9 1.6E-08 5.4E-13 73.8 11.9 109 4-116 10-118 (148)
138 2vyi_A SGTA protein; chaperone 98.9 2.7E-08 9.1E-13 70.7 12.9 121 15-138 10-130 (131)
139 2e2e_A Formate-dependent nitri 98.9 9.6E-09 3.3E-13 77.6 10.8 122 225-349 20-144 (177)
140 4f3v_A ESX-1 secretion system 98.9 7.8E-08 2.7E-12 76.8 16.2 197 192-396 18-247 (282)
141 1na0_A Designed protein CTPR3; 98.9 1E-07 3.5E-12 66.9 15.3 95 252-348 11-105 (125)
142 2qfc_A PLCR protein; TPR, HTH, 98.9 3.6E-07 1.2E-11 75.1 20.6 168 180-348 75-265 (293)
143 1p5q_A FKBP52, FK506-binding p 98.9 1.9E-08 6.4E-13 84.5 12.9 131 16-148 146-291 (336)
144 2lni_A Stress-induced-phosphop 98.9 6.3E-08 2.2E-12 69.0 14.0 94 253-348 19-112 (133)
145 2vyi_A SGTA protein; chaperone 98.9 8.1E-08 2.8E-12 68.1 14.4 117 251-370 13-129 (131)
146 3gw4_A Uncharacterized protein 98.9 4.3E-08 1.5E-12 75.8 13.7 155 227-382 4-174 (203)
147 2xcb_A PCRH, regulatory protei 98.9 1.5E-08 5.1E-13 73.4 10.1 109 4-116 7-115 (142)
148 1p5q_A FKBP52, FK506-binding p 98.9 1.1E-07 3.6E-12 79.9 16.4 87 286-374 197-283 (336)
149 2xcb_A PCRH, regulatory protei 98.8 2.9E-08 9.8E-13 71.9 10.1 97 251-349 19-115 (142)
150 4gcn_A Protein STI-1; structur 98.8 1.1E-07 3.7E-12 67.2 12.7 60 253-313 11-70 (127)
151 3upv_A Heat shock protein STI1 98.8 1.2E-07 4E-12 67.0 12.8 95 252-348 6-100 (126)
152 3upv_A Heat shock protein STI1 98.8 1.7E-07 5.9E-12 66.1 13.2 99 16-116 3-101 (126)
153 4gcn_A Protein STI-1; structur 98.8 1.8E-07 6.2E-12 66.1 12.9 96 287-383 10-111 (127)
154 1elw_A TPR1-domain of HOP; HOP 98.8 3.3E-07 1.1E-11 63.5 14.1 112 16-130 3-114 (118)
155 4f3v_A ESX-1 secretion system 98.8 5E-07 1.7E-11 72.2 16.2 187 29-244 18-237 (282)
156 3dss_A Geranylgeranyl transfer 98.8 4.8E-05 1.6E-09 62.6 28.8 221 162-391 47-309 (331)
157 2fbn_A 70 kDa peptidylprolyl i 98.8 3.1E-08 1.1E-12 76.3 8.8 96 217-313 40-150 (198)
158 1elw_A TPR1-domain of HOP; HOP 98.7 8.3E-07 2.8E-11 61.4 15.2 90 256-347 10-99 (118)
159 2kck_A TPR repeat; tetratricop 98.7 2.1E-07 7.2E-12 63.9 11.7 101 15-117 4-107 (112)
160 2fbn_A 70 kDa peptidylprolyl i 98.7 4.9E-07 1.7E-11 69.5 14.6 156 225-384 14-186 (198)
161 2dba_A Smooth muscle cell asso 98.7 9.3E-07 3.2E-11 64.2 15.1 112 15-130 26-141 (148)
162 2kck_A TPR repeat; tetratricop 98.7 3.3E-07 1.1E-11 62.8 12.0 99 284-384 5-106 (112)
163 4b4t_Q 26S proteasome regulato 98.7 3E-06 1E-10 73.9 20.6 195 188-382 12-243 (434)
164 3q49_B STIP1 homology and U bo 98.7 3.3E-07 1.1E-11 65.6 12.1 100 15-116 7-106 (137)
165 3sz7_A HSC70 cochaperone (SGT) 98.7 9.6E-07 3.3E-11 65.5 15.0 98 215-314 11-108 (164)
166 3q49_B STIP1 homology and U bo 98.7 1.3E-06 4.4E-11 62.5 15.2 96 250-347 9-104 (137)
167 3sz7_A HSC70 cochaperone (SGT) 98.7 7.2E-07 2.5E-11 66.2 14.1 99 16-116 10-108 (164)
168 1elr_A TPR2A-domain of HOP; HO 98.7 1.9E-07 6.4E-12 66.2 10.2 114 16-132 3-122 (131)
169 1elr_A TPR2A-domain of HOP; HO 98.7 4.8E-07 1.7E-11 64.0 11.9 96 253-349 7-108 (131)
170 3dss_A Geranylgeranyl transfer 98.6 0.00012 4.1E-09 60.3 28.3 172 28-227 40-239 (331)
171 1hxi_A PEX5, peroxisome target 98.6 5.9E-07 2E-11 62.7 11.4 94 288-383 20-113 (121)
172 1hxi_A PEX5, peroxisome target 98.6 5.8E-07 2E-11 62.8 11.4 96 19-116 19-114 (121)
173 4b4t_Q 26S proteasome regulato 98.6 3.5E-06 1.2E-10 73.5 18.7 200 96-313 13-244 (434)
174 2dba_A Smooth muscle cell asso 98.6 3E-06 1E-10 61.4 15.4 93 253-348 31-127 (148)
175 3ro3_A PINS homolog, G-protein 98.6 6.9E-07 2.4E-11 65.9 10.9 131 253-383 12-157 (164)
176 1wao_1 Serine/threonine protei 98.6 2.7E-07 9.1E-12 81.3 9.9 126 18-146 7-134 (477)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 6E-07 2E-11 78.7 11.3 125 16-143 267-406 (457)
178 3rkv_A Putative peptidylprolyl 98.5 2E-06 6.8E-11 63.6 12.3 99 250-349 11-126 (162)
179 3k9i_A BH0479 protein; putativ 98.5 2E-07 6.9E-12 64.8 6.5 86 30-116 3-90 (117)
180 3ro3_A PINS homolog, G-protein 98.5 1.4E-06 4.6E-11 64.3 11.4 97 252-348 51-157 (164)
181 2xev_A YBGF; tetratricopeptide 98.5 7.5E-06 2.6E-10 57.7 14.8 92 256-349 8-105 (129)
182 1wao_1 Serine/threonine protei 98.5 5.3E-07 1.8E-11 79.4 10.3 119 224-345 15-135 (477)
183 2xev_A YBGF; tetratricopeptide 98.5 7.2E-06 2.5E-10 57.8 14.1 97 19-117 4-106 (129)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 5E-06 1.7E-10 72.9 15.8 131 215-347 268-413 (457)
185 1ihg_A Cyclophilin 40; ppiase 98.5 3E-06 1E-10 71.9 14.0 91 284-376 272-362 (370)
186 1klx_A Cysteine rich protein B 98.4 1.3E-05 4.3E-10 57.3 14.1 110 265-385 10-127 (138)
187 3k9i_A BH0479 protein; putativ 98.4 6.8E-07 2.3E-11 62.0 7.1 86 263-349 3-90 (117)
188 3rkv_A Putative peptidylprolyl 98.4 5.7E-06 2E-10 61.1 12.5 100 215-315 11-127 (162)
189 1ihg_A Cyclophilin 40; ppiase 98.4 8E-06 2.7E-10 69.3 14.2 122 218-341 226-362 (370)
190 2hr2_A Hypothetical protein; a 98.4 6.8E-06 2.3E-10 59.2 11.4 62 322-383 59-130 (159)
191 3n71_A Histone lysine methyltr 98.4 3.4E-06 1.2E-10 73.9 11.4 132 96-243 318-463 (490)
192 2if4_A ATFKBP42; FKBP-like, al 98.3 2.2E-06 7.5E-11 71.9 9.7 129 16-148 178-325 (338)
193 3n71_A Histone lysine methyltr 98.3 6.7E-06 2.3E-10 72.1 12.6 132 61-208 318-463 (490)
194 1dce_A Protein (RAB geranylger 98.3 0.00014 4.8E-09 65.3 20.9 173 195-372 44-243 (567)
195 2hr2_A Hypothetical protein; a 98.3 1.7E-05 5.7E-10 57.2 12.0 97 54-151 13-131 (159)
196 2if4_A ATFKBP42; FKBP-like, al 98.3 5.1E-06 1.7E-10 69.7 10.3 148 181-349 180-328 (338)
197 1dce_A Protein (RAB geranylger 98.3 0.00017 5.9E-09 64.8 20.4 172 161-337 45-243 (567)
198 1klx_A Cysteine rich protein B 98.2 4E-05 1.4E-09 54.7 13.2 110 230-350 10-127 (138)
199 2kat_A Uncharacterized protein 98.1 2.3E-05 7.7E-10 54.0 9.6 79 35-115 3-81 (115)
200 1zu2_A Mitochondrial import re 98.1 1.6E-05 5.6E-10 57.1 8.7 87 261-349 13-120 (158)
201 2kat_A Uncharacterized protein 98.1 2.9E-05 1E-09 53.4 9.9 79 268-348 3-81 (115)
202 2l6j_A TPR repeat-containing p 98.1 3.7E-06 1.3E-10 57.5 4.9 63 53-116 5-67 (111)
203 1zu2_A Mitochondrial import re 98.1 2E-05 6.9E-10 56.6 8.5 86 227-314 14-120 (158)
204 2l6j_A TPR repeat-containing p 98.0 3.6E-05 1.2E-09 52.4 8.4 60 253-313 7-66 (111)
205 1na3_A Designed protein CTPR2; 98.0 0.00012 4E-09 47.6 10.6 77 54-132 11-87 (91)
206 1na3_A Designed protein CTPR2; 98.0 0.00012 4.2E-09 47.5 10.7 60 288-348 12-71 (91)
207 3ma5_A Tetratricopeptide repea 97.9 5.9E-05 2E-09 50.3 7.2 65 16-81 6-70 (100)
208 3ly7_A Transcriptional activat 97.8 0.00096 3.3E-08 55.3 15.6 72 318-393 275-346 (372)
209 3ma5_A Tetratricopeptide repea 97.8 0.00011 3.9E-09 48.9 8.1 64 51-115 6-69 (100)
210 3qww_A SET and MYND domain-con 97.6 0.00025 8.5E-09 61.1 9.4 94 99-208 310-410 (433)
211 3qwp_A SET and MYND domain-con 97.5 0.00048 1.7E-08 59.4 10.0 99 94-208 294-399 (429)
212 3qwp_A SET and MYND domain-con 97.5 0.0011 3.9E-08 57.1 12.0 114 58-187 293-420 (429)
213 1pc2_A Mitochondria fission pr 97.5 0.0013 4.5E-08 46.7 9.9 79 303-383 16-99 (152)
214 3ly7_A Transcriptional activat 97.5 0.0039 1.3E-07 51.7 14.2 134 15-151 192-339 (372)
215 3qww_A SET and MYND domain-con 97.5 0.00031 1.1E-08 60.5 7.8 85 159-243 312-410 (433)
216 2kc7_A BFR218_protein; tetratr 97.4 0.00089 3E-08 44.2 7.7 56 293-349 8-64 (99)
217 2kc7_A BFR218_protein; tetratr 97.4 0.00093 3.2E-08 44.1 7.7 57 257-314 7-64 (99)
218 3bee_A Putative YFRE protein; 97.2 0.0045 1.5E-07 40.2 9.2 65 249-314 5-72 (93)
219 2v5f_A Prolyl 4-hydroxylase su 97.2 0.0043 1.5E-07 41.4 9.2 67 283-349 3-75 (104)
220 3mkq_A Coatomer beta'-subunit; 97.2 0.086 2.9E-06 49.9 21.5 167 24-239 606-773 (814)
221 3u64_A Protein TP_0956; tetrat 97.1 0.071 2.4E-06 42.5 18.2 90 266-357 179-279 (301)
222 3mkq_A Coatomer beta'-subunit; 97.1 0.017 5.7E-07 54.8 15.8 45 261-311 663-707 (814)
223 3bee_A Putative YFRE protein; 97.1 0.016 5.6E-07 37.5 11.0 68 49-117 3-73 (93)
224 3u64_A Protein TP_0956; tetrat 97.1 0.079 2.7E-06 42.2 16.5 94 301-396 179-283 (301)
225 2v5f_A Prolyl 4-hydroxylase su 96.9 0.015 5.1E-07 38.7 10.4 63 18-80 6-74 (104)
226 1pc2_A Mitochondria fission pr 96.9 0.015 5.1E-07 41.4 10.5 82 33-116 14-100 (152)
227 1nzn_A CGI-135 protein, fissio 96.9 0.01 3.4E-07 40.6 9.1 88 300-390 16-107 (126)
228 4h7y_A Dual specificity protei 96.8 0.029 9.8E-07 39.4 10.8 102 249-352 12-126 (161)
229 3mkq_B Coatomer subunit alpha; 96.8 0.085 2.9E-06 38.6 13.9 130 222-381 12-141 (177)
230 3lvg_A Clathrin heavy chain 1; 96.8 0.0014 4.8E-08 55.8 4.9 210 15-235 81-324 (624)
231 4h7y_A Dual specificity protei 96.8 0.032 1.1E-06 39.2 10.6 113 212-327 10-135 (161)
232 3mkq_B Coatomer subunit alpha; 96.8 0.094 3.2E-06 38.3 14.2 130 187-346 12-141 (177)
233 1wy6_A Hypothetical protein ST 96.6 0.096 3.3E-06 36.0 13.3 139 191-351 18-156 (172)
234 3lvg_A Clathrin heavy chain 1; 96.2 1.3E-05 4.6E-10 67.7 -10.5 262 16-305 53-324 (624)
235 1nzn_A CGI-135 protein, fissio 96.0 0.049 1.7E-06 37.2 8.2 85 30-116 14-103 (126)
236 1wy6_A Hypothetical protein ST 95.9 0.24 8.1E-06 34.1 15.4 137 100-246 20-156 (172)
237 4gns_B Protein CSD3, chitin bi 95.8 0.1 3.5E-06 48.1 11.8 127 253-382 251-398 (754)
238 3o48_A Mitochondria fission 1 95.7 0.24 8.1E-06 34.1 10.4 71 318-390 38-111 (134)
239 4fhn_B Nucleoporin NUP120; pro 95.7 1.4 4.7E-05 43.6 19.8 211 92-313 817-1049(1139)
240 2ff4_A Probable regulatory pro 95.4 0.11 3.6E-06 44.3 9.9 55 326-381 177-231 (388)
241 1y8m_A FIS1; mitochondria, unk 95.2 0.48 1.7E-05 33.0 12.4 71 318-390 37-110 (144)
242 2ff4_A Probable regulatory pro 95.2 1.3 4.4E-05 37.6 16.5 71 182-253 173-248 (388)
243 4b4t_P 26S proteasome regulato 95.1 1.5 5E-05 38.0 20.3 187 161-348 32-246 (445)
244 4ady_A RPN2, 26S proteasome re 94.2 4 0.00014 38.8 23.2 171 186-365 496-671 (963)
245 4fhn_B Nucleoporin NUP120; pro 94.2 2.6 9E-05 41.6 17.3 205 21-243 816-1049(1139)
246 4b4t_P 26S proteasome regulato 94.0 2.8 9.4E-05 36.3 19.6 189 194-383 30-246 (445)
247 4gns_B Protein CSD3, chitin bi 94.0 3.8 0.00013 38.0 18.0 54 187-241 344-397 (754)
248 1v54_E Cytochrome C oxidase po 93.5 0.95 3.2E-05 29.3 9.2 63 300-363 25-87 (109)
249 1v54_E Cytochrome C oxidase po 93.0 1.1 3.9E-05 28.9 9.6 47 232-278 27-73 (109)
250 2y69_E Cytochrome C oxidase su 92.3 1.9 6.5E-05 29.6 9.2 59 303-362 71-129 (152)
251 3ffl_A Anaphase-promoting comp 91.4 1.4 5E-05 31.6 8.2 63 18-80 21-91 (167)
252 3ffl_A Anaphase-promoting comp 91.3 2.1 7E-05 30.8 8.9 120 181-313 21-150 (167)
253 2y69_E Cytochrome C oxidase su 91.3 2.5 8.6E-05 29.0 9.6 62 231-293 69-130 (152)
254 3txn_A 26S proteasome regulato 90.7 7 0.00024 33.0 18.3 56 221-276 105-165 (394)
255 3o48_A Mitochondria fission 1 90.2 3.3 0.00011 28.5 11.4 48 105-152 61-108 (134)
256 4b4t_R RPN7, 26S proteasome re 90.1 3.7 0.00013 35.3 11.3 61 19-79 133-195 (429)
257 1qsa_A Protein (soluble lytic 90.1 11 0.00037 34.3 29.0 163 27-205 16-179 (618)
258 4ady_A RPN2, 26S proteasome re 89.6 15 0.0005 35.1 25.7 179 186-370 530-721 (963)
259 1zbp_A Hypothetical protein VP 88.9 2.5 8.5E-05 33.3 8.3 55 294-349 6-60 (273)
260 4b4t_R RPN7, 26S proteasome re 88.1 9.1 0.00031 32.9 12.3 61 217-277 133-195 (429)
261 3esl_A Checkpoint serine/threo 88.1 6.7 0.00023 29.3 10.0 56 298-353 92-148 (202)
262 1zbp_A Hypothetical protein VP 86.8 5.7 0.00019 31.3 9.1 57 24-81 4-60 (273)
263 3lpz_A GET4 (YOR164C homolog); 84.3 16 0.00054 30.0 23.5 195 33-277 12-214 (336)
264 2uwj_G Type III export protein 84.2 6.4 0.00022 25.4 7.4 86 30-126 19-106 (115)
265 2p58_C Putative type III secre 83.6 6.9 0.00023 25.3 8.3 86 30-126 20-107 (116)
266 1y8m_A FIS1; mitochondria, unk 83.1 9.7 0.00033 26.6 13.4 68 49-116 36-106 (144)
267 2uwj_G Type III export protein 82.9 7.4 0.00025 25.1 7.4 77 265-349 21-97 (115)
268 2p58_C Putative type III secre 82.4 7.8 0.00027 25.0 8.1 77 265-349 22-98 (116)
269 3esl_A Checkpoint serine/threo 81.2 15 0.00051 27.5 10.1 73 177-249 74-149 (202)
270 2wpv_A GET4, UPF0363 protein Y 80.7 21 0.00073 29.0 20.5 113 182-309 35-158 (312)
271 4a1g_A Mitotic checkpoint seri 79.7 14 0.00048 26.2 9.1 50 339-388 84-134 (152)
272 2wpv_A GET4, UPF0363 protein Y 78.6 25 0.00086 28.6 20.1 195 33-277 13-215 (312)
273 3lpz_A GET4 (YOR164C homolog); 78.2 27 0.00092 28.7 23.4 188 161-382 12-214 (336)
274 2wvi_A Mitotic checkpoint seri 76.1 19 0.00066 25.9 9.2 53 303-355 78-131 (164)
275 1qsa_A Protein (soluble lytic 72.4 57 0.002 29.6 34.1 177 194-377 228-435 (618)
276 4gq2_M Nucleoporin NUP120; bet 71.4 75 0.0026 30.8 13.2 110 93-209 816-926 (950)
277 4a1g_A Mitotic checkpoint seri 69.5 27 0.00093 24.7 9.9 70 177-249 65-135 (152)
278 1wdy_A 2-5A-dependent ribonucl 69.1 29 0.00099 27.2 8.8 56 22-85 7-65 (285)
279 1k1a_A B-cell lymphoma 3-encod 68.2 28 0.00096 26.5 8.4 185 187-389 13-210 (241)
280 3eiq_C Programmed cell death p 67.1 54 0.0018 27.3 13.3 25 90-114 57-81 (358)
281 4aez_C MAD3, mitotic spindle c 65.9 29 0.00098 26.5 7.3 52 302-353 131-183 (223)
282 3txn_A 26S proteasome regulato 62.0 72 0.0025 27.0 25.3 93 185-277 104-208 (394)
283 2wvi_A Mitotic checkpoint seri 60.7 44 0.0015 24.0 9.6 71 177-250 60-131 (164)
284 1bpo_A Protein (clathrin); cla 60.7 83 0.0028 27.2 10.4 104 31-139 343-446 (494)
285 4aez_C MAD3, mitotic spindle c 59.2 57 0.0019 24.9 8.2 70 177-249 114-184 (223)
286 1wdy_A 2-5A-dependent ribonucl 59.0 14 0.0005 29.0 5.2 54 332-389 191-247 (285)
287 2ion_A PDCD4, programmed cell 58.8 39 0.0013 23.9 6.7 64 253-317 12-77 (152)
288 2d2s_A Exocyst complex compone 58.5 61 0.0021 25.0 10.1 91 255-348 23-119 (235)
289 3mv2_A Coatomer subunit alpha; 58.0 75 0.0026 25.9 9.4 26 325-350 212-237 (325)
290 2xig_A Ferric uptake regulatio 55.2 49 0.0017 23.3 6.7 24 334-357 40-63 (150)
291 2r9g_A AAA ATPase, central reg 54.4 65 0.0022 24.0 9.9 19 192-210 26-44 (204)
292 3eiq_C Programmed cell death p 53.4 97 0.0033 25.8 12.9 26 182-207 56-81 (358)
293 2keb_A DNA polymerase subunit 50.2 48 0.0016 21.3 6.6 31 304-334 28-58 (101)
294 2w57_A Ferric uptake regulatio 49.4 54 0.0018 23.1 6.2 58 276-334 8-66 (150)
295 3kea_A K1L; tropism, ANK repea 49.1 73 0.0025 25.2 7.8 12 332-343 170-181 (285)
296 4ets_A Ferric uptake regulatio 48.9 46 0.0016 23.8 5.8 57 80-137 26-84 (162)
297 2nsz_A Programmed cell death p 47.6 64 0.0022 22.0 8.9 25 253-277 10-34 (129)
298 3eyy_A Putative iron uptake re 47.1 70 0.0024 22.3 6.5 34 103-136 33-66 (145)
299 2b7e_A PRE-mRNA processing pro 45.4 27 0.00093 19.9 3.2 29 69-97 3-31 (59)
300 2w57_A Ferric uptake regulatio 45.0 78 0.0027 22.2 7.0 35 67-101 32-66 (150)
301 3bu8_A Telomeric repeat-bindin 44.9 99 0.0034 23.4 7.8 22 258-279 122-143 (235)
302 3eyy_A Putative iron uptake re 44.8 77 0.0026 22.1 6.5 59 42-102 9-67 (145)
303 3mwm_A ZUR, putative metal upt 44.7 51 0.0018 22.8 5.4 46 21-66 17-62 (139)
304 2xig_A Ferric uptake regulatio 44.4 80 0.0027 22.2 8.5 43 95-137 34-76 (150)
305 1mzb_A Ferric uptake regulatio 44.0 76 0.0026 21.8 6.8 36 102-137 33-68 (136)
306 3kea_A K1L; tropism, ANK repea 43.9 1.2E+02 0.004 24.0 9.5 112 221-346 132-244 (285)
307 2fe3_A Peroxide operon regulat 43.9 79 0.0027 22.0 7.8 39 99-137 33-71 (145)
308 3bge_A Predicted ATPase; struc 43.7 99 0.0034 23.0 9.2 39 191-229 18-56 (201)
309 4gq2_M Nucleoporin NUP120; bet 43.4 2.4E+02 0.0081 27.4 12.2 50 320-369 897-950 (950)
310 2ion_A PDCD4, programmed cell 43.0 86 0.0029 22.2 9.6 26 217-242 11-36 (152)
311 4ets_A Ferric uptake regulatio 42.1 87 0.003 22.4 6.4 70 33-103 13-85 (162)
312 3ctd_A Putative ATPase, AAA fa 42.1 1.1E+02 0.0037 23.1 9.0 38 192-229 47-84 (213)
313 2o03_A Probable zinc uptake re 41.5 60 0.002 22.1 5.3 44 23-66 16-59 (131)
314 3bge_A Predicted ATPase; struc 41.3 1.1E+02 0.0037 22.8 9.0 60 221-280 10-77 (201)
315 3qil_A Clathrin heavy chain 1; 40.8 47 0.0016 22.3 4.3 48 58-108 38-85 (125)
316 2fe3_A Peroxide operon regulat 40.7 90 0.0031 21.7 6.8 62 41-103 11-72 (145)
317 1mzb_A Ferric uptake regulatio 39.7 89 0.0031 21.4 6.9 60 43-103 9-69 (136)
318 3ygs_P Procaspase 9; apoptosis 39.4 73 0.0025 20.3 6.4 36 67-106 52-87 (97)
319 3hra_A Ankyrin repeat family p 37.6 69 0.0023 23.3 5.7 15 305-319 158-172 (201)
320 3eu9_A Huntingtin-interacting 37.5 52 0.0018 24.8 5.1 50 327-380 181-232 (240)
321 2o03_A Probable zinc uptake re 37.4 55 0.0019 22.3 4.6 45 93-137 16-60 (131)
322 3ltm_A Alpha-REP4; protein eng 37.1 1.2E+02 0.0042 22.3 20.2 172 50-264 31-202 (211)
323 3mwm_A ZUR, putative metal upt 36.5 49 0.0017 22.9 4.2 46 92-137 18-63 (139)
324 3pvs_A Replication-associated 36.2 2.1E+02 0.0072 24.7 15.0 56 297-352 267-327 (447)
325 2nsz_A Programmed cell death p 35.5 1E+02 0.0036 20.9 10.8 23 219-241 11-33 (129)
326 3aji_A 26S proteasome non-ATPa 35.2 1.4E+02 0.0047 22.3 7.7 15 190-204 13-27 (231)
327 3bu8_A Telomeric repeat-bindin 34.9 1.5E+02 0.005 22.5 11.5 22 31-52 33-54 (235)
328 2f6m_A Suppressor protein STP2 34.5 70 0.0024 18.7 4.5 44 90-134 5-48 (65)
329 2ijq_A Hypothetical protein; s 34.4 1.3E+02 0.0043 21.6 8.2 52 192-243 44-103 (161)
330 3ltj_A Alpharep-4; protein eng 34.2 1.3E+02 0.0046 21.8 20.2 76 179-262 120-195 (201)
331 4b4t_O 26S proteasome regulato 33.4 2.2E+02 0.0074 24.0 9.7 98 93-206 82-195 (393)
332 1oai_A Nuclear RNA export fact 32.8 33 0.0011 19.6 2.3 22 100-121 33-55 (59)
333 4g8k_A 2-5A-dependent ribonucl 32.5 2E+02 0.0067 23.2 10.3 21 21-41 26-46 (337)
334 3pvs_A Replication-associated 32.5 2.4E+02 0.0083 24.3 15.7 124 103-229 167-304 (447)
335 2d2s_A Exocyst complex compone 32.2 1.7E+02 0.0059 22.5 13.0 88 58-148 24-117 (235)
336 4b4t_S RPN3, 26S proteasome re 32.2 2.7E+02 0.0091 24.7 13.5 80 87-166 231-315 (523)
337 3jxi_A Vanilloid receptor-rela 32.0 42 0.0014 26.0 3.8 15 192-206 58-72 (260)
338 2ijq_A Hypothetical protein; s 32.0 1.4E+02 0.0048 21.4 8.2 52 64-115 44-103 (161)
339 2r9g_A AAA ATPase, central reg 31.1 1.6E+02 0.0056 21.9 10.5 57 226-283 25-86 (204)
340 3ltm_A Alpha-REP4; protein eng 30.8 1.6E+02 0.0055 21.6 20.1 170 178-367 31-200 (211)
341 2ko4_A Mediator of RNA polymer 30.1 92 0.0031 19.0 3.9 38 8-45 26-64 (81)
342 2p1h_A APAF-1, apoptotic prote 29.8 1.1E+02 0.0036 19.3 5.8 62 36-105 24-85 (94)
343 3t8k_A Uncharacterized protein 29.6 1.6E+02 0.0055 21.3 9.8 29 221-249 41-69 (186)
344 3twr_A Tankyrase-2; ankyrin re 29.5 1.2E+02 0.004 21.1 5.6 16 224-239 14-29 (165)
345 1k1a_A B-cell lymphoma 3-encod 29.5 1.8E+02 0.0061 21.8 9.9 21 97-117 16-36 (241)
346 1ug3_A EIF4GI, eukaryotic prot 29.3 1.3E+02 0.0043 24.8 6.3 24 218-241 14-37 (339)
347 3jxi_A Vanilloid receptor-rela 28.4 70 0.0024 24.6 4.5 56 187-242 9-73 (260)
348 3t5v_B Nuclear mRNA export pro 28.1 1.6E+02 0.0056 25.4 6.8 59 217-275 178-245 (455)
349 2fu4_A Ferric uptake regulatio 28.0 1E+02 0.0035 18.6 6.9 58 43-101 8-66 (83)
350 3ubw_A 14-3-3E, 14-3-3 protein 27.5 2.2E+02 0.0077 22.3 14.0 63 181-243 32-95 (261)
351 1krq_A Ferritin; H-chain like 27.1 1.7E+02 0.0057 20.9 5.9 19 161-179 51-69 (167)
352 2keb_A DNA polymerase subunit 26.6 1.3E+02 0.0045 19.3 6.3 31 71-101 28-58 (101)
353 3bqo_A Telomeric repeat-bindin 25.9 72 0.0024 23.7 3.5 25 92-116 122-146 (211)
354 2crb_A Nuclear receptor bindin 25.4 1.3E+02 0.0046 19.0 4.5 24 323-346 18-41 (97)
355 4b4t_S RPN3, 26S proteasome re 25.3 3.6E+02 0.012 23.9 13.4 65 215-279 231-299 (523)
356 3qil_A Clathrin heavy chain 1; 24.6 53 0.0018 22.1 2.5 53 19-74 34-86 (125)
357 3ctd_A Putative ATPase, AAA fa 24.3 2.3E+02 0.0079 21.4 9.9 57 226-282 46-107 (213)
358 3eu9_A Huntingtin-interacting 23.9 1.3E+02 0.0043 22.5 5.2 102 26-139 15-123 (240)
359 3ljn_A Hypothetical protein; a 23.4 3E+02 0.01 22.4 8.2 80 259-345 179-266 (364)
360 2rg8_A Programmed cell death p 22.9 1.6E+02 0.0054 21.2 5.0 58 253-312 13-72 (165)
361 1wgl_A TOLL-interacting protei 21.2 47 0.0016 18.9 1.6 12 334-345 37-48 (59)
362 3hra_A Ankyrin repeat family p 21.1 2.4E+02 0.008 20.3 7.5 13 28-40 13-25 (201)
363 2qx5_A Nucleoporin NIC96; mRNA 20.8 5E+02 0.017 23.9 16.5 287 22-382 157-483 (661)
364 4fke_A Aminopeptidase N; zinc 20.6 5.8E+02 0.02 24.6 17.0 91 219-314 690-787 (909)
365 2cos_A Serine/threonine protei 20.2 1.3E+02 0.0043 16.8 3.4 11 336-346 38-48 (54)
366 2etb_A Transient receptor pote 20.1 2.2E+02 0.0074 21.7 5.9 22 225-246 9-30 (256)
367 4fjo_A DNA repair protein REV1 20.1 74 0.0025 20.4 2.5 28 52-79 33-60 (97)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-36 Score=278.51 Aligned_cols=374 Identities=9% Similarity=0.027 Sum_probs=331.3
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 040367 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLI 94 (400)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (400)
+++..|+.++..+.+.|++++|+.+|+++... .|+..++..++.+|...|++++|..+++.+... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 57888999999999999999999999999864 578899999999999999999999999998654 67899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCC-----
Q 040367 95 KGLCAESRIMEAAALFTKLRVF---------------GCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGE----- 154 (400)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----- 154 (400)
.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|++.|+++...++.
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 9999999999999999953211 22335889999999999999999999999999776543
Q ss_pred --------------------------------------------CCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHH
Q 040367 155 --------------------------------------------FGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGF 190 (400)
Q Consensus 155 --------------------------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 190 (400)
+...|++++|.++|+++.+. +++..+++.++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 22367889999999998876 57899999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 040367 191 CYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAK 270 (400)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 270 (400)
.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..++..++.+|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999999875 4577889999999999999999999999998763 457889999999999999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcC
Q 040367 271 ELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDG 350 (400)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 350 (400)
.+|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999998875 5578899999999999999999999999999875 3478899999999999999999999999999863
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh----cccch--hHHHHHHhhc
Q 040367 351 VAADTWTYRTFIDGLCKNSYIVEAVELFRTLRIL----KCELD--IRAYNCLIDG 399 (400)
Q Consensus 351 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~ll~~ 399 (400)
+.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+
T Consensus 472 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~ 525 (597)
T 2xpi_A 472 -QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525 (597)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH
Confidence 447899999999999999999999999999876 66787 6788877654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-35 Score=270.24 Aligned_cols=384 Identities=11% Similarity=-0.006 Sum_probs=294.2
Q ss_pred hhHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhc-
Q 040367 3 IFDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS- 81 (400)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 81 (400)
+|+.+.... |+..++..++.++.+.|++++|+.+|+.+... +++..+++.++.+|.+.|++++|.++|+++...
T Consensus 106 ~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 180 (597)
T 2xpi_A 106 VGEKVLDIT---GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFR 180 (597)
T ss_dssp HHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC
T ss_pred HHHHHHhhC---CCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcc
Confidence 455555333 34455666666666666666666666665432 455666666666666666666666666532111
Q ss_pred --------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------------------------
Q 040367 82 --------------CFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGC----------------------------- 118 (400)
Q Consensus 82 --------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------------------- 118 (400)
+.+++..+|+.++.+|.+.|++++|.++|+++.+.+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 260 (597)
T 2xpi_A 181 KDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNY 260 (597)
T ss_dssp ----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCT
T ss_pred ccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCC
Confidence 1122355666666666666666666666666543321
Q ss_pred -----------------------------------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc
Q 040367 119 -----------------------------------------EPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV 157 (400)
Q Consensus 119 -----------------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 157 (400)
+++..+++.++..+.+.|++++|..+|+++...++....
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 340 (597)
T 2xpi_A 261 STYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLD 340 (597)
T ss_dssp HHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCT
T ss_pred cccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHH
Confidence 367788888999999999999999999998876554322
Q ss_pred -----------ccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 040367 158 -----------EGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELC 226 (400)
Q Consensus 158 -----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 226 (400)
.|+.++|.++++++.+.. +.+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 418 (597)
T 2xpi_A 341 VYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFA 418 (597)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 788899999999988654 5678899999999999999999999999998753 456889999999999
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 040367 227 KNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALS 306 (400)
Q Consensus 227 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 306 (400)
+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|..+|+++.+.. +.+..+|..++..|.+.|++++|.+
T Consensus 419 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 496 (597)
T 2xpi_A 419 IEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAIN 496 (597)
T ss_dssp HHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999998864 4477889999999999999999999999998876 5678899999999999999999999
Q ss_pred HHHHHHhC----CCCCc--hhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 040367 307 LYGEMLSK----GIKPD--VVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRT 380 (400)
Q Consensus 307 ~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 380 (400)
+|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|++++|.+.|++
T Consensus 497 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHE 575 (597)
T ss_dssp HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999876 55677 6789999999999999999999999998874 44789999999999999999999999999
Q ss_pred HHHhcccchh-HHHHHHhh
Q 040367 381 LRILKCELDI-RAYNCLID 398 (400)
Q Consensus 381 ~~~~~~~p~~-~~~~~ll~ 398 (400)
+.+. .|+. ..+..|-.
T Consensus 576 ~l~~--~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 576 SLAI--SPNEIMASDLLKR 592 (597)
T ss_dssp HHHH--CTTCHHHHHHHHH
T ss_pred HHhc--CCCChHHHHHHHH
Confidence 9874 4544 44444433
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.6e-30 Score=225.17 Aligned_cols=356 Identities=12% Similarity=0.056 Sum_probs=297.0
Q ss_pred HHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 040367 24 FGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRI 103 (400)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (400)
...+.+.|++++|+..++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 455677888888888888877663 4456667777777888888888888888877764 44677788888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc-----------ccchHHHHHHHHHHH
Q 040367 104 MEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV-----------EGFVDKAKELFLQMK 172 (400)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~a~~~~~~~~ 172 (400)
++|...|+++.+.. +.+..+|..+..++.+.|++++|...|+++....+.... .|++++|.+.|+++.
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88888888887764 445667888888888888888888888888776654332 577888888888887
Q ss_pred hCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHh
Q 040367 173 DENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFV 252 (400)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 252 (400)
... +.+..+|..+..++...|++++|+..|+++.+.+ +.+...+..+...+...|++++|...+++..+.. +.+..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 764 4567899999999999999999999999999874 4567889999999999999999999999998864 336788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHh
Q 040367 253 YNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFE 332 (400)
Q Consensus 253 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 332 (400)
+..+..++...|++++|...|+++.+.+ +.+..+|..+...+.+.|++++|.+.++++.+.. +.+..++..+...+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 8999999999999999999999999876 5578889999999999999999999999999874 4578899999999999
Q ss_pred hCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchh
Q 040367 333 IHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDI 390 (400)
Q Consensus 333 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 390 (400)
.|++++|...++++.+. .+.+..++..+...+.+.|++++|.+.|+++.+ +.|+.
T Consensus 318 ~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~ 372 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTF 372 (388)
T ss_dssp TTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTC
T ss_pred cCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCC
Confidence 99999999999999886 345688999999999999999999999999987 45653
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.4e-33 Score=244.81 Aligned_cols=208 Identities=15% Similarity=0.187 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHhCCCCCCh-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC---------h
Q 040367 162 DKAKELFLQMKDENINPDV-VTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGK---------M 231 (400)
Q Consensus 162 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~ 231 (400)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.+. .
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4455666777766655443 45788899999999999999999999999999999999999999987654 6
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 040367 232 DEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEM 311 (400)
Q Consensus 232 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 311 (400)
+.|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 040367 312 LSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNS 369 (400)
Q Consensus 312 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 369 (400)
.+.|+.||..+|+.|+.+|++.|+.++|.++|++|.+.|..|+..||+.++..|...+
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999888887654
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.3e-32 Score=241.95 Aligned_cols=203 Identities=16% Similarity=0.189 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC---------H
Q 040367 197 NEAKCLLIEMMDQGVQPNV-VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGR---------V 266 (400)
Q Consensus 197 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~ 266 (400)
..+..+.+++.+.+..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. .
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3445556677766655544 46888999999999999999999999999999999999999999987654 6
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHH
Q 040367 267 NRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEM 346 (400)
Q Consensus 267 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 346 (400)
++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchhHHHHHHhhc
Q 040367 347 QRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDIRAYNCLIDG 399 (400)
Q Consensus 347 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 399 (400)
.+.|+.||..+|+.|+.+|++.|+.++|.+++++|++.|..|+..||+.+++.
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~ 219 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEW 219 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998864
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.1e-29 Score=218.06 Aligned_cols=357 Identities=15% Similarity=0.069 Sum_probs=310.9
Q ss_pred chhHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 040367 2 CIFDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS 81 (400)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (400)
+.|+.+....|. +...+..+...+.+.|++++|...++...+.. +.+..+|..+..++...|++++|.+.|+++.+.
T Consensus 20 ~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 96 (388)
T 1w3b_A 20 RHCMQLWRQEPD--NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL 96 (388)
T ss_dssp HHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 356777777766 77888889999999999999999999998764 568899999999999999999999999999987
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCC-----
Q 040367 82 CFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFG----- 156 (400)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----- 156 (400)
. +.+..+|..+..++...|++++|.+.|+++.+.+ +.+...+..+...+...|++++|...|+++....+...
T Consensus 97 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 174 (388)
T 1w3b_A 97 K-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 174 (388)
T ss_dssp C-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred C-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4 3456789999999999999999999999999875 44667788899999999999999999999988766532
Q ss_pred ------cccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 040367 157 ------VEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGK 230 (400)
Q Consensus 157 ------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 230 (400)
..|++++|...|+++.+.+ +.+...+..+...+...|++++|+..+++..... +.+..++..+..++.+.|+
T Consensus 175 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 175 LGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGL 252 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCC
Confidence 3888999999999998875 5567889999999999999999999999998864 4568899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 040367 231 MDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGE 310 (400)
Q Consensus 231 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 310 (400)
+++|...++++.+.. +.+..++..+..++.+.|++++|...++++.+.. +.+..++..+...+...|++++|.+.+++
T Consensus 253 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 253 IDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp HHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999864 3357789999999999999999999999999876 67889999999999999999999999999
Q ss_pred HHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 040367 311 MLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNS 369 (400)
Q Consensus 311 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 369 (400)
+.+.. +.+..++..+..++.+.|++++|...++++.+.. +.+...|..+...+...|
T Consensus 331 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 331 ALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 99864 3467889999999999999999999999999852 335777887777776655
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=3.2e-26 Score=202.22 Aligned_cols=356 Identities=14% Similarity=0.060 Sum_probs=275.7
Q ss_pred hHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 040367 4 FDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCF 83 (400)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 83 (400)
|..++...|. ++..+..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++.+.+
T Consensus 15 ~~~~~~~~p~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 90 (450)
T 2y4t_A 15 TENLYFQSMA--DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK- 90 (450)
T ss_dssp --------CH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred ccccccccHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-
Confidence 4455555554 88899999999999999999999999998764 5578999999999999999999999999999875
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccc
Q 040367 84 TPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNV---FTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGF 160 (400)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 160 (400)
+.+..++..++.+|...|++++|.+.|+++.+.. +.+. ..+..++..+...+....|...+. .|+
T Consensus 91 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-----------~~~ 158 (450)
T 2y4t_A 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFG-----------SGD 158 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HTC
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------cCC
Confidence 4468889999999999999999999999999764 3344 666666555322222222222221 123
Q ss_pred hHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 040367 161 VDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDL 240 (400)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 240 (400)
+++|+..++++.+.. +.+...+..+..++...|++++|+..++++.+.. +.+..++..+..++...|++++|...+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555555555443 4577889999999999999999999999998763 56788999999999999999999999999
Q ss_pred HHHcCCCCCHHhHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCCHHHH
Q 040367 241 MIQIGVRPNAFVYNTL------------MDGFCLTGRVNRAKELFVSMESMGCTHT----VFSYSILINGYCKNKEIEGA 304 (400)
Q Consensus 241 ~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a 304 (400)
+.+.. +.+...+..+ +..+...|++++|...|+++.+.. +.+ ...+..++.++.+.|++++|
T Consensus 237 ~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 237 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 98863 2244444444 788999999999999999998864 223 34788889999999999999
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHH------------HHhcC---
Q 040367 305 LSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDG------------LCKNS--- 369 (400)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g--- 369 (400)
...++++.+.. +.+...|..++.+|...|++++|...++++.+.. +.+...+..+..+ |...|
T Consensus 315 ~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~ 392 (450)
T 2y4t_A 315 IRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSST
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCc
Confidence 99999998864 3367899999999999999999999999999852 3356666666633 44444
Q ss_pred --cHHHHHHHHHHH
Q 040367 370 --YIVEAVELFRTL 381 (400)
Q Consensus 370 --~~~~a~~~~~~~ 381 (400)
+.+++.+.++++
T Consensus 393 ~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 393 NAKKQEIIKAYRKL 406 (450)
T ss_dssp TCCTTHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 567778888874
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-25 Score=202.18 Aligned_cols=360 Identities=14% Similarity=0.032 Sum_probs=301.8
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIK 95 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (400)
+...+......+.+.|++++|+..|+++.... |+..++..+..++...|++++|...++++.+.+ +.+..++..++.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 34567788889999999999999999999874 789999999999999999999999999999875 446778999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC------------------------------------------------------
Q 040367 96 GLCAESRIMEAAALFTKLRVFGCEPN------------------------------------------------------ 121 (400)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~------------------------------------------------------ 121 (400)
++...|++++|...|+++...+ +++
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 9999999999999999987664 211
Q ss_pred -------------------------HHHHHHHHHHHHh---cCChHHHHHHHHHHHc-----C--CCCC-----------
Q 040367 122 -------------------------VFTYNTLINGLYR---TGHTIVALNLFEEMAS-----G--NGEF----------- 155 (400)
Q Consensus 122 -------------------------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~--~~~~----------- 155 (400)
...+......+.. .|++++|+..|+++.. . .+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 3333344444444 8999999999999887 3 2211
Q ss_pred -------CcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 040367 156 -------GVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKN 228 (400)
Q Consensus 156 -------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 228 (400)
...|++++|...++++.+... +...+..+..++...|++++|...++++.+.. +.+...+..+...+...
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHh
Confidence 117889999999999988753 38888999999999999999999999998864 45677889999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 040367 229 GKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLY 308 (400)
Q Consensus 229 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 308 (400)
|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+
T Consensus 318 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999874 3366788889999999999999999999998875 557788999999999999999999999
Q ss_pred HHHHhCCCC-Cc----hhhHHHHHHHHHh---hCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 040367 309 GEMLSKGIK-PD----VVIYNTLFVVLFE---IHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRT 380 (400)
Q Consensus 309 ~~~~~~~~~-~~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 380 (400)
+++.+.... ++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...+.+.|++++|.+.|++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 998875322 11 3378889999999 999999999999999863 44688889999999999999999999999
Q ss_pred HHHhc
Q 040367 381 LRILK 385 (400)
Q Consensus 381 ~~~~~ 385 (400)
+.+..
T Consensus 475 a~~~~ 479 (514)
T 2gw1_A 475 SADLA 479 (514)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 99753
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=8.4e-25 Score=193.11 Aligned_cols=337 Identities=10% Similarity=0.027 Sum_probs=264.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040367 36 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRV 115 (400)
Q Consensus 36 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 115 (400)
+...+....... +.+...+..++..+.+.|++++|+.+|+++.+.. +.+..++..++.++...|++++|...|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344444444443 4567889999999999999999999999999874 45788999999999999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC
Q 040367 116 FGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYAND 195 (400)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (400)
.+ +.+..++..++.++.+.|++++|...|+++....+.... ...+...+.... ....+..+...+...|+
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~------~~~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENE---EKEAQSQLIKSD------EMQRLRSQALNAFGSGD 158 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHH---HHHHHHHHHHHH------HHHHHHHHHHHHHHHTC
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh---hHHHHHHHHHHH------HHHHHHHHHHHHHHcCC
Confidence 86 557889999999999999988888888877664432100 001111111110 01123344566899999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 040367 196 WNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVS 275 (400)
Q Consensus 196 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 275 (400)
+++|+..++++.+.. +.+...+..+..++.+.|++++|...++++.+.. +.+..++..++.+|...|++++|...|++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999864 5678899999999999999999999999998863 44788999999999999999999999999
Q ss_pred HHhcCCCCChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCc----hhhHHHHHHHHHhhCcHHHH
Q 040367 276 MESMGCTHTVFSYSIL------------INGYCKNKEIEGALSLYGEMLSKGIKPD----VVIYNTLFVVLFEIHQVERA 339 (400)
Q Consensus 276 ~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a 339 (400)
+.... +.+...+..+ +..+...|++++|...++++.+.... + ...+..+..++.+.|++++|
T Consensus 237 ~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 237 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHH
Confidence 98875 4455555555 88899999999999999999986322 2 34778889999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchhH
Q 040367 340 FKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDIR 391 (400)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 391 (400)
...++++.+. .+.+...|..+..+|...|++++|.+.++++.+ +.|+..
T Consensus 315 ~~~~~~a~~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~ 363 (450)
T 2y4t_A 315 IRVCSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQ 363 (450)
T ss_dssp HHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCH
T ss_pred HHHHHHHHHh-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchH
Confidence 9999999886 244789999999999999999999999999997 456543
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=4.7e-24 Score=192.66 Aligned_cols=362 Identities=11% Similarity=0.041 Sum_probs=286.5
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIK 95 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (400)
....|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|++.++++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 34567888899999999999999999998875 5578899999999999999999999999998875 446788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC------------------------------------CCCHH----------------
Q 040367 96 GLCAESRIMEAAALFTKLRVFGC------------------------------------EPNVF---------------- 123 (400)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~------------------------------------~~~~~---------------- 123 (400)
++...|++++|...|+.+....- .|+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999998864321110 01100
Q ss_pred --------------HHHHHHHHHH--------hcCChHHHHHHHHHHHcCCCCCCc------------------ccchHH
Q 040367 124 --------------TYNTLINGLY--------RTGHTIVALNLFEEMASGNGEFGV------------------EGFVDK 163 (400)
Q Consensus 124 --------------~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~------------------~~~~~~ 163 (400)
....+...+. ..|++++|..+++++....+.... .|++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 1111111111 124788899999998887665321 678899
Q ss_pred HHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040367 164 AKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQ 243 (400)
Q Consensus 164 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 243 (400)
|...+++..... |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 262 A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 262 AQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999998864 457888889999999999999999999998864 45788899999999999999999999999998
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----C
Q 040367 244 IGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIK-----P 318 (400)
Q Consensus 244 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~ 318 (400)
.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.... .
T Consensus 339 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 339 LN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp HC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 74 3356788889999999999999999999998875 567788999999999999999999999998874211 1
Q ss_pred chhhHHHHHHHHHhh----------CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhc
Q 040367 319 DVVIYNTLFVVLFEI----------HQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILK 385 (400)
Q Consensus 319 ~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 385 (400)
....+......+... |++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|++..+..
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 122234455677777 99999999999999863 4468889999999999999999999999998753
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.6e-23 Score=188.19 Aligned_cols=326 Identities=13% Similarity=0.048 Sum_probs=279.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 040367 52 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLING 131 (400)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (400)
...+......+.+.|++++|+..|+++.+.+ |+...+..+..++...|++++|.+.++++.+.+ +.+..++..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4567788899999999999999999999874 689999999999999999999999999999886 5678899999999
Q ss_pred HHhcCChHHHHHHHHHHHcCCCCC--------------------------------------------------------
Q 040367 132 LYRTGHTIVALNLFEEMASGNGEF-------------------------------------------------------- 155 (400)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~~~~~-------------------------------------------------------- 155 (400)
+.+.|++++|...|+++...++..
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999987665411
Q ss_pred -------------------------------------CcccchHHHHHHHHHHHh-----CCC--------CCChHhHHH
Q 040367 156 -------------------------------------GVEGFVDKAKELFLQMKD-----ENI--------NPDVVTYTS 185 (400)
Q Consensus 156 -------------------------------------~~~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~ 185 (400)
...|++++|...++++.+ ..- +.+...+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 126889999999999887 311 223567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 040367 186 VIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGR 265 (400)
Q Consensus 186 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 265 (400)
+...+...|++++|...++++.+.+ |+...+..+..++...|++++|...++++.+.. +.+..++..+..++...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence 8899999999999999999998865 338888899999999999999999999998864 3467788899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHH
Q 040367 266 VNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDE 345 (400)
Q Consensus 266 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 345 (400)
+++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++
T Consensus 320 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999876 5577889999999999999999999999998864 33677888999999999999999999999
Q ss_pred HHHcCCC-CC----HHHHHHHHHHHHh---cCcHHHHHHHHHHHHHhc
Q 040367 346 MQRDGVA-AD----TWTYRTFIDGLCK---NSYIVEAVELFRTLRILK 385 (400)
Q Consensus 346 ~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~ 385 (400)
+.+.... ++ ...+..+...+.. .|++++|.+.++++.+..
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 8875211 11 3488899999999 999999999999998753
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.94 E-value=1.8e-22 Score=172.51 Aligned_cols=201 Identities=13% Similarity=0.029 Sum_probs=125.0
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIK 95 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (400)
++..+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45677788888888888888888888887764 4467788888888888888888888888888764 336677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC---CCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHcCCCCCCcccc
Q 040367 96 GLCAESRIMEAAALFTKLRVFGCE---PNVFTYNTL------------INGLYRTGHTIVALNLFEEMASGNGEFGVEGF 160 (400)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 160 (400)
++...|++++|...++++.+.. + .+...+..+ ...+...|++++|+..++++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~------------ 146 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI------------ 146 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH------------
Confidence 8888888888888888887663 2 234444433 23334444433333332222
Q ss_pred hHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 040367 161 VDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDL 240 (400)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 240 (400)
.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...+++
T Consensus 147 -----------~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 147 -----------LEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp -----------HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -----------HHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2211 2234445555555555555555555555555432 33444555555555555555555555555
Q ss_pred HHHc
Q 040367 241 MIQI 244 (400)
Q Consensus 241 ~~~~ 244 (400)
+.+.
T Consensus 214 a~~~ 217 (359)
T 3ieg_A 214 CLKL 217 (359)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 5443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.94 E-value=6.5e-22 Score=169.09 Aligned_cols=323 Identities=10% Similarity=0.024 Sum_probs=260.3
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040367 51 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLIN 130 (400)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (400)
+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45678889999999999999999999999875 4468899999999999999999999999999875 557889999999
Q ss_pred HHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040367 131 GLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQG 210 (400)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 210 (400)
.+...|++++|...++++....+.. +....+...+..+.. ...+..+...+...|++++|+..++++.+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSE---QEEKEAESQLVKADE------MQRLRSQALDAFDGADYTAAITFLDKILEVC 150 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCH---HHHHHHHHHHHHHHH------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcc---cChHHHHHHHHHHHH------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999888888888877654310 001111111111110 1223344678999999999999999998864
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 040367 211 VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSI 290 (400)
Q Consensus 211 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 290 (400)
+.+...+..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...++...+.. +.+...+..
T Consensus 151 -~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 227 (359)
T 3ieg_A 151 -VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAH 227 (359)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred -CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHH
Confidence 5678889999999999999999999999999874 4477889999999999999999999999998875 444444432
Q ss_pred ------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCch----hhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCC
Q 040367 291 ------------LINGYCKNKEIEGALSLYGEMLSKGIKPDV----VIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAAD 354 (400)
Q Consensus 291 ------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 354 (400)
+...+...|++++|.+.++++.+.... +. ..+..+..++...|++++|...++++.+. .+.+
T Consensus 228 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~ 305 (359)
T 3ieg_A 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDN 305 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-Cccc
Confidence 366788999999999999999986433 33 23456778899999999999999999986 3447
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchhH
Q 040367 355 TWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDIR 391 (400)
Q Consensus 355 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 391 (400)
..++..+...+...|++++|.+.|+++.+. .|+..
T Consensus 306 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~ 340 (359)
T 3ieg_A 306 VNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQ 340 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCh
Confidence 889999999999999999999999999974 56543
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=1.6e-21 Score=176.14 Aligned_cols=324 Identities=13% Similarity=0.102 Sum_probs=264.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 040367 52 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLING 131 (400)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (400)
...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.++++.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567888999999999999999999999875 4578899999999999999999999999999886 5678999999999
Q ss_pred HHhcCChHHHHHHHHHHHcCCCCCCc------------------------------------------------------
Q 040367 132 LYRTGHTIVALNLFEEMASGNGEFGV------------------------------------------------------ 157 (400)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~~~~~~~------------------------------------------------------ 157 (400)
+...|++++|+..|+.+ ...+....
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999998643 22111100
Q ss_pred ---------------------------------ccchHHHHHHHHHHHhCCCCCC-------hHhHHHHHHHHHhcCCHH
Q 040367 158 ---------------------------------EGFVDKAKELFLQMKDENINPD-------VVTYTSVIRGFCYANDWN 197 (400)
Q Consensus 158 ---------------------------------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~ 197 (400)
.+.+++|...++++.+.. +.+ ..++..+...+...|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 136788888888888764 223 234667777888999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040367 198 EAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 277 (400)
Q Consensus 198 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 277 (400)
+|...++++.+.. |+...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.
T Consensus 261 ~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 261 DAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999864 557888889999999999999999999998874 3467888999999999999999999999998
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcC-----CC
Q 040367 278 SMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDG-----VA 352 (400)
Q Consensus 278 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~ 352 (400)
+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. ..
T Consensus 338 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 338 SLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp HHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence 876 5567889999999999999999999999999874 3367788889999999999999999999987642 11
Q ss_pred CCHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHHh
Q 040367 353 ADTWTYRTFIDGLCKN----------SYIVEAVELFRTLRIL 384 (400)
Q Consensus 353 ~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 384 (400)
.....+..+...+... |++++|...++++.+.
T Consensus 416 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 1223345556677777 9999999999999875
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.9e-21 Score=164.25 Aligned_cols=293 Identities=12% Similarity=0.008 Sum_probs=172.8
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 040367 50 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLI 129 (400)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 129 (400)
.+...+..+...+...|++++|.++++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 344455555556666666666666666665543 2244455555556666666666666666666553 33555666666
Q ss_pred HHHHhcC-ChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 130 NGLYRTG-HTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMD 208 (400)
Q Consensus 130 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 208 (400)
..+...| ++++|...|+++.. .. +.+...|..+..++...|++++|+..++++.+
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~-----------------------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 153 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATT-----------------------LE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ 153 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHT-----------------------TC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHH-----------------------hC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666666 54444444444332 11 22345566666666666666666666666665
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------
Q 040367 209 QGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG-------- 280 (400)
Q Consensus 209 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------- 280 (400)
.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..
T Consensus 154 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 231 (330)
T 3hym_B 154 LM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT 231 (330)
T ss_dssp HT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT
T ss_pred hc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc
Confidence 43 2234455556666666666666666666666643 2345566666666666777777776666665431
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHH
Q 040367 281 CTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRT 360 (400)
Q Consensus 281 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 360 (400)
.+.....+..+...+...|++++|.+.++++.+... .+...+..+..++...|++++|.+.++++.+.. +.+...+..
T Consensus 232 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 309 (330)
T 3hym_B 232 VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTM 309 (330)
T ss_dssp TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHH
Confidence 122345666777777777777777777777766532 255666677777777777777777777766542 235666666
Q ss_pred HHHHH-HhcCcHH
Q 040367 361 FIDGL-CKNSYIV 372 (400)
Q Consensus 361 l~~~~-~~~g~~~ 372 (400)
+..++ ...|+.+
T Consensus 310 l~~~~~~~~g~~~ 322 (330)
T 3hym_B 310 LGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHTTTTC--
T ss_pred HHHHHHHHhCchh
Confidence 66666 3445543
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=2.1e-21 Score=163.91 Aligned_cols=292 Identities=10% Similarity=0.007 Sum_probs=202.8
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 040367 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLI 94 (400)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (400)
.++..+..+...+...|++++|+.+|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 356667777777777788888888887777654 3355566667777777778888888777777654 33566777777
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHh
Q 040367 95 KGLCAES-RIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKD 173 (400)
Q Consensus 95 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (400)
..+...| ++++|.+.+++..+.. +.+...|..+...+...|+ +++|...+++..+
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~-----------------------~~~A~~~~~~a~~ 153 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESE-----------------------HDQAMAAYFTAAQ 153 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTC-----------------------HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccC-----------------------HHHHHHHHHHHHH
Confidence 7777777 7777888877777654 4456677777777777776 6677777777766
Q ss_pred CCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--------
Q 040367 174 ENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIG-------- 245 (400)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------- 245 (400)
.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 154 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 231 (330)
T 3hym_B 154 LM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT 231 (330)
T ss_dssp HT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT
T ss_pred hc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc
Confidence 53 3345566667777777788888888887777653 4456777777777777788888887777776641
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHH
Q 040367 246 VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNT 325 (400)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 325 (400)
.+....++..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..
T Consensus 232 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 309 (330)
T 3hym_B 232 VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTM 309 (330)
T ss_dssp TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHH
Confidence 12334567777777777788888888887777665 4466677777777777788888888777777653 225556666
Q ss_pred HHHHH-HhhCcH
Q 040367 326 LFVVL-FEIHQV 336 (400)
Q Consensus 326 l~~~~-~~~~~~ 336 (400)
+..++ ...|+.
T Consensus 310 l~~~~~~~~g~~ 321 (330)
T 3hym_B 310 LGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHTTTTC-
T ss_pred HHHHHHHHhCch
Confidence 66665 344443
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=3.4e-19 Score=158.69 Aligned_cols=346 Identities=12% Similarity=0.052 Sum_probs=293.7
Q ss_pred CChhhHHHHHHHHhc----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCC
Q 040367 15 PPVCSFNILFGCLAK----NKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK----MGRVSHGFVVLGRILRSCFTPN 86 (400)
Q Consensus 15 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 86 (400)
.++.++..+...+.. .+++++|+..|++..+.| +...+..+...|.. .+++++|.+.|++..+.+ +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 367788888888888 899999999999998875 67888899999998 899999999999998864 6
Q ss_pred hhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHcCCCC----
Q 040367 87 AVTFTSLIKGLCA----ESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYR----TGHTIVALNLFEEMASGNGE---- 154 (400)
Q Consensus 87 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~---- 154 (400)
...+..|...|.. .+++++|...|++..+.| +...+..+...|.. .++.++|+.+|++....+..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 6777888888888 889999999999998865 67788888888887 78999999999998776432
Q ss_pred ---------CCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 040367 155 ---------FGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCY----ANDWNEAKCLLIEMMDQGVQPNVVTFNVI 221 (400)
Q Consensus 155 ---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 221 (400)
....++.++|.+.|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+..+
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l 261 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRL 261 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 122678999999999998875 56678888888876 889999999999998865 55667777
Q ss_pred HHHHHh----CCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 040367 222 MDELCK----NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT-----GRVNRAKELFVSMESMGCTHTVFSYSILI 292 (400)
Q Consensus 222 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 292 (400)
...|.. .+++++|...|++..+.+ +...+..+...|... +++++|...|++..+.+ +...+..+.
T Consensus 262 g~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 335 (490)
T 2xm6_A 262 GYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLG 335 (490)
T ss_dssp HHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHH
Confidence 777877 899999999999998764 556777788888877 89999999999998865 456778888
Q ss_pred HHHHhcC---CHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHh----hCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040367 293 NGYCKNK---EIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFE----IHQVERAFKLFDEMQRDGVAADTWTYRTFIDGL 365 (400)
Q Consensus 293 ~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (400)
..|...| ++++|.+++++..+.+ +...+..+...+.. .+++++|..+|++..+.+ +...+..+...|
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y 409 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIY 409 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 8888766 8899999999999874 67788888998888 899999999999999864 577888899999
Q ss_pred Hh----cCcHHHHHHHHHHHHHhccc
Q 040367 366 CK----NSYIVEAVELFRTLRILKCE 387 (400)
Q Consensus 366 ~~----~g~~~~a~~~~~~~~~~~~~ 387 (400)
.+ .+++++|...|++..+.+..
T Consensus 410 ~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 410 YYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 88 89999999999999987743
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=2.3e-19 Score=161.37 Aligned_cols=371 Identities=13% Similarity=0.083 Sum_probs=243.6
Q ss_pred hhHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 040367 3 IFDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC 82 (400)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 82 (400)
+|+..++..|. +..+|..++.. .+.|++++|..+|+++.+.. |.+...|..++..+.+.|++++|..+|++++..
T Consensus 1 ~le~al~~~P~--~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~- 75 (530)
T 2ooe_A 1 MAEKKLEENPY--DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK- 75 (530)
T ss_dssp CHHHHHHHCTT--CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT-
T ss_pred ChhhHhhhCCC--CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Confidence 57788888877 99999999984 78899999999999999874 567889999999999999999999999999987
Q ss_pred CCCChhhHHHHHHHH-HhcCCHHHHHH----HHHHHHHc-CCC-CCHHHHHHHHHHHHh---------cCChHHHHHHHH
Q 040367 83 FTPNAVTFTSLIKGL-CAESRIMEAAA----LFTKLRVF-GCE-PNVFTYNTLINGLYR---------TGHTIVALNLFE 146 (400)
Q Consensus 83 ~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~ 146 (400)
.|+...|...+... ...|+.+.|.+ +|++.... |.. ++...|...+....+ .|+++.|..+|+
T Consensus 76 -~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~ 154 (530)
T 2ooe_A 76 -VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQ 154 (530)
T ss_dssp -CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHH
Confidence 36777777777533 34566666554 67666543 433 356777777776654 678889999999
Q ss_pred HHHcCCCCCC--------------------------cccchHHHHHHHHHH------HhCC---CCCC--------hHhH
Q 040367 147 EMASGNGEFG--------------------------VEGFVDKAKELFLQM------KDEN---INPD--------VVTY 183 (400)
Q Consensus 147 ~~~~~~~~~~--------------------------~~~~~~~a~~~~~~~------~~~~---~~~~--------~~~~ 183 (400)
+.... +... ..+.+..|..++... .+.. ++|+ ...|
T Consensus 155 ~al~~-P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w 233 (530)
T 2ooe_A 155 RGCVN-PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMW 233 (530)
T ss_dssp HHTTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHH
T ss_pred HHHhc-hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHH
Confidence 98873 2211 112334444444431 1111 2333 1344
Q ss_pred HHHHHHHHhc----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------CCChH-------HHHHHHHHH
Q 040367 184 TSVIRGFCYA----NDW----NEAKCLLIEMMDQGVQPNVVTFNVIMDELCK-------NGKMD-------EASRLLDLM 241 (400)
Q Consensus 184 ~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~ 241 (400)
...+...... ++. +.+..+|++++... +.+...|..+...+.+ .|+++ +|..++++.
T Consensus 234 ~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~A 312 (530)
T 2ooe_A 234 KKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA 312 (530)
T ss_dssp HHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHH
Confidence 4444332221 122 35666777776642 4456667666666654 57765 777777777
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch
Q 040367 242 IQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTV-FSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDV 320 (400)
Q Consensus 242 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 320 (400)
.+.-.+.+...+..++..+.+.|++++|..+|+++.+.. +.+. ..|..++..+.+.|++++|.++|+++.+... .+.
T Consensus 313 l~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~ 390 (530)
T 2ooe_A 313 ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRH 390 (530)
T ss_dssp TTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCT
T ss_pred HHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-Cch
Confidence 652123356667777777777777777777777777653 2222 4677777777777777777777777776521 122
Q ss_pred hhHHHHHHH-HHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q 040367 321 VIYNTLFVV-LFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRIL 384 (400)
Q Consensus 321 ~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 384 (400)
..|...+.. +...|++++|..+|+++++. .+.+...|..++..+.+.|+.++|..+|++....
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~-~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 222222211 23467777777777777765 2335677777777777777777777777777764
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=1.5e-21 Score=167.54 Aligned_cols=315 Identities=10% Similarity=0.014 Sum_probs=226.6
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHH-HHHHHHhcCCC---CChhhHHHHHHHHHhcCCHH
Q 040367 29 KNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV-VLGRILRSCFT---PNAVTFTSLIKGLCAESRIM 104 (400)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 104 (400)
..+.++.+...++.+...+ |+ ++...|++++|.+ .+++....... .+...+..+...+...|+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRD--AE---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLP 81 (368)
T ss_dssp --------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHH
T ss_pred CcccHHHHHHHHHHHHcCC--ch---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHH
Confidence 3445556666666665542 22 2334578888888 87766554211 13566888889999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHH
Q 040367 105 EAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYT 184 (400)
Q Consensus 105 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 184 (400)
+|...|+++.+.. +.+..++..+..++...|++++|+..|+++.. .. +.+..++.
T Consensus 82 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------------------~~-~~~~~~~~ 136 (368)
T 1fch_A 82 NAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLE-----------------------LK-PDNQTALM 136 (368)
T ss_dssp HHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------HC-TTCHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHh-----------------------cC-CCCHHHHH
Confidence 9999999999875 56788999999999999997777766665533 22 44677889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHHhCCChHHHHHHHHHHHHcCCCC-
Q 040367 185 SVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNV---------------IMDELCKNGKMDEASRLLDLMIQIGVRP- 248 (400)
Q Consensus 185 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 248 (400)
.+..++...|++++|...++++.+.. +.+...+.. .+..+...|++++|...++++.+.....
T Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 215 (368)
T 1fch_A 137 ALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI 215 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcc
Confidence 99999999999999999999998864 222222221 2334448899999999999999864322
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 040367 249 NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFV 328 (400)
Q Consensus 249 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 328 (400)
+..++..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 293 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGI 293 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 57888999999999999999999999998875 5578899999999999999999999999998864 346788899999
Q ss_pred HHHhhCcHHHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 040367 329 VLFEIHQVERAFKLFDEMQRDGVAA----------DTWTYRTFIDGLCKNSYIVEAVELFRTLR 382 (400)
Q Consensus 329 ~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 382 (400)
++...|++++|...++++.+..... ...+|..+..+|...|++++|..++++.+
T Consensus 294 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 294 SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 9999999999999999988752111 26889999999999999999999887544
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=1.9e-20 Score=160.66 Aligned_cols=309 Identities=10% Similarity=-0.032 Sum_probs=227.9
Q ss_pred HHhccCChhHHHH-HHHHHHhCCCC-C--CHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 040367 26 CLAKNKHYDTVLS-LFKRLNSTGLF-P--DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAES 101 (400)
Q Consensus 26 ~~~~~~~~~~a~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (400)
++...|++++|++ .|++....... | +...+..+...+...|++++|...++++.+.. +.+..++..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3445588899998 88876654211 1 34567788889999999999999999998875 447778888999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChH
Q 040367 102 RIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVV 181 (400)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 181 (400)
++++|...++++.+.. +.+..++..+...+...|++++|...++++....+.....-... ...... ..+ ..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~-~~ 183 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPA------EEGAGG-AGL-GP 183 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH------HHHhhh-hcc-cH
Confidence 9999999999998875 55788899999999999999999999999988765543311100 000000 011 11
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 040367 182 TYTSVIRGFCYANDWNEAKCLLIEMMDQGVQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGF 260 (400)
Q Consensus 182 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (400)
.+..+...+ ..|++++|+..++++.+..... +..++..+...+...|++++|...++++.+.. +.+..++..+..++
T Consensus 184 ~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 261 (368)
T 1fch_A 184 SKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATL 261 (368)
T ss_dssp --CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 222233333 8899999999999998764221 57888999999999999999999999998863 34678888999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----------chhhHHHHHHHH
Q 040367 261 CLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKP----------DVVIYNTLFVVL 330 (400)
Q Consensus 261 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~ 330 (400)
...|++++|...++++.+.. +.+...+..+..+|...|++++|...++++.+..... ...+|..+..++
T Consensus 262 ~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (368)
T 1fch_A 262 ANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLAL 340 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHH
Confidence 99999999999999998875 5678889999999999999999999999888753221 157889999999
Q ss_pred HhhCcHHHHHHHHHHHH
Q 040367 331 FEIHQVERAFKLFDEMQ 347 (400)
Q Consensus 331 ~~~~~~~~a~~~~~~~~ 347 (400)
...|++++|..++++..
T Consensus 341 ~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 341 SMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHTCGGGHHHHHTTCH
T ss_pred HHhCChHhHHHhHHHHH
Confidence 99999999998887544
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=4.9e-18 Score=151.21 Aligned_cols=351 Identities=14% Similarity=0.044 Sum_probs=282.5
Q ss_pred hhHHHHhcCCCCCChhhHHHHHHHHhc----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhhHHHH
Q 040367 3 IFDYMLNMRPSPPPVCSFNILFGCLAK----NKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK----MGRVSHGFVV 74 (400)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 74 (400)
.|+...+. .++.++..+...+.. .+++++|+..|++..+.| +...+..+...|.. .+++++|...
T Consensus 65 ~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 137 (490)
T 2xm6_A 65 WFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKW 137 (490)
T ss_dssp HHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 45555544 256788889999988 899999999999999875 67788889888988 8899999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHH
Q 040367 75 LGRILRSCFTPNAVTFTSLIKGLCA----ESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYR----TGHTIVALNLFE 146 (400)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 146 (400)
|++..+.+ +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|..+|+
T Consensus 138 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 211 (490)
T 2xm6_A 138 FRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYR 211 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 99998865 67778888888887 789999999999998864 78888899999988 899999999999
Q ss_pred HHHcCCCCC-------------CcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHHHhC
Q 040367 147 EMASGNGEF-------------GVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCY----ANDWNEAKCLLIEMMDQ 209 (400)
Q Consensus 147 ~~~~~~~~~-------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 209 (400)
+....+... ...++.++|...|++..+.+ +...+..+...+.. .+++++|+..|++..+.
T Consensus 212 ~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 212 KSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence 987765321 12678999999999998865 55677778888877 89999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCC
Q 040367 210 GVQPNVVTFNVIMDELCKN-----GKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG---RVNRAKELFVSMESMGC 281 (400)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~ 281 (400)
| +...+..+...|... +++++|...+++..+.+ +...+..+...|...| ++++|...|++..+.+
T Consensus 289 ~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~- 361 (490)
T 2xm6_A 289 G---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG- 361 (490)
T ss_dssp T---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT-
T ss_pred C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC-
Confidence 5 566777788888877 89999999999999875 4567777888887766 8899999999998864
Q ss_pred CCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHh----hCcHHHHHHHHHHHHHcCCC-
Q 040367 282 THTVFSYSILINGYCK----NKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFE----IHQVERAFKLFDEMQRDGVA- 352 (400)
Q Consensus 282 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~- 352 (400)
++..+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|..+|++..+.+..
T Consensus 362 --~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 436 (490)
T 2xm6_A 362 --EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNL 436 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCH
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCC
Confidence 67788899999998 899999999999999875 56778888888887 89999999999999987532
Q ss_pred C-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 353 A-DTWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 353 ~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
| +......+...+. .+.+.+.+..++..+
T Consensus 437 ~~~~~a~~~l~~~~~--~~~~~a~~~a~~~~~ 466 (490)
T 2xm6_A 437 FGTENRNITEKKLTA--KQLQQAELLSQQYIE 466 (490)
T ss_dssp HHHHHHHHHHTTSCH--HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhcCH--hHHHHHHHHHHHHHH
Confidence 2 3333333333322 344555544444443
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=5.4e-21 Score=163.90 Aligned_cols=266 Identities=9% Similarity=-0.042 Sum_probs=214.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHH
Q 040367 86 NAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAK 165 (400)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~ 165 (400)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|+..|+++..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------------- 127 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLE--------------- 127 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---------------
Confidence 45568888999999999999999999999875 56888999999999999997777776666543
Q ss_pred HHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHhCCChHHH
Q 040367 166 ELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPN-----------VVTFNVIMDELCKNGKMDEA 234 (400)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a 234 (400)
.. +.+..++..+..++...|++++|+..++++.+.. |+ ...+..+...+...|++++|
T Consensus 128 --------~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 196 (365)
T 4eqf_A 128 --------LQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGV 196 (365)
T ss_dssp --------HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHH
T ss_pred --------cC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHH
Confidence 21 4467889999999999999999999999998753 22 22334457788999999999
Q ss_pred HHHHHHHHHcCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 235 SRLLDLMIQIGVR-PNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLS 313 (400)
Q Consensus 235 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 313 (400)
...++++.+.... ++..++..+..++...|++++|...++++.+.. +.+..+|..+..+|...|++++|.+.++++.+
T Consensus 197 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 275 (365)
T 4eqf_A 197 KELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275 (365)
T ss_dssp HHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999987432 167889999999999999999999999999876 56788999999999999999999999999998
Q ss_pred CCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 040367 314 KGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVA-----------ADTWTYRTFIDGLCKNSYIVEAVELFRT 380 (400)
Q Consensus 314 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 380 (400)
.. +.+..++..+..++...|++++|...|+++.+.... .+...|..+..++...|+.+.+.++.++
T Consensus 276 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 276 IQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred cC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 74 335788999999999999999999999998874211 1357889999999999999988877665
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=3e-20 Score=159.21 Aligned_cols=275 Identities=12% Similarity=-0.031 Sum_probs=136.1
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 040367 18 CSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGL 97 (400)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (400)
..|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|+..++++.+.. +.+..++..+..+|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555555555555555555555555443 3345555555555555555555555555555543 22344555555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCC
Q 040367 98 CAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENIN 177 (400)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 177 (400)
...|++++|...++++.+.. +.+...+..+ .
T Consensus 144 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~------------------------------------------------~ 174 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQN-PKYKYLVKNK------------------------------------------------K 174 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-HHHHCC-----------------------------------------------------
T ss_pred HccccHHHHHHHHHHHHHhC-ccchHHHhhh------------------------------------------------c
Confidence 55555555555555555432 1111111111 0
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHH
Q 040367 178 PDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQ-PNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTL 256 (400)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 256 (400)
.....+..+...+...|++++|+..++++.+.... ++..++..+...+...|++++|...++++.+.. +.+..++..+
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 253 (365)
T 4eqf_A 175 GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRL 253 (365)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 01223344445555555555555555555554211 135555555555555566666666665555542 2245555556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----------CchhhHHH
Q 040367 257 MDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIK-----------PDVVIYNT 325 (400)
Q Consensus 257 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~ 325 (400)
..+|...|++++|...|+++.+.. +.+...+..+..+|...|++++|...++++.+.... .+...|..
T Consensus 254 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 332 (365)
T 4eqf_A 254 GATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAA 332 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHH
Confidence 666666666666666666655543 334555556666666666666666666655543110 02455666
Q ss_pred HHHHHHhhCcHHHHHHHHHH
Q 040367 326 LFVVLFEIHQVERAFKLFDE 345 (400)
Q Consensus 326 l~~~~~~~~~~~~a~~~~~~ 345 (400)
+..++...|+.+.+..+.++
T Consensus 333 l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 333 LRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHcCcHHHHHHHHHh
Confidence 66666666666666665543
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=1e-17 Score=150.70 Aligned_cols=374 Identities=12% Similarity=0.052 Sum_probs=276.0
Q ss_pred chhHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCChhhHHH----HHH
Q 040367 2 CIFDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF-CKMGRVSHGFV----VLG 76 (400)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~ 76 (400)
.+|+.+++..|. +...|...+..+.+.|++++|..+|+++.... |+...|...+... ...|+.+.|.+ +|+
T Consensus 33 ~~~e~al~~~P~--~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~ 108 (530)
T 2ooe_A 33 KTYERLVAQFPS--SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYD 108 (530)
T ss_dssp HHHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHH
Confidence 478888888877 88899999999999999999999999999874 6888887777533 45688887765 777
Q ss_pred HHHhc-CCC-CChhhHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-------------
Q 040367 77 RILRS-CFT-PNAVTFTSLIKGLCA---------ESRIMEAAALFTKLRVFGCEPNVFTYNTLINGL------------- 132 (400)
Q Consensus 77 ~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~------------- 132 (400)
+.+.. |.. ++...|...+..... .|+++.|..+|++.......+....|.......
T Consensus 109 ~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~ 188 (530)
T 2ooe_A 109 FALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIE 188 (530)
T ss_dssp HHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHH
Confidence 76653 433 356778877776654 789999999999998731111123444332211
Q ss_pred HhcCChHHHHHHHHHH------HcCCC---CCCc------------------------ccc----hHHHHHHHHHHHhCC
Q 040367 133 YRTGHTIVALNLFEEM------ASGNG---EFGV------------------------EGF----VDKAKELFLQMKDEN 175 (400)
Q Consensus 133 ~~~~~~~~a~~~~~~~------~~~~~---~~~~------------------------~~~----~~~a~~~~~~~~~~~ 175 (400)
.+.+++..|..+++.. ..... .+.. .++ ..++...|++.....
T Consensus 189 ~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~ 268 (530)
T 2ooe_A 189 DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL 268 (530)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC
Confidence 1234566666666552 22110 0000 011 135667788777653
Q ss_pred CCCChHhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 040367 176 INPDVVTYTSVIRGFCY-------ANDWN-------EAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLM 241 (400)
Q Consensus 176 ~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 241 (400)
|.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++
T Consensus 269 -p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a 347 (530)
T 2ooe_A 269 -GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 347 (530)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5567888888888775 69987 89999999987323456888999999999999999999999999
Q ss_pred HHcCCCCC-H-HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCC
Q 040367 242 IQIGVRPN-A-FVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILING-YCKNKEIEGALSLYGEMLSKGIKP 318 (400)
Q Consensus 242 ~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~ 318 (400)
++. .|+ . ..|..++..+.+.|++++|..+|++..+.. +.+...|...+.. +...|++++|..+|++.++.. +.
T Consensus 348 l~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~ 423 (530)
T 2ooe_A 348 LAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GD 423 (530)
T ss_dssp HHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TT
T ss_pred hCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CC
Confidence 985 343 2 578888888899999999999999998763 3333334333322 346899999999999998864 33
Q ss_pred chhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCC-CC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q 040367 319 DVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGV-AA--DTWTYRTFIDGLCKNSYIVEAVELFRTLRIL 384 (400)
Q Consensus 319 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 384 (400)
+...|..++..+.+.|+.++|..+|+++...+. .| ....|...+......|+.+.+..+++++.+.
T Consensus 424 ~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 424 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 678899999999999999999999999998632 33 2558888888888899999999999999864
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.1e-18 Score=155.01 Aligned_cols=363 Identities=12% Similarity=-0.049 Sum_probs=181.7
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC----
Q 040367 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNST--------GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC---- 82 (400)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 82 (400)
.....||.+...+...|++++|++.|++..+. .-+....+|..+..+|...|++++|...++++.+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 45667999999999999999999999987542 113346789999999999999999999998876531
Q ss_pred --CC-CChhhHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HhcCChHHHHHHHHHHHcCCCC
Q 040367 83 --FT-PNAVTFTSLIKGLCA--ESRIMEAAALFTKLRVFGCEPNVFTYNTLINGL---YRTGHTIVALNLFEEMASGNGE 154 (400)
Q Consensus 83 --~~-~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~ 154 (400)
.. ....++.....++.. .+++++|++.|++..+.. |-++..+..+..++ ...++.++|++.+++....++.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 11 124456555555554 457999999999998874 44566666665554 3456666677766665544332
Q ss_pred CC---------------cccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 040367 155 FG---------------VEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFN 219 (400)
Q Consensus 155 ~~---------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 219 (400)
.. ..+..++|.+.+++..... +.+...+..+...+...|++++|+..+++..+.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 11 1233444455554444332 2334444445555555555555555555544432 22333444
Q ss_pred HHHHHHHhC-------------------CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040367 220 VIMDELCKN-------------------GKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG 280 (400)
Q Consensus 220 ~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 280 (400)
.+..+|... +.++.|...+++..+.. +.+...+..+..+|...|++++|...|++..+..
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 443333221 11233444444443332 1123334444444445555555555554444432
Q ss_pred CCCChh--hHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHH
Q 040367 281 CTHTVF--SYSILIN-GYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWT 357 (400)
Q Consensus 281 ~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 357 (400)
..+... .+..+.. .....|++++|+..+++.++.. |+.... .+....+..+++...+. -+.+..+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~---------~~~~~~l~~~~~~~l~~-~p~~~~~ 432 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREK---------EKMKDKLQKIAKMRLSK-NGADSEA 432 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHH---------HHHHHHHHHHHHHHHHH-CC-CTTH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHH---------HHHHHHHHHHHHHHHHh-CCCCHHH
Confidence 111110 1111111 1123444445555544444432 121111 11112223333333333 2346778
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhcc-cchhHHH
Q 040367 358 YRTFIDGLCKNSYIVEAVELFRTLRILKC-ELDIRAY 393 (400)
Q Consensus 358 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~ 393 (400)
|..+...|...|++++|++.|++.++.+- .|+..+|
T Consensus 433 ~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 99999999999999999999999987542 4555444
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.87 E-value=1.3e-19 Score=152.70 Aligned_cols=268 Identities=12% Similarity=-0.008 Sum_probs=199.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHH
Q 040367 87 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKE 166 (400)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~ 166 (400)
...+..+...+...|++++|..+++++.+.. +.+..++..+...+...|++++|...++++..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---------------- 83 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARM---------------- 83 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------
Confidence 3445566667777777777777777777654 44666777777777777776555555554432
Q ss_pred HHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHhCCCh
Q 040367 167 LFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVI--------------MD-ELCKNGKM 231 (400)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~ 231 (400)
.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+ .. .+...|++
T Consensus 84 -------~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 84 -------LD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp -------HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHH
T ss_pred -------cC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccH
Confidence 11 3356677777777788888888888888877653 2222222222 22 36777889
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 040367 232 DEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEM 311 (400)
Q Consensus 232 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 311 (400)
++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998864 3367888889999999999999999999998875 556788899999999999999999999998
Q ss_pred HhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 040367 312 LSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAA-----------DTWTYRTFIDGLCKNSYIVEAVELFRT 380 (400)
Q Consensus 312 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 380 (400)
.+.. +.+...+..+..++...|++++|.+.++++.+..... +...+..+..++.+.|++++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 8864 3367788889999999999999999999988753221 477888999999999999999999876
Q ss_pred HHH
Q 040367 381 LRI 383 (400)
Q Consensus 381 ~~~ 383 (400)
..+
T Consensus 312 ~l~ 314 (327)
T 3cv0_A 312 NVE 314 (327)
T ss_dssp CSH
T ss_pred HHH
Confidence 653
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=3.3e-19 Score=150.22 Aligned_cols=281 Identities=9% Similarity=-0.005 Sum_probs=191.7
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIK 95 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (400)
+...+..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34455666666677777777777777766553 3355666666666666666666666666666553 234555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCC
Q 040367 96 GLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDEN 175 (400)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 175 (400)
.+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------------------------------------------- 132 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA-------------------------------------------- 132 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC---------------------------------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH--------------------------------------------
Confidence 6666666666666666665542 1122111111100
Q ss_pred CCCChHhHHHH-HH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhH
Q 040367 176 INPDVVTYTSV-IR-GFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVY 253 (400)
Q Consensus 176 ~~~~~~~~~~l-~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 253 (400)
.|+......+ .. .+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++
T Consensus 133 -~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 209 (327)
T 3cv0_A 133 -DVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLW 209 (327)
T ss_dssp --------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred -HHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHH
Confidence 0111111122 22 3677888899999999888764 4467888888888999999999999999888764 3467788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------chhh
Q 040367 254 NTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKP-----------DVVI 322 (400)
Q Consensus 254 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~ 322 (400)
..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+..... +...
T Consensus 210 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 288 (327)
T 3cv0_A 210 NKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSM 288 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHH
Confidence 888899999999999999999988775 5567888889999999999999999999888753321 4678
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHH
Q 040367 323 YNTLFVVLFEIHQVERAFKLFDEMQ 347 (400)
Q Consensus 323 ~~~l~~~~~~~~~~~~a~~~~~~~~ 347 (400)
|..+..++...|++++|..++++..
T Consensus 289 ~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 289 WDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8888999999999999999887543
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.86 E-value=7.6e-19 Score=144.65 Aligned_cols=160 Identities=13% Similarity=0.073 Sum_probs=84.6
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhH---HHH
Q 040367 180 VVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVY---NTL 256 (400)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l 256 (400)
...+..+..++...|++++|++.+++ +.+...+..+...+.+.|++++|.+.++++.+.. |+.... ...
T Consensus 101 ~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~ 172 (291)
T 3mkr_A 101 TTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAW 172 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHH
Confidence 33444444555555666666555554 2345555555555666666666666666655542 222111 112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcH
Q 040367 257 MDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQV 336 (400)
Q Consensus 257 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 336 (400)
+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|.+.++++++... .+..++..++..+...|+.
T Consensus 173 ~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~~~~~l~~l~~~~~~~g~~ 250 (291)
T 3mkr_A 173 VSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-GHPETLINLVVLSQHLGKP 250 (291)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCC
Confidence 222333456666666666665553 44555566666666666666666666666555432 2455555555555556655
Q ss_pred HH-HHHHHHHHHHc
Q 040367 337 ER-AFKLFDEMQRD 349 (400)
Q Consensus 337 ~~-a~~~~~~~~~~ 349 (400)
++ +.++++++.+.
T Consensus 251 ~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 251 PEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 43 34555555553
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=4.3e-18 Score=140.14 Aligned_cols=275 Identities=10% Similarity=0.025 Sum_probs=214.9
Q ss_pred HHHHhccCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 040367 24 FGCLAKNKHYDTVLSLFKRLNSTGLFPD--LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAES 101 (400)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (400)
++.....|+++.|+..++..... .|+ ......+.++|...|+++.|+..++. .-+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 45567789999999999887654 333 34566778999999999999986654 23567788889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCCh
Q 040367 102 RIMEAAALFTKLRVFGCEP-NVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDV 180 (400)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 180 (400)
+.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+.
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----------------------------~~~~ 130 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----------------------------GDSL 130 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----------------------------CCSH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----------------------------CCCH
Confidence 9999999999998876434 677788888999999996666655433 3577
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 040367 181 VTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTF---NVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLM 257 (400)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 257 (400)
..+..++.++.+.|++++|.+.++++.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+.
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la 207 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQA 207 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHH
Confidence 789999999999999999999999999864 443211 22334445568999999999999997 456888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcH
Q 040367 258 DGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEG-ALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQV 336 (400)
Q Consensus 258 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 336 (400)
.++.+.|++++|...|+++.+.. +.++.++..++..+...|+.++ +.++++++.+.. |+... +.....+.+.+
T Consensus 208 ~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~f 281 (291)
T 3mkr_A 208 ACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDF 281 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHH
Confidence 99999999999999999999886 6688899999999999999876 678999998864 33321 23334455555
Q ss_pred HHHHHH
Q 040367 337 ERAFKL 342 (400)
Q Consensus 337 ~~a~~~ 342 (400)
+++..-
T Consensus 282 d~~~~~ 287 (291)
T 3mkr_A 282 DRLVLQ 287 (291)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=8.8e-19 Score=147.45 Aligned_cols=267 Identities=11% Similarity=0.062 Sum_probs=110.1
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIK 95 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (400)
++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..++...+. .+++.+.+.++.
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~ 102 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 102 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHH
Confidence 3458888888888888888888888642 46668888888888888888888877766654 445677778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCC
Q 040367 96 GLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDEN 175 (400)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 175 (400)
+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|..+|..+
T Consensus 103 ~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------------------- 148 (449)
T 1b89_A 103 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------------------------- 148 (449)
T ss_dssp ------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------------------------
T ss_pred HHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------------------------
Confidence 8888888888877774 366678888888888888876666666543
Q ss_pred CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 040367 176 INPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNT 255 (400)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 255 (400)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +...+.-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHH
Confidence 25777777777777777777777776 2567777777777777777777444433 2223333446
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC------chhhHHHHHH
Q 040367 256 LMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSK-GIKP------DVVIYNTLFV 328 (400)
Q Consensus 256 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~ 328 (400)
++..|.+.|++++|..+++...... +.....|+.|..+|++- ++++..+.++..... +++| +...|.-+..
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777655 45566677776666654 334433333322221 2222 3456777777
Q ss_pred HHHhhCcHHHHHHH
Q 040367 329 VLFEIHQVERAFKL 342 (400)
Q Consensus 329 ~~~~~~~~~~a~~~ 342 (400)
.|...++++.|...
T Consensus 291 ly~~~~e~d~A~~t 304 (449)
T 1b89_A 291 LYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHhhchHHHHHHH
Confidence 77777777776653
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=1.9e-19 Score=151.47 Aligned_cols=283 Identities=12% Similarity=0.094 Sum_probs=132.4
Q ss_pred hccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 040367 28 AKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAA 107 (400)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 107 (400)
.+.|++++|.++++++. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 46788999999999983 3358999999999999999999999653 57779999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHH
Q 040367 108 ALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVI 187 (400)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 187 (400)
..++..++. .+++.+.+.++.+|.+.|++.++.++++ .|+..+|..+.
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------------------------------~pn~~a~~~IG 129 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------------------------------GPNNAHIQQVG 129 (449)
T ss_dssp -----------------------------CHHHHTTTTT------------------------------CC---------
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------------------------------CCcHHHHHHHH
Confidence 988877764 5567888999999999999665544431 35667999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 040367 188 RGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVN 267 (400)
Q Consensus 188 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 267 (400)
..|...|.+++|...|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++
T Consensus 130 d~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~ 194 (449)
T 1b89_A 130 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 194 (449)
T ss_dssp -------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHH
Confidence 9999999999999999976 37899999999999999999999988 27889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHh--hCcHHHHHHHHHH
Q 040367 268 RAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFE--IHQVERAFKLFDE 345 (400)
Q Consensus 268 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~ 345 (400)
.|......+. ..+.....++..|.+.|.+++|..+++...... +-....|+-+..++++ .++..+.++.|..
T Consensus 195 lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~ 268 (449)
T 1b89_A 195 LAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS 268 (449)
T ss_dssp HHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9966655432 344446678999999999999999999998765 4467788888777765 3444455554432
Q ss_pred HHHcCCCC------CHHHHHHHHHHHHhcCcHHHHHHH
Q 040367 346 MQRDGVAA------DTWTYRTFIDGLCKNSYIVEAVEL 377 (400)
Q Consensus 346 ~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~ 377 (400)
- ..++| +...|..+.-.|.+.++++.|...
T Consensus 269 ~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 269 R--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp T--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred H--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 1 12222 456688899999999999988763
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.80 E-value=2.3e-17 Score=129.90 Aligned_cols=200 Identities=11% Similarity=0.015 Sum_probs=165.8
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHH
Q 040367 177 NPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTL 256 (400)
Q Consensus 177 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 256 (400)
|++...+..+...+.+.|++++|+..|++.++.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 5677889999999999999999999999999874 5678899999999999999999999999999874 3467788899
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHH
Q 040367 257 MDGFCLT-----------GRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNT 325 (400)
Q Consensus 257 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 325 (400)
..++... |++++|...+++..+.. +.+...+..+..++...|++++|+..++++++.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 99999999999999886 5578889999999999999999999999999987 58888999
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 040367 326 LFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLR 382 (400)
Q Consensus 326 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 382 (400)
+..++...|++++|+..++++.+.. +.+...+..+...+...|++++|++.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999863 4468889999999999999999999988764
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.80 E-value=9.1e-17 Score=130.40 Aligned_cols=227 Identities=12% Similarity=0.084 Sum_probs=190.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHH
Q 040367 121 NVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAK 200 (400)
Q Consensus 121 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 200 (400)
....+..+...+...|++++|+..|+++ .+.. .+...+..+..++...|++++|+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a-----------------------~~~~--~~~~~~~~~~~~~~~~~~~~~A~ 58 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKA-----------------------WELH--KDITYLNNRAAAEYEKGEYETAI 58 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------------HHHS--CCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHH-----------------------HHhh--ccHHHHHHHHHHHHHcccHHHHH
Confidence 3467788888999999966666665554 3333 46778999999999999999999
Q ss_pred HHHHHHHhCCC--CCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 040367 201 CLLIEMMDQGV--QPN----VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFV 274 (400)
Q Consensus 201 ~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 274 (400)
..++++.+... .++ ..++..+..++...|++++|...++++.+.. |+. ..+...|++++|...++
T Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~ 129 (258)
T 3uq3_A 59 STLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAE 129 (258)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHH
Confidence 99999886431 112 5788899999999999999999999999863 442 45667789999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCC
Q 040367 275 SMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAAD 354 (400)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 354 (400)
.+.... +.+...+..+...+...|++++|.+.++++.+... .+...+..+..++...|++++|...++++.+.. +.+
T Consensus 130 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~ 206 (258)
T 3uq3_A 130 AEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNF 206 (258)
T ss_dssp HHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHH
Confidence 998875 55677889999999999999999999999998753 367889999999999999999999999999873 446
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q 040367 355 TWTYRTFIDGLCKNSYIVEAVELFRTLRIL 384 (400)
Q Consensus 355 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 384 (400)
...+..+...+.+.|++++|.+.+++..+.
T Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 888999999999999999999999999864
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=4.8e-19 Score=161.06 Aligned_cols=120 Identities=13% Similarity=0.177 Sum_probs=99.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHH
Q 040367 249 NAFVYNTLMDGFCLTGRVNRAKELFVSMES---MGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNT 325 (400)
Q Consensus 249 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 325 (400)
-..+|+++|++|++.|+.++|..+|..|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456788888888888888888888877653 46788888888888888888888888888888888888888888888
Q ss_pred HHHHHHhhCc-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 040367 326 LFVVLFEIHQ-VERAFKLFDEMQRDGVAADTWTYRTFIDGLCKN 368 (400)
Q Consensus 326 l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 368 (400)
++.++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 8888888887 477888888888888888888888887655544
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=4.2e-15 Score=131.83 Aligned_cols=306 Identities=11% Similarity=-0.031 Sum_probs=172.3
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhc--------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 040367 50 PDLYTYNILINCFCKMGRVSHGFVVLGRILRS--------CFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVF----- 116 (400)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 116 (400)
.....|+.+...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567999999999999999999999987652 11224567889999999999999999999987653
Q ss_pred C-C-CCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHH---
Q 040367 117 G-C-EPNVFTYNTLINGLYRTG--HTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRG--- 189 (400)
Q Consensus 117 ~-~-~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--- 189 (400)
+ . .....++..+..++...| ++++|+..|++.....+. +...+..+..+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~------------------------~~~~~~~~~~~~~~ 184 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK------------------------NPEFTSGLAIASYR 184 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT------------------------CHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC------------------------CHHHHHHHHHHHHH
Confidence 1 0 123566666666666544 556666666655443322 33333333333
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 040367 190 FCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK----NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGR 265 (400)
Q Consensus 190 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 265 (400)
+...++.++|++.+++..+.+ +.+...+..+...+.. .|++++|.+.+++..... +.+..++..+...|...|+
T Consensus 185 l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 262 (472)
T 4g1t_A 185 LDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDE 262 (472)
T ss_dssp HHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred hcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCc
Confidence 223455556666666655542 2344444444333332 345556666666665543 2345555566666666666
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCchhhHHHH
Q 040367 266 VNRAKELFVSMESMGCTHTVFSYSILINGYCKN-------------------KEIEGALSLYGEMLSKGIKPDVVIYNTL 326 (400)
Q Consensus 266 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l 326 (400)
+++|...++++.+.. +.+..++..+..+|... +.++.|...+++..+... .+..++..+
T Consensus 263 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l 340 (472)
T 4g1t_A 263 PDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSIL 340 (472)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHH
T ss_pred hHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhH
Confidence 666666666666553 33444555554444321 224455555555555432 234455566
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHcCCCCCH--HHHHHHHH-HHHhcCcHHHHHHHHHHHHH
Q 040367 327 FVVLFEIHQVERAFKLFDEMQRDGVAADT--WTYRTFID-GLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 327 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~a~~~~~~~~~ 383 (400)
...+...|++++|.+.|+++++....+.. ..+..+.. .....|++++|+..|++.++
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666666666666666654222111 11222222 22345666666666666554
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.78 E-value=8.8e-17 Score=126.60 Aligned_cols=199 Identities=14% Similarity=0.011 Sum_probs=104.4
Q ss_pred CCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 040367 14 PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSL 93 (400)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (400)
|+++..+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..+++.++.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3566677777777777777777777777777664 4466777777777777777777777777777664 3355666666
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchH
Q 040367 94 IKGLCAE-----------SRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVD 162 (400)
Q Consensus 94 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 162 (400)
..++... |++++|+..+++..+.. +.+...+..+..++...|++++|+..|++.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-------------- 144 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQA-------------- 144 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHH--------------
Confidence 6666666 55555555555555443 224444555555555555533333333322
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 040367 163 KAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLM 241 (400)
Q Consensus 163 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 241 (400)
.+.. .+...+..+..++...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++.
T Consensus 145 ---------l~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 145 ---------LALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp ---------HHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred ---------Hhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 1211 234444445555555555555555555554432 233444444444555555555555544443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=3.5e-16 Score=126.90 Aligned_cols=224 Identities=10% Similarity=0.033 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHHH
Q 040367 53 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGC--EPN----VFTYN 126 (400)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 126 (400)
..+..+...+...|++++|...++++.+.. .+...+..+..++...|++++|...+++..+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555555556666666666666655554 4555555555666666666666666655554320 011 34455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 040367 127 TLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEM 206 (400)
Q Consensus 127 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 206 (400)
.+...+...|++++|+ ..++++
T Consensus 84 ~l~~~~~~~~~~~~A~----------------------------------------------------------~~~~~a 105 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTI----------------------------------------------------------EYYQKS 105 (258)
T ss_dssp HHHHHHHHTTCHHHHH----------------------------------------------------------HHHHHH
T ss_pred HHHHHHHHcccHHHHH----------------------------------------------------------HHHHHH
Confidence 5555555555544444 444444
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh
Q 040367 207 MDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVF 286 (400)
Q Consensus 207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 286 (400)
.+.. |+. ..+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+.. +.+..
T Consensus 106 ~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 174 (258)
T 3uq3_A 106 LTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDAR 174 (258)
T ss_dssp HHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHH
Confidence 3321 221 12233344444444444444431 1123344444444445555555555555544443 33344
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHH
Q 040367 287 SYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQR 348 (400)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 348 (400)
.+..+...+...|++++|.+.++++.+.. +.+...+..+..++...|++++|...++++.+
T Consensus 175 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 175 GYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45555555555555555555555554432 12344444555555555555555555555444
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=157.56 Aligned_cols=152 Identities=13% Similarity=0.123 Sum_probs=121.9
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHH---cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH
Q 040367 213 PNVVTFNVIMDELCKNGKMDEASRLLDLMIQ---IGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYS 289 (400)
Q Consensus 213 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 289 (400)
.-..||+++|++|++.|++++|.++|.+|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3456899999999999999999999988764 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCC------HHHHHHHH
Q 040367 290 ILINGYCKNKE-IEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAAD------TWTYRTFI 362 (400)
Q Consensus 290 ~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~ 362 (400)
++|.++++.|+ .++|.++|++|.+.|+.||..+|+.++....+ +.+++..+++ ..++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 99999999987 47899999999999999999999988865544 3444444444 2234443 33334455
Q ss_pred HHHHhcC
Q 040367 363 DGLCKNS 369 (400)
Q Consensus 363 ~~~~~~g 369 (400)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 5555544
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.76 E-value=6.5e-16 Score=126.46 Aligned_cols=235 Identities=11% Similarity=0.145 Sum_probs=121.7
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC--hhhHHHHHH
Q 040367 18 CSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPN--AVTFTSLIK 95 (400)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 95 (400)
..+......+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|++.++++.+....++ ...|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345555666666777777777777666653 23444666666666666777777777666665321111 122556666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCC
Q 040367 96 GLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDEN 175 (400)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 175 (400)
.+...|++++|.+.|++..+.. +.+..++..+...+...|++++|+..+++... ..
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-----------------------~~ 138 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR-----------------------PT 138 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC-----------------------SS
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh-----------------------cC
Confidence 6666666666666666666553 33445566666666666664444444433322 11
Q ss_pred CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHcC-CCCC--
Q 040367 176 INPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGK---MDEASRLLDLMIQIG-VRPN-- 249 (400)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~-- 249 (400)
+.+...+..+...+...+++++|++.++++.+.. +.+...+..+..++...|+ +++|...++++.+.. ..|+
T Consensus 139 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 216 (272)
T 3u4t_A 139 -TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY 216 (272)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc
Confidence 2234444444423333346666666666555542 2234444445555555454 555555555554431 0111
Q ss_pred ----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040367 250 ----AFVYNTLMDGFCLTGRVNRAKELFVSMESM 279 (400)
Q Consensus 250 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 279 (400)
..++..+...|...|++++|...++++.+.
T Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 217 KDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 123444444555555555555555555444
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.76 E-value=1.4e-15 Score=122.90 Aligned_cols=213 Identities=11% Similarity=-0.025 Sum_probs=182.5
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 040367 180 VVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDG 259 (400)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (400)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5678888899999999999999999998864 5578889999999999999999999999998874 3467888899999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHH
Q 040367 260 FCLTGRVNRAKELFVSMESMGC-THTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVER 338 (400)
Q Consensus 260 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 338 (400)
+...|++++|...++++.+.+. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999987222 33567788899999999999999999999998743 367788899999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchhHHHHHHhh
Q 040367 339 AFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDIRAYNCLID 398 (400)
Q Consensus 339 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 398 (400)
|...++++.+. .+.+...+..+...+...|++++|.+.++++.+. .|+...+..++.
T Consensus 194 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~ 250 (252)
T 2ho1_A 194 ARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQEFQA 250 (252)
T ss_dssp HHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHHHHT
T ss_pred HHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHHHHh
Confidence 99999999876 3457888889999999999999999999999874 566665555543
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.76 E-value=9.3e-15 Score=119.62 Aligned_cols=224 Identities=13% Similarity=0.018 Sum_probs=163.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh----cCCH
Q 040367 121 NVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCY----ANDW 196 (400)
Q Consensus 121 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 196 (400)
+..++..+...+...|++++|+..|++. .+ +.+...+..+...+.. .+++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a-----------------------~~---~~~~~a~~~lg~~~~~g~~~~~~~ 58 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKA-----------------------CD---LKENSGCFNLGVLYYQGQGVEKNL 58 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------------HH---TTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHH-----------------------HH---CCCHHHHHHHHHHHHcCCCcCCCH
Confidence 5556666777777777755555554443 22 1244566667777777 7888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHH
Q 040367 197 NEAKCLLIEMMDQGVQPNVVTFNVIMDELCK----NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL----TGRVNR 268 (400)
Q Consensus 197 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 268 (400)
++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++
T Consensus 59 ~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~ 132 (273)
T 1ouv_A 59 KKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKK 132 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHH
Confidence 88888888877764 56677777777777 788888888888877764 56677777777777 788888
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHh----hCcHHHHH
Q 040367 269 AKELFVSMESMGCTHTVFSYSILINGYCK----NKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFE----IHQVERAF 340 (400)
Q Consensus 269 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 340 (400)
|...|++..+.+ +...+..+...|.. .+++++|.+.+++..+.+ +...+..+...+.. .+++++|.
T Consensus 133 A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~ 206 (273)
T 1ouv_A 133 AVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEAL 206 (273)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHH
T ss_pred HHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 888888887754 45666777777777 788888888888887764 45666777777777 88888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHhc
Q 040367 341 KLFDEMQRDGVAADTWTYRTFIDGLCK----NSYIVEAVELFRTLRILK 385 (400)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 385 (400)
..+++..+.+ +...+..+...|.. .+++++|.+.|++..+.|
T Consensus 207 ~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 207 ARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8888887763 36667777778877 888888888888888765
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.75 E-value=2e-15 Score=119.69 Aligned_cols=217 Identities=12% Similarity=-0.058 Sum_probs=183.3
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHH
Q 040367 177 NPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTL 256 (400)
Q Consensus 177 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 256 (400)
+.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 3456778889999999999999999999998864 4568889999999999999999999999999874 3467788899
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhC
Q 040367 257 MDGFCLT-GRVNRAKELFVSMESMGCTH-TVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIH 334 (400)
Q Consensus 257 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 334 (400)
...+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcC
Confidence 9999999 99999999999998832223 367788899999999999999999999998643 35778889999999999
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchhHHHHHHhh
Q 040367 335 QVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDIRAYNCLID 398 (400)
Q Consensus 335 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 398 (400)
++++|...++++.+.....+...+..+...+...|+.++|..+++.+.+. .|+......++.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~ 223 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTVLT 223 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHhc
Confidence 99999999999988632157778888888889999999999999999863 577666655553
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.75 E-value=8.6e-16 Score=130.65 Aligned_cols=117 Identities=4% Similarity=-0.018 Sum_probs=54.0
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 040367 19 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR-VSHGFVVLGRILRSCFTPNAVTFTSLIKGL 97 (400)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (400)
+|+.+...+.+.|++++|+..|+++.+.. +.+..+|..+..++...|+ +++|+..++++++.. +.+...|..+..++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 44444444444555555555555544432 2234444444444444443 555555555544443 12344444444444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 040367 98 CAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHT 138 (400)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (400)
...|++++|+..|+++++.. +-+..+|..+..++.+.|++
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~ 216 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLW 216 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCCh
Confidence 44444445544444444443 23444444444444444443
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.75 E-value=2e-15 Score=123.53 Aligned_cols=242 Identities=12% Similarity=0.015 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHH
Q 040367 122 VFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKC 201 (400)
Q Consensus 122 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 201 (400)
...+......+...|++++|+..|+++.. .. +.+...+..+..++...|++++|+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-----------------------~~-p~~~~~~~~l~~~~~~~~~~~~A~~ 58 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEA-----------------------KK-YNSPYIYNRRAVCYYELAKYDLAQK 58 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHH-----------------------TT-CCCSTTHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----------------------hC-CCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 34556677888888886666666655543 32 3355688889999999999999999
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040367 202 LLIEMMDQGVQP--NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM 279 (400)
Q Consensus 202 ~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 279 (400)
.++++.+.+..+ ....|..+..++...|++++|...++++.+.. +.+..++..+..+|...|++++|...+++..+.
T Consensus 59 ~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 59 DIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 999999843222 23458889999999999999999999999874 336688999999999999999999999999887
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCc---HHHHHHHHHHHHHcC-CCCC-
Q 040367 280 GCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQ---VERAFKLFDEMQRDG-VAAD- 354 (400)
Q Consensus 280 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~- 354 (400)
. +.+...+..+...+...+++++|.+.++++.+... .+...+..+..++...|+ +++|...++++.+.. ..|+
T Consensus 138 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 215 (272)
T 3u4t_A 138 T-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215 (272)
T ss_dssp S-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGG
T ss_pred C-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccccc
Confidence 4 55777888888344445699999999999998743 356777788888888888 888999999887642 1233
Q ss_pred -----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchhHH
Q 040367 355 -----TWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDIRA 392 (400)
Q Consensus 355 -----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 392 (400)
...|..+...|...|++++|.+.++++.+. .|+...
T Consensus 216 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 256 (272)
T 3u4t_A 216 YKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNKK 256 (272)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHHH
Confidence 257888999999999999999999999984 565543
No 45
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.75 E-value=1.9e-15 Score=132.60 Aligned_cols=337 Identities=12% Similarity=0.031 Sum_probs=224.5
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---hhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 040367 22 ILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV---SHGFVVLGRILRSCFTPNAVTFTSLIKGLC 98 (400)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (400)
.+...+.+.|++++|+++|++..+.| +..++..+...|...|+. ++|.++|++..+. +...+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35677888999999999999998776 344556666777777887 8999999988854 5566677777555
Q ss_pred hcC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHcCCCCCC-------------c
Q 040367 99 AES-----RIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHT---IVALNLFEEMASGNGEFG-------------V 157 (400)
Q Consensus 99 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~-------------~ 157 (400)
..+ ++++|...|++..+.| .+ ..+..|...|...+.. .++.+.+......+.... .
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g-~~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANG-EG--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTT-CS--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCC-CH--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCc
Confidence 554 7889999999998876 23 3677777777766543 334444544443332111 1
Q ss_pred ccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC----CC
Q 040367 158 EGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYAN---DWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKN----GK 230 (400)
Q Consensus 158 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~ 230 (400)
....+.+..+++..... +...+..+...|...| +.++|++.|++..+.| +++...+..+...|... ++
T Consensus 158 ~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 158 DQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp GGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred ccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCC
Confidence 22344455555554433 3337888888999999 9999999999999887 55666656677777554 78
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHH-H--HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-----CHH
Q 040367 231 MDEASRLLDLMIQIGVRPNAFVYNTLMDG-F--CLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNK-----EIE 302 (400)
Q Consensus 231 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~ 302 (400)
+++|...|++.. .| ++..+..+... + ...+++++|...|++..+.+ +...+..|...|. .| +++
T Consensus 233 ~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 999999999987 33 55666677776 4 56899999999999998865 6777788888887 45 999
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHh----hCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCcHHHH
Q 040367 303 GALSLYGEMLSKGIKPDVVIYNTLFVVLFE----IHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCK----NSYIVEA 374 (400)
Q Consensus 303 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 374 (400)
+|.++|++.. .| +......+...|.. ..++++|..+|++..+.|. ......|...|.. ..+.++|
T Consensus 305 ~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 305 AAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHH
Confidence 9999999888 43 66777777777765 3489999999999988763 3345566666654 4589999
Q ss_pred HHHHHHHHHhcccc
Q 040367 375 VELFRTLRILKCEL 388 (400)
Q Consensus 375 ~~~~~~~~~~~~~p 388 (400)
..+|+...+.|...
T Consensus 378 ~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 378 YVFSQLAKAQDTPE 391 (452)
T ss_dssp HHHHHHHHTTCCHH
T ss_pred HHHHHHHHHCCCHH
Confidence 99999998877433
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.74 E-value=4.3e-15 Score=126.38 Aligned_cols=248 Identities=11% Similarity=0.059 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040367 52 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESR-IMEAAALFTKLRVFGCEPNVFTYNTLIN 130 (400)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (400)
..+|..+..++...|++++|++.++++++.. +.+...|+.+..++...|+ +++|+..|+++.... +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567888888888999999999999998875 3467788888888999996 999999999988875 557888888888
Q ss_pred HHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040367 131 GLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQG 210 (400)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 210 (400)
++...|++++|+..|++++.. . +-+...|..+..++...|++++|+..++++++.+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~l-----------------------d-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~ 230 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQ-----------------------D-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED 230 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHH-----------------------C-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred HHHHccCHHHHHHHHHHHHHh-----------------------C-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 888888866666665555432 2 4467788888888888899999999998888864
Q ss_pred CCCCHHHHHHHHHHHHh-CCChHHH-----HHHHHHHHHcCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCC
Q 040367 211 VQPNVVTFNVIMDELCK-NGKMDEA-----SRLLDLMIQIGVRPNAFVYNTLMDGFCLTG--RVNRAKELFVSMESMGCT 282 (400)
Q Consensus 211 ~~~~~~~~~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~ 282 (400)
+.+...|+.+..++.. .|..++| +..++++++.. +-+...+..+..++...| ++++|.+.+..+ +.. +
T Consensus 231 -P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p 306 (382)
T 2h6f_A 231 -VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-H 306 (382)
T ss_dssp -TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-C
T ss_pred -CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-C
Confidence 4567788888888888 5555776 47777777753 235667777777777777 577888877777 333 4
Q ss_pred CChhhHHHHHHHHHhcC---------CHHHHHHHHHHH-HhCCCCCchhhHHHHHHHH
Q 040367 283 HTVFSYSILINGYCKNK---------EIEGALSLYGEM-LSKGIKPDVVIYNTLFVVL 330 (400)
Q Consensus 283 ~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 330 (400)
.+...+..++..|.+.| ..++|.++++++ .+.. +.....|..+...+
T Consensus 307 ~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 307 SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 55667777777777753 247788888877 5542 11334444444443
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.74 E-value=1.8e-14 Score=117.98 Aligned_cols=223 Identities=12% Similarity=-0.070 Sum_probs=128.3
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCChhhHH
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK----MGRVSHGFVVLGRILRSCFTPNAVTFT 91 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 91 (400)
++.++..+...+...|++++|+..|++..+. .+..++..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5556666666777777777777777776663 245566666666666 677777777777766653 555666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHcCCCCCCcccchHH
Q 040367 92 SLIKGLCA----ESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYR----TGHTIVALNLFEEMASGNGEFGVEGFVDK 163 (400)
Q Consensus 92 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 163 (400)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a--------------- 140 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA--------------- 140 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH---------------
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHH---------------
Confidence 66666666 666677776666666543 55556666666655 55544433333332
Q ss_pred HHHHHHHHHhCCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHH
Q 040367 164 AKELFLQMKDENINPDVVTYTSVIRGFCY----ANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK----NGKMDEAS 235 (400)
Q Consensus 164 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 235 (400)
.+.+ +...+..+...+.. .+++++|+..+++..+.+ +...+..+...|.. .+++++|.
T Consensus 141 --------~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~ 206 (273)
T 1ouv_A 141 --------CDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEAL 206 (273)
T ss_dssp --------HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHH
T ss_pred --------HhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 2222 33444555555555 556666666666655543 33445555555555 55556666
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhc
Q 040367 236 RLLDLMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAKELFVSMESM 279 (400)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 279 (400)
..+++..+.+ +...+..+..+|.. .+++++|...|++..+.
T Consensus 207 ~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 207 ARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 5555555542 13444445555555 55555555555555544
No 48
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=5.4e-14 Score=132.56 Aligned_cols=318 Identities=13% Similarity=0.119 Sum_probs=206.8
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHH
Q 040367 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGL--FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS 92 (400)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (400)
.++.--...+.+|...|.+.+|++++++..-.+- ..+...-+.++.+..+. +..+..+..++.... + ...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHH
Confidence 3455556778889999999999999999984421 12344555566555555 445555555544321 1 223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC------CCCCcccchHHHHH
Q 040367 93 LIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGN------GEFGVEGFVDKAKE 166 (400)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~a~~ 166 (400)
+...+...|.+++|..+|++.. ......+.++. ..+++++|.++.+++.... ......|++++|++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5566667777777777777642 11122222222 5566666666665542211 11122555666666
Q ss_pred HHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 040367 167 LFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGV 246 (400)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 246 (400)
.|.+. .|...|..++.++.+.|++++|++.+....+.. +++...+.++.+|++.+++++...+. +
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~--- 1191 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N--- 1191 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---
Confidence 66443 256677778888888888888888888777653 33333345777788887777544332 2
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHH
Q 040367 247 RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTL 326 (400)
Q Consensus 247 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 326 (400)
.++...+..+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+++.. +..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHH
Confidence 335556667888888888888888888775 357888888888888888888887662 56777777
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 327 FVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 327 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++..+.
T Consensus 1257 ~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7778788887777776553 233566777888888888888888888877763
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.73 E-value=9.8e-16 Score=123.11 Aligned_cols=202 Identities=11% Similarity=0.088 Sum_probs=160.6
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 040367 178 PDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLM 257 (400)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 257 (400)
.....|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 355678888889999999999999999999864 5578889999999999999999999999998874 34678888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHH
Q 040367 258 DGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVE 337 (400)
Q Consensus 258 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 337 (400)
..+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998876 5678889999999999999999999999998864 336778888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q 040367 338 RAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRIL 384 (400)
Q Consensus 338 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 384 (400)
+|...++++.+.. +.+..++..+...+...|++++|.+.++++.+.
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999999998863 446888999999999999999999999999874
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.73 E-value=3.7e-16 Score=128.09 Aligned_cols=247 Identities=10% Similarity=-0.045 Sum_probs=164.6
Q ss_pred hcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCC
Q 040367 99 AESRIMEAAALFTKLRVFGC---EPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDEN 175 (400)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 175 (400)
..|++++|+..++++.+... +.+..++..+...+...|++++|...|+++.. ..
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-----------------------~~ 73 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA-----------------------IR 73 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------HC
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH-----------------------cC
Confidence 44677777777777776521 12456677777777777776666555555432 21
Q ss_pred CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 040367 176 INPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNT 255 (400)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 255 (400)
+.+..++..+..++...|++++|+..++++.+.. +.+...+..+..++...|++++|...++++.+.. |+......
T Consensus 74 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~ 149 (275)
T 1xnf_A 74 -PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSL 149 (275)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred -CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHH
Confidence 3456777778888888888888888888887753 3456777788888888888888888888887753 33333344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---chhhHHHHHHHHHh
Q 040367 256 LMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKP---DVVIYNTLFVVLFE 332 (400)
Q Consensus 256 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 332 (400)
.+..+...|++++|...+.+..... +++...+ .++..+...++.++|.+.++++.+..... +...+..+...+..
T Consensus 150 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 227 (275)
T 1xnf_A 150 WLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS 227 (275)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHH
Confidence 4445566788888888887776654 3444444 36666777777888888888776642211 14667778888888
Q ss_pred hCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 040367 333 IHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELF 378 (400)
Q Consensus 333 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 378 (400)
.|++++|...|+++.+.. |+. +.....++...|++++|++.+
T Consensus 228 ~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 228 LGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 888888888888888752 322 223355667778888877765
No 51
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.73 E-value=4.9e-16 Score=134.97 Aligned_cols=302 Identities=12% Similarity=0.058 Sum_probs=198.3
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CC
Q 040367 51 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPN----AVTFTSLIKGLCAESRIMEAAALFTKLRVF----GCE-PN 121 (400)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~ 121 (400)
....+......+...|++++|...++++.+.... + ...+..+...+...|++++|...+++.... +-. ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444555555566666666666666666554211 2 234555666666666666666666654432 111 12
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC------
Q 040367 122 VFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYAND------ 195 (400)
Q Consensus 122 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 195 (400)
..++..+...+...|++++|...+++. +++....... .....++..+...+...|+
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~a----------------l~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~~~~ 148 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRH----------------LDISRELNDK--VGEARALYNLGNVYHAKGKSFGCPG 148 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH----------------HHHHHHHTCH--HHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH----------------HHHHHhcccc--cchHHHHHHHHHHHHHcCCcccccc
Confidence 445667777777778877777765544 2222222110 1124467778888888888
Q ss_pred --------------HHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HH
Q 040367 196 --------------WNEAKCLLIEMMDQ----GV-QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGV-RPN----AF 251 (400)
Q Consensus 196 --------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~ 251 (400)
+++|...+++..+. +. +....++..+...+...|++++|...+++..+... .++ ..
T Consensus 149 ~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 228 (406)
T 3sf4_A 149 PQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 228 (406)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 89999988886542 11 11234677888889999999999999998876411 111 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-Cchh
Q 040367 252 VYNTLMDGFCLTGRVNRAKELFVSMESMGCT-HT----VFSYSILINGYCKNKEIEGALSLYGEMLSK----GIK-PDVV 321 (400)
Q Consensus 252 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~ 321 (400)
++..+..+|...|++++|...+++..+.... ++ ..++..+...|...|++++|.+.++++.+. +.. ....
T Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 308 (406)
T 3sf4_A 229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 308 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 6778888999999999999999988653211 11 456788889999999999999999988763 111 1145
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCcH
Q 040367 322 IYNTLFVVLFEIHQVERAFKLFDEMQRD----GV-AADTWTYRTFIDGLCKNSYI 371 (400)
Q Consensus 322 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 371 (400)
++..+...+...|++++|...+++..+. +. .....++..+...+...|+.
T Consensus 309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 309 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 6778889999999999999999987753 21 11245666777777777765
No 52
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.72 E-value=2e-13 Score=123.87 Aligned_cols=145 Identities=14% Similarity=0.114 Sum_probs=107.9
Q ss_pred hhHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hhhHHHHHHHHH
Q 040367 3 IFDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR---VSHGFVVLGRIL 79 (400)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~ 79 (400)
.|++.+..+|. |..+|..++..+.+.++++.+..+|+++... ++.....|...+..-.+.++ .+.+.++|++.+
T Consensus 54 ~lE~~l~~np~--d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 54 KLNDMIEEQPT--DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHHCcC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 46777778877 9999999999999999999999999999887 46678889999988888888 999999999998
Q ss_pred hcC-CCCChhhHHHHHHHHHhcCCH--------HHHHHHHHHHHHc-CC-CC-CHHHHHHHHHHHHh---------cCCh
Q 040367 80 RSC-FTPNAVTFTSLIKGLCAESRI--------MEAAALFTKLRVF-GC-EP-NVFTYNTLINGLYR---------TGHT 138 (400)
Q Consensus 80 ~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~~-~~-~~-~~~~~~~l~~~~~~---------~~~~ 138 (400)
... ..|++..|...+....+.++. +.+.++|+..... |. .+ +...|...+..... .++.
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 864 137888888887766655543 3344677765543 55 44 45677777765432 3345
Q ss_pred HHHHHHHHHHHc
Q 040367 139 IVALNLFEEMAS 150 (400)
Q Consensus 139 ~~a~~~~~~~~~ 150 (400)
+.+..+|++++.
T Consensus 211 ~~~R~iy~raL~ 222 (679)
T 4e6h_A 211 QYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 667777777764
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.72 E-value=2e-15 Score=123.69 Aligned_cols=245 Identities=11% Similarity=-0.011 Sum_probs=145.6
Q ss_pred CChhhHHHHHHHHHhcCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 040367 66 GRVSHGFVVLGRILRSCF---TPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVAL 142 (400)
Q Consensus 66 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 142 (400)
|++++|+..++++.+... +.+..++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 455556666665555421 1123455555666666666666666666666553 335566666666666666655555
Q ss_pred HHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 040367 143 NLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIM 222 (400)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 222 (400)
..|+++... . +.+...+..+..++...|++++|...++++.+.. |+.......+
T Consensus 98 ~~~~~al~~-----------------------~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~ 151 (275)
T 1xnf_A 98 EAFDSVLEL-----------------------D-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWL 151 (275)
T ss_dssp HHHHHHHHH-----------------------C-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHhc-----------------------C-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHH
Confidence 554443321 1 2345667777777777777777777777777643 3333333344
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CChhhHHHHHHHHHhcC
Q 040367 223 DELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCT---HTVFSYSILINGYCKNK 299 (400)
Q Consensus 223 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~ 299 (400)
..+...|++++|...+.+..... +++...+ .++..+...++.++|...+......... .+...+..+...|...|
T Consensus 152 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 229 (275)
T 1xnf_A 152 YLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLG 229 (275)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcC
Confidence 44456677888888887766653 2233333 3666666777777787777776543211 11466777888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHH
Q 040367 300 EIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLF 343 (400)
Q Consensus 300 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 343 (400)
++++|...++++.+.. |+. +.....++...|++++|++.+
T Consensus 230 ~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 230 DLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 8888888888888753 322 233355666777877777665
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.71 E-value=7e-16 Score=134.29 Aligned_cols=277 Identities=14% Similarity=0.080 Sum_probs=198.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHH
Q 040367 89 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNV----FTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKA 164 (400)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a 164 (400)
.+..+...+...|++++|...|+++.+.+ +.+. .++..+...+...|++++|...+++.
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------- 112 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD---------------- 112 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----------------
Confidence 34455667777888888888888887764 2233 46777888888888888887776554
Q ss_pred HHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhCCC---------
Q 040367 165 KELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQ----G-VQPNVVTFNVIMDELCKNGK--------- 230 (400)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~--------- 230 (400)
+++.+.... .+....++..+...+...|++++|...+++..+. + .+....++..+...+...|+
T Consensus 113 l~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 190 (411)
T 4a1s_A 113 LTLAKSMND--RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGK 190 (411)
T ss_dssp HHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHccC--chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchh
Confidence 222222211 1224567788888999999999999999887653 1 12234567788888888999
Q ss_pred --------hHHHHHHHHHHHHc----CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHH
Q 040367 231 --------MDEASRLLDLMIQI----GV-RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCT-HT----VFSYSILI 292 (400)
Q Consensus 231 --------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~ 292 (400)
+++|...+++..+. +. .....++..+...|...|++++|...+++..+.... ++ ...+..+.
T Consensus 191 ~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 270 (411)
T 4a1s_A 191 FGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLG 270 (411)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 89998888877653 11 112346777888899999999999999988654211 11 23678888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC--C---CchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc----CC-CCCHHHHHHHH
Q 040367 293 NGYCKNKEIEGALSLYGEMLSKGI--K---PDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD----GV-AADTWTYRTFI 362 (400)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~ 362 (400)
..|...|++++|.+.++++.+... . ....++..+...+...|++++|...++++.+. +. .....++..+.
T Consensus 271 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 350 (411)
T 4a1s_A 271 NSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLG 350 (411)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 999999999999999988876411 0 11456778888999999999999999988754 11 11245778888
Q ss_pred HHHHhcCcHHHHHHHHHHHHHh
Q 040367 363 DGLCKNSYIVEAVELFRTLRIL 384 (400)
Q Consensus 363 ~~~~~~g~~~~a~~~~~~~~~~ 384 (400)
..|.+.|++++|.+.+++..+.
T Consensus 351 ~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 351 NAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHH
Confidence 9999999999999999998754
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.71 E-value=1.9e-15 Score=131.17 Aligned_cols=281 Identities=14% Similarity=0.071 Sum_probs=212.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccc
Q 040367 84 TPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPN----VFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEG 159 (400)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 159 (400)
......+......+...|++++|...|++..+.+ +.+ ..++..+...+...|++++|...+++.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a----------- 73 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD----------- 73 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-----------
Confidence 3455566778888999999999999999999874 333 357888999999999999998886664
Q ss_pred chHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C-CCCHHHHHHHHHHHHhCCC----
Q 040367 160 FVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQG----V-QPNVVTFNVIMDELCKNGK---- 230 (400)
Q Consensus 160 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~---- 230 (400)
+.+...... .+....++..+...+...|++++|...+++..+.. . .....++..+...+...|+
T Consensus 74 -----l~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 146 (406)
T 3sf4_A 74 -----LTLARTIGD--QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 146 (406)
T ss_dssp -----HHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred -----HHHHHhccc--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccc
Confidence 233322211 11235578888899999999999999999887531 0 1114477888889999999
Q ss_pred ----------------hHHHHHHHHHHHHc----CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC----
Q 040367 231 ----------------MDEASRLLDLMIQI----GVR-PNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGC-THT---- 284 (400)
Q Consensus 231 ----------------~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~---- 284 (400)
+++|...+.+..+. +.. ....++..+...+...|++++|...+++..+... .++
T Consensus 147 ~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 226 (406)
T 3sf4_A 147 PGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE 226 (406)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 99999999887653 111 1235677888999999999999999999875321 111
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-chhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCC-CCC----
Q 040367 285 VFSYSILINGYCKNKEIEGALSLYGEMLSK----GIKP-DVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGV-AAD---- 354 (400)
Q Consensus 285 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~---- 354 (400)
...+..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...++++.+... .++
T Consensus 227 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 306 (406)
T 3sf4_A 227 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE 306 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 237888899999999999999999988753 1111 145778888999999999999999999876411 112
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 355 TWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 355 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
..++..+...|...|++++|.+.+++..+
T Consensus 307 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 307 GRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56788899999999999999999999874
No 56
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.71 E-value=3e-14 Score=115.13 Aligned_cols=202 Identities=15% Similarity=0.005 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 040367 52 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLING 131 (400)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (400)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3445566666666666666666666666553 2345556666666666666666666666666553 3345555556666
Q ss_pred HHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 040367 132 LYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGV 211 (400)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 211 (400)
+...|++++|...++++...+ . .+.+...+..+..++...|++++|...++++.+..
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~---------------------~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 171 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDT---------------------L-YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN- 171 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCT---------------------T-CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHhHHHHHHHHHHHHHhCc---------------------c-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 666666444444444332200 0 01233445555555555666666666665555442
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040367 212 QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM 279 (400)
Q Consensus 212 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 279 (400)
+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 172 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 2334455555555555555555555555555432 223444445555555555555555555555544
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.71 E-value=3e-15 Score=120.22 Aligned_cols=201 Identities=14% Similarity=0.099 Sum_probs=106.8
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIK 95 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (400)
+..+|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 34456666666677777777777777776653 3356666666667777777777777777666653 235556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCC
Q 040367 96 GLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDEN 175 (400)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 175 (400)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.. ..
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-----------------------~~ 155 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVE-----------------------LN 155 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH-----------------------HC
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-----------------------hC
Confidence 6666677777777666666553 34555666666666666665544444444322 11
Q ss_pred CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 040367 176 INPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI 244 (400)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 244 (400)
+.+...+..+..++...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 156 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 156 -ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp -TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 2244455555666666666666666666655542 334555555555666666666666666665554
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.71 E-value=1.8e-15 Score=131.71 Aligned_cols=278 Identities=13% Similarity=0.038 Sum_probs=211.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHH
Q 040367 53 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNA----VTFTSLIKGLCAESRIMEAAALFTKLRVF----G-CEPNVF 123 (400)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 123 (400)
..+..+...+...|++++|+..++++.+.+.. +. ..+..+...+...|++++|...+++..+. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34556777889999999999999999987422 33 46888889999999999999999987654 1 123456
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC--------
Q 040367 124 TYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYAND-------- 195 (400)
Q Consensus 124 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------- 195 (400)
++..+...+...|++++|...+++. +++...... .+....++..+...+...|+
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~a----------------l~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 189 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERH----------------LTLARQLGD--RLSEGRALYNLGNVYHAKGKHLGQRNPG 189 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH----------------HHHHHHHTC--HHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH----------------HHHHHHhhc--hHHHHHHHHHHHHHHHHcCcccccccch
Confidence 7888999999999999999886654 333333221 12235578888899999999
Q ss_pred ---------HHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CC----HHhHHHH
Q 040367 196 ---------WNEAKCLLIEMMDQ----GV-QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR-PN----AFVYNTL 256 (400)
Q Consensus 196 ---------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 256 (400)
+++|++.+++..+. +. +....++..+...+...|++++|...+++..+.... .+ ..++..+
T Consensus 190 ~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 269 (411)
T 4a1s_A 190 KFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNL 269 (411)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 99999999887642 11 122357788888999999999999999998764211 11 2367888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCchhhHHHH
Q 040367 257 MDGFCLTGRVNRAKELFVSMESMGCT-----HTVFSYSILINGYCKNKEIEGALSLYGEMLSKG-----IKPDVVIYNTL 326 (400)
Q Consensus 257 ~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l 326 (400)
..+|...|++++|...+++..+.... ....++..+...+...|++++|.+.+++..+.. ......++..+
T Consensus 270 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 349 (411)
T 4a1s_A 270 GNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSL 349 (411)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 99999999999999999988764211 124677889999999999999999999887641 11123477788
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHc
Q 040367 327 FVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 327 ~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
...+...|++++|...++++.+.
T Consensus 350 a~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 350 GNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHH
Confidence 89999999999999999998875
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.70 E-value=3e-14 Score=112.83 Aligned_cols=205 Identities=9% Similarity=-0.023 Sum_probs=171.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHH
Q 040367 119 EPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNE 198 (400)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 198 (400)
+.+...+..+...+...|++++|...++++.. .. +.+...+..+..++...|++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-----------------------~~-~~~~~~~~~l~~~~~~~~~~~~ 60 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALK-----------------------SD-PKNELAWLVRAEIYQYLKVNDK 60 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------HC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-----------------------hC-ccchHHHHHHHHHHHHcCChHH
Confidence 33577888899999999997777776666533 21 3457788999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 040367 199 AKCLLIEMMDQGVQPNVVTFNVIMDELCKN-GKMDEASRLLDLMIQIGVRP-NAFVYNTLMDGFCLTGRVNRAKELFVSM 276 (400)
Q Consensus 199 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 276 (400)
|.+.++++.+.. +.+..++..+...+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++
T Consensus 61 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 139 (225)
T 2vq2_A 61 AQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRS 139 (225)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999998864 45788899999999999 99999999999999832233 3677888999999999999999999999
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 277 ESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 277 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
.+.. +.+...+..+...+...|++++|.+.++++.+.....+...+..+...+...|+.+.|..+++.+.+.
T Consensus 140 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 140 LAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8875 55688899999999999999999999999988653246777788888889999999999999998865
No 60
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.70 E-value=4.1e-13 Score=126.77 Aligned_cols=312 Identities=12% Similarity=0.086 Sum_probs=192.9
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 040367 29 KNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAA 108 (400)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 108 (400)
..+++++|.++.++. -+..+|..+..++...|++++|.+.|.+. .|...|..++.++.+.|++++|.+
T Consensus 1088 ~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 455666666666544 13556666666666666666666666443 255556666666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-----HHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhH
Q 040367 109 LFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEE-----MASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTY 183 (400)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 183 (400)
.+...++.. +++.....++.+|++.++++....+.+. ....+..+...|++++|...|... ..|
T Consensus 1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny 1224 (1630)
T 1xi4_A 1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 1224 (1630)
T ss_pred HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHH
Confidence 666655542 2222233466666666665533222210 000111112255566666666653 367
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 040367 184 TSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT 263 (400)
Q Consensus 184 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 263 (400)
..+..++.+.|++++|++.+++. .+..+|..+..+|...|++..|......+ ..++..+..++..|.+.
T Consensus 1225 ~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~ 1293 (1630)
T 1xi4_A 1225 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDR 1293 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHc
Confidence 88888888888888888888776 25577888888888888888887766542 23556677888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC------chhhHHHHHHHHHhhCc
Q 040367 264 GRVNRAKELFVSMESMGCTHTVFSYSILINGYCKN--KEIEGALSLYGEMLSKGIKP------DVVIYNTLFVVLFEIHQ 335 (400)
Q Consensus 264 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~ 335 (400)
|.+++|+.+++...... +.....|+.+...|++. ++..++.+.|..-.. +++ +...|.-+...|.+.|+
T Consensus 1294 G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e 1370 (1630)
T 1xi4_A 1294 GYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEE 1370 (1630)
T ss_pred CCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhccc
Confidence 99999999998887665 45566777777777664 234444444443222 222 45678888888888888
Q ss_pred HHHHHHHH-------------HHHHHcCCCCCHHHHHHHHHHHHhcC---------------cHHHHHHHHH
Q 040367 336 VERAFKLF-------------DEMQRDGVAADTWTYRTFIDGLCKNS---------------YIVEAVELFR 379 (400)
Q Consensus 336 ~~~a~~~~-------------~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~ 379 (400)
++.|.... +..+. ...+...|...+..|...+ +++++.++|+
T Consensus 1371 ~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1371 YDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 88887322 22111 2346777777777766655 6666666655
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.70 E-value=3.3e-15 Score=126.13 Aligned_cols=277 Identities=14% Similarity=0.077 Sum_probs=197.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHH
Q 040367 89 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPN----VFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKA 164 (400)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a 164 (400)
.+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++.
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a---------------- 69 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD---------------- 69 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------
Confidence 34445566777788888888888877763 223 356777788888888888877776554
Q ss_pred HHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCCC---------
Q 040367 165 KELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGV-QPN----VVTFNVIMDELCKNGK--------- 230 (400)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------- 230 (400)
+++...... .+....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 70 l~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 147 (338)
T 3ro2_A 70 LTLARTIGD--QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQD 147 (338)
T ss_dssp HHHHHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC-
T ss_pred HHHhhcccc--cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhh
Confidence 222222211 112355778888899999999999999988765310 112 3467778888888899
Q ss_pred -----------hHHHHHHHHHHHHc----CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C----ChhhHH
Q 040367 231 -----------MDEASRLLDLMIQI----GVR-PNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCT-H----TVFSYS 289 (400)
Q Consensus 231 -----------~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~ 289 (400)
+++|...+++.... +.. ....++..+...+...|++++|...+++..+.... + ....+.
T Consensus 148 ~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (338)
T 3ro2_A 148 TGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYS 227 (338)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 89999888877543 111 12346777888999999999999999988653100 1 123678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-chhhHHHHHHHHHhhCcHHHHHHHHHHHHHc----CC-CCCHHHHH
Q 040367 290 ILINGYCKNKEIEGALSLYGEMLSKG----IKP-DVVIYNTLFVVLFEIHQVERAFKLFDEMQRD----GV-AADTWTYR 359 (400)
Q Consensus 290 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 359 (400)
.+...+...|++++|.+.+++..+.. ..+ ...++..+...+...|++++|...++++.+. +. .....++.
T Consensus 228 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 307 (338)
T 3ro2_A 228 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACW 307 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 88899999999999999999887531 111 1456778888999999999999999988754 11 11245777
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHh
Q 040367 360 TFIDGLCKNSYIVEAVELFRTLRIL 384 (400)
Q Consensus 360 ~l~~~~~~~g~~~~a~~~~~~~~~~ 384 (400)
.+...|.+.|++++|.+.+++..+.
T Consensus 308 ~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 308 SLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHH
Confidence 8999999999999999999999863
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.69 E-value=4.1e-15 Score=125.53 Aligned_cols=275 Identities=13% Similarity=0.071 Sum_probs=182.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHH
Q 040367 56 NILINCFCKMGRVSHGFVVLGRILRSCFTPN----AVTFTSLIKGLCAESRIMEAAALFTKLRVF----GCE-PNVFTYN 126 (400)
Q Consensus 56 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~ 126 (400)
......+...|++++|...++++.+.... + ...+..+...+...|++++|.+.+++.... +.. ....++.
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 33445555666666666666666554211 2 244555666666666666666666654432 111 1245666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC-----------
Q 040367 127 TLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYAND----------- 195 (400)
Q Consensus 127 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------- 195 (400)
.+...+...|++++|...+++.. ++...... ......++..+...+...|+
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al----------------~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 149 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHL----------------DISRELND--KVGEARALYNLGNVYHAKGKSFGCPGPQDTG 149 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH----------------HHHHHTTC--HHHHHHHHHHHHHHHHHHHHTSSSSSCC---
T ss_pred HHHHHHHHccCHHHHHHHHHHHH----------------HHHHHhcC--chHHHHHHHHHHHHHHHcCcccccchhhhhh
Confidence 77777777888777777655542 22222110 01123467777888888888
Q ss_pred ---------HHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-----CCCHHhHHHH
Q 040367 196 ---------WNEAKCLLIEMMDQ----GV-QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGV-----RPNAFVYNTL 256 (400)
Q Consensus 196 ---------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l 256 (400)
+++|...+++.... +. +.....+..+...+...|++++|...+++..+... .....++..+
T Consensus 150 ~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 229 (338)
T 3ro2_A 150 EFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 229 (338)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 88998888876542 11 11234677788889999999999999998876411 1112367788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C-CCchhhHHHH
Q 040367 257 MDGFCLTGRVNRAKELFVSMESMGCT-HT----VFSYSILINGYCKNKEIEGALSLYGEMLSKG----I-KPDVVIYNTL 326 (400)
Q Consensus 257 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l 326 (400)
...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...++++.+.. . .....++..+
T Consensus 230 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 309 (338)
T 3ro2_A 230 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL 309 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 88999999999999999988653211 11 4567888899999999999999999887641 1 1113467788
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHc
Q 040367 327 FVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 327 ~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
...+...|++++|...++++.+.
T Consensus 310 a~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 310 GNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHcCChHHHHHHHHHHHHH
Confidence 89999999999999999998875
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.68 E-value=1.5e-14 Score=127.66 Aligned_cols=215 Identities=15% Similarity=0.018 Sum_probs=186.7
Q ss_pred hHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 040367 161 VDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDW-NEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLD 239 (400)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 239 (400)
+++++..++...... +.+...+..+..++...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 567777777766553 45788899999999999999 99999999999874 4568899999999999999999999999
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--------CCHH
Q 040367 240 LMIQIGVRPNAFVYNTLMDGFCLT---------GRVNRAKELFVSMESMGCTHTVFSYSILINGYCKN--------KEIE 302 (400)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 302 (400)
++.+. .|+...+..+..++... |++++|...++++.+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99986 46678899999999999 99999999999999886 56788999999999998 9999
Q ss_pred HHHHHHHHHHhCCCC--CchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 040367 303 GALSLYGEMLSKGIK--PDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRT 380 (400)
Q Consensus 303 ~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 380 (400)
+|.+.|+++.+.... .+...|..+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|++.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999986421 377889999999999999999999999999863 34677889999999999999999986655
Q ss_pred H
Q 040367 381 L 381 (400)
Q Consensus 381 ~ 381 (400)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 4
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.68 E-value=1.9e-14 Score=123.86 Aligned_cols=300 Identities=10% Similarity=0.019 Sum_probs=180.8
Q ss_pred HhccCChhHHHHHHHHHHhC--CCCCCHH--HHHHHHHH--HHhcCChhhHH-----------HHHHHHHhcCCCCChhh
Q 040367 27 LAKNKHYDTVLSLFKRLNST--GLFPDLY--TYNILINC--FCKMGRVSHGF-----------VVLGRILRSCFTPNAVT 89 (400)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~--~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~ 89 (400)
+.+.+++++|..+++++.+. .+..+.. .|-.++.. ....++.+.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 46789999999999998654 2323433 33333322 22334444444 6677665431 12222
Q ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcc
Q 040367 90 ------FTSLIKGLCAESRIMEAAALFTKLRVF----GCEP-NVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVE 158 (400)
Q Consensus 90 ------~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 158 (400)
+......+...|++++|...+++..+. +-++ ...++..+...+...|+++.|+..+++.
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a---------- 169 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA---------- 169 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----------
Confidence 223566788999999999999998764 1111 3567889999999999999998886554
Q ss_pred cchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCCChHH
Q 040367 159 GFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGV-QPN----VVTFNVIMDELCKNGKMDE 233 (400)
Q Consensus 159 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~ 233 (400)
++++...... .+....+++.+..+|...|++++|+..+++..+... .++ ..++..+..+|...|++++
T Consensus 170 ------l~~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 170 ------YEIYKEHEAY-NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED 242 (383)
T ss_dssp ------HHHHHTCSTT-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ------HHHHHhCccc-hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 3343332110 011245788888899999999999999988775310 011 2366677777888888888
Q ss_pred HHHHHHHHHHc----CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCChhhHHHHHHHHHhcCC---H
Q 040367 234 ASRLLDLMIQI----GV-RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG----CTHTVFSYSILINGYCKNKE---I 301 (400)
Q Consensus 234 a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~ 301 (400)
|...+++..+. +. +....++..+..+|...|++++|...+++..+.. -+.....+..+...+...|+ +
T Consensus 243 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 322 (383)
T 3ulq_A 243 AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI 322 (383)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 88888777662 22 2234556667777777777777777777665421 01111223445555555555 4
Q ss_pred HHHHHHHHHHHhCCCCC-chhhHHHHHHHHHhhCcHHHHHHHHHHHHH
Q 040367 302 EGALSLYGEMLSKGIKP-DVVIYNTLFVVLFEIHQVERAFKLFDEMQR 348 (400)
Q Consensus 302 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 348 (400)
++|+.++++. +..| ....+..+...+...|++++|...++++.+
T Consensus 323 ~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 323 QGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444444433 1111 122344455555556666666665555543
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.68 E-value=4.4e-14 Score=108.16 Aligned_cols=173 Identities=16% Similarity=0.101 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 040367 214 NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILIN 293 (400)
Q Consensus 214 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 293 (400)
++.+|..+...+...|++++|...|+++++.. +.+..++..+..+|...|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 44555566666666666666666666665543 2245555566666666666666666666665554 334555555566
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHH
Q 040367 294 GYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVE 373 (400)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 373 (400)
.+...++++.+.+.+.+..+... .+...+..+..++...|++++|++.|+++.+.. +.+...|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 66666666666666666665432 245556666666666666666666666666642 2356666666666777777777
Q ss_pred HHHHHHHHHHhcccchhHH
Q 040367 374 AVELFRTLRILKCELDIRA 392 (400)
Q Consensus 374 a~~~~~~~~~~~~~p~~~~ 392 (400)
|++.|++.++ +.|+...
T Consensus 160 A~~~~~~al~--~~p~~a~ 176 (184)
T 3vtx_A 160 AVKYFKKALE--KEEKKAK 176 (184)
T ss_dssp HHHHHHHHHH--TTHHHHH
T ss_pred HHHHHHHHHh--CCccCHH
Confidence 7777776665 3454433
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.67 E-value=5.1e-14 Score=121.21 Aligned_cols=298 Identities=7% Similarity=-0.050 Sum_probs=207.9
Q ss_pred HHhcCChhhHHHHHHHHHhc--CCCCCh--hhHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHcCCCCCHH-
Q 040367 62 FCKMGRVSHGFVVLGRILRS--CFTPNA--VTFTSLIKG--LCAESRIMEAA-----------ALFTKLRVFGCEPNVF- 123 (400)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~--~~~~~~--~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~- 123 (400)
+.+.+++++|..+++++.+. ....+. ..|-.++.. ....+.++.+. +.++.+.... .+..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 46789999999999998764 222333 333333322 22234444444 6666665432 2222
Q ss_pred -----HHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCC-ChHhHHHHHHHHHhcCCHH
Q 040367 124 -----TYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINP-DVVTYTSVIRGFCYANDWN 197 (400)
Q Consensus 124 -----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 197 (400)
.+......+...|++++|+..+++..... ...+-++ ...++..+..++...|+++
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------------------~~~~~~~~~a~~~~~lg~~~~~~~~~~ 160 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKL-------------------IFVKDRIEKAEFFFKMSESYYYMKQTY 160 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTG-------------------GGCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-------------------hhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 22236677788899888888777664421 0111011 3467888999999999999
Q ss_pred HHHHHHHHHHhCC--C----CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHHhcCCH
Q 040367 198 EAKCLLIEMMDQG--V----QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR-PN----AFVYNTLMDGFCLTGRV 266 (400)
Q Consensus 198 ~a~~~~~~~~~~~--~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~ 266 (400)
+|+..+++..+.- . +....++..+..+|...|++++|...++++.+.... ++ ..++..+..+|...|++
T Consensus 161 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 240 (383)
T 3ulq_A 161 FSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY 240 (383)
T ss_dssp HHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCH
Confidence 9999999987531 1 112457888889999999999999999998764111 11 24778899999999999
Q ss_pred HHHHHHHHHHHhc----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCchhhHHHHHHHHHhhCc--
Q 040367 267 NRAKELFVSMESM----GC-THTVFSYSILINGYCKNKEIEGALSLYGEMLSK----GIKPDVVIYNTLFVVLFEIHQ-- 335 (400)
Q Consensus 267 ~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~-- 335 (400)
++|...+++..+. +. +....++..+...+...|++++|.+.+++..+. +-+.....+..+...+...|+
T Consensus 241 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 320 (383)
T 3ulq_A 241 EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEE 320 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHH
T ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 9999999998772 22 334667889999999999999999999988764 111122335667788888898
Q ss_pred -HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 336 -VERAFKLFDEMQRDGVAA-DTWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 336 -~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
+++|+.++++. +..| ....+..+...|...|++++|.+.+++..+
T Consensus 321 ~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 321 AIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777665 2222 355677899999999999999999999975
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.66 E-value=1.7e-13 Score=114.13 Aligned_cols=218 Identities=10% Similarity=0.021 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHhCCCCCChHhHHHHHHHHHh-------cCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040367 162 DKAKELFLQMKDENINPDVVTYTSVIRGFCY-------ANDW-------NEAKCLLIEMMDQGVQPNVVTFNVIMDELCK 227 (400)
Q Consensus 162 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 227 (400)
++|...|++..... |.+...|..++..+.. .|++ ++|..+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666777766643 5577788888877753 5886 8999999999983124466789999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCC-HH-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCCHHHH
Q 040367 228 NGKMDEASRLLDLMIQIGVRPN-AF-VYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYC-KNKEIEGA 304 (400)
Q Consensus 228 ~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 304 (400)
.|++++|..+|+++++. .|+ .. ++..++..+.+.|++++|..+|++..+.. +.+...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999985 343 43 78899999999999999999999999875 445555554443322 36999999
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 040367 305 LSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDG-VAA--DTWTYRTFIDGLCKNSYIVEAVELFRTL 381 (400)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 381 (400)
.++|+++++... .+...|..++..+.+.|++++|..+|+++.+.. ++| ....|..++....+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999988643 367888999999999999999999999999863 344 4778899999999999999999999999
Q ss_pred HHh
Q 040367 382 RIL 384 (400)
Q Consensus 382 ~~~ 384 (400)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 68
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.66 E-value=1.2e-13 Score=121.18 Aligned_cols=307 Identities=9% Similarity=-0.038 Sum_probs=207.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040367 57 ILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRI---MEAAALFTKLRVFGCEPNVFTYNTLINGLY 133 (400)
Q Consensus 57 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 133 (400)
.+...+.+.|++++|.++|++..+.| +...+..+...|...|+. ++|...|++..+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35677788999999999999998875 344555666777778888 8999999998853 6667777777666
Q ss_pred hcC-----ChHHHHHHHHHHHcCCCCCCc---------ccc---hHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH
Q 040367 134 RTG-----HTIVALNLFEEMASGNGEFGV---------EGF---VDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDW 196 (400)
Q Consensus 134 ~~~-----~~~~a~~~~~~~~~~~~~~~~---------~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (400)
..+ ++++|+.+|++....+..... .+. -..+.+.+......+ +...+..+...|...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 665 778999999999886654322 111 134555555555544 345667778888888866
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc----CCHHHH
Q 040367 197 NEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNG---KMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT----GRVNRA 269 (400)
Q Consensus 197 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a 269 (400)
+++......+.+.-...++..+..+...|...| +.++|...|++..+.|. ++...+..+...|... +++++|
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 555555333332211223337888888899999 99999999999999863 4555556677777655 799999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhC-----cHHHHHH
Q 040367 270 KELFVSMESMGCTHTVFSYSILING-Y--CKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIH-----QVERAFK 341 (400)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~ 341 (400)
...|++.. . -++..+..|... + ...+++++|.++|++..+.| +...+..+...|. .| ++++|..
T Consensus 237 ~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 237 QALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 99999988 3 466677777777 4 56899999999999999887 6677777887776 56 9999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHhcc
Q 040367 342 LFDEMQRDGVAADTWTYRTFIDGLCK----NSYIVEAVELFRTLRILKC 386 (400)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 386 (400)
+|++.. . .+......|...|.. ..++++|.++|++..+.|.
T Consensus 309 ~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 309 HFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 999887 3 367777888877766 3499999999999988764
No 69
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.65 E-value=5.2e-12 Score=114.66 Aligned_cols=385 Identities=11% Similarity=0.006 Sum_probs=262.9
Q ss_pred chhHHHHhcCCCCCChhhHHHHHHHHhccCC---hhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCh--------h
Q 040367 2 CIFDYMLNMRPSPPPVCSFNILFGCLAKNKH---YDTVLSLFKRLNSTG-LFPDLYTYNILINCFCKMGRV--------S 69 (400)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~ 69 (400)
.+|++++...|. +...|...+..-.+.++ ++.+..+|++..... .+|++..|...+......++. +
T Consensus 87 ~vyEraL~~fP~--~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~ 164 (679)
T 4e6h_A 87 ETFDKLHDRFPL--MANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARN 164 (679)
T ss_dssp HHHHHHHHHCTT--CHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHH
T ss_pred HHHHHHHHHCCC--CHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHH
Confidence 368888888877 88889999999999999 999999999998863 148999998888776665543 3
Q ss_pred hHHHHHHHHHhc-CC-CC-ChhhHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--
Q 040367 70 HGFVVLGRILRS-CF-TP-NAVTFTSLIKGLC---------AESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRT-- 135 (400)
Q Consensus 70 ~a~~~~~~~~~~-~~-~~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 135 (400)
...++|+.++.. |. .+ +...|...+.... ..++++.+..+|++.+......-..+|......-...
T Consensus 165 ~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~ 244 (679)
T 4e6h_A 165 IVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ 244 (679)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc
Confidence 345788877653 54 44 4568888777544 2446788999999988532111233443222211111
Q ss_pred -----------CChHHHHHHHHHHHcCC-------CC----------C--C--c----------------c-------cc
Q 040367 136 -----------GHTIVALNLFEEMASGN-------GE----------F--G--V----------------E-------GF 160 (400)
Q Consensus 136 -----------~~~~~a~~~~~~~~~~~-------~~----------~--~--~----------------~-------~~ 160 (400)
.++..|...+.++.... +. + . . . ..
T Consensus 245 ~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~ 324 (679)
T 4e6h_A 245 LTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLH 324 (679)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHH
T ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhh
Confidence 12233344444321100 00 0 0 0 0 01
Q ss_pred hHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 040367 161 VDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAK-CLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLD 239 (400)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 239 (400)
.+++..+|++.... .+-....|...+..+...|+.++|. .+|++.... .+.+...|...+....+.|+++.|.++|+
T Consensus 325 ~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iye 402 (679)
T 4e6h_A 325 KARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTIL 402 (679)
T ss_dssp HHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 23345567766654 2456778888888888889999997 999999875 45567777788888889999999999999
Q ss_pred HHHHcCC---------CC------------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 040367 240 LMIQIGV---------RP------------NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKN 298 (400)
Q Consensus 240 ~~~~~~~---------~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 298 (400)
++..... .| ...+|...+....+.|+.+.|..+|..+.+.........|...+..-.+.
T Consensus 403 k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Confidence 9886410 13 13367777888888899999999999998751123344454444333344
Q ss_pred -CCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCcHHHHH
Q 040367 299 -KEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAA--DTWTYRTFIDGLCKNSYIVEAV 375 (400)
Q Consensus 299 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 375 (400)
++++.|.++|+..++. .+.+...|...+......|+.+.|..+|++++.....+ ....|..++..-.+.|+.+.+.
T Consensus 483 ~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4589999999999886 34466677788888888999999999999998863322 3567888888888899999999
Q ss_pred HHHHHHHHhcccchhHHH
Q 040367 376 ELFRTLRILKCELDIRAY 393 (400)
Q Consensus 376 ~~~~~~~~~~~~p~~~~~ 393 (400)
++.+++.+. .|+....
T Consensus 562 ~v~~R~~~~--~P~~~~~ 577 (679)
T 4e6h_A 562 TLEKRFFEK--FPEVNKL 577 (679)
T ss_dssp HHHHHHHHH--STTCCHH
T ss_pred HHHHHHHHh--CCCCcHH
Confidence 999999875 3443333
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.64 E-value=1.3e-13 Score=105.58 Aligned_cols=167 Identities=15% Similarity=0.092 Sum_probs=150.1
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 040367 179 DVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMD 258 (400)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 258 (400)
+...|..+...+...|++++|++.|++.++.+ +.+...+..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 67789999999999999999999999999875 5578899999999999999999999999998874 336777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHH
Q 040367 259 GFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVER 338 (400)
Q Consensus 259 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 338 (400)
.+...++++.|...+.+..... +.+...+..+...+...|++++|++.|++..+..+ .+..+|..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998876 56788899999999999999999999999998753 367889999999999999999
Q ss_pred HHHHHHHHHHc
Q 040367 339 AFKLFDEMQRD 349 (400)
Q Consensus 339 a~~~~~~~~~~ 349 (400)
|++.|+++++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999999885
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.63 E-value=2.1e-12 Score=107.52 Aligned_cols=226 Identities=10% Similarity=0.029 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCC
Q 040367 104 MEAAALFTKLRVFGCEPNVFTYNTLINGLYR-------TGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENI 176 (400)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 176 (400)
++|..+|++..... +.+...|..++..+.. .|+...+ .+..++|...|++....-.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~----------------~~~~~~A~~~~~rAl~~~~ 95 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNA----------------KLFSDEAANIYERAISTLL 95 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHH----------------HHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhc----------------ccchHHHHHHHHHHHHHhC
Confidence 67888888888764 5578888888877764 3554111 0113566666666665211
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 040367 177 NPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVV-TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNT 255 (400)
Q Consensus 177 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 255 (400)
+.+...|..++..+.+.|++++|..+|+++.+.. +.+.. .|..+...+.+.|++++|..+|+++.+... .+...|..
T Consensus 96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~ 173 (308)
T 2ond_A 96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVT 173 (308)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHH
Confidence 4466789999999999999999999999999853 22333 789999999999999999999999998642 34555544
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--chhhHHHHHHHHH
Q 040367 256 LMDGFC-LTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKG-IKP--DVVIYNTLFVVLF 331 (400)
Q Consensus 256 l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~ 331 (400)
.+.... ..|++++|..+|+...+.. +.+...|..++..+.+.|++++|..+|+++++.. .+| ....|..++....
T Consensus 174 ~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~ 252 (308)
T 2ond_A 174 AALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 252 (308)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 443322 3699999999999998875 5578889999999999999999999999999863 344 3567888899999
Q ss_pred hhCcHHHHHHHHHHHHHc
Q 040367 332 EIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~ 349 (400)
..|+.+.|..+++++.+.
T Consensus 253 ~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 253 NIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHSCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999999886
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=5.9e-15 Score=123.17 Aligned_cols=177 Identities=15% Similarity=0.075 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-
Q 040367 52 LYTYNILINCFCKMGRVSHGFVVLGRILRS-------CFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVF------G- 117 (400)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~- 117 (400)
..++..+...+...|++++|...++++.+. ..+.....+..+...+...|++++|...+++.... +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456667777777777777777777777653 22334556777778888888888888888877654 2
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHH
Q 040367 118 CEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWN 197 (400)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (400)
.+....++..+...+...|++++|...++++ +++.+.......+.....+..+...+...|+++
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a----------------~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 170 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRA----------------LEIREKVLGKDHPDVAKQLNNLALLCQNQGKYE 170 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH----------------HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHH----------------HHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence 1234677889999999999999998886654 334443322222334567888889999999999
Q ss_pred HHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 040367 198 EAKCLLIEMMDQ------G-VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI 244 (400)
Q Consensus 198 ~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 244 (400)
+|++.++++.+. + .+....++..+..++...|++++|...++++.+.
T Consensus 171 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 171 EVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999998764 1 1223456777888888889999999988888763
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=1.6e-14 Score=120.51 Aligned_cols=177 Identities=15% Similarity=0.093 Sum_probs=133.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcc
Q 040367 86 NAVTFTSLIKGLCAESRIMEAAALFTKLRVF-------GCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVE 158 (400)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 158 (400)
+..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---------- 95 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDA---------- 95 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----------
Confidence 4567888999999999999999999998873 22345678889999999999999999886554
Q ss_pred cchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhCCCh
Q 040367 159 GFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQ------GV-QPNVVTFNVIMDELCKNGKM 231 (400)
Q Consensus 159 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~ 231 (400)
+++++.......+....++..+...+...|++++|...++++.+. +. +.....+..+...+...|++
T Consensus 96 ------l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 169 (311)
T 3nf1_A 96 ------LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKY 169 (311)
T ss_dssp ------HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred ------HHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Confidence 444444433332345667888999999999999999999998764 21 22345677788888889999
Q ss_pred HHHHHHHHHHHHc------CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 232 DEASRLLDLMIQI------GVRP-NAFVYNTLMDGFCLTGRVNRAKELFVSMES 278 (400)
Q Consensus 232 ~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 278 (400)
++|..+++++.+. +..| ...++..+..+|...|++++|...++++.+
T Consensus 170 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 170 EEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999988888764 1122 244667777888888888888888888765
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.60 E-value=1.3e-13 Score=121.66 Aligned_cols=214 Identities=9% Similarity=-0.049 Sum_probs=177.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCCh
Q 040367 102 RIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHT-IVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDV 180 (400)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 180 (400)
.++++.+.++...... +.+...+..+...+...|++ ++|+..|++.... . +.+.
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~-----------------------~-p~~~ 137 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL-----------------------E-PELV 137 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH-----------------------C-TTCH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh-----------------------C-CCCH
Confidence 4567777777766543 45788899999999999997 7777666665432 1 3457
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC---------CChHHHHHHHHHHHHcCCCCCHH
Q 040367 181 VTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKN---------GKMDEASRLLDLMIQIGVRPNAF 251 (400)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~ 251 (400)
..|..+..+|...|++++|+..|++..+.. |+...+..+..++... |++++|...++++.+.. +.+..
T Consensus 138 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 214 (474)
T 4abn_A 138 EAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGR 214 (474)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHH
Confidence 789999999999999999999999999864 6678888899999999 99999999999999874 34678
Q ss_pred hHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch
Q 040367 252 VYNTLMDGFCLT--------GRVNRAKELFVSMESMGCT---HTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDV 320 (400)
Q Consensus 252 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 320 (400)
.+..+..+|... |++++|...|++..+.. + .+...|..+..+|...|++++|.+.|+++.+.... +.
T Consensus 215 ~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~ 292 (474)
T 4abn_A 215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WP 292 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH
Confidence 888999999988 99999999999999875 4 57889999999999999999999999999987533 56
Q ss_pred hhHHHHHHHHHhhCcHHHHHHHHHH
Q 040367 321 VIYNTLFVVLFEIHQVERAFKLFDE 345 (400)
Q Consensus 321 ~~~~~l~~~~~~~~~~~~a~~~~~~ 345 (400)
..+..+..++...|++++|++.+.+
T Consensus 293 ~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 293 EPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7788888999999999999876544
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.59 E-value=6.7e-13 Score=113.98 Aligned_cols=247 Identities=10% Similarity=-0.005 Sum_probs=149.2
Q ss_pred CChhhHHHHHHHH--hccCChhHHHHHHHHHHhC--CCCCC--HHHHHHHHHH--HHhcCChhhHH---------HHHHH
Q 040367 15 PPVCSFNILFGCL--AKNKHYDTVLSLFKRLNST--GLFPD--LYTYNILINC--FCKMGRVSHGF---------VVLGR 77 (400)
Q Consensus 15 ~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~--~~~~~~~~~a~---------~~~~~ 77 (400)
|+...-+.+-..| .+.+++++|..+++++.+. .+..| ...|-.++.. ....+..+.+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 3444445555555 7899999999999987553 22233 3334444432 12223333333 66666
Q ss_pred HHhcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 040367 78 ILRSCFTPNA----VTFTSLIKGLCAESRIMEAAALFTKLRVFGC-EP----NVFTYNTLINGLYRTGHTIVALNLFEEM 148 (400)
Q Consensus 78 ~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 148 (400)
+.....+.+. ..+......+...|++++|...|++..+... .+ ...++..+...+...|+++.|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 6443211111 1233445567789999999999999876421 12 3567888999999999999988886554
Q ss_pred HcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHH
Q 040367 149 ASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQ----GVQ-PNVVTFNVIMD 223 (400)
Q Consensus 149 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~ 223 (400)
++++....... +....+++.+..+|...|++++|.+.+++..+. +.+ ....++..+..
T Consensus 168 ----------------l~~~~~~~~~~-~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 230 (378)
T 3q15_A 168 ----------------LDIYQNHPLYS-IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIAN 230 (378)
T ss_dssp ----------------HHHHHTSTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------HHHHHhCCCch-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333221100 113457788888899999999999999887652 111 11235566666
Q ss_pred HHHhCCChHHHHHHHHHHHHc----CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 224 ELCKNGKMDEASRLLDLMIQI----GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 278 (400)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 278 (400)
+|...|++++|...+++..+. +.+....++..+..++.+.|++++|...+++..+
T Consensus 231 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 231 SYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777777766651 1122244555566666666666666666666554
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.58 E-value=1.1e-11 Score=106.27 Aligned_cols=278 Identities=10% Similarity=0.006 Sum_probs=187.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHH
Q 040367 56 NILINCFCKMGRVSHGFVVLGRILRSCFTPNAV----TFTSLIKGLCAESRIMEAAALFTKLRVFGC-EPN----VFTYN 126 (400)
Q Consensus 56 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~ 126 (400)
......+...|++++|...+++........+.. .+..+...+...|++++|...+++...... ..+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334445566788888888887776653222221 455666777788888888888887665310 112 23456
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 040367 127 TLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEM 206 (400)
Q Consensus 127 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 206 (400)
.+...+...|++++|...+++. +++.........+.....+..+...+...|++++|...+++.
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~a----------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKA----------------FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG 161 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH----------------HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH----------------HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 7778888899988888876554 223322211100113446677888899999999999999998
Q ss_pred HhCCCC----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHhHH-----HHHHHHHhcCCHHHHHHHHHHH
Q 040367 207 MDQGVQ----PNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPN-AFVYN-----TLMDGFCLTGRVNRAKELFVSM 276 (400)
Q Consensus 207 ~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~a~~~~~~~ 276 (400)
...... ....++..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.
T Consensus 162 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 162 IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 241 (373)
T ss_dssp HHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 764211 1235677788889999999999999999876421211 11121 2334577899999999999998
Q ss_pred HhcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCch-hhHHHHHHHHHhhCcHHHHHHHHHHHHH
Q 040367 277 ESMGCTHT---VFSYSILINGYCKNKEIEGALSLYGEMLSK----GIKPDV-VIYNTLFVVLFEIHQVERAFKLFDEMQR 348 (400)
Q Consensus 277 ~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 348 (400)
......+. ...+..+...+...|++++|...+++.... +..++. ..+..+..++...|+.++|...+++...
T Consensus 242 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 242 AKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp CCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 76432211 224567788899999999999999887653 222222 2566677888899999999999998875
Q ss_pred c
Q 040367 349 D 349 (400)
Q Consensus 349 ~ 349 (400)
.
T Consensus 322 ~ 322 (373)
T 1hz4_A 322 L 322 (373)
T ss_dssp H
T ss_pred H
Confidence 3
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.58 E-value=5.7e-13 Score=114.42 Aligned_cols=313 Identities=11% Similarity=0.038 Sum_probs=210.2
Q ss_pred CCCHHHHHHHHHHH--HhcCChhhHHHHHHHHHhc--CCCCC--hhhHHHHHHH--HHhcCCHHHHH---------HHHH
Q 040367 49 FPDLYTYNILINCF--CKMGRVSHGFVVLGRILRS--CFTPN--AVTFTSLIKG--LCAESRIMEAA---------ALFT 111 (400)
Q Consensus 49 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~--~~~~~~~~~a~---------~~~~ 111 (400)
.|+...-..+-.-| ...+++++|.++++++.+. ....| ...|-.++.. ..-.+.+..+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34555555555555 7899999999999988663 22223 3333444332 11112222222 5566
Q ss_pred HHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHH
Q 040367 112 KLRVFGCEPN----VFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVI 187 (400)
Q Consensus 112 ~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 187 (400)
.+.....+.+ ...+......+...|++++|+..|++....... . .+.+....++..+.
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~----------------~--~~~~~~a~~~~~lg 148 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPF----------------V--SDDIEKAEFHFKVA 148 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGG----------------C--CCHHHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhh----------------C--CChHHHHHHHHHHH
Confidence 5543221111 112334556677889988888777766442110 0 00011345788889
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC--C---C-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCC-CCHHhHHHH
Q 040367 188 RGFCYANDWNEAKCLLIEMMDQG--V---Q-PNVVTFNVIMDELCKNGKMDEASRLLDLMIQI----GVR-PNAFVYNTL 256 (400)
Q Consensus 188 ~~~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l 256 (400)
.+|...|+++.|+..+++..+.. . . ....++..+..+|...|++++|...+++..+. +.. ....++..+
T Consensus 149 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 228 (378)
T 3q15_A 149 EAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNI 228 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999987531 1 1 12457788899999999999999999988764 111 123567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh-----cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCchhhHHHHH
Q 040367 257 MDGFCLTGRVNRAKELFVSMES-----MGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGI----KPDVVIYNTLF 327 (400)
Q Consensus 257 ~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~ 327 (400)
..+|...|++++|...+++..+ .. +....++..+...+.+.|++++|...+++..+... +.....+..+.
T Consensus 229 g~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~ 307 (378)
T 3q15_A 229 ANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQ 307 (378)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999876 33 33467788899999999999999999999887421 22233455666
Q ss_pred HHHHhhCc---HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 328 VVLFEIHQ---VERAFKLFDEMQRDGVAA-DTWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 328 ~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
..+...++ +.+|+..+++ .+..| ....+..+...|...|++++|.+.|++..+
T Consensus 308 ~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 308 AVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67777787 7777777765 22222 345667889999999999999999999975
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.58 E-value=6.4e-12 Score=107.69 Aligned_cols=275 Identities=9% Similarity=-0.016 Sum_probs=194.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHH
Q 040367 90 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPNV----FTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAK 165 (400)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~ 165 (400)
.......+...|++++|...+++........+. .++..+...+...|++++|...+++...
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------- 81 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ--------------- 81 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH---------------
Confidence 334455677899999999999998876422222 2566777888899998888888665432
Q ss_pred HHHHHHHhCCCC-CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhCCChHHHHHH
Q 040367 166 ELFLQMKDENIN-PDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQ----GVQ--P-NVVTFNVIMDELCKNGKMDEASRL 237 (400)
Q Consensus 166 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~ 237 (400)
+... .+.+ ....++..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...
T Consensus 82 -~~~~---~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 157 (373)
T 1hz4_A 82 -MARQ---HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 157 (373)
T ss_dssp -HHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -HHHh---cCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 2221 1100 11234667788899999999999999988753 221 2 234566788889999999999999
Q ss_pred HHHHHHcCCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hhhHH-----HHHHHHHhcCCHHHHHHH
Q 040367 238 LDLMIQIGVRP----NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHT-VFSYS-----ILINGYCKNKEIEGALSL 307 (400)
Q Consensus 238 ~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~a~~~ 307 (400)
+++........ ....+..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...
T Consensus 158 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 237 (373)
T 1hz4_A 158 ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW 237 (373)
T ss_dssp HHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99988753221 234677788889999999999999999876421222 11222 233447789999999999
Q ss_pred HHHHHhCCCCCc---hhhHHHHHHHHHhhCcHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCcHHHHHHHHH
Q 040367 308 YGEMLSKGIKPD---VVIYNTLFVVLFEIHQVERAFKLFDEMQRD----GVAADT-WTYRTFIDGLCKNSYIVEAVELFR 379 (400)
Q Consensus 308 ~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~ 379 (400)
+++.......++ ...+..+...+...|++++|...++++... |..++. ..+..+..++...|+.++|...++
T Consensus 238 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 317 (373)
T 1hz4_A 238 LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL 317 (373)
T ss_dssp HHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 998876532211 224567788899999999999999987653 222222 366677888999999999999999
Q ss_pred HHHH
Q 040367 380 TLRI 383 (400)
Q Consensus 380 ~~~~ 383 (400)
+...
T Consensus 318 ~al~ 321 (373)
T 1hz4_A 318 DALK 321 (373)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.53 E-value=8.1e-13 Score=101.06 Aligned_cols=162 Identities=17% Similarity=0.088 Sum_probs=89.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 040367 218 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCK 297 (400)
Q Consensus 218 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 297 (400)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3334444444455555555554444331 1234444455555555555555555555555443 3344555555555666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHH
Q 040367 298 NKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVEL 377 (400)
Q Consensus 298 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 377 (400)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666555542 2244555556666666666666666666666542 33456666666666667777777777
Q ss_pred HHHHHH
Q 040367 378 FRTLRI 383 (400)
Q Consensus 378 ~~~~~~ 383 (400)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.53 E-value=2.6e-12 Score=101.91 Aligned_cols=204 Identities=12% Similarity=-0.007 Sum_probs=159.9
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHH
Q 040367 177 NPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTL 256 (400)
Q Consensus 177 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 256 (400)
+.|+..+......+...|++++|+..|++..+...+++...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 346678888999999999999999999999987643788888889999999999999999999999864 3367788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc---hhhHHHH
Q 040367 257 MDGFCLTGRVNRAKELFVSMESMGCTHTV-------FSYSILINGYCKNKEIEGALSLYGEMLSKGIKPD---VVIYNTL 326 (400)
Q Consensus 257 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 326 (400)
..++...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.++++++. .|+ ...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 999999999999999999999875 4455 45888888999999999999999999986 344 4667777
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchhHHHH
Q 040367 327 FVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDIRAYN 394 (400)
Q Consensus 327 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 394 (400)
..++...|+ ..++++...+ ..+...+.... ....+.+++|+..+++..+. .|+.....
T Consensus 160 ~~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~ 217 (228)
T 4i17_A 160 GVLFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIK 217 (228)
T ss_dssp HHHHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHH
Confidence 777765543 4455555542 23444444433 34567899999999999974 56654433
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.52 E-value=3.9e-13 Score=110.36 Aligned_cols=233 Identities=15% Similarity=0.054 Sum_probs=162.9
Q ss_pred hcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 040367 134 RTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQ---- 209 (400)
Q Consensus 134 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 209 (400)
..|++++|+.. +++|++++++......+....++..+..++...|++++|+..++++.+.
T Consensus 13 ~~~~~~~A~~~----------------~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 76 (283)
T 3edt_B 13 GLVPRGSAVPL----------------CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKT 76 (283)
T ss_dssp CCSCSSSHHHH----------------HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH----------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 45666666666 4456666666665443445678889999999999999999999998754
Q ss_pred --CC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc------C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040367 210 --GV-QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI------G-VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM 279 (400)
Q Consensus 210 --~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 279 (400)
+. +....++..+..++...|++++|...+.++.+. . .+....++..+...|...|++++|...++++.+.
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 77 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp TCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 21 234567888999999999999999999998775 1 1224567888999999999999999999998765
Q ss_pred ------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCc-hhhHHHHHHHHHhhCc------HHH
Q 040367 280 ------G-CTHTVFSYSILINGYCKNKEIEGALSLYGEMLSK-------GIKPD-VVIYNTLFVVLFEIHQ------VER 338 (400)
Q Consensus 280 ------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~------~~~ 338 (400)
. .+....++..+...|...|++++|.+.++++.+. ...+. ...+..+.......+. +..
T Consensus 157 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (283)
T 3edt_B 157 YATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGE 236 (283)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 1 1234567888999999999999999999988863 11222 2233333333333222 222
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 339 AFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 339 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
+...++.... ..+....++..+...|...|++++|.+++++..+
T Consensus 237 ~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 237 YGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp ------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2222222111 1122356788899999999999999999999875
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.51 E-value=1.6e-12 Score=119.32 Aligned_cols=166 Identities=14% Similarity=0.024 Sum_probs=97.5
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 040367 179 DVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMD 258 (400)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 258 (400)
+..+++.+..++.+.|++++|++.|++.++.. +-+...+..+..++.+.|++++|+..|+++++.. +.+...+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556666666666666666666666666543 3345566666666666666666666666666543 223555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHH
Q 040367 259 GFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVER 338 (400)
Q Consensus 259 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 338 (400)
++...|++++|++.|++..+.+ +.+...|..+..+|...|++++|++.|+++++.... +...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 6666666666666666665554 334555666666666666666666666666554322 34555555666666666666
Q ss_pred HHHHHHHHHH
Q 040367 339 AFKLFDEMQR 348 (400)
Q Consensus 339 a~~~~~~~~~ 348 (400)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655554
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.51 E-value=1.3e-11 Score=97.81 Aligned_cols=193 Identities=12% Similarity=-0.033 Sum_probs=147.2
Q ss_pred cccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 040367 157 VEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASR 236 (400)
Q Consensus 157 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 236 (400)
..|++++|+..|++..+...+++...+..+..++...|++++|+..+++..+.. +.+...+..+..++...|++++|..
T Consensus 19 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~ 97 (228)
T 4i17_A 19 NAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYRDMKNNQEYIA 97 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHcccHHHHHH
Confidence 378999999999999987643777888889999999999999999999999864 4467788999999999999999999
Q ss_pred HHHHHHHcCCCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCCHHHHHHH
Q 040367 237 LLDLMIQIGVRPNA-------FVYNTLMDGFCLTGRVNRAKELFVSMESMGCTH--TVFSYSILINGYCKNKEIEGALSL 307 (400)
Q Consensus 237 ~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 307 (400)
.+++..+... .+. ..+..+...+...|++++|...|+++.+.. +. +...+..+..+|...| ...
T Consensus 98 ~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~~-----~~~ 170 (228)
T 4i17_A 98 TLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVLFYNNG-----ADV 170 (228)
T ss_dssp HHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHHH-----HHH
T ss_pred HHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHHHHHHH-----HHH
Confidence 9999998642 244 457788888999999999999999999874 33 4567777888876554 344
Q ss_pred HHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 040367 308 YGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTF 361 (400)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 361 (400)
++++...+.. +...+.... ....+.+++|+..+++..+.. +.+..+...+
T Consensus 171 ~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l 220 (228)
T 4i17_A 171 LRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQ 220 (228)
T ss_dssp HHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 5555554322 344443333 335678999999999999863 2244444433
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.51 E-value=4.9e-12 Score=96.63 Aligned_cols=166 Identities=14% Similarity=0.079 Sum_probs=145.8
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 040367 180 VVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDG 259 (400)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (400)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4567778889999999999999999988763 4578888999999999999999999999998874 4467888889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHH
Q 040367 260 FCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERA 339 (400)
Q Consensus 260 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 339 (400)
+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998875 5678889999999999999999999999998874 33678888999999999999999
Q ss_pred HHHHHHHHHc
Q 040367 340 FKLFDEMQRD 349 (400)
Q Consensus 340 ~~~~~~~~~~ 349 (400)
...++++.+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999998865
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.50 E-value=1.9e-12 Score=118.84 Aligned_cols=168 Identities=14% Similarity=0.090 Sum_probs=147.2
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 040367 212 QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSIL 291 (400)
Q Consensus 212 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 291 (400)
+.+...++.+...+.+.|++++|++.|+++++.. +-+...+..+..+|.+.|++++|+..|++..+.+ +.+...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3356789999999999999999999999999874 3357888999999999999999999999999886 5578899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcH
Q 040367 292 INGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYI 371 (400)
Q Consensus 292 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 371 (400)
..++...|++++|++.|+++++.... +...|..+..++...|++++|++.|+++++.. +-+...+..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 99999999999999999999987533 67789999999999999999999999999863 33688899999999999999
Q ss_pred HHHHHHHHHHHH
Q 040367 372 VEAVELFRTLRI 383 (400)
Q Consensus 372 ~~a~~~~~~~~~ 383 (400)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998875
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.47 E-value=2.7e-12 Score=105.33 Aligned_cols=166 Identities=13% Similarity=0.004 Sum_probs=117.1
Q ss_pred HhcCChhhHHHHHHHHHhc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHH
Q 040367 63 CKMGRVSHGFVVLGRILRS-------CFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVF------GC-EPNVFTYNTL 128 (400)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 128 (400)
...|++++|+..+++..+. +.+....++..+...+...|++++|...+++..+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666655542 21234567778888888889999998888887754 21 2346688899
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 129 INGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMD 208 (400)
Q Consensus 129 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 208 (400)
...+...|++++|...+++. ++++++......+....++..+...+...|++++|...++++.+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~a----------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 155 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRA----------------LEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE 155 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHH----------------HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHH----------------HHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999886554 44444443332234466788888999999999999999998876
Q ss_pred C------C-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 040367 209 Q------G-VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI 244 (400)
Q Consensus 209 ~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 244 (400)
. + .+....++..+..++...|++++|...++++.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 156 IYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4 1 1223456777778888888888888888877653
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.39 E-value=1.5e-10 Score=95.43 Aligned_cols=178 Identities=12% Similarity=-0.030 Sum_probs=101.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCC-Ch
Q 040367 102 RIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINP-DV 180 (400)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~ 180 (400)
++++|...|++. +..|...|++++|...|++. +++.... +-++ ..
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~a----------------l~~~~~~---~~~~~~a 77 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKA----------------ADYQKKA---GNEDEAG 77 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHH----------------HHHHHHT---TCHHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHH----------------HHHHHHh---CCHHHHH
Confidence 366666666654 33455667776666665443 2332222 1111 14
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CC--CHHHHHHHHHHHHhC-CChHHHHHHHHHHHHcCCCC-C----
Q 040367 181 VTYTSVIRGFCYANDWNEAKCLLIEMMDQGV---QP--NVVTFNVIMDELCKN-GKMDEASRLLDLMIQIGVRP-N---- 249 (400)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~---- 249 (400)
.+|+.+..+|...|++++|+..+++..+... .+ ...++..+...|... |++++|...+++..+..... +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 5677777788888888888888877664210 01 123556666666664 77777777776665531100 0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh------hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 250 AFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVF------SYSILINGYCKNKEIEGALSLYGEMLS 313 (400)
Q Consensus 250 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 313 (400)
..++..+...+...|++++|...|+++.+........ .|..+..++...|++++|...+++..+
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2345566666666677777777776666543221111 345555666666666666666666655
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.38 E-value=1.5e-10 Score=93.77 Aligned_cols=171 Identities=11% Similarity=0.005 Sum_probs=127.5
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC--CCHH
Q 040367 177 NPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPN---VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR--PNAF 251 (400)
Q Consensus 177 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~ 251 (400)
+.+...+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++.+.|++++|...|+++.+.... ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456777788889999999999999999998864 223 677888889999999999999999999986321 2245
Q ss_pred hHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCChhhH-----------------HHHHHHHHhcCCHHHHHH
Q 040367 252 VYNTLMDGFCL--------TGRVNRAKELFVSMESMGCTHTVFSY-----------------SILINGYCKNKEIEGALS 306 (400)
Q Consensus 252 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~a~~ 306 (400)
.+..+..++.. .|++++|...|+++.+.. +.+.... ..+...|...|++++|..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 67778888888 999999999999998874 3333444 445667777788888888
Q ss_pred HHHHHHhCCCCC--chhhHHHHHHHHHhh----------CcHHHHHHHHHHHHHc
Q 040367 307 LYGEMLSKGIKP--DVVIYNTLFVVLFEI----------HQVERAFKLFDEMQRD 349 (400)
Q Consensus 307 ~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 349 (400)
.|+++++..... ....+..+..++... |++++|...++++.+.
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 888777653221 234556666666655 7777888888777765
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.38 E-value=3.8e-11 Score=98.93 Aligned_cols=200 Identities=12% Similarity=0.038 Sum_probs=149.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC---C--CHHhHHHH
Q 040367 187 IRGFCYANDWNEAKCLLIEMMDQ----GVQPN-VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR---P--NAFVYNTL 256 (400)
Q Consensus 187 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l 256 (400)
...|...|++++|...|++..+. |.+++ ..+|+.+..+|.+.|++++|...+++.++.... + -..++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45677899999999999988653 22222 568889999999999999999999998764211 1 13578889
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhcCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch------hhHH
Q 040367 257 MDGFCLT-GRVNRAKELFVSMESMGCTH-T----VFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDV------VIYN 324 (400)
Q Consensus 257 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~ 324 (400)
..+|... |++++|+..|++..+..... + ..++..+...+...|++++|+..+++..+....... ..+.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9999996 99999999999987642111 1 356888999999999999999999999986433222 1567
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHH--hcCcHHHHHHHHHHHHHhcccchh
Q 040367 325 TLFVVLFEIHQVERAFKLFDEMQRDGVAAD------TWTYRTFIDGLC--KNSYIVEAVELFRTLRILKCELDI 390 (400)
Q Consensus 325 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~p~~ 390 (400)
.+..++...|++++|...+++..+. .|+ ...+..++.++. ..+++++|+..|+++.. +.|+.
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~--l~~~~ 273 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR--LDKWK 273 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC--CCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc--cHHHH
Confidence 7888899999999999999998764 232 123445666664 45779999999887764 45544
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.37 E-value=7.9e-10 Score=89.39 Aligned_cols=166 Identities=10% Similarity=0.037 Sum_probs=85.6
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-----CHH
Q 040367 178 PDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGV-QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRP-----NAF 251 (400)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~ 251 (400)
++..++..+..++...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|.+.+++|.+. .| +..
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~ 175 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNE 175 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchH
Confidence 3344444555666666666666666666655432 124455555666666666666666666666553 33 233
Q ss_pred hHHHHHHHH--HhcC--CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCC
Q 040367 252 VYNTLMDGF--CLTG--RVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKG---------IKP 318 (400)
Q Consensus 252 ~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~ 318 (400)
+...++.++ ...| +..+|..+|+++... .|+..+-..++.++.+.|++++|.+.++.+.+.. -+.
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~ 253 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY 253 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCC
Confidence 334444442 2223 566666666666543 3332222333335666666666666666544320 022
Q ss_pred chhhHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 319 DVVIYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 319 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
|+.++..++......|+ +|.++++++.+.
T Consensus 254 ~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 254 KPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 44444344444444454 556666666654
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.35 E-value=1.1e-10 Score=90.97 Aligned_cols=164 Identities=12% Similarity=0.014 Sum_probs=88.3
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHhCCChHHHHHHHHHHHH
Q 040367 180 VVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNV----------------IMDELCKNGKMDEASRLLDLMIQ 243 (400)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~ 243 (400)
...+......+...|++++|+..|++..+.. +.+...+.. +..++.+.|++++|...+++.++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344555667778899999999998888753 223444544 55555566666666666666655
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCchh
Q 040367 244 IGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKE--IEGALSLYGEMLSKGIKPDVV 321 (400)
Q Consensus 244 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 321 (400)
.. +.+...+..+..++...|++++|...|+++.+.. |.+...+..+..+|...|+ .+.+...++.... ..|...
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 43 2245555555666666666666666666665554 3345555555555544332 2233333433321 122222
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHHHH
Q 040367 322 IYNTLFVVLFEIHQVERAFKLFDEMQR 348 (400)
Q Consensus 322 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 348 (400)
.+.....++...|++++|...|+++++
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 233334444455566666666665554
No 92
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.35 E-value=4.4e-08 Score=86.45 Aligned_cols=346 Identities=10% Similarity=0.012 Sum_probs=213.7
Q ss_pred hhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhhHHHHHHHHHhc-CC-CCChhhHHHH
Q 040367 17 VCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR-VSHGFVVLGRILRS-CF-TPNAVTFTSL 93 (400)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l 93 (400)
...|...+..+-. |+++.+..+|++.... .|+...|...+....+.+. .+....+|+.++.. |. ..+...|...
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 3456666666655 8899999999999885 4799999998888777663 46677888888764 42 3467788888
Q ss_pred HHHHH----hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-------------CChHHHHHHHHHHH-------
Q 040367 94 IKGLC----AESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRT-------------GHTIVALNLFEEMA------- 149 (400)
Q Consensus 94 ~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~a~~~~~~~~------- 149 (400)
+..+. ..++.+.+..+|++.+......-...|......-... +.+..|..+++.+.
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 87654 3467888999999998742111122232222211111 11112222222111
Q ss_pred -----------cCCC-CCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 040367 150 -----------SGNG-EFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVT 217 (400)
Q Consensus 150 -----------~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 217 (400)
..++ .....+..+++..+|+++.... +.+...|...+..+.+.|+.+.|..++++.... +.+...
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l 248 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFL 248 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHH
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHH
Confidence 1111 0111122455677888877653 456777888888888889999999999998876 333333
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcC---------C---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh
Q 040367 218 FNVIMDELCKNGKMDEASRLLDLMIQIG---------V---RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTV 285 (400)
Q Consensus 218 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 285 (400)
+.. |....+.++. ++.+.+.- . .....+|...+....+.++.+.|..+|+.+ ... ..+.
T Consensus 249 ~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~ 319 (493)
T 2uy1_A 249 SLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGP 319 (493)
T ss_dssp HHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCH
T ss_pred HHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCCh
Confidence 222 2221111221 22222210 0 011244566666666778899999999998 321 2234
Q ss_pred hhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 040367 286 FSYSILINGYCKNK-EIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDG 364 (400)
Q Consensus 286 ~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (400)
..|...+..-...+ +.+.|..+|+...+.- +.++..|...+......|+.+.|..+|+++. .....|...+..
T Consensus 320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~f 393 (493)
T 2uy1_A 320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEY 393 (493)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 44443333222333 6999999999988753 2234556667777788899999999999873 257778888877
Q ss_pred HHhcCcHHHHHHHHHHHHH
Q 040367 365 LCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 365 ~~~~g~~~~a~~~~~~~~~ 383 (400)
-...|+.+.+..++++...
T Consensus 394 E~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 394 EFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 7778999999998888873
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.34 E-value=2.2e-10 Score=89.23 Aligned_cols=173 Identities=9% Similarity=0.016 Sum_probs=128.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHH----------------HHHHHHhcCCHHHHHHHHHHHHhcC
Q 040367 217 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNT----------------LMDGFCLTGRVNRAKELFVSMESMG 280 (400)
Q Consensus 217 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~ 280 (400)
.+......+...|++++|...|++..+... .+...+.. +..+|...|++++|...|++..+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 344455577889999999999999988632 24455666 8889999999999999999998886
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCc--HHHHHHHHHHHHHcCCCCCHHHH
Q 040367 281 CTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQ--VERAFKLFDEMQRDGVAADTWTY 358 (400)
Q Consensus 281 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~ 358 (400)
+.+...+..+..++...|++++|...|+++++..+. +...+..+..++...|+ .+.+...++.... ..|....+
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 567888999999999999999999999999987533 67788888888766554 4455666655542 22333344
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhcccchhHHHHHH
Q 040367 359 RTFIDGLCKNSYIVEAVELFRTLRILKCELDIRAYNCL 396 (400)
Q Consensus 359 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 396 (400)
.....++...|++++|+..|++.++ +.|+......+
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l 196 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHH
Confidence 5556677788999999999999987 46776655544
No 94
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.34 E-value=7.2e-10 Score=86.51 Aligned_cols=163 Identities=10% Similarity=-0.011 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC----CHHHHHHHHHHHHhcCCCCChhhHHH
Q 040367 215 VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG----RVNRAKELFVSMESMGCTHTVFSYSI 290 (400)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~ 290 (400)
+..+..+...|...+++++|...|++..+.| ++..+..+...|.. + ++++|...|++..+.+ ++..+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~ 90 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3344444444444444444444444444432 23334444444443 3 4555555555544332 3334444
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCC-CchhhHHHHHHHHHh----hCcHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 040367 291 LINGYCK----NKEIEGALSLYGEMLSKGIK-PDVVIYNTLFVVLFE----IHQVERAFKLFDEMQRDGVAADTWTYRTF 361 (400)
Q Consensus 291 l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 361 (400)
|...|.. .+++++|.++|++..+.+.. .+...+..|...|.. .+++++|..+|++..+. ..+...+..|
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~L 168 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWA 168 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHH
Confidence 4444444 44555555555555544321 013444444555544 44555555555555543 1223344444
Q ss_pred HHHHHhc-C-----cHHHHHHHHHHHHHhcc
Q 040367 362 IDGLCKN-S-----YIVEAVELFRTLRILKC 386 (400)
Q Consensus 362 ~~~~~~~-g-----~~~~a~~~~~~~~~~~~ 386 (400)
...|... | ++++|..+|++..+.|.
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 4444332 2 55556666655555553
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.33 E-value=2.8e-10 Score=81.68 Aligned_cols=130 Identities=14% Similarity=0.203 Sum_probs=89.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHH
Q 040367 252 VYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLF 331 (400)
Q Consensus 252 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 331 (400)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34556666667777777777777776654 3455666667777777777777777777776653 224556666777777
Q ss_pred hhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q 040367 332 EIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRIL 384 (400)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 384 (400)
..|++++|.++++++.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777777652 335666777777777788888888887777653
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.31 E-value=1.8e-10 Score=82.67 Aligned_cols=131 Identities=15% Similarity=0.151 Sum_probs=114.1
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 040367 18 CSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGL 97 (400)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (400)
.+|..+...+...|++++|+.+++++.+.+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 367888999999999999999999998764 4578888999999999999999999999998875 44677888899999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 040367 98 CAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASG 151 (400)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (400)
...|++++|.+.++++.... +.+..++..+...+...|++++|...++++...
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999999999999998875 557888999999999999988888888877543
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.31 E-value=3.9e-09 Score=85.37 Aligned_cols=245 Identities=8% Similarity=-0.044 Sum_probs=168.0
Q ss_pred HHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 040367 24 FGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRI 103 (400)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (400)
++-..-.|++..++.-...+.. ......-.-+.++++..|++... ....|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 5556668999998884333222 22334445566889999988752 12234444444444433 322
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCC-CCChHh
Q 040367 104 MEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENI-NPDVVT 182 (400)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~ 182 (400)
|+..+++....+ +++..++..+..++...|++++|++++.+.. ..+. .-+...
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i-----------------------~~~~~~~~lea 138 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGI-----------------------DNDEAEGTTEL 138 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----------------------TSSCSTTHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHh-----------------------ccCCCcCcHHH
Confidence 778888887665 5667777788999999999766666665543 3321 135677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHH--Hh--CCChHHHHHHHHHHHHcCCCCCHHhH
Q 040367 183 YTSVIRGFCYANDWNEAKCLLIEMMDQGVQP-----NVVTFNVIMDEL--CK--NGKMDEASRLLDLMIQIGVRPNAFVY 253 (400)
Q Consensus 183 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~--~~--~~~~~~a~~~~~~~~~~~~~~~~~~~ 253 (400)
+...+.++.+.|+.+.|.+.+++|.+. .| +..+...+..++ .. .+++.+|..+|+++.+. .|+..+.
T Consensus 139 ~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~ 214 (310)
T 3mv2_B 139 LLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQ 214 (310)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccH
Confidence 888899999999999999999999875 45 345555666553 22 34899999999998775 3443334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040367 254 NTLMDGFCLTGRVNRAKELFVSMESMG---------CTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKG 315 (400)
Q Consensus 254 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 315 (400)
..++.++.+.|++++|...++.+.+.. -+.++.+...++......|+ +|.++++++.+..
T Consensus 215 ~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 215 LGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 445558999999999999999876531 14467777566666666776 8899999999864
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.29 E-value=1.5e-09 Score=84.78 Aligned_cols=178 Identities=11% Similarity=0.047 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC----ChHHHHHH
Q 040367 162 DKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNG----KMDEASRL 237 (400)
Q Consensus 162 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~ 237 (400)
.+|.+.|++..+.| +...+..+...|...+++++|++.|++..+.| ++..+..+...|.. + ++++|..+
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 34666777777664 77888899999999999999999999999875 66777788888877 6 89999999
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHh----cCCHHHHHHHH
Q 040367 238 LDLMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAKELFVSMESMGCT-HTVFSYSILINGYCK----NKEIEGALSLY 308 (400)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~ 308 (400)
|++..+.+ ++..+..|...|.. .+++++|...|++..+.+.. .++..+..|...|.. .+++++|.++|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998865 66778888888887 88999999999999987521 126788889999988 88999999999
Q ss_pred HHHHhCCCCCchhhHHHHHHHHHhh-C-----cHHHHHHHHHHHHHcCC
Q 040367 309 GEMLSKGIKPDVVIYNTLFVVLFEI-H-----QVERAFKLFDEMQRDGV 351 (400)
Q Consensus 309 ~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~ 351 (400)
++..+. ..+...+..+...|... | ++++|..+|++..+.|.
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999987 22455677777777643 3 89999999999998764
No 99
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.28 E-value=6.5e-10 Score=90.00 Aligned_cols=175 Identities=11% Similarity=0.003 Sum_probs=138.8
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCChh
Q 040367 212 QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPN---AFVYNTLMDGFCLTGRVNRAKELFVSMESMGC--THTVF 286 (400)
Q Consensus 212 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~ 286 (400)
+.+...+......+.+.|++++|...|+++.+.... + ...+..+..+|...|++++|...|+++.+... +....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 346677778888999999999999999999986422 3 56788899999999999999999999998641 12245
Q ss_pred hHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCchhhH-----------------HHHHHHHHhhCcHHHHHH
Q 040367 287 SYSILINGYCK--------NKEIEGALSLYGEMLSKGIKPDVVIY-----------------NTLFVVLFEIHQVERAFK 341 (400)
Q Consensus 287 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~a~~ 341 (400)
.+..+..++.. .|++++|...|+++++..+. +.... ..+...+...|++++|+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 67778888888 99999999999999986422 33333 456788899999999999
Q ss_pred HHHHHHHcCCCC--CHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHHhcccchh
Q 040367 342 LFDEMQRDGVAA--DTWTYRTFIDGLCKN----------SYIVEAVELFRTLRILKCELDI 390 (400)
Q Consensus 342 ~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~ 390 (400)
.|+++++..... ....+..+..+|... |++++|...|+++.+. .|+.
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 228 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS 228 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence 999999863211 345777888888866 9999999999999874 4544
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.27 E-value=1e-10 Score=107.90 Aligned_cols=173 Identities=13% Similarity=-0.064 Sum_probs=143.5
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 040367 191 CYANDWNEAKCLLIEMM--------DQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL 262 (400)
Q Consensus 191 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (400)
...|++++|++.+++.. +. .+.+...+..+..++...|++++|...++++.+.. +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 78899999999999998 43 24566788888889999999999999999999864 3367888889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHH
Q 040367 263 TGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKL 342 (400)
Q Consensus 263 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 342 (400)
.|++++|...|+++.+.. +.+...+..+..++.+.|++++ .+.|+++.+.+.. +...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999886 5578889999999999999999 9999999987533 677888999999999999999999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHhcCc
Q 040367 343 FDEMQRDGVAAD-TWTYRTFIDGLCKNSY 370 (400)
Q Consensus 343 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 370 (400)
|+++.+. .|+ ...+..+..++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9998875 444 6677777777766554
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.26 E-value=1.6e-08 Score=82.60 Aligned_cols=230 Identities=9% Similarity=-0.028 Sum_probs=174.3
Q ss_pred hHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhC---CCh
Q 040367 161 VDKAKELFLQMKDENINPDVVTYTSVIRGFCYAN--DWNEAKCLLIEMMDQGVQPNVVTFNVIMDEL----CKN---GKM 231 (400)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 231 (400)
.++|++..+.++..+ |-+...|+.--.++...| +++++++.++.++..+ +-+..+|+.--..+ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 456777777766654 446677888888888888 9999999999999864 33445555443333 444 789
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC------HHH
Q 040367 232 DEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVN--RAKELFVSMESMGCTHTVFSYSILINGYCKNKE------IEG 303 (400)
Q Consensus 232 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~ 303 (400)
++++.+++++.+.. +-+..+++--.-++.+.|.++ ++++.++++.+.+ +-|...|+.-.......+. +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 99999999999875 347788887777788888888 9999999999887 5688888887777777776 899
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 040367 304 ALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVER-AFKLFDEMQRDG--VAADTWTYRTFIDGLCKNSYIVEAVELFRT 380 (400)
Q Consensus 304 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 380 (400)
+++.+++++...+. |...|+.+...+.+.|+... +..+.+++.+.+ -..+...+..++..|.+.|+.++|+++++.
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 99999999987654 88889888888888887444 445666655432 134788899999999999999999999999
Q ss_pred HHHhcccch-hHHHHHH
Q 040367 381 LRILKCELD-IRAYNCL 396 (400)
Q Consensus 381 ~~~~~~~p~-~~~~~~l 396 (400)
+.+. +.|. ...|+..
T Consensus 284 l~~~-~Dpir~~yW~~~ 299 (306)
T 3dra_A 284 LKSK-YNPIRSNFWDYQ 299 (306)
T ss_dssp HHHT-TCGGGHHHHHHH
T ss_pred HHhc-cChHHHHHHHHH
Confidence 9853 3443 3445443
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.26 E-value=3e-09 Score=83.90 Aligned_cols=186 Identities=10% Similarity=-0.006 Sum_probs=121.2
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--HhHH
Q 040367 179 DVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQ-P-NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNA--FVYN 254 (400)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 254 (400)
+...+..+...+...|++++|+..|+++.+.... + ....+..+..++.+.|++++|...|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445666777888999999999999998875321 1 1356777888999999999999999999886432111 2344
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 040367 255 TLMDGFCL------------------TGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGI 316 (400)
Q Consensus 255 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 316 (400)
.+..++.. .|++++|...|+++.+.. |.+...+......- .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH-----
Confidence 45555544 345566666666655542 22222221111100 000000
Q ss_pred CCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhc
Q 040367 317 KPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAAD----TWTYRTFIDGLCKNSYIVEAVELFRTLRILK 385 (400)
Q Consensus 317 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 385 (400)
......+...+.+.|++++|+..|+++++. .|+ ...+..+..++.+.|++++|.+.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 001134567788899999999999999986 233 2568889999999999999999999888753
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.24 E-value=2.5e-10 Score=105.31 Aligned_cols=171 Identities=11% Similarity=-0.068 Sum_probs=82.2
Q ss_pred HhcCChhhHHHHHHHHH--------hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 040367 63 CKMGRVSHGFVVLGRIL--------RSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYR 134 (400)
Q Consensus 63 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 134 (400)
...|++++|++.++++. +.. +.+...+..+...+...|++++|.+.|++..+.+ +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44455555555555554 221 2234445555555555555555555555555443 3344555555555555
Q ss_pred cCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 040367 135 TGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPN 214 (400)
Q Consensus 135 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 214 (400)
.|++++|+..|+++.+.+ +.+...+..+..++.+.|++++ ++.|++..+.+ +.+
T Consensus 480 ~g~~~~A~~~~~~al~l~------------------------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~ 533 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF------------------------PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGV 533 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS------------------------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTC
T ss_pred cCCHHHHHHHHHHHHHhC------------------------CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-Cch
Confidence 555444444433332211 2234445555555555555555 55555555442 234
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 040367 215 VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL 262 (400)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (400)
...+..+..++.+.|++++|...|+++.+.. +.+...+..+..++..
T Consensus 534 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 534 ISAAFGLARARSAEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHc
Confidence 4455555555555555555555555554432 1123344444444433
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.23 E-value=7.9e-10 Score=91.75 Aligned_cols=187 Identities=11% Similarity=0.006 Sum_probs=110.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC---CC--CHHhHHHH
Q 040367 187 IRGFCYANDWNEAKCLLIEMMDQ----GVQ-PNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGV---RP--NAFVYNTL 256 (400)
Q Consensus 187 ~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l 256 (400)
...|...|++++|...|.+..+. +.. .-..+|..+..+|...|++++|...+++..+... .+ ...++..+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34566677777777777766542 110 0134666677777777788777777777655311 11 13456667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCc-hhhHHHH
Q 040367 257 MDGFCLTGRVNRAKELFVSMESMGCTH-----TVFSYSILINGYCKNKEIEGALSLYGEMLSK----GIKPD-VVIYNTL 326 (400)
Q Consensus 257 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l 326 (400)
..+|.. |++++|+..|++..+..... ...++..+...|...|++++|++.+++..+. +..+. ...+..+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 777777 88888888887765532111 1345667777788888888888888777653 11111 1245555
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHcCCC--CC--HHHHHHHHHHHHhcCcHHHHHH
Q 040367 327 FVVLFEIHQVERAFKLFDEMQRDGVA--AD--TWTYRTFIDGLCKNSYIVEAVE 376 (400)
Q Consensus 327 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~l~~~~~~~g~~~~a~~ 376 (400)
+.++...|++++|...|++.. .... .. ......++.++ ..|+.+.+.+
T Consensus 202 g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 566666788888888888777 3110 11 12334445444 4566655554
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.23 E-value=8.7e-11 Score=86.15 Aligned_cols=81 Identities=12% Similarity=0.069 Sum_probs=33.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 040367 220 VIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNK 299 (400)
Q Consensus 220 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 299 (400)
.+...|.+.|++++|.+.|+++++.. +.+..++..+..+|...|++++|...|++..+.+ +.+...+..+...|.+.|
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKND 113 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 33444444444444444444444432 1133344444444444444444444444444432 223334444444444444
Q ss_pred CHH
Q 040367 300 EIE 302 (400)
Q Consensus 300 ~~~ 302 (400)
+++
T Consensus 114 ~~~ 116 (150)
T 4ga2_A 114 VTD 116 (150)
T ss_dssp SSS
T ss_pred ChH
Confidence 443
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.22 E-value=3e-08 Score=81.01 Aligned_cols=225 Identities=8% Similarity=-0.022 Sum_probs=157.9
Q ss_pred hccCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChhhHHHHHHHHHhcCCCCChhhHHHHHHHH----Hhc
Q 040367 28 AKNKH-YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG--RVSHGFVVLGRILRSCFTPNAVTFTSLIKGL----CAE 100 (400)
Q Consensus 28 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 100 (400)
.+.|. .++|+.+++.+...+ +-+..+|+.-..++...| +++++++.++.++..++ -+..+|+.-...+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhc
Confidence 34444 468999999999875 446777888888888888 99999999999998763 3667777666555 455
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCC
Q 040367 101 ---SRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENIN 177 (400)
Q Consensus 101 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 177 (400)
+++++++.+++++.+.. +.+..+|+.-.-.+.+.|.++ .+++++.++++.+.+ +
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~---------------------~~~EL~~~~~~i~~d-~ 177 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHN---------------------DAKELSFVDKVIDTD-L 177 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTT---------------------CHHHHHHHHHHHHHC-T
T ss_pred cccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccC---------------------hHHHHHHHHHHHHhC-C
Confidence 78999999999999886 668888888888888888755 113444444444443 4
Q ss_pred CChHhHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH-HHHHHHHHHHcC--CCC
Q 040367 178 PDVVTYTSVIRGFCYAND------WNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDE-ASRLLDLMIQIG--VRP 248 (400)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~ 248 (400)
-|...|+.-..+....+. ++++++.+++++... +-|...|+..-..+.+.|+... +..+..++.+.+ -..
T Consensus 178 ~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (306)
T 3dra_A 178 KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVT 256 (306)
T ss_dssp TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEES
T ss_pred CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCC
Confidence 466777766666666665 778888888877764 5577777777777777666433 444555544322 123
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 249 NAFVYNTLMDGFCLTGRVNRAKELFVSMES 278 (400)
Q Consensus 249 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 278 (400)
++..+..++.+|.+.|+.++|.++++.+.+
T Consensus 257 s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 257 SSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 556666677777777777777777777765
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.22 E-value=5.9e-09 Score=82.23 Aligned_cols=174 Identities=9% Similarity=-0.042 Sum_probs=116.8
Q ss_pred cccchHHHHHHHHHHHhCCCC-C-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHh-----
Q 040367 157 VEGFVDKAKELFLQMKDENIN-P-DVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQ-PN-VVTFNVIMDELCK----- 227 (400)
Q Consensus 157 ~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~----- 227 (400)
..|++++|+..|+++.+.... + ....+..+..++.+.|++++|+..|+++.+.... +. ...+..+..++..
T Consensus 16 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~ 95 (225)
T 2yhc_A 16 QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSA 95 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhh
Confidence 368899999999999875321 1 1357788899999999999999999999876422 11 1245555555543
Q ss_pred -------------CCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 040367 228 -------------NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILING 294 (400)
Q Consensus 228 -------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (400)
.|++++|...|+++++... -+.......... ..+...+. .....+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P-~~~~a~~a~~~l----------~~~~~~~~--------~~~~~~a~~ 156 (225)
T 2yhc_A 96 LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP-NSQYTTDATKRL----------VFLKDRLA--------KYEYSVAEY 156 (225)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCT-TCTTHHHHHHHH----------HHHHHHHH--------HHHHHHHHH
T ss_pred hhhhhccchhhcCcHHHHHHHHHHHHHHHHCc-CChhHHHHHHHH----------HHHHHHHH--------HHHHHHHHH
Confidence 5789999999999998632 222222211110 00111111 112345677
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCc--hhhHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 295 YCKNKEIEGALSLYGEMLSKGIKPD--VVIYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
|.+.|++++|...|+++++..+... ...+..+..++.+.|++++|.+.++.+...
T Consensus 157 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 157 YTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 8888899999999988887632211 245777888888899999999998888775
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.21 E-value=3.5e-10 Score=85.53 Aligned_cols=167 Identities=11% Similarity=-0.029 Sum_probs=125.2
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIK 95 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (400)
+...+......+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..++++.... |+...+..+..
T Consensus 5 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~ 81 (176)
T 2r5s_A 5 PDEQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAK 81 (176)
T ss_dssp -CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHH
Confidence 34567778889999999999999999987764 4578899999999999999999999999988764 34444333222
Q ss_pred H-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhC
Q 040367 96 G-LCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDE 174 (400)
Q Consensus 96 ~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 174 (400)
. +...+...+|...+++..+.. +.+...+..+...+...|++++|...|+++....+.
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------------------- 140 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLG-------------------- 140 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT--------------------
T ss_pred HHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc--------------------
Confidence 2 222233345788899888774 457899999999999999976666666665443211
Q ss_pred CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 175 NINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMD 208 (400)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 208 (400)
..+...+..+..++...|+.++|...|++.+.
T Consensus 141 --~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 141 --AQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp --TTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred --cChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 12356788899999999999999999987654
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.21 E-value=2.9e-10 Score=85.97 Aligned_cols=161 Identities=12% Similarity=0.009 Sum_probs=78.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH-HH
Q 040367 183 YTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDG-FC 261 (400)
Q Consensus 183 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 261 (400)
+......+...|++++|+..+++..+.. +.+...+..+..++...|++++|...++++.... |+......+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3444555666666666666666655432 3345555666666666666666666666655432 132222211111 11
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-chhhHHHHHHHHHhhCcHHHHH
Q 040367 262 LTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKP-DVVIYNTLFVVLFEIHQVERAF 340 (400)
Q Consensus 262 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 340 (400)
..++...|...+++..+.. +.+...+..+...+...|++++|...++++.+..+.+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1112223445555554443 3344455555555555555555555555555443221 1334445555555555555555
Q ss_pred HHHHHHH
Q 040367 341 KLFDEMQ 347 (400)
Q Consensus 341 ~~~~~~~ 347 (400)
..|++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.20 E-value=1.1e-10 Score=85.64 Aligned_cols=143 Identities=8% Similarity=-0.051 Sum_probs=91.6
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 040367 224 ELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEG 303 (400)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 303 (400)
.+...|++++|+..+....... +.+...+..+...|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 4445566777777777665431 1123445566777777777777777777777765 4567777777777777777777
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcCc
Q 040367 304 ALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKL-FDEMQRDGVAADTWTYRTFIDGLCKNSY 370 (400)
Q Consensus 304 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 370 (400)
|...|+++++..+. +...+..+...+.+.|++++|.+. ++++.+.. +-++.+|......+...|+
T Consensus 84 A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 77777777775422 566677777777777777655543 46666642 2345666655555555553
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.20 E-value=9.3e-10 Score=90.28 Aligned_cols=161 Identities=10% Similarity=0.002 Sum_probs=67.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHH-HHHHH
Q 040367 181 VTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYN-TLMDG 259 (400)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~ 259 (400)
..+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|...++++.... |+..... .....
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHH
Confidence 334444444445555555555555544432 2234444444444445555555555554443321 2221111 11112
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-chhhHHHHHHHHHhhCcHHH
Q 040367 260 FCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKP-DVVIYNTLFVVLFEIHQVER 338 (400)
Q Consensus 260 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 338 (400)
+...++.+.|...+++..... +.+...+..+...+...|++++|...++++.+..... +...+..++..+...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 333344444444444444433 3334444444444444444444444444444432111 12334444444444444444
Q ss_pred HHHHHHH
Q 040367 339 AFKLFDE 345 (400)
Q Consensus 339 a~~~~~~ 345 (400)
|...+++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.18 E-value=1.4e-09 Score=98.61 Aligned_cols=154 Identities=10% Similarity=-0.024 Sum_probs=115.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 040367 193 ANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKEL 272 (400)
Q Consensus 193 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 272 (400)
.|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988763 4467888888899999999999999999998864 33677888899999999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhh---CcHHHHHHHHHHHHHc
Q 040367 273 FVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEI---HQVERAFKLFDEMQRD 349 (400)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 349 (400)
+++..+.. +.+...+..+..++...|++++|.+.++++.+... .+...+..+..++... |++++|.+.++++.+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998875 55678888999999999999999999999888643 3567788888888888 9999999999998886
Q ss_pred C
Q 040367 350 G 350 (400)
Q Consensus 350 ~ 350 (400)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.18 E-value=1.5e-09 Score=89.13 Aligned_cols=168 Identities=14% Similarity=0.079 Sum_probs=137.6
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH-H
Q 040367 212 QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYS-I 290 (400)
Q Consensus 212 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ 290 (400)
+.+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 4456677788888999999999999999999874 3367788899999999999999999999998764 4443332 3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcC
Q 040367 291 LINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVA-ADTWTYRTFIDGLCKNS 369 (400)
Q Consensus 291 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 369 (400)
....+...++.++|.+.+++..+..+ .+...+..+...+...|++++|+..++++.+.... .+...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 33346677888899999999988753 36788899999999999999999999999986322 12678899999999999
Q ss_pred cHHHHHHHHHHHHH
Q 040367 370 YIVEAVELFRTLRI 383 (400)
Q Consensus 370 ~~~~a~~~~~~~~~ 383 (400)
+.++|...+++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999988764
No 114
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.17 E-value=1.5e-07 Score=83.10 Aligned_cols=321 Identities=10% Similarity=0.002 Sum_probs=199.1
Q ss_pred ccC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-HHHH
Q 040367 29 KNK-HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESR-IMEA 106 (400)
Q Consensus 29 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a 106 (400)
+.| +++.|..+|+.+... -|. |+++.+..+|++.+.. .|+...|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 488888888888765 233 7899999999999985 5799999999988777764 4557
Q ss_pred HHHHHHHHHc-CC-CCCHHHHHHHHHHHH----hcCChHHHHHHHHHHHcCCCCCCcc----------------------
Q 040367 107 AALFTKLRVF-GC-EPNVFTYNTLINGLY----RTGHTIVALNLFEEMASGNGEFGVE---------------------- 158 (400)
Q Consensus 107 ~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~---------------------- 158 (400)
..+|+..... |. +.+...|...+..+. ..++.+.+..+|++.+.... ....
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~-~~~~~lw~~Y~~fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPM-GSLSELWKDFENFELELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCC-TTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChh-hhHHHHHHHHHHHHHHhccccHHHHH
Confidence 7788877764 43 347788888887654 34678889999999987422 1110
Q ss_pred ----cchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC--C-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040367 159 ----GFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYAN--D-----WNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK 227 (400)
Q Consensus 159 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 227 (400)
+.+..|..+++.+...-...+...|...+..-...+ - .+.+..+|++++.. .+.+...|...+..+.+
T Consensus 147 ~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~ 225 (493)
T 2uy1_A 147 GDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIG 225 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence 011112222222221100012335555554432221 1 34567788888875 35668888888888889
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC------------CCCChhhHHHHHHHH
Q 040367 228 NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG------------CTHTVFSYSILINGY 295 (400)
Q Consensus 228 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~ 295 (400)
.|+.+.|..++++.... +.+...+. .|....+.++. ++.+.+.- .......|...+...
T Consensus 226 ~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~ 296 (493)
T 2uy1_A 226 IGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYV 296 (493)
T ss_dssp TTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHH
Confidence 99999999999999987 33332222 22222111121 22222210 011124566677777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhC-cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHH
Q 040367 296 CKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIH-QVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEA 374 (400)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 374 (400)
.+.++.+.|..+|+++ +. ...+...|...+..-...+ +.+.|..+|+...+. .+.+...+...++...+.|+.+.|
T Consensus 297 ~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~a 373 (493)
T 2uy1_A 297 LKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENA 373 (493)
T ss_dssp HHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 7788899999999999 32 1224444443332222334 699999999999886 333456677778877889999999
Q ss_pred HHHHHHH
Q 040367 375 VELFRTL 381 (400)
Q Consensus 375 ~~~~~~~ 381 (400)
..+|+++
T Consensus 374 R~l~er~ 380 (493)
T 2uy1_A 374 RALFKRL 380 (493)
T ss_dssp HHHHHHS
T ss_pred HHHHHHH
Confidence 9888876
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.14 E-value=2.8e-09 Score=96.61 Aligned_cols=154 Identities=8% Similarity=-0.006 Sum_probs=121.3
Q ss_pred cchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 040367 159 GFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLL 238 (400)
Q Consensus 159 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 238 (400)
|++++|.+.+++..+.. +.+...+..+...+...|++++|++.+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34666777777666553 4467889999999999999999999999999874 456888999999999999999999999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCC
Q 040367 239 DLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKN---KEIEGALSLYGEMLSKG 315 (400)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 315 (400)
++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+...+... |++++|.+.++++.+.+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9999874 3467888999999999999999999999999876 55778899999999999 99999999999998875
Q ss_pred C
Q 040367 316 I 316 (400)
Q Consensus 316 ~ 316 (400)
.
T Consensus 159 p 159 (568)
T 2vsy_A 159 V 159 (568)
T ss_dssp C
T ss_pred C
Confidence 3
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.13 E-value=4.6e-08 Score=80.52 Aligned_cols=207 Identities=11% Similarity=0.071 Sum_probs=142.3
Q ss_pred HHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 040367 168 FLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVV---TFNVIMDELCKNGKMDEASRLLDLMIQI 244 (400)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 244 (400)
+.++......|+..+...+...+...-+ .+.......+.. .+...+..+...|++++|..++++..+.
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 3334333346777776666665532211 111111122232 2333466788899999999999999875
Q ss_pred CC-CCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040367 245 GV-RPNA----FVYNTLMDGFCLTGRVNRAKELFVSMESMGCT-HT----VFSYSILINGYCKNKEIEGALSLYGEMLSK 314 (400)
Q Consensus 245 ~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 314 (400)
.. .|+. ..+..+...+...+++++|...++++.+.... ++ ..+++.+...|...|++++|...++++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 32 2221 13335677777888999999999999874322 22 236889999999999999999999998841
Q ss_pred -----CCCC-chhhHHHHHHHHHhhCcHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCc-HHHHHHHHHHHH
Q 040367 315 -----GIKP-DVVIYNTLFVVLFEIHQVERAFKLFDEMQRD----GVAAD-TWTYRTFIDGLCKNSY-IVEAVELFRTLR 382 (400)
Q Consensus 315 -----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~-~~~a~~~~~~~~ 382 (400)
+..+ ...++..+...|...|++++|...++++++. +..+. ..+|..+..++.+.|+ +++|.+.+++..
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1112 2347788899999999999999999988753 22222 6788999999999994 699999999886
Q ss_pred H
Q 040367 383 I 383 (400)
Q Consensus 383 ~ 383 (400)
.
T Consensus 265 ~ 265 (293)
T 3u3w_A 265 F 265 (293)
T ss_dssp H
T ss_pred H
Confidence 4
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.13 E-value=1.8e-09 Score=89.54 Aligned_cols=198 Identities=9% Similarity=-0.037 Sum_probs=143.9
Q ss_pred cchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 040367 159 GFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLL 238 (400)
Q Consensus 159 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 238 (400)
|++++|.+++++..+.. +.. .+...++++.|...|.++ ...|...|++++|...+
T Consensus 5 ~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 44666666666665431 111 011157888888888765 34677899999999999
Q ss_pred HHHHHcCC---CC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CC--ChhhHHHHHHHHHhcCCHHHHHHHH
Q 040367 239 DLMIQIGV---RP--NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGC---TH--TVFSYSILINGYCKNKEIEGALSLY 308 (400)
Q Consensus 239 ~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~ 308 (400)
.+..+... .+ -..++..+..+|...|++++|...|++..+... .+ ...++..+...|.. |++++|++.+
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 98876411 11 145788888999999999999999998765311 11 13567888889988 9999999999
Q ss_pred HHHHhCCCC---C--chhhHHHHHHHHHhhCcHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCcHHHHHHHH
Q 040367 309 GEMLSKGIK---P--DVVIYNTLFVVLFEIHQVERAFKLFDEMQRD----GVAAD-TWTYRTFIDGLCKNSYIVEAVELF 378 (400)
Q Consensus 309 ~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~ 378 (400)
++.++.... + ...++..+...+...|++++|+..|+++.+. +..+. ...+..+..++...|++++|...|
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 988764111 1 1457788899999999999999999998864 11111 235667777888889999999999
Q ss_pred HHHH
Q 040367 379 RTLR 382 (400)
Q Consensus 379 ~~~~ 382 (400)
++..
T Consensus 219 ~~al 222 (307)
T 2ifu_A 219 RESY 222 (307)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9998
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.04 E-value=1.9e-08 Score=78.52 Aligned_cols=128 Identities=9% Similarity=0.004 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 040367 216 VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGY 295 (400)
Q Consensus 216 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (400)
..+..+...+...|++++|...++++. .|+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345566677888899999998888763 5577888888888888999999999998888775 55677888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCch----------------hhHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 296 CKNKEIEGALSLYGEMLSKGIKPDV----------------VIYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
...|++++|.+.++++.+.... +. ..+..+..++...|++++|...|+++.+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 8999999999999888876422 22 56777888888888888888888888875
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.04 E-value=1.6e-07 Score=77.22 Aligned_cols=164 Identities=9% Similarity=0.061 Sum_probs=120.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHH----HHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CC----HHhHH
Q 040367 185 SVIRGFCYANDWNEAKCLLIEMMDQGV-QPNVV----TFNVIMDELCKNGKMDEASRLLDLMIQIGVR-PN----AFVYN 254 (400)
Q Consensus 185 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 254 (400)
..+..+...|++++|...+++..+... .|+.. .+..+...+...|++++|...++++.+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678889999999999999887431 22211 2334666677778999999999999874222 22 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-chhhH
Q 040367 255 TLMDGFCLTGRVNRAKELFVSMESM-----GCTH-TVFSYSILINGYCKNKEIEGALSLYGEMLSK----GIKP-DVVIY 323 (400)
Q Consensus 255 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~ 323 (400)
.+..+|...|++++|...|+++.+. +..+ ...++..+...|...|++++|.+.+++.++. +..+ -..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8999999999999999999988741 1111 2346788899999999999999999888753 2111 25678
Q ss_pred HHHHHHHHhhC-cHHHHHHHHHHHHH
Q 040367 324 NTLFVVLFEIH-QVERAFKLFDEMQR 348 (400)
Q Consensus 324 ~~l~~~~~~~~-~~~~a~~~~~~~~~ 348 (400)
..+..++...| .+++|.+.++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88889999999 46999999988764
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.04 E-value=5e-09 Score=74.06 Aligned_cols=111 Identities=10% Similarity=-0.006 Sum_probs=84.9
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIK 95 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (400)
....+......+.+.|++++|++.|++..+.. +.+..+|..+..++...|++++|+..+++.++.+ +.+...|..+..
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 89 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence 45667778888888888888888888887764 4567788888888888888888888888888765 346777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 040367 96 GLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLI 129 (400)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 129 (400)
++...|++++|.+.|++..+.. |-+...+..+.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~ 122 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVD-PSNEEAREGVR 122 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence 8888888888888888888764 33555555443
No 121
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.03 E-value=2.5e-09 Score=77.92 Aligned_cols=101 Identities=14% Similarity=0.049 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 040367 52 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLING 131 (400)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (400)
...+..+...+.+.|++++|...|+++.... +.+...|..+..++...|++++|+..|++..+.. |.+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3455555566666666666666666666553 2345556666666666666666666666666553 3345566666666
Q ss_pred HHhcCChHHHHHHHHHHHcCCCC
Q 040367 132 LYRTGHTIVALNLFEEMASGNGE 154 (400)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~~~~ 154 (400)
+.+.|++++|+..|++.....+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Confidence 66666666666666666555443
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.03 E-value=6.6e-08 Score=75.42 Aligned_cols=129 Identities=14% Similarity=-0.058 Sum_probs=110.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 040367 182 TYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFC 261 (400)
Q Consensus 182 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (400)
.+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45567778889999999999998874 5678899999999999999999999999998874 446788889999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 040367 262 LTGRVNRAKELFVSMESMGCTHTV----------------FSYSILINGYCKNKEIEGALSLYGEMLSKGI 316 (400)
Q Consensus 262 ~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 316 (400)
..|++++|...|++..+.. +.+. ..+..+..++...|++++|.+.++++.+...
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 9999999999999998864 2233 6788899999999999999999999998643
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.02 E-value=3.1e-08 Score=73.81 Aligned_cols=128 Identities=10% Similarity=0.043 Sum_probs=79.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHH
Q 040367 252 VYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLF 331 (400)
Q Consensus 252 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 331 (400)
.+..+...+...|++++|...|.+..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34455566666667777777766666554 3456666666666777777777777777666653 224556666666777
Q ss_pred hhCcHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCcHHHHHHHHHHHH
Q 040367 332 EIHQVERAFKLFDEMQRDGVAADTWTYRT--FIDGLCKNSYIVEAVELFRTLR 382 (400)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~ 382 (400)
..|++++|...++++.+.. +.+...+.. .+..+.+.|++++|++.++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777766652 223444433 3333566677777777776654
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.02 E-value=1.1e-07 Score=78.33 Aligned_cols=167 Identities=12% Similarity=0.020 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-----HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CC--h
Q 040367 216 VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNA-----FVYNTLMDGFCLTGRVNRAKELFVSMESMGCT---HT--V 285 (400)
Q Consensus 216 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~ 285 (400)
..+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+.+..+.... +. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555677888899999999999888775322111 22344666777889999999999988753211 11 3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh---CCC-CC--chhhHHHHHHHHHhhCcHHHHHHHHHHHHHcC----CCC-C
Q 040367 286 FSYSILINGYCKNKEIEGALSLYGEMLS---KGI-KP--DVVIYNTLFVVLFEIHQVERAFKLFDEMQRDG----VAA-D 354 (400)
Q Consensus 286 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 354 (400)
.+++.+...|...|++++|...++++.+ ... .+ ...++..+..+|...|++++|...+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4788899999999999999999998873 211 11 12578888999999999999999999887531 111 1
Q ss_pred HHHHHHHHHHHHhcCcHHHH-HHHHHHHH
Q 040367 355 TWTYRTFIDGLCKNSYIVEA-VELFRTLR 382 (400)
Q Consensus 355 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 382 (400)
..+|..+..+|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 67788899999999999999 77787765
No 125
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.00 E-value=4.9e-09 Score=85.67 Aligned_cols=194 Identities=10% Similarity=0.011 Sum_probs=135.3
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 040367 179 DVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMD 258 (400)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 258 (400)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++++.+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 55678888899999999999999999998864 4478889999999999999999999999998864 346788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHH
Q 040367 259 GFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVER 338 (400)
Q Consensus 259 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 338 (400)
++...|++++|...|++..+.+ +.+...+...+....+ ..++.. +........+.+......+... ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 9999999999999999987653 1121122222222221 111122 2223333344455544444333 3799999
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHHhc-CcHHHHHHHHHHHHH
Q 040367 339 AFKLFDEMQRDGVAADT-WTYRTFIDGLCKN-SYIVEAVELFRTLRI 383 (400)
Q Consensus 339 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 383 (400)
|++.++++.+. .|+. .....+...+.+. +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999888765 4443 3334444444444 678889999988764
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.00 E-value=2.7e-08 Score=70.19 Aligned_cols=91 Identities=13% Similarity=0.086 Sum_probs=35.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCc
Q 040367 256 LMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQ 335 (400)
Q Consensus 256 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 335 (400)
....|.+.|++++|+..|++..+.. +.+...|..+..++...|++++|++.+++.++.+.. +...|..+..++...|+
T Consensus 19 ~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 96 (126)
T 4gco_A 19 KGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVAMRE 96 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHCCC
Confidence 3333444444444444444433332 223333334444444444444444444443333211 23333333344444444
Q ss_pred HHHHHHHHHHHHH
Q 040367 336 VERAFKLFDEMQR 348 (400)
Q Consensus 336 ~~~a~~~~~~~~~ 348 (400)
+++|.+.|+++++
T Consensus 97 ~~~A~~~~~~al~ 109 (126)
T 4gco_A 97 WSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 127
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.98 E-value=6e-07 Score=74.23 Aligned_cols=223 Identities=11% Similarity=-0.009 Sum_probs=161.0
Q ss_pred hHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-C-ChHHHHHH
Q 040367 161 VDKAKELFLQMKDENINPDVVTYTSVIRGFCYAN-DWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKN-G-KMDEASRL 237 (400)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~ 237 (400)
.++|+++++++...+ +-+..+|+.--.++...| .++++++.++.++... +-+..+|+.-..++.+. + ++++++++
T Consensus 70 se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 456677777776654 446677887777777788 5999999999999875 45677777766666665 6 88999999
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-------HH
Q 040367 238 LDLMIQIGVRPNAFVYNTLMDGFCLTGRVN--------RAKELFVSMESMGCTHTVFSYSILINGYCKNKE-------IE 302 (400)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~ 302 (400)
++++.+.. +-+..+++--.-+..+.|.++ ++++.++++.+.+ +-|...|+.....+.+.+. ++
T Consensus 148 ~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 148 IHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHH
Confidence 99998864 336777776666666666665 8999999998876 6688889888888887776 78
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcH--------------------HHHHHHHHHHHHcC-----CCCCHHH
Q 040367 303 GALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQV--------------------ERAFKLFDEMQRDG-----VAADTWT 357 (400)
Q Consensus 303 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~~~~~~~ 357 (400)
++++.+++++...+. |...|+.+-..+.+.|.. ....+...++...+ -.++...
T Consensus 226 eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 226 DELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 899999999887544 777887776666665543 22333333332221 1357888
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhcccch
Q 040367 358 YRTFIDGLCKNSYIVEAVELFRTLRILKCELD 389 (400)
Q Consensus 358 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 389 (400)
+..+++.|...|+.++|.++++.+.+. ..|-
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpi 335 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLSSE-YDQM 335 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh-hChH
Confidence 899999999999999999999998743 3443
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.98 E-value=1.5e-08 Score=76.57 Aligned_cols=125 Identities=12% Similarity=0.143 Sum_probs=101.5
Q ss_pred HhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCCH--
Q 040367 27 LAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKG-LCAESRI-- 103 (400)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 103 (400)
+...|++++|+..++...+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 466889999999999988764 4578899999999999999999999999998875 3467778888888 7789998
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCC
Q 040367 104 MEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGE 154 (400)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 154 (400)
++|...+++..+.. +.+...+..+...+...|++++|...++++....+.
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 99999999998875 556888999999999999988888888887766544
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.98 E-value=1.8e-09 Score=78.72 Aligned_cols=94 Identities=16% Similarity=0.101 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHh
Q 040367 253 YNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFE 332 (400)
Q Consensus 253 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 332 (400)
+..+...+.+.|++++|...|+++...+ |.+...|..+..+|...|++++|++.|+++.+..+. +...|..+..++..
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHH
Confidence 3344444444455555555554444443 334444444444444445555555544444443221 33444444444444
Q ss_pred hCcHHHHHHHHHHHHH
Q 040367 333 IHQVERAFKLFDEMQR 348 (400)
Q Consensus 333 ~~~~~~a~~~~~~~~~ 348 (400)
.|++++|...|+++.+
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4455555444444444
No 130
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.97 E-value=1.4e-08 Score=78.54 Aligned_cols=120 Identities=13% Similarity=0.034 Sum_probs=51.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCC-CCHHhHHHHHHHHHhcCCH
Q 040367 192 YANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI----GVR-PNAFVYNTLMDGFCLTGRV 266 (400)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~ 266 (400)
..|++++|.+.++.+... .......+..+...+...|++++|...+++..+. +.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 455566666544333321 1123445555555555555666555555555441 101 1123344444455555555
Q ss_pred HHHHHHHHHHHhc---CC-C--CChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040367 267 NRAKELFVSMESM---GC-T--HTVFSYSILINGYCKNKEIEGALSLYGEML 312 (400)
Q Consensus 267 ~~a~~~~~~~~~~---~~-~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 312 (400)
++|...+++..+. .. . .....+..+...+...|++++|...+++..
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5555555444332 00 0 012223444444444455555544444443
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.96 E-value=2.5e-08 Score=71.18 Aligned_cols=120 Identities=9% Similarity=0.004 Sum_probs=100.7
Q ss_pred CCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 040367 14 PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSL 93 (400)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (400)
|.+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 3567789999999999999999999999998874 4478889999999999999999999999998874 3467888889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 040367 94 IKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTG 136 (400)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 136 (400)
..++...|++++|.+.+++..+.. +.+...+..+..++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 999999999999999999998774 345666777777766554
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.96 E-value=4.4e-08 Score=68.86 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=95.6
Q ss_pred hhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 040367 17 VCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKG 96 (400)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (400)
...|..+...+...|++++|+..|+++.... +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 6678888899999999999999999998764 4577888899999999999999999999998764 4467788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 040367 97 LCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRT 135 (400)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 135 (400)
+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 999999999999999988774 44566666666655443
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.96 E-value=8.7e-08 Score=71.30 Aligned_cols=127 Identities=13% Similarity=0.056 Sum_probs=69.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 040367 218 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCK 297 (400)
Q Consensus 218 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 297 (400)
+..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 4444445555555555555555555542 2244555555556666666666666666665543 3345556666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCchhhHHH--HHHHHHhhCcHHHHHHHHHHHH
Q 040367 298 NKEIEGALSLYGEMLSKGIKPDVVIYNT--LFVVLFEIHQVERAFKLFDEMQ 347 (400)
Q Consensus 298 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~ 347 (400)
.|++++|.+.++++.+.... +...+.. .+..+...|++++|...++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 66666666666666654322 3333322 2223555666666666665543
No 134
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.96 E-value=3.7e-09 Score=86.37 Aligned_cols=100 Identities=14% Similarity=0.046 Sum_probs=69.7
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 040367 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLI 94 (400)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (400)
.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 355667777777777777777777777776653 3366677777777777777777777777777653 33556666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 040367 95 KGLCAESRIMEAAALFTKLRVF 116 (400)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~ 116 (400)
.++...|++++|...|++..+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777776654
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.94 E-value=5.5e-09 Score=76.20 Aligned_cols=99 Identities=11% Similarity=-0.072 Sum_probs=66.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 040367 249 NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFV 328 (400)
Q Consensus 249 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 328 (400)
+...+..+...+...|++++|...|+.+.... +.+...|..+..++...|++++|.+.++++++... .+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence 34455556666777777777777777776664 44666666777777777777777777777766532 24556666677
Q ss_pred HHHhhCcHHHHHHHHHHHHHc
Q 040367 329 VLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 329 ~~~~~~~~~~a~~~~~~~~~~ 349 (400)
++...|++++|...|+++.+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777776654
No 136
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.94 E-value=2.5e-06 Score=70.54 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=28.4
Q ss_pred CchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 040367 318 PDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTF 361 (400)
Q Consensus 318 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 361 (400)
++...+..++..|...|+.++|.++++.+.+.--+.....|+..
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~ 343 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFR 343 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 45666777777888888888888888887654223334444433
No 137
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.93 E-value=1.6e-08 Score=73.76 Aligned_cols=109 Identities=11% Similarity=0.003 Sum_probs=72.1
Q ss_pred hHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 040367 4 FDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCF 83 (400)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 83 (400)
|+.++...|. +...+..+...+.+.|++++|+..|+...... +.+...|..+..++...|++++|+..|+++....
T Consensus 10 ~~~al~~~p~--~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 10 IAMLNEISSD--TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp HHHHTTCCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHcCCHh--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 4455554443 55666666777777777777777777776653 3466666777777777777777777777776654
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 040367 84 TPNAVTFTSLIKGLCAESRIMEAAALFTKLRVF 116 (400)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (400)
+.+...+..+..++...|++++|...|++..+.
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 235566666677777777777777777776654
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.93 E-value=2.7e-08 Score=70.69 Aligned_cols=121 Identities=9% Similarity=0.053 Sum_probs=103.7
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 040367 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLI 94 (400)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (400)
.+...+..+...+...|++++|+..|++..... +.+...+..+..++...|++++|.+.++...+.. +.+...+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 356678888999999999999999999998764 4578889999999999999999999999998874 34677888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 040367 95 KGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHT 138 (400)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (400)
.++...|++++|...+++..+.. +.+...+..+..++.+.|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999998875 45778888888888877763
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.92 E-value=9.6e-09 Score=77.63 Aligned_cols=122 Identities=10% Similarity=0.085 Sum_probs=90.3
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCCH--
Q 040367 225 LCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILING-YCKNKEI-- 301 (400)
Q Consensus 225 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 301 (400)
+...|++++|...+++..+.. +.+...+..+..+|...|++++|...|+++.+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 345677888888888887763 3466778888888888888888888888887765 4466777777777 7778887
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 302 EGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 302 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
++|...++++.+... .+...+..+...+...|++++|...++++.+.
T Consensus 98 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888888887643 25667777888888888888888888888875
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.92 E-value=7.8e-08 Score=76.79 Aligned_cols=197 Identities=10% Similarity=-0.074 Sum_probs=129.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhCCChHHHHHHHHHHHHcCCCCC---------------
Q 040367 192 YANDWNEAKCLLIEMMDQGVQPNVVTFNVI-------MDELCKNGKMDEASRLLDLMIQIGVRPN--------------- 249 (400)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 249 (400)
..++...|.+.|.++.... +-....|..+ ...+...++..+++..+....+. .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 5788888888888888764 3455666665 34444444444444444444331 111
Q ss_pred -------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--h
Q 040367 250 -------AFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPD--V 320 (400)
Q Consensus 250 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 320 (400)
......+..++...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1233445667778888888888888887653 333255566667888888888888887555431 121 2
Q ss_pred hhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchhHHHHHH
Q 040367 321 VIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAAD--TWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDIRAYNCL 396 (400)
Q Consensus 321 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 396 (400)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++... .|+...+..|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 3566778888888999999998888875432243 345667777888889999999999888874 4554444444
No 141
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.91 E-value=1e-07 Score=66.93 Aligned_cols=95 Identities=14% Similarity=0.244 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHH
Q 040367 252 VYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLF 331 (400)
Q Consensus 252 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 331 (400)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 33344444444444444444444444432 2233444444444444455555555544444432 113334444444444
Q ss_pred hhCcHHHHHHHHHHHHH
Q 040367 332 EIHQVERAFKLFDEMQR 348 (400)
Q Consensus 332 ~~~~~~~a~~~~~~~~~ 348 (400)
..|++++|...++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 55555555555554444
No 142
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.91 E-value=3.6e-07 Score=75.14 Aligned_cols=168 Identities=8% Similarity=0.023 Sum_probs=126.7
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC---CC-
Q 040367 180 VVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNV------VTFNVIMDELCKNGKMDEASRLLDLMIQIGVR---PN- 249 (400)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~- 249 (400)
...+...+..+...|++++|.+.+++..+.... .. ..+..+...+...|++++|...+++..+.... +.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 345556777889999999999999988875322 22 22344556677889999999999999864211 11
Q ss_pred -HHhHHHHHHHHHhcCCHHHHHHHHHHHHh---cCC-CC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CC-
Q 040367 250 -AFVYNTLMDGFCLTGRVNRAKELFVSMES---MGC-TH--TVFSYSILINGYCKNKEIEGALSLYGEMLSKG----IK- 317 (400)
Q Consensus 250 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~- 317 (400)
..+++.+...|...|++++|...++++.+ ... .+ ...++..+...|...|++++|.+.+++..+.. ..
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 45788899999999999999999999873 211 11 12578899999999999999999999887641 11
Q ss_pred CchhhHHHHHHHHHhhCcHHHH-HHHHHHHHH
Q 040367 318 PDVVIYNTLFVVLFEIHQVERA-FKLFDEMQR 348 (400)
Q Consensus 318 ~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 348 (400)
.-..+|..+..++...|++++| ...++++..
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1156788899999999999999 777887664
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.90 E-value=1.9e-08 Score=84.46 Aligned_cols=131 Identities=17% Similarity=0.072 Sum_probs=112.3
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD--------------LYTYNILINCFCKMGRVSHGFVVLGRILRS 81 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (400)
+...|..+...+.+.|++++|+..|++..+...... ..+|..+..++.+.|++++|+..++++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567888999999999999999999999988742211 588999999999999999999999999987
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHH
Q 040367 82 CFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVA-LNLFEEM 148 (400)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~ 148 (400)
. +.+...+..+..+|...|++++|...|++..+.. +.+..++..+..++.+.|+.++| ...++.+
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 4478889999999999999999999999999875 55788899999999999998887 3455554
No 144
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.90 E-value=6.3e-08 Score=68.99 Aligned_cols=94 Identities=14% Similarity=0.068 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHh
Q 040367 253 YNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFE 332 (400)
Q Consensus 253 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 332 (400)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+..++..
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHH
Confidence 3333444444444444444444443332 22333344444444444444444444444443321 123333444444444
Q ss_pred hCcHHHHHHHHHHHHH
Q 040367 333 IHQVERAFKLFDEMQR 348 (400)
Q Consensus 333 ~~~~~~a~~~~~~~~~ 348 (400)
.|++++|.+.++++.+
T Consensus 97 ~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 97 MKDYTKAMDVYQKALD 112 (133)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHH
Confidence 4444444444444443
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.89 E-value=8.1e-08 Score=68.13 Aligned_cols=117 Identities=9% Similarity=-0.012 Sum_probs=63.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 040367 251 FVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVL 330 (400)
Q Consensus 251 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 330 (400)
..+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 344445555555566666666665555543 3345555555555666666666666666555542 22344555555566
Q ss_pred HhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc
Q 040367 331 FEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSY 370 (400)
Q Consensus 331 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 370 (400)
...|++++|...++++.+.. +.+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 66666666666666655542 2244555555555555444
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.89 E-value=4.3e-08 Score=75.76 Aligned_cols=155 Identities=13% Similarity=0.046 Sum_probs=74.6
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCChhhHHHHHHHHHhcCCH
Q 040367 227 KNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM----GC-THTVFSYSILINGYCKNKEI 301 (400)
Q Consensus 227 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~ 301 (400)
..|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +. +.....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345566666543333221 1223445555555566666666666666555431 10 11234455555556666666
Q ss_pred HHHHHHHHHHHhC----CCCC--chhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCc
Q 040367 302 EGALSLYGEMLSK----GIKP--DVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGV-AAD----TWTYRTFIDGLCKNSY 370 (400)
Q Consensus 302 ~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~ 370 (400)
++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..+... ..+ ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666665555432 1011 123445555555566666666666655543200 011 2234455555566666
Q ss_pred HHHHHHHHHHHH
Q 040367 371 IVEAVELFRTLR 382 (400)
Q Consensus 371 ~~~a~~~~~~~~ 382 (400)
+++|.+.+++..
T Consensus 163 ~~~A~~~~~~al 174 (203)
T 3gw4_A 163 LLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666655554
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.88 E-value=1.5e-08 Score=73.40 Aligned_cols=109 Identities=10% Similarity=-0.020 Sum_probs=77.7
Q ss_pred hHHHHhcCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 040367 4 FDYMLNMRPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCF 83 (400)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 83 (400)
|+.++...|. +...+..+...+.+.|++++|+..|+.+.... +.+...|..+..++...|++++|+..+++....+
T Consensus 7 l~~al~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 82 (142)
T 2xcb_A 7 LAMLRGLSED--TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD- 82 (142)
T ss_dssp --CCTTCCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHcCCHH--HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 3444444433 55666777777788888888888888877664 4467777777788888888888888888887764
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 040367 84 TPNAVTFTSLIKGLCAESRIMEAAALFTKLRVF 116 (400)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (400)
+.+...+..+..++...|++++|...|++..+.
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 335666777777888888888888888877665
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.87 E-value=1.1e-07 Score=79.90 Aligned_cols=87 Identities=9% Similarity=-0.108 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040367 286 FSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGL 365 (400)
Q Consensus 286 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (400)
..|..+..+|.+.|++++|+..++++++... .+...|..+..++...|++++|+..|+++++.. +.+...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 4444555555555555555555555554422 234445555555555555555555555555431 22344455555555
Q ss_pred HhcCcHHHH
Q 040367 366 CKNSYIVEA 374 (400)
Q Consensus 366 ~~~g~~~~a 374 (400)
.+.|++++|
T Consensus 275 ~~~~~~~~a 283 (336)
T 1p5q_A 275 QRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.83 E-value=2.9e-08 Score=71.90 Aligned_cols=97 Identities=12% Similarity=-0.049 Sum_probs=64.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 040367 251 FVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVL 330 (400)
Q Consensus 251 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 330 (400)
..+..+...+...|++++|...|+.+...+ +.+...|..+..++...|++++|...++++.+... .+...+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHH
Confidence 344555666667777777777777776654 44666666777777777777777777777766542 2455566666777
Q ss_pred HhhCcHHHHHHHHHHHHHc
Q 040367 331 FEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 331 ~~~~~~~~a~~~~~~~~~~ 349 (400)
...|++++|...|+++.+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777776654
No 150
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.82 E-value=1.1e-07 Score=67.22 Aligned_cols=60 Identities=8% Similarity=0.098 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 253 YNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLS 313 (400)
Q Consensus 253 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 313 (400)
+..+...+.+.|++++|+..|++..+.. |.+...|..+..+|...|++++|++.+++.++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444555555555555555555555443 33444455555555555555555555555443
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.82 E-value=1.2e-07 Score=67.00 Aligned_cols=95 Identities=12% Similarity=0.055 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHH
Q 040367 252 VYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLF 331 (400)
Q Consensus 252 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 331 (400)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|...+++.++.... +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 33444444555555555555555554443 334444445555555555555555555554443211 3344444444444
Q ss_pred hhCcHHHHHHHHHHHHH
Q 040367 332 EIHQVERAFKLFDEMQR 348 (400)
Q Consensus 332 ~~~~~~~a~~~~~~~~~ 348 (400)
..|++++|...|+++.+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555544443
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.80 E-value=1.7e-07 Score=66.13 Aligned_cols=99 Identities=6% Similarity=-0.013 Sum_probs=80.9
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIK 95 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (400)
+...|......+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+++.++.+ +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 45567778888888999999999998888764 4467888888888888999999999988888875 335777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 040367 96 GLCAESRIMEAAALFTKLRVF 116 (400)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~ 116 (400)
++...|++++|...|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 888889999998888888765
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.79 E-value=1.8e-07 Score=66.08 Aligned_cols=96 Identities=20% Similarity=0.207 Sum_probs=55.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcC--CCCC----HHHHHH
Q 040367 287 SYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDG--VAAD----TWTYRT 360 (400)
Q Consensus 287 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~ 360 (400)
.+..+...+.+.|++++|++.|+++++..+ .+...|..+..++...|++++|++.+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 345556666666666666666666665532 245556666666666666666666666655431 1111 234555
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHH
Q 040367 361 FIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 361 l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
+..++...|++++|++.|++.+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 56666666666666666666654
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.78 E-value=3.3e-07 Score=63.51 Aligned_cols=112 Identities=12% Similarity=-0.011 Sum_probs=84.8
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIK 95 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (400)
++..+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 45567778888888888888888888887764 4467788888888888888888888888888764 335677788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040367 96 GLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLIN 130 (400)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (400)
++...|++++|.+.+++..+.+ +.+...+..+..
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 114 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQN 114 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 8888888888888888887664 334455444433
No 155
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.77 E-value=5e-07 Score=72.17 Aligned_cols=187 Identities=10% Similarity=-0.053 Sum_probs=113.8
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCChhhHHHHHHHHHhcCCCCC---------------
Q 040367 29 KNKHYDTVLSLFKRLNSTGLFPDLYTYNIL-------INCFCKMGRVSHGFVVLGRILRSCFTPN--------------- 86 (400)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 86 (400)
..++...|.+.|.++.+.. +-....|..+ ...+...++..+++..+...... .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 5889999999999998875 4467788877 56666666677776666665542 111
Q ss_pred -------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccc
Q 040367 87 -------AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEG 159 (400)
Q Consensus 87 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 159 (400)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a----------- 161 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSA----------- 161 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTG-----------
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHh-----------
Confidence 1233445566777888888888887776543 43325555556666777755554444322
Q ss_pred chHHHHHHHHHHHhCCCCC--ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChHHHH
Q 040367 160 FVDKAKELFLQMKDENINP--DVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPN--VVTFNVIMDELCKNGKMDEAS 235 (400)
Q Consensus 160 ~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~ 235 (400)
.... .| ....+..+..++...|++++|+..|++.......|. .........++.+.|+.++|.
T Consensus 162 ------------~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~ 228 (282)
T 4f3v_A 162 ------------GKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAV 228 (282)
T ss_dssp ------------GGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ------------hccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHH
Confidence 1110 11 122455566667777777777777777664322132 234445555666677777777
Q ss_pred HHHHHHHHc
Q 040367 236 RLLDLMIQI 244 (400)
Q Consensus 236 ~~~~~~~~~ 244 (400)
..|+++...
T Consensus 229 ~~l~~a~a~ 237 (282)
T 4f3v_A 229 ALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777777664
No 156
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.76 E-value=4.8e-05 Score=62.62 Aligned_cols=221 Identities=12% Similarity=-0.009 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC--
Q 040367 162 DKAKELFLQMKDENINPDVVTYTSVIRGFCYAND----------WNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNG-- 229 (400)
Q Consensus 162 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 229 (400)
++|++..+.+...+ |-+...|+.--.++...+. +++++..++.+...+ +-+..+|+.-.-++.+.+
T Consensus 47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcc
Confidence 45566666665543 3344455544333333332 678888888888764 457777777766777777
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc----------
Q 040367 230 KMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGR-VNRAKELFVSMESMGCTHTVFSYSILINGYCKN---------- 298 (400)
Q Consensus 230 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------- 298 (400)
.+++++..++++.+... -+..+|+--..+....|. ++++++.+..+.+.+ +.|...|+.....+...
T Consensus 125 ~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 125 NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------
T ss_pred cHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcccccccc
Confidence 48899999999998753 377777777777777787 589999999998876 66788887776666554
Q ss_pred ----CCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhh-----------CcHHHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 040367 299 ----KEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEI-----------HQVERAFKLFDEMQRDGVAADT-WTYRTFI 362 (400)
Q Consensus 299 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~ 362 (400)
+.++++++.+.+.+...+. |...|+-+-..+.+. +.++++++.++++.+. .|+. ..+..++
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~~w~l~~~~ 279 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPENKWCLLTII 279 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--CcccchHHHHHH
Confidence 4578899999998887533 677777555555444 4688999999999986 4443 3332222
Q ss_pred H---HHHhcCcHHHHHHHHHHHHHhcccchhH
Q 040367 363 D---GLCKNSYIVEAVELFRTLRILKCELDIR 391 (400)
Q Consensus 363 ~---~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 391 (400)
. +....|..+++...+.++++ +.|-..
T Consensus 280 ~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~ 309 (331)
T 3dss_A 280 LLMRALDPLLYEKETLQYFSTLKA--VDPMRA 309 (331)
T ss_dssp HHHHHHCTTTTHHHHHHHHHHHHH--HCGGGH
T ss_pred HHHHhhcccccHHHHHHHHHHHHH--hCcchh
Confidence 2 22246788899999999986 455443
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.76 E-value=3.1e-08 Score=76.33 Aligned_cols=96 Identities=11% Similarity=-0.027 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC---------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 040367 217 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPN---------------AFVYNTLMDGFCLTGRVNRAKELFVSMESMGC 281 (400)
Q Consensus 217 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 281 (400)
.+..+...+...|++++|...|++..+...... ..++..+..+|...|++++|...++...+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 444555556666666666666666655321100 1333334444444444444444444444432
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 282 THTVFSYSILINGYCKNKEIEGALSLYGEMLS 313 (400)
Q Consensus 282 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 313 (400)
+.+...+..+..++...|++++|.+.|++..+
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 22333444444444444444444444444443
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.74 E-value=8.3e-07 Score=61.44 Aligned_cols=90 Identities=14% Similarity=0.065 Sum_probs=35.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCc
Q 040367 256 LMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQ 335 (400)
Q Consensus 256 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 335 (400)
+...+...|++++|...++...... +.+...+..+...+...|++++|...+++..+... .+...+..+..++...|+
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNR 87 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhh
Confidence 3333344444444444444443332 22333333344444444444444444444433321 123333333444444444
Q ss_pred HHHHHHHHHHHH
Q 040367 336 VERAFKLFDEMQ 347 (400)
Q Consensus 336 ~~~a~~~~~~~~ 347 (400)
+++|.+.+++..
T Consensus 88 ~~~A~~~~~~~~ 99 (118)
T 1elw_A 88 FEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 159
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.74 E-value=2.1e-07 Score=63.89 Aligned_cols=101 Identities=8% Similarity=0.027 Sum_probs=77.7
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC--ChhhHHH
Q 040367 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP--NAVTFTS 92 (400)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ 92 (400)
.+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++..+.. +. +...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 356677778888888888888888888887764 4467777788888888888888888888887763 23 4667777
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHcC
Q 040367 93 LIKGLCAE-SRIMEAAALFTKLRVFG 117 (400)
Q Consensus 93 l~~~~~~~-~~~~~a~~~~~~~~~~~ 117 (400)
+..++... |++++|.+.+++.....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 77888888 88888888888877664
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.72 E-value=4.9e-07 Score=69.52 Aligned_cols=156 Identities=15% Similarity=-0.019 Sum_probs=106.9
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh----------------hhH
Q 040367 225 LCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTV----------------FSY 288 (400)
Q Consensus 225 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~ 288 (400)
....|+++.+.+.++...... ......+..+...+...|++++|...|.+..+.. +.+. ..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp --------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHH
Confidence 334455555555444322210 1134456678888999999999999999998764 2233 678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 040367 289 SILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKN 368 (400)
Q Consensus 289 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 368 (400)
..+..+|...|++++|...++++++.. +.+...+..+..++...|++++|.+.|+++.+.. +.+...+..+..++...
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHH
Confidence 889999999999999999999999874 3367788899999999999999999999998863 34677888888888888
Q ss_pred CcHHHHH-HHHHHHHHh
Q 040367 369 SYIVEAV-ELFRTLRIL 384 (400)
Q Consensus 369 g~~~~a~-~~~~~~~~~ 384 (400)
|+.+++. ..+..+...
T Consensus 170 ~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 170 KEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHC------------
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 8887777 556666543
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=9.3e-07 Score=64.16 Aligned_cols=112 Identities=12% Similarity=0.029 Sum_probs=89.2
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhH
Q 040367 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD----LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTF 90 (400)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 90 (400)
.+...+..+...+.+.|++++|+..|++..+.. |+ ...+..+..++...|++++|...+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 466778888889999999999999999998763 55 6778888888999999999999999988764 3367778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040367 91 TSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLIN 130 (400)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (400)
..+..++...|++++|...|++..+.. +.+...+..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 888888999999999999999988764 334555444433
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.71 E-value=3.3e-07 Score=62.83 Aligned_cols=99 Identities=10% Similarity=-0.000 Sum_probs=69.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCC--CHHHHHHH
Q 040367 284 TVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAA--DTWTYRTF 361 (400)
Q Consensus 284 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 361 (400)
+...+..+...+...|++++|...++++.+... .+...+..+..++...|++++|...++++.+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 445566667777777777777777777776532 245666677777777777777777777777652 23 46677777
Q ss_pred HHHHHhc-CcHHHHHHHHHHHHHh
Q 040367 362 IDGLCKN-SYIVEAVELFRTLRIL 384 (400)
Q Consensus 362 ~~~~~~~-g~~~~a~~~~~~~~~~ 384 (400)
...+.+. |++++|.+.+++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 7777777 7888888777777754
No 163
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.70 E-value=3e-06 Score=73.90 Aligned_cols=195 Identities=9% Similarity=0.031 Sum_probs=109.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CCH
Q 040367 188 RGFCYANDWNEAKCLLIEMMDQGVQPN----------------VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR-PNA 250 (400)
Q Consensus 188 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 250 (400)
..+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+.++.+.... ++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445566777777777777665421110 113556666777777777777777666543111 111
Q ss_pred ----HhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC--C
Q 040367 251 ----FVYNTLMDGFCLTGRVNRAKELFVSMESM----GCT-HTVFSYSILINGYCKNKEIEGALSLYGEMLSK--GI--K 317 (400)
Q Consensus 251 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~--~ 317 (400)
.+.+.+...+...|+++.|..++...... +.. .-..++..+...|...|++++|..+++++... +. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 12223333444556777777777665431 111 12345566777777777777777777766542 11 1
Q ss_pred -CchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 040367 318 -PDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD--GVAAD----TWTYRTFIDGLCKNSYIVEAVELFRTLR 382 (400)
Q Consensus 318 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 382 (400)
....++..++..|...|++++|..++++.... .+..+ ...+..+...+...|++++|...|.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11335666667777777777777777766532 11111 2344555556666777777777666664
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.69 E-value=3.3e-07 Score=65.65 Aligned_cols=100 Identities=14% Similarity=0.046 Sum_probs=82.8
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 040367 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLI 94 (400)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (400)
.+...|..+...+.+.|++++|+..|+...... +.+...+..+..++...|++++|...++...+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 467788888888899999999999999888764 4467888888888889999999999998888775 33677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 040367 95 KGLCAESRIMEAAALFTKLRVF 116 (400)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~ 116 (400)
.++...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 8888899999999888887765
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.69 E-value=9.6e-07 Score=65.54 Aligned_cols=98 Identities=12% Similarity=0.083 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 040367 215 VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILING 294 (400)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (400)
...+..+...+.+.|++++|...|++.++.. +.+...+..+..+|...|++++|+..+++..+.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445555555555566666666665555542 2244555555555555555555555555555543 3345555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 040367 295 YCKNKEIEGALSLYGEMLSK 314 (400)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~ 314 (400)
+...|++++|.+.|++.++.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 55555555555555555543
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.69 E-value=1.3e-06 Score=62.49 Aligned_cols=96 Identities=14% Similarity=0.014 Sum_probs=42.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 040367 250 AFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVV 329 (400)
Q Consensus 250 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 329 (400)
...+..+...+...|++++|...|....... +.+...+..+..++...|++++|...+++..+.... +...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence 3334444444444444444444444444433 223444444444444444444444444444443211 33344444444
Q ss_pred HHhhCcHHHHHHHHHHHH
Q 040367 330 LFEIHQVERAFKLFDEMQ 347 (400)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~ 347 (400)
+...|++++|...|+++.
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 444444444444444444
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.69 E-value=7.2e-07 Score=66.22 Aligned_cols=99 Identities=8% Similarity=-0.054 Sum_probs=73.6
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIK 95 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (400)
+...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+++.++.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45667777777788888888888888777664 3467777777777888888888888888777764 335667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 040367 96 GLCAESRIMEAAALFTKLRVF 116 (400)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~ 116 (400)
++...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777788888888887777765
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.67 E-value=1.9e-07 Score=66.23 Aligned_cols=114 Identities=10% Similarity=0.046 Sum_probs=89.1
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC--CCC----hhh
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCF--TPN----AVT 89 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~ 89 (400)
....|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++++..... .++ ..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 34577888888999999999999999988764 45778888888999999999999999998877632 112 667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040367 90 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGL 132 (400)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 132 (400)
+..+..++...|++++|.+.|++..+. .|+......+....
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 788888889999999999999988876 35666555555443
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.65 E-value=4.8e-07 Score=64.03 Aligned_cols=96 Identities=9% Similarity=0.127 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCc----hhhHHHH
Q 040367 253 YNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGI--KPD----VVIYNTL 326 (400)
Q Consensus 253 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~l 326 (400)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3444445555555555555555554443 33444455555555555555555555555444311 001 3344455
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHc
Q 040367 327 FVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 327 ~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
..++...|++++|.+.|+++.+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 55555555555555555555543
No 170
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.63 E-value=0.00012 Score=60.29 Aligned_cols=172 Identities=11% Similarity=-0.043 Sum_probs=115.6
Q ss_pred hccCChh-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 040367 28 AKNKHYD-TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR----------VSHGFVVLGRILRSCFTPNAVTFTSLIKG 96 (400)
Q Consensus 28 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (400)
.+.|.++ +|+.+++.+...+ |-+..+|+.--.++...+. +++++.+++.++... +-+..+|+.-..+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4566665 7999999999875 3355566655444444433 678889999988875 3478888888777
Q ss_pred HHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHh
Q 040367 97 LCAES--RIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHT-IVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKD 173 (400)
Q Consensus 97 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (400)
+...+ .+++++.+++++.+.. +.|..+|+.-...+...|.. ++++. .++++.+
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~-----------------------~~~~~I~ 173 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELA-----------------------FTDSLIT 173 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHH-----------------------HHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHH-----------------------HHHHHHH
Confidence 77777 4889999999999886 56888888877777777762 44444 4444444
Q ss_pred CCCCCChHhHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040367 174 ENINPDVVTYTSVIRGFCYA--------------NDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK 227 (400)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 227 (400)
.+ +-|..+|+.....+... +.++++++.+...+... |-|...|+-+-..+.+
T Consensus 174 ~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 174 RN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGA 239 (331)
T ss_dssp HC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHS
T ss_pred HC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 43 44667777666555544 34677777777777653 4466666544444433
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.63 E-value=5.9e-07 Score=62.74 Aligned_cols=94 Identities=10% Similarity=-0.065 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 040367 288 YSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCK 367 (400)
Q Consensus 288 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 367 (400)
+..+...+.+.|++++|...++++++... .+...|..+..++...|++++|+..|+++.+.. +.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34445555666666666666666665432 245555566666666666666666666666542 2245556666666666
Q ss_pred cCcHHHHHHHHHHHHH
Q 040367 368 NSYIVEAVELFRTLRI 383 (400)
Q Consensus 368 ~g~~~~a~~~~~~~~~ 383 (400)
.|++++|+..+++.++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666654
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.63 E-value=5.8e-07 Score=62.81 Aligned_cols=96 Identities=8% Similarity=-0.103 Sum_probs=60.9
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 040367 19 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLC 98 (400)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (400)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..+++.++.. +.+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45555566666777777777777666653 3356666666666667777777777777666654 224556666666666
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 040367 99 AESRIMEAAALFTKLRVF 116 (400)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~ 116 (400)
..|++++|...+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 667777777666666543
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.62 E-value=3.5e-06 Score=73.48 Aligned_cols=200 Identities=10% Similarity=0.009 Sum_probs=127.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC----------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccc
Q 040367 96 GLCAESRIMEAAALFTKLRVFGCEP----------------NVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEG 159 (400)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 159 (400)
.+.+.|++++|++.|..+.+..... ...++..++..|...|++++|.+.+..+..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~--------- 83 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE--------- 83 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH---------
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------
Confidence 3445566666666666655432110 012467789999999998888887766532
Q ss_pred chHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhCCChHHH
Q 040367 160 FVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMD----QGVQP-NVVTFNVIMDELCKNGKMDEA 234 (400)
Q Consensus 160 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a 234 (400)
++....+. .......+.+...+...|+++.|..+++.... .+..+ -..++..+...+...|++++|
T Consensus 84 -------~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (434)
T 4b4t_Q 84 -------YMMQFAKS--KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDS 154 (434)
T ss_dssp -------HHHTSCHH--HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHH
T ss_pred -------HHHHccch--HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHH
Confidence 11111100 00112233344455567888999988887753 22222 245777888899999999999
Q ss_pred HHHHHHHHHc--CCC---CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC--hhhHHHHHHHHHhcCCHHH
Q 040367 235 SRLLDLMIQI--GVR---PNAFVYNTLMDGFCLTGRVNRAKELFVSMESM----GCTHT--VFSYSILINGYCKNKEIEG 303 (400)
Q Consensus 235 ~~~~~~~~~~--~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~ 303 (400)
..+++++... +.. ....++..++..|...|++++|...+++.... ..++. ...+..+...+...+++++
T Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~ 234 (434)
T 4b4t_Q 155 LALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKT 234 (434)
T ss_dssp HHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999887654 111 12456778888999999999999999887542 11111 2445666777788899999
Q ss_pred HHHHHHHHHh
Q 040367 304 ALSLYGEMLS 313 (400)
Q Consensus 304 a~~~~~~~~~ 313 (400)
|...|.+..+
T Consensus 235 A~~~~~~a~~ 244 (434)
T 4b4t_Q 235 AFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888877654
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=3e-06 Score=61.42 Aligned_cols=93 Identities=11% Similarity=-0.013 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 040367 253 YNTLMDGFCLTGRVNRAKELFVSMESMGCTHT----VFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFV 328 (400)
Q Consensus 253 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 328 (400)
+..+...+...|++++|...|++..+.. |+ ...+..+..++...|++++|...+++..+... .+...+..+..
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~ 107 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHHHHHH
Confidence 3333444444444444444444444332 22 23344444444444444444444444443321 12333444444
Q ss_pred HHHhhCcHHHHHHHHHHHHH
Q 040367 329 VLFEIHQVERAFKLFDEMQR 348 (400)
Q Consensus 329 ~~~~~~~~~~a~~~~~~~~~ 348 (400)
++...|++++|...|++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444444443
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.56 E-value=6.9e-07 Score=65.92 Aligned_cols=131 Identities=14% Similarity=0.021 Sum_probs=72.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-chhh
Q 040367 253 YNTLMDGFCLTGRVNRAKELFVSMESMGCT-HT----VFSYSILINGYCKNKEIEGALSLYGEMLSK----GIKP-DVVI 322 (400)
Q Consensus 253 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 322 (400)
+..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|.+.+++..+. +..+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444444555555555555555554332100 01 124555566666666666666666655442 1000 1334
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 323 YNTLFVVLFEIHQVERAFKLFDEMQRD----GVA-ADTWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 323 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
+..+...+...|++++|.+.+++..+. +.. .....+..+...+...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555666667777777777777766543 111 1134566677777778888888888777764
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.56 E-value=2.7e-07 Score=81.31 Aligned_cols=126 Identities=7% Similarity=-0.053 Sum_probs=101.6
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 040367 18 CSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGL 97 (400)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (400)
..+..+...+.+.|++++|++.|++..+.. +.+..++..+..++.+.|++++|++.+++..+.. +.+...+..+..+|
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 84 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344555667788999999999999998874 4468899999999999999999999999999875 34678899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChHHHHHHHH
Q 040367 98 CAESRIMEAAALFTKLRVFGCEPNVFTYNTLING--LYRTGHTIVALNLFE 146 (400)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 146 (400)
...|++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|+..++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999998874 3345566666655 888899999999888
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.53 E-value=6e-07 Score=78.73 Aligned_cols=125 Identities=10% Similarity=-0.020 Sum_probs=100.5
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD---------------LYTYNILINCFCKMGRVSHGFVVLGRILR 80 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 80 (400)
....|..+...+.+.|++++|+..|+++.+.. +.+ ..+|..+..++.+.|++++|+..++++++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 45578888889999999999999999988753 223 57888999999999999999999999988
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 040367 81 SCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALN 143 (400)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 143 (400)
.. +.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++.+.++.+++.+
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 75 3467888889999999999999999999998764 4466778888888888887766653
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.52 E-value=2e-06 Score=63.65 Aligned_cols=99 Identities=8% Similarity=0.019 Sum_probs=60.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhc--------C---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040367 250 AFVYNTLMDGFCLTGRVNRAKELFVSMESM--------G---------CTHTVFSYSILINGYCKNKEIEGALSLYGEML 312 (400)
Q Consensus 250 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 312 (400)
...+......+.+.|++++|...|.+.... . .+.+...|..+..+|.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445666777777778888888888777654 0 01223455556666666666666666666666
Q ss_pred hCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 313 SKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 313 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
+... .+...|..+..++...|++++|...|++.++.
T Consensus 91 ~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 5532 24555566666666666666666666666654
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.52 E-value=2e-07 Score=64.78 Aligned_cols=86 Identities=13% Similarity=0.027 Sum_probs=47.0
Q ss_pred cCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 040367 30 NKHYDTVLSLFKRLNSTG--LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAA 107 (400)
Q Consensus 30 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 107 (400)
.|++++|+..|++..+.+ -+.+..++..+..++...|++++|+..+++.++.. +.+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 456666666666666543 12234455566666666666666666666666553 224555555666666666666666
Q ss_pred HHHHHHHHc
Q 040367 108 ALFTKLRVF 116 (400)
Q Consensus 108 ~~~~~~~~~ 116 (400)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666665544
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.51 E-value=1.4e-06 Score=64.30 Aligned_cols=97 Identities=14% Similarity=0.107 Sum_probs=53.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-Cchh
Q 040367 252 VYNTLMDGFCLTGRVNRAKELFVSMESMGC----T-HTVFSYSILINGYCKNKEIEGALSLYGEMLSK----GIK-PDVV 321 (400)
Q Consensus 252 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~ 321 (400)
++..+...+...|++++|...+++..+... + .....+..+...+...|++++|.+.+++..+. +.. ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 344445555555555555555555433210 0 01334555666666677777777766665542 111 1133
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHHHH
Q 040367 322 IYNTLFVVLFEIHQVERAFKLFDEMQR 348 (400)
Q Consensus 322 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 348 (400)
.+..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456666777777888888887777664
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.51 E-value=7.5e-06 Score=57.69 Aligned_cols=92 Identities=13% Similarity=0.109 Sum_probs=44.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc---hhhHHHHHHH
Q 040367 256 LMDGFCLTGRVNRAKELFVSMESMGCTHTV---FSYSILINGYCKNKEIEGALSLYGEMLSKGIKPD---VVIYNTLFVV 329 (400)
Q Consensus 256 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 329 (400)
+...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...++++.+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 3344445555555555555555432 1122 24444555555555555555555555543211 1 3334444555
Q ss_pred HHhhCcHHHHHHHHHHHHHc
Q 040367 330 LFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~ 349 (400)
+...|++++|...|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 55555555555555555543
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.51 E-value=5.3e-07 Score=79.42 Aligned_cols=119 Identities=13% Similarity=0.061 Sum_probs=60.0
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 040367 224 ELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEG 303 (400)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 303 (400)
.+.+.|++++|.+.++++.+.. +.+..++..+..+|.+.|++++|...+++..+.. +.+...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3445566666666666665542 2235555555556666666666666666655553 3345555555556666666666
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHH--HHhhCcHHHHHHHHHH
Q 040367 304 ALSLYGEMLSKGIKPDVVIYNTLFVV--LFEIHQVERAFKLFDE 345 (400)
Q Consensus 304 a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~ 345 (400)
|.+.++++.+.... +...+..+..+ +.+.|++++|++.+++
T Consensus 93 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 66666655554211 22333333333 4455555555555443
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.49 E-value=7.2e-06 Score=57.81 Aligned_cols=97 Identities=13% Similarity=-0.002 Sum_probs=71.7
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC---hhhHHH
Q 040367 19 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL---YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPN---AVTFTS 92 (400)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ 92 (400)
.+..+...+.+.|++++|+..|+.+.+.. +.+. ..+..+..++...|++++|...++++.+.... + ...+..
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~ 81 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLK 81 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHH
Confidence 34556677788888888888888887753 2233 46777788888888888888888888776422 3 556777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 040367 93 LIKGLCAESRIMEAAALFTKLRVFG 117 (400)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~ 117 (400)
+..++...|++++|...|+++.+..
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 7788888888888888888887763
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.48 E-value=5e-06 Score=72.90 Aligned_cols=131 Identities=9% Similarity=-0.038 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040367 215 VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPN--------------AFVYNTLMDGFCLTGRVNRAKELFVSMESMG 280 (400)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 280 (400)
...+..+...+.+.|++++|...|+++++...... ...+..+..+|.+.|++++|+..++++.+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34555566666677777777777776666422111 4667777778888888888888888887765
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHH-HHHHHH
Q 040367 281 CTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFK-LFDEMQ 347 (400)
Q Consensus 281 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~ 347 (400)
+.+...|..+..+|...|++++|...|+++++... .+...+..+..++...++.+++.+ .+..|.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888888888888888888888877642 245566777777777777776653 334443
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.48 E-value=3e-06 Score=71.89 Aligned_cols=91 Identities=10% Similarity=-0.052 Sum_probs=66.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040367 284 TVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFID 363 (400)
Q Consensus 284 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 363 (400)
+...|..+..+|.+.|++++|++.++++++... .+...+..+..++...|++++|++.|+++.+.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 456677788888888888888888888887643 256677778888888888888888888887762 235666777777
Q ss_pred HHHhcCcHHHHHH
Q 040367 364 GLCKNSYIVEAVE 376 (400)
Q Consensus 364 ~~~~~g~~~~a~~ 376 (400)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777776666544
No 186
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.42 E-value=1.3e-05 Score=57.35 Aligned_cols=110 Identities=9% Similarity=-0.078 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHh----hCcHHHHH
Q 040367 265 RVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFE----IHQVERAF 340 (400)
Q Consensus 265 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 340 (400)
++++|...|++..+.+ .+... |...|...+..++|.++|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4555666666655554 22222 4555555555556666666666553 44455555555555 55666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHhc
Q 040367 341 KLFDEMQRDGVAADTWTYRTFIDGLCK----NSYIVEAVELFRTLRILK 385 (400)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 385 (400)
++|++..+.| +......|...|.. .+++++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666543 44555555556655 566666666666666554
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.42 E-value=6.8e-07 Score=62.04 Aligned_cols=86 Identities=13% Similarity=0.094 Sum_probs=54.7
Q ss_pred cCCHHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHH
Q 040367 263 TGRVNRAKELFVSMESMG--CTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAF 340 (400)
Q Consensus 263 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 340 (400)
.|++++|+..|++..+.+ -+.+...+..+..+|...|++++|.+.++++++..+. +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 566777777777776652 1334556666777777777777777777777765432 4566666777777777777777
Q ss_pred HHHHHHHHc
Q 040367 341 KLFDEMQRD 349 (400)
Q Consensus 341 ~~~~~~~~~ 349 (400)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776654
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.41 E-value=5.7e-06 Score=61.13 Aligned_cols=100 Identities=13% Similarity=0.025 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHc--------C---------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040367 215 VVTFNVIMDELCKNGKMDEASRLLDLMIQI--------G---------VRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 277 (400)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 277 (400)
...+......+.+.|++++|...|.+.+.. . .+.+...+..+..+|.+.|++++|...++.+.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456777788888999999999999988775 0 01134577788888999999999999999998
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040367 278 SMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKG 315 (400)
Q Consensus 278 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 315 (400)
+.+ +.+...|..+..+|...|++++|...|++.++..
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 876 5678888889999999999999999999888863
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.39 E-value=8e-06 Score=69.28 Aligned_cols=122 Identities=12% Similarity=-0.002 Sum_probs=82.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHc---------------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040367 218 FNVIMDELCKNGKMDEASRLLDLMIQI---------------GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCT 282 (400)
Q Consensus 218 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 282 (400)
+..+...+.+.|++++|...|+++++. ..+.+..++..+..+|.+.|++++|+..++++.+.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 444445555555666655555555541 011234667777888888888888888888888765 4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHH
Q 040367 283 HTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFK 341 (400)
Q Consensus 283 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 341 (400)
.+...+..+..+|...|++++|.+.++++.+.... +...+..+..++...++.+++.+
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888888888888876422 55566666666666666666543
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.37 E-value=6.8e-06 Score=59.22 Aligned_cols=62 Identities=15% Similarity=0.016 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHHHHc-----CCCCC-HHHH----HHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 322 IYNTLFVVLFEIHQVERAFKLFDEMQRD-----GVAAD-TWTY----RTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 322 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
.|..+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|+..|++.++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6667777777777777777777777663 11343 4566 6777777888888888888887764
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.35 E-value=3.4e-06 Score=73.89 Aligned_cols=132 Identities=8% Similarity=-0.107 Sum_probs=98.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHH
Q 040367 96 GLCAESRIMEAAALFTKLRVFG---CEP----NVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELF 168 (400)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~ 168 (400)
.+...|++++|+.++++.++.. +.+ ...+++.|..+|...|++++|..++ +++++++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~----------------~~aL~i~ 381 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYA----------------RRMVDGY 381 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH----------------HHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHH----------------HHHHHHH
Confidence 3557899999999999887641 112 3567899999999999999999985 4566777
Q ss_pred HHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 040367 169 LQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQ-----GV--QPNVVTFNVIMDELCKNGKMDEASRLLDLM 241 (400)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 241 (400)
++......+....+++.|...|...|++++|..++++..+. |. +....+...+-.++...+.+++|+.++.++
T Consensus 382 ~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 382 MKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766654555678999999999999999999999987642 31 112234455566666777788888888777
Q ss_pred HH
Q 040367 242 IQ 243 (400)
Q Consensus 242 ~~ 243 (400)
.+
T Consensus 462 ~~ 463 (490)
T 3n71_A 462 RE 463 (490)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.34 E-value=2.2e-06 Score=71.89 Aligned_cols=129 Identities=10% Similarity=0.047 Sum_probs=72.5
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHH------------------HHHHHHHHHHhcCChhhHHHHHHH
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLY------------------TYNILINCFCKMGRVSHGFVVLGR 77 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~ 77 (400)
....+..+...+.+.|++++|+..|++.... .|+.. +|..+..++.+.|++++|+..+++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3445777888888999999999999988765 24433 667777777778888888888887
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHH
Q 040367 78 ILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGL-YRTGHTIVALNLFEEM 148 (400)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~ 148 (400)
.++.. +.+...+..+..+|...|++++|...|++..+.. +.+...+..+.... ...+..+.+...|..+
T Consensus 256 al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~ 325 (338)
T 2if4_A 256 VLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGI 325 (338)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77764 3356677777777888888888888887776543 22344444444432 2233434444444443
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.33 E-value=6.7e-06 Score=72.06 Aligned_cols=132 Identities=10% Similarity=-0.063 Sum_probs=103.1
Q ss_pred HHHhcCChhhHHHHHHHHHhcC---C---CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHHHHH
Q 040367 61 CFCKMGRVSHGFVVLGRILRSC---F---TP-NAVTFTSLIKGLCAESRIMEAAALFTKLRVF-----G-CEP-NVFTYN 126 (400)
Q Consensus 61 ~~~~~~~~~~a~~~~~~~~~~~---~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~ 126 (400)
.+...|++++|+.++++.+... + .| ...+++.|..+|...|++++|..++++.++. | -.| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557899999999998887641 1 12 2457899999999999999999999987653 3 112 356789
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 040367 127 TLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEM 206 (400)
Q Consensus 127 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 206 (400)
.|...|...|++++|..++ ++|+++++.....+.+....+.+.+..++...+.+++|..+|..+
T Consensus 398 nLa~~~~~~G~~~eA~~~~----------------~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMI----------------CKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHH----------------HHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHH----------------HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999984 567778877776654445556677777888899999999999998
Q ss_pred Hh
Q 040367 207 MD 208 (400)
Q Consensus 207 ~~ 208 (400)
.+
T Consensus 462 ~~ 463 (490)
T 3n71_A 462 RE 463 (490)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.30 E-value=0.00014 Score=65.33 Aligned_cols=173 Identities=7% Similarity=-0.017 Sum_probs=133.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 040367 195 DWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGK----------MDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG 264 (400)
Q Consensus 195 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 264 (400)
..++|++.++++...+ +-+...|+.--.++...|+ ++++++.++.+.+... -+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcc
Confidence 3467899999998864 4456667666566666666 8999999999988753 37778887777888888
Q ss_pred --CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhh--------
Q 040367 265 --RVNRAKELFVSMESMGCTHTVFSYSILINGYCKNK-EIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEI-------- 333 (400)
Q Consensus 265 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 333 (400)
+++++...++++.+.+ +.+...|+.-...+...| .++++++.+.++++..+. |...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 6799999999999887 668888888888888888 889999999999887654 777888777766553
Q ss_pred ------CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHH
Q 040367 334 ------HQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIV 372 (400)
Q Consensus 334 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 372 (400)
+.++++++.+++++... +-+...|..+...+.+.++.+
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 66889999999888763 346778887777777766643
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.30 E-value=1.7e-05 Score=57.20 Aligned_cols=97 Identities=13% Similarity=0.008 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC------C-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------
Q 040367 54 TYNILINCFCKMGRVSHGFVVLGRILRSCFTP------N-----AVTFTSLIKGLCAESRIMEAAALFTKLRVF------ 116 (400)
Q Consensus 54 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 116 (400)
.+......+.+.|++++|+..|++.++..+.. + ...|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34555566666677777777777766653220 1 227788888888888888888888888775
Q ss_pred -CCCCCHHHH----HHHHHHHHhcCChHHHHHHHHHHHcC
Q 040367 117 -GCEPNVFTY----NTLINGLYRTGHTIVALNLFEEMASG 151 (400)
Q Consensus 117 -~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (400)
. +-+...| .....++...|++++|+..|++..+.
T Consensus 93 ~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 93 LN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4 3456677 88888999999988888888877554
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.27 E-value=5.1e-06 Score=69.68 Aligned_cols=148 Identities=7% Similarity=-0.069 Sum_probs=78.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 040367 181 VTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGF 260 (400)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (400)
..+..+...+.+.|++++|+..|++..... |+... +...++.+++...+. ...+..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 456667777888888888888888877642 33221 122233333322221 13566777888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHH-HHhhCcHHHH
Q 040367 261 CLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVV-LFEIHQVERA 339 (400)
Q Consensus 261 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a 339 (400)
.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|+++.+.... +...+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888765 456777888888888888888888888888765322 34444444444 2345667777
Q ss_pred HHHHHHHHHc
Q 040367 340 FKLFDEMQRD 349 (400)
Q Consensus 340 ~~~~~~~~~~ 349 (400)
..+|..|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7888877754
No 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.26 E-value=0.00017 Score=64.76 Aligned_cols=172 Identities=9% Similarity=-0.077 Sum_probs=135.0
Q ss_pred hHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-
Q 040367 161 VDKAKELFLQMKDENINPDVVTYTSVIRGFCYAND----------WNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNG- 229 (400)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 229 (400)
.++|++.++++...+ |-+..+|+.--.++...|+ ++++++.++.+.+.+ +-+..+|..-.-++.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 466777777777654 4456677776666666666 899999999999875 557788888878888888
Q ss_pred -ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc---------
Q 040367 230 -KMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG-RVNRAKELFVSMESMGCTHTVFSYSILINGYCKN--------- 298 (400)
Q Consensus 230 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 298 (400)
+++++++.++++.+.... +..+|+.-..+..+.| .++++.+.+.++.+.+ +-|...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 679999999999998543 7888888888888888 8999999999998876 56788888877776663
Q ss_pred -----CCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHH
Q 040367 299 -----KEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVE 337 (400)
Q Consensus 299 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 337 (400)
+.++++++.+.+++...+. +...|..+...+.+.++++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence 5678999999999987533 7778888877777766633
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.25 E-value=4e-05 Score=54.74 Aligned_cols=110 Identities=13% Similarity=0.044 Sum_probs=56.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHHHHH
Q 040367 230 KMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCK----NKEIEGAL 305 (400)
Q Consensus 230 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 305 (400)
++++|.+.|++..+.| .+... +...|...+..++|...|++..+.+ ++..+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3455555555555544 11211 4444444455555555555555543 34445555555554 45556666
Q ss_pred HHHHHHHhCCCCCchhhHHHHHHHHHh----hCcHHHHHHHHHHHHHcC
Q 040367 306 SLYGEMLSKGIKPDVVIYNTLFVVLFE----IHQVERAFKLFDEMQRDG 350 (400)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 350 (400)
++|++..+.| +...+..+...|.. .+++++|..+|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6665555543 34444555555554 555666666666555543
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.13 E-value=2.3e-05 Score=53.97 Aligned_cols=79 Identities=11% Similarity=0.057 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040367 35 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLR 114 (400)
Q Consensus 35 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 114 (400)
.|+..|++..+.. +.+...+..+...+...|++++|+..+++.++.. +.+...+..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666665543 3345566666666666666666666666666553 2244555556666666666666666666555
Q ss_pred H
Q 040367 115 V 115 (400)
Q Consensus 115 ~ 115 (400)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.12 E-value=1.6e-05 Score=57.11 Aligned_cols=87 Identities=7% Similarity=-0.079 Sum_probs=59.7
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH----------HHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 040367 261 CLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEI----------EGALSLYGEMLSKGIKPDVVIYNTLFVVL 330 (400)
Q Consensus 261 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 330 (400)
.+.+.+++|...++...+.+ +.+...|..+..++...+++ ++|+..|++.++..+. +...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 45566778888888877776 55777777777777777654 4777777777776433 456677777777
Q ss_pred HhhC-----------cHHHHHHHHHHHHHc
Q 040367 331 FEIH-----------QVERAFKLFDEMQRD 349 (400)
Q Consensus 331 ~~~~-----------~~~~a~~~~~~~~~~ 349 (400)
...| ++++|++.|+++++.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 6653 677777777777664
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.11 E-value=2.9e-05 Score=53.40 Aligned_cols=79 Identities=16% Similarity=0.091 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHH
Q 040367 268 RAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQ 347 (400)
Q Consensus 268 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 347 (400)
.|...|++..+.. +.+...+..+...+...|++++|...+++.++... .+...|..+..++...|++++|...|+++.
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555443 33455556666666666666666666666655432 234455556666666666666666666655
Q ss_pred H
Q 040367 348 R 348 (400)
Q Consensus 348 ~ 348 (400)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.10 E-value=3.7e-06 Score=57.50 Aligned_cols=63 Identities=11% Similarity=0.082 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 040367 53 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVF 116 (400)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (400)
..+..+...+...|++++|.+.+++.++.. +.+...+..+..++...|++++|.+.+++..+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344444444455555555555555544442 223444444555555555555555555555443
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.08 E-value=2e-05 Score=56.64 Aligned_cols=86 Identities=7% Similarity=-0.040 Sum_probs=53.8
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH----------HHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 040367 227 KNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRV----------NRAKELFVSMESMGCTHTVFSYSILINGYC 296 (400)
Q Consensus 227 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 296 (400)
+.+.+++|.+.+++..+.. +.+...+..+..++...+++ ++|+..|++..+.+ +.+...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 4455666666776666653 23556666666666666553 36777777766665 445566666777766
Q ss_pred hcC-----------CHHHHHHHHHHHHhC
Q 040367 297 KNK-----------EIEGALSLYGEMLSK 314 (400)
Q Consensus 297 ~~~-----------~~~~a~~~~~~~~~~ 314 (400)
..| ++++|.+.|+++++.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 553 677777777777664
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.99 E-value=3.6e-05 Score=52.40 Aligned_cols=60 Identities=13% Similarity=0.075 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 253 YNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLS 313 (400)
Q Consensus 253 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 313 (400)
+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+++.++
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3334444444444444444444444432 22334444444444444444444444444443
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.99 E-value=0.00012 Score=47.63 Aligned_cols=77 Identities=18% Similarity=0.135 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040367 54 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGL 132 (400)
Q Consensus 54 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 132 (400)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34444444444455555555554444432 1233444444455555555555555555544432 22334444443333
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.99 E-value=0.00012 Score=47.54 Aligned_cols=60 Identities=15% Similarity=0.246 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHH
Q 040367 288 YSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQR 348 (400)
Q Consensus 288 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 348 (400)
+..+...+...|++++|...+++..+... .+...+..+..++...|++++|...+++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33333344444444444444444433321 1233333444444444444444444444443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.85 E-value=5.9e-05 Score=50.33 Aligned_cols=65 Identities=17% Similarity=0.113 Sum_probs=46.0
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS 81 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (400)
++..+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|.+.+++.++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66677777777777777777777777777654 335566777777777777777777777776643
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.85 E-value=0.00096 Score=55.27 Aligned_cols=72 Identities=11% Similarity=0.009 Sum_probs=43.1
Q ss_pred CchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchhHHH
Q 040367 318 PDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDIRAY 393 (400)
Q Consensus 318 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 393 (400)
.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.+++.... .|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 345555555555555666666666666666653 55555555566666666666666666666653 4444443
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.81 E-value=0.00011 Score=48.90 Aligned_cols=64 Identities=16% Similarity=0.079 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040367 51 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRV 115 (400)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 115 (400)
+...+..+..++...|++++|+..|+++++.+ +.+...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555555556666666666666666655543 22344555555555666666666665555543
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.63 E-value=0.00025 Score=61.11 Aligned_cols=94 Identities=7% Similarity=-0.146 Sum_probs=74.5
Q ss_pred hcCCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHH
Q 040367 99 AESRIMEAAALFTKLRVFG---CEP----NVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQM 171 (400)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 171 (400)
..|++++|+.++++..+.. +.| ...+++.|..+|...|++++|..++ +++++++++.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~----------------~~aL~i~~~~ 373 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYG----------------QKIIKPYSKH 373 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH----------------HHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHH----------------HHHHHHHHHH
Confidence 3578999999999877631 122 2467899999999999999999985 4566777777
Q ss_pred HhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 172 KDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMD 208 (400)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 208 (400)
.....+....+++.|...|...|++++|+.++++..+
T Consensus 374 lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 374 YPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 6665444567899999999999999999999998764
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.54 E-value=0.00048 Score=59.43 Aligned_cols=99 Identities=13% Similarity=-0.035 Sum_probs=78.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHH
Q 040367 94 IKGLCAESRIMEAAALFTKLRVFG---CEP----NVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKE 166 (400)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~ 166 (400)
+..+.+.|++++|+.++++..+.. +.| ...+++.+..+|...|++++|+.++ +++++
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~----------------~~~L~ 357 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYG----------------TRTME 357 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHH----------------HHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHH----------------HHHHH
Confidence 445667899999999999988642 222 2567899999999999999999985 45666
Q ss_pred HHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 167 LFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMD 208 (400)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 208 (400)
+++.......+....+++.|...|...|++++|..++++..+
T Consensus 358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 777776655455567889999999999999999999998764
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.51 E-value=0.0011 Score=57.11 Aligned_cols=114 Identities=9% Similarity=-0.085 Sum_probs=81.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcC---CCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHH
Q 040367 58 LINCFCKMGRVSHGFVVLGRILRSC---FTP----NAVTFTSLIKGLCAESRIMEAAALFTKLRVF-----G-CEP-NVF 123 (400)
Q Consensus 58 l~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~ 123 (400)
.+..+...|++++|+.++++.+... +.| ...+++.++.+|...|++++|+.++++..+. | -.| ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3455667899999999999998642 122 2357889999999999999999999987753 2 122 356
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHH
Q 040367 124 TYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVI 187 (400)
Q Consensus 124 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 187 (400)
+++.|...|...|++++|..++ ++|++++......+.+....+++.|-
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~----------------~~Al~i~~~~lG~~Hp~~~~~~~~l~ 420 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNL----------------RLAFDIMRVTHGREHSLIEDLILLLE 420 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH----------------HHHHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHH----------------HHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 7899999999999999999885 55667777665544332333334333
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.49 E-value=0.0013 Score=46.74 Aligned_cols=79 Identities=11% Similarity=0.033 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHhhC---cHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCcHHHHHHH
Q 040367 303 GALSLYGEMLSKGIKPDVVIYNTLFVVLFEIH---QVERAFKLFDEMQRDGVAA--DTWTYRTFIDGLCKNSYIVEAVEL 377 (400)
Q Consensus 303 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 377 (400)
.+.+-|.+....+. ++..+...+.+++++.+ +.++++.+|++..+.. .| +...+-.+.-+|.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 33444444444332 34444445555555544 4445555555555542 12 234444455555555555555555
Q ss_pred HHHHHH
Q 040367 378 FRTLRI 383 (400)
Q Consensus 378 ~~~~~~ 383 (400)
++.+++
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555555
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.49 E-value=0.0039 Score=51.71 Aligned_cols=134 Identities=7% Similarity=-0.082 Sum_probs=91.0
Q ss_pred CChhhHHHHHHHHhc--c---CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---C-Ch-hhH---HHHHHHHHh-
Q 040367 15 PPVCSFNILFGCLAK--N---KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM---G-RV-SHG---FVVLGRILR- 80 (400)
Q Consensus 15 ~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~-~~-~~a---~~~~~~~~~- 80 (400)
.+..+|...+++... . .+..+|+.+|++..+.. |.....|..+.-++... + .. ... ...++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 588899988876543 2 34578999999999874 22455665544444311 1 11 111 112222111
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 040367 81 SCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASG 151 (400)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (400)
...+.+..++..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|...|++....
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 1225577788888777788899999999999999985 78888888899999999988887777766553
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.47 E-value=0.00031 Score=60.55 Aligned_cols=85 Identities=8% Similarity=-0.026 Sum_probs=58.8
Q ss_pred cchHHHHHHHHHHHhC-------CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHHHHH
Q 040367 159 GFVDKAKELFLQMKDE-------NINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQ-----G--VQPNVVTFNVIMDE 224 (400)
Q Consensus 159 ~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~ 224 (400)
|++++|+.++++..+. ..+....+++.+..+|...|++++|+.++++.++. | .+....+++.+...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4566666666665431 11223467888888999999999999988887642 2 12234567788888
Q ss_pred HHhCCChHHHHHHHHHHHH
Q 040367 225 LCKNGKMDEASRLLDLMIQ 243 (400)
Q Consensus 225 ~~~~~~~~~a~~~~~~~~~ 243 (400)
|...|++++|..+++++.+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 8888888888888887765
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.37 E-value=0.00089 Score=44.21 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=29.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCchh-hHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 293 NGYCKNKEIEGALSLYGEMLSKGIKPDVV-IYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
..+...|++++|.+.++++.+.... +.. .+..+..++...|++++|.+.|+++.+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444555555555555555554211 333 4555555555555555555555555554
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.36 E-value=0.00093 Score=44.12 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=34.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040367 257 MDGFCLTGRVNRAKELFVSMESMGCTHTVF-SYSILINGYCKNKEIEGALSLYGEMLSK 314 (400)
Q Consensus 257 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 314 (400)
...+...|++++|...++++.+.. +.+.. .+..+..++...|++++|.+.|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344556666666666666666554 33445 5666666666666666666666666654
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.18 E-value=0.0045 Score=40.24 Aligned_cols=65 Identities=9% Similarity=0.058 Sum_probs=30.7
Q ss_pred CHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040367 249 NAFVYNTLMDGFCLTGR---VNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSK 314 (400)
Q Consensus 249 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 314 (400)
++..+..+..++...++ .++|...+++..+.+ +.++.....+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33444444444433322 355555555555443 334444444555555555555555555555543
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.15 E-value=0.0043 Score=41.41 Aligned_cols=67 Identities=10% Similarity=0.002 Sum_probs=49.4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 283 HTVFSYSILINGYCKNKEIEGALSLYGEMLSKG------IKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 283 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
.+..-+..|...+.+.|+++.|...++.+.+.- -.+....+..+..++.+.|+++.|...++++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345556678888888888888888888777631 1234567777888888888888888888888775
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.15 E-value=0.086 Score=49.87 Aligned_cols=167 Identities=11% Similarity=0.065 Sum_probs=99.8
Q ss_pred HHHHhccCChhHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 040367 24 FGCLAKNKHYDTVLS-LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESR 102 (400)
Q Consensus 24 ~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (400)
.......+++++|.+ ++..+ |+......++..+.+.|.++.|+++.+.. . .-.......|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~----~~f~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ--------D----QKFELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH--------H----HHHHHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc--------c----hheehhhhcCC
Confidence 344456788888876 44211 21333477788888899999988766321 1 11344567899
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHh
Q 040367 103 IMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVT 182 (400)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (400)
++.|.++.+. ..+...|..+...+.+.++++.|.+.|.++.. ++.+..++.... +...
T Consensus 668 ~~~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~------~~~~ 725 (814)
T 3mkq_A 668 LTLARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFN------NKEG 725 (814)
T ss_dssp HHHHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTT------CHHH
T ss_pred HHHHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcC------CHHH
Confidence 9999998654 34788999999999999999888888887632 444444443311 2333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 040367 183 YTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLD 239 (400)
Q Consensus 183 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 239 (400)
...+.......|+++.|...+.+.-+ +...+..|.+.+++++|..+-+
T Consensus 726 ~~~~~~~a~~~~~~~~A~~~~~~~g~---------~~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 726 LVTLAKDAETTGKFNLAFNAYWIAGD---------IQGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHcCC---------HHHHHHHHHHcCChHHHHHHHH
Confidence 44444455555555555544433211 2334444555555555544433
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.11 E-value=0.071 Score=42.48 Aligned_cols=90 Identities=11% Similarity=-0.044 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhh-CcH
Q 040367 266 VNRAKELFVSMESMGCTHT---VFSYSILINGYCKN-----KEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEI-HQV 336 (400)
Q Consensus 266 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 336 (400)
...|...+++..+.+ |+ ...|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 567777778877764 44 55788888888884 88899999999888865432466667777777774 888
Q ss_pred HHHHHHHHHHHHcCCC--CCHHH
Q 040367 337 ERAFKLFDEMQRDGVA--ADTWT 357 (400)
Q Consensus 337 ~~a~~~~~~~~~~~~~--~~~~~ 357 (400)
+++.+.+++.+..... |+...
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~l 279 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKL 279 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhH
Confidence 8999999888887555 55443
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.08 E-value=0.017 Score=54.77 Aligned_cols=45 Identities=11% Similarity=0.184 Sum_probs=23.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 040367 261 CLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEM 311 (400)
Q Consensus 261 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 311 (400)
...|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3455555555553322 23445555555555555555555555544
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.07 E-value=0.016 Score=37.55 Aligned_cols=68 Identities=10% Similarity=0.007 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 040367 49 FPDLYTYNILINCFCKMGR---VSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFG 117 (400)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 117 (400)
+++...+..+..++...++ .++|..++++.++.+ +.+......+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4456666666666654443 567777777777664 3356666666677777777777777777777653
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.06 E-value=0.079 Score=42.24 Aligned_cols=94 Identities=18% Similarity=0.166 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhCCCCCc---hhhHHHHHHHHHhh-----CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CcH
Q 040367 301 IEGALSLYGEMLSKGIKPD---VVIYNTLFVVLFEI-----HQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKN-SYI 371 (400)
Q Consensus 301 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 371 (400)
...|...+++.++. .|+ ...|..+...|... |+.++|.+.|++.++.+..-+..++..+...++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 56788888888876 344 56888899889884 99999999999999964322478888888888884 999
Q ss_pred HHHHHHHHHHHHhccc--chhHHHHHH
Q 040367 372 VEAVELFRTLRILKCE--LDIRAYNCL 396 (400)
Q Consensus 372 ~~a~~~~~~~~~~~~~--p~~~~~~~l 396 (400)
+++.+.+++.+..... |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999999987666 666655543
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.95 E-value=0.015 Score=38.71 Aligned_cols=63 Identities=8% Similarity=0.034 Sum_probs=27.3
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 040367 18 CSFNILFGCLAKNKHYDTVLSLFKRLNSTG------LFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 80 (400)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 80 (400)
..+..+...+.+.|++..|...|+.+.+.. -.+....+..+..++.+.|+++.|...++++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344444555555555555555555443320 011233344444444444444444444444443
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.93 E-value=0.015 Score=41.36 Aligned_cols=82 Identities=15% Similarity=0.067 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhhHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCCHHHHH
Q 040367 33 YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG---RVSHGFVVLGRILRSCFTP--NAVTFTSLIKGLCAESRIMEAA 107 (400)
Q Consensus 33 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~ 107 (400)
...+.+-|++....| +++..+...+..++++.+ +.++++.+++.+.+.+ .| +...+-.+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 344455555555544 356666666666666666 4456666666666653 12 2344444555566666666666
Q ss_pred HHHHHHHHc
Q 040367 108 ALFTKLRVF 116 (400)
Q Consensus 108 ~~~~~~~~~ 116 (400)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666665
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.91 E-value=0.01 Score=40.58 Aligned_cols=88 Identities=11% Similarity=-0.000 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHH---HHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCcHHHHH
Q 040367 300 EIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVER---AFKLFDEMQRDGVA-ADTWTYRTFIDGLCKNSYIVEAV 375 (400)
Q Consensus 300 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~ 375 (400)
....+.+-|.+....|. ++..+--.+.+++.+..+... ++.+++...+.+.+ -.....-.|.-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444444444443332 344444455555555554443 55666655554211 12334445555666666666666
Q ss_pred HHHHHHHHhcccchh
Q 040367 376 ELFRTLRILKCELDI 390 (400)
Q Consensus 376 ~~~~~~~~~~~~p~~ 390 (400)
+.++.+++ ++|+.
T Consensus 95 ~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 95 KYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHH--hCCCC
Confidence 66666665 34543
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.82 E-value=0.029 Score=39.41 Aligned_cols=102 Identities=9% Similarity=-0.034 Sum_probs=56.8
Q ss_pred CHHhHHHHHHHHHhcCCH------HHHHHHHHHHHhcCCCCCh-hhHHHHHHH------HHhcCCHHHHHHHHHHHHhCC
Q 040367 249 NAFVYNTLMDGFCLTGRV------NRAKELFVSMESMGCTHTV-FSYSILING------YCKNKEIEGALSLYGEMLSKG 315 (400)
Q Consensus 249 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~-~~~~~l~~~------~~~~~~~~~a~~~~~~~~~~~ 315 (400)
|..++-..+....+.|++ ++.+++|++....- +|+. ..|...+.. +...+++++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 556666666666666776 66667777666543 3332 222222221 123456666666666665542
Q ss_pred CCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCC
Q 040367 316 IKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVA 352 (400)
Q Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 352 (400)
-.. ...|....+.-.+.|+.+.|.+++.+.+..+..
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 222 455555555556667777777777666665443
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.085 Score=38.56 Aligned_cols=130 Identities=12% Similarity=0.143 Sum_probs=95.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 040367 222 MDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEI 301 (400)
Q Consensus 222 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 301 (400)
.......|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+... +..+.-.|...|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34567789999999998765 3788999999999999999999999998763 45666667778998
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 040367 302 EGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTL 381 (400)
Q Consensus 302 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 381 (400)
++-.++-+.....| -++.....+...|+++++.++|.+.- ..|.... .....|-.+.|.++.+++
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~---r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG---SLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT---CHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC---ChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 88877777666554 24555666778999999999986543 2222111 122357778888887766
No 230
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.78 E-value=0.0014 Score=55.84 Aligned_cols=210 Identities=10% Similarity=0.073 Sum_probs=131.6
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 040367 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLI 94 (400)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (400)
.|+..|..++.+..+.|.+++-+..+...++..- ++..=+.|+-+|++.++..+..+++ . .||..-...+.
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl----~---~~N~A~iq~VG 151 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVG 151 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTT----S---CCSSSCTHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHH----c---CCCcccHHHHH
Confidence 4566777777777778888777777766555422 3333456777777777766543322 1 24444455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC--------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC--
Q 040367 95 KGLCAESRIMEAAALFTKLRVFG--------------------CEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGN-- 152 (400)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 152 (400)
+-|...|.++.|.-+|..+.... -.-++.||-.+-.+|...+++.-|...--.+.-..
T Consensus 152 Drcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade 231 (624)
T 3lvg_A 152 DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE 231 (624)
T ss_dssp HHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC
T ss_pred HHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH
Confidence 66666666666655554432210 13467889999999999999888777655555443
Q ss_pred -----CCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC------CHHHHHH
Q 040367 153 -----GEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQ-GVQP------NVVTFNV 220 (400)
Q Consensus 153 -----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~ 220 (400)
..|...|.+++.+.+++...... ......|+-|.-.|++- ++++..+.++....+ +++- ....|.-
T Consensus 232 L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~E 309 (624)
T 3lvg_A 232 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 309 (624)
T ss_dssp CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHH
Confidence 23555888999999998877532 45667777777666654 566666655543322 2211 2345666
Q ss_pred HHHHHHhCCChHHHH
Q 040367 221 IMDELCKNGKMDEAS 235 (400)
Q Consensus 221 l~~~~~~~~~~~~a~ 235 (400)
++-.|.+-.+++.|.
T Consensus 310 lvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 310 LVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHTCHHHHH
T ss_pred HHHHHhcchhHHHHH
Confidence 777777777776654
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.76 E-value=0.032 Score=39.21 Aligned_cols=113 Identities=11% Similarity=0.074 Sum_probs=77.0
Q ss_pred CCCHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHcCCCCCH-HhHHHHHHH------HHhcCCHHHHHHHHHHHHh
Q 040367 212 QPNVVTFNVIMDELCKNGKM------DEASRLLDLMIQIGVRPNA-FVYNTLMDG------FCLTGRVNRAKELFVSMES 278 (400)
Q Consensus 212 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~-~~~~~l~~~------~~~~~~~~~a~~~~~~~~~ 278 (400)
+-|..+|-..+....+.|+. ++..++|+++... ++|+. ..+...+.. +...+|.++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45777888888888877888 8888888888775 45542 122222222 2344788888999988876
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 040367 279 MGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLF 327 (400)
Q Consensus 279 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 327 (400)
.. +.-...|-...+.-.+.|+...|.+++...+..+.+|. ..+...+
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~ 135 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIAL 135 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHH
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHH
Confidence 53 33366777777777788999999999998888776643 3334333
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.094 Score=38.32 Aligned_cols=130 Identities=13% Similarity=0.125 Sum_probs=94.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 040367 187 IRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRV 266 (400)
Q Consensus 187 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 266 (400)
.......|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|...|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34556899999999998765 4788999999999999999999999987642 45666677888998
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHH
Q 040367 267 NRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEM 346 (400)
Q Consensus 267 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 346 (400)
+....+-+.....| . ++.....+...|+++++.+++.+.-+ -|.. .......|-.+.|.++.+++
T Consensus 77 e~L~kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 88777666665544 2 56666677789999999999865432 1111 11122367778888887765
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.57 E-value=0.096 Score=36.02 Aligned_cols=139 Identities=12% Similarity=0.016 Sum_probs=66.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 040367 191 CYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAK 270 (400)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 270 (400)
.-.|..++..++..+..... +..-+|.++--....-+-+-..++++.+-+. .|. ..+|+.....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 34566666666666665532 3444444444333333444444444443221 111 1233444433
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcC
Q 040367 271 ELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDG 350 (400)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 350 (400)
..+-.+- .+.......+......|+-++-.+++..+.. +.+|++...-.+..+|.+.|+..+|.+++.++-+.|
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3333221 2333344455555555555555555555433 234455555555556666666666666666555555
Q ss_pred C
Q 040367 351 V 351 (400)
Q Consensus 351 ~ 351 (400)
+
T Consensus 156 ~ 156 (172)
T 1wy6_A 156 E 156 (172)
T ss_dssp C
T ss_pred h
Confidence 4
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.18 E-value=1.3e-05 Score=67.73 Aligned_cols=262 Identities=13% Similarity=0.120 Sum_probs=181.7
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 040367 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIK 95 (400)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (400)
.+..|..|..+..+.+...+|++-|-+. .|+..|..++.+..+.|.+++-...+....+.. .++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 5668999999999999999998876322 255678999999999999999999998877663 34445568999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC---CCCCcccchHHHHHHHHHHH
Q 040367 96 GLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGN---GEFGVEGFVDKAKELFLQMK 172 (400)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~ 172 (400)
+|++.++..+-.+.+. .|+..-...+..-|...|.++.|.-+|..+..-. ......|.++.|.+.-+
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaAr--- 194 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGAR--- 194 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTT---
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH---
Confidence 9999999777655442 5777778889999999999988887777664322 22223555555544321
Q ss_pred hCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHh
Q 040367 173 DENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFV 252 (400)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 252 (400)
+ ..++.||..+-.+|...+++.-|.-.--.++-. +| ....++..|-..|.+++.+.+++..... -......
T Consensus 195 K---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGm 265 (624)
T 3lvg_A 195 K---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGM 265 (624)
T ss_dssp T---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHH
T ss_pred h---cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHH
Confidence 2 236779999999999999988776655444422 11 1234566788889999999988887753 2456778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCC------ChhhHHHHHHHHHhcCCHHHHH
Q 040367 253 YNTLMDGFCLTGRVNRAKELFVSMES-MGCTH------TVFSYSILINGYCKNKEIEGAL 305 (400)
Q Consensus 253 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~l~~~~~~~~~~~~a~ 305 (400)
|+-|.-.|++- ++++..+.++..-. .+++. ....|..++-.|.+-.+++.|.
T Consensus 266 FTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 266 FTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 88888777764 55555554443321 22221 3445777777777777777654
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.05 E-value=0.049 Score=37.21 Aligned_cols=85 Identities=14% Similarity=0.041 Sum_probs=46.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhh---HHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCCHH
Q 040367 30 NKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH---GFVVLGRILRSCFTP--NAVTFTSLIKGLCAESRIM 104 (400)
Q Consensus 30 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 104 (400)
......+.+-|......| .++..+-..+..++++..+... ++.+++.+.+.+ .| .....-.|.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 334444555555554444 2566665666666666655444 666666666543 12 2333344445566666666
Q ss_pred HHHHHHHHHHHc
Q 040367 105 EAAALFTKLRVF 116 (400)
Q Consensus 105 ~a~~~~~~~~~~ 116 (400)
+|.+.++.+.+.
T Consensus 92 ~A~~~~~~lL~~ 103 (126)
T 1nzn_A 92 KALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666666655
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.92 E-value=0.24 Score=34.15 Aligned_cols=137 Identities=12% Similarity=0.076 Sum_probs=69.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCC
Q 040367 100 ESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPD 179 (400)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 179 (400)
.|..++..++..+.... .+..-+|-+|--....-+-+...++++.+-+ ..+.+..|....+...+-.+- .+
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk-iFDis~C~NlKrVi~C~~~~n-----~~ 90 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS-YFDLDKCQNLKSVVECGVINN-----TL 90 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG-GSCGGGCSCTHHHHHHHHHTT-----CC
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh-hcCcHhhhcHHHHHHHHHHhc-----ch
Confidence 45555555555555542 2334444444444444443333333333311 112222233333333332221 13
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 040367 180 VVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGV 246 (400)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 246 (400)
.......+......|.-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++-+.|.
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 445566666666777777776666665432 356666666677777777777777777777766654
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.1 Score=48.08 Aligned_cols=127 Identities=12% Similarity=0.072 Sum_probs=75.7
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCChhh-H-HHHHHHHHhcC-CHHHHHHHHHHHHhC------CCCC-c--
Q 040367 253 YNTLMDGFCLTGR-VNRAKELFVSMESMGCTHTVFS-Y-SILINGYCKNK-EIEGALSLYGEMLSK------GIKP-D-- 319 (400)
Q Consensus 253 ~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~-~-~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~-- 319 (400)
...++..+...++ .+.|..+++++.... |.... + ..++..+...+ +--+|.+++.+.++. ..++ +
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 3445555555555 467888888877763 32222 2 22222222222 222345544444321 1111 1
Q ss_pred --------hhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 040367 320 --------VVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLR 382 (400)
Q Consensus 320 --------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 382 (400)
......-...|...|+++.|+++-+++... .+.+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 112222345566789999999999988876 34468899999999999999999998888874
No 238
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.71 E-value=0.24 Score=34.06 Aligned_cols=71 Identities=11% Similarity=-0.026 Sum_probs=36.2
Q ss_pred CchhhHHHHHHHHHhhCc---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchh
Q 040367 318 PDVVIYNTLFVVLFEIHQ---VERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDI 390 (400)
Q Consensus 318 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 390 (400)
|+..+--.+.+++.+..+ ..+++.+++++.+.+..-....+-.|.-++.+.|++++|.+..+.+++ ++|+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 344444444445544433 334556666555543212344455555566666666666666666655 34544
No 239
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.66 E-value=1.4 Score=43.56 Aligned_cols=211 Identities=12% Similarity=0.122 Sum_probs=124.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc-ccchHHHHHHHHH
Q 040367 92 SLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGV-EGFVDKAKELFLQ 170 (400)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~ 170 (400)
.++..+...+.++-+.++..-. +.+...-..+..++...|++++|...|++....-..... ...... +..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~----~~~ 887 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLRE----FQE 887 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHH----HHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcc----ccc
Confidence 3445555666666555543221 345555567888999999999999999886433211111 111111 112
Q ss_pred HHhCC--CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 040367 171 MKDEN--INPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNV----VTFNVIMDELCKNGKMDEASRLLDLMIQI 244 (400)
Q Consensus 171 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 244 (400)
+.... ...-..-|.-++..+.+.+.++.+.+.-+..++...+.+. ..|..+.+.+...|++++|...+-.+...
T Consensus 888 ~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 888 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred ccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 22211 1122345777888999999999999988887764322222 26788899999999999999999887664
Q ss_pred CCCCCHHhHHHHHHHHHhcCCH------------HHHHHHHHHHHh-c-CCCCChhhHHHHHHHHHhcCCHHHHHH-HHH
Q 040367 245 GVRPNAFVYNTLMDGFCLTGRV------------NRAKELFVSMES-M-GCTHTVFSYSILINGYCKNKEIEGALS-LYG 309 (400)
Q Consensus 245 ~~~~~~~~~~~l~~~~~~~~~~------------~~a~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~ 309 (400)
.. -...+..|+...+..|.. ++..+++..-.+ . .....+.-|..|-..+...|++.+|-. +|+
T Consensus 968 ~~--r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe 1045 (1139)
T 4fhn_B 968 PL--KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYE 1045 (1139)
T ss_dssp SS--CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHH
Confidence 33 345666777766666553 444444433221 1 111112235555555666777665544 445
Q ss_pred HHHh
Q 040367 310 EMLS 313 (400)
Q Consensus 310 ~~~~ 313 (400)
.+.+
T Consensus 1046 ~~~R 1049 (1139)
T 4fhn_B 1046 KLSR 1049 (1139)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.41 E-value=0.11 Score=44.26 Aligned_cols=55 Identities=5% Similarity=0.038 Sum_probs=27.2
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 040367 326 LFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTL 381 (400)
Q Consensus 326 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 381 (400)
++..+...|++++++..+..+... -+.+...+..++.++.+.|+..+|++.|+++
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444455555555555554443 1224445555555555555555555555554
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.22 E-value=0.48 Score=33.02 Aligned_cols=71 Identities=11% Similarity=-0.026 Sum_probs=38.7
Q ss_pred CchhhHHHHHHHHHhhCc---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccchh
Q 040367 318 PDVVIYNTLFVVLFEIHQ---VERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCELDI 390 (400)
Q Consensus 318 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 390 (400)
|+..+--.+.+++.+..+ ..+++.+++.+.+.+..-.....-.|.-++.+.|++++|.+..+.+++ ++|+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 444444445555554443 335666666665543222344445555666666666666666666665 45544
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.17 E-value=1.3 Score=37.61 Aligned_cols=71 Identities=7% Similarity=0.015 Sum_probs=50.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH-----cCCCCCHHhH
Q 040367 182 TYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQ-----IGVRPNAFVY 253 (400)
Q Consensus 182 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 253 (400)
+...++..+...|++++++..+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34456667777888888887777777653 55777788888888888888888888777644 3777776543
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.12 E-value=1.5 Score=38.03 Aligned_cols=187 Identities=11% Similarity=0.149 Sum_probs=110.8
Q ss_pred hHHHHHHHHHHHh-----CCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHhCCCh
Q 040367 161 VDKAKELFLQMKD-----ENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMD----ELCKNGKM 231 (400)
Q Consensus 161 ~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~ 231 (400)
++.|++.+..+.+ .+..........++..|...|+|+...+.+..+.+..-.. ......+++ ........
T Consensus 32 ~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~~~ 110 (445)
T 4b4t_P 32 CNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSKSL 110 (445)
T ss_dssp HHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCch
Confidence 4455544444332 2334556778889999999999999988887765432121 222223333 22223332
Q ss_pred HHHH--HHHHHHHHc--C-CCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHhc
Q 040367 232 DEAS--RLLDLMIQI--G-VRP---NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHT-----VFSYSILINGYCKN 298 (400)
Q Consensus 232 ~~a~--~~~~~~~~~--~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~ 298 (400)
+... .+.+..... | +.. .......|...+...|++.+|..++..+...-...+ ...+...++.|...
T Consensus 111 d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~ 190 (445)
T 4b4t_P 111 DLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILK 190 (445)
T ss_dssp HHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHC
Confidence 2211 111111000 1 111 123345678889999999999999999864211111 34566778889999
Q ss_pred CCHHHHHHHHHHHHh----CCCCCc--hhhHHHHHHHHHhhCcHHHHHHHHHHHHH
Q 040367 299 KEIEGALSLYGEMLS----KGIKPD--VVIYNTLFVVLFEIHQVERAFKLFDEMQR 348 (400)
Q Consensus 299 ~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 348 (400)
+++.+|..+++++.. ....|+ ...+...+..+...+++.+|...|.++..
T Consensus 191 ~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 191 GDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999998887643 222222 23456667777888999988888877654
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.18 E-value=4 Score=38.80 Aligned_cols=171 Identities=11% Similarity=0.035 Sum_probs=100.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhCCChHHHHHHHHHHHHcCCCCCHHh--HHHHHHHHH
Q 040367 186 VIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMD--ELCKNGKMDEASRLLDLMIQIGVRPNAFV--YNTLMDGFC 261 (400)
Q Consensus 186 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 261 (400)
+...+.-.|+.+....++..+.+.. +..+...+.. ++...|+.+.+..+.+.+... ..|.... ..++.-+|+
T Consensus 496 LGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAya 571 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYA 571 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTT
T ss_pred HhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhc
Confidence 3445567788888888887776532 3333333333 444778989888888888764 1222221 123455778
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcH-HHHH
Q 040367 262 LTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQV-ERAF 340 (400)
Q Consensus 262 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~ 340 (400)
..|+......++..+.... ..+......+.-++...|+.+.+.+++..+.+.+ .|....-..+..+....|.. .+++
T Consensus 572 GTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~ai 649 (963)
T 4ady_A 572 GTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAI 649 (963)
T ss_dssp TSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHH
T ss_pred CCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHH
Confidence 8899877777888887642 2334444444445556777777777777666653 34444333333344434443 6788
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH
Q 040367 341 KLFDEMQRDGVAADTWTYRTFIDGL 365 (400)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (400)
+.+..+... ++..+-...+.++
T Consensus 650 d~L~~L~~D---~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 650 DVLDPLTKD---PVDFVRQAAMIAL 671 (963)
T ss_dssp HHHHHHHTC---SSHHHHHHHHHHH
T ss_pred HHHHHHccC---CCHHHHHHHHHHH
Confidence 888888753 4555444444333
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.17 E-value=2.6 Score=41.60 Aligned_cols=205 Identities=12% Similarity=0.079 Sum_probs=107.7
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh--------------------
Q 040367 21 NILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR-------------------- 80 (400)
Q Consensus 21 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------------- 80 (400)
..++..+.+.+.++.+.++..... .+....-.+..++...|++++|.+.|++...
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 345666666777766666544332 2333334555667777777777777755310
Q ss_pred cC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHcCCCC
Q 040367 81 SC--FTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNV----FTYNTLINGLYRTGHTIVALNLFEEMASGNGE 154 (400)
Q Consensus 81 ~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 154 (400)
.. ...-..-|..++..+-+.+.++.+.+.-....+...+.+. ..|..+...+...|++++|...+-.+......
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 00 1222345667777777777777777776666554312121 25677777888888888887777766543221
Q ss_pred CCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhCCChH
Q 040367 155 FGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQ--GVQPNVVTFNVIMDELCKNGKMD 232 (400)
Q Consensus 155 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 232 (400)
.+-..++...|.+.+ ....|+. +--.|..++..+++..-.+. .....+.-|..|-.-+...|++.
T Consensus 971 ------~~cLr~LV~~lce~~------~~~~L~~-lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR 1037 (1139)
T 4fhn_B 971 ------KSCLLDFVNQLTKQG------KINQLLN-YSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYR 1037 (1139)
T ss_dssp ------HHHHHHHHHHHHHHC------CHHHHHH-HTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTS
T ss_pred ------HHHHHHHHHHHHhCC------ChhhhhC-CCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChH
Confidence 233334444555443 1222222 22355666666665443221 01111223444444445556655
Q ss_pred HH-HHHHHHHHH
Q 040367 233 EA-SRLLDLMIQ 243 (400)
Q Consensus 233 ~a-~~~~~~~~~ 243 (400)
.| .-+|+++.+
T Consensus 1038 ~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 1038 DAAAIIYEKLSR 1049 (1139)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 44 344454443
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.01 E-value=2.8 Score=36.34 Aligned_cols=189 Identities=11% Similarity=0.062 Sum_probs=120.3
Q ss_pred CCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH----HhcC
Q 040367 194 NDWNEAKCLLIEMMD-----QGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGF----CLTG 264 (400)
Q Consensus 194 ~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~ 264 (400)
|+++.|++.+..+.+ .+..........++..|...|+++...+.+..+.+..... ......++..+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 677888887766553 2345567778889999999999999988887766543232 22233344332 2233
Q ss_pred CHHH--HHHHHHHHHh--cC-CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCc---hhhHHHHHHHHH
Q 040367 265 RVNR--AKELFVSMES--MG-CTH---TVFSYSILINGYCKNKEIEGALSLYGEMLSK--GIKPD---VVIYNTLFVVLF 331 (400)
Q Consensus 265 ~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~ 331 (400)
..+. -..+...+.. .| +.. .......|...+...|++.+|.+++..+... +.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 3222 1122222111 11 111 1233467888999999999999999988753 22212 245666778899
Q ss_pred hhCcHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 040367 332 EIHQVERAFKLFDEMQRD----GVAAD--TWTYRTFIDGLCKNSYIVEAVELFRTLRI 383 (400)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 383 (400)
..+++.+|..+++++... ...|+ ...+...+..+...+++.+|.+.|.++.+
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999987532 12222 23556677777888999999988888863
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.00 E-value=3.8 Score=37.97 Aligned_cols=54 Identities=9% Similarity=0.002 Sum_probs=47.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 040367 187 IRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLM 241 (400)
Q Consensus 187 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 241 (400)
...|...|+++-|+++-++.... .+.+-.+|..|..+|...|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34567789999999999999886 3556789999999999999999999998876
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.48 E-value=0.95 Score=29.26 Aligned_cols=63 Identities=8% Similarity=0.141 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040367 300 EIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFID 363 (400)
Q Consensus 300 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 363 (400)
+.=+..+-++.+....+.|++....+.+++|.+.+++..|+++|+..+.+ ..+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 34455666666666677777777777777777777777777777776654 2333445555543
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.05 E-value=1.1 Score=28.91 Aligned_cols=47 Identities=6% Similarity=0.109 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 232 DEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 278 (400)
Q Consensus 232 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 278 (400)
-+..+-++.+....+.|++.+..+.+.+|.+.+++.-|.++++.++.
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444444444445555555555555555555555555555555544
No 250
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.26 E-value=1.9 Score=29.60 Aligned_cols=59 Identities=8% Similarity=0.159 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 040367 303 GALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFI 362 (400)
Q Consensus 303 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 362 (400)
+..+-++.+....+.|++......+++|.+.+++..|+++|+-.+.+ ..+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34444455555556666666666666666666666666666665544 233344454444
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.44 E-value=1.4 Score=31.62 Aligned_cols=63 Identities=10% Similarity=-0.086 Sum_probs=41.8
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHhCC-CCCC-------HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 040367 18 CSFNILFGCLAKNKHYDTVLSLFKRLNSTG-LFPD-------LYTYNILINCFCKMGRVSHGFVVLGRILR 80 (400)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 80 (400)
.++-.-+..+...|.++.|+-+.+.+.... ..|+ ..++..+.+++...|++..|...|++.++
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344455677778888888888777754321 1223 12456667788888888888888888654
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.32 E-value=2.1 Score=30.84 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=64.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC-------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCCH
Q 040367 181 VTYTSVIRGFCYANDWNEAKCLLIEMMDQG-VQPN-------VVTFNVIMDELCKNGKMDEASRLLDLMIQIG--VRPNA 250 (400)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~ 250 (400)
.++..-+..+...|.++.|+-+.+.+.... ..|+ ..++..+.+++...|++..|...|++.++.. +.-+.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345555677788888888888887765321 1222 1355667778888899999999988875531 11111
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040367 251 FVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLS 313 (400)
Q Consensus 251 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 313 (400)
.....+. ....... ......+...--.+..+|.+.+++++|+.+++.+..
T Consensus 101 s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 101 KVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred Ccccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 1111110 0000000 001122333444567777778888888877766543
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.32 E-value=2.5 Score=29.04 Aligned_cols=62 Identities=8% Similarity=0.097 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 040367 231 MDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILIN 293 (400)
Q Consensus 231 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 293 (400)
.-+..+-++.+....+.|++.+..+.+.+|.+.+|+.-|.++|+-++.+- .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 34455556666666667777777777777777777777777777766543 333445555543
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.68 E-value=7 Score=33.05 Aligned_cols=56 Identities=11% Similarity=0.052 Sum_probs=24.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHc--CCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 040367 221 IMDELCKNGKMDEASRLLDLMIQI--GVRPN---AFVYNTLMDGFCLTGRVNRAKELFVSM 276 (400)
Q Consensus 221 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~ 276 (400)
++..|...|++.+|.+++.++.+. ..... ..++..-+..|...+++.++...+...
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 444455555555555555544442 11100 122333344444555555555555444
No 255
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.20 E-value=3.3 Score=28.50 Aligned_cols=48 Identities=13% Similarity=0.081 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 040367 105 EAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGN 152 (400)
Q Consensus 105 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 152 (400)
+++.+++.+.+.+.......+..|.-++.+.|++++|.++.+.+.+..
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 455555555544311123444445555555555555555555554443
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.12 E-value=3.7 Score=35.34 Aligned_cols=61 Identities=8% Similarity=-0.183 Sum_probs=32.1
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 040367 19 SFNILFGCLAKNKHYDTVLSLFKRLNST--GLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 79 (400)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 79 (400)
++..+...+.+.|+++.|.+.|.++... +...-...+-.+++.+...+++..+...++++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3445555555666666666666555432 112223445555555555566665555555543
No 257
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.09 E-value=11 Score=34.26 Aligned_cols=163 Identities=10% Similarity=0.006 Sum_probs=85.9
Q ss_pred HhccCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 040367 27 LAKNKHYDTVLSLFKRLNSTGLFPDL-YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIME 105 (400)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 105 (400)
..+.|++..+..+...+... +... ..|..+...+ ......+...++++-.. .+.....-+..+..+.+.+++..
T Consensus 16 a~~~~~~~~~~~l~~~l~~~--pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~--~p~~~~Lr~~~l~~l~~~~~w~~ 90 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDY--PLYPYLEYRQITDDL-MNQPAVTVTNFVRANPT--LPPARTLQSRFVNELARREDWRG 90 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTS--TTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHhhcCC--CcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHhCCCHHH
Confidence 34568887777776655332 2211 1222222111 11234444444333221 12222333445566667777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHH
Q 040367 106 AAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTS 185 (400)
Q Consensus 106 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 185 (400)
....+.. .+.+...-.....+....|+..+|....+.+-..+... .+..-.+|....+.|.-.+..++.-
T Consensus 91 ~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~-----p~~c~~l~~~~~~~g~lt~~~~~~R 160 (618)
T 1qsa_A 91 LLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQ-----PNACDKLFSVWRASGKQDPLAYLER 160 (618)
T ss_dssp HHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCC-----CTHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-----cHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 7765543 14466666677788888898888887777776554332 3455666776666553333334433
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 040367 186 VIRGFCYANDWNEAKCLLIE 205 (400)
Q Consensus 186 l~~~~~~~~~~~~a~~~~~~ 205 (400)
+ ......|+...|..+...
T Consensus 161 ~-~~al~~~~~~~a~~l~~~ 179 (618)
T 1qsa_A 161 I-RLAMKAGNTGLVTVLAGQ 179 (618)
T ss_dssp H-HHHHHTTCHHHHHHHHHT
T ss_pred H-HHHHHCCCHHHHHHHHHh
Confidence 3 455566666666555443
No 258
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.60 E-value=15 Score=35.13 Aligned_cols=179 Identities=13% Similarity=0.067 Sum_probs=98.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 040367 186 VIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFN--VIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT 263 (400)
Q Consensus 186 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 263 (400)
+.-++...|+.+.+..+++.+.... .|....-. .+.-+|+..|+.....+++..+.... ..+..-...+.-++...
T Consensus 530 lgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~ 607 (963)
T 4ady_A 530 VGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLL 607 (963)
T ss_dssp HHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTS
T ss_pred HHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhcc
Confidence 3334557889999998988887642 22222222 23335677889888888998888642 22333333333344456
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCchhhHHHHHHHHHh--hC------
Q 040367 264 GRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEI-EGALSLYGEMLSKGIKPDVVIYNTLFVVLFE--IH------ 334 (400)
Q Consensus 264 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~------ 334 (400)
|+.+.+.+++..+.+.+ .|....-..+..+....|+. .++...+..+... ++..+-...+.++.. .|
T Consensus 608 g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~ 683 (963)
T 4ady_A 608 RDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIALSMILIQQTEKLN 683 (963)
T ss_dssp SSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHSTTCCTTTC
T ss_pred CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHHHHHhcCCccccc
Confidence 77777778877776654 45555444555555555554 5788888888753 344443333333332 22
Q ss_pred -cHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCc
Q 040367 335 -QVERAFKLFDEMQRD-GVAADTWTYRTFIDGLCKNSY 370 (400)
Q Consensus 335 -~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 370 (400)
+....++.+...... .-.++...-..+..+....|.
T Consensus 684 ~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 684 PQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp TTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 233334433333332 122334444555556655553
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.91 E-value=2.5 Score=33.27 Aligned_cols=55 Identities=16% Similarity=0.116 Sum_probs=39.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 040367 294 GYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRD 349 (400)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 349 (400)
...+.|+++++++....-++..+ -|...-..+++.++-.|++++|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 45567778888877777777643 36666677777778888888888877777664
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.07 E-value=9.1 Score=32.93 Aligned_cols=61 Identities=13% Similarity=0.036 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040367 217 TFNVIMDELCKNGKMDEASRLLDLMIQI--GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 277 (400)
Q Consensus 217 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 277 (400)
+...+...|.+.|+++.|.+.+.++... +...-...+-..+..+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3445556666666666666666666553 122223445555556666666666666666554
No 261
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=88.06 E-value=6.7 Score=29.28 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=35.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-chhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCC
Q 040367 298 NKEIEGALSLYGEMLSKGIKP-DVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAA 353 (400)
Q Consensus 298 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 353 (400)
.++...+.++|..|..+|+-- -...|......+-..|++.+|.++|+..++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 334667777777777665432 23445566666667777777777777777766666
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.77 E-value=5.7 Score=31.29 Aligned_cols=57 Identities=12% Similarity=0.098 Sum_probs=45.6
Q ss_pred HHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 040367 24 FGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS 81 (400)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (400)
+..+.+.|++++|++....-.+.. |.|...-..+++.+|-.|++++|..-++...+.
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 345677888888888888877775 557788888888888889999888888887776
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.35 E-value=16 Score=30.01 Aligned_cols=195 Identities=12% Similarity=0.117 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 040367 33 YDTVLSLFKRLNSTGLF----PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAA 108 (400)
Q Consensus 33 ~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 108 (400)
+++.+.-++.-.+.|-- --..+|.++..-|.+.+++++|++++..-.. .+.+.|+...+.+
T Consensus 12 ~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~D 76 (336)
T 3lpz_A 12 IERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGD 76 (336)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHH
Confidence 44444555555544410 0123556666677788888888887654322 2334455444333
Q ss_pred ----HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHH
Q 040367 109 ----LFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYT 184 (400)
Q Consensus 109 ----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 184 (400)
+++.+.+.++++|......++..+......+-... ..+.+|++.=.+.. ....-|+....
T Consensus 77 L~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~---------------~fi~~ai~WS~~~g-~~~~Gdp~LH~ 140 (336)
T 3lpz_A 77 LAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRK---------------RFVKEMIDWSKKFG-DYPAGDPELHH 140 (336)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHH---------------HHHHHHHHHHHHHS-SCTTCCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHH---------------HHHHHHHHHHhhcC-CCCCCCHHHHH
Confidence 34555666777887777777777665543211111 01233333322211 11234666777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 040367 185 SVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG 264 (400)
Q Consensus 185 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 264 (400)
.+...|.+.+++.+|...|- . |..+++..+..++.-+...+...+ ++...-..++ -|...+
T Consensus 141 ~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL-~yL~l~ 201 (336)
T 3lpz_A 141 VVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVL-PYLLVA 201 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHH-HHHHTT
T ss_pred HHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHH-HHHHhC
Confidence 88889999999999888772 2 333344566555544444332111 1222222233 355677
Q ss_pred CHHHHHHHHHHHH
Q 040367 265 RVNRAKELFVSME 277 (400)
Q Consensus 265 ~~~~a~~~~~~~~ 277 (400)
+...|..++....
T Consensus 202 n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 202 NVRAANTAYRIFT 214 (336)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 8888877666554
No 264
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.23 E-value=6.4 Score=25.37 Aligned_cols=86 Identities=13% Similarity=0.108 Sum_probs=57.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 040367 30 NKHYDTVLSLFKRLNSTGLFPDLYTYNIL--INCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAA 107 (400)
Q Consensus 30 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 107 (400)
....++|..+-+.+...+ +. -...+ +..+...|++++|..+.+... .||...|.+|-. .+.|-.+++.
T Consensus 19 ~H~HqEA~tIAdwL~~~~---~~-E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le 88 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLG---QD-EAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALD 88 (115)
T ss_dssp TTCHHHHHHHHHHHHHTT---CH-HHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHH
T ss_pred chHHHHHHHHHHHHHhCC---cH-HHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHH
Confidence 446788888888887764 32 22333 355678888888887765543 678777776654 3778888888
Q ss_pred HHHHHHHHcCCCCCHHHHH
Q 040367 108 ALFTKLRVFGCEPNVFTYN 126 (400)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~ 126 (400)
..+.++-..| .|....|.
T Consensus 89 ~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 89 RRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHHH
Confidence 8887777666 55544443
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.63 E-value=6.9 Score=25.27 Aligned_cols=86 Identities=12% Similarity=0.137 Sum_probs=57.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 040367 30 NKHYDTVLSLFKRLNSTGLFPDLYTYNIL--INCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAA 107 (400)
Q Consensus 30 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 107 (400)
....++|..+-+.+...+ +. -...+ +..+...|++++|..+.+... .||...|.+|-. .+.|-.+++.
T Consensus 20 ~H~HqEA~tIAdwL~~~~---~~-E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le 89 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKG---EE-EAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALE 89 (116)
T ss_dssp TTCHHHHHHHHHHHHHTT---CH-HHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHH
T ss_pred chHHHHHHHHHHHHHhCC---cH-HHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHH
Confidence 446788888888887764 32 22333 355678889998887776544 678877776654 3677778888
Q ss_pred HHHHHHHHcCCCCCHHHHH
Q 040367 108 ALFTKLRVFGCEPNVFTYN 126 (400)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~ 126 (400)
..+.++-..| .|....|.
T Consensus 90 ~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 90 SRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHHH
Confidence 7777777666 45444443
No 266
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.11 E-value=9.7 Score=26.60 Aligned_cols=68 Identities=13% Similarity=-0.001 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHhcCCh---hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 040367 49 FPDLYTYNILINCFCKMGRV---SHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVF 116 (400)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (400)
.|+..+-..+..++++..+. .+++.+++.+.+.+........-.|.-++.+.|++++|.+..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34444444444444444432 234555555554432222333333444455555555555555555544
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.89 E-value=7.4 Score=25.09 Aligned_cols=77 Identities=12% Similarity=0.027 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHH
Q 040367 265 RVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFD 344 (400)
Q Consensus 265 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 344 (400)
..++|..+-+.+...+. ...+--+-+..+.+.|+|++|..+.+.. .-||...|..+.. .+.|-.+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45555555555554431 1111112223345556666555543322 2345444433322 34555555555554
Q ss_pred HHHHc
Q 040367 345 EMQRD 349 (400)
Q Consensus 345 ~~~~~ 349 (400)
++-..
T Consensus 93 ~la~s 97 (115)
T 2uwj_G 93 GLGGS 97 (115)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 44444
No 268
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.42 E-value=7.8 Score=25.03 Aligned_cols=77 Identities=12% Similarity=0.072 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHH
Q 040367 265 RVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFD 344 (400)
Q Consensus 265 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 344 (400)
..++|..+-+.+...+. ...+--+-+..+.+.|+|++|..+.+... -||...|..+.. .+.|-.+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45555555555554431 11111122233455566666655543322 345554443322 34555555555554
Q ss_pred HHHHc
Q 040367 345 EMQRD 349 (400)
Q Consensus 345 ~~~~~ 349 (400)
++-..
T Consensus 94 ~la~s 98 (116)
T 2p58_C 94 RLARS 98 (116)
T ss_dssp HHTTC
T ss_pred HHHhC
Confidence 44443
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=81.23 E-value=15 Score=27.47 Aligned_cols=73 Identities=19% Similarity=0.176 Sum_probs=46.3
Q ss_pred CCChHhHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 040367 177 NPDVVTYTSVIRGFCY--ANDWNEAKCLLIEMMDQGVQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPN 249 (400)
Q Consensus 177 ~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 249 (400)
.-|..-....+..--. .+...++.++|..|...|+-. -+..|......+...|++.+|.++|+.-++.+..|-
T Consensus 74 kND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4455554444443222 444667778888877665433 344566667777777888888888888777766664
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.70 E-value=21 Score=28.95 Aligned_cols=113 Identities=10% Similarity=0.079 Sum_probs=61.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHH----HHHHHHHcCCCCCHHhHHHHH
Q 040367 182 TYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASR----LLDLMIQIGVRPNAFVYNTLM 257 (400)
Q Consensus 182 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~ 257 (400)
.|.++..-|.+.+++++|++++..-.. .+.+.|+...|-+ +++-..+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 445555666777777777777654321 2333444443333 233344446666666666666
Q ss_pred HHHHhcCCHH-HHHHHHHHHH----hcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 040367 258 DGFCLTGRVN-RAKELFVSME----SMG--CTHTVFSYSILINGYCKNKEIEGALSLYG 309 (400)
Q Consensus 258 ~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 309 (400)
..+......+ .=.++.+.+. +.+ ..-++.....+...|.+.|++.+|...|-
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 6654432111 1122233332 221 12366777788888888888888777653
No 271
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=79.69 E-value=14 Score=26.19 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=25.6
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccc
Q 040367 339 AFKLFDEMQRDGVAA-DTWTYRTFIDGLCKNSYIVEAVELFRTLRILKCEL 388 (400)
Q Consensus 339 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 388 (400)
+.++|..|...|+.. -+..|......+...|++++|.++|+.-++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 455555555554422 24445555555555555555555555555544444
No 272
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=78.64 E-value=25 Score=28.55 Aligned_cols=195 Identities=8% Similarity=0.049 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH---
Q 040367 33 YDTVLSLFKRLNSTGLF-PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAA--- 108 (400)
Q Consensus 33 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--- 108 (400)
.++.+.-++.-.+.|-- --...|.++..-|.+.+++++|++++..-.. .+.+.|+...|-+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHH
Confidence 44455555554444410 0123556666667777777777777654332 2334455544433
Q ss_pred -HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHH
Q 040367 109 -LFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVI 187 (400)
Q Consensus 109 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 187 (400)
+.+...+.+++++......++..+......+. .......+|++.-.+.... ...++.....+.
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~---------------~r~~fi~~ai~WS~~~g~~-~~Gdp~LH~~~a 141 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEP---------------NLKDVITGMNNWSIKFSEY-KFGDPYLHNTIG 141 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCT---------------THHHHHHHHHHHHHHTSSC-TTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCc---------------hHHHHHHHHHHHHhhcCCC-CCCCHHHHHHHH
Confidence 35555566777777777777766655432110 0011123333332222111 123667788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC---CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 040367 188 RGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKN---GKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG 264 (400)
Q Consensus 188 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 264 (400)
..|.+.|++.+|...|-. |...+...+..++.-+... |...++ +...-.. +--|...+
T Consensus 142 ~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~Ra-VL~yL~l~ 202 (312)
T 2wpv_A 142 SKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRL-VFNYLFIS 202 (312)
T ss_dssp HHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHH-HHHHHHTT
T ss_pred HHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHH-HHHHHHhc
Confidence 888899999888877641 1111344555444433333 333222 1111122 22344677
Q ss_pred CHHHHHHHHHHHH
Q 040367 265 RVNRAKELFVSME 277 (400)
Q Consensus 265 ~~~~a~~~~~~~~ 277 (400)
+...|..++....
T Consensus 203 n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 203 NISFAHESKDIFL 215 (312)
T ss_dssp BHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 8888888877654
No 273
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.24 E-value=27 Score=28.68 Aligned_cols=188 Identities=14% Similarity=0.124 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHhCCCC---C-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 040367 161 VDKAKELFLQMKDENIN---P-DVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASR 236 (400)
Q Consensus 161 ~~~a~~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 236 (400)
+++.+.-++.-++.|-- - -...|.++..-|.+.+++++|++++..-.. .+.+.|+...+-+
T Consensus 12 ~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~D 76 (336)
T 3lpz_A 12 IERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGD 76 (336)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHH
Confidence 44555555555555411 0 123566677778888999998887755321 2333444444333
Q ss_pred H----HHHHHHcCCCCCHHhHHHHHHHHHhcCCHH-HHHHHHHHHH----hcC--CCCChhhHHHHHHHHHhcCCHHHHH
Q 040367 237 L----LDLMIQIGVRPNAFVYNTLMDGFCLTGRVN-RAKELFVSME----SMG--CTHTVFSYSILINGYCKNKEIEGAL 305 (400)
Q Consensus 237 ~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 305 (400)
+ ++-..+.+.+++......++..+.....-+ .=..+.+.+. +.+ ..-++.....+...|.+.+++.+|.
T Consensus 77 L~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae 156 (336)
T 3lpz_A 77 LAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAE 156 (336)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 3 344444566677766666666665544311 1122222222 222 2336677778888899999988888
Q ss_pred HHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 040367 306 SLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTLR 382 (400)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 382 (400)
..|- .|-.+....+..++.-+...+... .++...-. .+--|.-.++...|..+++...
T Consensus 157 ~H~i----lg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaR-aVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 157 KHLV----LGTKESPEVLARMEYEWYKQDESH--------------TAPLYCAR-AVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHT----TSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHH-HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHH----hcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHH-HHHHHHHhCCHHHHHHHHHHHH
Confidence 7762 233333455655554443333211 11222222 2333556677777777666655
No 274
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=76.10 E-value=19 Score=25.88 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhCCCCCc-hhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCH
Q 040367 303 GALSLYGEMLSKGIKPD-VVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADT 355 (400)
Q Consensus 303 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 355 (400)
.+.++|..|..+|+--. ...|......+-..|++.+|.++|+..++.+-.|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 35667777777655432 344556666666778888888888887777666643
No 275
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=72.40 E-value=57 Score=29.63 Aligned_cols=177 Identities=11% Similarity=0.002 Sum_probs=97.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 040367 194 NDWNEAKCLLIEMMDQGVQPNVVTFNVIMD----ELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 269 (400)
Q Consensus 194 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 269 (400)
.+.+.|...+....+.. ..+......+-. .....+...++...+....... .+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 37788888888776543 223332222222 2233343556666666654432 3333333444445567888888
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------------CCCCc-------h---h-----h
Q 040367 270 KELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSK------------GIKPD-------V---V-----I 322 (400)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~~-------~---~-----~ 322 (400)
...|..|.... .......--+.+++...|+.++|..+|+.+.+. |.++. . . .
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~ 383 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGP 383 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSH
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccCh
Confidence 88888876532 123444456677778888888888888776542 21110 0 0 0
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHH
Q 040367 323 YNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVEL 377 (400)
Q Consensus 323 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 377 (400)
-...+..+...|....|...+..+.+. . +......+.......|.++.++..
T Consensus 384 ~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~ 435 (618)
T 1qsa_A 384 EMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQA 435 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHH
Confidence 112234556778888888777776653 2 333333444444556666655543
No 276
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.39 E-value=75 Score=30.77 Aligned_cols=110 Identities=8% Similarity=0.001 Sum_probs=60.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccc-hHHHHHHHHHH
Q 040367 93 LIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGF-VDKAKELFLQM 171 (400)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~ 171 (400)
++..+...|.++-|.++. .. .+.++..-..+..+|...|++++|...|+++...-........ .+....++...
T Consensus 816 l~~~L~~~~~~~~a~eL~----~~-~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----GW-LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----GG-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHHHHH----hh-cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence 444455555555444322 21 2445555567888999999999999999886433222211111 12222333222
Q ss_pred HhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040367 172 KDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQ 209 (400)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 209 (400)
... .....-|..++..+-+.+.++-++++-+.+++.
T Consensus 891 e~~--~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 891 HHQ--NLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTC--SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccc--chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 111 112235666777777777777777777776653
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=69.50 E-value=27 Score=24.72 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=38.3
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 040367 177 NPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPN 249 (400)
Q Consensus 177 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 249 (400)
..|..-....+..--... ++.++|..|...|+-. -+..|......+...|++.+|.++|+.-++.+..|-
T Consensus 65 knD~RyLklWl~ya~~~~---dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 65 HNDPRFISYCLKFAEYNS---DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp TTCHHHHHHHHHHHTTBS---CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cCCHHHHHHHHHHHHhcC---CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 345544444443322222 2566666666655432 334455556666666777777777776666655553
No 278
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=69.14 E-value=29 Score=27.17 Aligned_cols=56 Identities=20% Similarity=0.149 Sum_probs=26.5
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 040367 22 ILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLY---TYNILINCFCKMGRVSHGFVVLGRILRSCFTP 85 (400)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 85 (400)
..+...++.|+.+....+++ .|..++.. .-.+.+...+..|+.+- ++.+.+.|..+
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~ 65 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDI----VELLLRHGADP 65 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHH----HHHHHHTTCCT
T ss_pred hHHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHH----HHHHHHcCCCC
Confidence 34555677788765555444 44332211 11233444455666544 44444455443
No 279
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=68.22 E-value=28 Score=26.46 Aligned_cols=185 Identities=12% Similarity=0.057 Sum_probs=82.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHh--HHHHHHHHHh
Q 040367 187 IRGFCYANDWNEAKCLLIEMMDQGVQPNVV--TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFV--YNTLMDGFCL 262 (400)
Q Consensus 187 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~ 262 (400)
+...+..|+.+.+..+++.+.+.+..++.. .-.+.+...+..|+.+- ++.+.+.|..++... -.+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 344566788887777777666555333221 01122334455666653 344444554433211 1122333446
Q ss_pred cCCHHHHHHHHHHHHhcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhh---HHHHHHHHHhhCcH
Q 040367 263 TGRVNRAKELFVSMESMGCT---HTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVI---YNTLFVVLFEIHQV 336 (400)
Q Consensus 263 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~ 336 (400)
.|+.+-+..+++.....+.. .+....+.+.. .+..|+.+- ++.+.+.|..++... -...+...+..|+.
T Consensus 89 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~-A~~~~~~~~----~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~ 163 (241)
T 1k1a_A 89 HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV-AVNTECQET----VQLLLERGADIDAVDIKSGRSPLIHAVENNSL 163 (241)
T ss_dssp TTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHH-HHHHTCHHH----HHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHcCCCccccccccCcCCCcHHHH-HHHcCCHHH----HHHHHHcCCCcccccccCCCcHHHHHHHcCCH
Confidence 67766665555543311111 12222233332 334455443 444445554443221 11233334456776
Q ss_pred HHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhcccch
Q 040367 337 ERAFKLFDEMQRDGVAADT---WTYRTFIDGLCKNSYIVEAVELFRTLRILKCELD 389 (400)
Q Consensus 337 ~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 389 (400)
+-+..++ +.|..++. .-.+ .+......|+.+ +++.+.+.|..|+
T Consensus 164 ~~v~~Ll----~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 164 SMVQLLL----QHGANVNAQMYSGSS-ALHSASGRGLLP----LVRTLVRSGADSS 210 (241)
T ss_dssp HHHHHHH----HTTCCTTCBCTTSCB-HHHHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred HHHHHHH----HcCCCCCCcCCCCCC-HHHHHHHcCCHH----HHHHHHhcCCCCC
Confidence 5444444 44443321 1111 222334456544 4445556666554
No 280
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=67.08 E-value=54 Score=27.26 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 040367 90 FTSLIKGLCAESRIMEAAALFTKLR 114 (400)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~ 114 (400)
...++.-|...++.++|...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 3455666677777777777776654
No 281
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=65.89 E-value=29 Score=26.48 Aligned_cols=52 Identities=10% Similarity=0.169 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhCCCCCc-hhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCC
Q 040367 302 EGALSLYGEMLSKGIKPD-VVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAA 353 (400)
Q Consensus 302 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 353 (400)
+.+..+|..|...|+--. ...|......+-..|++.+|.++|+..++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 456677777777655432 3455666667777788888888888877776666
No 282
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=62.03 E-value=72 Score=26.97 Aligned_cols=93 Identities=11% Similarity=-0.036 Sum_probs=61.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCCHHhHHH--
Q 040367 185 SVIRGFCYANDWNEAKCLLIEMMDQ--GVQPN---VVTFNVIMDELCKNGKMDEASRLLDLMIQI--GVRPNAFVYNT-- 255 (400)
Q Consensus 185 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~-- 255 (400)
-++..|...|++.+|.+++.++.+. ..... ..++..-+..|...+++.++...+...... .+.+++.+...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 5778888999999998888887753 11111 234556677788889999998888877553 22234433322
Q ss_pred --HHHHHH-hcCCHHHHHHHHHHHH
Q 040367 256 --LMDGFC-LTGRVNRAKELFVSME 277 (400)
Q Consensus 256 --l~~~~~-~~~~~~~a~~~~~~~~ 277 (400)
-...+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 233455 6888888888776654
No 283
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=60.70 E-value=44 Score=24.03 Aligned_cols=71 Identities=14% Similarity=0.050 Sum_probs=37.9
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 040367 177 NPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNA 250 (400)
Q Consensus 177 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 250 (400)
..|..-....+..--..+ .+.++|..|...|+-. -+..|......+...|++.+|.++|..-++.+..|-.
T Consensus 60 knD~RyLklWl~ya~~~~---~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLCN---EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp TTCHHHHHHHHHHHHHCS---CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccCHHHHHHHHHHHHhcC---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 345444444443222222 2455666666655432 3344555555666666777777777666666555543
No 284
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=60.69 E-value=83 Score=27.23 Aligned_cols=104 Identities=13% Similarity=0.068 Sum_probs=66.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 040367 31 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALF 110 (400)
Q Consensus 31 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 110 (400)
.+.+-|..+ +.+.|++--...|..-.+.+...|++++|..+-....+ |+-.+..|.+.+-.+=...|+..-.+.+|
T Consensus 343 ~n~~lA~~l---A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHH---HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 556655554 45556666777788888888999999999888776654 34446666655554444556666677777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 040367 111 TKLRVFGCEPNVFTYNTLINGLYRTGHTI 139 (400)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (400)
..+.+.| ..+..--.-+++.-...|+.+
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~ 446 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQ 446 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHH
Confidence 7777766 445433334455555555533
No 285
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=59.21 E-value=57 Score=24.87 Aligned_cols=70 Identities=11% Similarity=0.140 Sum_probs=43.0
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 040367 177 NPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPN 249 (400)
Q Consensus 177 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 249 (400)
.-|..-....+..--. .+.+..+|..|...|+-. -+..|......+...|++.+|..+|+.-++.+..|-
T Consensus 114 knD~RyLklWl~Ya~~---~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 114 KDDVRYLRIWMQYVNY---IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp TTCHHHHHHHHHHHTT---CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred cCCHHHHHHHHHHHHc---cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4455554444432222 245567777777666533 344566666677777888888888887777766653
No 286
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=59.00 E-value=14 Score=28.99 Aligned_cols=54 Identities=7% Similarity=-0.074 Sum_probs=25.0
Q ss_pred hhCcHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCcHHHHHHHHHHHHH-hcccch
Q 040367 332 EIHQVERAFKLFDEMQRDGVAADTWT--YRTFIDGLCKNSYIVEAVELFRTLRI-LKCELD 389 (400)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~ 389 (400)
..++.....++++.+.+.|..++... -.+.+......|+.+- ++.+.+ .|..++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~~g~~~~ 247 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL----VQRLLEQEHIEIN 247 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHH----HHHHHHSSSCCTT
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHH----HHHHHhccCCCcc
Confidence 34554444556666666665544321 1123333445565543 333443 454444
No 287
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=58.83 E-value=39 Score=23.92 Aligned_cols=64 Identities=16% Similarity=0.250 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCC
Q 040367 253 YNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKE--IEGALSLYGEMLSKGIK 317 (400)
Q Consensus 253 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 317 (400)
...++.=|...|+.++|...++++.... .....+...+..++-+.++ .+.+..++..+...++-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4566777777788888888887775211 0112223333334433222 34456666666655443
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=58.52 E-value=61 Score=25.00 Aligned_cols=91 Identities=18% Similarity=0.111 Sum_probs=51.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc--CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 040367 255 TLMDGFCLTGRVNRAKELFVSMESM--GCTH----TVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFV 328 (400)
Q Consensus 255 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 328 (400)
.-++.+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+++.. .+........+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 3477888888899998888877542 1121 111122223333333333334444444422 334555566667
Q ss_pred HHHhhCcHHHHHHHHHHHHH
Q 040367 329 VLFEIHQVERAFKLFDEMQR 348 (400)
Q Consensus 329 ~~~~~~~~~~a~~~~~~~~~ 348 (400)
.+.+.|+.++|.++|=+...
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 77788888888888876654
No 289
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=58.00 E-value=75 Score=25.86 Aligned_cols=26 Identities=12% Similarity=-0.031 Sum_probs=15.1
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHHcC
Q 040367 325 TLFVVLFEIHQVERAFKLFDEMQRDG 350 (400)
Q Consensus 325 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 350 (400)
..+....+.+++..|..+-+++++.+
T Consensus 212 ~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 212 VAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 33444556666666666666666543
No 290
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=55.17 E-value=49 Score=23.29 Aligned_cols=24 Identities=0% Similarity=-0.064 Sum_probs=10.1
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHH
Q 040367 334 HQVERAFKLFDEMQRDGVAADTWT 357 (400)
Q Consensus 334 ~~~~~a~~~~~~~~~~~~~~~~~~ 357 (400)
+..-.|.++++.+.+.+...+..|
T Consensus 40 ~~~~sa~ei~~~l~~~~~~is~aT 63 (150)
T 2xig_A 40 GTHLSPEEITHSIRQKDKNTSISS 63 (150)
T ss_dssp SSCBCHHHHHHHHHHHSTTCCHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCCHhh
Confidence 334444444444444433333333
No 291
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=54.38 E-value=65 Score=24.02 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=10.2
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 040367 192 YANDWNEAKCLLIEMMDQG 210 (400)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~ 210 (400)
+-.+.+.|+-++-+|++.|
T Consensus 26 RGSDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG 44 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHcC
Confidence 3455555555555555555
No 292
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=53.41 E-value=97 Score=25.76 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040367 182 TYTSVIRGFCYANDWNEAKCLLIEMM 207 (400)
Q Consensus 182 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 207 (400)
....++.-|...++.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 34567777888888888888888764
No 293
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=50.21 E-value=48 Score=21.26 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=16.5
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHhhC
Q 040367 304 ALSLYGEMLSKGIKPDVVIYNTLFVVLFEIH 334 (400)
Q Consensus 304 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 334 (400)
+.++.+++..-|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4445555555555555555555555554444
No 294
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=49.40 E-value=54 Score=23.07 Aligned_cols=58 Identities=10% Similarity=0.105 Sum_probs=25.6
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhC
Q 040367 276 MESMGCTHTVFSYSILINGYCKNK-EIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIH 334 (400)
Q Consensus 276 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 334 (400)
+.+.|..++..- ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 334444444332 23333333333 44455566665555544444444444444444444
No 295
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=49.12 E-value=73 Score=25.19 Aligned_cols=12 Identities=17% Similarity=0.191 Sum_probs=4.6
Q ss_pred hhCcHHHHHHHH
Q 040367 332 EIHQVERAFKLF 343 (400)
Q Consensus 332 ~~~~~~~a~~~~ 343 (400)
..|+.+-+..++
T Consensus 170 ~~g~~~~v~~Ll 181 (285)
T 3kea_A 170 KNGHVDMMILLL 181 (285)
T ss_dssp HTTCHHHHHHHH
T ss_pred HcChHHHHHHHH
Confidence 334444333333
No 296
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=48.94 E-value=46 Score=23.85 Aligned_cols=57 Identities=12% Similarity=0.101 Sum_probs=32.6
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCC
Q 040367 80 RSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVF--GCEPNVFTYNTLINGLYRTGH 137 (400)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 137 (400)
+.|.+.+. .-..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-
T Consensus 26 ~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 26 QGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 34555433 2334455555556666677777777665 444566665566666666654
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=47.57 E-value=64 Score=21.99 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 040367 253 YNTLMDGFCLTGRVNRAKELFVSME 277 (400)
Q Consensus 253 ~~~l~~~~~~~~~~~~a~~~~~~~~ 277 (400)
...++.=|...|+.++|...++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3455666666677777776666664
No 298
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=47.14 E-value=70 Score=22.30 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 040367 103 IMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTG 136 (400)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 136 (400)
.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3344444444444433334444444444444444
No 299
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=45.38 E-value=27 Score=19.92 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 040367 69 SHGFVVLGRILRSCFTPNAVTFTSLIKGL 97 (400)
Q Consensus 69 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (400)
++|.+.|.+|++..-.++..+|...++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 44555555555443334444555555544
No 300
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=44.97 E-value=78 Score=22.22 Aligned_cols=35 Identities=3% Similarity=-0.061 Sum_probs=15.9
Q ss_pred ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 040367 67 RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAES 101 (400)
Q Consensus 67 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (400)
..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555544443334444444444444444
No 301
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=44.88 E-value=99 Score=23.39 Aligned_cols=22 Identities=9% Similarity=-0.064 Sum_probs=13.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 040367 258 DGFCLTGRVNRAKELFVSMESM 279 (400)
Q Consensus 258 ~~~~~~~~~~~a~~~~~~~~~~ 279 (400)
..|.+.|.+++|.+++++....
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHhcchHHHHHHHHHHhcC
Confidence 3455666666666666666543
No 302
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=44.83 E-value=77 Score=22.09 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=29.2
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 040367 42 RLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESR 102 (400)
Q Consensus 42 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (400)
.+.+.|++++..- ..++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+.+.|-
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3444555544432 23333444444 55566666666655544455554445555555553
No 303
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=44.69 E-value=51 Score=22.79 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=25.6
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 040367 21 NILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 66 (400)
Q Consensus 21 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 66 (400)
..++..+...+.+-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3445555555556666666666666554445555444455555444
No 304
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=44.38 E-value=80 Score=22.17 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=20.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 040367 95 KGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGH 137 (400)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 137 (400)
..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 34 ~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 34 SVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3333334444555555555544433444444444555555443
No 305
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=43.96 E-value=76 Score=21.77 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 040367 102 RIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGH 137 (400)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 137 (400)
..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 344445555554444333344444444444444443
No 306
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=43.94 E-value=1.2e+02 Score=23.96 Aligned_cols=112 Identities=11% Similarity=0.022 Sum_probs=50.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 040367 221 IMDELCKNGKMDEASRLLDLMIQIGVRPNAF-VYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNK 299 (400)
Q Consensus 221 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 299 (400)
.+...+..|+.+-+ +.+.+.|..+... .-.+.+...+..|+.+-+..+++.-...+. .+....+..+...+..|
T Consensus 132 ~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~ 206 (285)
T 3kea_A 132 SFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNK 206 (285)
T ss_dssp HHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHT
T ss_pred HHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcC
Confidence 33444555665433 3334444332111 223334444566777666666655433221 12222222222333445
Q ss_pred CHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHHHHHHHHHHH
Q 040367 300 EIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVERAFKLFDEM 346 (400)
Q Consensus 300 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 346 (400)
+. ++.+.+.+.|..++..... -...|+.+-+.-+++.-
T Consensus 207 ~~----~~v~~Ll~~gad~~~~~~~-----a~~~~~~~iv~~Ll~~g 244 (285)
T 3kea_A 207 DI----EMLQALFKYDINIYSANLE-----NVLLDDAEIAKMIIEKH 244 (285)
T ss_dssp CH----HHHHHHTTSCBCSTTTTGG-----GGTTTCHHHHHHHHHHH
T ss_pred CH----HHHHHHHHcCCCCCCCChh-----hhhcCCHHHHHHHHHcC
Confidence 53 3455566677766655421 13356655555555443
No 307
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=43.86 E-value=79 Score=21.99 Aligned_cols=39 Identities=13% Similarity=-0.026 Sum_probs=17.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 040367 99 AESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGH 137 (400)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 137 (400)
..+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 33 ~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 33 NSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred hCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 333444455555555444433344444444444444443
No 308
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=43.66 E-value=99 Score=23.02 Aligned_cols=39 Identities=13% Similarity=0.079 Sum_probs=26.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 040367 191 CYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNG 229 (400)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 229 (400)
.+-.|.+.|+-++-+|++.|-.|....-..++.+...-|
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 456788888888888888876665555555555554444
No 309
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=43.38 E-value=2.4e+02 Score=27.37 Aligned_cols=50 Identities=16% Similarity=0.085 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcC
Q 040367 320 VVIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADT----WTYRTFIDGLCKNS 369 (400)
Q Consensus 320 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 369 (400)
...|..++..+-+.+.++-+.++-+.+++.--..|. ..|..+.++.+..|
T Consensus 897 ~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 897 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 346788888899999999999998888875222233 35667777666554
No 310
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=42.98 E-value=86 Score=22.15 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHH
Q 040367 217 TFNVIMDELCKNGKMDEASRLLDLMI 242 (400)
Q Consensus 217 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 242 (400)
....++.-|...|+.++|.+.++++.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 34566777777788888877777764
No 311
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=42.12 E-value=87 Score=22.37 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=48.2
Q ss_pred hhHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhc--CCCCChhhHHHHHHHHHhcCCH
Q 040367 33 YDTVLSLFKR-LNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS--CFTPNAVTFTSLIKGLCAESRI 103 (400)
Q Consensus 33 ~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 103 (400)
.+.+++-+++ +.+.|++.+.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+.+.|-.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3455555544 45668777654 456777788888889999999999887 6666666655566666666643
No 312
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=42.10 E-value=1.1e+02 Score=23.06 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=21.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 040367 192 YANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNG 229 (400)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 229 (400)
+-++++.|+-++-+|++.|-.|....-..++.+...-|
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 44666666666666666665544444444444444433
No 313
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=41.47 E-value=60 Score=22.12 Aligned_cols=44 Identities=16% Similarity=0.159 Sum_probs=22.5
Q ss_pred HHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 040367 23 LFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 66 (400)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 66 (400)
++..+...+.+-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 44444444555566666666655544444444444444444444
No 314
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=41.32 E-value=1.1e+02 Score=22.81 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=36.4
Q ss_pred HHHHH---HhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-----HHHHHHHHHHHHhcC
Q 040367 221 IMDEL---CKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGR-----VNRAKELFVSMESMG 280 (400)
Q Consensus 221 l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~ 280 (400)
+++++ .+-.+.+.|+-++.+|++.|-.|....-..++.+....|. ...|...++.....|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 44444 3457889999999999988866655444445555444442 344455555555555
No 315
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=40.83 E-value=47 Score=22.34 Aligned_cols=48 Identities=8% Similarity=-0.079 Sum_probs=21.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 040367 58 LINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAA 108 (400)
Q Consensus 58 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 108 (400)
.|......++.+-|.++++.....| +...|.+++-.|...=+++-+++
T Consensus 38 AietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 38 AMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp HHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 3333444444444444444444432 34444444444444444444433
No 316
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=40.70 E-value=90 Score=21.71 Aligned_cols=62 Identities=6% Similarity=-0.011 Sum_probs=41.6
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 040367 41 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRI 103 (400)
Q Consensus 41 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (400)
+.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3456677776554 3455556666667778888888888776666666666667777776654
No 317
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=39.73 E-value=89 Score=21.40 Aligned_cols=60 Identities=13% Similarity=0.068 Sum_probs=30.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 040367 43 LNSTGLFPDLYTYNILINCFCKMG-RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRI 103 (400)
Q Consensus 43 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (400)
+.+.|++++..- ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+.+.|-+
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 445555544432 33444444444 5556666666666655455555555555555555543
No 318
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=39.42 E-value=73 Score=20.33 Aligned_cols=36 Identities=14% Similarity=0.044 Sum_probs=19.1
Q ss_pred ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 040367 67 RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEA 106 (400)
Q Consensus 67 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 106 (400)
..+.|.+++..+...| ..+|..++.++...|...-|
T Consensus 52 ~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHH
Confidence 4566666666665543 23455555555554544433
No 319
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=37.58 E-value=69 Score=23.33 Aligned_cols=15 Identities=7% Similarity=0.222 Sum_probs=7.2
Q ss_pred HHHHHHHHhCCCCCc
Q 040367 305 LSLYGEMLSKGIKPD 319 (400)
Q Consensus 305 ~~~~~~~~~~~~~~~ 319 (400)
.++.+.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 444455555554443
No 320
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=37.47 E-value=52 Score=24.78 Aligned_cols=50 Identities=10% Similarity=-0.004 Sum_probs=22.7
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCcHHHHHHHHHH
Q 040367 327 FVVLFEIHQVERAFKLFDEMQRDGVAADTWTY--RTFIDGLCKNSYIVEAVELFRT 380 (400)
Q Consensus 327 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~ 380 (400)
+...+..|+.+-+..+++ .|..++.... .+.+....+.|+.+-+..+++.
T Consensus 181 L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLLE----AGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHHHTCHHHHHHHHH----HTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence 344456677665544443 3433331110 1223344566766654444443
No 321
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=37.42 E-value=55 Score=22.31 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=28.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 040367 93 LIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGH 137 (400)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 137 (400)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 444455555666777777777766555566666666666666664
No 322
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=37.07 E-value=1.2e+02 Score=22.27 Aligned_cols=172 Identities=12% Similarity=0.070 Sum_probs=97.8
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 040367 50 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLI 129 (400)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 129 (400)
++...-...+..+...+..+ +...+..+.. .++...-...+.++...++.+. ...+..+.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHH
Confidence 56666667777777777643 4444444444 3466666666777777776433 333333332 46777777777
Q ss_pred HHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040367 130 NGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQ 209 (400)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 209 (400)
.++.+.++.+ +...+..+.. .++...-...+.++.+.|+.+ +...+..+..
T Consensus 103 ~aL~~~~~~~------------------------~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~- 153 (211)
T 3ltm_A 103 VALGQIGDER------------------------AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK- 153 (211)
T ss_dssp HHHHHHCCGG------------------------GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT-
T ss_pred HHHHHhCcHH------------------------HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc-
Confidence 8887777632 2222222222 345555566666666666643 4455555553
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 040367 210 GVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG 264 (400)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 264 (400)
.++..+-...+.++.+.+. ..+...+..+.+. ++..+-...+.++...+
T Consensus 154 --d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 154 --DEDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHK 202 (211)
T ss_dssp --CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC--
T ss_pred --CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcC
Confidence 3566666677777777766 4556666666553 35555555555555443
No 323
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=36.53 E-value=49 Score=22.91 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 040367 92 SLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYRTGH 137 (400)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 137 (400)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3445555555666677777777766655566666666666666664
No 324
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=36.22 E-value=2.1e+02 Score=24.67 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=34.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCc-----HHHHHHHHHHHHHcCCC
Q 040367 297 KNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQ-----VERAFKLFDEMQRDGVA 352 (400)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 352 (400)
+.++.+.|+.++.+|.+.|..|....-..+..+.-..|. ...|...++.....|.+
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~p 327 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPA 327 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCc
Confidence 457888999999999988877655544444444444343 33455555555555543
No 325
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=35.49 E-value=1e+02 Score=20.93 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=10.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHH
Q 040367 219 NVIMDELCKNGKMDEASRLLDLM 241 (400)
Q Consensus 219 ~~l~~~~~~~~~~~~a~~~~~~~ 241 (400)
..++.-|...|+.++|.+.++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 33444444445555555444444
No 326
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=35.24 E-value=1.4e+02 Score=22.27 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=6.9
Q ss_pred HHhcCCHHHHHHHHH
Q 040367 190 FCYANDWNEAKCLLI 204 (400)
Q Consensus 190 ~~~~~~~~~a~~~~~ 204 (400)
.+..|+.+....+++
T Consensus 13 A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 13 LAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 344455544444443
No 327
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=34.91 E-value=1.5e+02 Score=22.50 Aligned_cols=22 Identities=9% Similarity=0.123 Sum_probs=12.1
Q ss_pred CChhHHHHHHHHHHhCCCCCCH
Q 040367 31 KHYDTVLSLFKRLNSTGLFPDL 52 (400)
Q Consensus 31 ~~~~~a~~~~~~~~~~~~~~~~ 52 (400)
+++.+-.++++.+...++....
T Consensus 33 ~dFrq~rdi~eall~~~l~~~~ 54 (235)
T 3bu8_A 33 GDFRQIRDIMQALLVRPLGKEH 54 (235)
T ss_dssp HHHHHHHHHHHHHTTSCCCCCH
T ss_pred HHHHHHHHHHHHHHhCcccccc
Confidence 3455566666666655544443
No 328
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=34.50 E-value=70 Score=18.68 Aligned_cols=44 Identities=11% Similarity=0.119 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 040367 90 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLINGLYR 134 (400)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 134 (400)
++.++..+++..-.++++..+++..+.| ..+..+|..-.+.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4455555555556666666666666666 4555555555554444
No 329
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=34.39 E-value=1.3e+02 Score=21.59 Aligned_cols=52 Identities=8% Similarity=0.011 Sum_probs=31.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHhCCChHHHHHHHHHHHH
Q 040367 192 YANDWNEAKCLLIEMMDQGVQP--NVVTFNVIMD-E-----LCKNGKMDEASRLLDLMIQ 243 (400)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 243 (400)
..|++-+|-++++..-.....+ +...|..+|. . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477777777777776553334 3445555555 2 2345677777777766655
No 330
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=34.21 E-value=1.3e+02 Score=21.83 Aligned_cols=76 Identities=12% Similarity=0.065 Sum_probs=36.7
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 040367 179 DVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMD 258 (400)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 258 (400)
+...-...+.++.+.++. .+...+..+.. .++..+-...+.++.+.|. .++...+..+.+. ++..+-...+.
T Consensus 120 ~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~ 191 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVN 191 (201)
T ss_dssp SHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHH
Confidence 444444455555555543 33444444443 2455555556666666654 3444555555443 24444444444
Q ss_pred HHHh
Q 040367 259 GFCL 262 (400)
Q Consensus 259 ~~~~ 262 (400)
++.+
T Consensus 192 aL~~ 195 (201)
T 3ltj_A 192 YLET 195 (201)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 331
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.43 E-value=2.2e+02 Score=24.02 Aligned_cols=98 Identities=11% Similarity=0.128 Sum_probs=58.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC----------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCC
Q 040367 93 LIKGLCAESRIMEAAALFTKLRVFG----------------CEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFG 156 (400)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 156 (400)
++.......+.+++.+.++.+...- ..........+...|...|+.+.|..++++.
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~-------- 153 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDL-------- 153 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHH--------
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH--------
Confidence 4455667788899999888764320 1223445566778888999988888775554
Q ss_pred cccchHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 040367 157 VEGFVDKAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEM 206 (400)
Q Consensus 157 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 206 (400)
...++.............|......+...+++..+....-..
T Consensus 154 --------~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~ 195 (393)
T 4b4t_O 154 --------EKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLY 195 (393)
T ss_dssp --------HHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------HHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333433322111112334555666677778877765554443
No 332
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=32.77 E-value=33 Score=19.58 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=13.3
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCC
Q 040367 100 ESRIMEAAALFTKLRVFG-CEPN 121 (400)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~-~~~~ 121 (400)
.-+++.|...|.++...| ++|+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHH
Confidence 346677777777776554 4443
No 333
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=32.49 E-value=2e+02 Score=23.21 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=13.0
Q ss_pred HHHHHHHhccCChhHHHHHHH
Q 040367 21 NILFGCLAKNKHYDTVLSLFK 41 (400)
Q Consensus 21 ~~l~~~~~~~~~~~~a~~~~~ 41 (400)
+..+...++.|+.+-+..+++
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~ 46 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLE 46 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHH
Confidence 344555577888776665554
No 334
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=32.48 E-value=2.4e+02 Score=24.28 Aligned_cols=124 Identities=15% Similarity=0.054 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHhC
Q 040367 103 IMEAAALFTKLRVF--------GCEPNVFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFGVEGFVDKAKELFLQMKDE 174 (400)
Q Consensus 103 ~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 174 (400)
.++...+++..... ++..+......++.. ..|+...++.+++.+........ .+...--.+.+++....
T Consensus 167 ~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~-~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 167 TEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDD-SGKRVLKPELLTEIAGE 243 (447)
T ss_dssp HHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCT-TSCEECCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhccccc-CCCCccCHHHHHHHHhh
Confidence 34555566655542 233456666666655 46888888888887754332100 00000011222222222
Q ss_pred CC---CCChHhHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 040367 175 NI---NPDVVTYTSVIRGF---CYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNG 229 (400)
Q Consensus 175 ~~---~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 229 (400)
.. ..+...+..+++++ .+.++.+.|+.++.+|.+.|..|....-..+..+...-|
T Consensus 244 ~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 244 RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp CCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 11 11112222334443 345778888888888888776555444444444444333
No 335
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=32.24 E-value=1.7e+02 Score=22.49 Aligned_cols=88 Identities=15% Similarity=0.090 Sum_probs=47.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhc--CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 040367 58 LINCFCKMGRVSHGFVVLGRILRS--CFTP----NAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPNVFTYNTLING 131 (400)
Q Consensus 58 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (400)
-++.+....++++|.+++++..+. +.++ ........+..-.....-.-+..+.+.+.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 355667777777777777665432 1121 112222333333333333334444444422 4456666677778
Q ss_pred HHhcCChHHHHHHHHHH
Q 040367 132 LYRTGHTIVALNLFEEM 148 (400)
Q Consensus 132 ~~~~~~~~~a~~~~~~~ 148 (400)
+.+.|+.++|..+|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 88888887777776554
No 336
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.18 E-value=2.7e+02 Score=24.66 Aligned_cols=80 Identities=10% Similarity=0.034 Sum_probs=53.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCC-cccch
Q 040367 87 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGC-EPN---VFTYNTLINGLYRTGHTIVALNLFEEMASGNGEFG-VEGFV 161 (400)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 161 (400)
...+|.+++.|...+.++.|..+..+..--.. .++ ..-+..+...+.-.+++.+|.+.+.......+... ..|..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr 310 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFL 310 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHH
Confidence 45688899999999999999999998751100 111 11223456777788999999999888877654433 34445
Q ss_pred HHHHH
Q 040367 162 DKAKE 166 (400)
Q Consensus 162 ~~a~~ 166 (400)
..+.+
T Consensus 311 ~~a~K 315 (523)
T 4b4t_S 311 QQSNK 315 (523)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 337
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=32.05 E-value=42 Score=25.97 Aligned_cols=15 Identities=20% Similarity=-0.055 Sum_probs=8.3
Q ss_pred hcCCHHHHHHHHHHH
Q 040367 192 YANDWNEAKCLLIEM 206 (400)
Q Consensus 192 ~~~~~~~a~~~~~~~ 206 (400)
+.|+.+-+..+++.-
T Consensus 58 ~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 58 SAGRNDTIPILLDIA 72 (260)
T ss_dssp BTTBCTHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhc
Confidence 456666555555543
No 338
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=31.98 E-value=1.4e+02 Score=21.36 Aligned_cols=52 Identities=6% Similarity=-0.051 Sum_probs=31.7
Q ss_pred hcCChhhHHHHHHHHHhcCCCC--ChhhHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 040367 64 KMGRVSHGFVVLGRILRSCFTP--NAVTFTSLIK-G-----LCAESRIMEAAALFTKLRV 115 (400)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 115 (400)
..|++-+|-++++.+-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477777777777776554344 4455666666 2 2346777777777766654
No 339
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=31.14 E-value=1.6e+02 Score=21.93 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=38.0
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCC
Q 040367 226 CKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGR-----VNRAKELFVSMESMGCTH 283 (400)
Q Consensus 226 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 283 (400)
.+-.+.+.|+-++.+|++.| .|....-..++.+....|. ...|...++.....|.+-
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 34578999999999999998 6555444555555555543 445566667777777443
No 340
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=30.77 E-value=1.6e+02 Score=21.64 Aligned_cols=170 Identities=13% Similarity=0.052 Sum_probs=92.1
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 040367 178 PDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLM 257 (400)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 257 (400)
++...-...+..+.+.|+. .+...+..+... ++...-...+.++...+..+ +...+..+.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALKD---EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 4555555666666666663 344444444442 46666666666777766543 3333333332 35666666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhhCcHH
Q 040367 258 DGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVVIYNTLFVVLFEIHQVE 337 (400)
Q Consensus 258 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 337 (400)
.++.+.++.+. ...+..+.. .++..+-...+.++...++.+ +...+..+.+ .++..+-...+.++.+.+. .
T Consensus 103 ~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 103 VALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 77777776543 333333432 456666666666776666543 4444444443 2355555666666666665 4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 040367 338 RAFKLFDEMQRDGVAADTWTYRTFIDGLCK 367 (400)
Q Consensus 338 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 367 (400)
.+...+..+.+. ++..+-...+.++.+
T Consensus 174 ~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 174 RVRAAMEKLAET---GTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHHHHHHH---CCHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC---CCHHHHHHHHHHHHh
Confidence 455555555543 344444444444443
No 341
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=30.13 E-value=92 Score=18.98 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=27.8
Q ss_pred HhcCCC-CCChhhHHHHHHHHhccCChhHHHHHHHHHHh
Q 040367 8 LNMRPS-PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNS 45 (400)
Q Consensus 8 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 45 (400)
+.+-|. ||++.+|+-+.+.+-+..-..+++.+.+++..
T Consensus 26 L~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy~ 64 (81)
T 2ko4_A 26 LQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEVYK 64 (81)
T ss_dssp HTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHHH
T ss_pred HhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 333343 78999999999888777777777777776643
No 342
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=29.76 E-value=1.1e+02 Score=19.27 Aligned_cols=62 Identities=13% Similarity=0.172 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 040367 36 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIME 105 (400)
Q Consensus 36 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 105 (400)
...+++.+.+.|+- +..-+..+-. .....++|..+++.+... ....|..++.++.+.+...-
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~k----G~~af~~F~~aL~~~~~~~L 85 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKK----DNDSYVSFYNALLHEGYKDL 85 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHc----CHHHHHHHHHHHHHcCHHHH
Confidence 34566666666543 4444433333 245677777777777654 45667777777766665433
No 343
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=29.57 E-value=1.6e+02 Score=21.32 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=16.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 040367 221 IMDELCKNGKMDEASRLLDLMIQIGVRPN 249 (400)
Q Consensus 221 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 249 (400)
.+...+..|+.+.-.++.+.+++.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 33444555665555566666666665544
No 344
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=29.49 E-value=1.2e+02 Score=21.15 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=8.2
Q ss_pred HHHhCCChHHHHHHHH
Q 040367 224 ELCKNGKMDEASRLLD 239 (400)
Q Consensus 224 ~~~~~~~~~~a~~~~~ 239 (400)
..++.|+.+....+++
T Consensus 14 ~A~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 14 EAAKAGDVETVKKLCT 29 (165)
T ss_dssp HHHHHTCHHHHHHHCC
T ss_pred HHHHhCCHHHHHHHHH
Confidence 3445566555555443
No 345
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=29.48 E-value=1.8e+02 Score=21.77 Aligned_cols=21 Identities=10% Similarity=0.102 Sum_probs=10.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 040367 97 LCAESRIMEAAALFTKLRVFG 117 (400)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~ 117 (400)
.+..|+.+.+..+++.+.+.|
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 344555555555555444443
No 346
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=29.35 E-value=1.3e+02 Score=24.80 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=16.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHH
Q 040367 218 FNVIMDELCKNGKMDEASRLLDLM 241 (400)
Q Consensus 218 ~~~l~~~~~~~~~~~~a~~~~~~~ 241 (400)
...++.-|...|+.++|.+.++++
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 455666777777777777777665
No 347
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=28.39 E-value=70 Score=24.62 Aligned_cols=56 Identities=14% Similarity=0.091 Sum_probs=34.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHH--hCCChHHHHHHHHHHH
Q 040367 187 IRGFCYANDWNEAKCLLIEMMDQGVQPNVV-------TFNVIMDELC--KNGKMDEASRLLDLMI 242 (400)
Q Consensus 187 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~~ 242 (400)
+...++.|+.+....+++.+.+.+..++.. -.+.+..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 344567888888888888777665444422 2233433332 5678777777776643
No 348
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=28.06 E-value=1.6e+02 Score=25.44 Aligned_cols=59 Identities=14% Similarity=0.051 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH--------hH-HHHHHHHHhcCCHHHHHHHHHH
Q 040367 217 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAF--------VY-NTLMDGFCLTGRVNRAKELFVS 275 (400)
Q Consensus 217 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~-~~l~~~~~~~~~~~~a~~~~~~ 275 (400)
..+.+.+.|.+.++...+..+++.+...+..|+.. +| .-+...+...+++.+|.+.+..
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~ 245 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNE 245 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHH
Confidence 34556667777777777777777766655432221 11 1233444455566665555443
No 349
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=27.99 E-value=1e+02 Score=18.55 Aligned_cols=58 Identities=10% Similarity=0.040 Sum_probs=26.1
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 040367 43 LNSTGLFPDLYTYNILINCFCKMG-RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAES 101 (400)
Q Consensus 43 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (400)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344454444332 23334443332 34455555555555443344444444444444444
No 350
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=27.48 E-value=2.2e+02 Score=22.30 Aligned_cols=63 Identities=13% Similarity=0.037 Sum_probs=34.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-CCChHHHHHHHHHHHH
Q 040367 181 VTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK-NGKMDEASRLLDLMIQ 243 (400)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~ 243 (400)
.....++...-+.++++++.+..+++.+.+...+..--+.+-.+|-. -|....+++++..+.+
T Consensus 32 e~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieq 95 (261)
T 3ubw_A 32 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQ 95 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHH
Confidence 34444555566667777777776666666555555555555444422 2444555555554443
No 351
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1
Probab=27.08 E-value=1.7e+02 Score=20.93 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHhCCCCCC
Q 040367 161 VDKAKELFLQMKDENINPD 179 (400)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~~ 179 (400)
.+.|.++++.+...|-.|+
T Consensus 51 ~~HA~~l~~~i~~~gG~~~ 69 (167)
T 1krq_A 51 SDHAKKLITYLNETDSHVE 69 (167)
T ss_dssp HHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHHHHcCCCcc
Confidence 5667777777776654443
No 352
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=26.63 E-value=1.3e+02 Score=19.31 Aligned_cols=31 Identities=3% Similarity=-0.104 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 040367 71 GFVVLGRILRSCFTPNAVTFTSLIKGLCAES 101 (400)
Q Consensus 71 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (400)
|.++.+++...|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4445555555555555555555555554443
No 353
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=25.87 E-value=72 Score=23.74 Aligned_cols=25 Identities=16% Similarity=0.099 Sum_probs=15.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 040367 92 SLIKGLCAESRIMEAAALFTKLRVF 116 (400)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (400)
..+..|.+.|.+++|.+++++.-..
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHccchHHHHHHHHHHhcC
Confidence 3445677777777777777775543
No 354
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=25.40 E-value=1.3e+02 Score=19.01 Aligned_cols=24 Identities=13% Similarity=0.001 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHH
Q 040367 323 YNTLFVVLFEIHQVERAFKLFDEM 346 (400)
Q Consensus 323 ~~~l~~~~~~~~~~~~a~~~~~~~ 346 (400)
+.-....+.+.|++++|++..+..
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHH
Confidence 344455666677777776665554
No 355
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.25 E-value=3.6e+02 Score=23.88 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040367 215 VVTFNVIMDELCKNGKMDEASRLLDLMIQIGV-RPNA---FVYNTLMDGFCLTGRVNRAKELFVSMESM 279 (400)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 279 (400)
...++.++..|...+.++.|..+..+..--.. .++. .-+..+...+.-.+++.+|.+.+....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45677777788888888888888777631100 1111 11223455566677888888777777654
No 356
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=24.64 E-value=53 Score=22.13 Aligned_cols=53 Identities=6% Similarity=0.008 Sum_probs=35.0
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 040367 19 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 74 (400)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 74 (400)
.|--.|.....+++.+-|.++++...+.| +...|.+.+-.|...=+++-++++
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 35555666667777777777777777665 666777777776666666665443
No 357
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=24.29 E-value=2.3e+02 Score=21.35 Aligned_cols=57 Identities=16% Similarity=0.199 Sum_probs=37.7
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCC
Q 040367 226 CKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGR-----VNRAKELFVSMESMGCT 282 (400)
Q Consensus 226 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 282 (400)
.+-.+.+.|+-++.+|++.|-.|....-..++.+....|. ...|...++.....|.+
T Consensus 46 iRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 46 IRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3457888899999999888866655555555555554443 45566667777777744
No 358
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=23.87 E-value=1.3e+02 Score=22.53 Aligned_cols=102 Identities=12% Similarity=0.079 Sum_probs=44.6
Q ss_pred HHhccCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh---HHHHHHHHHhc
Q 040367 26 CLAKNKHYDTVLSLFKRLNSTGLFPDLY--TYNILINCFCKMGRVSHGFVVLGRILRSCFTPNAVT---FTSLIKGLCAE 100 (400)
Q Consensus 26 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~ 100 (400)
..++.|+.+....+++ .|..++.. .-...+...+..|+.+-+. .+.+.+..++... -...+...+..
T Consensus 15 ~A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~~~~~~~~~~~~~~t~L~~A~~~ 86 (240)
T 3eu9_A 15 KATQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVK----YYISKGAIVDQLGGDLNSTPLHWATRQ 86 (240)
T ss_dssp HHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCBTTTTBCHHHHHHHH
T ss_pred HHHHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHH----HHHHcCCcchhhcCCcCCChhHHHHHc
Confidence 4566777665555544 44333211 1123444556667765444 4444433222110 11233444556
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCChH
Q 040367 101 SRIMEAAALFTKLRVFGCEPNVF--TYNTLINGLYRTGHTI 139 (400)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~ 139 (400)
|+.+-+.. +.+.|..++.. .-.+.+...+..|+.+
T Consensus 87 ~~~~~v~~----Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 123 (240)
T 3eu9_A 87 GHLSMVVQ----LMKYGADPSLIDGEGCSCIHLAAQFGHTS 123 (240)
T ss_dssp TCHHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred CCHHHHHH----HHHcCCCCcccCCCCCCHHHHHHHcCHHH
Confidence 66554443 44444443321 1112344445556644
No 359
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.43 E-value=3e+02 Score=22.39 Aligned_cols=80 Identities=10% Similarity=-0.073 Sum_probs=37.6
Q ss_pred HHHhcCCHHHHHHHHHHHHh-----cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchh---hHHHHHHHH
Q 040367 259 GFCLTGRVNRAKELFVSMES-----MGCTHTVFSYSILINGYCKNKEIEGALSLYGEMLSKGIKPDVV---IYNTLFVVL 330 (400)
Q Consensus 259 ~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~ 330 (400)
..+..|+.+-+..+++.-.. .+ ..+....+.|. ..+..|+.+ +.+.+++.|..++.. -.+.+ ...
T Consensus 179 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~gad~~~~d~~g~tpL-~~A 251 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDTVPSKSSLRLD-YANKQGNSHLH-WAILINWED----VAMRFVEMGIDVNMEDNEHTVPL-YLS 251 (364)
T ss_dssp HHHHTTCHHHHHHHHHHCSCSSSCCTT-CCCTTCCCTTH-HHHTTTCHH----HHHHHHTTTCCTTCCCTTSCCHH-HHH
T ss_pred HHHHcCCHHHHHHHHhccccccccccc-ccCCCCCcHHH-HHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHH-HHH
Confidence 34466776655555544222 11 11222223333 334556654 344455566554432 12233 333
Q ss_pred HhhCcHHHHHHHHHH
Q 040367 331 FEIHQVERAFKLFDE 345 (400)
Q Consensus 331 ~~~~~~~~a~~~~~~ 345 (400)
+..|+.+-+..+++.
T Consensus 252 ~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 252 VRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTCCHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHc
Confidence 456777777766665
No 360
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=22.95 E-value=1.6e+02 Score=21.16 Aligned_cols=58 Identities=10% Similarity=0.095 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHH
Q 040367 253 YNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSILINGYCKNKE--IEGALSLYGEML 312 (400)
Q Consensus 253 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~ 312 (400)
...++.=|...++.++|...++++.... ........++......++ -+.+-.++..+.
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~p~--~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~ 72 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEGKASHREMTSKLLSDLC 72 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCSG--GGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4567778888899999999998876321 122223334443333332 223455566653
No 361
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.22 E-value=47 Score=18.92 Aligned_cols=12 Identities=8% Similarity=0.044 Sum_probs=4.6
Q ss_pred CcHHHHHHHHHH
Q 040367 334 HQVERAFKLFDE 345 (400)
Q Consensus 334 ~~~~~a~~~~~~ 345 (400)
|+.+.|+..+-+
T Consensus 37 gdvd~aI~~LL~ 48 (59)
T 1wgl_A 37 GNKDAAINSLLQ 48 (59)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHc
Confidence 333333333333
No 362
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.09 E-value=2.4e+02 Score=20.27 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=5.7
Q ss_pred hccCChhHHHHHH
Q 040367 28 AKNKHYDTVLSLF 40 (400)
Q Consensus 28 ~~~~~~~~a~~~~ 40 (400)
+..|+.+....++
T Consensus 13 ~~~g~~~~v~~ll 25 (201)
T 3hra_A 13 ANQRDTKKVKEIL 25 (201)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhccHHHHHHHH
Confidence 3444544444443
No 363
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=20.75 E-value=5e+02 Score=23.90 Aligned_cols=287 Identities=8% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------hcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 040367 22 ILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC-------KMGRVSHGFVVLGRILRSCFTPNAVTFTSLI 94 (400)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (400)
.++-.|.+.|++++|.++.++.... +.--...|...+..++ ....-++...-|++..+. .|+...|...+
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~s~~~~L~~~~~~~l~~ey~~~~r~--~~~~DpyK~Av 233 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIKS--SLDGDPYRLAV 233 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--------------------------------CHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhC--CCCCCHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHcCCCCCCcccchH
Q 040367 95 KGLCAESRIMEAAALFTKLRVF-GCEPNVFTYNTLINGLYRTG-----------HTIVALNLFEEMASGNGEFGVEGFVD 162 (400)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~ 162 (400)
-...-.-+.. -... .+..+..-|--+=-.+.+.+ . ++
T Consensus 234 Y~Iig~cD~~--------~~~~~~v~~siED~LWl~L~lvre~~~~~~~~~e~yt-----------------------L~ 282 (661)
T 2qx5_A 234 YKLIGRCDLS--------RKNIPAVTLSIEDWLWMHLMLIKEKDAENDPVYERYS-----------------------LE 282 (661)
T ss_dssp HHHHHTCCGG--------GCCCGGGCCSHHHHHHHHHHTCCC----------CCC-----------------------HH
T ss_pred HHHHhccccc--------ccchHHHhccHHHHHHHHHHhccCCCccccccccccc-----------------------HH
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 040367 163 KAKELFLQMKDENINPDVVTYTSVIRGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMI 242 (400)
Q Consensus 163 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 242 (400)
+..+.+.+..+..+.+ ....++.-.|+++.|++.+-.. ...+..++...+..+.-.+- -+.+.
T Consensus 283 ~LQ~~I~~yGe~~F~~------lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~ll 345 (661)
T 2qx5_A 283 DFQNIIISYGPSRFSN------YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTR 345 (661)
T ss_dssp HHHHHHHHHCGGGGTT------CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC---------------
T ss_pred HHHHHHHHhhhhhhhh------HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC-------CCccc
Q ss_pred HcCCCCCHHhHHHHHHHHHhc---CCHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCCHHHHH-----------HH
Q 040367 243 QIGVRPNAFVYNTLMDGFCLT---GRVNRAKELFVSMESMG-CTHTVFSYSILINGYCKNKEIEGAL-----------SL 307 (400)
Q Consensus 243 ~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~-----------~~ 307 (400)
.........-+..|+..|.+. .+..+|.+.|-.+...+ ..-....+..+-......++++.-+ -+
T Consensus 346 s~~~~~~~lN~arLI~~Yt~~F~~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~ 425 (661)
T 2qx5_A 346 LTKKPKRDIRFANILANYTKSFRYSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGV 425 (661)
T ss_dssp ---------CHHHHHHHHHTTTTTTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCH
T ss_pred ccCCCcccccHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcch
Q ss_pred HHHHHhCCCCCch------hhHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 040367 308 YGEMLSKGIKPDV------VIYNTLFVVLFEIHQVERAFKLFDEMQRDGVAADTWTYRTFIDGLCKNSYIVEAVELFRTL 381 (400)
Q Consensus 308 ~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 381 (400)
+++.... +..+. ........-+...|+++.|+.++.-+- +++.|++++.+.
T Consensus 426 i~~~~~l-i~l~d~~~~~~~i~~~aA~~ae~~G~~~dAi~LY~La~----------------------~~d~vl~lln~~ 482 (661)
T 2qx5_A 426 IEERQPL-LHVRDEKEFLHTITEQAARRADEDGRIYDSILLYQLAE----------------------EYDIVITLVNSL 482 (661)
T ss_dssp HHHTCGG-GTCSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTT----------------------CHHHHHHHHHHH
T ss_pred HHHhhcc-cccccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhc----------------------CHHHHHHHHHHH
Q ss_pred H
Q 040367 382 R 382 (400)
Q Consensus 382 ~ 382 (400)
+
T Consensus 483 L 483 (661)
T 2qx5_A 483 L 483 (661)
T ss_dssp H
T ss_pred H
No 364
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=20.63 E-value=5.8e+02 Score=24.60 Aligned_cols=91 Identities=16% Similarity=0.124 Sum_probs=53.4
Q ss_pred HHHHHHHHhCCCh---HHHHHHHHHHHHcC----CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 040367 219 NVIMDELCKNGKM---DEASRLLDLMIQIG----VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCTHTVFSYSIL 291 (400)
Q Consensus 219 ~~l~~~~~~~~~~---~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 291 (400)
..++...+..|.. +.|.+.|+.....+ ++|+. -..+...-.+.|+.++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 3455666666663 45667777665531 33442 2223333345677666666666666532 34444567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 040367 292 INGYCKNKEIEGALSLYGEMLSK 314 (400)
Q Consensus 292 ~~~~~~~~~~~~a~~~~~~~~~~ 314 (400)
+.++....+.....+++......
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~ 787 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNP 787 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCT
T ss_pred HHHhCCCCCHHHHHHHHHHHhCC
Confidence 77777777877777777766653
No 365
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.19 E-value=1.3e+02 Score=16.78 Aligned_cols=11 Identities=27% Similarity=0.567 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 040367 336 VERAFKLFDEM 346 (400)
Q Consensus 336 ~~~a~~~~~~~ 346 (400)
++.|.+++.+|
T Consensus 38 le~AmewL~k~ 48 (54)
T 2cos_A 38 IEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44444444433
No 366
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=20.10 E-value=2.2e+02 Score=21.68 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=10.6
Q ss_pred HHhCCChHHHHHHHHHHHHcCC
Q 040367 225 LCKNGKMDEASRLLDLMIQIGV 246 (400)
Q Consensus 225 ~~~~~~~~~a~~~~~~~~~~~~ 246 (400)
.+..|+.+....+++.+.+.|.
T Consensus 9 A~~~g~~~~v~~ll~~l~~~g~ 30 (256)
T 2etb_A 9 VVSRGVPEELTGLLEYLRWNSK 30 (256)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHHcCC
Confidence 3444555555455554444443
No 367
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=20.06 E-value=74 Score=20.39 Aligned_cols=28 Identities=4% Similarity=-0.102 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 040367 52 LYTYNILINCFCKMGRVSHGFVVLGRIL 79 (400)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 79 (400)
...+...+..+...++.+++..+++.+.
T Consensus 33 V~~l~~yL~~lv~~~~lek~~~vlk~l~ 60 (97)
T 4fjo_A 33 ILQVVRYCTDLIEEKDLEKLDLVIKYMK 60 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHHH
Confidence 4445555555566677777666654443
Done!