BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040370
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 108/222 (48%), Gaps = 11/222 (4%)
Query: 8 TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
++ + + ++ N V +F+P + +++G+ ++DV T +C +P S
Sbjct: 112 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--D 167
Query: 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
++ V ++ G + V++S DG R+WD S C+++++ + F+ + +++L+
Sbjct: 168 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 226
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALT 185
D+T+KLW+ S G+ +K Y G + + A F+ T ++++S E N + IW+ T
Sbjct: 227 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQT 285
Query: 186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
E V K H P E + D++++ WK
Sbjct: 286 KEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 326
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 91/214 (42%), Gaps = 13/214 (6%)
Query: 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDV--NTFQCYLSANVPEISVNGAINQ 70
F + T V SV F P+G++L + + + ++ F+ +S + IS
Sbjct: 34 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS------D 87
Query: 71 VRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD 130
V +SS + V+AS D +++WD S C++++ G + NF ++S D
Sbjct: 88 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH--SNYVFCCNFNPQSNLIVSGSFD 145
Query: 131 STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVA 190
+V++W+V +G+ +K H+ FN ++S IWD + + +
Sbjct: 146 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIWDTASGQCLK 202
Query: 191 KWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
+ +++ SP + D +++ W
Sbjct: 203 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 236
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 108/222 (48%), Gaps = 11/222 (4%)
Query: 8 TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
++ + + ++ N V +F+P + +++G+ ++DV T +C +P S
Sbjct: 101 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--D 156
Query: 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
++ V ++ G + V++S DG R+WD S C+++++ + F+ + +++L+
Sbjct: 157 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 215
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALT 185
D+T+KLW+ S G+ +K Y G + + A F+ T ++++S E N + IW+ T
Sbjct: 216 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQT 274
Query: 186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
E V K H P E + D++++ WK
Sbjct: 275 KEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 91/214 (42%), Gaps = 13/214 (6%)
Query: 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDV--NTFQCYLSANVPEISVNGAINQ 70
F + T V SV F P+G++L + + + ++ F+ +S + I+
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGISD 76
Query: 71 VRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD 130
V +SS + V+AS D +++WD S C++++ G + NF ++S D
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH--SNYVFCCNFNPQSNLIVSGSFD 134
Query: 131 STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVA 190
+V++W+V +G+ +K H+ FN ++S IWD + + +
Sbjct: 135 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIWDTASGQCLK 191
Query: 191 KWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
+ +++ SP + D +++ W
Sbjct: 192 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 108/222 (48%), Gaps = 11/222 (4%)
Query: 8 TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
++ + + ++ N V +F+P + +++G+ ++DV T +C +P S
Sbjct: 95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--D 150
Query: 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
++ V ++ G + V++S DG R+WD S C+++++ + F+ + +++L+
Sbjct: 151 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 209
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALT 185
D+T+KLW+ S G+ +K Y G + + A F+ T ++++S E N + IW+ T
Sbjct: 210 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQT 268
Query: 186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
E V K H P E + D++++ WK
Sbjct: 269 KEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 309
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 91/214 (42%), Gaps = 13/214 (6%)
Query: 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDV--NTFQCYLSANVPEISVNGAINQ 70
F + T V SV F P+G++L + + + ++ F+ +S + IS
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS------D 70
Query: 71 VRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD 130
V +SS + V+AS D +++WD S C++++ G + NF ++S D
Sbjct: 71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH--SNYVFCCNFNPQSNLIVSGSFD 128
Query: 131 STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVA 190
+V++W+V +G+ +K H+ FN ++S IWD + + +
Sbjct: 129 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIWDTASGQCLK 185
Query: 191 KWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
+ +++ SP + D +++ W
Sbjct: 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 108/222 (48%), Gaps = 11/222 (4%)
Query: 8 TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
++ + + ++ N V +F+P + +++G+ ++DV T +C +P S
Sbjct: 95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--D 150
Query: 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
++ V ++ G + V++S DG R+WD S C+++++ + F+ + +++L+
Sbjct: 151 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 209
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALT 185
D+T+KLW+ S G+ +K Y G + + A F+ T ++++S E N + IW+ T
Sbjct: 210 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQT 268
Query: 186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
E V K H P E + D++++ WK
Sbjct: 269 KEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 309
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 91/214 (42%), Gaps = 13/214 (6%)
Query: 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDV--NTFQCYLSANVPEISVNGAINQ 70
F + T V SV F P+G++L + + + ++ F+ +S + IS
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS------D 70
Query: 71 VRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD 130
V +SS + V+AS D +++WD S C++++ G + NF ++S D
Sbjct: 71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH--SNYVFCCNFNPQSNLIVSGSFD 128
Query: 131 STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVA 190
+V++W+V +G+ +K H+ FN ++S IWD + + +
Sbjct: 129 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIWDTASGQCLK 185
Query: 191 KWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
+ +++ SP + D +++ W
Sbjct: 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 108/222 (48%), Gaps = 11/222 (4%)
Query: 8 TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
++ + + ++ N V +F+P + +++G+ ++DV T +C +P S
Sbjct: 96 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--D 151
Query: 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
++ V ++ G + V++S DG R+WD S C+++++ + F+ + +++L+
Sbjct: 152 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 210
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALT 185
D+T+KLW+ S G+ +K Y G + + A F+ T ++++S E N + IW+ T
Sbjct: 211 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQT 269
Query: 186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
E V K H P E + D++++ WK
Sbjct: 270 KEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 310
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 91/214 (42%), Gaps = 13/214 (6%)
Query: 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDV--NTFQCYLSANVPEISVNGAINQ 70
F + T V SV F P+G++L + + + ++ F+ +S + IS
Sbjct: 18 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS------D 71
Query: 71 VRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD 130
V +SS + V+AS D +++WD S C++++ G + NF ++S D
Sbjct: 72 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH--SNYVFCCNFNPQSNLIVSGSFD 129
Query: 131 STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVA 190
+V++W+V +G+ +K H+ FN ++S IWD + + +
Sbjct: 130 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIWDTASGQCLK 186
Query: 191 KWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
+ +++ SP + D +++ W
Sbjct: 187 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 220
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 108/222 (48%), Gaps = 11/222 (4%)
Query: 8 TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
++ + + ++ N V +F+P + +++G+ ++DV T +C +P S
Sbjct: 94 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--D 149
Query: 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
++ V ++ G + V++S DG R+WD S C+++++ + F+ + +++L+
Sbjct: 150 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 208
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALT 185
D+T+KLW+ S G+ +K Y G + + A F+ T ++++S E N + IW+ T
Sbjct: 209 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQT 267
Query: 186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
E V K H P E + D++++ WK
Sbjct: 268 KEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 308
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 91/214 (42%), Gaps = 13/214 (6%)
Query: 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDV--NTFQCYLSANVPEISVNGAINQ 70
F + T V SV F P+G++L + + + ++ F+ +S + IS
Sbjct: 16 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS------D 69
Query: 71 VRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD 130
V +SS + V+AS D +++WD S C++++ G + NF ++S D
Sbjct: 70 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH--SNYVFCCNFNPQSNLIVSGSFD 127
Query: 131 STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVA 190
+V++W+V +G+ +K H+ FN ++S IWD + + +
Sbjct: 128 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIWDTASGQCLK 184
Query: 191 KWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
+ +++ SP + D +++ W
Sbjct: 185 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 218
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 108/222 (48%), Gaps = 11/222 (4%)
Query: 8 TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
++ + + ++ N V +F+P + +++G+ ++DV T +C +P S
Sbjct: 101 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--D 156
Query: 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
++ V ++ G + V++S DG R+WD S C+++++ + F+ + +++L+
Sbjct: 157 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 215
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALT 185
D+T+KLW+ S G+ +K Y G + + A F+ T ++++S E N + IW+ T
Sbjct: 216 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQT 274
Query: 186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
E V K H P E + D++++ WK
Sbjct: 275 KEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 91/214 (42%), Gaps = 13/214 (6%)
Query: 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDV--NTFQCYLSANVPEISVNGAINQ 70
F + T V SV F P+G++L + + + ++ F+ +S + IS
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS------D 76
Query: 71 VRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD 130
V +SS + V+AS D +++WD S C++++ G + NF ++S D
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH--SNYVFCCNFNPQSNLIVSGSFD 134
Query: 131 STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVA 190
+V++W+V +G+ +K H+ FN ++S IWD + + +
Sbjct: 135 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIWDTASGQCLK 191
Query: 191 KWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
+ +++ SP + D +++ W
Sbjct: 192 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 108/222 (48%), Gaps = 11/222 (4%)
Query: 8 TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
++ + + ++ N V +F+P + +++G+ ++DV T +C +P S
Sbjct: 101 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--D 156
Query: 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
++ V ++ G + V++S DG R+WD S C+++++ + F+ + +++L+
Sbjct: 157 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 215
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALT 185
D+T+KLW+ S G+ +K Y G + + A F+ T ++++S E N + IW+ T
Sbjct: 216 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQT 274
Query: 186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
E V K H P E + D++++ WK
Sbjct: 275 KEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 91/214 (42%), Gaps = 13/214 (6%)
Query: 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDV--NTFQCYLSANVPEISVNGAINQ 70
F + T V SV F P+G++L + + + ++ F+ +S + IS
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS------D 76
Query: 71 VRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD 130
V +SS + V+AS D +++WD S C++++ G + NF ++S D
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH--SNYVFCCNFNPQSNLIVSGSFD 134
Query: 131 STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVA 190
+V++W+V +G+ +K H+ FN ++S IWD + + +
Sbjct: 135 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIWDTASGQCLK 191
Query: 191 KWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
+ +++ SP + D +++ W
Sbjct: 192 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 108/222 (48%), Gaps = 11/222 (4%)
Query: 8 TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
++ + + ++ N V +F+P + +++G+ ++DV T +C +P S
Sbjct: 100 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--D 155
Query: 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
++ V ++ G + V++S DG R+WD S C+++++ + F+ + +++L+
Sbjct: 156 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 214
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALT 185
D+T+KLW+ S G+ +K Y G + + A F+ T ++++S E N + IW+ T
Sbjct: 215 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQT 273
Query: 186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
E V K H P E + D++++ WK
Sbjct: 274 KEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 314
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 91/214 (42%), Gaps = 13/214 (6%)
Query: 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDV--NTFQCYLSANVPEISVNGAINQ 70
F + T V SV F P+G++L + + + ++ F+ +S + IS
Sbjct: 22 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS------D 75
Query: 71 VRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD 130
V +SS + V+AS D +++WD S C++++ G + NF ++S D
Sbjct: 76 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH--SNYVFCCNFNPQSNLIVSGSFD 133
Query: 131 STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVA 190
+V++W+V +G+ +K H+ FN ++S IWD + + +
Sbjct: 134 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIWDTASGQCLK 190
Query: 191 KWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
+ +++ SP + D +++ W
Sbjct: 191 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 224
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 103/221 (46%), Gaps = 9/221 (4%)
Query: 8 TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
++ + + ++ N V +F+P + +++G+ ++DV T +C +P S
Sbjct: 98 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--D 153
Query: 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
++ V ++ G + V++S DG R+WD S C+++++ + F+ + +++L+
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 212
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA 186
D+T+KLW+ S G+ +K Y G + + A F+ T + N + IW+ T
Sbjct: 213 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 272
Query: 187 EKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
E V K H P E + D++++ WK
Sbjct: 273 EIVQKLQG-HTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 94/224 (41%), Gaps = 13/224 (5%)
Query: 3 DFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDV--NTFQCYLSANVP 60
+F K F + T V SV F P+G++L A + + ++ F+ +S +
Sbjct: 10 EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 61 EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD 120
IS V +SS + V+AS D +++WD S C++++ G + NF
Sbjct: 70 GIS------DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH--SNYVFCCNFNPQ 121
Query: 121 QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI 180
++S D +V++W+V +G+ +K H+ FN ++S I
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVS-SSYDGLCRI 178
Query: 181 WDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
WD + + + + +++ SP + D +++ W
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 108/222 (48%), Gaps = 11/222 (4%)
Query: 8 TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
++ + + ++ N V +F+P + +++G+ ++DV T +C +P S
Sbjct: 91 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--D 146
Query: 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
++ V ++ G + V++S DG R+WD S C+++++ + F+ + +++L+
Sbjct: 147 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 205
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALT 185
D+T+KLW+ S G+ +K Y G + + A F+ T ++++S E N + IW+ T
Sbjct: 206 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQT 264
Query: 186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
E V K H P E + D++++ WK
Sbjct: 265 KEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 305
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 91/214 (42%), Gaps = 13/214 (6%)
Query: 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDV--NTFQCYLSANVPEISVNGAINQ 70
F + T V SV F P+G++L + + + ++ F+ +S + IS
Sbjct: 13 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS------D 66
Query: 71 VRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD 130
V +SS + V+AS D +++WD S C++++ G + NF ++S D
Sbjct: 67 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH--SNYVFCCNFNPQSNLIVSGSFD 124
Query: 131 STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVA 190
+V++W+V +G+ +K H+ FN ++S IWD + + +
Sbjct: 125 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIWDTASGQCLK 181
Query: 191 KWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
+ +++ SP + D +++ W
Sbjct: 182 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 215
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 107/222 (48%), Gaps = 11/222 (4%)
Query: 8 TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
++ + + ++ N V +F+P + +++G+ ++DV T C +P S
Sbjct: 98 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL--KTLPAHS--D 153
Query: 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
++ V ++ G + V++S DG R+WD S C+++++ + F+ + +++L+
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 212
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALT 185
D+T+KLW+ S G+ +K Y G + + A F+ T ++++S E N + IW+ T
Sbjct: 213 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNMVYIWNLQT 271
Query: 186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
E V K H P E + D++++ WK
Sbjct: 272 KEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 90/214 (42%), Gaps = 13/214 (6%)
Query: 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDV--NTFQCYLSANVPEISVNGAINQ 70
F + T V SV F P+G++L + + + ++ F+ +S + IS
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS------D 73
Query: 71 VRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD 130
V +SS + V+AS D +++WD S C++++ G + NF ++S D
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH--SNYVFCCNFNPQSNLIVSGSFD 131
Query: 131 STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVA 190
+V++W+V +G +K H+ FN ++S IWD + + +
Sbjct: 132 ESVRIWDVKTGMCLKTL--PAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIWDTASGQCLK 188
Query: 191 KWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
+ +++ SP + D +++ W
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 106/219 (48%), Gaps = 11/219 (5%)
Query: 11 RAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAIN 69
+ + ++ N V +F+P + +++G+ ++DV T +C +P S ++
Sbjct: 122 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--DPVS 177
Query: 70 QVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK 129
V ++ G + V++S DG R+WD S C+++++ + F+ + +++L+
Sbjct: 178 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATL 236
Query: 130 DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALTAEK 188
D+T+KLW+ S G+ +K Y G + + A F+ T ++++S E N + IW+ T E
Sbjct: 237 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQTKEI 295
Query: 189 VAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
V K H P E + D++++ WK
Sbjct: 296 VQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 333
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 91/214 (42%), Gaps = 13/214 (6%)
Query: 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDV--NTFQCYLSANVPEISVNGAINQ 70
F + T V SV F P+G++L + + + ++ F+ +S + I+
Sbjct: 41 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGISD 94
Query: 71 VRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD 130
V +SS + V+AS D +++WD S C++++ G + NF ++S D
Sbjct: 95 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH--SNYVFCCNFNPQSNLIVSGSFD 152
Query: 131 STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVA 190
+V++W+V +G+ +K H+ FN ++S IWD + + +
Sbjct: 153 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIWDTASGQCLK 209
Query: 191 KWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
+ +++ SP + D +++ W
Sbjct: 210 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 243
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 106/219 (48%), Gaps = 11/219 (5%)
Query: 11 RAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAIN 69
+ + ++ N V +F+P + +++G+ ++DV T +C +P S ++
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--DPVS 175
Query: 70 QVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK 129
V ++ G + V++S DG R+WD S C+++++ + F+ + +++L+
Sbjct: 176 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATL 234
Query: 130 DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALTAEK 188
D+T+KLW+ S G+ +K Y G + + A F+ T ++++S E N + IW+ T E
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQTKEI 293
Query: 189 VAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
V K H P E + D++++ WK
Sbjct: 294 VQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 91/214 (42%), Gaps = 13/214 (6%)
Query: 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDV--NTFQCYLSANVPEISVNGAINQ 70
F + T V SV F P+G++L + + + ++ F+ +S + I+
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGISD 92
Query: 71 VRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD 130
V +SS + V+AS D +++WD S C++++ G + NF ++S D
Sbjct: 93 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH--SNYVFCCNFNPQSNLIVSGSFD 150
Query: 131 STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVA 190
+V++W+V +G+ +K H+ FN ++S IWD + + +
Sbjct: 151 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIWDTASGQCLK 207
Query: 191 KWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
+ +++ SP + D +++ W
Sbjct: 208 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 92/185 (49%), Gaps = 6/185 (3%)
Query: 8 TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
++ + + ++ N V +F+P + +++G+ ++DV T +C +P S
Sbjct: 98 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--D 153
Query: 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
++ V ++ G + V++S DG R+WD S C+++++ + F+ + +++L+
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 212
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA 186
D+T+KLW+ S G+ +K Y G + + A F+ T + N + IW+ T
Sbjct: 213 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 272
Query: 187 EKVAK 191
E V K
Sbjct: 273 EIVQK 277
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 13/224 (5%)
Query: 3 DFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDV--NTFQCYLSANVP 60
+F K F + T V SV F P+G++L + + + ++ F+ +S +
Sbjct: 10 EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 61 EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD 120
IS V +SS + V+AS D +++WD S C++++ G + NF
Sbjct: 70 GIS------DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH--SNYVFCCNFNPQ 121
Query: 121 QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI 180
++S D +V++W+V +G+ +K H+ FN ++S I
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVS-SSYDGLCRI 178
Query: 181 WDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
WD + + + + +++ SP + D +++ W
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 61/135 (45%), Gaps = 15/135 (11%)
Query: 11 RAFRVIQDTHN--VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAI 68
+ + + D N V V F P+G ++LA T L+D + +C + G
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK-------TYTGHK 237
Query: 69 NQ-----VRYSSTGGMY-VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR 122
N+ +S TGG + V+ S+D + +W+ + V+ + G +T+ + T++
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 297
Query: 123 FVLSCGKDSTVKLWE 137
+ D T+KL++
Sbjct: 298 ASAALENDKTIKLFK 312
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 92/185 (49%), Gaps = 6/185 (3%)
Query: 8 TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
++ + + ++ N V +F+P + +++G+ ++DV T +C +P S
Sbjct: 98 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--D 153
Query: 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
++ V ++ G + V++S DG R+WD S C+++++ + F+ + +++L+
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 212
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA 186
D+T+KLW+ S G+ +K Y G + + A F+ T + N + IW+ T
Sbjct: 213 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 272
Query: 187 EKVAK 191
E V K
Sbjct: 273 EIVQK 277
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 13/224 (5%)
Query: 3 DFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDV--NTFQCYLSANVP 60
+F K F + T V SV F P+G++L + + + ++ F+ +S +
Sbjct: 10 EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 61 EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD 120
IS V +SS + V+AS D +++WD S C++++ G + NF
Sbjct: 70 GIS------DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH--SNYVFCCNFNPQ 121
Query: 121 QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI 180
++S D +V++W+V +G+ +K H+ FN ++S I
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVS-SSYDGLCRI 178
Query: 181 WDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
WD + + + + +++ SP + D +++ W
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 61/135 (45%), Gaps = 15/135 (11%)
Query: 11 RAFRVIQDTHN--VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAI 68
+ + + D N V V F P+G ++LA T L+D + +C + G
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-------YTGHK 237
Query: 69 NQ-----VRYSSTGGMY-VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR 122
N+ +S TGG + V+ S+D + +W+ + V+ + G +T+ + T++
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 297
Query: 123 FVLSCGKDSTVKLWE 137
+ D T+KL++
Sbjct: 298 ASAALENDKTIKLYK 312
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 106/222 (47%), Gaps = 11/222 (4%)
Query: 8 TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
++ + + ++ N V +F+P + +++G+ ++DV T C +P S
Sbjct: 98 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL--KTLPAHS--D 153
Query: 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
++ V ++ G + V++S DG R+WD S C+++++ + F+ + +++L+
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 212
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALT 185
D+ +KLW+ S G+ +K Y G + + A F+ T ++++S E N + IW+ T
Sbjct: 213 ATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNMVYIWNLQT 271
Query: 186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
E V K H P E + D++++ WK
Sbjct: 272 KEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 89/214 (41%), Gaps = 13/214 (6%)
Query: 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDV--NTFQCYLSANVPEISVNGAINQ 70
F + T V SV F P+G++L + + + ++ F+ +S + IS
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS------D 73
Query: 71 VRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD 130
V +SS + V+AS D +++WD S C++++ G + NF ++S D
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH--SNYVFCCNFNPQSNLIVSGSFD 131
Query: 131 STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVA 190
+V++W+V +G +K H+ FN ++S IWD + + +
Sbjct: 132 ESVRIWDVKTGMCLKTL--PAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIWDTASGQCLK 188
Query: 191 KWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
+ +++ SP + D ++ W
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLW 222
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 91/229 (39%), Gaps = 31/229 (13%)
Query: 20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM 79
++ S+ + PSGD L++G+ ++D+ T QC L+ +S+ + V S G
Sbjct: 166 QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT-----LSIEDGVTTVAVSPGDGK 220
Query: 80 YVTA-SKDGAIRLWDGVSANCVRSIVGAH--GTAEATSAN---FTKDQRFVLSCGKDSTV 133
Y+ A S D A+R+WD + V + + GT S FT+D + V+S D +V
Sbjct: 221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280
Query: 134 KLWEV------------SSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIW 181
KLW + +SG Y+G H +E++LS ++ W
Sbjct: 281 KLWNLQNANNKSDSKTPNSGTCEVTYIG--HKDFVLSVATTQNDEYILS-GSKDRGVLFW 337
Query: 182 DALTAEKVAKWSSNH-----IGAPRWIEHSPAEAAFITCGTDRSVRFWK 225
D + + + + P F T D R WK
Sbjct: 338 DKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 89/221 (40%), Gaps = 23/221 (10%)
Query: 22 VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV 81
+RSV F P G FL G + + ++D+ + + E I + Y +G V
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD----IYSLDYFPSGDKLV 181
Query: 82 TASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG 141
+ S D +R+WD + C ++ G T A D +++ + D V++W+ +G
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIEDGV--TTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239
Query: 142 RLVKQY-----LGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNH 196
LV++ G H + VF + V+S + +W+ A + + +
Sbjct: 240 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS-GSLDRSVKLWNLQNANNKSDSKTPN 298
Query: 197 IGAPR--WIEH--------SPAEAAFITCGT-DRSVRFWKE 226
G +I H + +I G+ DR V FW +
Sbjct: 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 25/181 (13%)
Query: 20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM 79
HNV SVS P+GD +++ + +++V T C + + VR + G +
Sbjct: 193 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT----GHREWVRMVRPNQDGTL 248
Query: 80 YVTASKDGAIRLWDGVSANCV------RSIVGA---------HGTAEATSANFTKDQR-- 122
+ S D +R+W + C R +V +EAT + K +
Sbjct: 249 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG 308
Query: 123 -FVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIW 181
F+LS +D T+K+W+VS+G + +G H +F+ +F+LS + + +W
Sbjct: 309 PFLLSGSRDKTIKMWDVSTGMCLMTLVG--HDNWVRGVLFHSGGKFILSCADDKT-LRVW 365
Query: 182 D 182
D
Sbjct: 366 D 366
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 22 VRSVSFHPSGDFLLAGTDHPIAHLYDVNT--FQCYLSANVPEISVNGAINQVRYSSTGGM 79
V V FHP +++ ++ ++D T F+ L + ++ + + +G +
Sbjct: 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH------TDSVQDISFDHSGKL 164
Query: 80 YVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVS 139
+ S D I+LWD C+R++ G + S D ++S +D T+K+WEV
Sbjct: 165 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH--IVSASRDKTIKMWEVQ 222
Query: 140 SGRLVKQYLG 149
+G VK + G
Sbjct: 223 TGYCVKTFTG 232
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG 78
T +V+ +SF SG L + + L+D F+C + + + ++ V G
Sbjct: 150 TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH----GHDHNVSSVSIMPNGD 205
Query: 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV 138
V+AS+D I++W+ + CV++ G N +D + SC D TV++W V
Sbjct: 206 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN--QDGTLIASCSNDQTVRVWVV 263
Query: 139 SS 140
++
Sbjct: 264 AT 265
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 6/157 (3%)
Query: 68 INQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC 127
+ +V + + V+AS+D I++WD + + R++ G + + S F + + SC
Sbjct: 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDIS--FDHSGKLLASC 168
Query: 128 GKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE 187
D T+KLW+ ++ G H + N S D+ I +W+ T
Sbjct: 169 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT---IKMWEVQTGY 225
Query: 188 KVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
V + + H R + + +C D++VR W
Sbjct: 226 CVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 22 VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV 81
VR V + G +++G + ++D T C + + G N+V G++V
Sbjct: 242 VRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT-------LQGHTNRVYSLQFDGIHV 292
Query: 82 -TASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS 140
+ S D +IR+WD + NC+ ++ G TS KD ++S DSTVK+W++ +
Sbjct: 293 VSGSLDTSIRVWDVETGNCIHTLTGHQ---SLTSGMELKDN-ILVSGNADSTVKIWDIKT 348
Query: 141 GRLVKQYLGATHTQLRFQAV-FNDTEEFVLSIDEPSNEIVIWDALTAE 187
G+ ++ G Q + FN + FV++ + + +WD T E
Sbjct: 349 GQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGT-VKLWDLKTGE 393
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM 79
H R S G +++G+ ++DV T C + + +G +
Sbjct: 278 HTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG------MELKDNI 331
Query: 80 YVTASKDGAIRLWDGVSANCVRSIVGAHGTAEA-TSANFTKDQRFVLSCGKDSTVKLWEV 138
V+ + D +++WD + C++++ G + A T F K+ FV++ D TVKLW++
Sbjct: 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDL 389
Query: 139 SSGRLVKQYL 148
+G ++ +
Sbjct: 390 KTGEFIRNLV 399
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 77 GGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLW 136
G V+ S D +++W V+ C+R++VG G ++ ++S D T+K+W
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR----DNIIISGSTDRTLKVW 184
Query: 137 EVSSGRLVKQYLGATHT 153
+G + G T T
Sbjct: 185 NAETGECIHTLYGHTST 201
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/170 (17%), Positives = 78/170 (45%), Gaps = 20/170 (11%)
Query: 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAI--NQVRYS 74
D H + + F G+ +++G+D ++ T +C + + G + +Q+R
Sbjct: 117 HDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTL----VGHTGGVWSSQMR-- 168
Query: 75 STGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVK 134
+ ++ S D +++W+ + C+ ++ G T + ++ V+S +D+T++
Sbjct: 169 --DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLR 222
Query: 135 LWEVSSGRLVKQYLG----ATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI 180
+W++ +G+ + +G Q + V + +F++ + +P E +
Sbjct: 223 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCL 272
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 9/106 (8%)
Query: 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS 140
V+ S+D +R+WD + C+ ++G A + D R V+S D VK+W+ +
Sbjct: 213 VSGSRDATLRVWDIETGQCLHVLMGH--VAAVRCVQY--DGRRVVSGAYDFMVKVWDPET 268
Query: 141 GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA 186
+ G HT + F+ S+D I +WD T
Sbjct: 269 ETCLHTLQG--HTNRVYSLQFDGIHVVSGSLD---TSIRVWDVETG 309
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 66 GAINQVRYSSTG-GMYVTASKDGAIRLWDGVSANCVRSIVGAHG-TAEATSANFTKDQRF 123
AIN++++ + ++ SKD A+RLW+ + V G G E SA++
Sbjct: 111 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 170
Query: 124 VLSCGKDSTVKLWEVSSGRLV 144
++SCG D ++KLW ++S R++
Sbjct: 171 IMSCGMDHSLKLWRINSKRMM 191
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 47 DVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGA 106
++ Q Y+ A+ E A +S + V S+ G IR+ + ++ C++ VG
Sbjct: 51 EIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR-GIIRIINPITMQCIKHYVG- 108
Query: 107 HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA 150
HG A +D +LS KD ++LW + + LV + G
Sbjct: 109 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV 152
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 66 GAINQVRYSSTG-GMYVTASKDGAIRLWDGVSANCVRSIVGAHG-TAEATSANFTKDQRF 123
AIN++++ + ++ SKD A+RLW+ + V G G E SA++
Sbjct: 115 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 174
Query: 124 VLSCGKDSTVKLWEVSSGRLV 144
++SCG D ++KLW ++S R++
Sbjct: 175 IMSCGMDHSLKLWRINSKRMM 195
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 47 DVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGA 106
++ Q Y+ A+ E A +S + V S+ G IR+ + ++ C++ VG
Sbjct: 55 EIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR-GIIRIINPITMQCIKHYVG- 112
Query: 107 HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA 150
HG A +D +LS KD ++LW + + LV + G
Sbjct: 113 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV 156
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 66 GAINQVRYSSTG-GMYVTASKDGAIRLWDGVSANCVRSIVGAHG-TAEATSANFTKDQRF 123
AIN++++ + ++ SKD A+RLW+ + V G G E SA++
Sbjct: 116 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 175
Query: 124 VLSCGKDSTVKLWEVSSGRLV 144
++SCG D ++KLW ++S R++
Sbjct: 176 IMSCGMDHSLKLWRINSKRMM 196
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 47 DVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGA 106
++ Q Y+ A+ E A +S + V S+ G IR+ + ++ C++ VG
Sbjct: 56 EIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR-GIIRIINPITMQCIKHYVG- 113
Query: 107 HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA 150
HG A +D +LS KD ++LW + + LV + G
Sbjct: 114 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV 157
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 66 GAINQVRYSSTG-GMYVTASKDGAIRLWDGVSANCVRSIVGAHG-TAEATSANFTKDQRF 123
AIN++++ + ++ SKD A+RLW+ + V G G E SA++
Sbjct: 115 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 174
Query: 124 VLSCGKDSTVKLWEVSSGRLV 144
++SCG D ++KLW ++S R++
Sbjct: 175 IMSCGMDHSLKLWRINSKRMM 195
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 47 DVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGA 106
++ Q Y+ A+ E A +S + V S+ G IR+ + ++ C++ VG
Sbjct: 55 EIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR-GIIRIINPITMQCIKHYVG- 112
Query: 107 HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA 150
HG A +D +LS KD ++LW + + LV + G
Sbjct: 113 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV 156
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 66 GAINQVRYSSTG-GMYVTASKDGAIRLWDGVSANCVRSIVGAHG-TAEATSANFTKDQRF 123
AIN++++ + ++ SKD A+RLW+ + V G G E SA++
Sbjct: 152 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 211
Query: 124 VLSCGKDSTVKLWEVSSGRLV 144
++SCG D ++KLW ++S R++
Sbjct: 212 IMSCGMDHSLKLWRINSKRMM 232
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 47 DVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGA 106
++ Q Y+ A+ E A +S + V S+ G IR+ + ++ C++ VG
Sbjct: 92 EIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR-GIIRIINPITMQCIKHYVG- 149
Query: 107 HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLG 149
HG A +D +LS KD ++LW + + LV + G
Sbjct: 150 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 192
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS 140
V+ +D I++WD + C R + G G+ D+R +++ DSTV++W+V++
Sbjct: 147 VSGLRDNTIKIWDKNTLECKRILTGHTGSVLC----LQYDERVIITGSSDSTVRVWDVNT 202
Query: 141 GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWD 182
G ++ + H + FN+ S D I +WD
Sbjct: 203 GEMLNTLIH--HCEAVLHLRFNNGMMVTCSKDR---SIAVWD 239
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 34 LLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD 93
++ G+ ++DVNT + + I A+ +R+++ GM VT SKD +I +WD
Sbjct: 186 IITGSSDSTVRVWDVNTGEMLNTL----IHHCEAVLHLRFNN--GMMVTCSKDRSIAVWD 239
Query: 94 GVSAN--CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT 151
S +R ++ H A +F D ++++S D T+K+W S+ V+ G
Sbjct: 240 MASPTDITLRRVLVGH-RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNG-- 294
Query: 152 HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWD 182
R A + V+S N I +WD
Sbjct: 295 --HKRGIACLQYRDRLVVS-GSSDNTIRLWD 322
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 16/114 (14%)
Query: 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV 138
+ V+ S D IRLWD C+R + G E D + ++S D +K+W++
Sbjct: 308 LVVSGSSDNTIRLWDIECGACLRVLEG----HEELVRCIRFDNKRIVSGAYDGKIKVWDL 363
Query: 139 --------SSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL 184
+G L + L H+ F+ F +EF + + I+IWD L
Sbjct: 364 VAALDPRAPAGTLCLRTL-VEHSGRVFRLQF---DEFQIVSSSHDDTILIWDFL 413
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS 140
V+AS D I++W+ + VR++ G + A R V+S D+T++LW++
Sbjct: 270 VSASGDRTIKVWNTSTCEFVRTLNGH----KRGIACLQYRDRLVVSGSSDNTIRLWDIEC 325
Query: 141 GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA 186
G ++ G H +L F++ + D +I +WD + A
Sbjct: 326 GACLRVLEG--HEELVRCIRFDNKRIVSGAYD---GKIKVWDLVAA 366
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 22/112 (19%)
Query: 120 DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIV 179
D + ++S +D+T+K+W+ ++ + G T + L Q +E V+ + +
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-----DERVIITGSSDSTVR 196
Query: 180 IWDALTAEKVAKWSSNHIGAPRWIEHSPA-------EAAFITCGTDRSVRFW 224
+WD T E + I H A +TC DRS+ W
Sbjct: 197 VWDVNTGEMLNT----------LIHHCEAVLHLRFNNGMMVTCSKDRSIAVW 238
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 68 INQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC 127
+ V SS G ++ S DG +RLWD + R VG T + S F+ D R ++S
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGH--TKDVLSVAFSLDNRQIVSA 490
Query: 128 GKDSTVKLW 136
+D T+KLW
Sbjct: 491 SRDRTIKLW 499
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 81 VTASKDGAIRLWDGVSANC-VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVS 139
V+AS D +++W+ +NC +RS + H T ++ + D S GKD V LW+++
Sbjct: 535 VSASWDKTVKVWN--LSNCKLRSTLAGH-TGYVSTVAVSPDGSLCASGGKDGVVLLWDLA 591
Query: 140 SGR 142
G+
Sbjct: 592 EGK 594
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 17/156 (10%)
Query: 3 DFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEI 62
D + A+R R+ +H V V G F L+G+ L+D L+A V
Sbjct: 416 DKAYGVAQR--RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD-------LAAGVSTR 466
Query: 63 SVNG---AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIV-GAHGTAEATS-ANF 117
G + V +S V+AS+D I+LW+ + C +I G G + S F
Sbjct: 467 RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCVRF 525
Query: 118 TKD--QRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT 151
+ + Q ++S D TVK+W +S+ +L G T
Sbjct: 526 SPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT 561
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 66 GAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATS---ANFTKDQR 122
G ++ V S G + + KDG + LWD + S+ EA S A R
Sbjct: 562 GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL-------EANSVIHALCFSPNR 614
Query: 123 FVLSCGKDSTVKLWEVSSGRLVK 145
+ L + +K+W++ S +V+
Sbjct: 615 YWLCAATEHGIKIWDLESKSIVE 637
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 92/224 (41%), Gaps = 28/224 (12%)
Query: 10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAIN 69
K R+ + +VR V+F P G + + +D L++ N Q + SV G
Sbjct: 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWG--- 62
Query: 70 QVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK 129
V +S G +AS D ++LW+ + ++++ G + + F+ D + + S
Sbjct: 63 -VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVA--FSPDGQTIASASD 118
Query: 130 DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWD------- 182
D TVKLW +G+L++ G H+ + F+ + + S + + +W+
Sbjct: 119 DKTVKLWN-RNGQLLQTLTG--HSSSVWGVAFSPDGQTIASASD-DKTVKLWNRNGQLLQ 174
Query: 183 ALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226
LT + W + SP + D++V+ W
Sbjct: 175 TLTGHSSSVWG---------VAFSPDGQTIASASDDKTVKLWNR 209
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 89/205 (43%), Gaps = 14/205 (6%)
Query: 22 VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV 81
VR V+F P G + + +D L++ N Q + SVNG V + G
Sbjct: 224 VRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNG----VAFRPDGQTIA 278
Query: 82 TASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG 141
+AS D ++LW+ + ++++ G + + F+ D + + S D TVKLW +G
Sbjct: 279 SASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA--FSPDGQTIASASDDKTVKLWN-RNG 334
Query: 142 RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPR 201
+ ++ G H+ + F+ + + S + + +W+ ++ + + H + R
Sbjct: 335 QHLQTLTG--HSSSVWGVAFSPDGQTIASASD-DKTVKLWNR--NGQLLQTLTGHSSSVR 389
Query: 202 WIEHSPAEAAFITCGTDRSVRFWKE 226
+ SP + D++V+ W
Sbjct: 390 GVAFSPDGQTIASASDDKTVKLWNR 414
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 90/205 (43%), Gaps = 14/205 (6%)
Query: 22 VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV 81
V V+F P G + + +D L++ N Q + SV G V +S G
Sbjct: 347 VWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRG----VAFSPDGQTIA 401
Query: 82 TASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG 141
+AS D ++LW+ + ++++ G + + F+ D + + S D TVKLW +G
Sbjct: 402 SASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA--FSPDDQTIASASDDKTVKLWN-RNG 457
Query: 142 RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPR 201
+L+ Q L + +R A D + + D+ + + +W+ ++ + + H + R
Sbjct: 458 QLL-QTLTGHSSSVRGVAFSPDGQTIASASDDKT--VKLWNR--NGQLLQTLTGHSSSVR 512
Query: 202 WIEHSPAEAAFITCGTDRSVRFWKE 226
+ SP + D++V+ W
Sbjct: 513 GVAFSPDGQTIASASDDKTVKLWNR 537
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 89/205 (43%), Gaps = 14/205 (6%)
Query: 22 VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV 81
V V+F P G + + +D L++ N Q + SV G V +S G
Sbjct: 60 VWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRG----VAFSPDGQTIA 114
Query: 82 TASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG 141
+AS D ++LW+ + ++++ G + + F+ D + + S D TVKLW +G
Sbjct: 115 SASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA--FSPDGQTIASASDDKTVKLWN-RNG 170
Query: 142 RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPR 201
+L++ G H+ + F+ + + S + + +W+ ++ + + H + R
Sbjct: 171 QLLQTLTG--HSSSVWGVAFSPDGQTIASASD-DKTVKLWNR--NGQLLQTLTGHSSSVR 225
Query: 202 WIEHSPAEAAFITCGTDRSVRFWKE 226
+ SP + D++V+ W
Sbjct: 226 GVAFSPDGQTIASASDDKTVKLWNR 250
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 22 VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV 81
VR V+F P G + + +D L++ N Q + SV G V +S G
Sbjct: 470 VRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRG----VAFSPDGQTIA 524
Query: 82 TASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWE 137
+AS D ++LW+ + ++++ G + + F+ D + + S D TVKLW
Sbjct: 525 SASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA--FSPDGQTIASASSDKTVKLWN 577
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/205 (19%), Positives = 83/205 (40%), Gaps = 21/205 (10%)
Query: 33 FLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLW 92
L G+ L+D+N +C + ++N R+S + + S DG ++LW
Sbjct: 721 LLATGSSDCFLKLWDLNQKECRNTM----FGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Query: 93 DGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC------------GKDSTVKLWEVSS 140
D SAN +SI +D ++ C + + L+++ +
Sbjct: 777 DATSANERKSINVKQFFLNLEDPQ--EDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHT 834
Query: 141 GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAP 200
L+ + H+ +++ V+++ + E +W+ + KVA H+
Sbjct: 835 SGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVE--LWNTDSRSKVAD-CRGHLSWV 891
Query: 201 RWIEHSPAEAAFITCGTDRSVRFWK 225
+ SP ++F+T D+++R W+
Sbjct: 892 HGVMFSPDGSSFLTSSDDQTIRLWE 916
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 61/158 (38%), Gaps = 4/158 (2%)
Query: 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
A+ +S G + D ++++ + + I AH E F+ D RF+ +
Sbjct: 623 AVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEI-KAH-EDEVLCCAFSTDDRFIAT 680
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA 186
C D VK+W +G LV Y Q+ N + +L+ + +WD L
Sbjct: 681 CSVDKKVKIWNSMTGELVHTY-DEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWD-LNQ 738
Query: 187 EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
++ H + SP + +C D +++ W
Sbjct: 739 KECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRF 157
N R +V H A A F++D + + SCG D T+++++ +G + + H
Sbjct: 611 NLSRLVVRPHTDA-VYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEI--KAHEDEVL 667
Query: 158 QAVFNDTEEFV--LSIDEPSNEIVIWDALTAEKV 189
F+ + F+ S+D+ ++ IW+++T E V
Sbjct: 668 CCAFSTDDRFIATCSVDK---KVKIWNSMTGELV 698
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 98/233 (42%), Gaps = 23/233 (9%)
Query: 7 ATAKRAFRVIQDTHNVRSVSF-HPSGDFLLA-GTDHPIAHLYDVNTFQCYLSANVPEISV 64
AT K + + V F + S LLA G++ L+D+N +C +
Sbjct: 694 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM----FGH 749
Query: 65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFV 124
++N R+S + + S DG +RLWD SAN +SI +S + +D +
Sbjct: 750 TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF--LSSEDPPEDVEVI 807
Query: 125 LSC------------GKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID 172
+ C + V L+++ + L+ + H+ +++ V+++
Sbjct: 808 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS 867
Query: 173 EPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225
+ E +W+ + KVA H+ + SP ++F+T D+++R W+
Sbjct: 868 QYCVE--LWNIDSRLKVAD-CRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 917
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 4/158 (2%)
Query: 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
A+ +S G + D ++++ + + I AH E F+ D ++ +
Sbjct: 624 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI-KAH-EDEVLCCAFSSDDSYIAT 681
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA 186
C D VK+W+ ++G+LV Y Q+ N + +L+ + +WD L
Sbjct: 682 CSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD-LNQ 739
Query: 187 EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
++ H + SP + +C D ++R W
Sbjct: 740 KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 12/160 (7%)
Query: 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANF--TKDQRFV 124
A+ +++++ G +++S+D I++W+ + + V + AH + T +F +D R +
Sbjct: 1012 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV--FLQAH---QETVKDFRLLQDSR-L 1065
Query: 125 LSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL 184
LS D TVK+W V +GR+ + + T L A+ +D +F + + + +I +D L
Sbjct: 1066 LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSC-AISSDATKFSSTSADKTAKIWSFDLL 1124
Query: 185 TAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
+ K H G R S T + +R W
Sbjct: 1125 SPLHELK---GHNGCVRCSAFSLDGILLATGDDNGEIRIW 1161
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 65 NGAINQVRYSSTGGMYVTASKDGAIRLW---DGVSANCVRSIVGAHGTAE----ATSANF 117
NG + +S G + T +G IR+W DG + I GTA T F
Sbjct: 1134 NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCF 1193
Query: 118 TKDQRFVLSCGKDSTVKLWEVSSG 141
+ D + ++S G +K W V++G
Sbjct: 1194 SPDSKTLVSAG--GYLKWWNVATG 1215
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 11/129 (8%)
Query: 61 EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD 120
E+ + + TG +Y+ I+ N R +V H T A F++D
Sbjct: 582 EVYRQAKLQAKQEGDTGRLYLEWINKKTIK-------NLSRLVVRPH-TDAVYHACFSQD 633
Query: 121 QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI 180
+ + SCG D T+++++ +G K H F+ + ++ + ++ I
Sbjct: 634 GQRIASCGADKTLQVFKAETGE--KLLDIKAHEDEVLCCAFSSDDSYIATC-SADKKVKI 690
Query: 181 WDALTAEKV 189
WD+ T + V
Sbjct: 691 WDSATGKLV 699
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 7/118 (5%)
Query: 73 YSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFT-KDQRFVLSCG-KD 130
+SS T S D +++WD + V + + + +FT K +L+ G D
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTY--DEHSEQVNCCHFTNKSNHLLLATGSND 729
Query: 131 STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK 188
+KLW+++ G HT F+ +E + S + +WD +A +
Sbjct: 730 FFLKLWDLNQKECRNTMFG--HTNSVNHCRFSPDDELLASC-SADGTLRLWDVRSANE 784
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 98/233 (42%), Gaps = 23/233 (9%)
Query: 7 ATAKRAFRVIQDTHNVRSVSF-HPSGDFLLA-GTDHPIAHLYDVNTFQCYLSANVPEISV 64
AT K + + V F + S LLA G++ L+D+N +C +
Sbjct: 687 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM----FGH 742
Query: 65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFV 124
++N R+S + + S DG +RLWD SAN +SI +S + +D +
Sbjct: 743 TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF--LSSEDPPEDVEVI 800
Query: 125 LSC------------GKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID 172
+ C + V L+++ + L+ + H+ +++ V+++
Sbjct: 801 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS 860
Query: 173 EPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225
+ E +W+ + KVA H+ + SP ++F+T D+++R W+
Sbjct: 861 QYCVE--LWNIDSRLKVAD-CRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 4/158 (2%)
Query: 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
A+ +S G + D ++++ + + I AH E F+ D ++ +
Sbjct: 617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI-KAH-EDEVLCCAFSSDDSYIAT 674
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA 186
C D VK+W+ ++G+LV Y Q+ N + +L+ + +WD L
Sbjct: 675 CSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD-LNQ 732
Query: 187 EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
++ H + SP + +C D ++R W
Sbjct: 733 KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 12/160 (7%)
Query: 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANF--TKDQRFV 124
A+ +++++ G +++S+D I++W+ + + V + AH + T +F +D R +
Sbjct: 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV--FLQAH---QETVKDFRLLQDSR-L 1058
Query: 125 LSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL 184
LS D TVK+W V +GR+ + + T L A+ +D +F + + + +I +D L
Sbjct: 1059 LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSC-AISSDATKFSSTSADKTAKIWSFDLL 1117
Query: 185 TAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
+ K H G R S T + +R W
Sbjct: 1118 SPLHELK---GHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 65 NGAINQVRYSSTGGMYVTASKDGAIRLW---DGVSANCVRSIVGAHGTAE----ATSANF 117
NG + +S G + T +G IR+W DG + I GTA T F
Sbjct: 1127 NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCF 1186
Query: 118 TKDQRFVLSCGKDSTVKLWEVSSG 141
+ D + ++S G +K W V++G
Sbjct: 1187 SPDSKTLVSAG--GYLKWWNVATG 1208
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 11/129 (8%)
Query: 61 EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD 120
E+ + + TG +Y+ I+ N R +V H T A F++D
Sbjct: 575 EVYRQAKLQAKQEGDTGRLYLEWINKKTIK-------NLSRLVVRPH-TDAVYHACFSQD 626
Query: 121 QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI 180
+ + SCG D T+++++ +G K H F+ + ++ + ++ I
Sbjct: 627 GQRIASCGADKTLQVFKAETGE--KLLDIKAHEDEVLCCAFSSDDSYIATC-SADKKVKI 683
Query: 181 WDALTAEKV 189
WD+ T + V
Sbjct: 684 WDSATGKLV 692
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 7/118 (5%)
Query: 73 YSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFT-KDQRFVLSCG-KD 130
+SS T S D +++WD + V + + + +FT K +L+ G D
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTY--DEHSEQVNCCHFTNKSNHLLLATGSND 722
Query: 131 STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK 188
+KLW+++ G HT F+ +E + S + +WD +A +
Sbjct: 723 FFLKLWDLNQKECRNTMFG--HTNSVNHCRFSPDDELLASC-SADGTLRLWDVRSANE 777
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 11/135 (8%)
Query: 22 VRSVSFHPSGDFLLAGT-DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80
V V+ +G+F ++ + DH + L+++ QC + + V +S
Sbjct: 70 VSDVALSNNGNFAVSASWDHSL-RLWNLQNGQCQYKF----LGHTKDVLSVAFSPDNRQI 124
Query: 81 VTASKDGAIRLWDGVSANCVRSIV-GAHGTAEATSANFTK--DQRFVLSCGKDSTVKLWE 137
V+ +D A+R+W+ V C+ ++ GAH T + F+ D ++S G D+ VK+W+
Sbjct: 125 VSGGRDNALRVWN-VKGECMHTLSRGAH-TDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 138 VSSGRLVKQYLGATH 152
+++GRLV G T+
Sbjct: 183 LATGRLVTDLKGHTN 197
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 7 ATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
AT + + T+ V SV+ P G + +A L+D+ + + E++
Sbjct: 184 ATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEA-----LSEMAAGA 238
Query: 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHG-----TAEATSANFTKDQ 121
INQ+ +S ++ A+ + IR++D + + + + H E S ++ D
Sbjct: 239 PINQICFSPN-RYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADG 297
Query: 122 RFVLSCGKDSTVKLWEVS 139
+ S D+ +++W VS
Sbjct: 298 STLYSGYTDNVIRVWGVS 315
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 62 ISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQ 121
I +G I+ + ++ T + ++AS DG +R+W G + N G + SA++ D
Sbjct: 244 IGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH--SQSIVSASWVGDD 301
Query: 122 RFVLSCGKDSTVKLWEVSSGRLV 144
+ V+SC D +V+LW + L+
Sbjct: 302 K-VISCSMDGSVRLWSLKQNTLL 323
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 22/172 (12%)
Query: 69 NQVR---YSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVL 125
NQV +S G VT ++G +RLW+ A + +++ H A S + KD ++
Sbjct: 109 NQVTCLAWSHDGNSIVTGVENGELRLWNKTGA--LLNVLNFH-RAPIVSVKWNKDGTHII 165
Query: 126 SCGKDSTVKLWEVSSGRLVKQY----LGATHTQ---------LRFQAVFNDTEEFVLSID 172
S ++ LW V SG +++ + G + L + D ++FV I
Sbjct: 166 SMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFV--IP 223
Query: 173 EPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
P I ++ K +H G +E + ++ D ++R W
Sbjct: 224 GPKGAIFVYQITEKTPTGKLIGHH-GPISVLEFNDTNKLLLSASDDGTLRIW 274
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 80 YVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVS 139
+V GAI ++ ++G HG N T + +LS D T+++W
Sbjct: 220 FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT--NKLLLSASDDGTLRIWHGG 277
Query: 140 SGRLVKQYLGATHTQ 154
+G + G H+Q
Sbjct: 278 NGNSQNCFYG--HSQ 290
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 19/171 (11%)
Query: 65 NGAINQVRYSST-GGMYVTASKDGAIRLWD--------GVSANCVRSIVGAHGTAEATSA 115
NG + Q+ + M ++AS+D I +W G+ +R +H ++
Sbjct: 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG--HSHFVSDVV-- 93
Query: 116 NFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS 175
+ D +F LS D T++LW++++G ++++G HT+ F+ ++S
Sbjct: 94 -ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVG--HTKDVLSVAFSSDNRQIVS-GSRD 149
Query: 176 NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP--AEAAFITCGTDRSVRFW 224
I +W+ L K +H + SP + ++CG D+ V+ W
Sbjct: 150 KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 200
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 9/144 (6%)
Query: 10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAIN 69
+RA R +H V V G F L+G+ L+D+ T + + +
Sbjct: 79 QRALR--GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG----TTTRRFVGHTKDVL 132
Query: 70 QVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR--FVLSC 127
V +SS V+ S+D I+LW+ + C ++ + + F+ + ++SC
Sbjct: 133 SVAFSSDNRQIVSGSRDKTIKLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSSNPIIVSC 191
Query: 128 GKDSTVKLWEVSSGRLVKQYLGAT 151
G D VK+W +++ +L ++G T
Sbjct: 192 GWDKLVKVWNLANCKLKTNHIGHT 215
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 49 NTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHG 108
N C L N I G +N V S G + + KDG LWD + ++ G
Sbjct: 201 NLANCKLKTN--HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG--- 255
Query: 109 TAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQ 146
+ +A R+ L ++K+W++ +V +
Sbjct: 256 -GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDE 292
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 19/171 (11%)
Query: 65 NGAINQVRYSST-GGMYVTASKDGAIRLWD--------GVSANCVRSIVGAHGTAEATSA 115
NG + Q+ + M ++AS+D I +W G+ +R +H ++
Sbjct: 15 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG--HSHFVSDVV-- 70
Query: 116 NFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS 175
+ D +F LS D T++LW++++G ++++G HT+ F+ ++S
Sbjct: 71 -ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVG--HTKDVLSVAFSSDNRQIVS-GSRD 126
Query: 176 NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP--AEAAFITCGTDRSVRFW 224
I +W+ L K +H + SP + ++CG D+ V+ W
Sbjct: 127 KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 177
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 9/144 (6%)
Query: 10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAIN 69
+RA R +H V V G F L+G+ L+D+ T + + +
Sbjct: 56 QRALR--GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG----TTTRRFVGHTKDVL 109
Query: 70 QVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR--FVLSC 127
V +SS V+ S+D I+LW+ + C ++ + + F+ + ++SC
Sbjct: 110 SVAFSSDNRQIVSGSRDKTIKLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSSNPIIVSC 168
Query: 128 GKDSTVKLWEVSSGRLVKQYLGAT 151
G D VK+W +++ +L ++G T
Sbjct: 169 GWDKLVKVWNLANCKLKTNHIGHT 192
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 49 NTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHG 108
N C L N I G +N V S G + + KDG LWD + ++ G
Sbjct: 178 NLANCKLKTN--HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG--- 232
Query: 109 TAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQ 146
+ +A R+ L ++K+W++ +V +
Sbjct: 233 -GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDE 269
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 13/137 (9%)
Query: 32 DFLLAGTDHPIAHLYD-VNT-FQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI 89
++++ G D + +YD +N F LS + +G + ++Y+ GG+ V+ S D +
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQLSGH------DGGVWALKYAH-GGILVSGSTDRTV 185
Query: 90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLG 149
R+WD C G + T K+ +++++ +D+T+ +W++ V + G
Sbjct: 186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH-G 244
Query: 150 ATHTQLRFQAVFNDTEE 166
H + VF+ EE
Sbjct: 245 EEHD---YPLVFHTPEE 258
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 64 VNGAINQVR-YSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR 122
+ G + VR S G + V+ S D + +WD C+ I+ H T S + +++
Sbjct: 266 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLY-ILSGH-TDRIYSTIYDHERK 323
Query: 123 FVLSCGKDSTVKLWEVSSGRLVKQYLGAT 151
+S D+T+++W++ +G L+ G T
Sbjct: 324 RCISASMDTTIRIWDLENGELMYTLQGHT 352
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 30/154 (19%)
Query: 68 INQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSAN-FTKDQRFVLS 126
+ QV+Y+ G + + SKD + +W ++ + ++ G GT + + FTK + ++
Sbjct: 35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK---YCVT 91
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQL--------RFQAVFND--------------- 163
D ++KLW+VS+G+ V + + F A+ ++
Sbjct: 92 GSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIER 151
Query: 164 ---TEEFVLSIDEPSNEIVIWDALTAEKVAKWSS 194
T E +EP ++I+ + L A VA WS+
Sbjct: 152 DSATHELTKVSEEPIHKIITHEGLDAATVAGWST 185
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 13/137 (9%)
Query: 32 DFLLAGTDHPIAHLYD-VNT-FQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI 89
++++ G D +YD +N F LS + +G + ++Y+ GG+ V+ S D +
Sbjct: 133 NYVITGADDKXIRVYDSINKKFLLQLSGH------DGGVWALKYAH-GGILVSGSTDRTV 185
Query: 90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLG 149
R+WD C G + T K+ +++++ +D+T+ +W++ V + G
Sbjct: 186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH-G 244
Query: 150 ATHTQLRFQAVFNDTEE 166
H + VF+ EE
Sbjct: 245 EEHD---YPLVFHTPEE 258
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 74 SSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTV 133
S G + V+ S D + +WD C+ I+ H T S + +++ +S D+T+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQXKCLY-ILSGH-TDRIYSTIYDHERKRCISASXDTTI 334
Query: 134 KLWEVSSGRLVKQYLGAT 151
++W++ +G L G T
Sbjct: 335 RIWDLENGELXYTLQGHT 352
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 13/167 (7%)
Query: 34 LLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD 93
+L +D L++++ + + + + + ++ V S+G V+ SKD I++WD
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155
Query: 94 GVSANCVRSIVGAHGT-AEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQ------ 146
++ V S AH +A+ KD F LSC +D+ + LW+ + Q
Sbjct: 156 -LAQQVVLSSYRAHAAQVTCVAASPHKDSVF-LSCSEDNRILLWDTRCPKPASQIGCSAP 213
Query: 147 -YLGAT---HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKV 189
YL + H Q VF D V +D S V+ A+ ++ V
Sbjct: 214 GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCV 260
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV 138
+++S D +RLWD + + VG +E S F+ D R +LS G + +KLW +
Sbjct: 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQ--SEVYSVAFSPDNRQILSAGAEREIKLWNI 147
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 117 FTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN 176
+++ F +S D T++LW++ +G K+++G H + F+ +LS
Sbjct: 84 LSQENCFAISSSWDKTLRLWDLRTGTTYKRFVG--HQSEVYSVAFSPDNRQILSAG-AER 140
Query: 177 EIVIWDAL 184
EI +W+ L
Sbjct: 141 EIKLWNIL 148
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 23/173 (13%)
Query: 68 INQVRYSSTGGMYVTASKDGAIRLWDGVSAN--CVRSIVGAHGTAEATSANFTKDQRFVL 125
+ +V +S G +AS D +W + CV ++ G E S + +
Sbjct: 64 VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHEN--EVKSVAWAPSGNLLA 121
Query: 126 SCGKDSTVKLWEVSSGRLVKQY-LGATHTQLRFQAVFNDTEEFVLSID---------EPS 175
+C +D +V +WEV + + +HTQ V++ ++E + S E
Sbjct: 122 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE 181
Query: 176 NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL 228
++ V L + WS + P+ +C DR+VR W++ L
Sbjct: 182 DDWVCCATLEGHESTVWS---------LAFDPSGQRLASCSDDRTVRIWRQYL 225
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 68 INQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC 127
I ++++ +G +++S+D +++W + R+++G T T R VLS
Sbjct: 139 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATV--TDIAIIDRGRNVLSA 196
Query: 128 GKDSTVKLWEVSSGRLVKQY 147
D T++LWE +G + +
Sbjct: 197 SLDGTIRLWECGTGTTIHTF 216
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 80 YVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVS 139
++ + +G I++ D + N R I AH +E T F ++S +D +K+W V
Sbjct: 109 FILGTTEGDIKVLDS-NFNLQREIDQAH-VSEITKLKFFPSGEALISSSQDMQLKIWSVK 166
Query: 140 SGRLVKQYLG 149
G + +G
Sbjct: 167 DGSNPRTLIG 176
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 68 INQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC 127
I ++++ +G +++S+D +++W + R+++G T T R VLS
Sbjct: 142 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATV--TDIAIIDRGRNVLSA 199
Query: 128 GKDSTVKLWEVSSGRLVKQY 147
D T++LWE +G + +
Sbjct: 200 SLDGTIRLWECGTGTTIHTF 219
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 80 YVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVS 139
++ + +G I++ D + N R I AH +E T F ++S +D +K+W V
Sbjct: 112 FILGTTEGDIKVLDS-NFNLQREIDQAH-VSEITKLKFFPSGEALISSSQDMQLKIWSVK 169
Query: 140 SGRLVKQYLG 149
G + +G
Sbjct: 170 DGSNPRTLIG 179
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 14/131 (10%)
Query: 22 VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEI-----SVNGAINQVRYSST 76
+RS P G L+ G + ++D L+A P I S A + S
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWD-------LAAPTPRIKAELTSSAPACYALAISPD 152
Query: 77 GGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLW 136
+ + DG I +WD + VR G T A+ + + D + + G D+TV+ W
Sbjct: 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGH--TDGASCIDISNDGTKLWTGGLDNTVRSW 210
Query: 137 EVSSGRLVKQY 147
++ GR ++Q+
Sbjct: 211 DLREGRQLQQH 221
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 68 INQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSA-NFTKDQRFVLS 126
I + G + + + +WD ++A R +A A A + D + S
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWD-LAAPTPRIKAELTSSAPACYALAISPDSKVCFS 158
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGAT 151
C D + +W++ + LV+Q+ G T
Sbjct: 159 CCSDGNIAVWDLHNQTLVRQFQGHT 183
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 86/210 (40%), Gaps = 30/210 (14%)
Query: 34 LLAGTDHPIAHLYDVNT----------FQCYLSANVPEISVNGAINQVRYSSTGGMYVTA 83
L+ G+ L+DV T F +A+V +S+N S M+++
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN--------SLNANMFISG 224
Query: 84 SKDGAIRLWD-GVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR 142
S D +RLWD +++ VR+ G G + S F D + + D T +L+++ +G
Sbjct: 225 SCDTTVRLWDLRITSRAVRTYHGHEG--DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH 282
Query: 143 LVKQY-----LGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKV---AKWSS 194
++ Y + F+ + + + + + +WD L AE V +
Sbjct: 283 QLQVYNREPDRNDNELPIVTSVAFSISGRLLFA-GYSNGDCYVWDTLLAEMVLNLGTLQN 341
Query: 195 NHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
+H G + S +A T D++++ W
Sbjct: 342 SHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 5/129 (3%)
Query: 21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNT-FQCYLSANVPEISVN--GAINQVRYSSTG 77
++ SV F P G G+D L+D+ T Q + P+ + N + V +S +G
Sbjct: 251 DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISG 310
Query: 78 GMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEA--TSANFTKDQRFVLSCGKDSTVKL 135
+ +G +WD + A V ++ + E + + D + + D +K+
Sbjct: 311 RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKI 370
Query: 136 WEVSSGRLV 144
W S R +
Sbjct: 371 WAFSGHRKI 379
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 32/170 (18%), Positives = 66/170 (38%), Gaps = 12/170 (7%)
Query: 65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFV 124
+G + + ++ V+AS+DG + +W+ +++ +I F + + V
Sbjct: 66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI--KLHCPWVMECAFAPNGQSV 123
Query: 125 LSCGKDSTVKLWEVSS-----GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIV 179
G DS ++ +SS G + + H + +E L V
Sbjct: 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCV 183
Query: 180 IWDALTAEKV----AKWSSNHIGAPRWIEHSPAEA-AFITCGTDRSVRFW 224
+WD T +++ +++ S H + + A FI+ D +VR W
Sbjct: 184 LWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW 233
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 4 FSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEIS 63
F + K+ + + + S+++ P G +L +G I +++D+ T + + +
Sbjct: 149 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM- 207
Query: 64 VNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVG 105
I + +S + VTAS DG I+++D AN ++ G
Sbjct: 208 ---PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG 246
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 10/156 (6%)
Query: 71 VRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD 130
V S T + ++S D IRLWD + ++SI G +A + F+ D +++ +
Sbjct: 86 VDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA--GPVDAWTLAFSPDSQYLATGTHV 143
Query: 131 STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS--IDEPSNEIVIWDALTAEK 188
V ++ V SG+ K+Y T + ++ +++ S ID N I+D T K
Sbjct: 144 GKVNIFGVESGK--KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN---IFDIATG-K 197
Query: 189 VAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
+ H R + SP +T D ++ +
Sbjct: 198 LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIY 233
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 4/117 (3%)
Query: 21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80
++ ++ F P+G+ G+D L+D+ Q ++ + I I V +S +G +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--GITSVSFSKSGRLL 285
Query: 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWE 137
+ D +WD + A+ R+ V A + T D V + DS +K+W
Sbjct: 286 LAGYDDFNCNVWDALKAD--RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 4/119 (3%)
Query: 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG 78
T +V S+S P ++G A L+DV C + E IN + + G
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE----SDINAICFFPNGN 239
Query: 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWE 137
+ T S D RL+D + + + + TS +F+K R +L+ D +W+
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/150 (20%), Positives = 62/150 (41%), Gaps = 11/150 (7%)
Query: 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV 138
+ V+AS+DG + +WD + N V +I ++ + + +V G D+ ++ +
Sbjct: 69 LLVSASQDGKLIIWDSYTTNKVHAI--PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126
Query: 139 SSG----RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS 194
+ R+ ++ G HT F D + V S + + +WD + + +
Sbjct: 127 KTREGNVRVSRELAG--HTGYLSCCRFLDDNQIVTSSGDTT--CALWD-IETGQQTTTFT 181
Query: 195 NHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
H G + +P F++ D S + W
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 4/117 (3%)
Query: 21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80
++ ++ F P+G+ G+D L+D+ Q ++ + I I V +S +G +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--GITSVSFSKSGRLL 285
Query: 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWE 137
+ D +WD + A+ R+ V A + T D V + DS +K+W
Sbjct: 286 LAGYDDFNCNVWDALKAD--RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 4/119 (3%)
Query: 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG 78
T +V S+S P ++G A L+DV C + E IN + + G
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE----SDINAICFFPNGN 239
Query: 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWE 137
+ T S D RL+D + + + + TS +F+K R +L+ D +W+
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/150 (20%), Positives = 62/150 (41%), Gaps = 11/150 (7%)
Query: 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV 138
+ V+AS+DG + +WD + N V +I ++ + + +V G D+ ++ +
Sbjct: 69 LLVSASQDGKLIIWDSYTTNKVHAI--PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126
Query: 139 SSG----RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS 194
+ R+ ++ G HT F D + V S + + +WD + + +
Sbjct: 127 KTREGNVRVSRELAG--HTGYLSCCRFLDDNQIVTSSGDTT--CALWD-IETGQQTTTFT 181
Query: 195 NHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
H G + +P F++ D S + W
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 4/117 (3%)
Query: 21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80
++ ++ F P+G+ G+D L+D+ Q ++ + I I V +S +G +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--GITSVSFSKSGRLL 285
Query: 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWE 137
+ D +WD + A+ R+ V A + T D V + DS +K+W
Sbjct: 286 LAGYDDFNCNVWDALKAD--RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 4/119 (3%)
Query: 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG 78
T +V S+S P ++G A L+DV C + E IN + + G
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE----SDINAICFFPNGN 239
Query: 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWE 137
+ T S D RL+D + + + + TS +F+K R +L+ D +W+
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/150 (19%), Positives = 62/150 (41%), Gaps = 11/150 (7%)
Query: 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV 138
+ ++AS+DG + +WD + N V +I ++ + + +V G D+ ++ +
Sbjct: 69 LLLSASQDGKLIIWDSYTTNKVHAI--PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126
Query: 139 SSG----RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS 194
+ R+ ++ G HT F D + V S + + +WD + + +
Sbjct: 127 KTREGNVRVSRELAG--HTGYLSCCRFLDDNQIVTSSGDTT--CALWD-IETGQQTTTFT 181
Query: 195 NHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
H G + +P F++ D S + W
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 4/117 (3%)
Query: 21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80
++ ++ F P+G+ G+D L+D+ Q ++ + I I V +S +G +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--GITSVSFSKSGRLL 285
Query: 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWE 137
+ D +WD + A+ R+ V A + T D V + DS +K+W
Sbjct: 286 LAGYDDFNCNVWDALKAD--RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 4/119 (3%)
Query: 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG 78
T +V S+S P ++G A L+DV C + E IN + + G
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE----SDINAICFFPNGN 239
Query: 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWE 137
+ T S D RL+D + + + + TS +F+K R +L+ D +W+
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/150 (19%), Positives = 62/150 (41%), Gaps = 11/150 (7%)
Query: 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV 138
+ ++AS+DG + +WD + N V +I ++ + + +V G D+ ++ +
Sbjct: 69 LLLSASQDGKLIIWDSYTTNKVHAI--PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126
Query: 139 SSG----RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS 194
+ R+ ++ G HT F D + V S + + +WD + + +
Sbjct: 127 KTREGNVRVSRELAG--HTGYLSCCRFLDDNQIVTSSGDTT--CALWD-IETGQQTTTFT 181
Query: 195 NHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
H G + +P F++ D S + W
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 4/117 (3%)
Query: 21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80
++ ++ F P+G+ G+D L+D+ Q ++ + I I V +S +G +
Sbjct: 239 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--GITSVSFSKSGRLL 296
Query: 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWE 137
+ D +WD + A+ R+ V A + T D V + DS +K+W
Sbjct: 297 LAGYDDFNCNVWDALKAD--RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 4/119 (3%)
Query: 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG 78
T +V S+S P ++G A L+DV C + E IN + + G
Sbjct: 195 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE----SDINAICFFPNGN 250
Query: 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWE 137
+ T S D RL+D + + + + TS +F+K R +L+ D +W+
Sbjct: 251 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 309
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/150 (20%), Positives = 62/150 (41%), Gaps = 11/150 (7%)
Query: 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV 138
+ V+AS+DG + +WD + N V +I ++ + + +V G D+ ++ +
Sbjct: 80 LLVSASQDGKLIIWDSYTTNKVHAI--PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 137
Query: 139 SSG----RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS 194
+ R+ ++ G HT F D + V S + + +WD + + +
Sbjct: 138 KTREGNVRVSRELAG--HTGYLSCCRFLDDNQIVTSSGDTT--CALWD-IETGQQTTTFT 192
Query: 195 NHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
H G + +P F++ D S + W
Sbjct: 193 GHTGDVMSLSLAPDTRLFVSGACDASAKLW 222
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 11 RAFRVIQ--DTH--NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
R+ + +Q +TH +V SV ++PSGD +G+D LYD+ + ++ E + G
Sbjct: 228 RSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR-EVAIYSKESIIFG 286
Query: 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
A + V +S +G + D I +WD + + V + G ++ + D S
Sbjct: 287 A-SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN--RVSTLRVSPDGTAFCS 343
Query: 127 CGKDSTVKLW 136
D T+++W
Sbjct: 344 GSWDHTLRVW 353
Score = 33.9 bits (76), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
Query: 113 TSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID 172
++ +FT +L+ D T LW+V SG+L++ + G L ++T +S
Sbjct: 158 SACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS-G 216
Query: 173 EPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
+ ++WD + + V + + H + + P+ AF + D + R +
Sbjct: 217 GCDKKAMVWDMRSGQCVQAFET-HESDVNSVRYYPSGDAFASGSDDATCRLY 267
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 36/80 (45%)
Query: 68 INQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC 127
++ ++++ +TAS DG LWD S ++S G ++ +S
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSG 216
Query: 128 GKDSTVKLWEVSSGRLVKQY 147
G D +W++ SG+ V+ +
Sbjct: 217 GCDKKAMVWDMRSGQCVQAF 236
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 45/167 (26%)
Query: 22 VRSVSFHPSGDFLLAGTDHPIAHLY---------------------------DVNTFQ-- 52
+RS++ HP+ ++L+G+D L+ D +TF
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 53 CY--------LSANVPEISVNGA----INQVRYSSTGG--MYVTASKDGAIRLWDGVSAN 98
C L + P ++ +N V Y +TAS D I++WD + +
Sbjct: 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219
Query: 99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVK 145
CV ++ G + + A F ++S +D T+K+W S+ ++ K
Sbjct: 220 CVATLEGH--MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 45/167 (26%)
Query: 22 VRSVSFHPSGDFLLAGTDHPIAHLY---------------------------DVNTFQ-- 52
+RS++ HP+ ++L+G+D L+ D +TF
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 53 CY--------LSANVPEISVNGA----INQVRYSSTGG--MYVTASKDGAIRLWDGVSAN 98
C L + P ++ +N V Y +TAS D I++WD + +
Sbjct: 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219
Query: 99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVK 145
CV ++ G + + A F ++S +D T+K+W S+ ++ K
Sbjct: 220 CVATLEGH--MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS 140
+TAS D I++WD + +CV ++ G + + A F ++S +D T+K+W S+
Sbjct: 202 ITASDDLTIKIWDYQTKSCVATLEGH--MSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Query: 141 GRLVK 145
++ K
Sbjct: 260 YKVEK 264
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 28/99 (28%)
Query: 15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYL-----------SANVPEIS 63
+I +++++RSV F P G L IAH D N+F C S +VP S
Sbjct: 229 MINNSNSIRSVKFSPQGSLL------AIAH--DSNSFGCITLYETEFGERIGSLSVPTHS 280
Query: 64 VNGAINQVRYSS---------TGGMYVTASKDGAIRLWD 93
++ + +SS +G +A DG +R WD
Sbjct: 281 SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 28/99 (28%)
Query: 15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYL-----------SANVPEIS 63
+I +++++RSV F P G L IAH D N+F C S +VP S
Sbjct: 239 MINNSNSIRSVKFSPQGSLL------AIAH--DSNSFGCITLYETEFGERIGSLSVPTHS 290
Query: 64 VNGAINQVRYSS---------TGGMYVTASKDGAIRLWD 93
++ + +SS +G +A DG +R WD
Sbjct: 291 SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 329
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS 140
+TAS D I++WD + +CV ++ G + + A F ++S +D T+K+W S+
Sbjct: 202 ITASDDLTIKIWDYQTKSCVATLEGH--MSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Query: 141 GRLVK 145
++ K
Sbjct: 260 YKVEK 264
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 10/130 (7%)
Query: 22 VRSVSFHPSGDF-LLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80
+ SV F PS F +++G+D +++ F+ + E + ++ VRY+ G ++
Sbjct: 150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK--FKSTFGEHT--KFVHSVRYNPDGSLF 205
Query: 81 VTASKDGAIRLWDGVSANCV-----RSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKL 135
+ DG I L++GV S+ + ++ D + S D T+K+
Sbjct: 206 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI 265
Query: 136 WEVSSGRLVK 145
W V++ ++ K
Sbjct: 266 WNVATLKVEK 275
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 61/161 (37%), Gaps = 12/161 (7%)
Query: 74 SSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVL------SC 127
S+ G ++AS D + LWD + IV A SA +L S
Sbjct: 189 SNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSV 248
Query: 128 GKDSTVKLWEVSSGRLVK-QYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA 186
D + +W+ S K +L HT FN EF+L+ + +WD
Sbjct: 249 ADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 187 E-KVAKWSS--NHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
+ K+ + S + I W H+ E + GTDR + W
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHN--ETILASSGTDRRLNVW 347
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Query: 34 LLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD 93
+L +D L+++ + L + + + + S G V+ KD ++++WD
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD 167
Query: 94 GVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWE 137
+S V AH + A LSCG+D + LW+
Sbjct: 168 -LSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 62 ISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCV---RSIVGAHGTAEATSANFT 118
+ + V + S G+ V AS GA+ LW+ + + + H T + F+
Sbjct: 91 VQTEAGVTDVAWVSEKGILV-ASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS 149
Query: 119 KDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEI 178
D +S GKD +VK+W++S ++K Y A +++ A + LS E I
Sbjct: 150 -DGTQAVSGGKDFSVKVWDLSQKAVLKSY-NAHSSEVNCVAACPGKDTIFLSCGE-DGRI 206
Query: 179 VIWD 182
++WD
Sbjct: 207 LLWD 210
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 78 GMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWE 137
G +++ S DG I+L D + + +R+ G D ++SCG+D TV++W
Sbjct: 196 GHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGD---IVSCGEDRTVRIWS 252
Query: 138 VSSGRL 143
+G L
Sbjct: 253 KENGSL 258
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 70/150 (46%), Gaps = 12/150 (8%)
Query: 78 GMYVTASKDGAIRLWDGVSANCVRSIVGAHGTA-EATSANFTKDQRFVLSCGKDSTVKLW 136
G+ ++ S D ++W + V ++ + + +A +F++++ L+ D T+KLW
Sbjct: 115 GVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENK--FLTASADKTIKLW 170
Query: 137 EVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNH 196
+ + +++K + G + +R AV +D S D I + D T + V + H
Sbjct: 171 Q--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSND---GLIKLVDXHTGD-VLRTYEGH 224
Query: 197 IGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226
I+ P ++CG DR+VR W +
Sbjct: 225 ESFVYCIKLLP-NGDIVSCGEDRTVRIWSK 253
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 61/161 (37%), Gaps = 12/161 (7%)
Query: 74 SSTGGMYVTASKDGAIRLWD---GVSANCV---RSIVGAHGTAEATSANFTKDQRFVLSC 127
S+ G ++AS D + LWD G + ++I H A + S
Sbjct: 189 SNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSV 248
Query: 128 GKDSTVKLWEVSSGRLVK-QYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA 186
D + +W+ S K +L HT FN EF+L+ + +WD
Sbjct: 249 ADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 187 E-KVAKWSS--NHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
+ K+ + S + I W H+ E + GTDR + W
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHN--ETILASSGTDRRLNVW 347
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 20/151 (13%)
Query: 5 SKATAKRAFRVIQDTHNVRSVSFHPSGDFLLA-GTDHPIAHLYDVNTFQCYLSANVPEIS 63
S T+K + V T V +SF+P +F+LA G+ L+D+ + L S
Sbjct: 261 SNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFE---S 317
Query: 64 VNGAINQVRYSSTGGMYVTAS-KDGAIRLWDGVSANCVRS-------------IVGAHGT 109
I QV +S + +S D + +WD +S I G H T
Sbjct: 318 HKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGH-T 376
Query: 110 AEATSANFTKDQRFVL-SCGKDSTVKLWEVS 139
A+ + ++ ++ +V+ S +D+ +++W+++
Sbjct: 377 AKISDFSWNPNEPWVICSVSEDNIMQIWQMA 407
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 33.9 bits (76), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/135 (18%), Positives = 55/135 (40%), Gaps = 9/135 (6%)
Query: 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG 78
+H V+ + G + L+ + L+DV T + Y + + V
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF----VGHKSDVMSVDIDKKAS 120
Query: 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEAT----SANFTKDQRFVLSCGKDSTVK 134
M ++ S+D I++W + C+ +++G + + D ++S G D VK
Sbjct: 121 MIISGSRDKTIKVWT-IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 135 LWEVSSGRLVKQYLG 149
W ++ ++ ++G
Sbjct: 180 AWNLNQFQIEADFIG 194
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 79 MYVTASKDGAIRLW-----DGVSANCVRSIVG-AHGTAEATSANFTKDQRFVLSCGKDST 132
+ ++AS+D + W D VRS G +H + T T D + LS D T
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT---LTADGAYALSASWDKT 88
Query: 133 VKLWEVSSGRLVKQYLG 149
++LW+V++G ++++G
Sbjct: 89 LRLWDVATGETYQRFVG 105
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 36 AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV 95
AG D + +++N FQ I N IN + S G + +A KDG I LW+
Sbjct: 172 AGNDK-MVKAWNLNQFQI----EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 96 SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLV 144
+ + ++ E S F+ + R+ L+ + +K++ + LV
Sbjct: 227 AKKAMYTL---SAQDEVFSLAFSPN-RYWLAAATATGIKVFSLDPQYLV 271
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 33.9 bits (76), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/135 (18%), Positives = 55/135 (40%), Gaps = 9/135 (6%)
Query: 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG 78
+H V+ + G + L+ + L+DV T + Y + + V
Sbjct: 59 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF----VGHKSDVMSVDIDKKAS 114
Query: 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEAT----SANFTKDQRFVLSCGKDSTVK 134
M ++ S+D I++W + C+ +++G + + D ++S G D VK
Sbjct: 115 MIISGSRDKTIKVWT-IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 173
Query: 135 LWEVSSGRLVKQYLG 149
W ++ ++ ++G
Sbjct: 174 AWNLNQFQIEADFIG 188
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 79 MYVTASKDGAIRLW-----DGVSANCVRSIVG-AHGTAEATSANFTKDQRFVLSCGKDST 132
+ ++AS+D + W D VRS G +H + T T D + LS D T
Sbjct: 26 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT---LTADGAYALSASWDKT 82
Query: 133 VKLWEVSSGRLVKQYLG 149
++LW+V++G ++++G
Sbjct: 83 LRLWDVATGETYQRFVG 99
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 36 AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV 95
AG D + +++N FQ I N IN + S G + +A KDG I LW+
Sbjct: 166 AGNDK-MVKAWNLNQFQI----EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 220
Query: 96 SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLV 144
+ + ++ E S F+ + R+ L+ + +K++ + LV
Sbjct: 221 AKKAMYTLSAQD---EVFSLAFSPN-RYWLAAATATGIKVFSLDPQYLV 265
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/135 (18%), Positives = 55/135 (40%), Gaps = 9/135 (6%)
Query: 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG 78
+H V+ + G + L+ + L+DV T + Y + + V
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF----VGHKSDVMSVDIDKKAS 120
Query: 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEAT----SANFTKDQRFVLSCGKDSTVK 134
M ++ S+D I++W + C+ +++G + + D ++S G D VK
Sbjct: 121 MIISGSRDKTIKVWT-IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 135 LWEVSSGRLVKQYLG 149
W ++ ++ ++G
Sbjct: 180 AWNLNQFQIEADFIG 194
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 79 MYVTASKDGAIRLW-----DGVSANCVRSIVG-AHGTAEATSANFTKDQRFVLSCGKDST 132
+ ++AS+D + W D VRS G +H + T T D + LS D T
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT---LTADGAYALSASWDKT 88
Query: 133 VKLWEVSSGRLVKQYLG 149
++LW+V++G ++++G
Sbjct: 89 LRLWDVATGETYQRFVG 105
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 36 AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV 95
AG D + +++N FQ I N IN + S G + +A KDG I LW+
Sbjct: 172 AGNDK-MVKAWNLNQFQI----EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 96 SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLV 144
+ + ++ E S F+ + R+ L+ + +K++ + LV
Sbjct: 227 AKKAMYTLSAQD---EVFSLAFSPN-RYWLAAATATGIKVFSLDPQYLV 271
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 33.9 bits (76), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/135 (18%), Positives = 55/135 (40%), Gaps = 9/135 (6%)
Query: 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG 78
+H V+ + G + L+ + L+DV T + Y + + V
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF----VGHKSDVMSVDIDKKAS 120
Query: 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEAT----SANFTKDQRFVLSCGKDSTVK 134
M ++ S+D I++W + C+ +++G + + D ++S G D VK
Sbjct: 121 MIISGSRDKTIKVWT-IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 135 LWEVSSGRLVKQYLG 149
W ++ ++ ++G
Sbjct: 180 AWNLNQFQIEADFIG 194
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 79 MYVTASKDGAIRLW-----DGVSANCVRSIVG-AHGTAEATSANFTKDQRFVLSCGKDST 132
+ ++AS+D + W D VRS G +H + T T D + LS D T
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT---LTADGAYALSASWDKT 88
Query: 133 VKLWEVSSGRLVKQYLG 149
++LW+V++G ++++G
Sbjct: 89 LRLWDVATGETYQRFVG 105
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 36 AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD 93
AG D + +++N FQ I N IN + S G + +A KDG I LW+
Sbjct: 172 AGNDK-MVKAWNLNQFQI----EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/135 (18%), Positives = 55/135 (40%), Gaps = 9/135 (6%)
Query: 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG 78
+H V+ + G + L+ + L+DV T + Y + + V
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF----VGHKSDVMSVDIDKKAS 120
Query: 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEAT----SANFTKDQRFVLSCGKDSTVK 134
M ++ S+D I++W + C+ +++G + + D ++S G D VK
Sbjct: 121 MIISGSRDKTIKVWT-IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 135 LWEVSSGRLVKQYLG 149
W ++ ++ ++G
Sbjct: 180 AWNLNQFQIEADFIG 194
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 79 MYVTASKDGAIRLW-----DGVSANCVRSIVG-AHGTAEATSANFTKDQRFVLSCGKDST 132
+ ++AS+D + W D VRS G +H + T T D + LS D T
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT---LTADGAYALSASWDKT 88
Query: 133 VKLWEVSSGRLVKQYLG 149
++LW+V++G ++++G
Sbjct: 89 LRLWDVATGETYQRFVG 105
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 36 AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD 93
AG D + +++N FQ I N IN + S G + +A KDG I LW+
Sbjct: 172 AGNDK-MVKAWNLNQFQI----EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 26/130 (20%)
Query: 65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFV 124
NG +N + ++S G +T D +RLW+ S+N ++V N K +F
Sbjct: 245 NGKVNGLCFTSDGLHLLTVGTDNRMRLWN--SSNGENTLVNYGKVCN----NSKKGLKFT 298
Query: 125 LSCG---------KDSTVKLWEVSSGRLVKQYLGATHT------QLRFQAVFNDTEE--- 166
+SCG ST+ ++ V SG + G T Q FQ +++ + +
Sbjct: 299 VSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNI 358
Query: 167 --FVLSIDEP 174
+V S+ EP
Sbjct: 359 LAWVPSLYEP 368
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/228 (19%), Positives = 84/228 (36%), Gaps = 42/228 (18%)
Query: 15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYS 74
V+ D N S++ G DHP H Y V T Q Y P +
Sbjct: 69 VLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWY-----PHDT----------- 112
Query: 75 STGGMYVTASKDGAIRLWDGVSANCVRS--IVGAHGTAEATSANFTKDQRFVLSCG-KDS 131
GM+ ++S D +++WD N +++ + T + + + +++ G +
Sbjct: 113 ---GMFTSSSFDKTLKVWD---TNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGP 166
Query: 132 TVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA----- 186
V+L ++ SG G H Q ++ +++L+ + + +WD A
Sbjct: 167 KVQLCDLKSGSCSHILQG--HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLI 224
Query: 187 ----------EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
+ V ++ H G + + +T GTD +R W
Sbjct: 225 TLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 23/126 (18%)
Query: 33 FLLAGTDHPIAHLYDVNTFQC--YLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIR 90
+ GT P L D+ + C L + EI + Y + TAS D ++
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDY-----ILATASADSRVK 212
Query: 91 LWD---------------GVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKL 135
LWD G + V S AH + FT D +L+ G D+ ++L
Sbjct: 213 LWDVRRASGCLITLDQHNGKKSQAVESANTAH-NGKVNGLCFTSDGLHLLTVGTDNRMRL 271
Query: 136 WEVSSG 141
W S+G
Sbjct: 272 WNSSNG 277
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 58/158 (36%), Gaps = 14/158 (8%)
Query: 78 GMYVTASKDGAIRLWD-------GVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD 130
G ++AS D I LWD G + G E S + + F S D
Sbjct: 191 GHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFG-SVADD 249
Query: 131 STVKLWEVSSGRLVKQYLGA-THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE-K 188
+ +W+ S K HT FN EF+L+ + +WD + K
Sbjct: 250 QKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 309
Query: 189 VAKWSS--NHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
+ + S + I +W H+ E + GTDR + W
Sbjct: 310 LHSFESHKDEIFQVQWSPHN--ETILASSGTDRRLNVW 345
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 20/151 (13%)
Query: 5 SKATAKRAFRVIQDTHNVRSVSFHPSGDFLLA-GTDHPIAHLYDVNTFQCYLSANVPEIS 63
S T+K + V T V +SF+P +F+LA G+ L+D+ + L + S
Sbjct: 259 SNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE---S 315
Query: 64 VNGAINQVRYSSTGGMYVTAS-KDGAIRLWDGVSANCVRS-------------IVGAHGT 109
I QV++S + +S D + +WD +S I G H T
Sbjct: 316 HKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGH-T 374
Query: 110 AEATSANFTKDQRFVL-SCGKDSTVKLWEVS 139
A+ + ++ ++ +V+ S +D+ +++W+++
Sbjct: 375 AKISDFSWNPNEPWVICSVSEDNIMQVWQMA 405
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 69 NQVRYSSTGGMYVTASKDGAIRLWDGVSANC-VRSIVGAHGTAEATSANFTKDQRFVLSC 127
N R ++ G + D +I +WD +AN ++++ H + +D+ +LS
Sbjct: 226 NSTRVATATG----SDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSS 281
Query: 128 GKDSTVKLWEVSSGRLVKQY 147
G+D+TV LW S + Q+
Sbjct: 282 GRDNTVLLWNPESAEQLSQF 301
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/135 (17%), Positives = 54/135 (40%), Gaps = 9/135 (6%)
Query: 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG 78
+H V+ + G + L+ + L+DV T + Y + + V
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF----VGHKSDVXSVDIDKKAS 120
Query: 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEAT----SANFTKDQRFVLSCGKDSTVK 134
++ S+D I++W + C+ +++G + + D ++S G D VK
Sbjct: 121 XIISGSRDKTIKVWT-IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVK 179
Query: 135 LWEVSSGRLVKQYLG 149
W ++ ++ ++G
Sbjct: 180 AWNLNQFQIEADFIG 194
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 79 MYVTASKDGAIRLW-----DGVSANCVRSIVG-AHGTAEATSANFTKDQRFVLSCGKDST 132
+ ++AS+D + W D VRS G +H + T T D + LS D T
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT---LTADGAYALSASWDKT 88
Query: 133 VKLWEVSSGRLVKQYLG 149
++LW+V++G ++++G
Sbjct: 89 LRLWDVATGETYQRFVG 105
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 36 AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD 93
AG D + +++N FQ I N IN + S G + +A KDG I LW+
Sbjct: 172 AGNDKXV-KAWNLNQFQI----EADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 14/159 (8%)
Query: 77 GGMYVTASKDGAIRLWDGVSANC-------VRSIVGAHGTAEATSANFTKDQRFVLSCGK 129
G ++AS D I LWD ++A ++I H A + S
Sbjct: 194 NGYLLSASDDHTICLWD-INATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD 252
Query: 130 DSTVKLWEVSSGRLVK-QYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE- 187
D + +W+ + K + HT FN EF+L+ + +WD +
Sbjct: 253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 312
Query: 188 KVAKWSS--NHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
K+ + S + I +W H+ E + GTDR + W
Sbjct: 313 KLHSFESHKDEIFQVQWSPHN--ETILASSGTDRRLHVW 349
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 18/147 (12%)
Query: 8 TAKRAFRVIQDTHNVRSVSFHPSGDFLLA-GTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
T+K + V T V +SF+P +F+LA G+ L+D+ + L + S
Sbjct: 266 TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE---SHKD 322
Query: 67 AINQVRYSSTGGMYVTAS-KDGAIRLWDGVSANCVRSIVGA----------HGTAEATSA 115
I QV++S + +S D + +WD +S A HG A +
Sbjct: 323 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS 382
Query: 116 NFT---KDQRFVLSCGKDSTVKLWEVS 139
+F+ + + S +D+ +++W+++
Sbjct: 383 DFSWNPNEPWIICSVSEDNIMQVWQMA 409
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 14/158 (8%)
Query: 78 GMYVTASKDGAIRLWDGVSANC-------VRSIVGAHGTAEATSANFTKDQRFVLSCGKD 130
G ++AS D I LWD ++A ++I H A + S D
Sbjct: 199 GYLLSASDDHTICLWD-INATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 257
Query: 131 STVKLWEVSSGRLVK-QYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE-K 188
+ +W+ + K + HT FN EF+L+ + +WD + K
Sbjct: 258 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 317
Query: 189 VAKWSS--NHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
+ + S + I +W H+ E + GTDR + W
Sbjct: 318 LHSFESHKDEIFQVQWSPHN--ETILASSGTDRRLHVW 353
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 18/147 (12%)
Query: 8 TAKRAFRVIQDTHNVRSVSFHPSGDFLLA-GTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
T+K + V T V +SF+P +F+LA G+ L+D+ + L + S
Sbjct: 270 TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE---SHKD 326
Query: 67 AINQVRYSSTGGMYVTAS-KDGAIRLWDGVSANCVRSIVGA----------HGTAEATSA 115
I QV++S + +S D + +WD +S A HG A +
Sbjct: 327 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS 386
Query: 116 NFT---KDQRFVLSCGKDSTVKLWEVS 139
+F+ + + S +D+ +++W+++
Sbjct: 387 DFSWNPNEPWIICSVSEDNIMQVWQMA 413
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 14/159 (8%)
Query: 77 GGMYVTASKDGAIRLWDGVSANC-------VRSIVGAHGTAEATSANFTKDQRFVLSCGK 129
G ++AS D I LWD ++A ++I H A + S
Sbjct: 196 NGYLLSASDDHTICLWD-INATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD 254
Query: 130 DSTVKLWEVSSGRLVK-QYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE- 187
D + +W+ + K + HT FN EF+L+ + +WD +
Sbjct: 255 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 314
Query: 188 KVAKWSS--NHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
K+ + S + I +W H+ E + GTDR + W
Sbjct: 315 KLHSFESHKDEIFQVQWSPHN--ETILASSGTDRRLHVW 351
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 18/147 (12%)
Query: 8 TAKRAFRVIQDTHNVRSVSFHPSGDFLLA-GTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
T+K + V T V +SF+P +F+LA G+ L+D+ + L + S
Sbjct: 268 TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE---SHKD 324
Query: 67 AINQVRYSSTGGMYVTAS-KDGAIRLWDGVSANCVRSIVGA----------HGTAEATSA 115
I QV++S + +S D + +WD +S A HG A +
Sbjct: 325 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS 384
Query: 116 NFT---KDQRFVLSCGKDSTVKLWEVS 139
+F+ + + S +D+ +++W+++
Sbjct: 385 DFSWNPNEPWIICSVSEDNIMQVWQMA 411
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 68 INQVRYSSTGGMYV-TASKDGAIRLWDGVSANCVRSIVGAHGTAEAT--SANFTKDQRFV 124
+ V +S G +V T D I +DG S ++ I + + ++ Q+F
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA 268
Query: 125 LSCGKDSTVKLWEVSSGRLVKQY 147
+ G D+T+++W+V++ + V+++
Sbjct: 269 -TVGADATIRVWDVTTSKCVQKW 290
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 16/127 (12%)
Query: 22 VRSVSFHPS---GDFLLAGTDHPIAHLYDVNTFQCYLSAN-VPEISV--NGAINQVRYSS 75
+ +SF P G+FL+AG+ DV ++ S +P+ G + V +S
Sbjct: 42 IGCLSFSPPTLPGNFLIAGS-----WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD 96
Query: 76 TGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRF--VLSCGKDSTV 133
G TAS D ++WD +S+N ++I A A + ++ K + V++ D T+
Sbjct: 97 DGSKVFTASCDKTAKMWD-LSSN--QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTL 153
Query: 134 KLWEVSS 140
K W+ S
Sbjct: 154 KFWDTRS 160
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 68 INQVRYSSTGGMYV-TASKDGAIRLWDGVSANCVRSIVGAHGTAEAT--SANFTKDQRFV 124
+ V +S G +V T D I +DG S ++ I + + ++ Q+F
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA 268
Query: 125 LSCGKDSTVKLWEVSSGRLVKQY 147
+ G D+T+++W+V++ + V+++
Sbjct: 269 -TVGADATIRVWDVTTSKCVQKW 290
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 59 VPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANF- 117
VP V+ NQ +TGG +DG + +WD S++ AH AE +F
Sbjct: 237 VPLHCVDRHPNQQHVVATGG------QDGMLSIWDVRQGTMPVSLLKAH-EAEMWEVHFH 289
Query: 118 TKDQRFVLSCGKDSTVKLWEVSS 140
+ + +C +D ++ W+ S+
Sbjct: 290 PSNPEHLFTCSEDGSLWHWDAST 312
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN 98
NG + V ++ TG + +A DG +RLW +N
Sbjct: 306 NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN 98
NG + V ++ TG + +A DG +RLW +N
Sbjct: 306 NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN 98
NG + V ++ TG + +A DG +RLW +N
Sbjct: 304 NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 337
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 68 INQVRYSSTGGMYVTASKDGAIRLWDGVSAN--CVRSIVGAHGTAEATSANFTKDQRFVL 125
+ V + + + ++S D +R+W + CV + G GT ++ + T+ +
Sbjct: 156 VKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC 215
Query: 126 SCGKDSTVKLWE 137
S DSTV++W+
Sbjct: 216 SGSDDSTVRVWK 227
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Query: 22 VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV 81
V SV + G FL G + + +YDV + Q L + G ++ R+ + G
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVES-QTKLRTMAGHQARVGCLSWNRHVLSSG--- 192
Query: 82 TASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS 140
S+ GAI D AN + H ++E + D + S G D+ V++W+ S
Sbjct: 193 --SRSGAIHHHDVRIANHQIGTLQGH-SSEVCGLAWRSDGLQLASGGNDNVVQIWDARS 248
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 51/269 (18%), Positives = 93/269 (34%), Gaps = 49/269 (18%)
Query: 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ-----CYL 55
+ S + ++ Q + SV++ G++L GT L+DV +
Sbjct: 49 LWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH 108
Query: 56 SANVPEISVN----------GAINQ----------------------VRYSSTGGMYVTA 83
SA V +S N G I+ +R++ G +
Sbjct: 109 SARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 168
Query: 84 SKDGAIRLWDGVSANC----VRSIVGAHGTAEATSANFTKDQRFVLSCG---KDSTVKLW 136
D + +W +++ G +A + + Q VL+ G D +++W
Sbjct: 169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA--WCPWQSNVLATGGGTSDRHIRIW 226
Query: 137 EVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNH 196
V SG + H+Q+ +E + N++VIW T KVA+ H
Sbjct: 227 NVCSGACLSAV--DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE-LKGH 283
Query: 197 IGAPRWIEHSPAEAAFITCGTDRSVRFWK 225
+ SP A + D ++R W+
Sbjct: 284 TSRVLSLTMSPDGATVASAAADETLRLWR 312
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 124 VLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDA 183
VL+ D++V LW SSG ++ Q L +V E L++ S E+ +WD
Sbjct: 38 VLAVALDNSVYLWSASSGDIL-QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 96
Query: 184 LTAEKVAKWSSN--HIGAPRW 202
+++ +S+ +G+ W
Sbjct: 97 QQQKRLRNMTSHSARVGSLSW 117
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 124 VLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDA 183
VL+ D++V LW SSG ++ Q L +V E L++ S E+ +WD
Sbjct: 129 VLAVALDNSVYLWSASSGDIL-QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 187
Query: 184 LTAEKVAKWSSN--HIGAPRW 202
+++ +S+ +G+ W
Sbjct: 188 QQQKRLRNMTSHSARVGSLSW 208
>pdb|2ZF5|O Chain O, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
pdb|2ZF5|Y Chain Y, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
Length = 497
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 165 EEFVLSIDE--PSNEIVIWDALT-AEKVAKWS-SNHIGAPRWIEHSPAE 209
E+FVLS+DE S +I+D + + ++ H P W+EH+P E
Sbjct: 2 EKFVLSLDEGTTSARAIIFDRESNIHGIGQYEFPQHYPRPGWVEHNPEE 50
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 124 VLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDA 183
VL+ D++V LW SSG ++ Q L +V E L++ S E+ +WD
Sbjct: 118 VLAVALDNSVYLWSASSGDIL-QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 176
Query: 184 LTAEKVAKWSSN--HIGAPRW 202
+++ +S+ +G+ W
Sbjct: 177 QQQKRLRNMTSHSARVGSLSW 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,775,957
Number of Sequences: 62578
Number of extensions: 261268
Number of successful extensions: 1209
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 673
Number of HSP's gapped (non-prelim): 292
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)