Query 040370
Match_columns 228
No_of_seqs 665 out of 1068
Neff 12.0
Searched_HMMs 46136
Date Fri Mar 29 07:47:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0263 Transcription initiati 100.0 7.6E-43 1.6E-47 262.5 20.7 208 10-227 442-649 (707)
2 KOG0272 U4/U6 small nuclear ri 100.0 1E-43 2.2E-48 250.4 14.7 214 1-225 245-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 2.9E-42 6.3E-47 240.8 19.1 216 1-225 141-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 6.3E-43 1.4E-47 246.4 15.9 209 8-226 206-417 (459)
5 KOG0271 Notchless-like WD40 re 100.0 4.5E-41 9.7E-46 234.9 20.6 206 14-227 110-439 (480)
6 KOG0279 G protein beta subunit 100.0 5.5E-40 1.2E-44 220.6 23.0 215 2-227 43-262 (315)
7 KOG0315 G-protein beta subunit 100.0 4.7E-39 1E-43 213.2 23.6 218 1-227 65-288 (311)
8 KOG0279 G protein beta subunit 100.0 1.3E-38 2.7E-43 214.1 23.6 215 1-227 89-313 (315)
9 KOG0286 G-protein beta subunit 100.0 8.7E-39 1.9E-43 216.2 22.8 207 10-225 136-343 (343)
10 KOG0286 G-protein beta subunit 100.0 1.4E-37 3E-42 210.4 24.8 208 10-227 46-259 (343)
11 KOG0263 Transcription initiati 100.0 2.5E-37 5.4E-42 232.9 20.1 210 11-227 370-607 (707)
12 KOG0284 Polyadenylation factor 100.0 1.4E-38 3E-43 223.9 11.8 201 18-226 179-379 (464)
13 KOG0284 Polyadenylation factor 100.0 1.6E-38 3.4E-43 223.6 11.4 201 17-227 136-337 (464)
14 KOG0645 WD40 repeat protein [G 100.0 3.9E-35 8.4E-40 196.6 26.3 210 11-226 6-224 (312)
15 KOG0266 WD40 repeat-containing 100.0 8.5E-36 1.8E-40 226.9 24.8 208 12-227 196-409 (456)
16 PTZ00421 coronin; Provisional 100.0 6.9E-35 1.5E-39 221.6 28.6 210 14-227 70-290 (493)
17 KOG0266 WD40 repeat-containing 100.0 3E-35 6.5E-40 223.9 25.4 202 18-227 158-364 (456)
18 KOG0640 mRNA cleavage stimulat 100.0 8.9E-37 1.9E-41 208.6 14.8 226 1-227 198-426 (430)
19 KOG0295 WD40 repeat-containing 100.0 8.8E-36 1.9E-40 207.0 19.6 215 1-226 176-405 (406)
20 KOG0265 U5 snRNP-specific prot 100.0 7.7E-36 1.7E-40 202.6 18.8 207 11-227 39-246 (338)
21 KOG0285 Pleiotropic regulator 100.0 8.2E-36 1.8E-40 207.2 18.3 202 14-226 146-347 (460)
22 KOG0291 WD40-repeat-containing 100.0 6.2E-35 1.4E-39 219.6 24.3 202 18-227 306-508 (893)
23 KOG0291 WD40-repeat-containing 100.0 3.9E-35 8.3E-40 220.7 23.1 216 1-227 334-550 (893)
24 KOG0282 mRNA splicing factor [ 100.0 9.1E-37 2E-41 218.7 13.3 215 1-225 241-503 (503)
25 KOG0315 G-protein beta subunit 100.0 5.2E-35 1.1E-39 194.1 20.1 207 11-226 31-244 (311)
26 KOG0295 WD40 repeat-containing 100.0 7.3E-36 1.6E-40 207.4 16.1 217 1-227 134-364 (406)
27 KOG0273 Beta-transducin family 100.0 6E-35 1.3E-39 209.0 21.1 207 11-227 268-482 (524)
28 KOG0293 WD40 repeat-containing 100.0 1.1E-35 2.4E-40 209.9 15.4 210 14-226 219-512 (519)
29 KOG0277 Peroxisomal targeting 100.0 9.2E-35 2E-39 193.4 18.2 214 7-227 48-265 (311)
30 KOG0296 Angio-associated migra 100.0 1.4E-33 2.9E-38 196.2 24.1 216 1-227 90-398 (399)
31 KOG0276 Vesicle coat complex C 100.0 1.4E-34 2.9E-39 213.9 20.1 214 1-226 39-256 (794)
32 PTZ00420 coronin; Provisional 100.0 7.5E-33 1.6E-37 211.8 29.8 213 11-227 66-293 (568)
33 KOG0319 WD40-repeat-containing 100.0 1.3E-34 2.8E-39 217.2 18.0 208 12-225 404-617 (775)
34 KOG0278 Serine/threonine kinas 100.0 7.7E-35 1.7E-39 193.6 14.3 204 13-227 94-297 (334)
35 KOG0277 Peroxisomal targeting 100.0 2.1E-34 4.6E-39 191.6 14.5 217 1-226 87-308 (311)
36 KOG0318 WD40 repeat stress pro 100.0 1.6E-32 3.4E-37 199.1 24.3 217 9-227 180-560 (603)
37 KOG0282 mRNA splicing factor [ 100.0 3.1E-34 6.8E-39 205.8 14.1 206 11-226 206-461 (503)
38 KOG0281 Beta-TrCP (transducin 100.0 7.1E-35 1.5E-39 202.2 10.3 205 1-227 221-428 (499)
39 PLN00181 protein SPA1-RELATED; 100.0 3.3E-32 7.1E-37 220.8 27.0 205 15-227 479-690 (793)
40 cd00200 WD40 WD40 domain, foun 100.0 8.4E-32 1.8E-36 194.4 26.4 213 1-225 77-289 (289)
41 cd00200 WD40 WD40 domain, foun 100.0 1.1E-31 2.5E-36 193.7 26.7 203 15-227 5-207 (289)
42 KOG0645 WD40 repeat protein [G 100.0 3.1E-32 6.8E-37 182.7 21.5 211 5-227 91-311 (312)
43 KOG0285 Pleiotropic regulator 100.0 4.1E-33 9E-38 193.8 17.7 212 1-226 177-388 (460)
44 KOG0305 Anaphase promoting com 100.0 3.1E-32 6.8E-37 201.5 22.5 219 1-227 201-461 (484)
45 KOG0319 WD40-repeat-containing 100.0 9.2E-33 2E-37 207.3 19.3 211 12-227 358-577 (775)
46 PLN00181 protein SPA1-RELATED; 100.0 2.3E-31 5E-36 215.9 28.7 214 1-227 559-793 (793)
47 KOG0316 Conserved WD40 repeat- 100.0 4.6E-32 9.9E-37 178.9 19.8 203 10-226 8-212 (307)
48 KOG0292 Vesicle coat complex C 100.0 1.5E-32 3.3E-37 210.2 19.7 217 1-227 35-280 (1202)
49 KOG0640 mRNA cleavage stimulat 100.0 7.4E-33 1.6E-37 189.5 16.0 215 11-227 104-335 (430)
50 KOG0264 Nucleosome remodeling 100.0 1.6E-32 3.6E-37 195.5 17.7 213 10-227 168-404 (422)
51 KOG0313 Microtubule binding pr 100.0 7E-32 1.5E-36 188.7 20.2 217 1-227 129-376 (423)
52 KOG0313 Microtubule binding pr 100.0 2.3E-32 5.1E-37 191.0 17.9 203 15-226 189-417 (423)
53 KOG0643 Translation initiation 100.0 4.6E-31 1E-35 177.0 22.1 206 12-227 3-220 (327)
54 KOG0294 WD40 repeat-containing 100.0 3E-31 6.6E-36 181.5 21.0 209 7-228 31-282 (362)
55 KOG0276 Vesicle coat complex C 100.0 1.5E-31 3.4E-36 197.9 21.0 204 15-227 9-215 (794)
56 KOG0310 Conserved WD40 repeat- 100.0 7.7E-32 1.7E-36 193.7 18.8 199 17-226 66-267 (487)
57 KOG0265 U5 snRNP-specific prot 100.0 3.1E-31 6.7E-36 180.3 19.8 204 10-224 81-335 (338)
58 KOG0643 Translation initiation 100.0 1.1E-30 2.4E-35 175.2 21.9 207 9-224 42-314 (327)
59 KOG0306 WD40-repeat-containing 100.0 1.8E-31 3.9E-36 201.0 19.1 205 16-226 451-663 (888)
60 KOG0273 Beta-transducin family 100.0 1.5E-30 3.1E-35 186.7 22.5 214 1-228 302-524 (524)
61 KOG0318 WD40 repeat stress pro 100.0 3.9E-30 8.4E-35 186.8 24.3 207 12-227 52-265 (603)
62 KOG0275 Conserved WD40 repeat- 100.0 1.1E-32 2.4E-37 190.1 10.5 206 17-226 211-422 (508)
63 KOG0275 Conserved WD40 repeat- 100.0 6E-33 1.3E-37 191.4 8.8 218 1-225 239-507 (508)
64 KOG0316 Conserved WD40 repeat- 100.0 2.2E-30 4.7E-35 171.0 18.2 211 1-227 43-257 (307)
65 KOG0283 WD40 repeat-containing 100.0 1.1E-30 2.4E-35 198.6 19.2 207 10-226 360-575 (712)
66 PTZ00421 coronin; Provisional 100.0 1.6E-29 3.5E-34 192.4 25.3 203 1-208 102-314 (493)
67 KOG0283 WD40 repeat-containing 100.0 4.7E-30 1E-34 195.2 21.6 200 17-226 265-531 (712)
68 KOG1407 WD40 repeat protein [F 100.0 4.7E-30 1E-34 171.6 18.6 204 13-226 14-218 (313)
69 KOG0292 Vesicle coat complex C 100.0 2.2E-30 4.8E-35 198.6 19.4 202 17-227 7-236 (1202)
70 KOG0289 mRNA splicing factor [ 100.0 5.9E-30 1.3E-34 182.0 20.1 208 11-225 253-460 (506)
71 KOG0264 Nucleosome remodeling 100.0 2.2E-30 4.7E-35 184.7 17.9 213 12-227 117-347 (422)
72 KOG0281 Beta-TrCP (transducin 100.0 6.2E-32 1.3E-36 187.7 9.3 209 1-227 261-477 (499)
73 KOG0269 WD40 repeat-containing 100.0 4.2E-31 9E-36 199.5 14.4 215 1-222 114-335 (839)
74 KOG4283 Transcription-coupled 100.0 9.2E-30 2E-34 173.3 18.4 204 17-226 41-275 (397)
75 KOG0296 Angio-associated migra 100.0 5.5E-29 1.2E-33 173.5 22.5 205 12-225 57-261 (399)
76 KOG1446 Histone H3 (Lys4) meth 100.0 2.9E-28 6.3E-33 167.0 24.5 204 18-227 13-262 (311)
77 KOG0289 mRNA splicing factor [ 100.0 2.5E-29 5.3E-34 178.9 19.9 201 19-227 219-419 (506)
78 PTZ00420 coronin; Provisional 100.0 4.9E-28 1.1E-32 185.5 27.8 180 37-227 50-248 (568)
79 KOG0274 Cdc4 and related F-box 100.0 8.9E-29 1.9E-33 188.9 21.5 201 10-227 239-441 (537)
80 KOG1446 Histone H3 (Lys4) meth 100.0 7E-28 1.5E-32 165.1 23.6 207 10-225 91-301 (311)
81 KOG0772 Uncharacterized conser 100.0 4.3E-29 9.3E-34 181.3 18.6 216 11-227 159-394 (641)
82 KOG0646 WD40 repeat protein [G 100.0 1.7E-28 3.6E-33 175.8 21.3 199 17-226 79-306 (476)
83 KOG0772 Uncharacterized conser 100.0 1.3E-29 2.7E-34 184.0 15.7 211 13-224 262-484 (641)
84 KOG0288 WD40 repeat protein Ti 100.0 1.3E-29 2.8E-34 179.1 15.2 212 1-225 245-459 (459)
85 KOG0973 Histone transcription 100.0 1.9E-28 4.1E-33 191.1 21.9 214 10-226 60-354 (942)
86 KOG0647 mRNA export protein (c 100.0 3.2E-28 6.9E-33 166.0 19.5 201 18-226 26-280 (347)
87 KOG0641 WD40 repeat protein [G 100.0 2.8E-27 6E-32 156.0 22.9 208 14-227 84-303 (350)
88 KOG1407 WD40 repeat protein [F 100.0 2.1E-28 4.6E-33 163.7 17.6 210 2-223 47-257 (313)
89 KOG0310 Conserved WD40 repeat- 100.0 1.3E-27 2.8E-32 172.2 20.2 197 14-223 105-305 (487)
90 KOG0302 Ribosome Assembly prot 100.0 7.8E-28 1.7E-32 168.5 18.4 215 8-226 200-437 (440)
91 KOG0306 WD40-repeat-containing 100.0 1.8E-27 4E-32 179.6 21.7 205 12-227 366-580 (888)
92 KOG0268 Sof1-like rRNA process 100.0 4.8E-29 1E-33 173.8 12.0 202 13-226 60-301 (433)
93 KOG1332 Vesicle coat complex C 100.0 5.3E-28 1.2E-32 160.5 16.0 215 10-227 47-286 (299)
94 KOG2096 WD40 repeat protein [G 100.0 1.6E-27 3.5E-32 164.0 18.6 206 15-227 82-308 (420)
95 KOG0269 WD40 repeat-containing 100.0 1.1E-28 2.5E-33 186.4 12.3 202 21-227 89-296 (839)
96 KOG0288 WD40 repeat protein Ti 100.0 3.9E-28 8.5E-33 171.7 14.2 214 1-227 201-417 (459)
97 KOG0308 Conserved WD40 repeat- 100.0 6.2E-28 1.3E-32 179.4 15.8 210 12-227 66-285 (735)
98 KOG1332 Vesicle coat complex C 100.0 2.1E-28 4.5E-33 162.4 11.8 209 17-226 9-240 (299)
99 KOG0639 Transducin-like enhanc 100.0 6.5E-28 1.4E-32 175.0 15.2 220 1-227 444-704 (705)
100 KOG0267 Microtubule severing p 100.0 7.5E-29 1.6E-33 186.3 10.2 197 12-218 63-259 (825)
101 KOG0300 WD40 repeat-containing 100.0 1.1E-27 2.5E-32 165.0 14.5 206 12-227 141-386 (481)
102 KOG0302 Ribosome Assembly prot 100.0 3.8E-27 8.3E-32 165.1 16.9 212 12-228 144-379 (440)
103 KOG0973 Histone transcription 100.0 1.4E-26 3.1E-31 180.8 21.3 203 19-226 13-311 (942)
104 KOG0299 U3 snoRNP-associated p 100.0 5.6E-27 1.2E-31 167.8 17.2 207 13-227 136-356 (479)
105 KOG0268 Sof1-like rRNA process 100.0 1.2E-27 2.5E-32 167.0 13.3 215 1-226 93-344 (433)
106 KOG1408 WD40 repeat protein [F 100.0 2.6E-27 5.7E-32 178.5 16.1 205 17-227 457-713 (1080)
107 KOG0274 Cdc4 and related F-box 100.0 6.1E-26 1.3E-30 173.5 23.7 194 18-227 207-400 (537)
108 KOG0299 U3 snoRNP-associated p 100.0 1.1E-26 2.3E-31 166.4 18.2 199 17-226 200-409 (479)
109 KOG0267 Microtubule severing p 100.0 1.2E-28 2.6E-33 185.2 8.4 204 14-227 23-226 (825)
110 KOG1036 Mitotic spindle checkp 100.0 7.5E-26 1.6E-30 154.7 19.8 201 14-227 49-262 (323)
111 KOG4328 WD40 protein [Function 100.0 9.7E-27 2.1E-31 166.6 16.1 212 12-226 179-398 (498)
112 KOG0300 WD40 repeat-containing 100.0 1.1E-26 2.4E-31 160.1 15.8 217 1-227 174-428 (481)
113 KOG0308 Conserved WD40 repeat- 99.9 2E-26 4.4E-31 171.5 16.5 220 1-227 99-327 (735)
114 KOG0270 WD40 repeat-containing 99.9 4.5E-26 9.7E-31 162.6 16.7 201 21-227 175-404 (463)
115 KOG0639 Transducin-like enhanc 99.9 7.3E-27 1.6E-31 169.6 12.2 210 11-226 411-662 (705)
116 KOG0305 Anaphase promoting com 99.9 1.1E-25 2.3E-30 167.1 18.1 192 24-227 182-376 (484)
117 KOG1274 WD40 repeat protein [G 99.9 4.3E-25 9.3E-30 170.0 21.6 201 18-227 55-262 (933)
118 KOG0270 WD40 repeat-containing 99.9 1.5E-25 3.2E-30 160.0 17.6 202 17-227 241-449 (463)
119 KOG2445 Nuclear pore complex c 99.9 8E-25 1.7E-29 149.9 20.0 207 17-227 11-318 (361)
120 KOG0647 mRNA export protein (c 99.9 5.5E-25 1.2E-29 150.3 19.0 207 2-215 55-311 (347)
121 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.3E-23 2.8E-28 153.4 27.6 198 20-227 73-279 (300)
122 KOG0278 Serine/threonine kinas 99.9 2.3E-25 5.1E-30 148.7 16.4 177 1-189 126-302 (334)
123 KOG1273 WD40 repeat protein [G 99.9 8E-25 1.7E-29 150.6 19.3 202 16-227 21-226 (405)
124 KOG1539 WD repeat protein [Gen 99.9 5.8E-25 1.3E-29 167.8 19.5 198 19-225 448-646 (910)
125 KOG0301 Phospholipase A2-activ 99.9 7.2E-25 1.6E-29 164.3 19.1 198 8-226 90-287 (745)
126 KOG2048 WD40 repeat protein [G 99.9 1.3E-23 2.9E-28 157.1 24.1 218 1-226 51-274 (691)
127 KOG0303 Actin-binding protein 99.9 1.1E-24 2.4E-29 153.8 17.4 206 16-227 78-294 (472)
128 KOG2055 WD40 repeat protein [G 99.9 3.5E-24 7.5E-29 153.9 20.0 199 19-226 213-416 (514)
129 KOG0307 Vesicle coat complex C 99.9 3.7E-26 7.9E-31 179.4 10.8 210 17-227 62-284 (1049)
130 KOG0293 WD40 repeat-containing 99.9 1.3E-25 2.7E-30 159.4 12.3 172 9-185 259-514 (519)
131 KOG2055 WD40 repeat protein [G 99.9 8.2E-24 1.8E-28 152.0 20.6 212 10-227 248-512 (514)
132 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2E-22 4.3E-27 147.2 27.2 213 1-227 15-237 (300)
133 KOG0321 WD40 repeat-containing 99.9 2.1E-24 4.6E-29 160.6 16.7 225 1-227 126-391 (720)
134 KOG1273 WD40 repeat protein [G 99.9 4.9E-24 1.1E-28 146.7 16.5 221 1-226 49-321 (405)
135 KOG0301 Phospholipase A2-activ 99.9 5.1E-24 1.1E-28 159.8 17.3 195 14-226 52-248 (745)
136 KOG2096 WD40 repeat protein [G 99.9 1.2E-23 2.6E-28 145.1 17.3 198 18-225 186-400 (420)
137 KOG2048 WD40 repeat protein [G 99.9 2.3E-22 5E-27 150.6 25.4 203 18-227 24-233 (691)
138 KOG1539 WD repeat protein [Gen 99.9 2.8E-22 6E-27 153.4 24.7 220 1-227 186-606 (910)
139 KOG0307 Vesicle coat complex C 99.9 6.6E-25 1.4E-29 172.5 10.7 211 12-227 109-327 (1049)
140 KOG0294 WD40 repeat-containing 99.9 1.3E-22 2.7E-27 139.6 19.8 192 2-205 68-305 (362)
141 KOG4378 Nuclear protein COP1 [ 99.9 8.4E-24 1.8E-28 153.6 14.6 200 21-228 81-281 (673)
142 KOG4378 Nuclear protein COP1 [ 99.9 2.6E-23 5.6E-28 151.1 16.5 198 1-209 105-305 (673)
143 KOG4283 Transcription-coupled 99.9 4.5E-23 9.8E-28 140.9 16.4 163 17-187 99-279 (397)
144 KOG4328 WD40 protein [Function 99.9 1.9E-23 4.1E-28 149.9 15.1 221 1-226 214-449 (498)
145 KOG0646 WD40 repeat protein [G 99.9 2.7E-23 5.8E-28 149.4 15.3 200 1-208 107-330 (476)
146 KOG1036 Mitotic spindle checkp 99.9 3.6E-22 7.7E-27 136.9 20.0 198 11-217 86-294 (323)
147 KOG1274 WD40 repeat protein [G 99.9 2.2E-22 4.9E-27 155.3 20.9 189 17-215 94-288 (933)
148 KOG0290 Conserved WD40 repeat- 99.9 6.9E-23 1.5E-27 139.6 15.5 208 16-227 93-318 (364)
149 KOG1007 WD repeat protein TSSC 99.9 2.3E-22 5.1E-27 137.0 17.9 202 18-225 122-359 (370)
150 KOG0641 WD40 repeat protein [G 99.9 3.2E-21 7E-26 127.5 22.6 207 11-226 128-348 (350)
151 KOG1408 WD40 repeat protein [F 99.9 1.4E-22 3E-27 153.4 18.1 223 1-226 350-670 (1080)
152 KOG2106 Uncharacterized conser 99.9 3.2E-21 6.8E-26 140.5 24.4 213 1-226 184-476 (626)
153 KOG0650 WD40 repeat nucleolar 99.9 9.8E-23 2.1E-27 151.0 16.9 204 11-225 392-678 (733)
154 KOG1007 WD repeat protein TSSC 99.9 1.1E-22 2.3E-27 138.6 15.5 207 16-226 60-288 (370)
155 KOG1063 RNA polymerase II elon 99.9 7.5E-23 1.6E-27 153.6 16.1 212 10-227 516-763 (764)
156 KOG0771 Prolactin regulatory e 99.9 1.1E-22 2.4E-27 144.6 15.7 199 23-227 148-354 (398)
157 KOG1009 Chromatin assembly com 99.9 2E-22 4.4E-27 142.8 16.4 206 14-223 60-368 (434)
158 KOG0321 WD40 repeat-containing 99.9 2.3E-22 4.9E-27 149.9 16.5 210 13-227 94-347 (720)
159 KOG2919 Guanine nucleotide-bin 99.9 1.5E-22 3.1E-27 139.9 14.1 213 1-218 137-361 (406)
160 KOG1063 RNA polymerase II elon 99.9 3.5E-22 7.7E-27 150.1 16.8 207 14-226 356-647 (764)
161 KOG1034 Transcriptional repres 99.9 6E-23 1.3E-27 141.9 11.7 211 13-227 129-383 (385)
162 KOG2106 Uncharacterized conser 99.9 1E-20 2.3E-25 137.8 23.7 203 12-226 361-625 (626)
163 KOG2919 Guanine nucleotide-bin 99.9 2E-21 4.4E-26 134.3 18.2 206 18-227 103-327 (406)
164 KOG0642 Cell-cycle nuclear pro 99.9 2.1E-22 4.6E-27 148.0 14.0 215 8-226 333-560 (577)
165 KOG1445 Tumor-specific antigen 99.9 1E-22 2.2E-27 152.3 11.8 207 17-227 625-844 (1012)
166 KOG1587 Cytoplasmic dynein int 99.9 3.5E-21 7.5E-26 146.8 19.2 223 1-227 226-472 (555)
167 KOG1538 Uncharacterized conser 99.9 4.4E-20 9.6E-25 139.2 20.3 218 1-227 37-293 (1081)
168 KOG1188 WD40 repeat protein [G 99.9 2.7E-21 5.8E-26 134.4 12.5 211 9-225 60-344 (376)
169 PRK11028 6-phosphogluconolacto 99.9 2.4E-19 5.3E-24 132.6 23.9 206 18-226 78-303 (330)
170 KOG2110 Uncharacterized conser 99.9 1.4E-18 3E-23 122.2 25.1 160 19-185 87-249 (391)
171 KOG1188 WD40 repeat protein [G 99.9 1.8E-20 3.8E-25 130.4 15.5 190 32-227 41-242 (376)
172 PRK01742 tolB translocation pr 99.9 1E-19 2.2E-24 138.6 21.0 196 13-226 197-400 (429)
173 KOG0322 G-protein beta subunit 99.9 5.9E-21 1.3E-25 128.6 12.3 146 79-226 167-322 (323)
174 KOG0649 WD40 repeat protein [G 99.9 3.3E-19 7.1E-24 119.1 20.5 206 10-226 53-273 (325)
175 PRK11028 6-phosphogluconolacto 99.9 9.8E-19 2.1E-23 129.4 25.5 221 2-226 17-257 (330)
176 KOG4227 WD40 repeat protein [G 99.9 1.4E-20 3E-25 133.7 14.3 212 15-226 52-273 (609)
177 KOG1009 Chromatin assembly com 99.9 3.2E-20 6.9E-25 131.7 14.9 193 19-216 13-249 (434)
178 KOG1272 WD40-repeat-containing 99.9 1.7E-21 3.7E-26 140.4 8.0 196 19-228 129-324 (545)
179 KOG1523 Actin-related protein 99.9 2.3E-19 4.9E-24 124.0 17.7 205 18-225 9-234 (361)
180 KOG0303 Actin-binding protein 99.9 1.3E-19 2.8E-24 128.5 16.8 192 10-207 122-319 (472)
181 COG2319 FOG: WD40 repeat [Gene 99.9 4.9E-18 1.1E-22 129.2 26.8 197 20-227 110-314 (466)
182 KOG0290 Conserved WD40 repeat- 99.8 1.4E-19 3E-24 123.7 15.3 201 17-223 148-361 (364)
183 KOG1310 WD40 repeat protein [G 99.8 6.4E-20 1.4E-24 135.2 12.7 211 12-227 43-303 (758)
184 KOG2394 WD40 protein DMR-N9 [G 99.8 1.9E-19 4.2E-24 132.2 14.4 172 29-206 183-383 (636)
185 KOG0649 WD40 repeat protein [G 99.8 1.7E-18 3.6E-23 115.8 17.4 198 21-227 12-235 (325)
186 COG2319 FOG: WD40 repeat [Gene 99.8 2.9E-17 6.2E-22 125.0 26.8 206 14-227 60-271 (466)
187 KOG0650 WD40 repeat nucleolar 99.8 4.8E-19 1E-23 131.7 15.2 201 13-224 515-732 (733)
188 KOG1034 Transcriptional repres 99.8 8.1E-19 1.8E-23 121.7 15.2 204 17-226 36-278 (385)
189 PRK03629 tolB translocation pr 99.8 2.4E-17 5.1E-22 125.5 24.4 197 15-225 194-404 (429)
190 PF08662 eIF2A: Eukaryotic tra 99.8 8.9E-18 1.9E-22 114.0 19.5 157 23-192 9-186 (194)
191 KOG1524 WD40 repeat-containing 99.8 8.2E-19 1.8E-23 129.2 14.9 182 16-223 101-282 (737)
192 KOG0644 Uncharacterized conser 99.8 2.2E-20 4.7E-25 143.6 6.9 204 12-226 183-425 (1113)
193 KOG2110 Uncharacterized conser 99.8 6.7E-17 1.5E-21 113.9 23.1 195 21-227 48-248 (391)
194 PF08662 eIF2A: Eukaryotic tra 99.8 1.2E-17 2.7E-22 113.3 18.9 149 69-226 9-178 (194)
195 KOG1445 Tumor-specific antigen 99.8 1.4E-18 3.1E-23 130.5 15.0 213 11-226 71-292 (1012)
196 KOG3881 Uncharacterized conser 99.8 1.1E-17 2.4E-22 118.5 18.4 203 19-227 105-320 (412)
197 KOG1517 Guanine nucleotide bin 99.8 5.1E-18 1.1E-22 133.8 18.0 207 20-228 1065-1288(1387)
198 PRK04922 tolB translocation pr 99.8 5.3E-17 1.1E-21 124.1 22.6 199 13-225 197-409 (433)
199 PRK05137 tolB translocation pr 99.8 1E-16 2.2E-21 122.6 24.2 191 13-217 195-396 (435)
200 KOG2445 Nuclear pore complex c 99.8 2.4E-17 5.2E-22 113.6 18.3 159 65-227 13-256 (361)
201 KOG1240 Protein kinase contain 99.8 2.4E-17 5.2E-22 131.6 20.3 219 8-227 1037-1273(1431)
202 KOG0642 Cell-cycle nuclear pro 99.8 1.5E-18 3.2E-23 128.1 12.6 212 11-226 286-518 (577)
203 KOG1517 Guanine nucleotide bin 99.8 1.2E-17 2.6E-22 131.7 18.1 225 1-227 1090-1333(1387)
204 KOG2139 WD40 repeat protein [G 99.8 4.1E-17 9E-22 114.9 18.3 194 18-218 139-366 (445)
205 KOG1587 Cytoplasmic dynein int 99.8 4E-17 8.7E-22 124.9 18.5 221 1-226 269-515 (555)
206 KOG1524 WD40 repeat-containing 99.8 4.7E-18 1E-22 125.3 12.8 196 17-226 12-215 (737)
207 PRK02889 tolB translocation pr 99.8 2E-16 4.3E-21 120.6 22.1 193 13-219 189-392 (427)
208 KOG1963 WD40 repeat protein [G 99.8 9.8E-17 2.1E-21 124.0 19.6 164 17-185 203-376 (792)
209 KOG1538 Uncharacterized conser 99.8 1.9E-16 4E-21 120.0 20.0 197 21-225 14-250 (1081)
210 KOG0771 Prolactin regulatory e 99.8 9.4E-18 2E-22 119.8 12.5 155 69-227 148-311 (398)
211 KOG2394 WD40 protein DMR-N9 [G 99.8 3E-17 6.4E-22 120.9 14.8 139 19-162 219-383 (636)
212 KOG2139 WD40 repeat protein [G 99.8 2E-16 4.3E-21 111.5 17.2 188 19-216 98-299 (445)
213 KOG1523 Actin-related protein 99.8 9.5E-17 2.1E-21 111.2 14.8 160 65-227 10-176 (361)
214 KOG2111 Uncharacterized conser 99.7 1.7E-14 3.7E-19 100.2 23.7 205 10-222 85-317 (346)
215 PRK00178 tolB translocation pr 99.7 8.3E-15 1.8E-19 112.3 24.6 192 13-218 192-394 (430)
216 KOG1310 WD40 repeat protein [G 99.7 2.4E-17 5.2E-22 121.9 10.1 166 60-227 46-231 (758)
217 KOG4547 WD40 repeat-containing 99.7 3.2E-15 7E-20 111.3 20.7 191 29-226 3-219 (541)
218 KOG2111 Uncharacterized conser 99.7 2.4E-14 5.2E-19 99.4 23.1 177 41-227 75-256 (346)
219 TIGR02800 propeller_TolB tol-p 99.7 6.7E-15 1.5E-19 112.5 22.9 193 13-219 183-386 (417)
220 KOG4227 WD40 repeat protein [G 99.7 3.1E-16 6.7E-21 111.9 14.1 162 65-228 56-226 (609)
221 PF02239 Cytochrom_D1: Cytochr 99.7 4.6E-14 9.9E-19 105.0 25.3 188 32-226 6-201 (369)
222 PRK01742 tolB translocation pr 99.7 1.3E-15 2.8E-20 116.3 17.5 172 40-226 183-360 (429)
223 KOG1272 WD40-repeat-containing 99.7 1.5E-17 3.3E-22 120.4 6.0 193 17-225 168-360 (545)
224 PF02239 Cytochrom_D1: Cytochr 99.7 1.5E-13 3.2E-18 102.3 27.0 164 22-191 39-209 (369)
225 KOG0974 WD-repeat protein WDR6 99.7 1.6E-15 3.4E-20 119.5 17.1 193 25-226 93-287 (967)
226 KOG2321 WD40 repeat protein [G 99.7 3.4E-15 7.3E-20 111.2 17.4 209 14-226 46-301 (703)
227 KOG2321 WD40 repeat protein [G 99.7 1.5E-15 3.3E-20 113.0 15.3 193 22-224 136-340 (703)
228 PRK04792 tolB translocation pr 99.7 5.2E-14 1.1E-18 107.9 23.5 189 15-217 213-412 (448)
229 KOG4497 Uncharacterized conser 99.7 3.2E-15 6.9E-20 104.4 14.9 189 24-225 13-238 (447)
230 KOG1334 WD40 repeat protein [G 99.7 7.6E-16 1.7E-20 112.3 12.1 212 13-226 136-465 (559)
231 KOG1963 WD40 repeat protein [G 99.7 1.7E-14 3.6E-19 112.0 19.1 201 22-227 163-375 (792)
232 KOG3881 Uncharacterized conser 99.7 1.5E-14 3.3E-19 102.8 16.4 181 20-207 149-341 (412)
233 KOG0644 Uncharacterized conser 99.7 1.1E-16 2.4E-21 123.6 6.1 204 10-225 223-466 (1113)
234 PRK03629 tolB translocation pr 99.7 3.1E-14 6.7E-19 108.6 18.9 175 19-207 242-427 (429)
235 KOG0322 G-protein beta subunit 99.7 3.4E-16 7.4E-21 105.9 7.2 135 1-138 179-322 (323)
236 PRK05137 tolB translocation pr 99.7 1.5E-13 3.2E-18 105.4 22.3 173 41-226 182-365 (435)
237 KOG1354 Serine/threonine prote 99.7 1E-14 2.2E-19 102.5 14.2 210 17-228 23-302 (433)
238 KOG1240 Protein kinase contain 99.7 1.1E-13 2.3E-18 111.4 21.5 210 17-227 1096-1334(1431)
239 PF10282 Lactonase: Lactonase, 99.6 8.6E-12 1.9E-16 92.8 29.9 207 18-226 85-321 (345)
240 PRK01029 tolB translocation pr 99.6 5.1E-13 1.1E-17 101.8 23.6 200 17-226 182-402 (428)
241 PRK02889 tolB translocation pr 99.6 9E-14 1.9E-18 106.2 19.2 173 41-226 176-359 (427)
242 PRK04922 tolB translocation pr 99.6 9.7E-14 2.1E-18 106.3 19.5 173 41-226 184-367 (433)
243 KOG0280 Uncharacterized conser 99.6 2.3E-13 5.1E-18 93.7 16.3 185 19-208 69-264 (339)
244 KOG0280 Uncharacterized conser 99.6 1.4E-12 3E-17 90.0 19.2 186 39-227 44-241 (339)
245 TIGR02800 propeller_TolB tol-p 99.6 1.3E-12 2.8E-17 100.0 21.3 173 41-226 170-353 (417)
246 KOG4497 Uncharacterized conser 99.6 8.1E-13 1.8E-17 92.7 17.9 203 14-226 86-390 (447)
247 KOG2315 Predicted translation 99.6 5.3E-12 1.1E-16 94.1 22.5 197 18-226 164-389 (566)
248 PF10282 Lactonase: Lactonase, 99.6 7.4E-11 1.6E-15 87.8 27.7 207 17-226 34-274 (345)
249 KOG1064 RAVE (regulator of V-A 99.5 9.8E-14 2.1E-18 115.3 11.5 190 17-227 2206-2398(2439)
250 TIGR02658 TTQ_MADH_Hv methylam 99.5 2.5E-10 5.4E-15 83.7 27.9 197 27-226 53-329 (352)
251 KOG4547 WD40 repeat-containing 99.5 8.4E-12 1.8E-16 93.5 19.6 146 32-185 71-221 (541)
252 COG4946 Uncharacterized protei 99.5 2.8E-11 6.2E-16 89.0 21.6 121 17-144 357-482 (668)
253 COG2706 3-carboxymuconate cycl 99.5 9.7E-11 2.1E-15 83.3 23.2 213 12-226 32-273 (346)
254 PRK00178 tolB translocation pr 99.5 2.9E-11 6.3E-16 92.9 21.7 172 42-226 180-362 (430)
255 PRK01029 tolB translocation pr 99.5 1.9E-11 4.1E-16 93.3 19.6 181 18-209 229-426 (428)
256 KOG0974 WD-repeat protein WDR6 99.5 3.6E-13 7.8E-18 106.5 10.0 131 1-140 159-289 (967)
257 PRK04043 tolB translocation pr 99.5 2E-10 4.3E-15 87.3 24.5 182 20-217 188-387 (419)
258 COG2706 3-carboxymuconate cycl 99.5 8.2E-10 1.8E-14 78.7 25.3 205 20-226 89-320 (346)
259 PF15492 Nbas_N: Neuroblastoma 99.5 3.9E-10 8.4E-15 78.0 22.9 200 25-227 3-259 (282)
260 PRK04792 tolB translocation pr 99.5 3.6E-11 7.7E-16 92.4 20.0 171 42-225 199-378 (448)
261 KOG4190 Uncharacterized conser 99.5 1.3E-13 2.8E-18 103.1 6.1 208 11-223 727-943 (1034)
262 KOG4714 Nucleoporin [Nuclear s 99.4 1.1E-12 2.4E-17 89.1 9.2 199 22-227 39-254 (319)
263 KOG1064 RAVE (regulator of V-A 99.4 2.3E-12 4.9E-17 107.6 12.5 159 65-227 2208-2366(2439)
264 PLN02919 haloacid dehalogenase 99.4 6.3E-10 1.4E-14 93.3 25.5 205 21-227 625-888 (1057)
265 KOG1354 Serine/threonine prote 99.4 9.7E-12 2.1E-16 87.8 12.2 205 18-226 83-358 (433)
266 KOG1409 Uncharacterized conser 99.4 2.3E-11 5.1E-16 85.8 14.0 160 15-185 110-271 (404)
267 KOG2695 WD40 repeat protein [G 99.4 3.4E-12 7.3E-17 90.1 9.6 163 35-207 228-402 (425)
268 COG5170 CDC55 Serine/threonine 99.4 1.2E-11 2.7E-16 86.3 12.3 209 18-228 25-310 (460)
269 KOG4532 WD40-like repeat conta 99.4 4E-10 8.6E-15 77.3 19.2 198 24-227 72-282 (344)
270 KOG1409 Uncharacterized conser 99.4 5.2E-11 1.1E-15 84.1 15.0 201 19-227 68-270 (404)
271 PF04762 IKI3: IKI3 family; I 99.4 3.2E-10 7E-15 93.5 21.6 197 19-226 75-332 (928)
272 KOG2041 WD40 repeat protein [G 99.4 2E-11 4.3E-16 94.1 12.8 121 18-139 13-145 (1189)
273 KOG0309 Conserved WD40 repeat- 99.4 1E-11 2.3E-16 95.8 11.0 218 1-226 95-338 (1081)
274 COG4946 Uncharacterized protei 99.3 1.1E-09 2.4E-14 80.9 20.2 175 27-215 327-506 (668)
275 KOG3914 WD repeat protein WDR4 99.3 4E-11 8.6E-16 86.1 12.1 160 22-192 65-231 (390)
276 KOG2315 Predicted translation 99.3 3.5E-10 7.5E-15 84.7 16.9 150 41-207 251-410 (566)
277 KOG1334 WD40 repeat protein [G 99.3 9.4E-12 2E-16 91.4 8.4 163 64-227 141-312 (559)
278 KOG3914 WD repeat protein WDR4 99.3 1.2E-10 2.5E-15 83.8 12.5 153 67-227 64-223 (390)
279 KOG0309 Conserved WD40 repeat- 99.3 3.3E-11 7.1E-16 93.1 10.4 211 8-226 14-231 (1081)
280 KOG1275 PAB-dependent poly(A) 99.3 2.3E-10 5E-15 90.3 15.0 183 30-225 146-340 (1118)
281 KOG2695 WD40 repeat protein [G 99.3 1E-11 2.3E-16 87.6 6.5 132 18-149 251-386 (425)
282 PF07433 DUF1513: Protein of u 99.3 1.7E-08 3.7E-13 71.9 22.1 183 25-217 56-276 (305)
283 PF08450 SGL: SMP-30/Gluconola 99.3 1E-07 2.3E-12 67.8 27.9 190 24-226 4-212 (246)
284 PF08450 SGL: SMP-30/Gluconola 99.2 1.5E-07 3.1E-12 67.1 25.8 185 22-215 42-244 (246)
285 PLN02919 haloacid dehalogenase 99.2 4.3E-08 9.2E-13 82.6 25.9 201 23-226 571-832 (1057)
286 TIGR02658 TTQ_MADH_Hv methylam 99.2 5E-08 1.1E-12 71.8 22.5 103 41-149 27-146 (352)
287 KOG4190 Uncharacterized conser 99.2 2.9E-11 6.3E-16 90.8 5.7 161 65-227 735-906 (1034)
288 PF04762 IKI3: IKI3 family; I 99.2 2.9E-08 6.2E-13 82.3 22.8 201 18-226 208-455 (928)
289 KOG4532 WD40-like repeat conta 99.2 1.4E-08 3E-13 69.9 17.2 180 33-217 130-322 (344)
290 KOG2314 Translation initiation 99.2 5.7E-09 1.2E-13 78.5 16.7 216 1-226 286-572 (698)
291 KOG2066 Vacuolar assembly/sort 99.2 7.1E-09 1.5E-13 81.1 17.7 143 30-184 82-233 (846)
292 COG5354 Uncharacterized protei 99.2 4.4E-08 9.5E-13 73.0 20.6 192 20-226 174-394 (561)
293 PF13360 PQQ_2: PQQ-like domai 99.2 5.1E-08 1.1E-12 69.0 20.6 184 30-227 35-230 (238)
294 PF00400 WD40: WD domain, G-be 99.1 1.6E-10 3.6E-15 57.1 5.2 38 187-225 2-39 (39)
295 PRK04043 tolB translocation pr 99.1 7.8E-08 1.7E-12 73.4 21.8 142 67-218 189-339 (419)
296 KOG4714 Nucleoporin [Nuclear s 99.1 2.1E-09 4.6E-14 73.4 11.1 190 28-226 98-317 (319)
297 COG5354 Uncharacterized protei 99.1 3.9E-08 8.5E-13 73.3 18.2 199 18-227 31-306 (561)
298 KOG1832 HIV-1 Vpr-binding prot 99.1 6.3E-11 1.4E-15 93.5 4.1 192 13-227 1095-1291(1516)
299 PF00400 WD40: WD domain, G-be 99.1 6.4E-10 1.4E-14 55.0 6.4 37 11-47 3-39 (39)
300 KOG2314 Translation initiation 99.1 1.7E-08 3.6E-13 76.1 15.5 182 22-214 213-410 (698)
301 KOG1920 IkappaB kinase complex 99.0 6.7E-08 1.5E-12 79.0 18.6 198 20-226 69-321 (1265)
302 KOG1645 RING-finger-containing 99.0 3.9E-08 8.4E-13 71.3 15.2 206 13-226 187-460 (463)
303 KOG1912 WD40 repeat protein [G 99.0 7.4E-08 1.6E-12 75.6 17.4 209 10-226 46-303 (1062)
304 TIGR03300 assembly_YfgL outer 99.0 1.8E-07 3.9E-12 70.9 18.9 180 32-224 191-376 (377)
305 PF07433 DUF1513: Protein of u 99.0 1.9E-06 4.1E-11 61.7 22.5 201 20-226 5-246 (305)
306 PF11768 DUF3312: Protein of u 99.0 7.9E-08 1.7E-12 73.2 16.1 125 13-142 199-332 (545)
307 COG5170 CDC55 Serine/threonine 99.0 2E-08 4.4E-13 70.6 12.0 203 19-224 85-364 (460)
308 KOG2066 Vacuolar assembly/sort 99.0 1.1E-07 2.5E-12 74.6 17.0 184 19-226 39-232 (846)
309 KOG2114 Vacuolar assembly/sort 99.0 2E-07 4.4E-12 73.8 18.2 194 26-226 30-242 (933)
310 PF15492 Nbas_N: Neuroblastoma 99.0 3.8E-07 8.2E-12 63.6 17.4 171 21-192 45-267 (282)
311 KOG0882 Cyclophilin-related pe 99.0 1.6E-08 3.6E-13 74.3 11.1 207 16-226 6-230 (558)
312 PF11768 DUF3312: Protein of u 99.0 2E-08 4.4E-13 76.2 11.9 78 14-97 254-331 (545)
313 KOG2041 WD40 repeat protein [G 98.9 8.1E-09 1.8E-13 80.2 9.6 157 65-226 14-185 (1189)
314 TIGR03300 assembly_YfgL outer 98.9 6.5E-07 1.4E-11 67.9 19.2 183 30-226 64-258 (377)
315 PF13360 PQQ_2: PQQ-like domai 98.9 3.9E-06 8.5E-11 59.4 21.7 146 39-194 1-150 (238)
316 PRK02888 nitrous-oxide reducta 98.9 1.3E-06 2.9E-11 68.2 20.0 186 30-226 140-403 (635)
317 KOG1008 Uncharacterized conser 98.9 4.2E-10 9E-15 85.8 0.9 201 18-227 55-275 (783)
318 PF06977 SdiA-regulated: SdiA- 98.9 7.2E-06 1.6E-10 57.8 22.0 204 15-224 17-247 (248)
319 COG0823 TolB Periplasmic compo 98.8 1.5E-06 3.2E-11 66.2 17.4 185 17-214 190-386 (425)
320 KOG0882 Cyclophilin-related pe 98.8 2.1E-07 4.6E-12 68.6 11.9 207 15-226 49-304 (558)
321 PF04053 Coatomer_WDAD: Coatom 98.8 7.1E-06 1.5E-10 62.9 19.7 144 17-184 30-173 (443)
322 PRK02888 nitrous-oxide reducta 98.7 2.5E-06 5.3E-11 66.8 17.1 134 40-185 214-405 (635)
323 COG3391 Uncharacterized conser 98.7 3.8E-05 8.3E-10 58.3 23.3 194 22-225 76-281 (381)
324 KOG3617 WD40 and TPR repeat-co 98.7 5.3E-07 1.2E-11 71.8 12.9 71 21-95 61-131 (1416)
325 KOG1275 PAB-dependent poly(A) 98.7 5.3E-07 1.2E-11 72.1 12.9 150 21-183 179-341 (1118)
326 PF08596 Lgl_C: Lethal giant l 98.7 2.4E-05 5.1E-10 59.3 21.1 201 21-226 3-289 (395)
327 KOG1912 WD40 repeat protein [G 98.7 1.6E-06 3.5E-11 68.4 14.0 152 66-225 16-184 (1062)
328 KOG2114 Vacuolar assembly/sort 98.7 8.9E-06 1.9E-10 64.9 18.1 182 18-202 63-261 (933)
329 PRK11138 outer membrane biogen 98.6 2.6E-05 5.6E-10 59.6 20.2 182 32-226 206-393 (394)
330 PF04053 Coatomer_WDAD: Coatom 98.6 1.1E-05 2.5E-10 61.7 17.8 140 65-225 32-171 (443)
331 KOG3621 WD40 repeat-containing 98.6 1.5E-06 3.3E-11 67.6 12.6 120 18-140 32-155 (726)
332 KOG4640 Anaphase-promoting com 98.6 5.6E-07 1.2E-11 69.1 9.4 96 18-119 19-115 (665)
333 KOG4649 PQQ (pyrrolo-quinoline 98.6 6.4E-05 1.4E-09 52.3 18.4 123 31-163 23-145 (354)
334 PF03178 CPSF_A: CPSF A subuni 98.6 6E-05 1.3E-09 56.0 19.9 179 41-226 2-201 (321)
335 KOG1645 RING-finger-containing 98.6 1.3E-06 2.9E-11 63.7 10.3 75 65-142 193-269 (463)
336 PRK11138 outer membrane biogen 98.5 4.4E-05 9.5E-10 58.4 19.0 183 32-226 161-352 (394)
337 KOG3617 WD40 and TPR repeat-co 98.5 9.3E-07 2E-11 70.5 9.7 119 14-140 10-132 (1416)
338 COG0823 TolB Periplasmic compo 98.5 1.4E-05 3E-10 61.0 14.8 145 65-217 192-345 (425)
339 KOG1920 IkappaB kinase complex 98.5 8.4E-05 1.8E-09 61.8 19.7 157 65-226 68-273 (1265)
340 KOG1008 Uncharacterized conser 98.5 1.7E-08 3.7E-13 77.4 -0.9 164 16-185 99-276 (783)
341 PF14783 BBS2_Mid: Ciliary BBS 98.4 8.7E-05 1.9E-09 44.9 14.5 100 22-134 2-109 (111)
342 PF08553 VID27: VID27 cytoplas 98.4 8.2E-05 1.8E-09 60.6 17.1 144 78-226 494-646 (794)
343 PF08596 Lgl_C: Lethal giant l 98.4 0.00045 9.7E-09 52.5 20.0 197 17-217 84-326 (395)
344 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00042 9.1E-09 52.2 19.9 193 28-226 1-265 (353)
345 COG3391 Uncharacterized conser 98.3 0.00056 1.2E-08 52.0 21.4 164 20-192 116-291 (381)
346 KOG1832 HIV-1 Vpr-binding prot 98.3 6.3E-07 1.4E-11 71.8 4.7 149 65-227 1101-1255(1516)
347 PRK13616 lipoprotein LpqB; Pro 98.3 0.00025 5.5E-09 56.6 18.8 184 20-221 350-562 (591)
348 PF05694 SBP56: 56kDa selenium 98.3 0.00059 1.3E-08 51.5 20.1 208 20-227 65-342 (461)
349 PF14783 BBS2_Mid: Ciliary BBS 98.3 0.00015 3.3E-09 43.8 14.3 104 68-179 2-109 (111)
350 PF03178 CPSF_A: CPSF A subuni 98.3 0.00063 1.4E-08 50.6 24.7 197 18-223 22-261 (321)
351 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00075 1.6E-08 50.9 19.7 204 19-226 42-312 (353)
352 KOG3621 WD40 repeat-containing 98.3 1.2E-05 2.5E-10 62.9 10.1 116 109-226 33-153 (726)
353 KOG4640 Anaphase-promoting com 98.3 7.9E-06 1.7E-10 63.1 8.9 94 65-162 20-114 (665)
354 COG3490 Uncharacterized protei 98.2 0.00066 1.4E-08 48.1 17.1 190 26-224 120-345 (366)
355 smart00320 WD40 WD40 repeats. 98.2 5.4E-06 1.2E-10 39.9 5.1 36 189-225 5-40 (40)
356 PF08553 VID27: VID27 cytoplas 98.2 0.00011 2.4E-09 59.8 14.6 138 38-183 501-646 (794)
357 smart00320 WD40 WD40 repeats. 98.2 8.5E-06 1.8E-10 39.2 5.5 36 12-47 5-40 (40)
358 cd00216 PQQ_DH Dehydrogenases 98.2 0.001 2.2E-08 52.5 19.3 195 31-226 61-318 (488)
359 PF02897 Peptidase_S9_N: Proly 98.2 0.0017 3.6E-08 50.2 21.6 196 22-226 126-356 (414)
360 PF06433 Me-amine-dh_H: Methyl 98.2 0.00038 8.2E-09 50.9 14.9 195 24-227 99-320 (342)
361 PF05694 SBP56: 56kDa selenium 98.1 0.0018 3.9E-08 49.0 20.6 189 27-216 137-392 (461)
362 cd00216 PQQ_DH Dehydrogenases 98.1 0.0026 5.7E-08 50.2 19.4 160 25-193 222-433 (488)
363 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0013 2.7E-08 46.1 15.2 109 77-192 23-131 (354)
364 PF05096 Glu_cyclase_2: Glutam 98.0 0.0017 3.8E-08 45.9 23.7 193 12-215 35-249 (264)
365 COG3204 Uncharacterized protei 98.0 0.0018 4E-08 46.1 20.0 194 17-214 83-300 (316)
366 KOG2444 WD40 repeat protein [G 98.0 9.7E-06 2.1E-10 55.0 4.8 141 80-226 33-176 (238)
367 COG3386 Gluconolactonase [Carb 98.0 0.0027 5.8E-08 46.6 20.8 195 17-218 63-277 (307)
368 KOG2395 Protein involved in va 98.0 0.00036 7.8E-09 53.4 12.4 145 30-184 344-500 (644)
369 KOG2395 Protein involved in va 97.9 0.0014 3E-08 50.4 14.5 146 75-226 343-499 (644)
370 PF00780 CNH: CNH domain; Int 97.9 0.0039 8.5E-08 45.2 19.2 145 30-189 6-170 (275)
371 PHA02713 hypothetical protein; 97.9 0.0021 4.7E-08 51.4 16.3 186 30-226 303-532 (557)
372 PF04841 Vps16_N: Vps16, N-ter 97.9 0.0066 1.4E-07 46.8 20.3 170 42-226 62-245 (410)
373 PF06977 SdiA-regulated: SdiA- 97.9 0.004 8.7E-08 44.2 18.1 158 65-225 21-199 (248)
374 PF12894 Apc4_WD40: Anaphase-p 97.9 7.8E-05 1.7E-09 37.8 5.2 34 18-52 10-43 (47)
375 PRK13616 lipoprotein LpqB; Pro 97.9 0.0036 7.9E-08 50.3 16.9 149 66-227 350-525 (591)
376 PF02897 Peptidase_S9_N: Proly 97.9 0.0072 1.6E-07 46.7 19.2 116 68-186 126-262 (414)
377 KOG2079 Vacuolar assembly/sort 97.9 7.1E-05 1.5E-09 61.6 7.4 104 30-138 98-202 (1206)
378 COG3386 Gluconolactonase [Carb 97.9 0.0053 1.2E-07 45.1 20.4 191 25-226 30-242 (307)
379 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.011 2.4E-07 47.1 21.8 193 31-226 69-332 (527)
380 COG3490 Uncharacterized protei 97.8 0.0065 1.4E-07 43.3 15.6 148 66-215 68-243 (366)
381 KOG2079 Vacuolar assembly/sort 97.7 0.00027 5.8E-09 58.4 8.9 104 76-183 98-202 (1206)
382 PF12894 Apc4_WD40: Anaphase-p 97.7 0.00019 4.2E-09 36.4 5.0 33 65-98 11-43 (47)
383 PF04841 Vps16_N: Vps16, N-ter 97.7 0.016 3.4E-07 44.8 21.0 178 20-210 81-272 (410)
384 PF14583 Pectate_lyase22: Olig 97.6 0.0083 1.8E-07 45.0 14.6 164 47-214 16-204 (386)
385 KOG4441 Proteins containing BT 97.6 0.024 5.2E-07 45.7 18.2 180 30-220 332-534 (571)
386 KOG2444 WD40 repeat protein [G 97.5 0.00011 2.5E-09 50.0 3.6 106 77-184 70-177 (238)
387 PF12234 Rav1p_C: RAVE protein 97.5 0.017 3.6E-07 46.5 15.6 112 68-183 32-155 (631)
388 PHA03098 kelch-like protein; P 97.4 0.034 7.3E-07 44.6 16.6 187 30-226 294-510 (534)
389 PF14870 PSII_BNR: Photosynthe 97.4 0.03 6.5E-07 41.1 22.8 153 65-224 144-301 (302)
390 PF06433 Me-amine-dh_H: Methyl 97.4 0.032 7E-07 41.2 20.4 159 32-193 148-329 (342)
391 PF14583 Pectate_lyase22: Olig 97.3 0.038 8.3E-07 41.6 20.2 139 26-173 42-207 (386)
392 PHA02713 hypothetical protein; 97.3 0.0088 1.9E-07 48.1 12.4 151 30-189 351-538 (557)
393 PF12234 Rav1p_C: RAVE protein 97.3 0.032 7E-07 44.9 14.8 113 21-138 31-155 (631)
394 PF15390 DUF4613: Domain of un 97.3 0.065 1.4E-06 42.4 15.9 122 16-139 53-186 (671)
395 TIGR03074 PQQ_membr_DH membran 97.1 0.12 2.6E-06 43.2 23.2 197 30-226 193-476 (764)
396 PRK10115 protease 2; Provision 97.1 0.12 2.6E-06 42.9 23.0 194 21-225 128-342 (686)
397 KOG1897 Damage-specific DNA bi 97.1 0.13 2.8E-06 43.2 18.6 175 41-223 693-894 (1096)
398 PF00780 CNH: CNH domain; Int 97.1 0.058 1.3E-06 39.2 21.7 195 19-227 35-255 (275)
399 KOG4441 Proteins containing BT 97.1 0.076 1.7E-06 42.9 15.5 180 30-219 284-486 (571)
400 PF15390 DUF4613: Domain of un 97.1 0.085 1.8E-06 41.8 15.0 153 19-184 19-186 (671)
401 COG3204 Uncharacterized protei 97.1 0.058 1.2E-06 38.9 17.3 159 65-225 85-261 (316)
402 PF10647 Gmad1: Lipoprotein Lp 97.1 0.058 1.3E-06 38.7 20.7 153 21-180 25-192 (253)
403 PF14655 RAB3GAP2_N: Rab3 GTPa 97.0 0.029 6.2E-07 43.0 12.1 85 109-193 307-407 (415)
404 PHA03098 kelch-like protein; P 97.0 0.038 8.3E-07 44.3 13.5 150 30-187 342-514 (534)
405 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.0 0.12 2.7E-06 41.4 17.2 156 31-189 120-338 (527)
406 COG5276 Uncharacterized conser 97.0 0.071 1.5E-06 38.5 18.8 134 2-142 111-244 (370)
407 COG5167 VID27 Protein involved 97.0 0.062 1.3E-06 41.8 13.1 144 30-184 478-632 (776)
408 TIGR02604 Piru_Ver_Nterm putat 96.9 0.12 2.5E-06 39.4 15.4 146 20-172 14-202 (367)
409 KOG3630 Nuclear pore complex, 96.9 0.011 2.3E-07 49.9 9.2 118 109-227 100-228 (1405)
410 PF14870 PSII_BNR: Photosynthe 96.7 0.14 3E-06 37.7 21.6 187 21-218 63-253 (302)
411 PF10313 DUF2415: Uncharacteri 96.7 0.013 2.9E-07 28.9 5.4 31 66-96 1-34 (43)
412 PHA02790 Kelch-like protein; P 96.7 0.24 5.1E-06 39.3 18.4 183 30-226 271-469 (480)
413 KOG1897 Damage-specific DNA bi 96.7 0.33 7.2E-06 40.9 18.8 196 18-216 529-733 (1096)
414 PF10647 Gmad1: Lipoprotein Lp 96.6 0.15 3.2E-06 36.7 18.1 149 66-219 24-187 (253)
415 TIGR02604 Piru_Ver_Nterm putat 96.6 0.23 4.9E-06 37.9 15.9 147 66-218 14-204 (367)
416 KOG2377 Uncharacterized conser 96.6 0.087 1.9E-06 40.4 11.1 143 69-216 26-172 (657)
417 KOG4499 Ca2+-binding protein R 96.5 0.15 3.2E-06 35.7 11.1 95 23-119 161-263 (310)
418 TIGR03074 PQQ_membr_DH membran 96.5 0.43 9.4E-06 40.0 17.5 162 31-192 260-485 (764)
419 PF14655 RAB3GAP2_N: Rab3 GTPa 96.4 0.076 1.6E-06 40.8 10.5 83 66-149 308-408 (415)
420 TIGR03118 PEPCTERM_chp_1 conse 96.4 0.23 5E-06 36.2 21.1 204 21-226 24-278 (336)
421 PRK13684 Ycf48-like protein; P 96.4 0.28 6.1E-06 36.9 17.0 156 19-183 172-330 (334)
422 PF14781 BBS2_N: Ciliary BBSom 96.4 0.12 2.7E-06 32.6 13.8 115 70-189 3-130 (136)
423 PF08728 CRT10: CRT10; InterP 96.3 0.13 2.8E-06 42.2 11.6 119 20-138 101-245 (717)
424 KOG3630 Nuclear pore complex, 96.3 0.067 1.4E-06 45.5 10.3 148 20-172 101-262 (1405)
425 PF10313 DUF2415: Uncharacteri 96.3 0.024 5.3E-07 27.9 4.9 31 20-50 1-34 (43)
426 PF07569 Hira: TUP1-like enhan 96.2 0.095 2E-06 36.7 9.5 77 19-98 12-98 (219)
427 PF08728 CRT10: CRT10; InterP 96.2 0.52 1.1E-05 38.9 14.2 149 31-183 49-245 (717)
428 PF07995 GSDH: Glucose / Sorbo 96.2 0.37 8.1E-06 36.2 13.2 106 21-128 3-132 (331)
429 PF14727 PHTB1_N: PTHB1 N-term 96.1 0.45 9.8E-06 36.8 18.5 144 77-225 37-202 (418)
430 PF05096 Glu_cyclase_2: Glutam 96.1 0.33 7.2E-06 34.8 15.1 119 66-192 45-165 (264)
431 COG5276 Uncharacterized conser 96.1 0.36 7.7E-06 35.1 22.0 162 12-187 79-244 (370)
432 PF14761 HPS3_N: Hermansky-Pud 96.1 0.28 6.1E-06 33.9 12.8 105 32-141 29-165 (215)
433 PF07569 Hira: TUP1-like enhan 96.1 0.081 1.8E-06 37.0 8.3 66 161-228 18-96 (219)
434 KOG2377 Uncharacterized conser 96.0 0.2 4.3E-06 38.6 10.6 105 65-173 66-173 (657)
435 PHA02790 Kelch-like protein; P 95.9 0.66 1.4E-05 36.9 14.3 106 30-144 318-428 (480)
436 PRK10115 protease 2; Provision 95.9 0.84 1.8E-05 38.1 17.2 112 67-183 128-254 (686)
437 KOG4499 Ca2+-binding protein R 95.9 0.38 8.2E-06 33.8 17.8 137 65-207 108-263 (310)
438 KOG2280 Vacuolar assembly/sort 95.8 0.61 1.3E-05 38.3 13.0 179 20-206 84-268 (829)
439 TIGR03118 PEPCTERM_chp_1 conse 95.8 0.52 1.1E-05 34.5 18.1 186 20-207 77-307 (336)
440 COG4590 ABC-type uncharacteriz 95.6 0.095 2.1E-06 40.3 7.6 166 18-192 219-394 (733)
441 PF11715 Nup160: Nucleoporin N 95.6 0.16 3.5E-06 41.0 9.6 74 75-148 156-257 (547)
442 PF10168 Nup88: Nuclear pore c 95.5 1.2 2.6E-05 37.2 14.6 77 66-142 85-182 (717)
443 PF13449 Phytase-like: Esteras 95.5 0.77 1.7E-05 34.5 17.0 151 19-170 19-231 (326)
444 KOG2247 WD40 repeat-containing 95.4 0.0016 3.4E-08 49.7 -2.1 142 69-219 38-180 (615)
445 PRK13684 Ycf48-like protein; P 95.4 0.82 1.8E-05 34.4 19.4 153 65-225 172-329 (334)
446 TIGR03548 mutarot_permut cycli 95.3 0.84 1.8E-05 34.2 16.4 67 76-143 123-198 (323)
447 KOG1916 Nuclear protein, conta 95.3 0.017 3.6E-07 47.8 3.0 166 17-189 130-328 (1283)
448 PF07250 Glyoxal_oxid_N: Glyox 95.3 0.61 1.3E-05 33.2 10.3 131 89-221 48-193 (243)
449 PF14761 HPS3_N: Hermansky-Pud 95.3 0.61 1.3E-05 32.3 14.0 100 122-226 29-162 (215)
450 PLN00033 photosystem II stabil 95.2 1.1 2.4E-05 34.6 17.2 148 68-224 241-396 (398)
451 KOG2247 WD40 repeat-containing 95.1 0.0036 7.8E-08 47.9 -1.1 139 22-170 37-176 (615)
452 COG5167 VID27 Protein involved 95.1 0.68 1.5E-05 36.5 10.6 145 75-226 477-631 (776)
453 KOG1916 Nuclear protein, conta 95.1 0.048 1E-06 45.3 4.9 119 20-144 181-328 (1283)
454 KOG1983 Tomosyn and related SN 95.0 1.7 3.7E-05 37.9 13.8 36 18-53 34-69 (993)
455 PF10168 Nup88: Nuclear pore c 94.9 1.9 4.1E-05 36.1 18.1 79 19-98 84-182 (717)
456 PF11715 Nup160: Nucleoporin N 94.9 0.19 4.2E-06 40.5 8.0 76 29-104 156-257 (547)
457 PF14781 BBS2_N: Ciliary BBSom 94.9 0.57 1.2E-05 29.7 12.5 114 24-142 3-128 (136)
458 KOG1898 Splicing factor 3b, su 94.9 2.3 5E-05 36.6 17.3 177 42-225 854-1046(1205)
459 PF10214 Rrn6: RNA polymerase 94.8 2.2 4.8E-05 36.2 21.4 163 17-185 77-277 (765)
460 TIGR02276 beta_rpt_yvtn 40-res 94.8 0.21 4.6E-06 24.3 6.1 32 163-194 1-32 (42)
461 PLN00033 photosystem II stabil 94.4 1.9 4E-05 33.4 17.6 149 22-181 241-396 (398)
462 TIGR03606 non_repeat_PQQ dehyd 94.3 2 4.4E-05 33.8 18.5 109 66-174 30-166 (454)
463 PF10214 Rrn6: RNA polymerase 94.3 3 6.5E-05 35.5 17.4 119 19-140 145-277 (765)
464 PF07995 GSDH: Glucose / Sorbo 94.1 1.9 4E-05 32.5 13.4 106 67-174 3-134 (331)
465 TIGR03032 conserved hypothetic 94.1 1.7 3.8E-05 32.1 11.9 88 71-164 208-315 (335)
466 KOG3616 Selective LIM binding 94.1 3 6.5E-05 34.8 12.9 69 18-93 13-81 (1636)
467 PF12657 TFIIIC_delta: Transcr 94.1 0.88 1.9E-05 30.6 8.5 30 197-226 85-120 (173)
468 TIGR03606 non_repeat_PQQ dehyd 93.8 2.6 5.7E-05 33.2 15.7 61 17-77 27-90 (454)
469 COG3823 Glutamine cyclotransfe 93.8 1.5 3.3E-05 30.3 14.5 191 12-215 36-247 (262)
470 KOG4460 Nuclear pore complex, 93.6 3 6.6E-05 33.2 11.6 78 67-144 105-203 (741)
471 TIGR02276 beta_rpt_yvtn 40-res 93.5 0.43 9.3E-06 23.1 5.7 32 75-106 1-33 (42)
472 PLN02193 nitrile-specifier pro 93.2 3.5 7.6E-05 32.8 13.7 112 30-144 228-356 (470)
473 PF10395 Utp8: Utp8 family; I 93.2 4.2 9.1E-05 33.6 15.8 169 18-192 128-313 (670)
474 PLN02193 nitrile-specifier pro 92.9 3.9 8.5E-05 32.5 17.1 140 76-218 228-387 (470)
475 PLN02153 epithiospecifier prot 92.8 3.2 7E-05 31.3 17.6 112 30-144 32-172 (341)
476 COG5290 IkappaB kinase complex 92.8 5.3 0.00012 33.7 12.4 92 113-208 250-347 (1243)
477 PF07676 PD40: WD40-like Beta 92.7 0.58 1.2E-05 22.4 5.2 32 15-46 4-38 (39)
478 KOG3616 Selective LIM binding 92.5 0.33 7.1E-06 40.0 5.1 68 65-137 14-81 (1636)
479 PF12768 Rax2: Cortical protei 92.1 3.6 7.8E-05 30.2 11.2 56 86-143 15-76 (281)
480 PF13449 Phytase-like: Esteras 92.0 4.1 8.9E-05 30.7 18.3 161 65-226 19-248 (326)
481 KOG2280 Vacuolar assembly/sort 91.9 6.6 0.00014 32.8 16.2 173 41-225 64-244 (829)
482 PLN02153 epithiospecifier prot 91.9 4.4 9.6E-05 30.6 17.3 69 30-99 85-171 (341)
483 KOG1900 Nuclear pore complex, 91.5 9.8 0.00021 33.9 13.1 138 84-227 96-272 (1311)
484 KOG1898 Splicing factor 3b, su 91.4 9.1 0.0002 33.4 12.4 195 18-220 581-796 (1205)
485 PF14727 PHTB1_N: PTHB1 N-term 91.3 5.8 0.00013 31.0 20.4 59 31-94 145-203 (418)
486 PF12657 TFIIIC_delta: Transcr 91.1 3.3 7.3E-05 27.8 8.6 31 110-140 86-122 (173)
487 KOG1896 mRNA cleavage and poly 90.9 11 0.00024 33.4 17.5 174 42-225 1005-1211(1366)
488 PF03022 MRJP: Major royal jel 90.3 5.9 0.00013 29.2 19.7 172 41-216 34-254 (287)
489 PF10395 Utp8: Utp8 family; I 90.0 10 0.00022 31.5 21.8 156 65-227 129-305 (670)
490 smart00564 PQQ beta-propeller 89.4 1.2 2.6E-05 20.1 3.9 25 122-146 7-31 (33)
491 PF01011 PQQ: PQQ enzyme repea 89.3 1.5 3.2E-05 20.9 4.3 28 33-60 2-29 (38)
492 PF02333 Phytase: Phytase; In 89.2 8.6 0.00019 29.6 21.1 190 30-226 67-289 (381)
493 KOG0379 Kelch repeat-containin 89.1 10 0.00022 30.4 10.6 112 31-144 123-254 (482)
494 PF14779 BBS1: Ciliary BBSome 89.1 6.8 0.00015 28.3 8.7 72 65-136 176-255 (257)
495 COG4257 Vgb Streptogramin lyas 88.3 8.2 0.00018 28.2 16.0 197 20-225 62-260 (353)
496 PF02333 Phytase: Phytase; In 88.1 10 0.00023 29.2 17.6 141 41-185 127-291 (381)
497 KOG3522 Predicted guanine nucl 87.8 2.9 6.2E-05 35.2 6.7 140 33-185 549-698 (925)
498 PF08801 Nucleoporin_N: Nup133 87.4 12 0.00027 29.3 15.0 30 198-227 190-219 (422)
499 COG1520 FOG: WD40-like repeat 87.3 11 0.00025 28.8 18.6 112 32-148 69-180 (370)
500 COG4257 Vgb Streptogramin lyas 87.3 9.6 0.00021 27.9 19.0 161 19-186 103-264 (353)
No 1
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.6e-43 Score=262.50 Aligned_cols=208 Identities=25% Similarity=0.447 Sum_probs=194.4
Q ss_pred ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370 10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI 89 (228)
Q Consensus 10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 89 (228)
....++.+|.++|..+.|+|+.++|+++++|+++++|.+.+..+....+. | ..+|.++.|+|.|-+|||++.|++-
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~G---H-~~PVwdV~F~P~GyYFatas~D~tA 517 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKG---H-LAPVWDVQFAPRGYYFATASHDQTA 517 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecC---C-CcceeeEEecCCceEEEecCCCcee
Confidence 34455789999999999999999999999999999999999988877763 3 8899999999999999999999999
Q ss_pred EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEE
Q 040370 90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVL 169 (228)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (228)
++|......+.+.+.+| -..|.|+.|+|+..|+++|+.|.++++||+.+|..++.|.+ |...+.+++|+|+|++++
T Consensus 518 rLWs~d~~~PlRifagh--lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G--H~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 518 RLWSTDHNKPLRIFAGH--LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG--HKGPVTALAFSPCGRYLA 593 (707)
T ss_pred eeeecccCCchhhhccc--ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC--CCCceEEEEEcCCCceEe
Confidence 99999999999999887 77899999999999999999999999999999999999988 889999999999999999
Q ss_pred EeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 170 SIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 170 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+++. |+.|.+||+.+++.+..+ .+|.+.|.++.|+.+|..||+||.|..|++||+.
T Consensus 594 Sg~e-d~~I~iWDl~~~~~v~~l-~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 594 SGDE-DGLIKIWDLANGSLVKQL-KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred eccc-CCcEEEEEcCCCcchhhh-hcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 8666 899999999999999988 7899999999999999999999999999999974
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-43 Score=250.40 Aligned_cols=214 Identities=22% Similarity=0.382 Sum_probs=192.4
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
+|+++.. .++..+.+|...|..++|+|+|++|++++.|.+-++||++++..... .++| ...|.+++|+|+|.++
T Consensus 245 lw~~~~e--~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~---QEGH-s~~v~~iaf~~DGSL~ 318 (459)
T KOG0272|consen 245 LWKLSQE--TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL---QEGH-SKGVFSIAFQPDGSLA 318 (459)
T ss_pred eeccCCC--cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh---hccc-ccccceeEecCCCcee
Confidence 4666633 45666778999999999999999999999999999999999765432 2344 8999999999999999
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV 160 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
+||+.|..-+|||+++++++..+.+| ..+|.+++|+|+|..|+||+.|++++|||++..+.+.++.. |...+..+.
T Consensus 319 ~tGGlD~~~RvWDlRtgr~im~L~gH--~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA--H~nlVS~Vk 394 (459)
T KOG0272|consen 319 ATGGLDSLGRVWDLRTGRCIMFLAGH--IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPA--HSNLVSQVK 394 (459)
T ss_pred eccCccchhheeecccCcEEEEeccc--ccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccc--ccchhhheE
Confidence 99999999999999999999999886 88999999999999999999999999999999888887766 888999999
Q ss_pred ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
|.|...+++++++.|+++++|..++..++..+ .+|.+.|.++..+|++++++|++.|.++++|.
T Consensus 395 ~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL-aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 395 YSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL-AGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ecccCCeEEEEcccCcceeeecCCCcccchhh-cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99966666666677999999999999999998 89999999999999999999999999999996
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-42 Score=240.84 Aligned_cols=216 Identities=22% Similarity=0.433 Sum_probs=186.2
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-----
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS----- 75 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----- 75 (228)
+||+... .+.+...+|...|.|++|+|||+.||+|+.||+|++||.++++++.. ...+| ...|++++|.|
T Consensus 141 ~WD~~Te--Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH-~K~It~Lawep~hl~p 215 (480)
T KOG0271|consen 141 LWDLDTE--TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGH-KKWITALAWEPLHLVP 215 (480)
T ss_pred eeccCCC--CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCc-ccceeEEeecccccCC
Confidence 5888854 45667779999999999999999999999999999999999986543 33344 88999999976
Q ss_pred CCCeEEEEecCCeEEEEeCCCCceeeEEeccc------------------------------------------------
Q 040370 76 TGGMYVTASKDGAIRLWDGVSANCVRSIVGAH------------------------------------------------ 107 (228)
Q Consensus 76 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------------------------------------------------ 107 (228)
..++|++++.||.++|||+..+.++..+.+|.
T Consensus 216 ~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~la 295 (480)
T KOG0271|consen 216 PCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLA 295 (480)
T ss_pred CccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeee
Confidence 46689999999999999966555444443221
Q ss_pred ----------------------------------------------------------------------ccceeEEEEE
Q 040370 108 ----------------------------------------------------------------------GTAEATSANF 117 (228)
Q Consensus 108 ----------------------------------------------------------------------~~~~i~~~~~ 117 (228)
|...|+.+.|
T Consensus 296 lsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~f 375 (480)
T KOG0271|consen 296 LSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSF 375 (480)
T ss_pred ccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEE
Confidence 3567899999
Q ss_pred CCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCC
Q 040370 118 TKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHI 197 (228)
Q Consensus 118 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 197 (228)
+||++++++++.|+.|++||.++|+.+..+.+ |-..++.++|+.+.+.++++ +.|.++++||+++.+....+ .+|.
T Consensus 376 SPd~r~IASaSFDkSVkLW~g~tGk~lasfRG--Hv~~VYqvawsaDsRLlVS~-SkDsTLKvw~V~tkKl~~DL-pGh~ 451 (480)
T KOG0271|consen 376 SPDGRYIASASFDKSVKLWDGRTGKFLASFRG--HVAAVYQVAWSADSRLLVSG-SKDSTLKVWDVRTKKLKQDL-PGHA 451 (480)
T ss_pred CCCccEEEEeecccceeeeeCCCcchhhhhhh--ccceeEEEEeccCccEEEEc-CCCceEEEEEeeeeeecccC-CCCC
Confidence 99999999999999999999999999999998 78899999999999888774 55899999999999988888 7999
Q ss_pred CCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 198 GAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 198 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
..|.++.|+|||..+++|+.|..+++|.
T Consensus 452 DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 452 DEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999999995
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.3e-43 Score=246.45 Aligned_cols=209 Identities=19% Similarity=0.284 Sum_probs=190.6
Q ss_pred ccceeEEEeecCcceEEEEEeCC--CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec
Q 040370 8 TAKRAFRVIQDTHNVRSVSFHPS--GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK 85 (228)
Q Consensus 8 ~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 85 (228)
+......+.+|...|.++.|+|. +..+|+|+.||++++|++.+...+..+. +| ...|..++|+|+|++|+|++.
T Consensus 206 ~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~---gH-~~RVs~VafHPsG~~L~Tasf 281 (459)
T KOG0272|consen 206 QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLE---GH-LARVSRVAFHPSGKFLGTASF 281 (459)
T ss_pred CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhh---cc-hhhheeeeecCCCceeeeccc
Confidence 44677788899999999999995 6789999999999999999876655443 34 789999999999999999999
Q ss_pred CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCC
Q 040370 86 DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE 165 (228)
Q Consensus 86 dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (228)
|.+-++||++++..+....+| ...|.+++|.|||..+++|+.|..-+|||+++++++..+.+ |...+..+.|+|+|
T Consensus 282 D~tWRlWD~~tk~ElL~QEGH--s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g--H~k~I~~V~fsPNG 357 (459)
T KOG0272|consen 282 DSTWRLWDLETKSELLLQEGH--SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG--HIKEILSVAFSPNG 357 (459)
T ss_pred ccchhhcccccchhhHhhccc--ccccceeEecCCCceeeccCccchhheeecccCcEEEEecc--cccceeeEeECCCc
Confidence 999999999999988877776 78999999999999999999999999999999999999988 88899999999999
Q ss_pred cEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeee
Q 040370 166 EFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 166 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~ 226 (228)
..++++++ |++++|||++....+..+ .+|.+-|+.+.|+| .|.+|+|+|.|++++||..
T Consensus 358 y~lATgs~-Dnt~kVWDLR~r~~ly~i-pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 358 YHLATGSS-DNTCKVWDLRMRSELYTI-PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred eEEeecCC-CCcEEEeeecccccceec-ccccchhhheEecccCCeEEEEcccCcceeeecC
Confidence 88888666 899999999999888887 79999999999999 7899999999999999974
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.5e-41 Score=234.93 Aligned_cols=206 Identities=23% Similarity=0.413 Sum_probs=172.4
Q ss_pred EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEe
Q 040370 14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD 93 (228)
Q Consensus 14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd 93 (228)
.+.+|.++|.|++|+|+|..|++|+.|.++++||+.+..+....+. | ...|.|++|+|||+.|++|+.||+|++||
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~Kg---H-~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKG---H-KNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecC---C-ccEEEEEEECCCcchhhccccCCeEEEec
Confidence 3458999999999999999999999999999999999887666653 3 88999999999999999999999999999
Q ss_pred CCCCceee-EEecccccceeEEEEECC-----CCCEEEEeeCCCeEEEEEccCCeeEEEEecc-----------------
Q 040370 94 GVSANCVR-SIVGAHGTAEATSANFTK-----DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA----------------- 150 (228)
Q Consensus 94 ~~~~~~~~-~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~----------------- 150 (228)
..+++++. .+.+| ...|++++|.| ..++|++++.||.++|||+..++++..+.+|
T Consensus 186 pktg~~~g~~l~gH--~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliyS 263 (480)
T KOG0271|consen 186 PKTGQQIGRALRGH--KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYS 263 (480)
T ss_pred CCCCCcccccccCc--ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEe
Confidence 99987764 44444 78999999976 4457777777777777777554433222111
Q ss_pred --------------------------------------------------------------------------------
Q 040370 151 -------------------------------------------------------------------------------- 150 (228)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (228)
T Consensus 264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence
Q ss_pred ---------------------eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCC
Q 040370 151 ---------------------THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAE 209 (228)
Q Consensus 151 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (228)
.|...+..+.|+|+++++++++. |..|++||.++|+.+..+ .+|-.+|+.++|+.|.
T Consensus 344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF-DkSVkLW~g~tGk~lasf-RGHv~~VYqvawsaDs 421 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF-DKSVKLWDGRTGKFLASF-RGHVAAVYQVAWSADS 421 (480)
T ss_pred CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeec-ccceeeeeCCCcchhhhh-hhccceeEEEEeccCc
Confidence 12233457889999999998766 899999999999999999 8999999999999999
Q ss_pred cEEEEecCCCCEEEeeec
Q 040370 210 AAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 210 ~~l~s~~~dg~i~vwd~~ 227 (228)
++|++|+.|.++++||+.
T Consensus 422 RLlVS~SkDsTLKvw~V~ 439 (480)
T KOG0271|consen 422 RLLVSGSKDSTLKVWDVR 439 (480)
T ss_pred cEEEEcCCCceEEEEEee
Confidence 999999999999999975
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-40 Score=220.58 Aligned_cols=215 Identities=18% Similarity=0.312 Sum_probs=183.6
Q ss_pred CcCCccc---cceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC
Q 040370 2 FDFSKAT---AKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG 78 (228)
Q Consensus 2 wd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 78 (228)
|++.... .....++.+|+..|..+..+++|++.++++.|+++++||+.+++....+. +| ...|.+++|+|+.+
T Consensus 43 W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~---GH-~~dVlsva~s~dn~ 118 (315)
T KOG0279|consen 43 WKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFV---GH-TKDVLSVAFSTDNR 118 (315)
T ss_pred EEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEE---ec-CCceEEEEecCCCc
Confidence 5555433 34577888999999999999999999999999999999999997665554 34 88999999999999
Q ss_pred eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCC--CCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeee
Q 040370 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD--QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLR 156 (228)
Q Consensus 79 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 156 (228)
.+++|+.|.+|++|++.. .+..++....+...|.|+.|+|+ ..+|++++.|++|++||+++.+....+.+ |...+
T Consensus 119 qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g--h~~~v 195 (315)
T KOG0279|consen 119 QIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIG--HSGYV 195 (315)
T ss_pred eeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccc--ccccE
Confidence 999999999999999864 44445544433789999999997 78999999999999999999988888877 77889
Q ss_pred eEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 157 FQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
..+.++|+|..++++| .||.+.+||++.++.+..+ +|...|.+++|+|+...|+.+ .+..|+|||+.
T Consensus 196 ~t~~vSpDGslcasGg-kdg~~~LwdL~~~k~lysl--~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~ 262 (315)
T KOG0279|consen 196 NTVTVSPDGSLCASGG-KDGEAMLWDLNEGKNLYSL--EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLE 262 (315)
T ss_pred EEEEECCCCCEEecCC-CCceEEEEEccCCceeEec--cCCCeEeeEEecCCceeEeec-cCCceEEEecc
Confidence 9999999999988855 5899999999999998776 789999999999988766655 45569999974
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.7e-39 Score=213.17 Aligned_cols=218 Identities=15% Similarity=0.341 Sum_probs=188.9
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
+||+++....+...+.+|+..|+++.|..+|+.+++|++||+++|||++...+...++. .++|+++..+|+...|
T Consensus 65 lyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~-----~spVn~vvlhpnQteL 139 (311)
T KOG0315|consen 65 LYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH-----NSPVNTVVLHPNQTEL 139 (311)
T ss_pred EEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC-----CCCcceEEecCCcceE
Confidence 58999888888999999999999999999999999999999999999998555444332 7899999999999999
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe------eEEEEecceeee
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR------LVKQYLGATHTQ 154 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~------~~~~~~~~~~~~ 154 (228)
++|..+|.|++||+.+......+.... ...|.++...|||.+++.+...|+.++|++-+.+ ++.+++. |..
T Consensus 140 is~dqsg~irvWDl~~~~c~~~liPe~-~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a--h~~ 216 (311)
T KOG0315|consen 140 ISGDQSGNIRVWDLGENSCTHELIPED-DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA--HNG 216 (311)
T ss_pred EeecCCCcEEEEEccCCccccccCCCC-CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec--ccc
Confidence 999999999999999887666654433 6789999999999999999999999999987643 3334443 788
Q ss_pred eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.+..+.++|++++++++++ |.+++||+..+.-.......+|...+..++||.|+.||+||+.|+.+++|++.
T Consensus 217 ~il~C~lSPd~k~lat~ss-dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSS-DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred eEEEEEECCCCcEEEeecC-CceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence 8999999999999999877 79999999988834444447999999999999999999999999999999975
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-38 Score=214.05 Aligned_cols=215 Identities=18% Similarity=0.305 Sum_probs=181.6
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC--CC
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST--GG 78 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~ 78 (228)
+||+... +...++.+|...|.+++|+||...+++|+.|.+|++|+............ .+.+-|+|+.|+|+ ..
T Consensus 89 lWDl~~g--~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~---~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 89 LWDLATG--ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED---SHREWVSCVRFSPNESNP 163 (315)
T ss_pred EEEecCC--cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecC---CCcCcEEEEEEcCCCCCc
Confidence 5888855 56677789999999999999999999999999999999876543332221 11678999999997 67
Q ss_pred eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeE
Q 040370 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQ 158 (228)
Q Consensus 79 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 158 (228)
+|++++.|++|++||+++.+....+.+| ...++.++++|||..+++|+.||.+.+||++.++.+..+. +...+.+
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh--~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~---a~~~v~s 238 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGH--SGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE---AFDIVNS 238 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccc--cccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc---CCCeEee
Confidence 9999999999999999999999888886 7799999999999999999999999999999999988776 6778999
Q ss_pred EEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCC--------CCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 159 AVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNH--------IGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
++|+|+...+.++.. ..|+|||+.++..+..+.... .-...+++|+++|..|++|-.|+.|++|.+.
T Consensus 239 l~fspnrywL~~at~--~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 239 LCFSPNRYWLCAATA--TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEecCCceeEeeccC--CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 999998777666443 679999999988777663211 2234568999999999999999999999874
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.7e-39 Score=216.22 Aligned_cols=207 Identities=19% Similarity=0.322 Sum_probs=190.1
Q ss_pred ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCeEEEEecCCe
Q 040370 10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGMYVTASKDGA 88 (228)
Q Consensus 10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~ 88 (228)
+...++.+|++.+.|+.|-+ ...|++++.|.+..+||+++++....+. +| .+.|.++.++| +++.+++|+.|+.
T Consensus 136 ~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~---GH-~gDV~slsl~p~~~ntFvSg~cD~~ 210 (343)
T KOG0286|consen 136 RVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFH---GH-TGDVMSLSLSPSDGNTFVSGGCDKS 210 (343)
T ss_pred eeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEec---CC-cccEEEEecCCCCCCeEEecccccc
Confidence 34455779999999999987 5578899999999999999999877765 33 88999999999 9999999999999
Q ss_pred EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEE
Q 040370 89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFV 168 (228)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (228)
.++||++.+...+.|.+| ...|+++.|.|+|.-+++|+.|++.++||+|..+.+..+........+.++.|+..|+++
T Consensus 211 aklWD~R~~~c~qtF~gh--esDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlL 288 (343)
T KOG0286|consen 211 AKLWDVRSGQCVQTFEGH--ESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLL 288 (343)
T ss_pred eeeeeccCcceeEeeccc--ccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEE
Confidence 999999999999999987 789999999999999999999999999999999999999876677789999999999999
Q ss_pred EEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 169 LSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 169 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
+++.. |.++.+||.-.++....+ .+|.+.|+++..+|||..++||+.|..++||.
T Consensus 289 fagy~-d~~c~vWDtlk~e~vg~L-~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 289 FAGYD-DFTCNVWDTLKGERVGVL-AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred Eeeec-CCceeEeeccccceEEEe-eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99654 899999999999988888 79999999999999999999999999999994
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.4e-37 Score=210.43 Aligned_cols=208 Identities=15% Similarity=0.272 Sum_probs=182.2
Q ss_pred ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370 10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI 89 (228)
Q Consensus 10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 89 (228)
+....+.+|...|.++.|++|.+++++++.||.+.|||.-+......++.+ ...|..++|+|.|+++++|+-|+..
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~----s~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP----SSWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC----ceeEEEEEECCCCCeEEecCcCcee
Confidence 334556699999999999999999999999999999999887776666665 6789999999999999999999999
Q ss_pred EEEeCCCC------ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECC
Q 040370 90 RLWDGVSA------NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFND 163 (228)
Q Consensus 90 ~iwd~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (228)
.||++.+. +..+.+.+| .+.+.++.|-+| ..|+|++.|.+..+||+++++.+..+.+ |..-+.++.++|
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gH--tgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~G--H~gDV~slsl~p 196 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGH--TGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHG--HTGDVMSLSLSP 196 (343)
T ss_pred EEEecccccccccceeeeeecCc--cceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecC--CcccEEEEecCC
Confidence 99999855 234455555 889999999985 5689999999999999999999999987 788899999999
Q ss_pred CCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 164 TEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 164 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.....+++|+-|+..++||+|.+.....+ .+|.+.|+++.|.|+|.-+++|+.|++.++||++
T Consensus 197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF-~ghesDINsv~ffP~G~afatGSDD~tcRlyDlR 259 (343)
T KOG0286|consen 197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTF-EGHESDINSVRFFPSGDAFATGSDDATCRLYDLR 259 (343)
T ss_pred CCCCeEEecccccceeeeeccCcceeEee-cccccccceEEEccCCCeeeecCCCceeEEEeec
Confidence 44444444555899999999999999999 7999999999999999999999999999999986
No 11
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.5e-37 Score=232.94 Aligned_cols=210 Identities=16% Similarity=0.320 Sum_probs=185.4
Q ss_pred eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEE--------e--------------------eecccee
Q 040370 11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCY--------L--------------------SANVPEI 62 (228)
Q Consensus 11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~--------~--------------------~~~~~~~ 62 (228)
..+++......++|..|++++..||.|..|..|++|.+...+.. . ..... .
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L-~ 448 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTL-Y 448 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEe-e
Confidence 34455556678999999999999999999999999998742210 0 00112 2
Q ss_pred eeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe
Q 040370 63 SVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR 142 (228)
Q Consensus 63 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 142 (228)
.|.++|..+.|+|+.++|++||+|+++++|.+++...+....+| ..+|..+.|+|.|-|+||++.|++.++|......
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH--~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~ 526 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGH--LAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK 526 (707)
T ss_pred cCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCC--CcceeeEEecCCceEEEecCCCceeeeeecccCC
Confidence 34999999999999999999999999999999999999999876 7899999999999999999999999999999989
Q ss_pred eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEE
Q 040370 143 LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVR 222 (228)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 222 (228)
+++.+.+ |-.-+-++.|+|+..|++++++ |.++++||+.+|..+..+ .+|.++|.+++|+|+|++|++|+.||.|+
T Consensus 527 PlRifag--hlsDV~cv~FHPNs~Y~aTGSs-D~tVRlWDv~~G~~VRiF-~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~ 602 (707)
T KOG0263|consen 527 PLRIFAG--HLSDVDCVSFHPNSNYVATGSS-DRTVRLWDVSTGNSVRIF-TGHKGPVTALAFSPCGRYLASGDEDGLIK 602 (707)
T ss_pred chhhhcc--cccccceEEECCcccccccCCC-CceEEEEEcCCCcEEEEe-cCCCCceEEEEEcCCCceEeecccCCcEE
Confidence 9998887 7778889999999999999754 899999999999999988 89999999999999999999999999999
Q ss_pred Eeeec
Q 040370 223 FWKEI 227 (228)
Q Consensus 223 vwd~~ 227 (228)
+||+.
T Consensus 603 iWDl~ 607 (707)
T KOG0263|consen 603 IWDLA 607 (707)
T ss_pred EEEcC
Confidence 99974
No 12
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.4e-38 Score=223.85 Aligned_cols=201 Identities=20% Similarity=0.381 Sum_probs=185.0
Q ss_pred cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA 97 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 97 (228)
|...|++++|+|+...|+++++||+|+|||....+....+. +| .-.|.+++|+|...++++|+.|..|++||.+++
T Consensus 179 h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~---GH-gwdVksvdWHP~kgLiasgskDnlVKlWDprSg 254 (464)
T KOG0284|consen 179 HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR---GH-GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG 254 (464)
T ss_pred hhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec---cC-CCCcceeccCCccceeEEccCCceeEeecCCCc
Confidence 45899999999999999999999999999998776554443 34 788999999999999999999999999999999
Q ss_pred ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCe
Q 040370 98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNE 177 (228)
Q Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 177 (228)
+++.++..| +..|..+.|+|++++|++++.|..++++|+++.+.+..+++ |...+.++.|+|-...++++++.||.
T Consensus 255 ~cl~tlh~H--KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~--Hkkdv~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 255 SCLATLHGH--KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG--HKKDVTSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred chhhhhhhc--cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc--chhhheeeccccccccceeeccCCCc
Confidence 999988766 78999999999999999999999999999999999998887 77889999999999999999999999
Q ss_pred EEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 178 IVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 178 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
|..|.+...+++..+..+|...|.+++|+|-|.+|++|+.|.++++|..
T Consensus 331 vvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 331 VVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred eEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 9999998888888888899999999999999999999999999999964
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.6e-38 Score=223.57 Aligned_cols=201 Identities=21% Similarity=0.393 Sum_probs=180.8
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS 96 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 96 (228)
.|..+|+++.|++++.++++|+.+|.|++|+..-.. ......||...|++++|+|....|++|+.||+|+|||...
T Consensus 136 aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn----Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~ 211 (464)
T KOG0284|consen 136 AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN----VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM 211 (464)
T ss_pred hhcccceeEEEccCCCEEEEcCCCceEEecccchhh----hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC
Confidence 699999999999999999999999999999976533 2233345478999999999999999999999999999999
Q ss_pred CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370 97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN 176 (228)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 176 (228)
.+....+.+| .-.|.+++|+|...++++++.|..|++||.++++++.++.. |...+..+.|+++++++++.+ .|.
T Consensus 212 ~kee~vL~GH--gwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~--HKntVl~~~f~~n~N~Llt~s-kD~ 286 (464)
T KOG0284|consen 212 PKEERVLRGH--GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHG--HKNTVLAVKFNPNGNWLLTGS-KDQ 286 (464)
T ss_pred CchhheeccC--CCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhh--ccceEEEEEEcCCCCeeEEcc-CCc
Confidence 9888888776 78899999999999999999999999999999999998866 888999999999998888755 489
Q ss_pred eEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeeec
Q 040370 177 EIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 177 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~ 227 (228)
.++++|+++.+.+..+ .+|...|+++.|+| ...+|.+|+.||.|..|.+.
T Consensus 287 ~~kv~DiR~mkEl~~~-r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 287 SCKVFDIRTMKELFTY-RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred eEEEEehhHhHHHHHh-hcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 9999999988888888 79999999999999 67789999999999999864
No 14
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.9e-35 Score=196.63 Aligned_cols=210 Identities=19% Similarity=0.384 Sum_probs=176.2
Q ss_pred eeEEEeecCcceEEEEEeCC-CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370 11 RAFRVIQDTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI 89 (228)
Q Consensus 11 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 89 (228)
....+.+|.+.+..++|+|- |..||+++.|..|++|+...+............|+..|++++|+|.|++|+++|.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 45566789999999999997 88999999999999999986443333323333448999999999999999999999999
Q ss_pred EEEeCCCC--ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC---eeEEEEecceeeeeeeEEEECCC
Q 040370 90 RLWDGVSA--NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG---RLVKQYLGATHTQLRFQAVFNDT 164 (228)
Q Consensus 90 ~iwd~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 164 (228)
.||.-..+ +++..+.+| ..+|.+++|+++|++||+++.|+.|.+|.+..+ ++...++. |.+-+..+.|+|.
T Consensus 86 ~Iw~k~~~efecv~~lEGH--EnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~--HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGH--ENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE--HTQDVKHVIWHPT 161 (312)
T ss_pred EEeecCCCceeEEeeeecc--ccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc--ccccccEEEEcCC
Confidence 99986644 567777777 789999999999999999999999999999754 34555555 7778889999999
Q ss_pred CcEEEEeeCCCCeEEEEEcCCc---ceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 165 EEFVLSIDEPSNEIVIWDALTA---EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 165 ~~~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
...+++++. |++|++|+-..+ .+..++ .+|.+.|.+++|+|.|..|++++.|++++||..
T Consensus 162 ~dlL~S~SY-DnTIk~~~~~~dddW~c~~tl-~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 162 EDLLFSCSY-DNTIKVYRDEDDDDWECVQTL-DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred cceeEEecc-CCeEEEEeecCCCCeeEEEEe-cCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence 998888666 899999986632 345566 789999999999999999999999999999984
No 15
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.5e-36 Score=226.90 Aligned_cols=208 Identities=23% Similarity=0.452 Sum_probs=179.1
Q ss_pred eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEc-ccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEE
Q 040370 12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDV-NTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIR 90 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 90 (228)
...+.+|...|.+++|+|+++++++++.|++|+|||+ ..+.....+. +| ...|++++|+|+++.+++|+.|++|+
T Consensus 196 ~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~---gH-~~~v~~~~f~p~g~~i~Sgs~D~tvr 271 (456)
T KOG0266|consen 196 LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK---GH-STYVTSVAFSPDGNLLVSGSDDGTVR 271 (456)
T ss_pred hccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec---CC-CCceEEEEecCCCCEEEEecCCCcEE
Confidence 3344689999999999999999999999999999999 4446655554 34 88999999999999999999999999
Q ss_pred EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe--eEEEEecceeeeeeeEEEECCCCcEE
Q 040370 91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR--LVKQYLGATHTQLRFQAVFNDTEEFV 168 (228)
Q Consensus 91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (228)
+||++++++...+..| ...|++++|++++++|++++.|+.|++||+.++. +...+........+..+.|+|++.++
T Consensus 272 iWd~~~~~~~~~l~~h--s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~l 349 (456)
T KOG0266|consen 272 IWDVRTGECVRKLKGH--SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYL 349 (456)
T ss_pred EEeccCCeEEEeeecc--CCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEE
Confidence 9999999999999987 7799999999999999999999999999999988 45566554333268999999999999
Q ss_pred EEeeCCCCeEEEEEcCCcceeEEeecCCCCCc---EEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 169 LSIDEPSNEIVIWDALTAEKVAKWSSNHIGAP---RWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 169 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+++.. |+.+++||++.+.....+ .+|...+ .+...++.+.++++|+.|+.|.+|++.
T Consensus 350 l~~~~-d~~~~~w~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 350 LSASL-DRTLKLWDLRSGKSVGTY-TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred EEecC-CCeEEEEEccCCcceeee-cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCC
Confidence 99766 799999999999998888 5666643 334557789999999999999999974
No 16
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=6.9e-35 Score=221.59 Aligned_cols=210 Identities=11% Similarity=0.200 Sum_probs=168.3
Q ss_pred EEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEe----eeccceeeeccceeeEEeCCCC-CeEEEEecCC
Q 040370 14 RVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYL----SANVPEISVNGAINQVRYSSTG-GMYVTASKDG 87 (228)
Q Consensus 14 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg 87 (228)
.+.+|.+.|.+++|+| ++++|++|+.|++|++||+.++.... ......+| ...|.+++|+|++ ++|++|+.|+
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH-~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH-TKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCC-CCcEEEEEeCcCCCCEEEEEeCCC
Confidence 3568999999999999 88999999999999999997653211 11122233 7899999999975 6999999999
Q ss_pred eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370 88 AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF 167 (228)
Q Consensus 88 ~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (228)
.|++||+++++....+..| ...|.+++|+|++.+|++++.|+.|++||+++++.+..+..+.. .....+.|.+++..
T Consensus 149 tVrIWDl~tg~~~~~l~~h--~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~-~~~~~~~w~~~~~~ 225 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCH--SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS-AKSQRCLWAKRKDL 225 (493)
T ss_pred EEEEEECCCCeEEEEEcCC--CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCC-CcceEEEEcCCCCe
Confidence 9999999999888887765 67899999999999999999999999999999998888776432 22345678888888
Q ss_pred EEEee---CCCCeEEEEEcCCcceeEEeec-CCCCCcEEEEeCCCCcEEEEec-CCCCEEEeeec
Q 040370 168 VLSID---EPSNEIVIWDALTAEKVAKWSS-NHIGAPRWIEHSPAEAAFITCG-TDRSVRFWKEI 227 (228)
Q Consensus 168 ~~~~~---~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~ 227 (228)
+++++ +.|+.|++||+++......... .+...+....|++++++|++++ .|+.|++||+.
T Consensus 226 ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 226 IITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM 290 (493)
T ss_pred EEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence 88765 3479999999987654443322 3334566678999999999888 59999999974
No 17
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3e-35 Score=223.91 Aligned_cols=202 Identities=21% Similarity=0.417 Sum_probs=176.9
Q ss_pred cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC-CC
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG-VS 96 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~-~~ 96 (228)
+...|.++.|+|+|+.+++++.++.+++|+....+. .......+| ...|.+++|+|+++++++++.|++|++||+ ..
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h-~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~ 235 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGH-TRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD 235 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhcccccc-ccceeeeEECCCCcEEEEecCCceEEEeeccCC
Confidence 378999999999999999999999999999976662 122222334 889999999999999999999999999999 55
Q ss_pred CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370 97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN 176 (228)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 176 (228)
+..++.+.+| ...|++++|+|+++++++|+.|++|++||++++++...+.+ |...+..++|++++.++++++. |+
T Consensus 236 ~~~~~~l~gH--~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~--hs~~is~~~f~~d~~~l~s~s~-d~ 310 (456)
T KOG0266|consen 236 GRNLKTLKGH--STYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG--HSDGISGLAFSPDGNLLVSASY-DG 310 (456)
T ss_pred CeEEEEecCC--CCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeec--cCCceEEEEECCCCCEEEEcCC-Cc
Confidence 5888888876 78899999999999999999999999999999999999988 7778999999999999999855 89
Q ss_pred eEEEEEcCCcce--eEEeecCCCC--CcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 177 EIVIWDALTAEK--VAKWSSNHIG--APRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 177 ~i~i~d~~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.|++||+.++.. ...+ ..+.. +++.+.|+|++.++++++.|+.+++||+.
T Consensus 311 ~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 311 TIRVWDLETGSKLCLKLL-SGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR 364 (456)
T ss_pred cEEEEECCCCceeeeecc-cCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence 999999999983 4555 34444 59999999999999999999999999975
No 18
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=8.9e-37 Score=208.63 Aligned_cols=226 Identities=62% Similarity=1.016 Sum_probs=207.3
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
+||+.++..++.++.+....+|.++.|+|.|++|++|.+...+++||+++.++.........| .+.|+++.+++.+++.
T Consensus 198 lFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qh-t~ai~~V~Ys~t~~lY 276 (430)
T KOG0640|consen 198 LFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQH-TGAITQVRYSSTGSLY 276 (430)
T ss_pred EEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccc-ccceeEEEecCCccEE
Confidence 578888888888888889999999999999999999999999999999999988877754444 9999999999999999
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce---eeeeee
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT---HTQLRF 157 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~---~~~~~~ 157 (228)
++++.||.|++||--+++++.++...|.+..|.+..|..+++++++.+.|..+++|.+.+++.+..+.+.. .....+
T Consensus 277 vTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rt 356 (430)
T KOG0640|consen 277 VTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRT 356 (430)
T ss_pred EEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhh
Confidence 99999999999999999999999998889999999999999999999999999999999999999998752 233456
Q ss_pred EEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
...|+....|++.-....+.+.-||.+++.....+..+|++.+..+.-+|.+.-++||+.|-++++|-.+
T Consensus 357 qAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 357 QAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 7789999999999888889999999999999888888999999999999999999999999999999753
No 19
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.8e-36 Score=207.00 Aligned_cols=215 Identities=20% Similarity=0.369 Sum_probs=193.1
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
+||+... ...+....+|...|.+++|-|.|+++++++.|.+|+.|++.++.++..+..+ ..-|..++.+.||..+
T Consensus 176 LWd~~~~-~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h----~ewvr~v~v~~DGti~ 250 (406)
T KOG0295|consen 176 LWDFDTF-FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH----SEWVRMVRVNQDGTII 250 (406)
T ss_pred heeHHHH-HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc----hHhEEEEEecCCeeEE
Confidence 4666643 3344556789999999999999999999999999999999999999888754 6789999999999999
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCC---------------CCEEEEeeCCCeEEEEEccCCeeEE
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD---------------QRFVLSCGKDSTVKLWEVSSGRLVK 145 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~l~~~~~d~~i~~wd~~~~~~~~ 145 (228)
++|+.|.++++|-+.++++...+..| .-+|.+++|.|. ++++.+++.|++|++||+.++.++.
T Consensus 251 As~s~dqtl~vW~~~t~~~k~~lR~h--Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~ 328 (406)
T KOG0295|consen 251 ASCSNDQTLRVWVVATKQCKAELREH--EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF 328 (406)
T ss_pred EecCCCceEEEEEeccchhhhhhhcc--ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEE
Confidence 99999999999999999888888877 557888888764 2589999999999999999999999
Q ss_pred EEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 146 QYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
++.+ |...+..++|+|.|+|+++++. |+++++||++++++...+ ..|..-++++.|+.+-.+++||+-|..+++|.
T Consensus 329 tL~g--hdnwVr~~af~p~Gkyi~ScaD-Dktlrvwdl~~~~cmk~~-~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 329 TLVG--HDNWVRGVAFSPGGKYILSCAD-DKTLRVWDLKNLQCMKTL-EAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred EEec--ccceeeeeEEcCCCeEEEEEec-CCcEEEEEeccceeeecc-CCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 9988 8889999999999999999776 899999999999999999 59999999999999999999999999999997
Q ss_pred e
Q 040370 226 E 226 (228)
Q Consensus 226 ~ 226 (228)
-
T Consensus 405 c 405 (406)
T KOG0295|consen 405 C 405 (406)
T ss_pred c
Confidence 4
No 20
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.7e-36 Score=202.58 Aligned_cols=207 Identities=21% Similarity=0.320 Sum_probs=178.8
Q ss_pred eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEE
Q 040370 11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIR 90 (228)
Q Consensus 11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 90 (228)
+...+.+|.+.|..+.|+|+|..||+|+.|..|.+|+..... ..+....+| .++|..+.|.++++.+++++.|.+++
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgH-sgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGH-SGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccc-cceeEeeeeccCCCEEEEecCCceEE
Confidence 344556899999999999999999999999999999965322 122223345 99999999999999999999999999
Q ss_pred EEeCCCCceeeEEecccccceeEEEEECCCC-CEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEE
Q 040370 91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQ-RFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVL 169 (228)
Q Consensus 91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (228)
.||+++|+..++++.| ..-++++.-+.-| ..+.+++.|+++++||+|+...++++. .....+++.|...+..++
T Consensus 116 ~wD~~tG~~~rk~k~h--~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~---~kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGH--TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE---NKYQLTAVGFKDTSDQVI 190 (338)
T ss_pred EEecccceeeehhccc--cceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc---cceeEEEEEeccccccee
Confidence 9999999999999987 6778888744434 467789999999999999888887775 345678999999999999
Q ss_pred EeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 170 SIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 170 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+++- |+.|++||++.......+ .+|..+|+.+..+|+|.++.+-+.|.++++||++
T Consensus 191 sggI-dn~ikvWd~r~~d~~~~l-sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~r 246 (338)
T KOG0265|consen 191 SGGI-DNDIKVWDLRKNDGLYTL-SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVR 246 (338)
T ss_pred eccc-cCceeeeccccCcceEEe-ecccCceeeEEeccCCCccccccccceEEEEEec
Confidence 8776 799999999999999988 8999999999999999999999999999999975
No 21
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.2e-36 Score=207.19 Aligned_cols=202 Identities=19% Similarity=0.338 Sum_probs=184.6
Q ss_pred EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEe
Q 040370 14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD 93 (228)
Q Consensus 14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd 93 (228)
.+.+|.+.|.|+++.|.+.+|++|+.|++++|||+.+++....+.. | ...|..+++++-..++++++.|+.|+.||
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltG---h-i~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTG---H-IETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecc---h-hheeeeeeecccCceEEEecCCCeeEEEe
Confidence 3458999999999999999999999999999999999998776653 3 78899999999999999999999999999
Q ss_pred CCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370 94 GVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE 173 (228)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
++..+.++.+.+| -..|.+++.+|.-..|++|+.|.++++||+++...+..+.+ |...+..+.+.|-...+++++
T Consensus 222 Le~nkvIR~YhGH--lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G--H~~~V~~V~~~~~dpqvit~S- 296 (460)
T KOG0285|consen 222 LEYNKVIRHYHGH--LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG--HTNPVASVMCQPTDPQVITGS- 296 (460)
T ss_pred chhhhhHHHhccc--cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC--CCCcceeEEeecCCCceEEec-
Confidence 9999999988876 77899999999999999999999999999999999999988 778889999999888888854
Q ss_pred CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 174 PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 174 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
.|++|++||++.++....+ ..|...|.+++.+|....+|+++.|. |+-|++
T Consensus 297 ~D~tvrlWDl~agkt~~tl-t~hkksvral~lhP~e~~fASas~dn-ik~w~~ 347 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTMITL-THHKKSVRALCLHPKENLFASASPDN-IKQWKL 347 (460)
T ss_pred CCceEEEeeeccCceeEee-ecccceeeEEecCCchhhhhccCCcc-ceeccC
Confidence 5899999999999999888 78999999999999999999999886 788875
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.2e-35 Score=219.56 Aligned_cols=202 Identities=22% Similarity=0.390 Sum_probs=181.3
Q ss_pred cCcceEEEEEeCCCCEEEEecCC-CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDH-PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS 96 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d-~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 96 (228)
...+|..++|+..|+.||.|+.. |++-||+.++...+...+ +| ...+++++++|||++++||++||.|+|||.++
T Consensus 306 s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ---gH-~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S 381 (893)
T KOG0291|consen 306 SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ---GH-SDRITSLAYSPDGQLIATGAEDGKVKVWNTQS 381 (893)
T ss_pred ccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecc---cc-ccceeeEEECCCCcEEEeccCCCcEEEEeccC
Confidence 34789999999999999988764 899999999876554443 23 78899999999999999999999999999999
Q ss_pred CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370 97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN 176 (228)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 176 (228)
+-+..++..| ...|+.+.|+..++.+++.+-||+|+.||+...+.-+++..+ .+....+++..|.|..+.+++.+.-
T Consensus 382 gfC~vTFteH--ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P-~p~QfscvavD~sGelV~AG~~d~F 458 (893)
T KOG0291|consen 382 GFCFVTFTEH--TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP-EPIQFSCVAVDPSGELVCAGAQDSF 458 (893)
T ss_pred ceEEEEeccC--CCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC-CceeeeEEEEcCCCCEEEeeccceE
Confidence 9999999987 789999999999999999999999999999999999888765 3455677888999999998877667
Q ss_pred eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 177 EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 177 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.|.+|++++|+.+-.+ .+|++||.+++|+|++..|+++|.|.+|++||+.
T Consensus 459 ~IfvWS~qTGqllDiL-sGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLDIL-SGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred EEEEEEeecCeeeehh-cCCCCcceeeEEccccCeEEeccccceEEEEEee
Confidence 8999999999999888 8999999999999999999999999999999974
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.9e-35 Score=220.68 Aligned_cols=216 Identities=14% Similarity=0.341 Sum_probs=189.3
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
||++... .-+++..+|...+++++++|||+++|+|++||.|+|||..++-|..++..+ .+.|+.+.|+..++.+
T Consensus 334 VweWqsE--sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteH----ts~Vt~v~f~~~g~~l 407 (893)
T KOG0291|consen 334 VWEWQSE--SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEH----TSGVTAVQFTARGNVL 407 (893)
T ss_pred EEEeecc--ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccC----CCceEEEEEEecCCEE
Confidence 4565532 345666789999999999999999999999999999999999998888754 8899999999999999
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCC-eEEEEEccCCeeEEEEecceeeeeeeEE
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS-TVKLWEVSSGRLVKQYLGATHTQLRFQA 159 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
++++-||+|+.||+...+..+++..+. +....|++..|.|..+++|+.|. .|++|++.+|+.+..+.+ |+.++..+
T Consensus 408 lssSLDGtVRAwDlkRYrNfRTft~P~-p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG--HEgPVs~l 484 (893)
T KOG0291|consen 408 LSSSLDGTVRAWDLKRYRNFRTFTSPE-PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG--HEGPVSGL 484 (893)
T ss_pred EEeecCCeEEeeeecccceeeeecCCC-ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC--CCCcceee
Confidence 999999999999999999999998865 66778999999999999999887 599999999999999988 88999999
Q ss_pred EECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 160 VFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+|+|.+..+++ ++.|.+|++||+-........ ..+...+..++|+|+|+.|+++..||.|.+||..
T Consensus 485 ~f~~~~~~LaS-~SWDkTVRiW~if~s~~~vEt-l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 485 SFSPDGSLLAS-GSWDKTVRIWDIFSSSGTVET-LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred EEccccCeEEe-ccccceEEEEEeeccCceeee-EeeccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence 99999996666 666999999998665433333 2567789999999999999999999999999964
No 24
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=9.1e-37 Score=218.70 Aligned_cols=215 Identities=20% Similarity=0.329 Sum_probs=184.1
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCC-Ce
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG-GM 79 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 79 (228)
||++.. ....+..+.+|..+|.+++|+++|..|++++.|+.|++||.++|++...+.. ...++|+.|+|++ +.
T Consensus 241 lW~vy~-~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-----~~~~~cvkf~pd~~n~ 314 (503)
T KOG0282|consen 241 LWNVYD-DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-----DKVPTCVKFHPDNQNI 314 (503)
T ss_pred EEEEec-CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-----CCCceeeecCCCCCcE
Confidence 466554 3344556679999999999999999999999999999999999999887765 6678999999988 79
Q ss_pred EEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEE--------------
Q 040370 80 YVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVK-------------- 145 (228)
Q Consensus 80 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~-------------- 145 (228)
|++|+.|+.|+.||+++++.++.+..| -+.|..+.|-+++.++++.+.|+++++|+.+.+-.+.
T Consensus 315 fl~G~sd~ki~~wDiRs~kvvqeYd~h--Lg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~ 392 (503)
T KOG0282|consen 315 FLVGGSDKKIRQWDIRSGKVVQEYDRH--LGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLT 392 (503)
T ss_pred EEEecCCCcEEEEeccchHHHHHHHhh--hhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCccee
Confidence 999999999999999999988887665 7799999999999999999999999999986543211
Q ss_pred --------------------------------EEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee
Q 040370 146 --------------------------------QYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS 193 (228)
Q Consensus 146 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 193 (228)
.++++......+.+.|+|+|.+++++.+ ||.+.+||.++-+.+..+
T Consensus 393 ~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGds-dG~v~~wdwkt~kl~~~l- 470 (503)
T KOG0282|consen 393 LHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDS-DGKVNFWDWKTTKLVSKL- 470 (503)
T ss_pred cCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecC-CccEEEeechhhhhhhcc-
Confidence 1223334555678899999999999766 799999999999999988
Q ss_pred cCCCCCcEEEEeCC-CCcEEEEecCCCCEEEee
Q 040370 194 SNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 194 ~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd 225 (228)
..|.+++..+.|+| ....+||||.||.|++|+
T Consensus 471 kah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 471 KAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 78999999999999 456899999999999996
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.2e-35 Score=194.07 Aligned_cols=207 Identities=19% Similarity=0.346 Sum_probs=172.6
Q ss_pred eeEEEeecC-cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370 11 RAFRVIQDT-HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI 89 (228)
Q Consensus 11 ~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 89 (228)
.+.+.+.|. +.|+.+...|+++.||+++. ..|++||+.++... ......+| .+.|+++.|..+|+.+++|++||++
T Consensus 31 ~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-Pv~t~e~h-~kNVtaVgF~~dgrWMyTgseDgt~ 107 (311)
T KOG0315|consen 31 ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-PVATFEGH-TKNVTAVGFQCDGRWMYTGSEDGTV 107 (311)
T ss_pred eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-ceeEEecc-CCceEEEEEeecCeEEEecCCCceE
Confidence 455555664 68999999999999998885 57999999987753 22222333 7889999999999999999999999
Q ss_pred EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEE
Q 040370 90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVL 169 (228)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (228)
+|||++.....+.+.. ..+|+++..+|+...|++|..+|.|++||+.+......+... ....+.++...|+|.+++
T Consensus 108 kIWdlR~~~~qR~~~~---~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe-~~~~i~sl~v~~dgsml~ 183 (311)
T KOG0315|consen 108 KIWDLRSLSCQRNYQH---NSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE-DDTSIQSLTVMPDGSMLA 183 (311)
T ss_pred EEEeccCcccchhccC---CCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC-CCcceeeEEEcCCCcEEE
Confidence 9999999666655543 689999999999999999999999999999987666665432 456788999999999999
Q ss_pred EeeCCCCeEEEEEcCCcc------eeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 170 SIDEPSNEIVIWDALTAE------KVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 170 ~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
+... .|..++|++-+.. ++.++ ..|.+.+..+.+||++++|+++|.|.+++||+.
T Consensus 184 a~nn-kG~cyvW~l~~~~~~s~l~P~~k~-~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 184 AANN-KGNCYVWRLLNHQTASELEPVHKF-QAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred EecC-CccEEEEEccCCCccccceEhhhe-ecccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence 9777 5999999987643 33334 689999999999999999999999999999986
No 26
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.3e-36 Score=207.41 Aligned_cols=217 Identities=21% Similarity=0.361 Sum_probs=183.7
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
+||+.+++. ...+.+|...+..++|+..|+++++++.|-.+++||.++.. ...+...+| ...|.+++|-|.|.++
T Consensus 134 v~D~~tg~~--e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~--~c~ks~~gh-~h~vS~V~f~P~gd~i 208 (406)
T KOG0295|consen 134 VFDTETGEL--ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF--RCIKSLIGH-EHGVSSVFFLPLGDHI 208 (406)
T ss_pred EEEccchhh--hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHH--HHHHHhcCc-ccceeeEEEEecCCee
Confidence 366665554 44456899999999999999999999999999999998732 122222233 7789999999999999
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV 160 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
++++.|.+|+.|++.++-++.++..| ...+..++.+.||..+++++.|.++++|-+.++++...+.. |...+.++.
T Consensus 209 lS~srD~tik~We~~tg~cv~t~~~h--~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~--hEh~vEci~ 284 (406)
T KOG0295|consen 209 LSCSRDNTIKAWECDTGYCVKTFPGH--SEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELRE--HEHPVECIA 284 (406)
T ss_pred eecccccceeEEecccceeEEeccCc--hHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhc--cccceEEEE
Confidence 99999999999999999999999987 66999999999999999999999999999999877777766 444455555
Q ss_pred ECCC--------------CcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 161 FNDT--------------EEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 161 ~~~~--------------~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
|.|. +..++.+++.|++|++||+.++.++.++ .+|.+.|..++|+|.|+||+++.+|+++++||+
T Consensus 285 wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL-~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl 363 (406)
T KOG0295|consen 285 WAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL-VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDL 363 (406)
T ss_pred ecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE-ecccceeeeeEEcCCCeEEEEEecCCcEEEEEe
Confidence 5432 2346666788999999999999999999 799999999999999999999999999999997
Q ss_pred c
Q 040370 227 I 227 (228)
Q Consensus 227 ~ 227 (228)
.
T Consensus 364 ~ 364 (406)
T KOG0295|consen 364 K 364 (406)
T ss_pred c
Confidence 4
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6e-35 Score=208.96 Aligned_cols=207 Identities=17% Similarity=0.311 Sum_probs=180.1
Q ss_pred eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEE
Q 040370 11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIR 90 (228)
Q Consensus 11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 90 (228)
....+..|.++|.++.|+..|.+|++++.|+++.+||..+++..+.+... ..+-..+.|-.+ ..|++++.||.|+
T Consensus 268 l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~----s~~~lDVdW~~~-~~F~ts~td~~i~ 342 (524)
T KOG0273|consen 268 LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFH----SAPALDVDWQSN-DEFATSSTDGCIH 342 (524)
T ss_pred hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeec----cCCccceEEecC-ceEeecCCCceEE
Confidence 34455579999999999999999999999999999999999887766653 445577888744 4699999999999
Q ss_pred EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCC-----
Q 040370 91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE----- 165 (228)
Q Consensus 91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 165 (228)
|+.+....+..++.+| ..+|.++.|+|.+.+|++++.|+++++|..........+.. |...++.+.|+|.+
T Consensus 343 V~kv~~~~P~~t~~GH--~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~--Hskei~t~~wsp~g~v~~n 418 (524)
T KOG0273|consen 343 VCKVGEDRPVKTFIGH--HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQA--HSKEIYTIKWSPTGPVTSN 418 (524)
T ss_pred EEEecCCCcceeeecc--cCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhh--hccceeeEeecCCCCccCC
Confidence 9999999999999985 67999999999999999999999999999988888888776 67778888887754
Q ss_pred ---cEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 166 ---EFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 166 ---~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
...+++++.|++|++||+..+.++..+ ..|..+|.+++|+|+++++|+|+.||.|.+|+..
T Consensus 419 ~~~~~~l~sas~dstV~lwdv~~gv~i~~f-~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 419 PNMNLMLASASFDSTVKLWDVESGVPIHTL-MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred CcCCceEEEeecCCeEEEEEccCCceeEee-ccCCCceEEEEecCCCcEEEecCCCCeeEecccc
Confidence 234444555899999999999999998 7899999999999999999999999999999864
No 28
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-35 Score=209.93 Aligned_cols=210 Identities=15% Similarity=0.305 Sum_probs=169.1
Q ss_pred EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEe
Q 040370 14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD 93 (228)
Q Consensus 14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd 93 (228)
.+..|+.+|.-+.||++|++||+++.|.+..+|.+.............+| ..+|..+.||||.+++++|+.|..+.+||
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh-~~~V~yi~wSPDdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGH-SQPVSYIMWSPDDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecc-cCceEEEEECCCCCeEEecCchHheeecc
Confidence 34479999999999999999999999999999998776655545555555 88999999999999999999999999999
Q ss_pred CCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC----------------------eeE-------
Q 040370 94 GVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG----------------------RLV------- 144 (228)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~----------------------~~~------- 144 (228)
+.+|.....+... ....+.+++|.|||..+++|+.|+++..||+... +.+
T Consensus 298 v~tgd~~~~y~~~-~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~ 376 (519)
T KOG0293|consen 298 VDTGDLRHLYPSG-LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDK 376 (519)
T ss_pred CCcchhhhhcccC-cCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEeccc
Confidence 9999988877654 3678889999999999999999999888877421 000
Q ss_pred ------------------------------------------------------EEEecceeeeeeeEEEECCCCcEEEE
Q 040370 145 ------------------------------------------------------KQYLGATHTQLRFQAVFNDTEEFVLS 170 (228)
Q Consensus 145 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
.++.++.....+...+|......+++
T Consensus 377 ~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fia 456 (519)
T KOG0293|consen 377 KIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIA 456 (519)
T ss_pred ceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEE
Confidence 00111112223334445444545666
Q ss_pred eeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeee
Q 040370 171 IDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 171 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~ 226 (228)
+|++|+.|+||+..+++++..+ .+|...|++++|+| +..++|++|.||+|+||.+
T Consensus 457 SGSED~kvyIWhr~sgkll~~L-sGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 457 SGSEDSKVYIWHRISGKLLAVL-SGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred ecCCCceEEEEEccCCceeEee-cCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 7888999999999999999999 89999999999999 6678999999999999975
No 29
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.2e-35 Score=193.37 Aligned_cols=214 Identities=19% Similarity=0.266 Sum_probs=177.7
Q ss_pred cccceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCeEEEEe
Q 040370 7 ATAKRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGMYVTAS 84 (228)
Q Consensus 7 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~ 84 (228)
+..........-.+.+..++|++ ..+.+++++.||++++||+.... ..+...+.| ...|.++.|++ .++.++++|
T Consensus 48 ~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s--~Pi~~~kEH-~~EV~Svdwn~~~r~~~ltsS 124 (311)
T KOG0277|consen 48 PKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS--KPIHKFKEH-KREVYSVDWNTVRRRIFLTSS 124 (311)
T ss_pred CCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCC--cchhHHHhh-hhheEEeccccccceeEEeec
Confidence 33444445556678999999999 45678889999999999964432 233333344 88999999998 566888999
Q ss_pred cCCeEEEEeCCCCceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECC
Q 040370 85 KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFND 163 (228)
Q Consensus 85 ~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (228)
.|++|++|+...++.+.++.+| ...|...+|+| ..+.+++++.|+.+++||++.......+.. |...+.++.|+.
T Consensus 125 WD~TiKLW~~~r~~Sv~Tf~gh--~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a--h~~Eil~cdw~k 200 (311)
T KOG0277|consen 125 WDGTIKLWDPNRPNSVQTFNGH--NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA--HNSEILCCDWSK 200 (311)
T ss_pred cCCceEeecCCCCcceEeecCC--ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe--ccceeEeecccc
Confidence 9999999999999999999886 78999999999 778999999999999999997655555655 567889999999
Q ss_pred CCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCC-CcEEEEecCCCCEEEeeec
Q 040370 164 TEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPA-EAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 164 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~ 227 (228)
...+++++++.|+.|+.||+++.+.......+|.-.|..++|||. ...|++++.|-+++|||..
T Consensus 201 y~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 201 YNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPE 265 (311)
T ss_pred cCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccc
Confidence 999999999999999999999877655444899999999999994 5689999999999999964
No 30
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.4e-33 Score=196.23 Aligned_cols=216 Identities=18% Similarity=0.281 Sum_probs=185.8
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
||+..... ...++.+|...|+++.|+.+|.+||+|.-+|.|+||+..++.....+... -..|.-+.|+|.+..|
T Consensus 90 lW~~~~ge--~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e----~~dieWl~WHp~a~il 163 (399)
T KOG0296|consen 90 LWDISTGE--FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE----VEDIEWLKWHPRAHIL 163 (399)
T ss_pred EEEccCCc--ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecc----cCceEEEEecccccEE
Confidence 57777555 67888899999999999999999999999999999999998876666422 5678899999999999
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecc----------
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA---------- 150 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~---------- 150 (228)
++|+.||.+.+|.+.++...+.+.+| ..++++=.|.|+|+.++++..||+|++|++.+++++..+...
T Consensus 164 lAG~~DGsvWmw~ip~~~~~kv~~Gh--~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~ 241 (399)
T KOG0296|consen 164 LAGSTDGSVWMWQIPSQALCKVMSGH--NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISL 241 (399)
T ss_pred EeecCCCcEEEEECCCcceeeEecCC--CCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccc
Confidence 99999999999999998888888886 789999999999999999999999999999988776554410
Q ss_pred --------------------------------------------------------------------------------
Q 040370 151 -------------------------------------------------------------------------------- 150 (228)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (228)
T Consensus 242 ~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R 321 (399)
T KOG0296|consen 242 NLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR 321 (399)
T ss_pred ccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh
Confidence
Q ss_pred ---eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 151 ---THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 151 ---~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.|...+..+.|-+ ..++++++. ||.|+.||.|+|+....+ .+|...|.+++++|+.++++|+|.|++.+||+..
T Consensus 322 ~~c~he~~V~~l~w~~-t~~l~t~c~-~g~v~~wDaRtG~l~~~y-~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 322 HICEHEDGVTKLKWLN-TDYLLTACA-NGKVRQWDARTGQLKFTY-TGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeccCCCceEEEEEcC-cchheeecc-CceEEeeeccccceEEEE-ecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 0123344556666 667777666 799999999999999998 8999999999999999999999999999999863
No 31
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-34 Score=213.90 Aligned_cols=214 Identities=21% Similarity=0.341 Sum_probs=187.1
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
|||.++...-+.++. ...||++..|-+..+.+++|++|..|+||+..+++.+..+..+ ...|++++.+|...++
T Consensus 39 IWnyetqtmVksfeV--~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH----~DyIR~iavHPt~P~v 112 (794)
T KOG0276|consen 39 IWNYETQTMVKSFEV--SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAH----SDYIRSIAVHPTLPYV 112 (794)
T ss_pred EEecccceeeeeeee--cccchhhheeeeccceEEEecCCceEEEEecccceeeEEeecc----ccceeeeeecCCCCeE
Confidence 577775554444443 5679999999999999999999999999999999988777643 8899999999999999
Q ss_pred EEEecCCeEEEEeCCCC-ceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeE
Q 040370 81 VTASKDGAIRLWDGVSA-NCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQ 158 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 158 (228)
+|+|.|-+|++||.+.+ .+.+.+.+| .-.|++++|+| |.+.+++++-|++|++|.+.+..+..++++ |...+.+
T Consensus 113 LtsSDDm~iKlW~we~~wa~~qtfeGH--~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~g--HekGVN~ 188 (794)
T KOG0276|consen 113 LTSSDDMTIKLWDWENEWACEQTFEGH--EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEG--HEKGVNC 188 (794)
T ss_pred EecCCccEEEEeeccCceeeeeEEcCc--ceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeec--cccCcce
Confidence 99999999999999865 567788887 56899999999 778999999999999999999989999987 6677778
Q ss_pred EEECCCC--cEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 159 AVFNDTE--EFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 159 ~~~~~~~--~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
+.+-+.+ +++++ |++|..+++||..+..++.++ .+|...|+.+.|+|.-..++|||+||+++||..
T Consensus 189 Vdyy~~gdkpylIs-gaDD~tiKvWDyQtk~CV~TL-eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 189 VDYYTGGDKPYLIS-GADDLTIKVWDYQTKSCVQTL-EGHTNNVSFVFFHPELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred EEeccCCCcceEEe-cCCCceEEEeecchHHHHHHh-hcccccceEEEecCCCcEEEEecCCccEEEecC
Confidence 8776654 67776 555899999999999999998 899999999999999999999999999999974
No 32
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=7.5e-33 Score=211.81 Aligned_cols=213 Identities=9% Similarity=0.181 Sum_probs=162.2
Q ss_pred eeEEEeecCcceEEEEEeCC-CCEEEEecCCCeEEEEEcccceE-Eee----eccceeeeccceeeEEeCCCCCe-EEEE
Q 040370 11 RAFRVIQDTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQC-YLS----ANVPEISVNGAINQVRYSSTGGM-YVTA 83 (228)
Q Consensus 11 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~-~~~----~~~~~~~~~~~i~~~~~~~~~~~-l~~~ 83 (228)
....+.+|..+|.+++|+|+ +.+|++|+.|+.|+|||+.++.. ... ..... .|...|.+++|+|++.. ++++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~-gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK-GHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee-cCCCcEEEEEECCCCCeEEEEE
Confidence 44566789999999999996 78999999999999999986431 111 11112 23789999999998875 5789
Q ss_pred ecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeee---eeeEEE
Q 040370 84 SKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQ---LRFQAV 160 (228)
Q Consensus 84 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~---~~~~~~ 160 (228)
+.|+.|++||+++++....+.. ...|.+++|+|+|.+|++++.|+.|++||+++++.+..+.+|.... .+....
T Consensus 145 S~DgtIrIWDl~tg~~~~~i~~---~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~ 221 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQINM---PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDG 221 (568)
T ss_pred eCCCeEEEEECCCCcEEEEEec---CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeee
Confidence 9999999999999987766642 4679999999999999999999999999999999888887753321 122234
Q ss_pred ECCCCcEEEEeeCCC---CeEEEEEcCC-cceeEEee-cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 161 FNDTEEFVLSIDEPS---NEIVIWDALT-AEKVAKWS-SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 161 ~~~~~~~~~~~~~~d---~~i~i~d~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
|++++.+++++|..+ +.|++||+++ ++++.... ..+.+.+......+++.++++|+.|+.|++|++.
T Consensus 222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence 568889999988743 4799999996 44454431 2233333444445578899999999999999974
No 33
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-34 Score=217.15 Aligned_cols=208 Identities=23% Similarity=0.344 Sum_probs=185.2
Q ss_pred eEEEeecCcceEEEEEeCC-CCEEEEecCCCeEEEEEcccceEEee-----eccceeeeccceeeEEeCCCCCeEEEEec
Q 040370 12 AFRVIQDTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQCYLS-----ANVPEISVNGAINQVRYSSTGGMYVTASK 85 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 85 (228)
.....+|+..|.+++++.. ..+|++++.|.++++|++...+.... .+.....|...|+|++.+|+.++++|||.
T Consensus 404 ~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~Sq 483 (775)
T KOG0319|consen 404 VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQ 483 (775)
T ss_pred hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccc
Confidence 3345689999999999874 46889999999999999987332111 11112234889999999999999999999
Q ss_pred CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCC
Q 040370 86 DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE 165 (228)
Q Consensus 86 dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (228)
|.+.+||+++..+....+.+| ...+.++.|+|..+.++|++.|++|++|.+.+..++.++.+ |...+..+.|-.++
T Consensus 484 DktaKiW~le~~~l~~vLsGH--~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG--H~~aVlra~F~~~~ 559 (775)
T KOG0319|consen 484 DKTAKIWDLEQLRLLGVLSGH--TRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG--HTSAVLRASFIRNG 559 (775)
T ss_pred ccceeeecccCceEEEEeeCC--ccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC--ccceeEeeeeeeCC
Confidence 999999999999999999987 78999999999999999999999999999999999999998 78889999999999
Q ss_pred cEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 166 EFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 166 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
..++++++ ||-+++|+++++++..++ ..|+..|.+++.+|....++||+.||.|.+|.
T Consensus 560 ~qliS~~a-dGliKlWnikt~eC~~tl-D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 560 KQLISAGA-DGLIKLWNIKTNECEMTL-DAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred cEEEeccC-CCcEEEEeccchhhhhhh-hhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 99999888 799999999999999999 89999999999999999999999999999996
No 34
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=7.7e-35 Score=193.56 Aligned_cols=204 Identities=22% Similarity=0.405 Sum_probs=176.4
Q ss_pred EEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEE
Q 040370 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLW 92 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw 92 (228)
+..+.|..-|.+++|+.|.++|++|+.+..++|+|++..+. ......+| .+.|..+.|....+.|++++.|++|++|
T Consensus 94 lhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A--pp~E~~gh-tg~Ir~v~wc~eD~~iLSSadd~tVRLW 170 (334)
T KOG0278|consen 94 LHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA--PPKEISGH-TGGIRTVLWCHEDKCILSSADDKTVRLW 170 (334)
T ss_pred hhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCC--CchhhcCC-CCcceeEEEeccCceEEeeccCCceEEE
Confidence 34457999999999999999999999999999999987652 22333344 8899999999988999999999999999
Q ss_pred eCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370 93 DGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID 172 (228)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
|.+++..++.+.. ..+|+++.++++|.+|.++ ..+.|++||..+...+..++. +..+.+...+|+...+++ |
T Consensus 171 D~rTgt~v~sL~~---~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~---P~nV~SASL~P~k~~fVa-G 242 (334)
T KOG0278|consen 171 DHRTGTEVQSLEF---NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM---PCNVESASLHPKKEFFVA-G 242 (334)
T ss_pred EeccCcEEEEEec---CCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC---ccccccccccCCCceEEe-c
Confidence 9999999999987 5689999999999876555 567899999999888887763 556778889999866665 5
Q ss_pred CCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 173 EPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 173 ~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
++|..++.||..+++.+..+..+|.++|.|+.|+|+|...++||+||+|++|.+.
T Consensus 243 ged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 243 GEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred CcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 5589999999999999988768999999999999999999999999999999864
No 35
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-34 Score=191.63 Aligned_cols=217 Identities=21% Similarity=0.319 Sum_probs=183.7
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCC
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGG 78 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 78 (228)
|||...+ ..++..+.+|..+|.++.|++ .+..+++++.|++|++|+...++.+.++.. | ...|...+|+| ..+
T Consensus 87 l~d~~~~-s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g---h-~~~Iy~a~~sp~~~n 161 (311)
T KOG0277|consen 87 LFDLTMP-SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG---H-NSCIYQAAFSPHIPN 161 (311)
T ss_pred EeccCCC-CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC---C-ccEEEEEecCCCCCC
Confidence 4674433 345666678999999999999 677788999999999999998887776543 3 88999999999 578
Q ss_pred eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCe-eEEEEecceeeeee
Q 040370 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGR-LVKQYLGATHTQLR 156 (228)
Q Consensus 79 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~ 156 (228)
.++++|.|+++++||++.......+..| ..++.++.|+. +.+.++||+.|+.|+.||+++.+ ++..+.+ |.-.+
T Consensus 162 lfas~Sgd~~l~lwdvr~~gk~~~i~ah--~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~g--h~~AV 237 (311)
T KOG0277|consen 162 LFASASGDGTLRLWDVRSPGKFMSIEAH--NSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNG--HGLAV 237 (311)
T ss_pred eEEEccCCceEEEEEecCCCceeEEEec--cceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecC--CceEE
Confidence 9999999999999999976555557766 67999999998 77789999999999999999865 3455544 88899
Q ss_pred eEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeee
Q 040370 157 FQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~ 226 (228)
..+.|+|....++++++.|-+++|||...+.........|..-+..+.|++ ++.++|+++.|+.++||+.
T Consensus 238 Rkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 238 RKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 999999999999999999999999999876665555478999999999998 6789999999999999985
No 36
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-32 Score=199.14 Aligned_cols=217 Identities=17% Similarity=0.221 Sum_probs=171.6
Q ss_pred cceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe
Q 040370 9 AKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA 88 (228)
Q Consensus 9 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 88 (228)
.+-......|..-|+|+.|+|||+++|+++.||.+.+||-.+++.+..+.....| ++.|.++.|+||++.++|++.|.+
T Consensus 180 FKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aH-kGsIfalsWsPDs~~~~T~SaDkt 258 (603)
T KOG0318|consen 180 FKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAH-KGSIFALSWSPDSTQFLTVSADKT 258 (603)
T ss_pred eeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCc-cccEEEEEECCCCceEEEecCCce
Confidence 3444445579999999999999999999999999999999999988887764445 999999999999999999999999
Q ss_pred EEEEeCCCCceeeEEecc-----------------------------------------cccceeEEEEECCCCCEEEEe
Q 040370 89 IRLWDGVSANCVRSIVGA-----------------------------------------HGTAEATSANFTKDQRFVLSC 127 (228)
Q Consensus 89 v~iwd~~~~~~~~~~~~~-----------------------------------------~~~~~i~~~~~~~~~~~l~~~ 127 (228)
++|||+.+.++++++... .|...|+++..+|++++|++|
T Consensus 259 ~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sg 338 (603)
T KOG0318|consen 259 IKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSG 338 (603)
T ss_pred EEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEee
Confidence 999998877665554211 124566777777777777777
Q ss_pred eCCCeEEEEEcc--------------------------------------------------------------------
Q 040370 128 GKDSTVKLWEVS-------------------------------------------------------------------- 139 (228)
Q Consensus 128 ~~d~~i~~wd~~-------------------------------------------------------------------- 139 (228)
+.||.|.-||..
T Consensus 339 syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~ 418 (603)
T KOG0318|consen 339 SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGG 418 (603)
T ss_pred ccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCC
Confidence 777777777542
Q ss_pred -------------------------------------------------------CCeeEEEEecceeeeeeeEEEECCC
Q 040370 140 -------------------------------------------------------SGRLVKQYLGATHTQLRFQAVFNDT 164 (228)
Q Consensus 140 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (228)
............|...++.++++|+
T Consensus 419 ~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd 498 (603)
T KOG0318|consen 419 TAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPD 498 (603)
T ss_pred EEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCC
Confidence 1111111112236678899999999
Q ss_pred CcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 165 EEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 165 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+.|++++.. .+.+.+||..+.+.....-.-|...|.+++|+|+..++|||+.|..|.||++.
T Consensus 499 ~~yla~~Da-~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 499 GAYLAAGDA-SRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred CcEEEEecc-CCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence 999999776 59999999998877444334599999999999999999999999999999863
No 37
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.1e-34 Score=205.78 Aligned_cols=206 Identities=20% Similarity=0.421 Sum_probs=175.9
Q ss_pred eeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEccc-ceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe
Q 040370 11 RAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNT-FQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA 88 (228)
Q Consensus 11 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 88 (228)
......+|+..|.++.|.| .+.+|++++.|+.|+||++-. +.++..+. +| ..+|.+++|+++|..|++++.|+.
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~---gH-~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK---GH-RKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh---cc-hhhhhhhhccccCCeeeeeeccee
Confidence 3456669999999999999 899999999999999999987 55655544 33 899999999999999999999999
Q ss_pred EEEEeCCCCceeeEEecccccceeEEEEECCCC-CEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370 89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQ-RFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF 167 (228)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (228)
+++||+++|++...+.. ...++++.|+|++ +.+++|+.|+.|+.||+++++.++.+.. |-..+..+.|-+++..
T Consensus 282 lKlwDtETG~~~~~f~~---~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~--hLg~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHL---DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR--HLGAILDITFVDEGRR 356 (503)
T ss_pred eeeeccccceEEEEEec---CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh--hhhheeeeEEccCCce
Confidence 99999999999999977 5688999999988 8899999999999999999998888865 7788899999999999
Q ss_pred EEEeeCCCCeEEEEEcCCcceeEEe---------------------------------------------ecCCC--CCc
Q 040370 168 VLSIDEPSNEIVIWDALTAEKVAKW---------------------------------------------SSNHI--GAP 200 (228)
Q Consensus 168 ~~~~~~~d~~i~i~d~~~~~~~~~~---------------------------------------------~~~~~--~~v 200 (228)
++++.. |++++||+.+.+-.+... ..+|. +.-
T Consensus 357 FissSD-dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 357 FISSSD-DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS 435 (503)
T ss_pred Eeeecc-CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence 998665 799999998654221110 12443 345
Q ss_pred EEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 201 RWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 201 ~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
..+.|||||.+|++|+.||.+.+||-
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdw 461 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDW 461 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeec
Confidence 67899999999999999999999995
No 38
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=7.1e-35 Score=202.23 Aligned_cols=205 Identities=22% Similarity=0.374 Sum_probs=168.1
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
|||.++. .....+.+|++.|.|+.| +.+.+++|+.|.+|+|||.++++++..+. ||...|..+.|+ ..++
T Consensus 221 iWD~n~~--~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tli----hHceaVLhlrf~--ng~m 290 (499)
T KOG0281|consen 221 IWDKNSL--ECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLI----HHCEAVLHLRFS--NGYM 290 (499)
T ss_pred EeccccH--HHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHh----hhcceeEEEEEe--CCEE
Confidence 4666633 334456699999999999 56799999999999999999999876654 448899999997 5689
Q ss_pred EEEecCCeEEEEeCCCCce---eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeee
Q 040370 81 VTASKDGAIRLWDGVSANC---VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRF 157 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 157 (228)
++++.|.++.+||+.+... .+.+.+| ...|+.+.|+ .+++++++.|.+|++|++.+++.++++.+ |...+.
T Consensus 291 vtcSkDrsiaVWdm~sps~it~rrVLvGH--rAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~g--HkRGIA 364 (499)
T KOG0281|consen 291 VTCSKDRSIAVWDMASPTDITLRRVLVGH--RAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNG--HKRGIA 364 (499)
T ss_pred EEecCCceeEEEeccCchHHHHHHHHhhh--hhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhc--ccccce
Confidence 9999999999999987642 2344454 7789999886 56999999999999999999999999987 444444
Q ss_pred EEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
++.+ .+++++ +|+.|.+|++||+..|.++..+ .+|+.-|.++.| +.+.+++|+.||+|++||+.
T Consensus 365 ClQY--r~rlvV-SGSSDntIRlwdi~~G~cLRvL-eGHEeLvRciRF--d~krIVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 365 CLQY--RDRLVV-SGSSDNTIRLWDIECGACLRVL-EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQ 428 (499)
T ss_pred ehhc--cCeEEE-ecCCCceEEEEeccccHHHHHH-hchHHhhhheee--cCceeeeccccceEEEEecc
Confidence 4433 345555 4666999999999999999888 899999999999 56789999999999999974
No 39
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.3e-32 Score=220.80 Aligned_cols=205 Identities=13% Similarity=0.288 Sum_probs=164.7
Q ss_pred EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEe---eeccceeeeccceeeEEeCC-CCCeEEEEecCCeEE
Q 040370 15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYL---SANVPEISVNGAINQVRYSS-TGGMYVTASKDGAIR 90 (228)
Q Consensus 15 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~ 90 (228)
+..|...|.+++|+|++++||+|+.|+.|+||+........ ........+...+.+++|+| .+.+|++++.||+|+
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 34589999999999999999999999999999976421000 00000111146789999987 478999999999999
Q ss_pred EEeCCCCceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECC-CCcEE
Q 040370 91 LWDGVSANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFND-TEEFV 168 (228)
Q Consensus 91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 168 (228)
+||+.+++.+..+..| ...|.+++|+| ++.+|++|+.|+.|++||++++..+..+.. ...+.++.|.+ ++.++
T Consensus 559 lWd~~~~~~~~~~~~H--~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~---~~~v~~v~~~~~~g~~l 633 (793)
T PLN00181 559 VWDVARSQLVTEMKEH--EKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT---KANICCVQFPSESGRSL 633 (793)
T ss_pred EEECCCCeEEEEecCC--CCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec---CCCeEEEEEeCCCCCEE
Confidence 9999999888888775 77899999997 788999999999999999999888877764 24567778855 56666
Q ss_pred EEeeCCCCeEEEEEcCCcce-eEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 169 LSIDEPSNEIVIWDALTAEK-VAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 169 ~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
++ ++.|+.|++||+++.+. ...+ .+|...|.++.|. ++.+|++++.|+.|++||+.
T Consensus 634 at-gs~dg~I~iwD~~~~~~~~~~~-~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 634 AF-GSADHKVYYYDLRNPKLPLCTM-IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred EE-EeCCCeEEEEECCCCCccceEe-cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence 65 55589999999988764 4444 6899999999997 67899999999999999974
No 40
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=8.4e-32 Score=194.43 Aligned_cols=213 Identities=27% Similarity=0.485 Sum_probs=180.4
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
+||+... +....+..|...|.++.|+|+++++++++.++.|.+||+.+++....... + ...+.+++|+|++.++
T Consensus 77 i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~-~~~i~~~~~~~~~~~l 150 (289)
T cd00200 77 LWDLETG--ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG---H-TDWVNSVAFSPDGTFV 150 (289)
T ss_pred EEEcCcc--cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc---C-CCcEEEEEEcCcCCEE
Confidence 3666543 33445557888999999999988999888899999999998776655542 2 6789999999998888
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV 160 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
++++.|+.|++||+++++....+..+ ...+.++.|+|+++.+++++.|+.+++||++.++.+..+.. +...+..+.
T Consensus 151 ~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~i~~~~ 226 (289)
T cd00200 151 ASSSQDGTIKLWDLRTGKCVATLTGH--TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG--HENGVNSVA 226 (289)
T ss_pred EEEcCCCcEEEEEccccccceeEecC--ccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh--cCCceEEEE
Confidence 88888999999999988888887754 66899999999999999999999999999998888777754 556788899
Q ss_pred ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
++|++.++++++ .|+.+++||+.+++....+ ..|...+.+++|+|++++|++++.||.+++|+
T Consensus 227 ~~~~~~~~~~~~-~~~~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 227 FSPDGYLLASGS-EDGTIRVWDLRTGECVQTL-SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EcCCCcEEEEEc-CCCcEEEEEcCCceeEEEc-cccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999966666644 4799999999988888877 58889999999999999999999999999996
No 41
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.1e-31 Score=193.73 Aligned_cols=203 Identities=28% Similarity=0.516 Sum_probs=176.2
Q ss_pred EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC
Q 040370 15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG 94 (228)
Q Consensus 15 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~ 94 (228)
+.+|..+|.+++|+|++++|++++.+|.+++|++.+++....... + ...+..+.|+|+++.+++++.||.|++||+
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~---~-~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG---H-TGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEec---C-CcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 447999999999999999999999999999999998765444332 2 667889999999999999999999999999
Q ss_pred CCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC
Q 040370 95 VSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP 174 (228)
Q Consensus 95 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
++++....+..+ ...+.++.|+++++++++++.|+.+++||+++++....+.. +...+..+.++|++.++++++ .
T Consensus 81 ~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~-~ 155 (289)
T cd00200 81 ETGECVRTLTGH--TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG--HTDWVNSVAFSPDGTFVASSS-Q 155 (289)
T ss_pred CcccceEEEecc--CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc--CCCcEEEEEEcCcCCEEEEEc-C
Confidence 988777777765 56899999999988888888899999999998888877764 566788999999977777655 4
Q ss_pred CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 175 SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 175 d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
|+.+++||+++++....+ ..|...+.++.|+|+++.+++++.|+.|++||+.
T Consensus 156 ~~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 207 (289)
T cd00200 156 DGTIKLWDLRTGKCVATL-TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207 (289)
T ss_pred CCcEEEEEccccccceeE-ecCccccceEEECCCcCEEEEecCCCcEEEEECC
Confidence 799999999988888777 5788899999999999999999999999999974
No 42
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.1e-32 Score=182.75 Aligned_cols=211 Identities=16% Similarity=0.312 Sum_probs=167.7
Q ss_pred CccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe
Q 040370 5 SKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS 84 (228)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 84 (228)
.....+..-.+.+|..+|.|++|+++|++||+++.|..|-||....+.........+.| ...|..+.|+|...+|++++
T Consensus 91 ~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H-tqDVK~V~WHPt~dlL~S~S 169 (312)
T KOG0645|consen 91 EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH-TQDVKHVIWHPTEDLLFSCS 169 (312)
T ss_pred CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc-cccccEEEEcCCcceeEEec
Confidence 33444556667799999999999999999999999999999999876655555555555 88999999999999999999
Q ss_pred cCCeEEEEeCCC---CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEE
Q 040370 85 KDGAIRLWDGVS---ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVF 161 (228)
Q Consensus 85 ~dg~v~iwd~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 161 (228)
.|.+|++|+-.. -++.+++..+ ...|.+++|++.|..|++++.|++++||-..+. +. ..+...++.+.|
T Consensus 170 YDnTIk~~~~~~dddW~c~~tl~g~--~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~sr~~Y~v~W 241 (312)
T KOG0645|consen 170 YDNTIKVYRDEDDDDWECVQTLDGH--ENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LS-GMHSRALYDVPW 241 (312)
T ss_pred cCCeEEEEeecCCCCeeEEEEecCc--cceEEEEEecCCCceEEEecCCcceEeeeeccC-----cc-hhcccceEeeee
Confidence 999999998662 3567778776 559999999999999999999999999986632 11 225556677777
Q ss_pred CCCCcEEEEeeCCCCeEEEEEcCCc------ceeEEeecCCCCCcEEEEeCCC-CcEEEEecCCCCEEEeeec
Q 040370 162 NDTEEFVLSIDEPSNEIVIWDALTA------EKVAKWSSNHIGAPRWIEHSPA-EAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 162 ~~~~~~~~~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~ 227 (228)
. ...++++++ |+.|++|.-... +.+......|...|++++|.|. .++|++||.||.|++|.+.
T Consensus 242 ~--~~~IaS~gg-D~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 242 D--NGVIASGGG-DDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred c--ccceEeccC-CCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 7 445555555 899999976542 1222223579999999999994 7899999999999999875
No 43
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.1e-33 Score=193.82 Aligned_cols=212 Identities=18% Similarity=0.304 Sum_probs=187.5
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
|||+..+ +..+.+.+|-..|..+++++-..|+++++.|+.|+.||++..+.+..+. +| -+.|.|++.+|.-..|
T Consensus 177 IwDlatg--~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Yh---GH-lS~V~~L~lhPTldvl 250 (460)
T KOG0285|consen 177 IWDLATG--QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYH---GH-LSGVYCLDLHPTLDVL 250 (460)
T ss_pred EEEcccC--eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhc---cc-cceeEEEeccccceeE
Confidence 6888854 4456677899999999999999999999999999999999988665544 34 7889999999999999
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV 160 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
++|+.|.++++||+++...+..+.+| ..+|..+.+.|....+++|+.|++|++||++.++....+.. |...+.+++
T Consensus 251 ~t~grDst~RvWDiRtr~~V~~l~GH--~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~--hkksvral~ 326 (460)
T KOG0285|consen 251 VTGGRDSTIRVWDIRTRASVHVLSGH--TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTH--HKKSVRALC 326 (460)
T ss_pred EecCCcceEEEeeecccceEEEecCC--CCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeec--ccceeeEEe
Confidence 99999999999999999999999987 78999999999888899999999999999999999888876 777888999
Q ss_pred ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
.+|....+++++. ..|+-|++..+..+..+ .+|...+++++...|+ ++++|+++|.+.+||-
T Consensus 327 lhP~e~~fASas~--dnik~w~~p~g~f~~nl-sgh~~iintl~~nsD~-v~~~G~dng~~~fwdw 388 (460)
T KOG0285|consen 327 LHPKENLFASASP--DNIKQWKLPEGEFLQNL-SGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDW 388 (460)
T ss_pred cCCchhhhhccCC--ccceeccCCccchhhcc-ccccceeeeeeeccCc-eEEEcCCceEEEEEec
Confidence 9998776666544 67999999999998886 8999999999998766 6889999999999995
No 44
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-32 Score=201.46 Aligned_cols=219 Identities=18% Similarity=0.339 Sum_probs=182.5
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeecc-c-------------------
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANV-P------------------- 60 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~------------------- 60 (228)
+|+...........+ +...|+++.|+++|.+|++|..+|.|.|||..+.+....+.. +
T Consensus 201 lW~~~s~~v~~l~~~--~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr 278 (484)
T KOG0305|consen 201 LWSASSGSVTELCSF--GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSR 278 (484)
T ss_pred EEecCCCceEEeEec--CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecC
Confidence 366555554444443 278999999999999999999999999999765443222221 0
Q ss_pred ------------------eeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC-CC
Q 040370 61 ------------------EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-DQ 121 (228)
Q Consensus 61 ------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 121 (228)
..+|...|..++|+++++++|+|+.|+.+.|||....++...+..| ...|.+++|+| ..
T Consensus 279 ~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H--~aAVKA~awcP~q~ 356 (484)
T KOG0305|consen 279 DGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEH--TAAVKALAWCPWQS 356 (484)
T ss_pred CCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEecc--ceeeeEeeeCCCcc
Confidence 1234888999999999999999999999999999888888888876 88999999999 67
Q ss_pred CEEEEee--CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE-eeCCCCeEEEEEcCCcceeEEeecCCCC
Q 040370 122 RFVLSCG--KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS-IDEPSNEIVIWDALTAEKVAKWSSNHIG 198 (228)
Q Consensus 122 ~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 198 (228)
..||+|+ .|+.|++||..+++.+.... ....++.+.|++..+.+++ -|..++.|.||+..+.+.+..+ .+|..
T Consensus 357 ~lLAsGGGs~D~~i~fwn~~~g~~i~~vd---tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l-~gH~~ 432 (484)
T KOG0305|consen 357 GLLATGGGSADRCIKFWNTNTGARIDSVD---TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL-LGHTS 432 (484)
T ss_pred CceEEcCCCcccEEEEEEcCCCcEecccc---cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee-cCCcc
Confidence 7888875 79999999999999888775 5678899999998865554 4556789999999998888888 79999
Q ss_pred CcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 199 APRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 199 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.|..++++|+|..+++|+.|.++++|+++
T Consensus 433 RVl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 433 RVLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred eeEEEEECCCCCEEEEecccCcEEecccc
Confidence 99999999999999999999999999974
No 45
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.2e-33 Score=207.25 Aligned_cols=211 Identities=18% Similarity=0.306 Sum_probs=178.1
Q ss_pred eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeee-ccceeeeccceeeEEeCCC-CCeEEEEecCCeE
Q 040370 12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSA-NVPEISVNGAINQVRYSST-GGMYVTASKDGAI 89 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v 89 (228)
+.-+.+|++.|.+++...+|.+|++|+.|.++++|.++++...... ....+| .+.|.+++++.. ..+|+++|.|+++
T Consensus 358 c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH-~~svgava~~~~~asffvsvS~D~tl 436 (775)
T KOG0319|consen 358 CQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGH-TNSVGAVAGSKLGASFFVSVSQDCTL 436 (775)
T ss_pred eEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccc-ccccceeeecccCccEEEEecCCceE
Confidence 3455689999999996668899999999999999999654433222 223344 899999999764 4589999999999
Q ss_pred EEEeCCCCce---eeEE----ecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEEC
Q 040370 90 RLWDGVSANC---VRSI----VGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFN 162 (228)
Q Consensus 90 ~iwd~~~~~~---~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (228)
++|++...+. ...+ ..+.|...|++++.+|+.++++||+.|++.++|++++.+...++.+ |...+.++.|+
T Consensus 437 K~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG--H~RGvw~V~Fs 514 (775)
T KOG0319|consen 437 KLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG--HTRGVWCVSFS 514 (775)
T ss_pred EEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeC--CccceEEEEec
Confidence 9999876221 1111 2233478999999999999999999999999999999999999988 77889999999
Q ss_pred CCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 163 DTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 163 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
|..+.++++++ |.+|+||.+.+..++.++ .+|...|..+.|-.++..|++++.||.+++|++.
T Consensus 515 ~~dq~laT~Sg-D~TvKIW~is~fSClkT~-eGH~~aVlra~F~~~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 515 KNDQLLATCSG-DKTVKIWSISTFSCLKTF-EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred cccceeEeccC-CceEEEEEeccceeeeee-cCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence 99998888766 899999999999999999 8999999999999999999999999999999963
No 46
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.3e-31 Score=215.90 Aligned_cols=214 Identities=14% Similarity=0.303 Sum_probs=171.4
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeC-CCCC
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYS-STGG 78 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 78 (228)
|||+... +....+.+|...|++++|+| ++.+|++|+.|+.|++||+.++.....+.. ...+.++.|+ +++.
T Consensus 559 lWd~~~~--~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-----~~~v~~v~~~~~~g~ 631 (793)
T PLN00181 559 VWDVARS--QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-----KANICCVQFPSESGR 631 (793)
T ss_pred EEECCCC--eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-----CCCeEEEEEeCCCCC
Confidence 4777643 34455668999999999997 789999999999999999998876655432 4578999995 4789
Q ss_pred eEEEEecCCeEEEEeCCCCc-eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC------eeEEEEecce
Q 040370 79 MYVTASKDGAIRLWDGVSAN-CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG------RLVKQYLGAT 151 (228)
Q Consensus 79 ~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~------~~~~~~~~~~ 151 (228)
+|++|+.||.|++||+++.+ ....+..| ...|.++.|. ++.++++++.|++|++||++.+ +.+..+.+
T Consensus 632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h--~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g-- 706 (793)
T PLN00181 632 SLAFGSADHKVYYYDLRNPKLPLCTMIGH--SKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG-- 706 (793)
T ss_pred EEEEEeCCCeEEEEECCCCCccceEecCC--CCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC--
Confidence 99999999999999998765 34555554 6789999997 6789999999999999999743 45666665
Q ss_pred eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee------------cCCCCCcEEEEeCCCCcEEEEecCCC
Q 040370 152 HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS------------SNHIGAPRWIEHSPAEAAFITCGTDR 219 (228)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~------------~~~~~~v~~~~~~~~~~~l~s~~~dg 219 (228)
|...+..+.+++++.++++++. |+.|++|+.....+...+. ..+...|.+++|+|++..|++|+.||
T Consensus 707 h~~~i~~v~~s~~~~~lasgs~-D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG 785 (793)
T PLN00181 707 HTNVKNFVGLSVSDGYIATGSE-TNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTG 785 (793)
T ss_pred CCCCeeEEEEcCCCCEEEEEeC-CCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCC
Confidence 5566778889999988777655 8999999987654432221 23456799999999999999999999
Q ss_pred CEEEeeec
Q 040370 220 SVRFWKEI 227 (228)
Q Consensus 220 ~i~vwd~~ 227 (228)
.|+||++.
T Consensus 786 ~I~i~~~~ 793 (793)
T PLN00181 786 NIKILEMV 793 (793)
T ss_pred cEEEEecC
Confidence 99999973
No 47
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.6e-32 Score=178.91 Aligned_cols=203 Identities=15% Similarity=0.197 Sum_probs=173.1
Q ss_pred ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370 10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI 89 (228)
Q Consensus 10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 89 (228)
++...+..+.++|.++.|+-+|+|.++++.|.+|++|+...+.+++.+..+ ...|..++.+.|...|++|+.|..+
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh----G~EVlD~~~s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH----GHEVLDAALSSDNSKFASCGGDKAV 83 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCC----CceeeeccccccccccccCCCCceE
Confidence 344555679999999999999999999999999999999999988877643 7789999999999999999999999
Q ss_pred EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC--eeEEEEecceeeeeeeEEEECCCCcE
Q 040370 90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG--RLVKQYLGATHTQLRFQAVFNDTEEF 167 (228)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (228)
.+||+++|+..+.+.+| ...|+.+.|+.+...+++|+.|..+++||.++. ++++.+.. ....+.++... +..
T Consensus 84 ~vwDV~TGkv~Rr~rgH--~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde--a~D~V~Si~v~--~he 157 (307)
T KOG0316|consen 84 QVWDVNTGKVDRRFRGH--LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE--AKDGVSSIDVA--EHE 157 (307)
T ss_pred EEEEcccCeeeeecccc--cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh--hcCceeEEEec--ccE
Confidence 99999999999999987 889999999999999999999999999999864 45555543 34445555442 344
Q ss_pred EEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 168 VLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 168 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
++ +|+.||+++.||++.|+...-. ...+|+++.|+++++..+.++.|+++++-|-
T Consensus 158 Iv-aGS~DGtvRtydiR~G~l~sDy---~g~pit~vs~s~d~nc~La~~l~stlrLlDk 212 (307)
T KOG0316|consen 158 IV-AGSVDGTVRTYDIRKGTLSSDY---FGHPITSVSFSKDGNCSLASSLDSTLRLLDK 212 (307)
T ss_pred EE-eeccCCcEEEEEeecceeehhh---cCCcceeEEecCCCCEEEEeeccceeeeccc
Confidence 44 4666999999999999887665 3459999999999999999999999999773
No 48
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-32 Score=210.25 Aligned_cols=217 Identities=21% Similarity=0.366 Sum_probs=181.0
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
+||+..... .-++.+|.++|+.++|+|++.++++|++|-.|+||+.++.+++.++. +| -..|..+.|++.-..+
T Consensus 35 lWDYRM~tl--i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~---GH-lDYVRt~~FHheyPWI 108 (1202)
T KOG0292|consen 35 LWDYRMGTL--IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLL---GH-LDYVRTVFFHHEYPWI 108 (1202)
T ss_pred eehhhhhhH--HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhc---cc-cceeEEeeccCCCceE
Confidence 477775544 33456899999999999999999999999999999999988766554 33 7889999999999999
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee-----------------
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL----------------- 143 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~----------------- 143 (228)
+++|.|.+|+||+.++++++..+.+| .-.|+|..|+|....++++|-|.+||+||+...+.
T Consensus 109 lSASDDQTIrIWNwqsr~~iavltGH--nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~ 186 (1202)
T KOG0292|consen 109 LSASDDQTIRIWNWQSRKCIAVLTGH--NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQG 186 (1202)
T ss_pred EEccCCCeEEEEeccCCceEEEEecC--ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhcccc
Confidence 99999999999999999999999998 55899999999999999999999999999853111
Q ss_pred ----------EEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCccee--EEeecCCCCCcEEEEeCCCCcE
Q 040370 144 ----------VKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKV--AKWSSNHIGAPRWIEHSPAEAA 211 (228)
Q Consensus 144 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~ 211 (228)
+.++....|...+.-++|+|.-+.++++ ++|+.|++|.+...+.- -+. .+|.+.|.++-|+|...+
T Consensus 187 ~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG-~DDRqVKlWrmnetKaWEvDtc-rgH~nnVssvlfhp~q~l 264 (1202)
T KOG0292|consen 187 NSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG-ADDRQVKLWRMNETKAWEVDTC-RGHYNNVSSVLFHPHQDL 264 (1202)
T ss_pred chhhcCCcCeeeeeeecccccccceEEecCCcceEEec-CCcceeeEEEeccccceeehhh-hcccCCcceEEecCccce
Confidence 1111112256667788999988888775 45899999998765542 223 699999999999999999
Q ss_pred EEEecCCCCEEEeeec
Q 040370 212 FITCGTDRSVRFWKEI 227 (228)
Q Consensus 212 l~s~~~dg~i~vwd~~ 227 (228)
+++.|+|++|+|||+.
T Consensus 265 IlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 265 ILSNSEDKSIRVWDMT 280 (1202)
T ss_pred eEecCCCccEEEEecc
Confidence 9999999999999974
No 49
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=7.4e-33 Score=189.54 Aligned_cols=215 Identities=16% Similarity=0.288 Sum_probs=176.9
Q ss_pred eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce------------EE---eeeccceeeeccceeeEEeCC
Q 040370 11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ------------CY---LSANVPEISVNGAINQVRYSS 75 (228)
Q Consensus 11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~------------~~---~~~~~~~~~~~~~i~~~~~~~ 75 (228)
+...+..|..++++.+|+|||.++|+|+.|-.|+|.|++..- .. ..++... .|...|+++.|+|
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~FHP 182 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDFHP 182 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceeecc
Confidence 344566899999999999999999999999999999987311 00 0111111 2378999999999
Q ss_pred CCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEE-ecceeee
Q 040370 76 TGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQY-LGATHTQ 154 (228)
Q Consensus 76 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~ 154 (228)
....|++|+.|++|+++|.......+-++......+|.++.|+|.|.+|+.|..-.++++||+.+-++...- ...+|..
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 999999999999999999986554444433333678999999999999999999999999999987764433 3445788
Q ss_pred eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCC-CcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIG-APRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.+.++.+++.++..++ ++.||.|++||--+++++.++...|.+ .|.+..|..++++++++|.|..+++|.+.
T Consensus 263 ai~~V~Ys~t~~lYvT-aSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVT-ASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred ceeEEEecCCccEEEE-eccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence 9999999999987776 555899999999999999998777865 68999999999999999999999999874
No 50
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-32 Score=195.46 Aligned_cols=213 Identities=18% Similarity=0.329 Sum_probs=171.7
Q ss_pred ceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceE----EeeeccceeeeccceeeEEeCC-CCCeEEEE
Q 040370 10 KRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQC----YLSANVPEISVNGAINQVRYSS-TGGMYVTA 83 (228)
Q Consensus 10 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~ 83 (228)
.+.+++.+|..+-.+++|++ ..-.|++|+.|+.|++||+..... +.......+| ...|..++|++ +...|+++
T Consensus 168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h-~~~VeDV~~h~~h~~lF~sv 246 (422)
T KOG0264|consen 168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGH-EDVVEDVAWHPLHEDLFGSV 246 (422)
T ss_pred CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecC-Ccceehhhccccchhhheee
Confidence 44568889999889999999 456889999999999999986543 2222233344 88999999999 56689999
Q ss_pred ecCCeEEEEeCCC--CceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCe-eEEEEecceeeeeeeEE
Q 040370 84 SKDGAIRLWDGVS--ANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGR-LVKQYLGATHTQLRFQA 159 (228)
Q Consensus 84 ~~dg~v~iwd~~~--~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~ 159 (228)
+.|+.+.|||+++ .+.......| ..++.|++|+| ++..||+|+.|++|++||+|+.+ ++..+.+ |...+..+
T Consensus 247 ~dd~~L~iwD~R~~~~~~~~~~~ah--~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~--H~dev~~V 322 (422)
T KOG0264|consen 247 GDDGKLMIWDTRSNTSKPSHSVKAH--SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG--HEDEVFQV 322 (422)
T ss_pred cCCCeEEEEEcCCCCCCCccccccc--CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC--CCcceEEE
Confidence 9999999999995 4444444444 88999999999 67789999999999999999864 4566665 88899999
Q ss_pred EECCCCcEEEEeeCCCCeEEEEEcCCccee-------------EEeecCCCCCcEEEEeCCCCc-EEEEecCCCCEEEee
Q 040370 160 VFNDTEEFVLSIDEPSNEIVIWDALTAEKV-------------AKWSSNHIGAPRWIEHSPAEA-AFITCGTDRSVRFWK 225 (228)
Q Consensus 160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~-------------~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd 225 (228)
.|+|....++++++.|+.+.+||+..-... .-...+|...|..+.|+|+.. .+++.++|+.+.||+
T Consensus 323 ~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 323 EWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred EeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 999999999888888999999998642211 122368999999999999665 677889999999998
Q ss_pred ec
Q 040370 226 EI 227 (228)
Q Consensus 226 ~~ 227 (228)
..
T Consensus 403 ~s 404 (422)
T KOG0264|consen 403 MA 404 (422)
T ss_pred cc
Confidence 63
No 51
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=7e-32 Score=188.66 Aligned_cols=217 Identities=17% Similarity=0.287 Sum_probs=175.0
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCC---CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCC
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSG---DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG 77 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 77 (228)
|||.. .+....+.+|.++|.+++|.... ..|++++.|.++++|..+.++...........|...|.++...++|
T Consensus 129 iWd~~---Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg 205 (423)
T KOG0313|consen 129 IWDLK---GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG 205 (423)
T ss_pred EEecC---CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC
Confidence 35554 66778888999999999886533 3599999999999999998875544333222449999999999999
Q ss_pred CeEEEEecCCeEEEEeCCC-------------------------CceeeEEecccccceeEEEEECCCCCEEEEeeCCCe
Q 040370 78 GMYVTASKDGAIRLWDGVS-------------------------ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDST 132 (228)
Q Consensus 78 ~~l~~~~~dg~v~iwd~~~-------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 132 (228)
..+++|+.|..+.+|+..+ +.++..+.+| ..+|.++.|++ ...+++++.|.+
T Consensus 206 tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH--t~~Vs~V~w~d-~~v~yS~SwDHT 282 (423)
T KOG0313|consen 206 TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH--TEPVSSVVWSD-ATVIYSVSWDHT 282 (423)
T ss_pred CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc--ccceeeEEEcC-CCceEeecccce
Confidence 9999999999999999321 1233344444 78999999998 678999999999
Q ss_pred EEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc--eeEEeecCCCCCcEEEEeCC-CC
Q 040370 133 VKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE--KVAKWSSNHIGAPRWIEHSP-AE 209 (228)
Q Consensus 133 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~-~~ 209 (228)
|+.||+.++.....+.. +....++...|....++++++ |..+++||.|++. .+.....+|.+.|.++.|+| +.
T Consensus 283 Ik~WDletg~~~~~~~~---~ksl~~i~~~~~~~Ll~~gss-dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~ 358 (423)
T KOG0313|consen 283 IKVWDLETGGLKSTLTT---NKSLNCISYSPLSKLLASGSS-DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNE 358 (423)
T ss_pred EEEEEeecccceeeeec---CcceeEeecccccceeeecCC-CCceeecCCCCCCCceeEEeeecchhhhhheecCCCCc
Confidence 99999999998888764 556788889997777777655 8999999998764 34444479999999999999 56
Q ss_pred cEEEEecCCCCEEEeeec
Q 040370 210 AAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 210 ~~l~s~~~dg~i~vwd~~ 227 (228)
.+|++++.|+++++||++
T Consensus 359 ~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 359 FQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred eEEEEEecCCeEEEEEec
Confidence 689999999999999986
No 52
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.3e-32 Score=191.03 Aligned_cols=203 Identities=17% Similarity=0.312 Sum_probs=172.8
Q ss_pred EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce-----EE-----------------eeeccceeeeccceeeEE
Q 040370 15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ-----CY-----------------LSANVPEISVNGAINQVR 72 (228)
Q Consensus 15 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~-----~~-----------------~~~~~~~~~~~~~i~~~~ 72 (228)
..+|...|-+++..+++..+++|+.|.+|.+|+.+... .. ...... ..|..+|.++.
T Consensus 189 ~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl-~GHt~~Vs~V~ 267 (423)
T KOG0313|consen 189 CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL-EGHTEPVSSVV 267 (423)
T ss_pred hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe-cccccceeeEE
Confidence 34999999999999999999999999999999932210 00 011112 23489999999
Q ss_pred eCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe---eEEEEec
Q 040370 73 YSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR---LVKQYLG 149 (228)
Q Consensus 73 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~---~~~~~~~ 149 (228)
|++ ...+++++.|.+|+.||+.++.....+.. ...++++..+|..++|++|+.|..+++||.+++. ..+++.+
T Consensus 268 w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~---~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g 343 (423)
T KOG0313|consen 268 WSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT---NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIG 343 (423)
T ss_pred EcC-CCceEeecccceEEEEEeecccceeeeec---CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeec
Confidence 997 66899999999999999999999988887 6689999999999999999999999999999763 2345555
Q ss_pred ceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc-eeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 150 ATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE-KVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
|...+..+.|+|...+++++++.|+++++||+|+.+ ++..+ .+|...|.++.|. ++.++++||.|..|+++.-
T Consensus 344 --H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI-~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 344 --HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI-AGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred --chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee-ccCCceEEEEecc-CCceEEeccCcceEEEecc
Confidence 777999999999999999999999999999999988 66666 7999999999997 5668999999999999863
No 53
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-31 Score=177.01 Aligned_cols=206 Identities=14% Similarity=0.189 Sum_probs=181.4
Q ss_pred eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370 12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL 91 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 91 (228)
++.+.+|..+++.+.|+.+|++|.+++.|....||-..+|+.+-.+.. | .+.|.|++.+-+.+.+++|+.|.++++
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~G---H-tGavW~~Did~~s~~liTGSAD~t~kL 78 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDG---H-TGAVWCCDIDWDSKHLITGSADQTAKL 78 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecC---C-CceEEEEEecCCcceeeeccccceeEE
Confidence 355678999999999999999999999999999999989998777664 3 899999999999999999999999999
Q ss_pred EeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-----CCeEEEEEccC-------CeeEEEEecceeeeeeeEE
Q 040370 92 WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-----DSTVKLWEVSS-------GRLVKQYLGATHTQLRFQA 159 (228)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~~wd~~~-------~~~~~~~~~~~~~~~~~~~ 159 (228)
||+++|+.+..++. ..+|..+.|++++++++.... .+.|.++|++. .++...+.. +...+..+
T Consensus 79 WDv~tGk~la~~k~---~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t--~~skit~a 153 (327)
T KOG0643|consen 79 WDVETGKQLATWKT---NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT--PDSKITSA 153 (327)
T ss_pred EEcCCCcEEEEeec---CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC--Cccceeee
Confidence 99999999999987 779999999999998877654 35799999983 334555544 56788899
Q ss_pred EECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 160 VFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.|.|-+++++++.. ||.|.+||.++++........|...|+.++++|+..+++|++.|.+-++||..
T Consensus 154 ~Wg~l~~~ii~Ghe-~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~ 220 (327)
T KOG0643|consen 154 LWGPLGETIIAGHE-DGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVR 220 (327)
T ss_pred eecccCCEEEEecC-CCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecc
Confidence 99999999999666 89999999999988777667899999999999999999999999999999964
No 54
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-31 Score=181.54 Aligned_cols=209 Identities=17% Similarity=0.287 Sum_probs=166.3
Q ss_pred cccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC--eEEEEe
Q 040370 7 ATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG--MYVTAS 84 (228)
Q Consensus 7 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~ 84 (228)
+...+.+.+..|.++|++++. ++.++|+|+.|-+|+|||+.+......+. +|.+.|+++.|.+.-. .|++|+
T Consensus 31 ~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll----~HagsitaL~F~~~~S~shLlS~s 104 (362)
T KOG0294|consen 31 PTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL----SHAGSITALKFYPPLSKSHLLSGS 104 (362)
T ss_pred eeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee----ccccceEEEEecCCcchhheeeec
Confidence 334556777789999999999 69999999999999999999876554443 3388999999998654 899999
Q ss_pred cCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECC-
Q 040370 85 KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFND- 163 (228)
Q Consensus 85 ~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~- 163 (228)
.||.|.+|+......+..++.| ...|+.++.+|.+++.++.+.|+.++.||+-.|+.-....... ....+.|+|
T Consensus 105 dDG~i~iw~~~~W~~~~slK~H--~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---~at~v~w~~~ 179 (362)
T KOG0294|consen 105 DDGHIIIWRVGSWELLKSLKAH--KGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---KATLVSWSPQ 179 (362)
T ss_pred CCCcEEEEEcCCeEEeeeeccc--ccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---cceeeEEcCC
Confidence 9999999999999999999987 5569999999999999999999999999998776433322110 001122222
Q ss_pred --------------------------------------CCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEe
Q 040370 164 --------------------------------------TEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEH 205 (228)
Q Consensus 164 --------------------------------------~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 205 (228)
++.++++++. |+.|.+||.....+...+ .+|...|-++.+
T Consensus 180 Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d-~~~i~~~D~ds~~~~~~~-~AH~~RVK~i~~ 257 (362)
T KOG0294|consen 180 GDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGD-NEWISLKDTDSDTPLTEF-LAHENRVKDIAS 257 (362)
T ss_pred CCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecC-CceEEEeccCCCccceee-ecchhheeeeEE
Confidence 3444555444 799999998887777777 799999999984
Q ss_pred --CCCCcEEEEecCCCCEEEeeecC
Q 040370 206 --SPAEAAFITCGTDRSVRFWKEIL 228 (228)
Q Consensus 206 --~~~~~~l~s~~~dg~i~vwd~~l 228 (228)
.|++.+|+|+|.||.|++||+.|
T Consensus 258 ~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 258 YTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred EecCCceEEEEeccCceEEEEEccc
Confidence 46788999999999999999865
No 55
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-31 Score=197.87 Aligned_cols=204 Identities=18% Similarity=0.303 Sum_probs=186.6
Q ss_pred EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC
Q 040370 15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG 94 (228)
Q Consensus 15 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~ 94 (228)
+..++..|.++.++|....++++-.+|.|.|||.++...+..+... .-+|++..|-+..+.+++|+.|..|++|+.
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~----~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVS----EVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeec----ccchhhheeeeccceEEEecCCceEEEEec
Confidence 3458999999999999999999999999999999999888877765 678999999999999999999999999999
Q ss_pred CCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC-eeEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370 95 VSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG-RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE 173 (228)
Q Consensus 95 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
++++.+..+..| ...|.+++.+|...++++++.|-+|++||.+.. .+.+++++ |...+.+++|+|.....+++++
T Consensus 85 nt~ekV~~FeAH--~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG--H~HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 85 NTGEKVKTFEAH--SDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG--HEHYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred ccceeeEEeecc--ccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC--cceEEEEEEecCCCccceeeee
Confidence 999999999987 889999999999999999999999999999864 45677777 7778999999999999999999
Q ss_pred CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC--CCcEEEEecCCCCEEEeeec
Q 040370 174 PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP--AEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 174 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~ 227 (228)
-|++|++|.+.+..+..++ .+|...|+++.+-+ |..+|+||+.|.+|+|||..
T Consensus 161 LDrTVKVWslgs~~~nfTl-~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ 215 (794)
T KOG0276|consen 161 LDRTVKVWSLGSPHPNFTL-EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ 215 (794)
T ss_pred ccccEEEEEcCCCCCceee-eccccCcceEEeccCCCcceEEecCCCceEEEeecc
Confidence 9999999999999999998 69999999999987 45799999999999999953
No 56
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.7e-32 Score=193.70 Aligned_cols=199 Identities=19% Similarity=0.295 Sum_probs=168.5
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeEEEEeCC
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAIRLWDGV 95 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~ 95 (228)
.....|.+++|..||++||+|...|.|+|+|+++...+. ....| ..++..+.|+|+ +..+++|+.|+.+++||+.
T Consensus 66 rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR---~~~ah-~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s 141 (487)
T KOG0310|consen 66 RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR---QLYAH-QAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS 141 (487)
T ss_pred hhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH---HHhhc-cCceeEEEecccCCeEEEecCCCceEEEEEcC
Confidence 356789999999999999999999999999966532222 22333 889999999995 5578889999999999999
Q ss_pred CCceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCC-eeEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370 96 SANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSG-RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE 173 (228)
Q Consensus 96 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
+......+.+| ...|.+.+|+| ++..++||+.||.|++||++.. ..+..+. |..++..+.+-|.|..++++|+
T Consensus 142 ~a~v~~~l~~h--tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln---hg~pVe~vl~lpsgs~iasAgG 216 (487)
T KOG0310|consen 142 TAYVQAELSGH--TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN---HGCPVESVLALPSGSLIASAGG 216 (487)
T ss_pred CcEEEEEecCC--cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec---CCCceeeEEEcCCCCEEEEcCC
Confidence 88875566665 88999999999 5568999999999999999987 5555554 7888999999999999999887
Q ss_pred CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 174 PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 174 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
+.+++||+-+|.........|...|+|+.+..++..|+++|-|+.|++||+
T Consensus 217 --n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 217 --NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDT 267 (487)
T ss_pred --CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEc
Confidence 899999999777666654569999999999999999999999999999994
No 57
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.1e-31 Score=180.32 Aligned_cols=204 Identities=16% Similarity=0.299 Sum_probs=163.1
Q ss_pred ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCC-CeEEEEecCCe
Q 040370 10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG-GMYVTASKDGA 88 (228)
Q Consensus 10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~ 88 (228)
+....+.+|.+.|..+.|.+|++.+++++.|.+++.||.++|+.....+.. ..-|+++.-+.-| .++.+++.||+
T Consensus 81 eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h----~~~vNs~~p~rrg~~lv~SgsdD~t 156 (338)
T KOG0265|consen 81 ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGH----TSFVNSLDPSRRGPQLVCSGSDDGT 156 (338)
T ss_pred cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccc----cceeeecCccccCCeEEEecCCCce
Confidence 344455699999999999999999999999999999999999987766643 7778888754434 46778999999
Q ss_pred EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEE-------
Q 040370 89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVF------- 161 (228)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~------- 161 (228)
+++||+++...++.+.. +.+++++.|..++..+.+|+-|+.|++||++.+.....+.+ |...++.+..
T Consensus 157 ~kl~D~R~k~~~~t~~~---kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsG--h~DtIt~lsls~~gs~l 231 (338)
T KOG0265|consen 157 LKLWDIRKKEAIKTFEN---KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSG--HADTITGLSLSRYGSFL 231 (338)
T ss_pred EEEEeecccchhhcccc---ceeEEEEEecccccceeeccccCceeeeccccCcceEEeec--ccCceeeEEeccCCCcc
Confidence 99999999998888866 66899999999999999999999999999998887777766 4444444444
Q ss_pred -------------------------------------------CCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCC
Q 040370 162 -------------------------------------------NDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIG 198 (228)
Q Consensus 162 -------------------------------------------~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 198 (228)
+|++..+-++.. |..+++||......+..+ .+|.+
T Consensus 232 lsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~-dr~vyvwd~~~r~~lykl-pGh~g 309 (338)
T KOG0265|consen 232 LSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSA-DRFVYVWDTTSRRILYKL-PGHYG 309 (338)
T ss_pred ccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccc-cceEEEeecccccEEEEc-CCcce
Confidence 444444444322 556666665554555555 79999
Q ss_pred CcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370 199 APRWIEHSPAEAAFITCGTDRSVRFW 224 (228)
Q Consensus 199 ~v~~~~~~~~~~~l~s~~~dg~i~vw 224 (228)
.|++++|+|....|.+++.|.+|.+=
T Consensus 310 svn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 310 SVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred eEEEeeecCCCcEEEEeccCceeEee
Confidence 99999999999999999999998763
No 58
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-30 Score=175.23 Aligned_cols=207 Identities=16% Similarity=0.234 Sum_probs=174.9
Q ss_pred cceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec---
Q 040370 9 AKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK--- 85 (228)
Q Consensus 9 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--- 85 (228)
..++-+..+|++.|.|++.+-+.+++++|+.|.++++||+++|+.+..... ..+|..+.|+++|++++.+..
T Consensus 42 GerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-----~~~Vk~~~F~~~gn~~l~~tD~~m 116 (327)
T KOG0643|consen 42 GERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-----NSPVKRVDFSFGGNLILASTDKQM 116 (327)
T ss_pred CceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-----CCeeEEEeeccCCcEEEEEehhhc
Confidence 455666779999999999999999999999999999999999998887765 678999999999998877754
Q ss_pred --CCeEEEEeCC-------CCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeee
Q 040370 86 --DGAIRLWDGV-------SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLR 156 (228)
Q Consensus 86 --dg~v~iwd~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 156 (228)
.+.|.++|++ +.++...+..+ ...++.+-|.|-+++|++|..||.|..||+++++....-. ..|...+
T Consensus 117 g~~~~v~~fdi~~~~~~~~s~ep~~kI~t~--~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~-~~h~~~I 193 (327)
T KOG0643|consen 117 GYTCFVSVFDIRDDSSDIDSEEPYLKIPTP--DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSD-EEHSSKI 193 (327)
T ss_pred CcceEEEEEEccCChhhhcccCceEEecCC--ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeech-hhhcccc
Confidence 4789999998 34556677665 6789999999999999999999999999999986544332 2266789
Q ss_pred eEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe--------------------------------------------
Q 040370 157 FQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW-------------------------------------------- 192 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-------------------------------------------- 192 (228)
..+.++++..++++++. |.+-++||+++.+.+.++
T Consensus 194 nd~q~s~d~T~FiT~s~-Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFy 272 (327)
T KOG0643|consen 194 NDLQFSRDRTYFITGSK-DTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFY 272 (327)
T ss_pred ccccccCCcceEEeccc-CccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHH
Confidence 99999999999988555 899999998776544333
Q ss_pred ----------ecCCCCCcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370 193 ----------SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224 (228)
Q Consensus 193 ----------~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 224 (228)
..+|-++|++++|+|+|+..++|++||.|++.
T Consensus 273 h~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 273 HLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred HHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 24799999999999999999999999999985
No 59
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-31 Score=201.00 Aligned_cols=205 Identities=16% Similarity=0.327 Sum_probs=180.0
Q ss_pred eecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceE--------EeeeccceeeeccceeeEEeCCCCCeEEEEecCC
Q 040370 16 IQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQC--------YLSANVPEISVNGAINQVRYSSTGGMYVTASKDG 87 (228)
Q Consensus 16 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 87 (228)
..|.+.|.+++.+||+..+++|+.|.+|++||..-... +.............|.|+.+|||+++|+.+--|.
T Consensus 451 ~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn 530 (888)
T KOG0306|consen 451 RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDN 530 (888)
T ss_pred hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccC
Confidence 37999999999999999999999999999999753221 1111111122367899999999999999999999
Q ss_pred eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370 88 AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF 167 (228)
Q Consensus 88 ~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (228)
+|+||-+.+.+....+.+| .-||.|+..+||++.++||+.|++|++|-+.-|.+-..+.. |...+.++.|-|...+
T Consensus 531 TVkVyflDtlKFflsLYGH--kLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA--HdDSvm~V~F~P~~~~ 606 (888)
T KOG0306|consen 531 TVKVYFLDTLKFFLSLYGH--KLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA--HDDSVMSVQFLPKTHL 606 (888)
T ss_pred eEEEEEecceeeeeeeccc--ccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc--ccCceeEEEEccccee
Confidence 9999999999988888887 88999999999999999999999999999999999888876 7788999999997777
Q ss_pred EEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 168 VLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 168 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
++++|. |+.|+-||-...+.+..+ .+|...|++++.+|+|.+++++|.|.+|++|..
T Consensus 607 FFt~gK-D~kvKqWDg~kFe~iq~L-~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 607 FFTCGK-DGKVKQWDGEKFEEIQKL-DGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred EEEecC-cceEEeechhhhhhheee-ccchheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence 777555 899999999999999988 799999999999999999999999999999974
No 60
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.5e-30 Score=186.66 Aligned_cols=214 Identities=21% Similarity=0.337 Sum_probs=185.9
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
|||..+++.++.+.+ |..+-..+.|- +...|++++.|+.|+|+.+....++.++.. |.++|.++.|+|.+.+|
T Consensus 302 lwd~~~g~~~q~f~~--~s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~G----H~g~V~alk~n~tg~LL 374 (524)
T KOG0273|consen 302 LWDAHTGTVKQQFEF--HSAPALDVDWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIG----HHGEVNALKWNPTGSLL 374 (524)
T ss_pred EEeccCceEEEeeee--ccCCccceEEe-cCceEeecCCCceEEEEEecCCCcceeeec----ccCceEEEEECCCCceE
Confidence 577776666666555 77777788886 556789999999999999988777766653 38999999999999999
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCC---------CEEEEeeCCCeEEEEEccCCeeEEEEecce
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQ---------RFVLSCGKDSTVKLWEVSSGRLVKQYLGAT 151 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 151 (228)
++++.|++++||+.........+..| ...|..+.|+|.+ ..+++++.|++|++||+..+.++..+..
T Consensus 375 aS~SdD~TlkiWs~~~~~~~~~l~~H--skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k-- 450 (524)
T KOG0273|consen 375 ASCSDDGTLKIWSMGQSNSVHDLQAH--SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK-- 450 (524)
T ss_pred EEecCCCeeEeeecCCCcchhhhhhh--ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc--
Confidence 99999999999999888888888776 7789999999865 3699999999999999999999999876
Q ss_pred eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeecC
Q 040370 152 HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL 228 (228)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~l 228 (228)
|..++++++|+|+++|++++.. ||.|.+|+.++++..... ...+.|..++|+.+|.+|..+-.|+.+++-|+++
T Consensus 451 H~~pVysvafS~~g~ylAsGs~-dg~V~iws~~~~~l~~s~--~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr~ 524 (524)
T KOG0273|consen 451 HQEPVYSVAFSPNGRYLASGSL-DGCVHIWSTKTGKLVKSY--QGTGGIFELCWNAAGDKLGACASDGSVCVLDLRK 524 (524)
T ss_pred CCCceEEEEecCCCcEEEecCC-CCeeEeccccchheeEee--cCCCeEEEEEEcCCCCEEEEEecCCCceEEEecC
Confidence 7889999999999999998555 899999999999999887 4566799999999999999999999999999874
No 61
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.9e-30 Score=186.85 Aligned_cols=207 Identities=20% Similarity=0.363 Sum_probs=172.7
Q ss_pred eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC----C
Q 040370 12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD----G 87 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g 87 (228)
.....+|..+++-..|+|.|.++|+|...|.|+|||....+.+...... ...++|..++|+++++.+++.++. |
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~--v~aG~I~Di~Wd~ds~RI~avGEGrerfg 129 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQ--VLAGPIKDISWDFDSKRIAAVGEGRERFG 129 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeee--ecccccccceeCCCCcEEEEEecCcccee
Confidence 4445579999999999999999999999999999998775543332222 127899999999999998887653 3
Q ss_pred eEEEEeCCCCceeeEEecccccceeEEEEECCCCC-EEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCc
Q 040370 88 AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR-FVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEE 166 (228)
Q Consensus 88 ~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (228)
.+.+|| +|...-.+.+| ...|+++.|-|... ++++|++|+.|.+|+-.--+...++.. |...+.++.|+|+|.
T Consensus 130 ~~F~~D--SG~SvGei~Gh--Sr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~--HskFV~~VRysPDG~ 203 (603)
T KOG0318|consen 130 HVFLWD--SGNSVGEITGH--SRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFRE--HSKFVNCVRYSPDGS 203 (603)
T ss_pred EEEEec--CCCccceeecc--ceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccc--cccceeeEEECCCCC
Confidence 456665 67888888887 78999999999655 699999999999998544444444433 778999999999999
Q ss_pred EEEEeeCCCCeEEEEEcCCcceeEEee--cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 167 FVLSIDEPSNEIVIWDALTAEKVAKWS--SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 167 ~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.++++++ ||.+.+||-++++.+..+. .+|.+.|.+++|+||+..++|++.|.+++|||+.
T Consensus 204 ~Fat~gs-Dgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs 265 (603)
T KOG0318|consen 204 RFATAGS-DGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVS 265 (603)
T ss_pred eEEEecC-CccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEee
Confidence 9999888 8999999999999999883 3899999999999999999999999999999974
No 62
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=190.11 Aligned_cols=206 Identities=22% Similarity=0.415 Sum_probs=179.4
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccc----eeeeccceeeEEeCCCCCeEEEEecCCeEEEE
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP----EISVNGAINQVRYSSTGGMYVTASKDGAIRLW 92 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw 92 (228)
+..+.+-|..|+|||++|++|+.||.|.+||..+|+..+.++.. ..-+..+|.|+.|+.|...+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 45677899999999999999999999999999998865443321 12237899999999999999999999999999
Q ss_pred eCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370 93 DGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID 172 (228)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
.+++|.+++.+...| ...|+++.|+.|+..+++++.|.++++--+++|+.+..+.+ |...+..+.|.++|.++++++
T Consensus 291 ri~tG~ClRrFdrAH-tkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrG--HsSyvn~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAH-TKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRG--HSSYVNEATFTDDGHHIISAS 367 (508)
T ss_pred EEecchHHHHhhhhh-ccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcC--ccccccceEEcCCCCeEEEec
Confidence 999999999998665 77899999999999999999999999999999999999998 788999999999999999977
Q ss_pred CCCCeEEEEEcCCcceeEEeec-CCCCCcEEEEeCC-CCcEEEEecCCCCEEEeee
Q 040370 173 EPSNEIVIWDALTAEKVAKWSS-NHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 173 ~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~ 226 (228)
+ ||+|++|+.++.+++.++.. +...+|+++..-| +...++.|...++|.+-++
T Consensus 368 s-DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~ 422 (508)
T KOG0275|consen 368 S-DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM 422 (508)
T ss_pred C-CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec
Confidence 7 89999999999999988853 3455788888877 5567888888888887654
No 63
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6e-33 Score=191.38 Aligned_cols=218 Identities=17% Similarity=0.339 Sum_probs=186.9
Q ss_pred CCcCCccccceeE------EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeC
Q 040370 1 FFDFSKATAKRAF------RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYS 74 (228)
Q Consensus 1 iwd~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 74 (228)
+||+..+..++-+ .+.-+..+|.|+.|+.|...+|+|+.||.|++|.+++|.++..+... |...|+|+.|+
T Consensus 239 VWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrA---HtkGvt~l~FS 315 (508)
T KOG0275|consen 239 VWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRA---HTKGVTCLSFS 315 (508)
T ss_pred eehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhh---hccCeeEEEEc
Confidence 5888776654433 33457899999999999999999999999999999999988766532 28899999999
Q ss_pred CCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecc----
Q 040370 75 STGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA---- 150 (228)
Q Consensus 75 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~---- 150 (228)
.|+..+++++.|.++++.-+.+|+.++.+.+| ...|+...|.++|.++++++.||+|++|+.++.+++.+++..
T Consensus 316 rD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH--sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~ 393 (508)
T KOG0275|consen 316 RDNSQILSASFDQTVRIHGLKSGKCLKEFRGH--SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDY 393 (508)
T ss_pred cCcchhhcccccceEEEeccccchhHHHhcCc--cccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcc
Confidence 99999999999999999999999999999987 789999999999999999999999999999876655443211
Q ss_pred -----------------------------------------eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCccee
Q 040370 151 -----------------------------------------THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKV 189 (228)
Q Consensus 151 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~ 189 (228)
.......+++.+|.|.++.+.|. |+.++.|...+|+..
T Consensus 394 ~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigE-D~vlYCF~~~sG~LE 472 (508)
T KOG0275|consen 394 PVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGE-DGVLYCFSVLSGKLE 472 (508)
T ss_pred cceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEcc-CcEEEEEEeecCcee
Confidence 01222345677899999999887 799999999999988
Q ss_pred EEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 190 AKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 190 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
..+ .-|...+..++-+|..+.|++-++||.+++|.
T Consensus 473 ~tl-~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 473 RTL-PVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eee-ecccccccccccCcccchhhhhcccchhhhcC
Confidence 887 68999999999999999999999999999996
No 64
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2.2e-30 Score=171.04 Aligned_cols=211 Identities=16% Similarity=0.244 Sum_probs=177.2
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
+|+...+. .+.+..+|..+|..++.+.|+..|++|+.|..+.+||+++|+....+..+ .+.|+.++|+.+...+
T Consensus 43 LWNp~rg~--liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH----~aqVNtV~fNeesSVv 116 (307)
T KOG0316|consen 43 LWNPLRGA--LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGH----LAQVNTVRFNEESSVV 116 (307)
T ss_pred eecccccc--eeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccc----cceeeEEEecCcceEE
Confidence 35444332 33445589999999999999999999999999999999999988777643 7889999999999999
Q ss_pred EEEecCCeEEEEeCCCC--ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeE
Q 040370 81 VTASKDGAIRLWDGVSA--NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQ 158 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 158 (228)
++|+.|.++++||.++. ++++.+... ...|.++..+ +..+++|+.||+++.||++.|+....+. ..++.+
T Consensus 117 ~SgsfD~s~r~wDCRS~s~ePiQildea--~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~----g~pit~ 188 (307)
T KOG0316|consen 117 ASGSFDSSVRLWDCRSRSFEPIQILDEA--KDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF----GHPITS 188 (307)
T ss_pred EeccccceeEEEEcccCCCCccchhhhh--cCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc----CCccee
Confidence 99999999999999865 566666554 6788888876 5679999999999999999998876664 456889
Q ss_pred EEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEE--EEeCCCCcEEEEecCCCCEEEeeec
Q 040370 159 AVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRW--IEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+.|+++++..+++.- |+++++.|-.+|+.+... .+|...-.. ++++.....+++|++||.|.+||+.
T Consensus 189 vs~s~d~nc~La~~l-~stlrLlDk~tGklL~sY-kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 189 VSFSKDGNCSLASSL-DSTLRLLDKETGKLLKSY-KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLV 257 (307)
T ss_pred EEecCCCCEEEEeec-cceeeecccchhHHHHHh-cccccceeeeeeeecccceeEEeccCCceEEEEEec
Confidence 999999999998766 799999999999999888 688765443 4566777899999999999999974
No 65
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.1e-30 Score=198.65 Aligned_cols=207 Identities=17% Similarity=0.227 Sum_probs=170.2
Q ss_pred ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCeEEEEecCCe
Q 040370 10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGMYVTASKDGA 88 (228)
Q Consensus 10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~ 88 (228)
++...+.+|.+.|..+.|+. .++|++++.|.+|++|++...+++..+. |...|+|++|+| |.++|++|+-||.
T Consensus 360 kP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-----HndfVTcVaFnPvDDryFiSGSLD~K 433 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-----HNDFVTCVAFNPVDDRYFISGSLDGK 433 (712)
T ss_pred cchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-----cCCeeEEEEecccCCCcEeecccccc
Confidence 45566779999999999995 5689999999999999999988877664 388999999999 8899999999999
Q ss_pred EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEeccee------eeeeeEEEEC
Q 040370 89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATH------TQLRFQAVFN 162 (228)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~------~~~~~~~~~~ 162 (228)
|+||++...+...-... ..-|++++|.|||++.+.|+.+|.+++|+.+..+.........+ ...++.+.|.
T Consensus 434 vRiWsI~d~~Vv~W~Dl---~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~ 510 (712)
T KOG0283|consen 434 VRLWSISDKKVVDWNDL---RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFF 510 (712)
T ss_pred eEEeecCcCeeEeehhh---hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEec
Confidence 99999987776655544 56899999999999999999999999999988776655432211 2368888888
Q ss_pred CCCcE-EEEeeCCCCeEEEEEcCCcceeEEeecCCC-CCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 163 DTEEF-VLSIDEPSNEIVIWDALTAEKVAKWSSNHI-GAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 163 ~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
|...- ++++ ++|..|+|||.+....+..+...+. ..-....|+.||++|+++++|..|.+|+.
T Consensus 511 p~~~~~vLVT-SnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 511 PGDPDEVLVT-SNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred CCCCCeEEEe-cCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 76653 4444 4489999999998888888743332 23456789999999999999999999995
No 66
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=1.6e-29 Score=192.40 Aligned_cols=203 Identities=15% Similarity=0.247 Sum_probs=158.2
Q ss_pred CCcCCcccc-----ceeEEEeecCcceEEEEEeCCC-CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeC
Q 040370 1 FFDFSKATA-----KRAFRVIQDTHNVRSVSFHPSG-DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYS 74 (228)
Q Consensus 1 iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 74 (228)
|||+..... .....+.+|...|.+++|+|++ ++|++|+.|+.|+|||+++++....+.. | ...|.+++|+
T Consensus 102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~---h-~~~V~sla~s 177 (493)
T PTZ00421 102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC---H-SDQITSLEWN 177 (493)
T ss_pred EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC---C-CCceEEEEEE
Confidence 577764321 2455667899999999999975 6999999999999999999876655432 2 7789999999
Q ss_pred CCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEee----CCCeEEEEEccCCeeEEEEecc
Q 040370 75 STGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCG----KDSTVKLWEVSSGRLVKQYLGA 150 (228)
Q Consensus 75 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~d~~i~~wd~~~~~~~~~~~~~ 150 (228)
|++++|++++.|+.|++||+++++.+..+..|. ......+.|.+++..+++++ .|+.|++||+++..........
T Consensus 178 pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~-~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~ 256 (493)
T PTZ00421 178 LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA-SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL 256 (493)
T ss_pred CCCCEEEEecCCCEEEEEECCCCcEEEEEecCC-CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc
Confidence 999999999999999999999999888887663 33445677888887777654 4789999999876543332222
Q ss_pred eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCC
Q 040370 151 THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPA 208 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 208 (228)
.....+....|++++..+++++..|+.|++||+++++........+..++..++|.|.
T Consensus 257 d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 257 DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 2334455667899999988887668999999999998877664556677888888884
No 67
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.7e-30 Score=195.24 Aligned_cols=200 Identities=15% Similarity=0.244 Sum_probs=162.1
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceE-----------------------Ee------------------
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQC-----------------------YL------------------ 55 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~-----------------------~~------------------ 55 (228)
.|.+.|.++.|++||+|||+|+.|+.|+||.+...+. ..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 7999999999999999999999999999998765000 00
Q ss_pred ----------------eeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC
Q 040370 56 ----------------SANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK 119 (228)
Q Consensus 56 ----------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~ 119 (228)
.+....+ |.+.|.++.|+. .++|++++.|.+|++|++...+++..|.- ...|+|++|+|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~G-Ht~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~H---ndfVTcVaFnP 419 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKG-HTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFSH---NDFVTCVAFNP 419 (712)
T ss_pred CccccCCCccccccccchhhhhc-cchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEec---CCeeEEEEecc
Confidence 0001113 388899999995 45899999999999999999999988853 78999999999
Q ss_pred -CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec----
Q 040370 120 -DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS---- 194 (228)
Q Consensus 120 -~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---- 194 (228)
|.+|+++|+-|+.++||++...+.+.-.. -...+++++|.|+|++.+++.. +|.+++|+....+.......
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~D---l~~lITAvcy~PdGk~avIGt~-~G~C~fY~t~~lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKKVVDWND---LRDLITAVCYSPDGKGAVIGTF-NGYCRFYDTEGLKLVSDFHIRLHN 495 (712)
T ss_pred cCCCcEeecccccceEEeecCcCeeEeehh---hhhhheeEEeccCCceEEEEEe-ccEEEEEEccCCeEEEeeeEeecc
Confidence 88999999999999999998766554333 3478999999999999999766 79999999887766554421
Q ss_pred ----CCCCCcEEEEeCCC-CcEEEEecCCCCEEEeee
Q 040370 195 ----NHIGAPRWIEHSPA-EAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 195 ----~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~ 226 (228)
.|. .|+.+.|.|. ...++..+.|..|+|+|.
T Consensus 496 ~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 496 KKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred CccccCc-eeeeeEecCCCCCeEEEecCCCceEEEec
Confidence 233 7999999983 345677789999999997
No 68
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=4.7e-30 Score=171.64 Aligned_cols=204 Identities=18% Similarity=0.264 Sum_probs=171.9
Q ss_pred EEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCeEEEEecCCeEEE
Q 040370 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGMYVTASKDGAIRL 91 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~i 91 (228)
.++.+|...|.+++|+.+|..|++|+.|+++.+|+++..+..... ...+| .+.|-.++|+| ....|++++.|..|++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~-~~~gh-~~svdql~w~~~~~d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKEL-VYRGH-TDSVDQLCWDPKHPDLFATASGDKTIRI 91 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhh-cccCC-CcchhhheeCCCCCcceEEecCCceEEE
Confidence 344578999999999999999999999999999999987543322 22334 77888999988 5678999999999999
Q ss_pred EeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370 92 WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI 171 (228)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
||++.+++...+... ..-..+.|+|+|++++.++.|..|.+.|.++.+.....+. ...+..+.|+.++..++.+
T Consensus 92 wd~r~~k~~~~i~~~---~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~---~~e~ne~~w~~~nd~Fflt 165 (313)
T KOG1407|consen 92 WDIRSGKCTARIETK---GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF---KFEVNEISWNNSNDLFFLT 165 (313)
T ss_pred EEeccCcEEEEeecc---CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc---cceeeeeeecCCCCEEEEe
Confidence 999999999888773 3345678999999999999999999999998877766553 3445567777777777766
Q ss_pred eCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 172 DEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 172 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
.+ .|.|.|......+++..+ .+|.....||.|+|+|++||+|+.|-.+.+||+
T Consensus 166 ~G-lG~v~ILsypsLkpv~si-~AH~snCicI~f~p~GryfA~GsADAlvSLWD~ 218 (313)
T KOG1407|consen 166 NG-LGCVEILSYPSLKPVQSI-KAHPSNCICIEFDPDGRYFATGSADALVSLWDV 218 (313)
T ss_pred cC-CceEEEEecccccccccc-ccCCcceEEEEECCCCceEeeccccceeeccCh
Confidence 66 499999999999999888 799999999999999999999999999999996
No 69
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.2e-30 Score=198.56 Aligned_cols=202 Identities=20% Similarity=0.444 Sum_probs=179.4
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS 96 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 96 (228)
..+..|..++|+|....++++-..|.|++||.+-+.++..+.. | .++|..++|+|++.+|++|+.|-.|++|+..+
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFde---H-dGpVRgv~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDE---H-DGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhc---c-CCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence 3467899999999999999999999999999998887666553 3 89999999999999999999999999999999
Q ss_pred CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370 97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN 176 (228)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 176 (228)
.+++.++.+| -..|..+.|++.-.+++++|.|.+|+||+..+.+++..+.+ |...+.+..|+|....+++++- |.
T Consensus 83 rrclftL~GH--lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltG--HnHYVMcAqFhptEDlIVSaSL-DQ 157 (1202)
T KOG0292|consen 83 RRCLFTLLGH--LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTG--HNHYVMCAQFHPTEDLIVSASL-DQ 157 (1202)
T ss_pred ceehhhhccc--cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEec--CceEEEeeccCCccceEEEecc-cc
Confidence 9999999987 78999999999999999999999999999999999999998 6778999999999888887555 89
Q ss_pred eEEEEEcCCcc----------------------------eeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 177 EIVIWDALTAE----------------------------KVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 177 ~i~i~d~~~~~----------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+||+||+...+ .+.....+|...|+.++|+|.-.++++|+.|..|++|...
T Consensus 158 TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmn 236 (1202)
T KOG0292|consen 158 TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN 236 (1202)
T ss_pred eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEec
Confidence 99999984211 1222346899999999999999999999999999999863
No 70
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=5.9e-30 Score=181.98 Aligned_cols=208 Identities=19% Similarity=0.251 Sum_probs=181.8
Q ss_pred eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEE
Q 040370 11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIR 90 (228)
Q Consensus 11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 90 (228)
....+.+|...|+.+.|+|+...+++++.|..|+||............ .|.++|+.+..+|.|.||++++.||+..
T Consensus 253 ~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~----~h~~~V~~ls~h~tgeYllsAs~d~~w~ 328 (506)
T KOG0289|consen 253 ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSR----PHEEPVTGLSLHPTGEYLLSASNDGTWA 328 (506)
T ss_pred hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccc----cccccceeeeeccCCcEEEEecCCceEE
Confidence 344556899999999999999999999999999999987765433333 2388999999999999999999999999
Q ss_pred EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370 91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS 170 (228)
Q Consensus 91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
+.|++++..+...........+++.+|+|||..|.+|..|+.+++||+.++..+..|.+ |...+..+.|+.+|-++++
T Consensus 329 Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg--ht~~vk~i~FsENGY~Lat 406 (506)
T KOG0289|consen 329 FSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG--HTGPVKAISFSENGYWLAT 406 (506)
T ss_pred EEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC--CCCceeEEEeccCceEEEE
Confidence 99999999887776643457799999999999999999999999999999998888877 8899999999999999888
Q ss_pred eeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 171 IDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 171 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
++. |+.|++||+|..+...++......++.++.|.+.|.+|+.+|.|=.|.+++
T Consensus 407 ~ad-d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 407 AAD-DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred Eec-CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 766 789999999999988888656666899999999999999998887777665
No 71
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=2.2e-30 Score=184.71 Aligned_cols=213 Identities=18% Similarity=0.262 Sum_probs=167.2
Q ss_pred eEEEeecCcceEEEEEeCC-CCEEEEecCCCeEEEEEcccceEEeeec-------cceeeeccceeeEEeCCC-CCeEEE
Q 040370 12 AFRVIQDTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQCYLSAN-------VPEISVNGAINQVRYSST-GGMYVT 82 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~-------~~~~~~~~~i~~~~~~~~-~~~l~~ 82 (228)
....+.|.+.|+.+.+-|+ ...+|+++..+.|.|||..+........ ...+| .+.-.++.|++. .-.+++
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH-~~eg~glsWn~~~~g~Lls 195 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGH-EKEGYGLSWNRQQEGTLLS 195 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEee-cccccccccccccceeEee
Confidence 3344679999999999995 5566778889999999987643222211 22344 555678999985 448999
Q ss_pred EecCCeEEEEeCCCCce-------eeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeee
Q 040370 83 ASKDGAIRLWDGVSANC-------VRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQ 154 (228)
Q Consensus 83 ~~~dg~v~iwd~~~~~~-------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 154 (228)
++.|+.|++||+..... ...+..| ...|..++|++ +...+++++.|+.+.|||+|++..........|..
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h--~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~ 273 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGH--EDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA 273 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecC--CcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence 99999999999976432 2333333 88999999999 66789999999999999999532222222344888
Q ss_pred eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeeec
Q 040370 155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~ 227 (228)
.+.++.|+|-+.+++++++.|++|.+||+|+.........+|...|.++.|+| ....|+++|.|+++.+||+.
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred ceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 99999999999999999999999999999997765544489999999999999 46789999999999999974
No 72
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=6.2e-32 Score=187.71 Aligned_cols=209 Identities=20% Similarity=0.348 Sum_probs=174.0
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
|||++++. ....+++|.+.|..+.|+ +.++++++.|.++.+||+.....+.......+| ...|+.+.|+ .+++
T Consensus 261 vWDv~tge--~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGH-rAaVNvVdfd--~kyI 333 (499)
T KOG0281|consen 261 VWDVNTGE--PLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVDFD--DKYI 333 (499)
T ss_pred EEeccCCc--hhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhh-hhheeeeccc--cceE
Confidence 58888544 445567899999999995 679999999999999999887655444555555 8999999996 5699
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV 160 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
++++.|.+|++|++.+++.++++.+| ...|.|+.+ .++++++|+.|.+|++||+..|.+++.+++ |+..+.++.
T Consensus 334 VsASgDRTikvW~~st~efvRtl~gH--kRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeG--HEeLvRciR 407 (499)
T KOG0281|consen 334 VSASGDRTIKVWSTSTCEFVRTLNGH--KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEG--HEELVRCIR 407 (499)
T ss_pred EEecCCceEEEEeccceeeehhhhcc--cccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhc--hHHhhhhee
Confidence 99999999999999999999999887 677888876 488999999999999999999999999988 777788888
Q ss_pred ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe--------ecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW--------SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
|. .+.+++++. ||.|++||+..+...... ...|.+.|..+.| |...+++++.|.+|.|||..
T Consensus 408 Fd--~krIVSGaY-DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 408 FD--NKRIVSGAY-DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFL 477 (499)
T ss_pred ec--Cceeeeccc-cceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcC
Confidence 74 556666555 899999999877544221 1478999999999 56789999999999999963
No 73
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.2e-31 Score=199.45 Aligned_cols=215 Identities=15% Similarity=0.307 Sum_probs=175.5
Q ss_pred CCcCCcccc-ceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CC
Q 040370 1 FFDFSKATA-KRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TG 77 (228)
Q Consensus 1 iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 77 (228)
+||++.... +....+..|...+++++|++ ...+|++|++||+|++||++..+....+... ...|..++|+| .+
T Consensus 114 vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~n----SESiRDV~fsp~~~ 189 (839)
T KOG0269|consen 114 VWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSN----SESIRDVKFSPGYG 189 (839)
T ss_pred EEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccccc----chhhhceeeccCCC
Confidence 588887432 33345558999999999999 6678899999999999999987766655542 77899999999 57
Q ss_pred CeEEEEecCCeEEEEeCCCCc-eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeee
Q 040370 78 GMYVTASKDGAIRLWDGVSAN-CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLR 156 (228)
Q Consensus 78 ~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 156 (228)
..|+++...|.+++||++... ....+..| .++|.++.|+|++.+||||+.|+.|+|||..+++.......+ ...++
T Consensus 190 ~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH--~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv 266 (839)
T KOG0269|consen 190 NKFASIHDSGYLQLWDLRQPDRCEKKLTAH--NGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPV 266 (839)
T ss_pred ceEEEecCCceEEEeeccCchhHHHHhhcc--cCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-eccee
Confidence 899999999999999999764 44555555 889999999999999999999999999999865543322211 45678
Q ss_pred eEEEECCCCcEEEEeeC--CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEE
Q 040370 157 FQAVFNDTEEFVLSIDE--PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVR 222 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~ 222 (228)
..+.|-|...+.+++++ .|-.|+|||++..-.+......|...++.++|.. +...|.+++.||+|.
T Consensus 267 ~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 267 GRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred eeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 89999999988877654 4789999999998877777689999999999966 567899999999764
No 74
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=9.2e-30 Score=173.26 Aligned_cols=204 Identities=19% Similarity=0.359 Sum_probs=172.8
Q ss_pred ecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccce------------EEeeeccceeeeccceeeEEeCC-CCCeEEE
Q 040370 17 QDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQ------------CYLSANVPEISVNGAINQVRYSS-TGGMYVT 82 (228)
Q Consensus 17 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~------------~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~ 82 (228)
.|.+.|+++...+ .|+++++|+.||.|.+||+++.. ++...+.+.. |+-.|.++.|-| |...|.+
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~-Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENG-HKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCcc-ceeeeeeeEEeeecCceeec
Confidence 5889999999998 79999999999999999998643 1111222233 478899999999 6668899
Q ss_pred EecCCeEEEEeCCCCceeeEEecccccceeEEEEECCC---CCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEE
Q 040370 83 ASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD---QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQA 159 (228)
Q Consensus 83 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
++-|.++++||.++-+....++. ++.|.+-+++|- ..++++|..|-.|++.|+.+|.....+.+ |...+.++
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~m---e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG--Hr~~vlaV 194 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKM---EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG--HRDGVLAV 194 (397)
T ss_pred ccccceEEEeecccceeeEEeec---CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc--ccCceEEE
Confidence 99999999999999998888877 668899999983 34688888999999999999999999988 78889999
Q ss_pred EECCCCcEEEEeeCCCCeEEEEEcCCc-ceeEEe-------------ecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 160 VFNDTEEFVLSIDEPSNEIVIWDALTA-EKVAKW-------------SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~-------------~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
.|+|..++++++++.||.|++||++.. .+...+ ...|.+.++.++|+.++.++++++.|.++++|+
T Consensus 195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence 999999999999999999999999865 222211 246888999999999999999999999999998
Q ss_pred e
Q 040370 226 E 226 (228)
Q Consensus 226 ~ 226 (228)
.
T Consensus 275 ~ 275 (397)
T KOG4283|consen 275 M 275 (397)
T ss_pred c
Confidence 5
No 75
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=5.5e-29 Score=173.46 Aligned_cols=205 Identities=16% Similarity=0.220 Sum_probs=179.8
Q ss_pred eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370 12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL 91 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 91 (228)
...+..|+.+|.+++.+|+.+++++|+.|..-.+|++.+++....+. +| +..|+++.|+.+|.+||||+.+|.|+|
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~elt---gH-KDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELT---GH-KDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEec---CC-CCceEEEEEccCceEEEecCCCccEEE
Confidence 45667899999999999999999999999999999999998554443 33 899999999999999999999999999
Q ss_pred EeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370 92 WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI 171 (228)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
|+..++.....+... ...+.-+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+ |...+.+-.|.|+|+.++++
T Consensus 133 ~~~stg~~~~~~~~e--~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G--h~~~ct~G~f~pdGKr~~tg 208 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQE--VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG--HNSPCTCGEFIPDGKRILTG 208 (399)
T ss_pred EEcccCceEEEeecc--cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecC--CCCCcccccccCCCceEEEE
Confidence 999999888877643 56788899999999999999999999999998878888877 77888899999999999886
Q ss_pred eCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 172 DEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 172 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
.. ||+|++|+.++++++..+.........++.++..+..+++|+.++.+++-+
T Consensus 209 y~-dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~ 261 (399)
T KOG0296|consen 209 YD-DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVN 261 (399)
T ss_pred ec-CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEc
Confidence 55 899999999999999998655566788889998999999999988877643
No 76
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.9e-28 Score=166.96 Aligned_cols=204 Identities=16% Similarity=0.232 Sum_probs=165.4
Q ss_pred cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccce------------------------------------
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE------------------------------------ 61 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~------------------------------------ 61 (228)
....|+++.|+++|..+++++.|..+++||..+++.........
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 57899999999999999999999999999998877655433221
Q ss_pred ----eeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEE
Q 040370 62 ----ISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWE 137 (228)
Q Consensus 62 ----~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd 137 (228)
..|...|++++.+|-+..+++++.|++|++||++..++...+... . -..++|.|+|-++|++.....|++||
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~--~pi~AfDp~GLifA~~~~~~~IkLyD 168 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--G--RPIAAFDPEGLIFALANGSELIKLYD 168 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--C--CcceeECCCCcEEEEecCCCeEEEEE
Confidence 224889999999998899999999999999999988877766653 2 23578999999999998888999999
Q ss_pred ccCC--eeEEEEecc-eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCC---cEEEEeCCCCcE
Q 040370 138 VSSG--RLVKQYLGA-THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGA---PRWIEHSPAEAA 211 (228)
Q Consensus 138 ~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~ 211 (228)
+|.- .+..++... ........+.|+|+|++++.+.. .+.+++.|.-+|.....+ ..+... .....|+||+++
T Consensus 169 ~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~G~~~~tf-s~~~~~~~~~~~a~ftPds~F 246 (311)
T KOG1446|consen 169 LRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN-ASFIYLLDAFDGTVKSTF-SGYPNAGNLPLSATFTPDSKF 246 (311)
T ss_pred ecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC-CCcEEEEEccCCcEeeeE-eeccCCCCcceeEEECCCCcE
Confidence 9864 233344322 24556788999999999999877 599999999999988877 333332 257789999999
Q ss_pred EEEecCCCCEEEeeec
Q 040370 212 FITCGTDRSVRFWKEI 227 (228)
Q Consensus 212 l~s~~~dg~i~vwd~~ 227 (228)
+++|+.||+|.+|++.
T Consensus 247 vl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 247 VLSGSDDGTIHVWNLE 262 (311)
T ss_pred EEEecCCCcEEEEEcC
Confidence 9999999999999963
No 77
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=2.5e-29 Score=178.86 Aligned_cols=201 Identities=23% Similarity=0.300 Sum_probs=176.8
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN 98 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 98 (228)
...++++...|..+.+++|+.|..+.++|...++.+..+. +| ...|+.+.++|+...+++++.|..|+||......
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~---Gh-~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLK---GH-TKKITSVKFHKDLDTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhcc---Cc-ceEEEEEEeccchhheeecCCcceEEeecccccc
Confidence 3578889888888899999999999999999888766554 33 7889999999999999999999999999988777
Q ss_pred eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeE
Q 040370 99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEI 178 (228)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 178 (228)
.......| ..+|+.+..+|.|.||++++.|+...+.|++++..+.............+..|+|||..+.+ |..|+.+
T Consensus 295 ~~~~~~~h--~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgt-gt~d~~v 371 (506)
T KOG0289|consen 295 EPTSSRPH--EEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGT-GTPDGVV 371 (506)
T ss_pred Cccccccc--cccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEec-cCCCceE
Confidence 66666555 78999999999999999999999999999999998877765434566889999999987666 5558999
Q ss_pred EEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 179 VIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 179 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
++||++++.....+ .+|.++|..++|+.+|-+|++++.|+.|++||++
T Consensus 372 kiwdlks~~~~a~F-pght~~vk~i~FsENGY~Lat~add~~V~lwDLR 419 (506)
T KOG0289|consen 372 KIWDLKSQTNVAKF-PGHTGPVKAISFSENGYWLATAADDGSVKLWDLR 419 (506)
T ss_pred EEEEcCCccccccC-CCCCCceeEEEeccCceEEEEEecCCeEEEEEeh
Confidence 99999999988888 6899999999999999999999999999999986
No 78
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=4.9e-28 Score=185.52 Aligned_cols=180 Identities=13% Similarity=0.183 Sum_probs=143.1
Q ss_pred ecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeEEEEeCCCCc--------eeeEEeccc
Q 040370 37 GTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAIRLWDGVSAN--------CVRSIVGAH 107 (228)
Q Consensus 37 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~--------~~~~~~~~~ 107 (228)
|+.++.|++|+......+..+. +| .+.|.+++|+|+ +++|++|+.||.|++||+.++. ....+..|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~---gH-~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH- 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLK---GH-TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH- 124 (568)
T ss_pred CCceeEEEeeecCCCceEEEEc---CC-CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC-
Confidence 5667889999887654433332 33 889999999996 7899999999999999998642 22234444
Q ss_pred ccceeEEEEECCCCCE-EEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCc
Q 040370 108 GTAEATSANFTKDQRF-VLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA 186 (228)
Q Consensus 108 ~~~~i~~~~~~~~~~~-l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 186 (228)
...|.+++|+|++.. +++++.|+.|++||+++++....+. +...+.++.|+|++..+++++. |+.|++||++++
T Consensus 125 -~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~---~~~~V~SlswspdG~lLat~s~-D~~IrIwD~Rsg 199 (568)
T PTZ00420 125 -KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN---MPKKLSSLKWNIKGNLLSGTCV-GKHMHIIDPRKQ 199 (568)
T ss_pred -CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe---cCCcEEEEEECCCCCEEEEEec-CCEEEEEECCCC
Confidence 678999999998875 5789999999999999988776664 3456889999999998877655 799999999999
Q ss_pred ceeEEeecCCCCCcEEE-----EeCCCCcEEEEecCCC----CEEEeeec
Q 040370 187 EKVAKWSSNHIGAPRWI-----EHSPAEAAFITCGTDR----SVRFWKEI 227 (228)
Q Consensus 187 ~~~~~~~~~~~~~v~~~-----~~~~~~~~l~s~~~dg----~i~vwd~~ 227 (228)
+.+..+ .+|.+.+... .|++++.+|+++|.|+ .|+|||+.
T Consensus 200 ~~i~tl-~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr 248 (568)
T PTZ00420 200 EIASSF-HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK 248 (568)
T ss_pred cEEEEE-ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence 988877 6788765432 3568889999988774 69999975
No 79
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=8.9e-29 Score=188.91 Aligned_cols=201 Identities=19% Similarity=0.397 Sum_probs=173.5
Q ss_pred ceeEE-EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe
Q 040370 10 KRAFR-VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA 88 (228)
Q Consensus 10 ~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 88 (228)
..+.. +.+|.+.|.++++..-+.++++|+.|.++++||..++++...+..+ .+.|.++... ...+++|+.|.+
T Consensus 239 ~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh----~stv~~~~~~--~~~~~sgs~D~t 312 (537)
T KOG0274|consen 239 YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGH----TSSVRCLTID--PFLLVSGSRDNT 312 (537)
T ss_pred eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCC----CceEEEEEcc--CceEeeccCCce
Confidence 34444 7799999999999877889999999999999999999998887743 7788888775 456888999999
Q ss_pred EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEE
Q 040370 89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFV 168 (228)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (228)
|++|+++++..+..+.+| ..+|.++..+ +.++++|+.|++|++||+.+++++..+.+ |...+.++.+.+. ..+
T Consensus 313 VkVW~v~n~~~l~l~~~h--~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~g--H~~~V~sl~~~~~-~~~ 385 (537)
T KOG0274|consen 313 VKVWDVTNGACLNLLRGH--TGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSG--HTGRVYSLIVDSE-NRL 385 (537)
T ss_pred EEEEeccCcceEEEeccc--cccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecC--CcceEEEEEecCc-ceE
Confidence 999999999999999874 8899999987 88999999999999999999999999998 7778888877665 555
Q ss_pred EEeeCCCCeEEEEEcCCc-ceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 169 LSIDEPSNEIVIWDALTA-EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 169 ~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+. |+.|+.|++||+++. +++..+ .+|.+-+..+.+ .+++|++++.|+.|++||..
T Consensus 386 ~S-gs~D~~IkvWdl~~~~~c~~tl-~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 386 LS-GSLDTTIKVWDLRTKRKCIHTL-QGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAE 441 (537)
T ss_pred Ee-eeeccceEeecCCchhhhhhhh-cCCccccccccc--ccceeEeccccccEEEeecc
Confidence 55 555899999999999 788777 788888876665 67799999999999999863
No 80
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7e-28 Score=165.10 Aligned_cols=207 Identities=22% Similarity=0.329 Sum_probs=169.8
Q ss_pred ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370 10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI 89 (228)
Q Consensus 10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 89 (228)
+.+..+.+|...|++++.+|-++.+++++.|++|++||++..++...+.. ..-..++|.|+|-++|++.....|
T Consensus 91 kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~------~~~pi~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 91 KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL------SGRPIAAFDPEGLIFALANGSELI 164 (311)
T ss_pred ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec------CCCcceeECCCCcEEEEecCCCeE
Confidence 44455669999999999999889999999999999999998776555443 233558899999999999888899
Q ss_pred EEEeCCCC--ceeeEEecc-cccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeee-eeeEEEECCCC
Q 040370 90 RLWDGVSA--NCVRSIVGA-HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQ-LRFQAVFNDTE 165 (228)
Q Consensus 90 ~iwd~~~~--~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 165 (228)
++||++.- .+...+... ....+.+.+.|+|+|++++.+...+.+++.|.-+|..+..+....... ....++|.|++
T Consensus 165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds 244 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS 244 (311)
T ss_pred EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence 99999874 334444332 236688999999999999999999999999999999888887644333 33678899999
Q ss_pred cEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 166 EFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 166 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
++++++.. ||+|.+|+++++..+..+...+.+++.++.|+|.-..+++++. .+.+|=
T Consensus 245 ~Fvl~gs~-dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw~ 301 (311)
T KOG1446|consen 245 KFVLSGSD-DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFWL 301 (311)
T ss_pred cEEEEecC-CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc--eEEEEe
Confidence 99998665 8999999999999999995558999999999998888887754 677773
No 81
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=4.3e-29 Score=181.27 Aligned_cols=216 Identities=19% Similarity=0.281 Sum_probs=164.7
Q ss_pred eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEE-eeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370 11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCY-LSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI 89 (228)
Q Consensus 11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 89 (228)
..+.+.+|+..|.++++.|.|.+|++|+.|..|++||+...... ..++.........|+++.|++.|..|++.+.....
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 44566688999999999999999999999999999999764321 11222222225679999999999999998888999
Q ss_pred EEEeCCCCceeeEEec----------ccccceeEEEEECCC-CCEEEEeeCCCeEEEEEccCCee-EEEEe---cceeee
Q 040370 90 RLWDGVSANCVRSIVG----------AHGTAEATSANFTKD-QRFVLSCGKDSTVKLWEVSSGRL-VKQYL---GATHTQ 154 (228)
Q Consensus 90 ~iwd~~~~~~~~~~~~----------~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~-~~~~~---~~~~~~ 154 (228)
+|+|-...+.....++ ..|...+++-+|+|. .+.+++++.||++++||+.+.+. ...++ ......
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 9999543333322221 123778999999995 46799999999999999986543 22232 122445
Q ss_pred eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc--eeEEeecCCCC--CcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE--KVAKWSSNHIG--APRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.+..+.|++++..+++++. ||.|.+|+..+.. +...+..+|.. .|++|.||++|++|++-|.|+++++||++
T Consensus 319 ~~tsC~~nrdg~~iAagc~-DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCL-DGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred CceeeecCCCcchhhhccc-CCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence 6788999999999777655 8999999975433 34444467877 89999999999999999999999999986
No 82
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.7e-28 Score=175.83 Aligned_cols=199 Identities=20% Similarity=0.233 Sum_probs=167.3
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC-
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV- 95 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~- 95 (228)
--+++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..... | -..|+|+.|+.||.+|+||+.||.|.+|++-
T Consensus 79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~a---H-YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSA---H-YQSITCLKFSDDGSHIITGSKDGAVLVWLLTD 154 (476)
T ss_pred ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHh---h-ccceeEEEEeCCCcEEEecCCCccEEEEEEEe
Confidence 3478899999999999999999999999999999997765533 3 7889999999999999999999999999753
Q ss_pred --------CCceeeEEecccccceeEEEEECCC--CCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCC
Q 040370 96 --------SANCVRSIVGAHGTAEATSANFTKD--QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE 165 (228)
Q Consensus 96 --------~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (228)
+-++...+..| .-+|+++...+. ..+++|++.|.++++||+..+..+.++. .+..+.+++.+|.+
T Consensus 155 lv~a~~~~~~~p~~~f~~H--tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~---fp~si~av~lDpae 229 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDH--TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT---FPSSIKAVALDPAE 229 (476)
T ss_pred ecccccCCCccceeeeccC--cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe---cCCcceeEEEcccc
Confidence 23455555554 889999887764 4689999999999999999999888876 46678899999999
Q ss_pred cEEEEeeCCCCeEEEEEcCCcc----------------eeEEeecCCCC--CcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 166 EFVLSIDEPSNEIVIWDALTAE----------------KVAKWSSNHIG--APRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 166 ~~~~~~~~~d~~i~i~d~~~~~----------------~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
..++++++ +|.|.+.++.... ....+ .+|.+ +|+|++.+-||.+|++|+.||.|+|||+
T Consensus 230 ~~~yiGt~-~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~-~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 230 RVVYIGTE-EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL-VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred cEEEecCC-cceEEeeehhcCCcccccccccccccccceeeee-ccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 99999766 7999998875432 12222 57887 9999999999999999999999999996
No 83
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.3e-29 Score=184.02 Aligned_cols=211 Identities=17% Similarity=0.288 Sum_probs=165.9
Q ss_pred EEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEee-ec-cceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370 13 FRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLS-AN-VPEISVNGAINQVRYSSTGGMYVTASKDGAI 89 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~-~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 89 (228)
....+|...++|-+|+| +...|++++.||++++|++++.+.... +. ...+...-+++.++|+|+++.||+|+.||.|
T Consensus 262 ~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSI 341 (641)
T KOG0772|consen 262 YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSI 341 (641)
T ss_pred hccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCce
Confidence 34568999999999999 456789999999999999987542211 11 1111115578999999999999999999999
Q ss_pred EEEeCCCCc--eeeEEe-cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe-eEEEEecceeeeeeeEEEECCCC
Q 040370 90 RLWDGVSAN--CVRSIV-GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR-LVKQYLGATHTQLRFQAVFNDTE 165 (228)
Q Consensus 90 ~iwd~~~~~--~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 165 (228)
.+|+..+.. ....+. .|.....|+|+.|+++|++|++-+.|+++++||+++.+ ++....+-........++|+|+.
T Consensus 342 Q~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~ 421 (641)
T KOG0772|consen 342 QIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD 421 (641)
T ss_pred eeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCc
Confidence 999976542 223333 34334589999999999999999999999999999865 44555544455566789999999
Q ss_pred cEEEEeeC-----CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370 166 EFVLSIDE-----PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224 (228)
Q Consensus 166 ~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 224 (228)
+.++++.+ ..|.+.+||..+.+.+..+ .-....|..+.|+|.-+.|+.|+.||.+++|
T Consensus 422 kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki-~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 422 KLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI-DISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred eEEEecccccCCCCCceEEEEeccceeeEEEe-cCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 99998654 2478999999999988888 3447789999999988889999999999875
No 84
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.3e-29 Score=179.15 Aligned_cols=212 Identities=17% Similarity=0.291 Sum_probs=177.8
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
+|+.+.... ..++.+|++.|+++.|......+++|+.|.+|++||+.+..+...... .+.+..|..+ ...+
T Consensus 245 ~Wnvd~~r~--~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-----~S~cnDI~~~--~~~~ 315 (459)
T KOG0288|consen 245 LWNVDSLRL--RHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-----GSQCNDIVCS--ISDV 315 (459)
T ss_pred eeeccchhh--hhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-----cccccceEec--ceee
Confidence 466664433 344557999999999988777799999999999999999887766544 4556667766 4568
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce--eeeeeeE
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT--HTQLRFQ 158 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~ 158 (228)
++|-.|+.|++||.++......... .+.|+++..++++..+.+++.|.++.+.|+++.+....+.... .......
T Consensus 316 ~SgH~DkkvRfwD~Rs~~~~~sv~~---gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtr 392 (459)
T KOG0288|consen 316 ISGHFDKKVRFWDIRSADKTRSVPL---GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTR 392 (459)
T ss_pred eecccccceEEEeccCCceeeEeec---CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccce
Confidence 8999999999999999999998887 4589999999999999999999999999999988777765321 2334678
Q ss_pred EEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCC-CcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 159 AVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIG-APRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
+.|+|++.|+++++. ||.|+||++.+++....+...+.. .|++++|+|.|..|++++.++.+.+|.
T Consensus 393 vvfSpd~~YvaAGS~-dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 393 VVFSPDGSYVAAGSA-DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eEECCCCceeeeccC-CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 899999999999666 899999999999998888555555 799999999999999999999999993
No 85
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.9e-28 Score=191.12 Aligned_cols=214 Identities=15% Similarity=0.282 Sum_probs=173.5
Q ss_pred ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEccc---c------------eEEeeeccceeeeccceeeEEeC
Q 040370 10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNT---F------------QCYLSANVPEISVNGAINQVRYS 74 (228)
Q Consensus 10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~---~------------~~~~~~~~~~~~~~~~i~~~~~~ 74 (228)
+.......|.+.|+|+.|+|||++||+|++|+.|.||.... + +.........+| .+.|..++|+
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H-~~DV~Dv~Ws 138 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH-DSDVLDVNWS 138 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecC-CCccceeccC
Confidence 44556668999999999999999999999999999999873 0 011122233344 8999999999
Q ss_pred CCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe------
Q 040370 75 STGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL------ 148 (228)
Q Consensus 75 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~------ 148 (228)
|++.++++++.|++|.+||.++.+.+..+.+| ...|..+.|.|-|+||++-+.|++|++|++.+....+.+.
T Consensus 139 p~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H--~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~ 216 (942)
T KOG0973|consen 139 PDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH--QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES 216 (942)
T ss_pred CCccEEEEecccceEEEEccccceeeeeeecc--cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhC
Confidence 99999999999999999999999999999887 7799999999999999999999999999965422111110
Q ss_pred --------------------------------------------cceeeeeeeEEEECCC---------------CcE-E
Q 040370 149 --------------------------------------------GATHTQLRFQAVFNDT---------------EEF-V 168 (228)
Q Consensus 149 --------------------------------------------~~~~~~~~~~~~~~~~---------------~~~-~ 168 (228)
.-.|..++..+.|+|. ..| +
T Consensus 217 ~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i 296 (942)
T KOG0973|consen 217 PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCI 296 (942)
T ss_pred CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEE
Confidence 0114556777888762 122 7
Q ss_pred EEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 169 LSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 169 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
+++|+.|++|-||.....+++.....-....|..++|+|||..|+.+|.||+|.+...
T Consensus 297 ~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~F 354 (942)
T KOG0973|consen 297 AAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHF 354 (942)
T ss_pred EEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEc
Confidence 8889999999999998888887775566789999999999999999999999998764
No 86
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.2e-28 Score=165.95 Aligned_cols=201 Identities=17% Similarity=0.274 Sum_probs=145.4
Q ss_pred cCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccc-eEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC
Q 040370 18 DTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTF-QCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV 95 (228)
Q Consensus 18 ~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~ 95 (228)
..+.|.+++||| ...++++|+.|++||+|+++.. .... +... .|.++|.+++|+.+|..+++|+.|+.+++||+.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--ka~~-~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--KAQQ-SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc--hhhh-ccCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence 467899999999 5566779999999999999874 3332 2222 238999999999999999999999999999999
Q ss_pred CCceeeEEecccccceeEEEEECCCCC--EEEEeeCCCeEEEEEccCCeeEEEEeccee---------------------
Q 040370 96 SANCVRSIVGAHGTAEATSANFTKDQR--FVLSCGKDSTVKLWEVSSGRLVKQYLGATH--------------------- 152 (228)
Q Consensus 96 ~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~--------------------- 152 (228)
+++ ...+..| ..+|..+.|-+... .|+||+.|++|++||+|...++.++..+..
T Consensus 103 S~Q-~~~v~~H--d~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~ 179 (347)
T KOG0647|consen 103 SGQ-VSQVAAH--DAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIA 179 (347)
T ss_pred CCC-eeeeeec--ccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEE
Confidence 995 4445555 78999999988655 899999999999999998877766543211
Q ss_pred ------------------eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcce--eEEeecCCC---------CCcEEE
Q 040370 153 ------------------TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK--VAKWSSNHI---------GAPRWI 203 (228)
Q Consensus 153 ------------------~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~---------~~v~~~ 203 (228)
.-.+.+++..++....+.++- +|.+.+..+..+.+ -..+ .-|. ..|++|
T Consensus 180 vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi-EGrv~iq~id~~~~~~nFtF-kCHR~~~~~~~~VYaVNsi 257 (347)
T KOG0647|consen 180 VYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI-EGRVAIQYIDDPNPKDNFTF-KCHRSTNSVNDDVYAVNSI 257 (347)
T ss_pred EEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee-cceEEEEecCCCCccCceeE-EEeccCCCCCCceEEecce
Confidence 001122333333333333222 46666666555422 2222 2232 257889
Q ss_pred EeCCCCcEEEEecCCCCEEEeee
Q 040370 204 EHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 204 ~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
+|+|.-..|+|+|.||++.+||-
T Consensus 258 ~FhP~hgtlvTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 258 AFHPVHGTLVTAGSDGTFSFWDK 280 (347)
T ss_pred EeecccceEEEecCCceEEEecc
Confidence 99999999999999999999995
No 87
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.8e-27 Score=155.98 Aligned_cols=208 Identities=14% Similarity=0.296 Sum_probs=168.7
Q ss_pred EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeee--ccceeeeccceeeEEeCCC----CCeEEEEe-cC
Q 040370 14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSA--NVPEISVNGAINQVRYSST----GGMYVTAS-KD 86 (228)
Q Consensus 14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~----~~~l~~~~-~d 86 (228)
+...|.+.|.|.+|+|+|+++++|++|.+|++...+...+...- .....| .+.|..++|..+ +..|++++ .|
T Consensus 84 r~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmh-dgtirdl~fld~~~s~~~il~s~gagd 162 (350)
T KOG0641|consen 84 RNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMH-DGTIRDLAFLDDPESGGAILASAGAGD 162 (350)
T ss_pred eccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeec-CCceeeeEEecCCCcCceEEEecCCCc
Confidence 34468899999999999999999999999999877654432221 112233 889999999643 45666655 57
Q ss_pred CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce-----eeeeeeEEEE
Q 040370 87 GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT-----HTQLRFQAVF 161 (228)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-----~~~~~~~~~~ 161 (228)
..|++-|...++..+.+.+| .+.|.++ ++-++-.+++|+.|.+|++||++-...+.++.... ....+..++.
T Consensus 163 c~iy~tdc~~g~~~~a~sgh--tghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 163 CKIYITDCGRGQGFHALSGH--TGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred ceEEEeecCCCCcceeecCC--cccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence 78888899999999998887 5666665 34468899999999999999999888887764322 2467888999
Q ss_pred CCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 162 NDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 162 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.|.|+.+++ |..|....+||++.++.+..+ ..|...|.++.|+|...++++|+.|..|++-|+.
T Consensus 240 dpsgrll~s-g~~dssc~lydirg~r~iq~f-~phsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 240 DPSGRLLAS-GHADSSCMLYDIRGGRMIQRF-HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred CCCcceeee-ccCCCceEEEEeeCCceeeee-CCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 999998877 455899999999999999998 7899999999999999999999999999998863
No 88
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.1e-28 Score=163.74 Aligned_cols=210 Identities=12% Similarity=0.176 Sum_probs=177.0
Q ss_pred CcCCccccceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 2 FDFSKATAKRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 2 wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
|++............+|.+.|-.++|+| +.+.|++++.|.+|++||...+++....... +.=.-+.|+|+|+++
T Consensus 47 ~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~-----~eni~i~wsp~g~~~ 121 (313)
T KOG1407|consen 47 WNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK-----GENINITWSPDGEYI 121 (313)
T ss_pred EEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc-----CcceEEEEcCCCCEE
Confidence 4444333333444558999999999998 6789999999999999999999987766543 333457899999999
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV 160 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
+.++.|..|...|.++.+.....+. ...+.-++|+.++..++.....|.|.|......+++..++. |+....++.
T Consensus 122 ~~~~kdD~it~id~r~~~~~~~~~~---~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~A--H~snCicI~ 196 (313)
T KOG1407|consen 122 AVGNKDDRITFIDARTYKIVNEEQF---KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKA--HPSNCICIE 196 (313)
T ss_pred EEecCcccEEEEEecccceeehhcc---cceeeeeeecCCCCEEEEecCCceEEEEecccccccccccc--CCcceEEEE
Confidence 9999999999999998887776655 55788899998888877777789999999998899999887 678899999
Q ss_pred ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEE
Q 040370 161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRF 223 (228)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v 223 (228)
|+|+|+|+++++. |..+.+||+...-+...+ ..+.-+|..+.|+.+|++||++|+|..|-|
T Consensus 197 f~p~GryfA~GsA-DAlvSLWD~~ELiC~R~i-sRldwpVRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 197 FDPDGRYFATGSA-DALVSLWDVDELICERCI-SRLDWPVRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred ECCCCceEeeccc-cceeeccChhHhhhheee-ccccCceEEEEeccCcceeeccCccceEEe
Confidence 9999999998665 899999999988888887 678999999999999999999999987755
No 89
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=172.16 Aligned_cols=197 Identities=19% Similarity=0.295 Sum_probs=162.8
Q ss_pred EEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeEEE
Q 040370 14 RVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAIRL 91 (228)
Q Consensus 14 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~i 91 (228)
.+.+|+.+|..+.|+| ++..|++|++|+.+++||+.+......+ .+| ...|.|.+|+|. +..++||+.||.|++
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l---~~h-tDYVR~g~~~~~~~hivvtGsYDg~vrl 180 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL---SGH-TDYVRCGDISPANDHIVVTGSYDGKVRL 180 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe---cCC-cceeEeeccccCCCeEEEecCCCceEEE
Confidence 3457999999999999 5667788999999999999987742222 233 899999999995 558999999999999
Q ss_pred EeCCCC-ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee-EEEEecceeeeeeeEEEECCCCcEEE
Q 040370 92 WDGVSA-NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL-VKQYLGATHTQLRFQAVFNDTEEFVL 169 (228)
Q Consensus 92 wd~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (228)
||++.. ..+.++.. ..+|..+.+-|.|..+++++. ..+++||+-+|.. +..+.. |...++++.+..++..++
T Consensus 181 ~DtR~~~~~v~elnh---g~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~--H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 181 WDTRSLTSRVVELNH---GCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFN--HNKTVTCLRLASDSTRLL 254 (487)
T ss_pred EEeccCCceeEEecC---CCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhc--ccceEEEEEeecCCceEe
Confidence 999987 44444432 779999999999999998874 5799999986554 444433 788899999999998888
Q ss_pred EeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEE
Q 040370 170 SIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRF 223 (228)
Q Consensus 170 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v 223 (228)
+++- |+.+++||..+-+.+..+ ...++|.+++.+|+++.++.|..||.+.+
T Consensus 255 S~sL-D~~VKVfd~t~~Kvv~s~--~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 255 SGSL-DRHVKVFDTTNYKVVHSW--KYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred eccc-ccceEEEEccceEEEEee--ecccceeeEEecCCCceEEEecccceeee
Confidence 8665 899999998888888887 67899999999999999999999998754
No 90
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.96 E-value=7.8e-28 Score=168.54 Aligned_cols=215 Identities=17% Similarity=0.288 Sum_probs=168.7
Q ss_pred ccceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEec
Q 040370 8 TAKRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASK 85 (228)
Q Consensus 8 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~ 85 (228)
..++++++.+|...=.+++||| ....|++|..-+.|++|...++.-........+ |...|..++|||. ...|++||.
T Consensus 200 ~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~ 278 (440)
T KOG0302|consen 200 EFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDGVFASCSC 278 (440)
T ss_pred ccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccc-cccchhhhccCCccCceEEeeec
Confidence 3467788889999999999999 444688998889999999999776555555555 4999999999995 568999999
Q ss_pred CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC---CeeEEEEecceeeeeeeEEEEC
Q 040370 86 DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS---GRLVKQYLGATHTQLRFQAVFN 162 (228)
Q Consensus 86 dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~---~~~~~~~~~~~~~~~~~~~~~~ 162 (228)
||+|+|||++.+.....+....+...|+.+.|+..-.+|++|+.||+++|||+|+ ++++..++. |..+++++.|+
T Consensus 279 DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~--Hk~pItsieW~ 356 (440)
T KOG0302|consen 279 DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY--HKAPITSIEWH 356 (440)
T ss_pred CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe--ccCCeeEEEec
Confidence 9999999999984433332233377999999999888999999999999999986 456777776 78899999999
Q ss_pred CCCcEEEEeeCCCCeEEEEEcCCcce---------------eEEeecCC--CCCcEEEEeCCC-CcEEEEecCCCCEEEe
Q 040370 163 DTEEFVLSIDEPSNEIVIWDALTAEK---------------VAKWSSNH--IGAPRWIEHSPA-EAAFITCGTDRSVRFW 224 (228)
Q Consensus 163 ~~~~~~~~~~~~d~~i~i~d~~~~~~---------------~~~~~~~~--~~~v~~~~~~~~-~~~l~s~~~dg~i~vw 224 (228)
|....++++++.|.+|.+||+....- +..+..-| ...+-.+.|+++ ..+|++.+.|| +.||
T Consensus 357 p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 357 PHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred cccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 99888887788899999999853211 11122234 345788999984 45888888888 6666
Q ss_pred ee
Q 040370 225 KE 226 (228)
Q Consensus 225 d~ 226 (228)
..
T Consensus 436 kt 437 (440)
T KOG0302|consen 436 KT 437 (440)
T ss_pred Ee
Confidence 54
No 91
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.8e-27 Score=179.62 Aligned_cols=205 Identities=17% Similarity=0.218 Sum_probs=176.5
Q ss_pred eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370 12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL 91 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 91 (228)
.+.+.+|...|++++++.+...+++|+. +.+++|+..+.+++.++. .+.+.+..|-|.++++++|...|.+.+
T Consensus 366 ~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~------~~y~l~~~Fvpgd~~Iv~G~k~Gel~v 438 (888)
T KOG0306|consen 366 NIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTIT------CGYILASKFVPGDRYIVLGTKNGELQV 438 (888)
T ss_pred eeeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEec------cccEEEEEecCCCceEEEeccCCceEE
Confidence 4667799999999999988888887764 679999999999988776 557899999999999999999999999
Q ss_pred EeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC-----eeEEEEe-----cceeeeeeeEEEE
Q 040370 92 WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG-----RLVKQYL-----GATHTQLRFQAVF 161 (228)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-----~~~~~~~-----~~~~~~~~~~~~~ 161 (228)
+|+.+...+..+..| .+.+.+++.+||+..+++|+.|.+|++||..-. .....+. .-.-...+.++.+
T Consensus 439 fdlaS~~l~Eti~AH--dgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~ 516 (888)
T KOG0306|consen 439 FDLASASLVETIRAH--DGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSV 516 (888)
T ss_pred EEeehhhhhhhhhcc--ccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEE
Confidence 999999988888865 889999999999999999999999999997521 1111111 1113567889999
Q ss_pred CCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 162 NDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 162 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+|++++++++=- |+++++|-+.+.+....+ -+|.-||.++..+||+++++|||.|..|++|-+.
T Consensus 517 Spdgk~LaVsLL-dnTVkVyflDtlKFflsL-YGHkLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 517 SPDGKLLAVSLL-DNTVKVYFLDTLKFFLSL-YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred cCCCcEEEEEec-cCeEEEEEecceeeeeee-cccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 999999998665 899999999999988888 6999999999999999999999999999999763
No 92
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.8e-29 Score=173.83 Aligned_cols=202 Identities=16% Similarity=0.302 Sum_probs=164.5
Q ss_pred EEEeecCcceEEEEEeCCC-CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370 13 FRVIQDTHNVRSVSFHPSG-DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL 91 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 91 (228)
-.+.+|.+.|.|++=+|.. ..+++|+.||.|++||+....+...+..+ .+.|..+++.. ..+++++.|.+|+.
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH----~G~V~Gi~v~~--~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAH----EGLVRGICVTQ--TSFFTVGDDKTVKQ 133 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecc----cCceeeEEecc--cceEEecCCcceee
Confidence 3557899999999999976 78999999999999999987776666543 78899999975 56888888988888
Q ss_pred EeCCC--------------------------------------CceeeEEecccccceeEEEEECC-CCCEEEEeeCCCe
Q 040370 92 WDGVS--------------------------------------ANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDST 132 (228)
Q Consensus 92 wd~~~--------------------------------------~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~ 132 (228)
|.++- ..+++.+.-. ...|.++.|+| ....|++++.|+.
T Consensus 134 wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG--~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 134 WKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWG--ADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred eeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecC--CCceeEEecCCCcchheeeeccCCc
Confidence 86332 1122222221 45678888999 4457888889999
Q ss_pred EEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEE
Q 040370 133 VKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAF 212 (228)
Q Consensus 133 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 212 (228)
|.+||++++.++..... ......++|+| ..+.++++.+|..++.||++..+.......+|.+.|.+++|+|.|+-+
T Consensus 212 IvLyD~R~~~Pl~KVi~---~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Ef 287 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVIL---TMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEF 287 (433)
T ss_pred eEEEecccCCccceeee---eccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchh
Confidence 99999999998887763 34456789999 777777788899999999999887777668999999999999999999
Q ss_pred EEecCCCCEEEeee
Q 040370 213 ITCGTDRSVRFWKE 226 (228)
Q Consensus 213 ~s~~~dg~i~vwd~ 226 (228)
++||.|.+|+||..
T Consensus 288 vsgsyDksIRIf~~ 301 (433)
T KOG0268|consen 288 VSGSYDKSIRIFPV 301 (433)
T ss_pred ccccccceEEEeec
Confidence 99999999999975
No 93
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.3e-28 Score=160.46 Aligned_cols=215 Identities=17% Similarity=0.201 Sum_probs=167.3
Q ss_pred ceeEEEeecCcceEEEEEeC--CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC--CCeEEEEec
Q 040370 10 KRAFRVIQDTHNVRSVSFHP--SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST--GGMYVTASK 85 (228)
Q Consensus 10 ~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~ 85 (228)
+...++.+|.+||..++|.. -|.+||+++.||.|.||.-++++- ........| ...|++++|.|. |-.|++++.
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w-~k~~e~~~h-~~SVNsV~wapheygl~LacasS 124 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW-TKAYEHAAH-SASVNSVAWAPHEYGLLLACASS 124 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch-hhhhhhhhh-cccceeecccccccceEEEEeeC
Confidence 66778889999999999954 799999999999999999888843 222233334 899999999995 568999999
Q ss_pred CCeEEEEeCCCC-c-eeeEEecccccceeEEEEECCC---C-----------CEEEEeeCCCeEEEEEccCCeeEEEEec
Q 040370 86 DGAIRLWDGVSA-N-CVRSIVGAHGTAEATSANFTKD---Q-----------RFVLSCGKDSTVKLWEVSSGRLVKQYLG 149 (228)
Q Consensus 86 dg~v~iwd~~~~-~-~~~~~~~~~~~~~i~~~~~~~~---~-----------~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 149 (228)
||.|.|.+.++. . ....+...| ...+++++|.|. | +.|++|+.|..|+||+..+++-...-..
T Consensus 125 DG~vsvl~~~~~g~w~t~ki~~aH-~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l 203 (299)
T KOG1332|consen 125 DGKVSVLTYDSSGGWTTSKIVFAH-EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL 203 (299)
T ss_pred CCcEEEEEEcCCCCccchhhhhcc-ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhh
Confidence 999999988754 2 223333333 778999999985 4 5699999999999999988654332223
Q ss_pred ceeeeeeeEEEECCCC---cEEEEeeCCCCeEEEEEcCCc--ceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370 150 ATHTQLRFQAVFNDTE---EFVLSIDEPSNEIVIWDALTA--EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~~~~~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 224 (228)
..|...+..++|.|.- +..++++++||++.||-.+.. +-..++.......+..+.||+.|+.|+.++.|+.|.+|
T Consensus 204 ~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 204 EGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLW 283 (299)
T ss_pred hhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence 3488899999999864 456667788999999986632 22233334567789999999999999999999999999
Q ss_pred eec
Q 040370 225 KEI 227 (228)
Q Consensus 225 d~~ 227 (228)
...
T Consensus 284 ke~ 286 (299)
T KOG1332|consen 284 KEN 286 (299)
T ss_pred EeC
Confidence 854
No 94
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.6e-27 Score=163.99 Aligned_cols=206 Identities=14% Similarity=0.279 Sum_probs=156.5
Q ss_pred EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccc-eeeeccceeeEEeCCCCCeEE-EEecCCeEEEE
Q 040370 15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP-EISVNGAINQVRYSSTGGMYV-TASKDGAIRLW 92 (228)
Q Consensus 15 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iw 92 (228)
+.+|...|++++|+.||++|++++.|+.|++|++++.+........ ... -+..+.+.|.||.+-++ ++-...++++|
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve-~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE-YDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc-CCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 4489999999999999999999999999999999875432111110 001 23468899999977544 55556689999
Q ss_pred eCCCCc---eee--------EEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEE
Q 040370 93 DGVSAN---CVR--------SIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVF 161 (228)
Q Consensus 93 d~~~~~---~~~--------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 161 (228)
.+...+ ... .+... +...+..+-...++.+|++++.|..|.+||++ |+.+..+.. .......++.
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~k-h~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt--nq~~n~~aav 236 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERK-HQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT--NQSSNYDAAV 236 (420)
T ss_pred EeeecccCCCCcccccccccccchh-cccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc--ccccccceee
Confidence 764322 111 11111 25667777777789999999999999999998 888888765 4445677889
Q ss_pred CCCCcEEEEeeCCCCeEEEEEcC---Cc-----ceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 162 NDTEEFVLSIDEPSNEIVIWDAL---TA-----EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 162 ~~~~~~~~~~~~~d~~i~i~d~~---~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+|+|+++++++.. ..+++|..- .| ..+..+ .+|.+.|.+++|+++...++|.+.||.+++||+.
T Consensus 237 SP~GRFia~~gFT-pDVkVwE~~f~kdG~fqev~rvf~L-kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 237 SPDGRFIAVSGFT-PDVKVWEPIFTKDGTFQEVKRVFSL-KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred CCCCcEEEEecCC-CCceEEEEEeccCcchhhhhhhhee-ccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 9999999999884 889999863 22 123344 7999999999999999999999999999999974
No 95
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.1e-28 Score=186.45 Aligned_cols=202 Identities=16% Similarity=0.280 Sum_probs=160.9
Q ss_pred ceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCeEEEEecCCeEEEEeCCCCc
Q 040370 21 NVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGMYVTASKDGAIRLWDGVSAN 98 (228)
Q Consensus 21 ~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~ 98 (228)
.+..+.|+. +.++||+++..|.|.+||+..............| ...++++.|++ ..++|++|+.||+|++||++..+
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH-~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~ 167 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEH-ERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK 167 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhh-ccceeeeeeccCCccEEEecCCCceEEEEeeeccc
Confidence 455677876 6789999999999999999873222222233334 88999999998 46789999999999999999988
Q ss_pred eeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCe
Q 040370 99 CVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNE 177 (228)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 177 (228)
....+... ...|..+.|+| .+.+++++...|.+.+||+|...... ++...|.+++.++.|+|++.+++++| .|+.
T Consensus 168 S~~t~~~n--SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~-~k~~AH~GpV~c~nwhPnr~~lATGG-RDK~ 243 (839)
T KOG0269|consen 168 SKSTFRSN--SESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE-KKLTAHNGPVLCLNWHPNREWLATGG-RDKM 243 (839)
T ss_pred cccccccc--chhhhceeeccCCCceEEEecCCceEEEeeccCchhHH-HHhhcccCceEEEeecCCCceeeecC-CCcc
Confidence 88887774 77899999999 77899999999999999999764322 22234899999999999888888766 6999
Q ss_pred EEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc-EEEEec--CCCCEEEeeec
Q 040370 178 IVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA-AFITCG--TDRSVRFWKEI 227 (228)
Q Consensus 178 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~--~dg~i~vwd~~ 227 (228)
|+|||+.+++...........+|.++.|-|..+ .|++++ .|-.|+|||++
T Consensus 244 vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 244 VKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred EEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence 999999876654444335567999999999655 567766 48889999986
No 96
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=3.9e-28 Score=171.68 Aligned_cols=214 Identities=15% Similarity=0.232 Sum_probs=176.4
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
+|+.........-.+.+..++|++++|.+++.++++++.|+.+++|++...+....+. +| ...|+++.|......+
T Consensus 201 ~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLs---GH-tdkVt~ak~~~~~~~v 276 (459)
T KOG0288|consen 201 LWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLS---GH-TDKVTAAKFKLSHSRV 276 (459)
T ss_pred hhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhc---cc-ccceeeehhhccccce
Confidence 3665544444445555778899999999999999999999999999999887665554 33 8999999998876669
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV 160 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
++|+.|.+|++||+.+..+.+++.. ...+..+..+ ...+++|-.|++|++||.++..+...... .+.+.++.
T Consensus 277 Vsgs~DRtiK~WDl~k~~C~kt~l~---~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~---gg~vtSl~ 348 (459)
T KOG0288|consen 277 VSGSADRTIKLWDLQKAYCSKTVLP---GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPL---GGRVTSLD 348 (459)
T ss_pred eeccccchhhhhhhhhhheeccccc---cccccceEec--ceeeeecccccceEEEeccCCceeeEeec---CcceeeEe
Confidence 9999999999999999888877665 4456666655 55688999999999999999998888875 34789999
Q ss_pred ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec---CCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS---NHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.++++..++++ +.|.++.+.|+++.+....+.. .-....+.+.|||++.|+++||.||.|+||++.
T Consensus 349 ls~~g~~lLss-sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~ 417 (459)
T KOG0288|consen 349 LSMDGLELLSS-SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVF 417 (459)
T ss_pred eccCCeEEeee-cCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEcc
Confidence 99999999997 5589999999999887776632 122348889999999999999999999999974
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.2e-28 Score=179.43 Aligned_cols=210 Identities=16% Similarity=0.240 Sum_probs=178.2
Q ss_pred eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEe-CCCCCeEEEEecCCeEE
Q 040370 12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRY-SSTGGMYVTASKDGAIR 90 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~v~ 90 (228)
..++..|...|+.++...+++.|++++.|-+|++|+...+. .........| ...|.|+++ -++...+++|+-|+.|.
T Consensus 66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H-~DYVkcla~~ak~~~lvaSgGLD~~If 143 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TFCMSTIRTH-KDYVKCLAYIAKNNELVASGGLDRKIF 143 (735)
T ss_pred hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-chhHhhhhcc-cchheeeeecccCceeEEecCCCccEE
Confidence 44556799999999999999999999999999999998874 1122222233 899999999 77888999999999999
Q ss_pred EEeCCCCc--eeeEEe-------cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEE
Q 040370 91 LWDGVSAN--CVRSIV-------GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVF 161 (228)
Q Consensus 91 iwd~~~~~--~~~~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 161 (228)
+||++++. .+..+. ......+|++++.++.+..+++|+..+.+++||.++.+.+..+.+ |...+..+..
T Consensus 144 lWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrG--HTdNVr~ll~ 221 (735)
T KOG0308|consen 144 LWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRG--HTDNVRVLLV 221 (735)
T ss_pred EEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeec--cccceEEEEE
Confidence 99999772 222211 112367899999999999999999999999999999999999987 7778889999
Q ss_pred CCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 162 NDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 162 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+++|..++++++ ||+|++||+...+++.++ ..|...|.++..+|+-..+++|+.||.|..=|++
T Consensus 222 ~dDGt~~ls~sS-DgtIrlWdLgqQrCl~T~-~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 222 NDDGTRLLSASS-DGTIRLWDLGQQRCLATY-IVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLR 285 (735)
T ss_pred cCCCCeEeecCC-CceEEeeeccccceeeeE-EeccCceEEEeeCCCcceEEecCCCCcEEecccC
Confidence 999999999877 899999999999999998 6899999999999999999999999999876653
No 98
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.1e-28 Score=162.37 Aligned_cols=209 Identities=14% Similarity=0.178 Sum_probs=163.5
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC--CCCeEEEEecCCeEEEEeC
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS--TGGMYVTASKDGAIRLWDG 94 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~iwd~ 94 (228)
+|.+.|..+...--|++||+++.|++|+|+..++......+....+| .++|..++|.. .|.+|++++.||.|.||.-
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh-~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGH-SGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCC-CCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 68888888888778999999999999999999887654444455556 99999999964 7999999999999999998
Q ss_pred CCCceeeEEecccccceeEEEEECCC--CCEEEEeeCCCeEEEEEccCC-eeEEEEecceeeeeeeEEEECCC---C---
Q 040370 95 VSANCVRSIVGAHGTAEATSANFTKD--QRFVLSCGKDSTVKLWEVSSG-RLVKQYLGATHTQLRFQAVFNDT---E--- 165 (228)
Q Consensus 95 ~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~--- 165 (228)
++++-.+......+...|++++|.|. |-.|++++.||.|.+.+.++. ..........|...+.+++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 88754443333334889999999994 568999999999999998764 33333333447778888888876 3
Q ss_pred -------cEEEEeeCCCCeEEEEEcCCcceeE-EeecCCCCCcEEEEeCCCC----cEEEEecCCCCEEEeee
Q 040370 166 -------EFVLSIDEPSNEIVIWDALTAEKVA-KWSSNHIGAPRWIEHSPAE----AAFITCGTDRSVRFWKE 226 (228)
Q Consensus 166 -------~~~~~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~----~~l~s~~~dg~i~vwd~ 226 (228)
.+-+++++.|+.|+||+..+++-.. ....+|.+-|+.++|.|.- .+|++++.||+|.||-.
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK 240 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence 1224445558999999988764222 2247999999999999953 58999999999999964
No 99
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=6.5e-28 Score=174.98 Aligned_cols=220 Identities=20% Similarity=0.320 Sum_probs=183.1
Q ss_pred CCcCCccccceeE---EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCC
Q 040370 1 FFDFSKATAKRAF---RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG 77 (228)
Q Consensus 1 iwd~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 77 (228)
|||+..+..+... ........|+++...|||+.|++|+.-.++.|||+.............. .-...+++.+||.
T Consensus 444 VWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltss--apaCyALa~spDa 521 (705)
T KOG0639|consen 444 VWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSS--APACYALAISPDA 521 (705)
T ss_pred EeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCc--chhhhhhhcCCcc
Confidence 6888876544433 2334567899999999999999999999999999987664433333211 3457789999999
Q ss_pred CeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEE-----------
Q 040370 78 GMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQ----------- 146 (228)
Q Consensus 78 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~----------- 146 (228)
+..++|..||.|.|||+.+...++.+++| ...+.||..+++|..|.+|+-|.+||-||+++++.+..
T Consensus 522 kvcFsccsdGnI~vwDLhnq~~VrqfqGh--tDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg 599 (705)
T KOG0639|consen 522 KVCFSCCSDGNIAVWDLHNQTLVRQFQGH--TDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLG 599 (705)
T ss_pred ceeeeeccCCcEEEEEcccceeeecccCC--CCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecc
Confidence 99999999999999999999999999998 77889999999999999999999999999987653321
Q ss_pred ---------------------------EecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCC
Q 040370 147 ---------------------------YLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGA 199 (228)
Q Consensus 147 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 199 (228)
+..+.|...+.++.|.+.|++++++|. |+-+..|...-|..+... ...++
T Consensus 600 ~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGk-DnlLnawrtPyGasiFqs--kE~Ss 676 (705)
T KOG0639|consen 600 YCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGK-DNLLNAWRTPYGASIFQS--KESSS 676 (705)
T ss_pred cCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCc-hhhhhhccCccccceeec--cccCc
Confidence 223446788899999999999999887 799999999888888776 45789
Q ss_pred cEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 200 PRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 200 v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
|.++.++.|.++++||+.|....||.+.
T Consensus 677 VlsCDIS~ddkyIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 677 VLSCDISFDDKYIVTGSGDKKATVYEVI 704 (705)
T ss_pred ceeeeeccCceEEEecCCCcceEEEEEe
Confidence 9999999999999999999999999874
No 100
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=7.5e-29 Score=186.26 Aligned_cols=197 Identities=20% Similarity=0.342 Sum_probs=171.4
Q ss_pred eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370 12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL 91 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 91 (228)
...+.+|..+|.++.|+++..+|++|+.+|+|++||++..+.+..+. +| ...+.++.|+|-+.++++|+.|+.+++
T Consensus 63 i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt---gh-~~~~~sv~f~P~~~~~a~gStdtd~~i 138 (825)
T KOG0267|consen 63 ITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT---GH-LLNITSVDFHPYGEFFASGSTDTDLKI 138 (825)
T ss_pred hheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhh---cc-ccCcceeeeccceEEecccccccccee
Confidence 34567899999999999999999999999999999999887665443 33 788999999999999999999999999
Q ss_pred EeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370 92 WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI 171 (228)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
||.+...+...+..| ...+..+.|+|+|++++.++.|.++++||+..|+....|.. |...+..+.|+|..- +++.
T Consensus 139 wD~Rk~Gc~~~~~s~--~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~--~e~~v~sle~hp~e~-Lla~ 213 (825)
T KOG0267|consen 139 WDIRKKGCSHTYKSH--TRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEV-LLAP 213 (825)
T ss_pred hhhhccCceeeecCC--cceeEEEeecCCCceeeccCCcceeeeeccccccccccccc--ccccccccccCchhh-hhcc
Confidence 999988888888874 77899999999999999999999999999999999999987 666777777877654 4555
Q ss_pred eCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCC
Q 040370 172 DEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTD 218 (228)
Q Consensus 172 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 218 (228)
|+.|+++++||+++.+.+... ......|.+.+|+|++..+++|..+
T Consensus 214 Gs~d~tv~f~dletfe~I~s~-~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 214 GSSDRTVRFWDLETFEVISSG-KPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CCCCceeeeeccceeEEeecc-CCccCCceeeeecCCceeeecCchh
Confidence 666999999999998888877 4557899999999999988887654
No 101
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.1e-27 Score=164.99 Aligned_cols=206 Identities=16% Similarity=0.307 Sum_probs=170.6
Q ss_pred eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370 12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL 91 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 91 (228)
...+.+|.+.|..++.......+.+++.|.+.+||.++++.++..+..+ .+.|++++|++.+.++++++.|++-.|
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH----~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGH----TGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeeccc----ccceeeEEeccccceEEEccCCcchHH
Confidence 3345689999999999887778899999999999999999998877643 889999999999999999999999999
Q ss_pred Ee------CCCC----------------------------------ceeeEEecccccceeEEEEECCCCCEEEEeeCCC
Q 040370 92 WD------GVSA----------------------------------NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS 131 (228)
Q Consensus 92 wd------~~~~----------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 131 (228)
|. +... .++..+.+| ...|.+..|-..++.+++++.|.
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH--~~vV~a~dWL~gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGH--RAVVSACDWLAGGQQMVTASWDR 294 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecc--ccceEehhhhcCcceeeeeeccc
Confidence 96 1110 012233333 67788888999999999999999
Q ss_pred eEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcE
Q 040370 132 TVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAA 211 (228)
Q Consensus 132 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (228)
+..+||+++++.+..+.+ |......++-+|..+.+++++ .|-+.++||.+..-.......+|...|+++.|..+. .
T Consensus 295 TAnlwDVEtge~v~~LtG--Hd~ELtHcstHptQrLVvTsS-rDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~ 370 (481)
T KOG0300|consen 295 TANLWDVETGEVVNILTG--HDSELTHCSTHPTQRLVVTSS-RDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-R 370 (481)
T ss_pred cceeeeeccCceeccccC--cchhccccccCCcceEEEEec-cCceeEeccchhhcceeeeecccccceeEEEEecCC-c
Confidence 999999999999999988 555566777788888777754 589999999996555444458999999999998755 5
Q ss_pred EEEecCCCCEEEeeec
Q 040370 212 FITCGTDRSVRFWKEI 227 (228)
Q Consensus 212 l~s~~~dg~i~vwd~~ 227 (228)
+++|+.|.+|++||++
T Consensus 371 vVSgSDDrTvKvWdLr 386 (481)
T KOG0300|consen 371 VVSGSDDRTVKVWDLR 386 (481)
T ss_pred eeecCCCceEEEeeec
Confidence 8999999999999985
No 102
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.96 E-value=3.8e-27 Score=165.12 Aligned_cols=212 Identities=17% Similarity=0.308 Sum_probs=158.4
Q ss_pred eEEEeecCcceEEEEEeCCC--CEEEEecCCCeEEEEEcccceE-------------EeeeccceeeeccceeeEEeCCC
Q 040370 12 AFRVIQDTHNVRSVSFHPSG--DFLLAGTDHPIAHLYDVNTFQC-------------YLSANVPEISVNGAINQVRYSST 76 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~vw~~~~~~~-------------~~~~~~~~~~~~~~i~~~~~~~~ 76 (228)
..+...|.+.++-+.-++-+ .+.++=+..|.|+||++...-. ...+....+| ...=..++|||-
T Consensus 144 ~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~gh-k~EGy~LdWSp~ 222 (440)
T KOG0302|consen 144 EMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGH-KGEGYGLDWSPI 222 (440)
T ss_pred cccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEeccc-Cccceeeecccc
Confidence 34455788888888887754 4555667889999999854210 0011111223 556688999993
Q ss_pred -CCeEEEEecCCeEEEEeCCCCcee---eEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecce
Q 040370 77 -GGMYVTASKDGAIRLWDGVSANCV---RSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT 151 (228)
Q Consensus 77 -~~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 151 (228)
...+++|..-+.|++|...++.-. ..+..| ...|-.++|+| ....|++|+.||+|+|||+|.+.....+....
T Consensus 223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH--~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kA 300 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGH--TKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKA 300 (440)
T ss_pred cccccccCccccceEeeeeccCceeecCcccccc--ccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeec
Confidence 235889988899999998887532 233343 78899999999 45689999999999999999984433333344
Q ss_pred eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC---cceeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeeec
Q 040370 152 HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT---AEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~ 227 (228)
|..-+..+.|+.... ++++|++||+++|||+|+ ++++..+ ..|..+|+++.|+| +...|+++|.|..|.+||+.
T Consensus 301 h~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~f-k~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 301 HNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATF-KYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred cCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeE-EeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 777889999999888 556677799999999986 4556666 78999999999999 45678889999999999986
Q ss_pred C
Q 040370 228 L 228 (228)
Q Consensus 228 l 228 (228)
+
T Consensus 379 v 379 (440)
T KOG0302|consen 379 V 379 (440)
T ss_pred c
Confidence 3
No 103
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.4e-26 Score=180.75 Aligned_cols=203 Identities=17% Similarity=0.310 Sum_probs=162.3
Q ss_pred CcceEEEEEeCCCCEEEEec--CCCeEEEEEcccce--------EEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe
Q 040370 19 THNVRSVSFHPSGDFLLAGT--DHPIAHLYDVNTFQ--------CYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA 88 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~--~d~~i~vw~~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 88 (228)
...|.+++.+|++..+|+|+ .|+.++||+.+.-- .+.........|.+.|+|+.|+|||++||+|++|+.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 45799999999999999999 89999999875321 111111112234899999999999999999999999
Q ss_pred EEEEeCCC------------------CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecc
Q 040370 89 IRLWDGVS------------------ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA 150 (228)
Q Consensus 89 v~iwd~~~------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 150 (228)
|.||.... .+....+.+| ...|..++|+|++.+|++++.|++|.+|+.++.+.+..+.+
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H--~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~- 169 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH--DSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG- 169 (942)
T ss_pred EEEeeecccCCcccccccccccccceeeEEEEEecC--CCccceeccCCCccEEEEecccceEEEEccccceeeeeeec-
Confidence 99998662 1234455554 88999999999999999999999999999999999999988
Q ss_pred eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEE---------------------------------------
Q 040370 151 THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAK--------------------------------------- 191 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~--------------------------------------- 191 (228)
|...+..+.|.|-|+|+++-+. |++|++|+..+-.....
T Consensus 170 -H~s~VKGvs~DP~Gky~ASqsd-Drtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~ 247 (942)
T KOG0973|consen 170 -HQSLVKGVSWDPIGKYFASQSD-DRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI 247 (942)
T ss_pred -ccccccceEECCccCeeeeecC-CceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee
Confidence 7788999999999999999766 89999998533111100
Q ss_pred ------------eecCCCCCcEEEEeCC-----CCc------------EEEEecCCCCEEEeee
Q 040370 192 ------------WSSNHIGAPRWIEHSP-----AEA------------AFITCGTDRSVRFWKE 226 (228)
Q Consensus 192 ------------~~~~~~~~v~~~~~~~-----~~~------------~l~s~~~dg~i~vwd~ 226 (228)
...+|..++.++.|+| ..+ .+|+||.|++|.||..
T Consensus 248 ~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T 311 (942)
T KOG0973|consen 248 AIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT 311 (942)
T ss_pred EEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence 0247999999999987 112 6789999999999985
No 104
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=5.6e-27 Score=167.84 Aligned_cols=207 Identities=16% Similarity=0.251 Sum_probs=169.6
Q ss_pred EEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEe----e----------eccceeeeccceeeEEeCCCCC
Q 040370 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYL----S----------ANVPEISVNGAINQVRYSSTGG 78 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~----~----------~~~~~~~~~~~i~~~~~~~~~~ 78 (228)
.....|..+|.+++++|+.++.++++.+++|.-|+..+++... . ...+...|...+.+++.+||++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 3445799999999999999999999999999999998876331 1 1111113377899999999999
Q ss_pred eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeE
Q 040370 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQ 158 (228)
Q Consensus 79 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 158 (228)
+|++|+.|..|.||+.++.+.++.+..| ...|.+++|-.....+++++.|+.|++|++.....+.++.+ |...+..
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~gh--r~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyG--Hqd~v~~ 291 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGH--RGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYG--HQDGVLG 291 (479)
T ss_pred EEEecCCCceEEEecCcccchhhccccc--ccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhC--Cccceee
Confidence 9999999999999999999999998887 88999999999888999999999999999998888888877 5566666
Q ss_pred EEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 159 AVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+....-+ .+++.|+.|+++++|++.....+ +..+|.+.+-|++|-. ...+++||.||.|.+|++.
T Consensus 292 IdaL~re-R~vtVGgrDrT~rlwKi~eesql--ifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 292 IDALSRE-RCVTVGGRDRTVRLWKIPEESQL--IFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLL 356 (479)
T ss_pred echhccc-ceEEeccccceeEEEecccccee--eeeCCCCCeeeEEEec-ccceeeccCCceEEEeeec
Confidence 6554444 45556666999999999443333 3368899999999964 5579999999999999863
No 105
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.2e-27 Score=166.99 Aligned_cols=215 Identities=12% Similarity=0.163 Sum_probs=167.2
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccc---------------------------eE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTF---------------------------QC 53 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~---------------------------~~ 53 (228)
|||+.... ....+..|.+.|+.|++.. ..++++++|.+|+.|.++.. +.
T Consensus 93 iWnlsqR~--~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~ 168 (433)
T KOG0268|consen 93 IWNLSQRE--CIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQ 168 (433)
T ss_pred EEehhhhh--hhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCce
Confidence 57777443 3445557999999999975 67888888999999974321 10
Q ss_pred Eeeec--------cceeeeccceeeEEeCCC-CCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEE
Q 040370 54 YLSAN--------VPEISVNGAINQVRYSST-GGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFV 124 (228)
Q Consensus 54 ~~~~~--------~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 124 (228)
+.... ..... ...|.++.|+|- ...|++|+.|+.|.+||++++.+++.+.. ...-+.++|+|.+-.+
T Consensus 169 i~IWD~~R~~Pv~smswG-~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~---~mRTN~IswnPeafnF 244 (433)
T KOG0268|consen 169 IDIWDEQRDNPVSSMSWG-ADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL---TMRTNTICWNPEAFNF 244 (433)
T ss_pred eeecccccCCccceeecC-CCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee---eccccceecCccccce
Confidence 00000 00011 346788999995 45777888999999999999999888776 4566889999988889
Q ss_pred EEeeCCCeEEEEEccCCe-eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEE
Q 040370 125 LSCGKDSTVKLWEVSSGR-LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWI 203 (228)
Q Consensus 125 ~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~ 203 (228)
++|++|..++.||++..+ ++....+ |...+..+.|+|.|..+++++. |.+|+||..+.+.........-...|.++
T Consensus 245 ~~a~ED~nlY~~DmR~l~~p~~v~~d--hvsAV~dVdfsptG~Efvsgsy-DksIRIf~~~~~~SRdiYhtkRMq~V~~V 321 (433)
T KOG0268|consen 245 VAANEDHNLYTYDMRNLSRPLNVHKD--HVSAVMDVDFSPTGQEFVSGSY-DKSIRIFPVNHGHSRDIYHTKRMQHVFCV 321 (433)
T ss_pred eeccccccceehhhhhhcccchhhcc--cceeEEEeccCCCcchhccccc-cceEEEeecCCCcchhhhhHhhhheeeEE
Confidence 999999999999999754 4455555 7889999999999999988666 89999999988776555533445679999
Q ss_pred EeCCCCcEEEEecCCCCEEEeee
Q 040370 204 EHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 204 ~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
.|+-|.+++++||.|+.|++|..
T Consensus 322 k~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 322 KYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred EEeccccEEEecCCCcceeeeec
Confidence 99999999999999999999974
No 106
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.6e-27 Score=178.46 Aligned_cols=205 Identities=18% Similarity=0.316 Sum_probs=172.7
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC---CCCeEEEEecCCeEEEEe
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS---TGGMYVTASKDGAIRLWD 93 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~v~iwd 93 (228)
+....+++++.+|++++||+|..-|.++||++.+.+...... .|...|.|+.|+. ..++|++++.|..|+|+|
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e----AHesEilcLeyS~p~~~~kLLASasrdRlIHV~D 532 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFME----AHESEILCLEYSFPVLTNKLLASASRDRLIHVYD 532 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhee----cccceeEEEeecCchhhhHhhhhccCCceEEEEe
Confidence 456689999999999999999999999999999866544333 2388999999985 356899999999999999
Q ss_pred CCCC-ceeeEEecc--------------------------------------------c---ccceeEEEEECCCCCEEE
Q 040370 94 GVSA-NCVRSIVGA--------------------------------------------H---GTAEATSANFTKDQRFVL 125 (228)
Q Consensus 94 ~~~~-~~~~~~~~~--------------------------------------------~---~~~~i~~~~~~~~~~~l~ 125 (228)
+... .+++++..| + ....++.++..|..++++
T Consensus 533 v~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~ 612 (1080)
T KOG1408|consen 533 VKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVV 612 (1080)
T ss_pred cccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEE
Confidence 6532 111111111 0 145678888899999999
Q ss_pred EeeCCCeEEEEEccCCeeEEEEecce-eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEE
Q 040370 126 SCGKDSTVKLWEVSSGRLVKQYLGAT-HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIE 204 (228)
Q Consensus 126 ~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 204 (228)
+++.|+.|+|||+.+++..+.|++.. +......+...|.+.|++++++ |.++.++|..+++++.+. .+|...|+.+.
T Consensus 613 t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs-dktl~~~Df~sgEcvA~m-~GHsE~VTG~k 690 (1080)
T KOG1408|consen 613 TVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS-DKTLCFVDFVSGECVAQM-TGHSEAVTGVK 690 (1080)
T ss_pred EEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeec-CCceEEEEeccchhhhhh-cCcchheeeee
Confidence 99999999999999999999998754 4467788999999999999988 799999999999999998 79999999999
Q ss_pred eCCCCcEEEEecCCCCEEEeeec
Q 040370 205 HSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 205 ~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
|.+|-+.|++.+.||.|.||.+.
T Consensus 691 F~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 691 FLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred ecccchhheeecCCceEEEEECc
Confidence 99999999999999999999975
No 107
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=6.1e-26 Score=173.46 Aligned_cols=194 Identities=24% Similarity=0.415 Sum_probs=168.7
Q ss_pred cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA 97 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 97 (228)
+...+.+..|. ..++++++.+++|++|+..++..+... ..+| .+.|.++++...+.++++|+.|.++++||..++
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~--l~GH-~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTR--LVGH-FGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEee--ccCC-CCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence 56788899887 678999999999999999998866541 2344 899999999877889999999999999999999
Q ss_pred ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCe
Q 040370 98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNE 177 (228)
Q Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 177 (228)
++...+.+| ...+.++... ..++++|+.|.+|++|++.++..+..+.+ |...+.++..+ +.++++++. |+.
T Consensus 282 ~C~~~l~gh--~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~--h~~~V~~v~~~--~~~lvsgs~-d~~ 352 (537)
T KOG0274|consen 282 ECTHSLQGH--TSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRG--HTGPVNCVQLD--EPLLVSGSY-DGT 352 (537)
T ss_pred cEEEEecCC--CceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecc--ccccEEEEEec--CCEEEEEec-Cce
Confidence 999999987 6777777654 56788899999999999999999999987 78888888876 666776555 899
Q ss_pred EEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 178 IVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 178 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
|++||..+++++..+ .+|...|.++.+.+. ..+++|+.|+.|++||+.
T Consensus 353 v~VW~~~~~~cl~sl-~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~ 400 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSL-SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLR 400 (537)
T ss_pred EEEEEhhhceeeeee-cCCcceEEEEEecCc-ceEEeeeeccceEeecCC
Confidence 999999999999999 789999999988765 899999999999999975
No 108
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.1e-26 Score=166.41 Aligned_cols=199 Identities=18% Similarity=0.296 Sum_probs=165.5
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS 96 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 96 (228)
.|...+.+++.+||+++||+|+.|..|.||+.++.+.+..+. +| .+.|.+++|-.....+++++.|+.|++|+++.
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~---gh-r~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFK---GH-RGAVSSLAFRKGTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhccc---cc-ccceeeeeeecCccceeeeecCCceEEEehhH
Confidence 799999999999999999999999999999999998776644 23 89999999988888899999999999999999
Q ss_pred CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370 97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN 176 (228)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 176 (228)
...+.++.+| ...|.++....-++.+-+|+.|+++++|++... ....+.+ +...+-+++|-.+..+ ++ |++||
T Consensus 276 ~s~vetlyGH--qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg--~~~sidcv~~In~~Hf-vs-GSdnG 348 (479)
T KOG0299|consen 276 LSYVETLYGH--QDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRG--GEGSIDCVAFINDEHF-VS-GSDNG 348 (479)
T ss_pred hHHHHHHhCC--ccceeeechhcccceEEeccccceeEEEecccc-ceeeeeC--CCCCeeeEEEecccce-ee-ccCCc
Confidence 9888888887 778889888777777777889999999999543 2333444 4556667777655443 44 56689
Q ss_pred eEEEEEcCCcceeEEeecCCC-----------CCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 177 EIVIWDALTAEKVAKWSSNHI-----------GAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 177 ~i~i~d~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
.|.+|++.+.+++.....+|. ..|++++..|...++++|+.+|.|++|.+
T Consensus 349 ~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i 409 (479)
T KOG0299|consen 349 SIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKI 409 (479)
T ss_pred eEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEe
Confidence 999999999998887754442 26889999999999999999999999986
No 109
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.2e-28 Score=185.17 Aligned_cols=204 Identities=22% Similarity=0.400 Sum_probs=183.4
Q ss_pred EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEe
Q 040370 14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD 93 (228)
Q Consensus 14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd 93 (228)
+...|...+.++..-..++.+++|+.|..+-+|.+.....+..+. +| ..+|.++.|++...+|++|+.+|+|++||
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~---~h-espIeSl~f~~~E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLT---GH-ESPIESLTFDTSERLLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheee---cc-CCcceeeecCcchhhhcccccCCceeeee
Confidence 344688889999887788999999999999999987766555432 33 89999999999999999999999999999
Q ss_pred CCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370 94 GVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE 173 (228)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
++..+.++.+.+| ...+.++.|+|-+.+.++|+.|..+++||.+...+...+.+ |...+..+.|+|+|++++.++.
T Consensus 99 leeAk~vrtLtgh--~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s--~~~vv~~l~lsP~Gr~v~~g~e 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGH--LLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS--HTRVVDVLRLSPDGRWVASGGE 174 (825)
T ss_pred hhhhhhhhhhhcc--ccCcceeeeccceEEeccccccccceehhhhccCceeeecC--CcceeEEEeecCCCceeeccCC
Confidence 9999999999887 77899999999999999999999999999998888888877 7778888999999999998766
Q ss_pred CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 174 PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 174 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
|..+++||...|+....+ ..|.+.+..+.|+|..-++++||.|+++++||+.
T Consensus 175 -d~tvki~d~~agk~~~ef-~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 175 -DNTVKIWDLTAGKLSKEF-KSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred -cceeeeeccccccccccc-ccccccccccccCchhhhhccCCCCceeeeeccc
Confidence 899999999999999998 7899999999999999999999999999999975
No 110
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=7.5e-26 Score=154.73 Aligned_cols=201 Identities=15% Similarity=0.136 Sum_probs=155.7
Q ss_pred EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEe
Q 040370 14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD 93 (228)
Q Consensus 14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd 93 (228)
....|..++.+++|.+ ...+++|+-||.|+.+|+.++..... +.|..+|.|+.+++....+++|+.|++|++||
T Consensus 49 ~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~i-----gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD 122 (323)
T KOG1036|consen 49 LKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQI-----GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWD 122 (323)
T ss_pred hheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcceee-----ccCCCceEEEEeeccCCeEEEcccCccEEEEe
Confidence 3456899999999986 56789999999999999998774332 23388999999999888999999999999999
Q ss_pred CCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370 94 GVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE 173 (228)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
.++......+.. ...|.++... ++.|+.|+.|..+.+||+++.....+.....-...+.++++.|++.-.++++-
T Consensus 123 ~R~~~~~~~~d~---~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi 197 (323)
T KOG1036|consen 123 PRNKVVVGTFDQ---GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI 197 (323)
T ss_pred cccccccccccc---CceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee
Confidence 998555555544 4478887665 77899999999999999998776655444445566778888887666565444
Q ss_pred CCCeEEEEEcCCc----ceeEEeecCC---------CCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 174 PSNEIVIWDALTA----EKVAKWSSNH---------IGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 174 ~d~~i~i~d~~~~----~~~~~~~~~~---------~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
||.|.+=.+... +....+ ..| -.+|++++|+|-...|+|||.||.|.+||+.
T Consensus 198 -eGRVavE~~d~s~~~~skkyaF-kCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 198 -EGRVAVEYFDDSEEAQSKKYAF-KCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred -cceEEEEccCCchHHhhhceeE-EeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCc
Confidence 698887655444 222222 222 2379999999998999999999999999974
No 111
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=9.7e-27 Score=166.63 Aligned_cols=212 Identities=16% Similarity=0.183 Sum_probs=164.5
Q ss_pred eEEEeecCcceEEEEEeCCC--CEEEEecCCCeEEEEEcccceEE-eeeccceeeeccceeeEEeCC-CCCeEEEEecCC
Q 040370 12 AFRVIQDTHNVRSVSFHPSG--DFLLAGTDHPIAHLYDVNTFQCY-LSANVPEISVNGAINQVRYSS-TGGMYVTASKDG 87 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg 87 (228)
.....-+..+|++++|+|.. +.+|+|..-|+|-+||+...+.. ........| ..+|.++.|+| +...+++.|.||
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~h-s~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPH-SGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccC-CccccceEecCCChhheeeeccCc
Confidence 33444588999999999943 68889999999999999533221 112222233 88999999999 456899999999
Q ss_pred eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee-EEEEecceeeeeeeEEEECCCCc
Q 040370 88 AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL-VKQYLGATHTQLRFQAVFNDTEE 166 (228)
Q Consensus 88 ~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 166 (228)
+|++-|++.+.....+..........++.|+.+...++.+..=|...+||++++.. ...+.. |...+..+.++|...
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l--h~kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL--HKKKITSVALNPVCP 335 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh--hhcccceeecCCCCc
Confidence 99999998765433333322255678889998888888888888999999998665 334444 556899999999999
Q ss_pred EEEEeeCCCCeEEEEEcCCcceeEE---eecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 167 FVLSIDEPSNEIVIWDALTAEKVAK---WSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 167 ~~~~~~~~d~~i~i~d~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
+++++++.|++.+|||+|....... ....|...|.+..|||.+..|+|.+.|..|+|||.
T Consensus 336 ~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 336 WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence 9999999999999999987543321 12479999999999998888999999999999996
No 112
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.1e-26 Score=160.12 Aligned_cols=217 Identities=20% Similarity=0.312 Sum_probs=174.1
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcc------c--------c---------------
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVN------T--------F--------------- 51 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~------~--------~--------------- 51 (228)
||.+. ....+.+..+|.+.|++++|++.+.++++++.|++..||... . +
T Consensus 174 iWs~E--sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d 251 (481)
T KOG0300|consen 174 IWSLE--SGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTD 251 (481)
T ss_pred EEeec--cccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccc
Confidence 34444 334556677999999999999999999999999999999721 0 0
Q ss_pred --------eEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCE
Q 040370 52 --------QCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRF 123 (228)
Q Consensus 52 --------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 123 (228)
.....+....+ |.+.|.+..|...|+.+++++.|.+-.+||+++++.+..+.+| ..+.+.++-+|..++
T Consensus 252 ~~~~sD~~tiRvPl~~ltg-H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGH--d~ELtHcstHptQrL 328 (481)
T KOG0300|consen 252 SSEKSDGHTIRVPLMRLTG-HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGH--DSELTHCSTHPTQRL 328 (481)
T ss_pred cccccCCceeeeeeeeeec-cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCc--chhccccccCCcceE
Confidence 00011111223 3788899999999999999999999999999999999999987 678899999999999
Q ss_pred EEEeeCCCeEEEEEccCC-eeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEE
Q 040370 124 VLSCGKDSTVKLWEVSSG-RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRW 202 (228)
Q Consensus 124 l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~ 202 (228)
+++.+.|.+.++||++.. ..+..|++ |...+++..|..+.+ +++|++|.+|++||+++....... ....++++.
T Consensus 329 VvTsSrDtTFRLWDFReaI~sV~VFQG--HtdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsplAT-IRtdS~~NR 403 (481)
T KOG0300|consen 329 VVTSSRDTTFRLWDFREAIQSVAVFQG--HTDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPLAT-IRTDSPANR 403 (481)
T ss_pred EEEeccCceeEeccchhhcceeeeecc--cccceeEEEEecCCc--eeecCCCceEEEeeeccccCccee-eecCCccce
Confidence 999999999999999853 34566777 778888998887655 345677999999999988765444 245788999
Q ss_pred EEeCCCCcEEEEecCCCCEEEeeec
Q 040370 203 IEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 203 ~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
++.+..+..++.--.+..|++||+.
T Consensus 404 vavs~g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 404 VAVSKGHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred eEeecCCceEEeccCCceEEEEecC
Confidence 9999988899988888999999974
No 113
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2e-26 Score=171.49 Aligned_cols=220 Identities=17% Similarity=0.237 Sum_probs=176.9
Q ss_pred CCcCCccccceeEEEeecCcceEEEEE-eCCCCEEEEecCCCeEEEEEcccceE--E------eeeccceeeeccceeeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSF-HPSGDFLLAGTDHPIAHLYDVNTFQC--Y------LSANVPEISVNGAINQV 71 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~vw~~~~~~~--~------~~~~~~~~~~~~~i~~~ 71 (228)
+|+......-..-.+..|.+.|.|+++ .++...+|+|+-|+.|.+||++++.. + .......++ ...|.++
T Consensus 99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~-k~siYSL 177 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP-KDSIYSL 177 (735)
T ss_pred EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC-ccceeee
Confidence 355554432222334479999999999 77899999999999999999997732 1 111122233 7889999
Q ss_pred EeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce
Q 040370 72 RYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT 151 (228)
Q Consensus 72 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 151 (228)
+.++.|..+++|+..+.+++||.++++.+..+.+| ...|.++..++||..+++++.||+|++||+...+++.++..
T Consensus 178 A~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGH--TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v-- 253 (735)
T KOG0308|consen 178 AMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH--TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV-- 253 (735)
T ss_pred ecCCcceEEEecCcccceEEeccccccceeeeecc--ccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe--
Confidence 99999999999999999999999999999999976 78999999999999999999999999999999999999877
Q ss_pred eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 152 HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
|...+.++..+|+-..+++++. ||.|..=|+++......+ .....+|..+..+...+-+-++..|+.|+-|...
T Consensus 254 H~e~VWaL~~~~sf~~vYsG~r-d~~i~~Tdl~n~~~~tli-ck~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 254 HKEGVWALQSSPSFTHVYSGGR-DGNIYRTDLRNPAKSTLI-CKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred ccCceEEEeeCCCcceEEecCC-CCcEEecccCCchhheEe-ecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 5666888888899899988666 899999999986433333 3455678888887655556777889999999764
No 114
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.5e-26 Score=162.63 Aligned_cols=201 Identities=15% Similarity=0.230 Sum_probs=158.9
Q ss_pred ceEEEEEeC-------CCCEEEEecCCCeEEEEEcccceEEeee-----------------ccceeeeccceeeEEeCCC
Q 040370 21 NVRSVSFHP-------SGDFLLAGTDHPIAHLYDVNTFQCYLSA-----------------NVPEISVNGAINQVRYSST 76 (228)
Q Consensus 21 ~v~~~~~~~-------~~~~l~~~~~d~~i~vw~~~~~~~~~~~-----------------~~~~~~~~~~i~~~~~~~~ 76 (228)
...|++|.. .|+++|.|+.|..|.|||+.-...+... .....+|...|.++.|+..
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 345666643 3689999999999999998632211110 0111234778889999874
Q ss_pred -CCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeE-EEEecceee
Q 040370 77 -GGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLV-KQYLGATHT 153 (228)
Q Consensus 77 -~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~-~~~~~~~~~ 153 (228)
.+.||+||.|.+|++||+.++++...+..+ ...|.++.|+| ...+|++|+.|+++.+.|.|..... ..++ -.
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~--~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk---~~ 329 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSITHH--GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK---FD 329 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehhhc--CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE---ec
Confidence 568999999999999999999999988744 88999999999 6678999999999999999953322 2222 34
Q ss_pred eeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCc-ceeEEeecCCCCCcEEEEeCCC-CcEEEEecCCCCEEEeeec
Q 040370 154 QLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA-EKVAKWSSNHIGAPRWIEHSPA-EAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~ 227 (228)
..+-.+.|.|.....+.++.+||.++-+|+|+. +++.++ ..|.++|.++++++. ..+++|++.|+.|++|++.
T Consensus 330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~-~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~ 404 (463)
T KOG0270|consen 330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL-KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFD 404 (463)
T ss_pred cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEE-EeccCCcceEEecCCCCcceeeccccceEEEEeec
Confidence 557788999999888888888999999999987 566666 799999999999884 5689999999999999974
No 115
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=7.3e-27 Score=169.61 Aligned_cols=210 Identities=13% Similarity=0.252 Sum_probs=170.3
Q ss_pred eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce---EEeeeccceeeeccceeeEEeCCCCCeEEEEecCC
Q 040370 11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ---CYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG 87 (228)
Q Consensus 11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 87 (228)
+.+..+.|.+-|.++.++...+++++|+. |.|+|||+.... .+..+.... ....|.++...|+|+.|++|++-.
T Consensus 411 rq~~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~--rdnyiRSckL~pdgrtLivGGeas 487 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLN--RDNYIRSCKLLPDGRTLIVGGEAS 487 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccC--cccceeeeEecCCCceEEeccccc
Confidence 44566789999999999999999999985 789999997543 222222211 156799999999999999999999
Q ss_pred eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370 88 AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF 167 (228)
Q Consensus 88 ~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (228)
++.|||+...............-...+++.+||.+..+++..||.|.|||+.+...++.+++ |.....++..+++|..
T Consensus 488 tlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqG--htDGascIdis~dGtk 565 (705)
T KOG0639|consen 488 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQG--HTDGASCIDISKDGTK 565 (705)
T ss_pred eeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccC--CCCCceeEEecCCCce
Confidence 99999998766544443332245677899999999999999999999999999999999998 6777888999999999
Q ss_pred EEEeeCCCCeEEEEEcCCcceeEEe---------------------------------------ecCCCCCcEEEEeCCC
Q 040370 168 VLSIDEPSNEIVIWDALTAEKVAKW---------------------------------------SSNHIGAPRWIEHSPA 208 (228)
Q Consensus 168 ~~~~~~~d~~i~i~d~~~~~~~~~~---------------------------------------~~~~~~~v~~~~~~~~ 208 (228)
+-++|- |+++|.||++++..+... ...|.+.|.++.|.+.
T Consensus 566 lWTGGl-DntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~c 644 (705)
T KOG0639|consen 566 LWTGGL-DNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYC 644 (705)
T ss_pred eecCCC-ccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEeccc
Confidence 998666 899999999887533211 1247888999999999
Q ss_pred CcEEEEecCCCCEEEeee
Q 040370 209 EAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 209 ~~~l~s~~~dg~i~vwd~ 226 (228)
|+++++.|.|+.+..|..
T Consensus 645 GkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 645 GKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred CceeeecCchhhhhhccC
Confidence 999999999999999975
No 116
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.1e-25 Score=167.06 Aligned_cols=192 Identities=19% Similarity=0.330 Sum_probs=162.6
Q ss_pred EEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEE
Q 040370 24 SVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSI 103 (228)
Q Consensus 24 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 103 (228)
-++|+ ..+.+|+|.. ..|++|+..+++........ ...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+
T Consensus 182 lldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~----~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~ 255 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFG----EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL 255 (484)
T ss_pred Hhhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecC----CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc
Confidence 36677 4556776664 57999999998855444432 678999999999999999999999999999999988888
Q ss_pred ecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEc
Q 040370 104 VGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDA 183 (228)
Q Consensus 104 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~ 183 (228)
..+| ...|.+++|+ +..+.+|+.|+.|..+|++..+.... ....|...++.+.|++++.+++++|. |+.+.|||.
T Consensus 256 ~~~h-~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~~~lASGgn-DN~~~Iwd~ 330 (484)
T KOG0305|consen 256 RGSH-ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDGNQLASGGN-DNVVFIWDG 330 (484)
T ss_pred cCCc-CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEECCCCCeeccCCC-ccceEeccC
Confidence 8743 8899999998 67899999999999999998877666 23448889999999999999988665 899999999
Q ss_pred CCcceeEEeecCCCCCcEEEEeCC-CCcEEEEec--CCCCEEEeeec
Q 040370 184 LTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCG--TDRSVRFWKEI 227 (228)
Q Consensus 184 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~--~dg~i~vwd~~ 227 (228)
...++...+ ..|...|.+++|+| ...+||+|+ .|++|++||..
T Consensus 331 ~~~~p~~~~-~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~ 376 (484)
T KOG0305|consen 331 LSPEPKFTF-TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN 376 (484)
T ss_pred CCccccEEE-eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC
Confidence 888888887 79999999999999 677899876 69999999974
No 117
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.3e-25 Score=170.05 Aligned_cols=201 Identities=15% Similarity=0.189 Sum_probs=170.3
Q ss_pred cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA 97 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 97 (228)
+...|.+++. .+.+|++|+.+++|.+|.+.+++.-..+... .-++++++|+.+|++++.|+.|-.|++-++...
T Consensus 55 ~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rf----tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~ 128 (933)
T KOG1274|consen 55 SGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILARF----TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS 128 (933)
T ss_pred cCceeEEEee--cccceEEeeccceEEEeeCCCCCccceeeee----eccceEEEEecCCcEEEeecCceeEEEEecccc
Confidence 6777888876 5669999999999999999987754333322 567999999999999999999999999999999
Q ss_pred ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce------eeeeeeEEEECCCCcEEEEe
Q 040370 98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT------HTQLRFQAVFNDTEEFVLSI 171 (228)
Q Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 171 (228)
.....+.+| ..+|.++.|+|++++||+.+.||.|++||+.++....++.+-. ....+..++|+|++..+++.
T Consensus 129 s~~~~lrgh--~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~ 206 (933)
T KOG1274|consen 129 SQEKVLRGH--DAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP 206 (933)
T ss_pred chheeeccc--CCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEee
Confidence 888888887 8899999999999999999999999999999887766654321 24567789999998888877
Q ss_pred eCCCCeEEEEEcCCcceeEEeecCCC-CCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 172 DEPSNEIVIWDALTAEKVAKWSSNHI-GAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 172 ~~~d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+. |+.|.+|+..+.+....+...+. ..+..++|+|+|+|||+++.||.|.|||..
T Consensus 207 ~~-d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 207 PV-DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred cc-CCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 77 79999999999888887754443 348999999999999999999999999964
No 118
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-25 Score=160.04 Aligned_cols=202 Identities=16% Similarity=0.196 Sum_probs=162.0
Q ss_pred ecCcceEEEEEeCC-CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCeEEEEecCCeEEEEeC
Q 040370 17 QDTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGMYVTASKDGAIRLWDG 94 (228)
Q Consensus 17 ~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~ 94 (228)
+|+..|.+++|+.. .+.||+|+.|.+|++||+.++++...+. ||.+.|.++.|+| ....|++|+.|++|.+.|.
T Consensus 241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~----~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT----HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDC 316 (463)
T ss_pred cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh----hcCCceeEEEecCCCceEEEeccccceEEeeec
Confidence 68999999999884 5688999999999999999999887765 4489999999999 4679999999999999999
Q ss_pred CCC-ceeeEEecccccceeEEEEECCC-CCEEEEeeCCCeEEEEEccCC-eeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370 95 VSA-NCVRSIVGAHGTAEATSANFTKD-QRFVLSCGKDSTVKLWEVSSG-RLVKQYLGATHTQLRFQAVFNDTEEFVLSI 171 (228)
Q Consensus 95 ~~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
+.. ..-..++. .+.|-.++|.|. ...++++..||+++-+|+|+. +++.+++. |...+..+++++..+.++++
T Consensus 317 R~~~~s~~~wk~---~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A--Hd~~ISgl~~n~~~p~~l~t 391 (463)
T KOG0270|consen 317 RDPSNSGKEWKF---DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA--HDDEISGLSVNIQTPGLLST 391 (463)
T ss_pred cCccccCceEEe---ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEe--ccCCcceEEecCCCCcceee
Confidence 943 33334443 567889999994 457888889999999999986 67777766 77899999999999999999
Q ss_pred eCCCCeEEEEEcCCcceeEEee-cCCCCCcEEEEeCCCC-cEEEEecCCCCEEEeeec
Q 040370 172 DEPSNEIVIWDALTAEKVAKWS-SNHIGAPRWIEHSPAE-AAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 172 ~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~ 227 (228)
++.|+.+++|++....+..... .-.-+...|.++.|+- -.++.||..+.++|||+.
T Consensus 392 ~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 392 ASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred ccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence 9999999999987554433221 1122346667777754 467788888889999975
No 119
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8e-25 Score=149.89 Aligned_cols=207 Identities=17% Similarity=0.258 Sum_probs=153.7
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC--CCCeEEEEecCCeEEEEeC
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS--TGGMYVTASKDGAIRLWDG 94 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~iwd~ 94 (228)
+|.+-|.++.|.+.|+++|+|+.|++++|||.++..........-..|.+.|..+.|.+ -|+.+|+++.|+++.||.-
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 68889999999999999999999999999997665433333333334488999999965 5899999999999999974
Q ss_pred CCC-------c--eeeEEecccccceeEEEEECC--CCCEEEEeeCCCeEEEEEccCCeeE-------------------
Q 040370 95 VSA-------N--CVRSIVGAHGTAEATSANFTK--DQRFVLSCGKDSTVKLWEVSSGRLV------------------- 144 (228)
Q Consensus 95 ~~~-------~--~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~------------------- 144 (228)
... + ...++.. ....|+.+.|.| -|-.|++++.||.+|||+......+
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~D--srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVD--SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred cccccccccceeEEEEEeec--CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 211 1 1223333 377899999999 5678999999999999975321000
Q ss_pred ---------------------------------EEE-------------ecceeeeeeeEEEECCCC---cEEEEeeCCC
Q 040370 145 ---------------------------------KQY-------------LGATHTQLRFQAVFNDTE---EFVLSIDEPS 175 (228)
Q Consensus 145 ---------------------------------~~~-------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~d 175 (228)
..+ ....+..++..++|.|+- -++++.+..|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 000 011245677888888863 3566667778
Q ss_pred CeEEEEEcCCcc--------------------eeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 176 NEIVIWDALTAE--------------------KVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 176 ~~i~i~d~~~~~--------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
| |+||.++... .+..+ ..|.++|..+.|+-.|..|++.|.||.|++|+..
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~-~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL-DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeec-cCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 8 9999987311 12222 6899999999999999999999999999999753
No 120
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=5.5e-25 Score=150.29 Aligned_cols=207 Identities=13% Similarity=0.124 Sum_probs=154.7
Q ss_pred CcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC--e
Q 040370 2 FDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG--M 79 (228)
Q Consensus 2 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~ 79 (228)
|+++............|.++|.+++|+.+|..+++|+.|+.+++||+.+++....- .|.++|.++.|-+... .
T Consensus 55 wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~-----~Hd~pvkt~~wv~~~~~~c 129 (347)
T KOG0647|consen 55 WEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVA-----AHDAPVKTCHWVPGMNYQC 129 (347)
T ss_pred EEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeee-----ecccceeEEEEecCCCcce
Confidence 55554322222334468999999999999999999999999999999998653322 2389999999987554 8
Q ss_pred EEEEecCCeEEEEeCCCCceeeEEeccc---------------------------------------ccceeEEEEECCC
Q 040370 80 YVTASKDGAIRLWDGVSANCVRSIVGAH---------------------------------------GTAEATSANFTKD 120 (228)
Q Consensus 80 l~~~~~dg~v~iwd~~~~~~~~~~~~~~---------------------------------------~~~~i~~~~~~~~ 120 (228)
|+|||.|.+|+.||++...++..+.... -+-.+.|++..++
T Consensus 130 l~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d 209 (347)
T KOG0647|consen 130 LVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQD 209 (347)
T ss_pred eEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEec
Confidence 9999999999999999877766654321 1224566666666
Q ss_pred CCEEEEeeCCCeEEEEEccCC--eeEEEEeccee-------eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEE
Q 040370 121 QRFVLSCGKDSTVKLWEVSSG--RLVKQYLGATH-------TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAK 191 (228)
Q Consensus 121 ~~~l~~~~~d~~i~~wd~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~ 191 (228)
....+.|+-+|.+.+-.+..+ +.-..++.|.. --.+..++|+|....+++.|+ ||++.+||-.....+..
T Consensus 210 ~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGs-DGtf~FWDkdar~kLk~ 288 (347)
T KOG0647|consen 210 KDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGS-DGTFSFWDKDARTKLKT 288 (347)
T ss_pred CCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecC-CceEEEecchhhhhhhc
Confidence 666677777777777777665 33333443321 235667899998888888888 89999999877777766
Q ss_pred eecCCCCCcEEEEeCCCCcEEEEe
Q 040370 192 WSSNHIGAPRWIEHSPAEAAFITC 215 (228)
Q Consensus 192 ~~~~~~~~v~~~~~~~~~~~l~s~ 215 (228)
. ..|..+|++..|+.+|.+++-+
T Consensus 289 s-~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 289 S-ETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred c-CcCCCccceeEecCCCCEEEEE
Confidence 6 6899999999999999988754
No 121
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=1.3e-23 Score=153.40 Aligned_cols=198 Identities=17% Similarity=0.192 Sum_probs=149.0
Q ss_pred cceEEEEEeCCCCEEEEe-cCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC-eEEEEeCCCC
Q 040370 20 HNVRSVSFHPSGDFLLAG-TDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG-AIRLWDGVSA 97 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~v~iwd~~~~ 97 (228)
..+..++|+|+++.++++ ..++.+++||+.+.+.+..... ...+.+++|+|+++.+++++.++ .+.+||.+++
T Consensus 73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-----~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~ 147 (300)
T TIGR03866 73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-----GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY 147 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-----CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 345788999999877654 5689999999998776554432 23467899999999999888765 5677899887
Q ss_pred ceeeEEecccccceeEEEEECCCCCEEEEe-eCCCeEEEEEccCCeeEEEEecce-----eeeeeeEEEECCCCcEEEEe
Q 040370 98 NCVRSIVGAHGTAEATSANFTKDQRFVLSC-GKDSTVKLWEVSSGRLVKQYLGAT-----HTQLRFQAVFNDTEEFVLSI 171 (228)
Q Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 171 (228)
+....... ......++|+|++++++.+ ..++.|++||+++++.+..+.... .......+.++|++++++++
T Consensus 148 ~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 148 EIVDNVLV---DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred eEEEEEEc---CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence 76655443 2345678999999988544 568999999999988766654211 11123457889999987766
Q ss_pred eCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEe-cCCCCEEEeeec
Q 040370 172 DEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITC-GTDRSVRFWKEI 227 (228)
Q Consensus 172 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~ 227 (228)
...++.+.+||+++++...... +...+.+++|+|++++|+++ +.+|.|++||+.
T Consensus 225 ~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 225 LGPANRVAVVDAKTYEVLDYLL--VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred cCCCCeEEEEECCCCcEEEEEE--eCCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 5556889999999888766552 34578999999999999876 569999999974
No 122
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=2.3e-25 Score=148.66 Aligned_cols=177 Identities=19% Similarity=0.322 Sum_probs=151.6
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
|||++.+.. ++.++.+|++.|+.+-|....+.|++++.|++|++||..++..++.+.. +.+|+++..+++|+++
T Consensus 126 vfdln~p~A-pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-----~s~VtSlEvs~dG~il 199 (334)
T KOG0278|consen 126 VFDLNRPKA-PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-----NSPVTSLEVSQDGRIL 199 (334)
T ss_pred hhhccCCCC-CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-----CCCCcceeeccCCCEE
Confidence 466666543 4556779999999999999888999999999999999999998888776 6789999999999866
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV 160 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
.++ ..+.|..||..+...++.+.. +..|.+..++|+...+++|+.|..++.||..+++.+..+ ...|..++.++.
T Consensus 200 Tia-~gssV~Fwdaksf~~lKs~k~---P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVr 274 (334)
T KOG0278|consen 200 TIA-YGSSVKFWDAKSFGLLKSYKM---PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVR 274 (334)
T ss_pred EEe-cCceeEEeccccccceeeccC---ccccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEE
Confidence 554 567899999999999988877 668899999999999999999999999999999998886 233888999999
Q ss_pred ECCCCcEEEEeeCCCCeEEEEEcCCccee
Q 040370 161 FNDTEEFVLSIDEPSNEIVIWDALTAEKV 189 (228)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~ 189 (228)
|+|+|...++ |++||+|++|....++..
T Consensus 275 FSPdGE~yAs-GSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 275 FSPDGELYAS-GSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ECCCCceeec-cCCCceEEEEEecCCCch
Confidence 9999998776 566999999998766554
No 123
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=8e-25 Score=150.56 Aligned_cols=202 Identities=18% Similarity=0.260 Sum_probs=157.7
Q ss_pred eecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC
Q 040370 16 IQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV 95 (228)
Q Consensus 16 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~ 95 (228)
+.+.. ..|+.|++.|.+||+|+.||.|.|||+.+......+ ..| ..+|++++||++|+.|+|+|.|..|.+||+.
T Consensus 21 ld~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l---saH-~~pi~sl~WS~dgr~LltsS~D~si~lwDl~ 95 (405)
T KOG1273|consen 21 LDNPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML---SAH-VRPITSLCWSRDGRKLLTSSRDWSIKLWDLL 95 (405)
T ss_pred ccCCc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhh---hcc-ccceeEEEecCCCCEeeeecCCceeEEEecc
Confidence 34444 889999999999999999999999999987643322 233 8899999999999999999999999999999
Q ss_pred CCceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecce---eeeeeeEEEECCCCcEEEEe
Q 040370 96 SANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT---HTQLRFQAVFNDTEEFVLSI 171 (228)
Q Consensus 96 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 171 (228)
.|.+++.+.. ..+|....|+| +.+.+++.-.+..-.+-++..++.. .+.... .........|.+.|++++++
T Consensus 96 ~gs~l~rirf---~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitG 171 (405)
T KOG1273|consen 96 KGSPLKRIRF---DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITG 171 (405)
T ss_pred CCCceeEEEc---cCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEe
Confidence 9999998877 77999999999 3344444444555566666542211 111111 11222334588999999998
Q ss_pred eCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 172 DEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 172 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.+ .|.+.++|..+.+++..+.......|.++.++..|+.|+.-+.|..|+.|++.
T Consensus 172 ts-KGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 172 TS-KGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred cC-cceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 77 59999999999999888744444789999999999999999999999999864
No 124
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=5.8e-25 Score=167.84 Aligned_cols=198 Identities=16% Similarity=0.267 Sum_probs=177.3
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN 98 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 98 (228)
...+++++.++-|++.+.|...|.|-+|++++|-....+.....| .++|+.++...-++.+++++.+|.++.||..+..
T Consensus 448 ~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah-~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~ 526 (910)
T KOG1539|consen 448 DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH-KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV 526 (910)
T ss_pred CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccc-cCceeEEEecCCCceEEEccCcceEEEEecCCcc
Confidence 378999999999999999999999999999999877776433334 8999999999889999999999999999999888
Q ss_pred eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeE
Q 040370 99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEI 178 (228)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 178 (228)
.+..+.. ...+.++..+.....++.+..|-.|+++|..+.+.++.+.+ |...+..++|+|+|+++++++- |++|
T Consensus 527 l~~~l~l---~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g--h~nritd~~FS~DgrWlisasm-D~tI 600 (910)
T KOG1539|consen 527 LKKSLRL---GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG--HGNRITDMTFSPDGRWLISASM-DSTI 600 (910)
T ss_pred eeeeecc---CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc--cccceeeeEeCCCCcEEEEeec-CCcE
Confidence 7777766 56788888888888999999999999999999999999988 7888999999999999999766 8999
Q ss_pred EEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCC-CCEEEee
Q 040370 179 VIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTD-RSVRFWK 225 (228)
Q Consensus 179 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~i~vwd 225 (228)
++||+.++..+-.+ .-..+..++.|+|+|.+|||...| .-|.+|-
T Consensus 601 r~wDlpt~~lID~~--~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 601 RTWDLPTGTLIDGL--LVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred EEEeccCcceeeeE--ecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 99999999999887 456789999999999999999988 6699995
No 125
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=7.2e-25 Score=164.28 Aligned_cols=198 Identities=22% Similarity=0.382 Sum_probs=162.4
Q ss_pred ccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC
Q 040370 8 TAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG 87 (228)
Q Consensus 8 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 87 (228)
...+...+.+|...|.|++...++. +++|+.|.++++|...... .. ..+| ...|.+++.-|++ .++||+.|.
T Consensus 90 ~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~--~~---l~gH-~asVWAv~~l~e~-~~vTgsaDK 161 (745)
T KOG0301|consen 90 QAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV--YS---LQGH-TASVWAVASLPEN-TYVTGSADK 161 (745)
T ss_pred CCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhh--cc---cCCc-chheeeeeecCCC-cEEeccCcc
Confidence 3455667789999999999877776 9999999999999876533 22 2234 8999999999987 799999999
Q ss_pred eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370 88 AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF 167 (228)
Q Consensus 88 ~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (228)
+|++|.- ++.++++.+| ...|..+++-+++ .+++++.||.|++|++ +++.+..+.+ |...++++....++..
T Consensus 162 tIklWk~--~~~l~tf~gH--tD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~g--htn~vYsis~~~~~~~ 233 (745)
T KOG0301|consen 162 TIKLWKG--GTLLKTFSGH--TDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHG--HTNFVYSISMALSDGL 233 (745)
T ss_pred eeeeccC--Cchhhhhccc--hhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeec--cceEEEEEEecCCCCe
Confidence 9999974 7888999886 7899999998765 4889999999999999 7788888877 7788888887788888
Q ss_pred EEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 168 VLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 168 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
++++|. |+++++|+.. ++...+ ......++++.+-++|. +++|+.||.|+||-.
T Consensus 234 Ivs~gE-DrtlriW~~~--e~~q~I-~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 234 IVSTGE-DRTLRIWKKD--ECVQVI-TLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTV 287 (745)
T ss_pred EEEecC-CceEEEeecC--ceEEEE-ecCccceEEEEEeeCCC-EEEeccCceEEEEEe
Confidence 888776 8999999976 455444 23344899999888887 778889999999964
No 126
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.3e-23 Score=157.15 Aligned_cols=218 Identities=12% Similarity=0.193 Sum_probs=171.6
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
||++...-..+..-..+....|-+++|+ ++..|.+.+-+|.|.-||+.+++........ .+.|.+++.+|.+..+
T Consensus 51 iwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~----gg~IWsiai~p~~~~l 125 (691)
T KOG2048|consen 51 IWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSN----GGAIWSIAINPENTIL 125 (691)
T ss_pred EEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCC----CcceeEEEeCCccceE
Confidence 4665543222222222445789999999 5667788888999999999999987777654 7889999999999999
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe-----cce-eee
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL-----GAT-HTQ 154 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-----~~~-~~~ 154 (228)
+.|+.||.+..++...+............+.+.++.|+|++..+++|+.||.|++||...+..+.... ... ...
T Consensus 126 ~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~ 205 (691)
T KOG2048|consen 126 AIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPT 205 (691)
T ss_pred EeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCce
Confidence 99999998888888877766555444447899999999999999999999999999999988776221 111 344
Q ss_pred eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
.+.++.+-. ...++++.+ -|.|.+||...+.....+ ..|...|.+++..+++++++++|.|+.|..+..
T Consensus 206 iVWSv~~Lr-d~tI~sgDS-~G~V~FWd~~~gTLiqS~-~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~ 274 (691)
T KOG2048|consen 206 IVWSVLFLR-DSTIASGDS-AGTVTFWDSIFGTLIQSH-SCHDADVLALAVADNEDRVFSAGVDPKIIQYSL 274 (691)
T ss_pred EEEEEEEee-cCcEEEecC-CceEEEEcccCcchhhhh-hhhhcceeEEEEcCCCCeEEEccCCCceEEEEe
Confidence 556666653 344566555 599999999999998888 789999999999999999999999999887754
No 127
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.94 E-value=1.1e-24 Score=153.80 Aligned_cols=206 Identities=14% Similarity=0.257 Sum_probs=163.1
Q ss_pred eecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeec----cceeeeccceeeEEeCCC-CCeEEEEecCCeE
Q 040370 16 IQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSAN----VPEISVNGAINQVRYSST-GGMYVTASKDGAI 89 (228)
Q Consensus 16 ~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v 89 (228)
-+|+++|..++|+| +.+.||+|++|.+|.||++..+.....+. ...+| ...|--++|+|. .+.|++++.|..|
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH-~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGH-QRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeec-ceeEEEEeecccchhhHhhccCCceE
Confidence 48999999999999 67789999999999999997755433222 23344 889999999995 5689999999999
Q ss_pred EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEE
Q 040370 90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVL 169 (228)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (228)
.+||+.+++.+..+. | ...|.++.|+.+|.+|++.+.|+.|+|||.++++.+..-..| .......+.|-.++. ++
T Consensus 157 ~iWnv~tgeali~l~-h--pd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h-eG~k~~Raifl~~g~-i~ 231 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD-H--PDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH-EGAKPARAIFLASGK-IF 231 (472)
T ss_pred EEEeccCCceeeecC-C--CCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccc-cCCCcceeEEeccCc-ee
Confidence 999999999888876 3 889999999999999999999999999999999998877554 233445666777777 66
Q ss_pred EeeC---CCCeEEEEEcCCcceeEEee-cCCCCCcEEEEeCCCCcEEEEec-CCCCEEEeeec
Q 040370 170 SIDE---PSNEIVIWDALTAEKVAKWS-SNHIGAPRWIEHSPAEAAFITCG-TDRSVRFWKEI 227 (228)
Q Consensus 170 ~~~~---~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~ 227 (228)
++|. .+.++-+||..+.+....+. ....+.|.---+.|+...+..+| .|+.|+.|.+.
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence 6553 36889999987765543332 23445666666788888777665 69999998763
No 128
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.5e-24 Score=153.88 Aligned_cols=199 Identities=14% Similarity=0.229 Sum_probs=166.0
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceE--EeeeccceeeeccceeeEEeCCCCC-eEEEEecCCeEEEEeCC
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQC--YLSANVPEISVNGAINQVRYSSTGG-MYVTASKDGAIRLWDGV 95 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~ 95 (228)
.++|+++.|+|....+++++.|+.+++|.++.... ++.... . ..+|.+.+|.|+|. .+++++....++.||+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l---~-~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL---E-KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee---c-cCccceeeecCCCceEEEecccceEEEEeecc
Confidence 46899999999999999999999999999875432 222222 2 67899999999998 89999999999999998
Q ss_pred CCceeeE--EecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370 96 SANCVRS--IVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE 173 (228)
Q Consensus 96 ~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
+.+..+. ..+.. ...+.....++++++|+..+..|.|.+....+++.+..++ ....+..++|+.+++.++++++
T Consensus 289 ~ak~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K---ieG~v~~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK---IEGVVSDFTFSSDSKELLASGG 364 (514)
T ss_pred ccccccccCCCCcc-cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee---eccEEeeEEEecCCcEEEEEcC
Confidence 8764432 22322 4467788899999999999999999999999999998887 4667889999999999999888
Q ss_pred CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 174 PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 174 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
+|.|.+||++...++..+.....-.-++++.++++.+||+|+..|.|.|||.
T Consensus 365 -~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 365 -TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred -CceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEecc
Confidence 6999999999999988885443334566778899999999999999999984
No 129
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.7e-26 Score=179.43 Aligned_cols=210 Identities=13% Similarity=0.222 Sum_probs=165.0
Q ss_pred ecCcceEEEEEeCCCCE----EEEecCCCeEEEEEccc---ceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCe
Q 040370 17 QDTHNVRSVSFHPSGDF----LLAGTDHPIAHLYDVNT---FQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGA 88 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~----l~~~~~d~~i~vw~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~ 88 (228)
.-....+.++|.+.+.. ||.|.+||.|.+||... +.....+..... |.+.|..+.|++. ++.|++|+.||.
T Consensus 62 ~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~-h~G~V~gLDfN~~q~nlLASGa~~ge 140 (1049)
T KOG0307|consen 62 QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK-HTGPVLGLDFNPFQGNLLASGADDGE 140 (1049)
T ss_pred cccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc-cCCceeeeeccccCCceeeccCCCCc
Confidence 34567899999997665 88899999999999876 232222333333 4899999999995 559999999999
Q ss_pred EEEEeCCCCceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370 89 IRLWDGVSANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF 167 (228)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (228)
|.|||+.+.+.............|.+++|+. ....|++++.+|.+.|||++..+.+-.+..+.....+..+.|+|+...
T Consensus 141 I~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT 220 (1049)
T KOG0307|consen 141 ILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT 220 (1049)
T ss_pred EEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce
Confidence 9999999866555543333477899999998 456788999999999999999888777765544556788999999754
Q ss_pred EEEeeCC-C--CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCC-cEEEEecCCCCEEEeeec
Q 040370 168 VLSIDEP-S--NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAE-AAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 168 ~~~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~ 227 (228)
-+..+++ | -.|.+||+|..........+|...|.++.|++.+ .+|+|++.|+.|.+|+..
T Consensus 221 ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~ 284 (1049)
T KOG0307|consen 221 QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN 284 (1049)
T ss_pred eeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence 3333332 3 4799999998776666658999999999999955 899999999999999863
No 130
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.3e-25 Score=159.39 Aligned_cols=172 Identities=22% Similarity=0.312 Sum_probs=137.1
Q ss_pred cceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe
Q 040370 9 AKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA 88 (228)
Q Consensus 9 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 88 (228)
.+...++.+|..+|.-+.||||.++|++++.+..+.+||..+|+....+... +...+.+++|.|||..+++|+.|+.
T Consensus 259 ~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~---~~~S~~sc~W~pDg~~~V~Gs~dr~ 335 (519)
T KOG0293|consen 259 FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG---LGFSVSSCAWCPDGFRFVTGSPDRT 335 (519)
T ss_pred eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC---cCCCcceeEEccCCceeEecCCCCc
Confidence 3456677799999999999999999999999999999999999976655433 2578899999999999999999999
Q ss_pred EEEEeCCCCc-------e---eeEEe------------cc-----------------cccceeEEEEECCC---------
Q 040370 89 IRLWDGVSAN-------C---VRSIV------------GA-----------------HGTAEATSANFTKD--------- 120 (228)
Q Consensus 89 v~iwd~~~~~-------~---~~~~~------------~~-----------------~~~~~i~~~~~~~~--------- 120 (228)
+..||+.... . +..+. .+ ....+|++++.+.+
T Consensus 336 i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~ 415 (519)
T KOG0293|consen 336 IIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQ 415 (519)
T ss_pred EEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcc
Confidence 9999865321 0 00000 00 01223444444433
Q ss_pred ------------------------------------CCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCC
Q 040370 121 ------------------------------------QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT 164 (228)
Q Consensus 121 ------------------------------------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (228)
..++++|++|+.|++|+..+++++..+.+ |...+.+++|+|.
T Consensus 416 ~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG--Hs~~vNcVswNP~ 493 (519)
T KOG0293|consen 416 DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG--HSKTVNCVSWNPA 493 (519)
T ss_pred cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC--CcceeeEEecCCC
Confidence 46789999999999999999999999988 7788999999999
Q ss_pred CcEEEEeeCCCCeEEEEEcCC
Q 040370 165 EEFVLSIDEPSNEIVIWDALT 185 (228)
Q Consensus 165 ~~~~~~~~~~d~~i~i~d~~~ 185 (228)
...+++++++||+|+||-...
T Consensus 494 ~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 494 DPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CHHHhhccCCCCeEEEecCCc
Confidence 999999999999999998653
No 131
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=8.2e-24 Score=151.99 Aligned_cols=212 Identities=12% Similarity=0.219 Sum_probs=169.0
Q ss_pred ceeEEEeecCcceEEEEEeCCCC-EEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe
Q 040370 10 KRAFRVIQDTHNVRSVSFHPSGD-FLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA 88 (228)
Q Consensus 10 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 88 (228)
+.+..+.-...+|.+.+|.|+|. .+++++.....+.||+.+.+..+.... .+.....+.....+|++++|+..+..|.
T Consensus 248 ~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~-~g~e~~~~e~FeVShd~~fia~~G~~G~ 326 (514)
T KOG2055|consen 248 PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP-YGVEEKSMERFEVSHDSNFIAIAGNNGH 326 (514)
T ss_pred hhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCC-CCcccchhheeEecCCCCeEEEcccCce
Confidence 33444444577999999999998 889999999999999998775443333 2332557888899999999999999999
Q ss_pred EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEE
Q 040370 89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFV 168 (228)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (228)
|.+....+++.+..++. .+.+..++|+.+++.|++++.+|.|.+||++...+++++... .....+.++.++++.|+
T Consensus 327 I~lLhakT~eli~s~Ki---eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~yl 402 (514)
T KOG2055|consen 327 IHLLHAKTKELITSFKI---EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYL 402 (514)
T ss_pred EEeehhhhhhhhheeee---ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCceE
Confidence 99999999999999887 678999999999999999999999999999999888888643 33445677888899987
Q ss_pred EEeeCCCCeEEEEEcCCc------ceeEEe--------------------------------------------e--cCC
Q 040370 169 LSIDEPSNEIVIWDALTA------EKVAKW--------------------------------------------S--SNH 196 (228)
Q Consensus 169 ~~~~~~d~~i~i~d~~~~------~~~~~~--------------------------------------------~--~~~ 196 (228)
++ |++.|.|.|||..+. +++..+ + ...
T Consensus 403 A~-GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~ 481 (514)
T KOG2055|consen 403 AT-GSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTK 481 (514)
T ss_pred Ee-ccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCc
Confidence 77 455799999996431 111000 0 122
Q ss_pred CCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 197 IGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 197 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
-+.|+|++|+|.+.+||.|..+|++.+|.+-
T Consensus 482 vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 482 VGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 3468999999999999999999999999873
No 132
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=2e-22 Score=147.18 Aligned_cols=213 Identities=14% Similarity=0.146 Sum_probs=153.0
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEE-EEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFL-LAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM 79 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 79 (228)
+||....+ . .....+...+.+++|+|+++.+ ++++.++.|++||..+++....+.. ...+..++|+|+++.
T Consensus 15 ~~d~~t~~--~-~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~ 86 (300)
T TIGR03866 15 VIDTATLE--V-TRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS-----GPDPELFALHPNGKI 86 (300)
T ss_pred EEECCCCc--e-EEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-----CCCccEEEECCCCCE
Confidence 36665433 2 2223334457889999999876 5677889999999998876554432 223567899999987
Q ss_pred EEEE-ecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCC-eEEEEEccCCeeEEEEecceeeeeee
Q 040370 80 YVTA-SKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS-TVKLWEVSSGRLVKQYLGATHTQLRF 157 (228)
Q Consensus 80 l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~ 157 (228)
++++ +.++.+++||+++++.+..+.. ...+.+++|+|+++++++++.++ .+.+||.++++....... .....
T Consensus 87 l~~~~~~~~~l~~~d~~~~~~~~~~~~---~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~ 160 (300)
T TIGR03866 87 LYIANEDDNLVTVIDIETRKVLAEIPV---GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV---DQRPR 160 (300)
T ss_pred EEEEcCCCCeEEEEECCCCeEEeEeeC---CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc---CCCcc
Confidence 7654 5689999999998877766653 23467899999999999888765 567889988776654432 22345
Q ss_pred EEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecC----CCC--CcEEEEeCCCCcEEEE-ecCCCCEEEeeec
Q 040370 158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN----HIG--APRWIEHSPAEAAFIT-CGTDRSVRFWKEI 227 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----~~~--~v~~~~~~~~~~~l~s-~~~dg~i~vwd~~ 227 (228)
.+.|+|++..+++++..++.|++||+++++....+... +.. ....++|+|++++++. .+.++.+.+||+.
T Consensus 161 ~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 161 FAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 68899999998877766899999999998876655211 111 2356889999997544 4567789999863
No 133
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=2.1e-24 Score=160.55 Aligned_cols=225 Identities=14% Similarity=0.190 Sum_probs=164.8
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEE--------------e----------
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCY--------------L---------- 55 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~--------------~---------- 55 (228)
+||++..........++|...|.+++|.| +...|++|+.||.|.|||+.-...- .
T Consensus 126 ~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 126 PWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 48888666655556789999999999999 5677889999999999998642200 0
Q ss_pred eeccceeeeccceee---EEeCCCCCeEEEEec-CCeEEEEeCCCCceeeE------Eecccc---cceeEEEEECCCCC
Q 040370 56 SANVPEISVNGAINQ---VRYSSTGGMYVTASK-DGAIRLWDGVSANCVRS------IVGAHG---TAEATSANFTKDQR 122 (228)
Q Consensus 56 ~~~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~------~~~~~~---~~~i~~~~~~~~~~ 122 (228)
....... +...|.+ +.+..|...|++++. |+.|+|||++....... ...+.+ ...+.++.....|.
T Consensus 206 r~~k~kA-~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 206 RIRKWKA-ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT 284 (720)
T ss_pred ccccccc-ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence 0000001 1233333 445557888999887 99999999987543222 111111 34567888888889
Q ss_pred EEEEeeCCCeEEEEEccCCe--eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCc
Q 040370 123 FVLSCGKDSTVKLWEVSSGR--LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAP 200 (228)
Q Consensus 123 ~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v 200 (228)
+|++.+.|+.|++|++.... ++..+.++........-..+|++.+++++.. |...++|.+.+.+.......+|...|
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSs-d~~ayiw~vs~~e~~~~~l~Ght~eV 363 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSS-DEQAYIWVVSSPEAPPALLLGHTREV 363 (720)
T ss_pred eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCC-CcceeeeeecCccCChhhhhCcceEE
Confidence 99988899999999998643 3444444444445556678899999998766 89999999999888777778999999
Q ss_pred EEEEeCCC-CcEEEEecCCCCEEEeeec
Q 040370 201 RWIEHSPA-EAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 201 ~~~~~~~~-~~~l~s~~~dg~i~vwd~~ 227 (228)
++++|.|. -.-++|+++|.++++|++.
T Consensus 364 t~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 364 TTVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred EEEeeccccCCCceeeccCcceEEEecc
Confidence 99999983 3457888999999999973
No 134
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.9e-24 Score=146.72 Aligned_cols=221 Identities=14% Similarity=0.229 Sum_probs=168.3
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeecccee------e-----------
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEI------S----------- 63 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~------~----------- 63 (228)
|||+.+....+. +.+|..+|++++||++|+.|++++.|..|.+||+..|.+...+..... |
T Consensus 49 I~D~~T~~iar~--lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~ 126 (405)
T KOG1273|consen 49 IYDFDTFRIARM--LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATI 126 (405)
T ss_pred EEEccccchhhh--hhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEE
Confidence 578776554443 347999999999999999999999999999999998876554432110 0
Q ss_pred -------------------------eccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEEC
Q 040370 64 -------------------------VNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFT 118 (228)
Q Consensus 64 -------------------------~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (228)
.+....+..|.+.|+++++|...|.+.++|..+.+++..+.... ...|..+.++
T Consensus 127 ~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s 205 (405)
T KOG1273|consen 127 MEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-VQAIKQIIVS 205 (405)
T ss_pred ecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech-heeeeEEEEe
Confidence 01111223466778899999999999999999998888776642 4688999999
Q ss_pred CCCCEEEEeeCCCeEEEEEccCC-------e--eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCccee
Q 040370 119 KDQRFVLSCGKDSTVKLWEVSSG-------R--LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKV 189 (228)
Q Consensus 119 ~~~~~l~~~~~d~~i~~wd~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~ 189 (228)
..|+.|+.-+.|+.||.|+++.- + +.++++.--....-.+++|+.+|.|++++...-..++||.-..|..+
T Consensus 206 ~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLV 285 (405)
T KOG1273|consen 206 RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLV 285 (405)
T ss_pred ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCccee
Confidence 99999999999999999998631 1 11122111122334578899999999998877789999999999988
Q ss_pred EEeecCCC-CCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 190 AKWSSNHI-GAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 190 ~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
..+ .+.. .....+.|+|-...+++- ..|.|++|..
T Consensus 286 KIL-hG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 286 KIL-HGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred eee-cCCchhheeecccccceeeeeec-cCCceEEEEe
Confidence 887 4444 578889999988888887 7889999975
No 135
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=5.1e-24 Score=159.79 Aligned_cols=195 Identities=18% Similarity=0.324 Sum_probs=163.1
Q ss_pred EEeecCcceEE-EEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370 14 RVIQDTHNVRS-VSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL 91 (228)
Q Consensus 14 ~~~~~~~~v~~-~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 91 (228)
.+.+|.+-|.. ++|-+ ++-.+++|+.|.+|.+|......+...+. +| ++.|.++....++. +++||.|.++++
T Consensus 52 ~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lk---gH-~snVC~ls~~~~~~-~iSgSWD~Takv 126 (745)
T KOG0301|consen 52 AFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLK---GH-KSNVCSLSIGEDGT-LISGSWDSTAKV 126 (745)
T ss_pred ecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhh---cc-ccceeeeecCCcCc-eEecccccceEE
Confidence 34456676766 88875 55679999999999999999888766655 34 88899999877776 999999999999
Q ss_pred EeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370 92 WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI 171 (228)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
|.. +++...+.+| ...|.++..-|++ .++||+.|++|++|.- ++.++++.+ |...+..+++-+++.++-+
T Consensus 127 W~~--~~l~~~l~gH--~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~g--HtD~VRgL~vl~~~~flSc- 196 (745)
T KOG0301|consen 127 WRI--GELVYSLQGH--TASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSG--HTDCVRGLAVLDDSHFLSC- 196 (745)
T ss_pred ecc--hhhhcccCCc--chheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhcc--chhheeeeEEecCCCeEee-
Confidence 975 4555556666 8899999999887 7899999999999975 788899988 7888888888887765543
Q ss_pred eCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 172 DEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 172 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
++||.|++|++ +++.+.+. .+|..-+.++...+++..++++|+|++++||+.
T Consensus 197 -sNDg~Ir~w~~-~ge~l~~~-~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 197 -SNDGSIRLWDL-DGEVLLEM-HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKK 248 (745)
T ss_pred -cCCceEEEEec-cCceeeee-eccceEEEEEEecCCCCeEEEecCCceEEEeec
Confidence 45899999998 78888887 799999999998888899999999999999984
No 136
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.2e-23 Score=145.09 Aligned_cols=198 Identities=14% Similarity=0.240 Sum_probs=156.4
Q ss_pred cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC-
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS- 96 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~- 96 (228)
|.-.+..+-...++.+|++++.|..|.+|+++ |+.+...... ...-+..+.+|+|+++++++-.-.|++|.+--
T Consensus 186 h~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn----q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~ 260 (420)
T KOG2096|consen 186 HQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN----QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFT 260 (420)
T ss_pred cccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc----cccccceeeCCCCcEEEEecCCCCceEEEEEec
Confidence 55666777777788999999999999999998 7777666554 34456788999999999999999999998632
Q ss_pred --C-----ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC----C---eeEEEE--ecceeeeeeeEEE
Q 040370 97 --A-----NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS----G---RLVKQY--LGATHTQLRFQAV 160 (228)
Q Consensus 97 --~-----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~----~---~~~~~~--~~~~~~~~~~~~~ 160 (228)
| .....+++| ...|..++|+++...+++.+.||++++||+.- + +.+... ..+........+.
T Consensus 261 kdG~fqev~rvf~LkGH--~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~ 338 (420)
T KOG2096|consen 261 KDGTFQEVKRVFSLKGH--QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLE 338 (420)
T ss_pred cCcchhhhhhhheeccc--hhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEE
Confidence 2 223444554 88999999999999999999999999999852 1 122222 1122334445888
Q ss_pred ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
.+|++..++++.+ ..+++|..++++....+...|...|.+++|+++|++++|+| |..+++..
T Consensus 339 lsP~g~~lA~s~g--s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 339 LSPSGDSLAVSFG--SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred eCCCCcEEEeecC--CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 9999999988765 78999999999999888889999999999999999999987 56677653
No 137
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.3e-22 Score=150.59 Aligned_cols=203 Identities=11% Similarity=0.154 Sum_probs=165.5
Q ss_pred cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA 97 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 97 (228)
-+.+|.++||+.+.+.||.+-.+|.|.+|++..+-.....- .++....|.+++|++ +..|++.+.+|.|.-||+.++
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi--~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVI--HGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEE--ecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccC
Confidence 46899999999999999999999999999999865433221 223378899999995 456888999999999999999
Q ss_pred ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCe
Q 040370 98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNE 177 (228)
Q Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 177 (228)
+....+... .+.|++++.+|.+..++.|++||.++.++...++.............+.++.|+|++..++.++. ||.
T Consensus 101 k~~~~~d~~--gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-Dg~ 177 (691)
T KOG2048|consen 101 KQKYNIDSN--GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-DGV 177 (691)
T ss_pred ceeEEecCC--CcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc-Cce
Confidence 988888765 78999999999999999999999888888887777665555556788999999999998888655 899
Q ss_pred EEEEEcCCcceeEEee-------cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 178 IVIWDALTAEKVAKWS-------SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 178 i~i~d~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
|++||..++..+.... .....-|.++.|-.+ ..|++|..-|.|++||..
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~ 233 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSI 233 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEccc
Confidence 9999999998877221 112334677777654 469999999999999953
No 138
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=2.8e-22 Score=153.42 Aligned_cols=220 Identities=15% Similarity=0.241 Sum_probs=174.8
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC-e
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG-M 79 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 79 (228)
||++. +.+.++++.++...|+++.=+|--+.+|.|..+|+|.+++++.++.+..++.. .++|+.+.|..||+ .
T Consensus 186 l~Nvr--t~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d----~g~VtslSFrtDG~p~ 259 (910)
T KOG1539|consen 186 LWNVR--TGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD----WGRVTSLSFRTDGNPL 259 (910)
T ss_pred EEEec--cCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcc----ccceeEEEeccCCCee
Confidence 45555 44667777788899999999999999999999999999999999988877653 48899999999887 5
Q ss_pred EEEEecCCeEEEEeCCCCceeeEEeccc----------------------------------------------------
Q 040370 80 YVTASKDGAIRLWDGVSANCVRSIVGAH---------------------------------------------------- 107 (228)
Q Consensus 80 l~~~~~dg~v~iwd~~~~~~~~~~~~~~---------------------------------------------------- 107 (228)
+++|+..|.+.+||++..+....+...|
T Consensus 260 las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~ 339 (910)
T KOG1539|consen 260 LASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSC 339 (910)
T ss_pred EEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchh
Confidence 6677777999999976543322221000
Q ss_pred --------------------------------------------------------------------------------
Q 040370 108 -------------------------------------------------------------------------------- 107 (228)
Q Consensus 108 -------------------------------------------------------------------------------- 107 (228)
T Consensus 340 irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~ 419 (910)
T KOG1539|consen 340 IRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHK 419 (910)
T ss_pred eeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEec
Confidence
Q ss_pred ---------------------------ccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe-cceeeeeeeEE
Q 040370 108 ---------------------------GTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL-GATHTQLRFQA 159 (228)
Q Consensus 108 ---------------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~ 159 (228)
....+++++.++.|++.+.|...|.|-+|++.+|-....+. ...|...+..+
T Consensus 420 ~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gl 499 (910)
T KOG1539|consen 420 GKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGL 499 (910)
T ss_pred CcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEE
Confidence 01456777888888888899999999999999887777762 33478888899
Q ss_pred EECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe----------------------------------------ecCCCCC
Q 040370 160 VFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW----------------------------------------SSNHIGA 199 (228)
Q Consensus 160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~----------------------------------------~~~~~~~ 199 (228)
+...-++.+++++. +|.+.+||.++......+ ..+|.+.
T Consensus 500 a~D~~n~~~vsa~~-~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nr 578 (910)
T KOG1539|consen 500 AVDGTNRLLVSAGA-DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNR 578 (910)
T ss_pred EecCCCceEEEccC-cceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccc
Confidence 98888888888777 699999998765422221 1479999
Q ss_pred cEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 200 PRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 200 v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
|++++|||||++|++++.|++|++||+.
T Consensus 579 itd~~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 579 ITDMTFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred eeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence 9999999999999999999999999985
No 139
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=6.6e-25 Score=172.49 Aligned_cols=211 Identities=15% Similarity=0.265 Sum_probs=168.3
Q ss_pred eEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeE
Q 040370 12 AFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAI 89 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v 89 (228)
+.+...|++.|..+.|++ .++.||+|+.||.|.|||+.+.+.-.... .....+.|.+++|+.. ...|++++.+|.+
T Consensus 109 la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~--~~~~~~eI~~lsWNrkvqhILAS~s~sg~~ 186 (1049)
T KOG0307|consen 109 LATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG--SQAPPSEIKCLSWNRKVSHILASGSPSGRA 186 (1049)
T ss_pred HhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC--CCCCcccceEeccchhhhHHhhccCCCCCc
Confidence 344557999999999999 55699999999999999998854322221 2212678999999974 5578899999999
Q ss_pred EEEeCCCCceeeEEecccccceeEEEEECCCC-CEEEEeeCCC---eEEEEEccCCe-eEEEEecceeeeeeeEEEECCC
Q 040370 90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQ-RFVLSCGKDS---TVKLWEVSSGR-LVKQYLGATHTQLRFQAVFNDT 164 (228)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~---~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 164 (228)
.|||++..+.+..+..+.....+..++|+|+. ..+++++.|. .|.+||+|... .++.+++ |...+.++.|++.
T Consensus 187 ~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~--H~~GilslsWc~~ 264 (1049)
T KOG0307|consen 187 VIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG--HQRGILSLSWCPQ 264 (1049)
T ss_pred eeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc--cccceeeeccCCC
Confidence 99999999888888776555668899999965 4566666553 59999998644 4555555 7888999999999
Q ss_pred CcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc-EEEEecCCCCEEEeeec
Q 040370 165 EEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA-AFITCGTDRSVRFWKEI 227 (228)
Q Consensus 165 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~ 227 (228)
+..++.+++.|+.|.+|+.++++.+..+ ......+..+.|+|... .++.++-||.|.|+.+.
T Consensus 265 D~~lllSsgkD~~ii~wN~~tgEvl~~~-p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 265 DPRLLLSSGKDNRIICWNPNTGEVLGEL-PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred CchhhhcccCCCCeeEecCCCceEeeec-CCCCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 8655555666999999999999999999 45678899999999554 88888999999999864
No 140
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.3e-22 Score=139.62 Aligned_cols=192 Identities=17% Similarity=0.279 Sum_probs=140.5
Q ss_pred CcCCccccceeEEEeecCcceEEEEEeCCCC--EEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370 2 FDFSKATAKRAFRVIQDTHNVRSVSFHPSGD--FLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM 79 (228)
Q Consensus 2 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 79 (228)
||.. ..++.-.+..|.+.|+++.|.+... .|++|+.||.|.+|+....+++..++.+ .+.|+.++.+|.+++
T Consensus 68 YDm~--k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H----~~~Vt~lsiHPS~KL 141 (362)
T KOG0294|consen 68 YDMR--KRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAH----KGQVTDLSIHPSGKL 141 (362)
T ss_pred Eecc--chhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccc----ccccceeEecCCCce
Confidence 4444 3345556678999999999998654 8999999999999999998877776643 677999999999999
Q ss_pred EEEEecCCeEEEEeCCCCceeeEEeccc-------------------------------------ccceeEEEEECCCCC
Q 040370 80 YVTASKDGAIRLWDGVSANCVRSIVGAH-------------------------------------GTAEATSANFTKDQR 122 (228)
Q Consensus 80 l~~~~~dg~v~iwd~~~~~~~~~~~~~~-------------------------------------~~~~i~~~~~~~~~~ 122 (228)
.++.+.|+.+++||+-+|+.-......+ .+..+.++.|. ++.
T Consensus 142 ALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~ 220 (362)
T KOG0294|consen 142 ALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGS 220 (362)
T ss_pred EEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCc
Confidence 9999999999999988776443332211 01223444443 456
Q ss_pred EEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEE--EECCCCcEEEEeeCCCCeEEEEEcCCc-----ceeEEeecC
Q 040370 123 FVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQA--VFNDTEEFVLSIDEPSNEIVIWDALTA-----EKVAKWSSN 195 (228)
Q Consensus 123 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~i~i~d~~~~-----~~~~~~~~~ 195 (228)
+|++|+.|+.|++||..+..+...+.. |...+-.+ .-+|.+.++++.++ ||.|++||++.. +.+... .
T Consensus 221 ~L~vG~d~~~i~~~D~ds~~~~~~~~A--H~~RVK~i~~~~~~~~~~lvTaSS-DG~I~vWd~~~~~k~~~~~l~e~--n 295 (362)
T KOG0294|consen 221 ELLVGGDNEWISLKDTDSDTPLTEFLA--HENRVKDIASYTNPEHEYLVTASS-DGFIKVWDIDMETKKRPTLLAEL--N 295 (362)
T ss_pred eEEEecCCceEEEeccCCCccceeeec--chhheeeeEEEecCCceEEEEecc-CceEEEEEccccccCCcceeEEe--e
Confidence 788899999999999988888888877 44444444 45677777777666 899999999866 333333 2
Q ss_pred CCCCcEEEEe
Q 040370 196 HIGAPRWIEH 205 (228)
Q Consensus 196 ~~~~v~~~~~ 205 (228)
-...++|+..
T Consensus 296 ~~~RltCl~~ 305 (362)
T KOG0294|consen 296 TNVRLTCLRV 305 (362)
T ss_pred cCCccceeee
Confidence 2455666544
No 141
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=8.4e-24 Score=153.61 Aligned_cols=200 Identities=12% Similarity=0.127 Sum_probs=165.7
Q ss_pred ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCcee
Q 040370 21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCV 100 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 100 (228)
.-.|++......++++|+..+.|+|||++...+...+ ..| ...|+++.++-...+||+++..|.|.|..+.++...
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~l---kdh-~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t 156 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFL---KDH-QSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT 156 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhc---cCC-cceeEEEEecCCcceeEEeccCCcEEEEecccCccc
Confidence 4455555556689999999999999999964443333 334 789999999999999999999999999999998887
Q ss_pred eEEecccccceeEEEEECCCCC-EEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEE
Q 040370 101 RSIVGAHGTAEATSANFTKDQR-FVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIV 179 (228)
Q Consensus 101 ~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 179 (228)
..+.... ...+.-+.|+|..+ +|.+++.+|.|.+||+....+...+. ..|..+...++|+|..+.++++-+.|..|.
T Consensus 157 t~f~~~s-gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~-~~HsAP~~gicfspsne~l~vsVG~Dkki~ 234 (673)
T KOG4378|consen 157 TTFTIDS-GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS-EAHSAPCRGICFSPSNEALLVSVGYDKKIN 234 (673)
T ss_pred cceecCC-CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh-hhccCCcCcceecCCccceEEEecccceEE
Confidence 7776543 55677899999665 56788999999999998776666554 347888899999999998888888899999
Q ss_pred EEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeecC
Q 040370 180 IWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL 228 (228)
Q Consensus 180 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~l 228 (228)
+||.+.......+ ....+...++|.++|.+|+.|...|.|..||+++
T Consensus 235 ~yD~~s~~s~~~l--~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 235 IYDIRSQASTDRL--TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred Eeeccccccccee--eecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 9999987777776 4556899999999999999999999999999875
No 142
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=2.6e-23 Score=151.11 Aligned_cols=198 Identities=16% Similarity=0.279 Sum_probs=162.7
Q ss_pred CCcCCccccceeE-EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC-
Q 040370 1 FFDFSKATAKRAF-RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG- 78 (228)
Q Consensus 1 iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 78 (228)
|||+. .+.+. .+.+|...|+++.++-...+||+++..|.|.|..+.++.....+.... ...|.-+.|+|..+
T Consensus 105 iwdl~---~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s---gqsvRll~ys~skr~ 178 (673)
T KOG4378|consen 105 IWDLR---AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS---GQSVRLLRYSPSKRF 178 (673)
T ss_pred ehhhH---HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC---CCeEEEeecccccce
Confidence 68887 23333 344799999999999999999999999999999999887655554432 45677899999766
Q ss_pred eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeee
Q 040370 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRF 157 (228)
Q Consensus 79 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 157 (228)
+|.+++.+|.|.+||+....++..+...| ..+...++|+| +..+|++.+.|..|.+||.+..+....+. ...+..
T Consensus 179 lL~~asd~G~VtlwDv~g~sp~~~~~~~H-sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~---y~~Pls 254 (673)
T KOG4378|consen 179 LLSIASDKGAVTLWDVQGMSPIFHASEAH-SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT---YSHPLS 254 (673)
T ss_pred eeEeeccCCeEEEEeccCCCcccchhhhc-cCCcCcceecCCccceEEEecccceEEEeecccccccceee---ecCCcc
Confidence 56688999999999998888877776654 88999999999 55678899999999999999777666664 345678
Q ss_pred EEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCC
Q 040370 158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAE 209 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (228)
.++|.++|.+++++.+ .|.|..||+|..+.+......|...|++++|-|..
T Consensus 255 tvaf~~~G~~L~aG~s-~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 255 TVAFSECGTYLCAGNS-KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eeeecCCceEEEeecC-CceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 8999999999998777 59999999998877777668999999999998765
No 143
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=4.5e-23 Score=140.90 Aligned_cols=163 Identities=13% Similarity=0.273 Sum_probs=136.5
Q ss_pred ecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC---CCeEEEEecCCeEEEE
Q 040370 17 QDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST---GGMYVTASKDGAIRLW 92 (228)
Q Consensus 17 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~v~iw 92 (228)
+|...|.++.|-| |...+.+++-|.+++|||..+.+....+.. .+.|.+-+++|- ..++|+|..|-.|++-
T Consensus 99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-----e~~VYshamSp~a~sHcLiA~gtr~~~VrLC 173 (397)
T KOG4283|consen 99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-----EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLC 173 (397)
T ss_pred cceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeec-----CceeehhhcChhhhcceEEEEecCCCcEEEE
Confidence 6788999999999 778899999999999999999887777665 567888889883 4478888899999999
Q ss_pred eCCCCceeeEEecccccceeEEEEECCCCCE-EEEeeCCCeEEEEEccCC-eeEEEEe------------cceeeeeeeE
Q 040370 93 DGVSANCVRSIVGAHGTAEATSANFTKDQRF-VLSCGKDSTVKLWEVSSG-RLVKQYL------------GATHTQLRFQ 158 (228)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~~wd~~~~-~~~~~~~------------~~~~~~~~~~ 158 (228)
|+.+|.....+.+| ...|.++.|+|...+ |++|+.||.|++||++.. .+...+. ...|...+..
T Consensus 174 Di~SGs~sH~LsGH--r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvng 251 (397)
T KOG4283|consen 174 DIASGSFSHTLSGH--RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNG 251 (397)
T ss_pred eccCCcceeeeccc--cCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeee
Confidence 99999999999987 789999999997765 789999999999999854 2222221 2346677889
Q ss_pred EEECCCCcEEEEeeCCCCeEEEEEcCCcc
Q 040370 159 AVFNDTEEFVLSIDEPSNEIVIWDALTAE 187 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 187 (228)
++|..++.++++.+. |..+++|+..+|+
T Consensus 252 la~tSd~~~l~~~gt-d~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 252 LAWTSDARYLASCGT-DDRIRVWNMESGR 279 (397)
T ss_pred eeecccchhhhhccC-ccceEEeecccCc
Confidence 999999999999877 7899999987764
No 144
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=1.9e-23 Score=149.94 Aligned_cols=221 Identities=14% Similarity=0.179 Sum_probs=166.7
Q ss_pred CCcCC--ccccceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCC
Q 040370 1 FFDFS--KATAKRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG 77 (228)
Q Consensus 1 iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 77 (228)
+||+. .+.....+.+..|..+|.++.|+| +...+++.+.||+|++-|++.+.....+.... . ...+..+.|+.+.
T Consensus 214 ~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~-d-~~~fs~~d~~~e~ 291 (498)
T KOG4328|consen 214 LWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDT-D-NIWFSSLDFSAES 291 (498)
T ss_pred EEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCc-c-ceeeeeccccCCC
Confidence 58885 344556777778999999999999 66789999999999999999865433332211 1 4567888898887
Q ss_pred CeEEEEecCCeEEEEeCCCCce-eeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEE--EEecceee
Q 040370 78 GMYVTASKDGAIRLWDGVSANC-VRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVK--QYLGATHT 153 (228)
Q Consensus 78 ~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~--~~~~~~~~ 153 (228)
..++.+..=|.+.+||.+++.. ...+..| ...|.+++++| ...+|+|++.|++.+|||+|...... .+..-.|.
T Consensus 292 ~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh--~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hr 369 (498)
T KOG4328|consen 292 RSVLFGDNVGNFNVIDLRTDGSEYENLRLH--KKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHR 369 (498)
T ss_pred ccEEEeecccceEEEEeecCCccchhhhhh--hcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccccc
Confidence 7788888778999999998765 4444444 55999999999 55679999999999999999754333 24444478
Q ss_pred eeeeEEEECCCCcEEEEeeCCCCeEEEEEcC----CcceeEEeecCCCC----CcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 154 QLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL----TAEKVAKWSSNHIG----APRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~----~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
..+.++.|+|.+..+++++. |..|+|||.. ...+...+...+.. ......|.|+..+++.|-.-..|-|+|
T Consensus 370 rsV~sAyFSPs~gtl~TT~~-D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 370 RSVNSAYFSPSGGTLLTTCQ-DNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred ceeeeeEEcCCCCceEeecc-CCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 88999999999999887766 8999999983 33444444211111 244568999999999998888888887
Q ss_pred e
Q 040370 226 E 226 (228)
Q Consensus 226 ~ 226 (228)
-
T Consensus 449 ~ 449 (498)
T KOG4328|consen 449 G 449 (498)
T ss_pred C
Confidence 4
No 145
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.7e-23 Score=149.39 Aligned_cols=200 Identities=13% Similarity=0.210 Sum_probs=158.1
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce------EEeeeccceeeeccceeeEEeC
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ------CYLSANVPEISVNGAINQVRYS 74 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~------~~~~~~~~~~~~~~~i~~~~~~ 74 (228)
+|.++++.....+ ..|-..|+|+.|+-|+.+|++|+.||.|.+|.+.+-- ....+... .+|.-+|+++...
T Consensus 107 lWelssG~LL~v~--~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f-~~HtlsITDl~ig 183 (476)
T KOG0646|consen 107 LWELSSGILLNVL--SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF-SDHTLSITDLQIG 183 (476)
T ss_pred EEEeccccHHHHH--HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee-ccCcceeEEEEec
Confidence 3556654443333 5799999999999999999999999999999875421 11112222 2347889999887
Q ss_pred CC--CCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC-----------
Q 040370 75 ST--GGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG----------- 141 (228)
Q Consensus 75 ~~--~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~----------- 141 (228)
+. ..+++|+|.|.++++||+..+..+..+.. +..+.+++.+|.+..++.|+.+|.|.+.++.+.
T Consensus 184 ~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f---p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~ 260 (476)
T KOG0646|consen 184 SGGTNARLYTASEDRTIKLWDLSLGVLLLTITF---PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKG 260 (476)
T ss_pred CCCccceEEEecCCceEEEEEeccceeeEEEec---CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccc
Confidence 64 45899999999999999999999988877 678999999999999999999999999887542
Q ss_pred -----eeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCC
Q 040370 142 -----RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPA 208 (228)
Q Consensus 142 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 208 (228)
..+..+.++.....+++++.+-++..+++++. ||.++|||+.+.+.+.++ ....++|+.+.+.|-
T Consensus 261 ~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~-dg~VcvWdi~S~Q~iRtl-~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 261 RHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE-DGKVCVWDIYSKQCIRTL-QTSKGPVTNLQINPL 330 (476)
T ss_pred cccccceeeeeccccCCcceeEEEEecCccEEEeeCC-CCCEEEEecchHHHHHHH-hhhccccceeEeecc
Confidence 23445556555568999999999999888555 899999999999988887 346789999998663
No 146
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3.6e-22 Score=136.89 Aligned_cols=198 Identities=7% Similarity=0.041 Sum_probs=155.8
Q ss_pred eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEE
Q 040370 11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIR 90 (228)
Q Consensus 11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 90 (228)
....+-.|..+|+|+.+++....+++|+.|++|++||............ .+.|.++..+ ++.|+.|+.|..+.
T Consensus 86 ~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-----~kkVy~~~v~--g~~LvVg~~~r~v~ 158 (323)
T KOG1036|consen 86 NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-----GKKVYCMDVS--GNRLVVGTSDRKVL 158 (323)
T ss_pred cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-----CceEEEEecc--CCEEEEeecCceEE
Confidence 3445557999999999999888999999999999999987443333322 4578888775 77899999999999
Q ss_pred EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC----eeEEEEecce-------eeeeeeEE
Q 040370 91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG----RLVKQYLGAT-------HTQLRFQA 159 (228)
Q Consensus 91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~----~~~~~~~~~~-------~~~~~~~~ 159 (228)
+||+++...........-+..+.++++.|++.-+++++-||.|.+=.++.. +....++.|. ...++.++
T Consensus 159 iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai 238 (323)
T KOG1036|consen 159 IYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAI 238 (323)
T ss_pred EEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEecee
Confidence 999998776554433333668899999998888999999999988766654 2333343322 23467889
Q ss_pred EECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecC
Q 040370 160 VFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGT 217 (228)
Q Consensus 160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 217 (228)
.|+|-...++++|+ ||.|.+||+.+.+.+..+ ......|.+++|+.+|..||.++.
T Consensus 239 ~Fhp~~~tfaTgGs-DG~V~~Wd~~~rKrl~q~-~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 239 AFHPIHGTFATGGS-DGIVNIWDLFNRKRLKQL-AKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EeccccceEEecCC-CceEEEccCcchhhhhhc-cCCCCceEEEEeccCCCeEEEEec
Confidence 99999888887766 899999999999988888 455778999999999999999874
No 147
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.2e-22 Score=155.28 Aligned_cols=189 Identities=16% Similarity=0.225 Sum_probs=158.0
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS 96 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 96 (228)
..+-++++++|+.+|+++|.|+.|-.|++-++.+......++. | .++|.++.|+|.+++||+.+.||.|++||+++
T Consensus 94 Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg---h-~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 94 RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG---H-DAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD 169 (933)
T ss_pred eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc---c-CCceeeeeEcCCCCEEEEEecCceEEEEEccc
Confidence 3467899999999999999999999999999998776655543 3 89999999999999999999999999999999
Q ss_pred CceeeEEeccc------ccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370 97 ANCVRSIVGAH------GTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS 170 (228)
Q Consensus 97 ~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
+.....+..-. ....+..++|+|++..++..+.|+.|++|+.........+....+......+.|+|+|.|+++
T Consensus 170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAA 249 (933)
T KOG1274|consen 170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAA 249 (933)
T ss_pred chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEee
Confidence 87766654321 134567799999988899999999999999999999888887766667899999999999999
Q ss_pred eeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEe
Q 040370 171 IDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITC 215 (228)
Q Consensus 171 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 215 (228)
++- ||.|.|||..+.+. ......|.+++|.|+.+.+-.-
T Consensus 250 s~~-~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p~~n~it~~ 288 (933)
T KOG1274|consen 250 STL-DGQILVWNVDTHER-----HEFKRAVCCEAWKPNANAITLI 288 (933)
T ss_pred ecc-CCcEEEEecccchh-----ccccceeEEEecCCCCCeeEEE
Confidence 776 79999999988322 2345689999999987754433
No 148
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.91 E-value=6.9e-23 Score=139.61 Aligned_cols=208 Identities=15% Similarity=0.249 Sum_probs=156.5
Q ss_pred eecCcceEEEEEeCCC-----CEEEEecCCCeEEEEEcccceEEeeec-----cceeeeccceeeEEeCC-CCCeEEEEe
Q 040370 16 IQDTHNVRSVSFHPSG-----DFLLAGTDHPIAHLYDVNTFQCYLSAN-----VPEISVNGAINQVRYSS-TGGMYVTAS 84 (228)
Q Consensus 16 ~~~~~~v~~~~~~~~~-----~~l~~~~~d~~i~vw~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~-~~~~l~~~~ 84 (228)
+.|..+++.+.|.|+. ++||+.+ ..+++|.+...+...... ....++..++++..|+. +-+++.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 4788999999999976 3555554 379999987422111110 11223377899999997 677999999
Q ss_pred cCCeEEEEeCCCCce---eeEEecccccceeEEEEECCCC-CEEEEeeCCCeEEEEEccCCeeEEEE-ecceeeeeeeEE
Q 040370 85 KDGAIRLWDGVSANC---VRSIVGAHGTAEATSANFTKDQ-RFVLSCGKDSTVKLWEVSSGRLVKQY-LGATHTQLRFQA 159 (228)
Q Consensus 85 ~dg~v~iwd~~~~~~---~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~ 159 (228)
-|-+..|||++++.. ...+-.| ..+|..++|...+ +.+++.+.||.+|+||+|..+-...+ +......+...+
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAH--DKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRL 248 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAH--DKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRL 248 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEec--CcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceee
Confidence 999999999998743 3334444 7899999999844 57899999999999999986654433 333335667788
Q ss_pred EECCCCc-EEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeeec
Q 040370 160 VFNDTEE-FVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 160 ~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~ 227 (228)
.|++... ++++...+...|.+.|+|..........+|.+.|+.++|.| ....|+|+|.|..+.+||+.
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence 8888765 45555555578999999987665555589999999999999 56789999999999999974
No 149
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.91 E-value=2.3e-22 Score=136.97 Aligned_cols=202 Identities=16% Similarity=0.292 Sum_probs=156.0
Q ss_pred cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceE-Eeeeccce-eeeccceeeEEeCC--CCCeEEEEecCCeEEEEe
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQC-YLSANVPE-ISVNGAINQVRYSS--TGGMYVTASKDGAIRLWD 93 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~-~~~~~~~~-~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~iwd 93 (228)
+-+.|.|+.|.|++..+++-. |..|.+|+++.+.. ........ ..+....++-+|+| +++.+++. .|+++..||
T Consensus 122 avg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D 199 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWD 199 (370)
T ss_pred HhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEE
Confidence 446899999999999998776 77899999998765 22222211 11255678889999 67777766 479999999
Q ss_pred CCCCceeeEEecccccceeEEEEECCCCC-EEEEeeCCCeEEEEEccCCe-eEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370 94 GVSANCVRSIVGAHGTAEATSANFTKDQR-FVLSCGKDSTVKLWEVSSGR-LVKQYLGATHTQLRFQAVFNDTEEFVLSI 171 (228)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
+++.+....+...| ...+..+.|+|+.+ +|++|+.||.|++||.|..+ ++..+.+ |...+.++.|+|....++.+
T Consensus 200 ~RT~~~~~sI~dAH-gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~--HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 200 LRTMKKNNSIEDAH-GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG--HSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred ccchhhhcchhhhh-cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC--CceEEEEEEecCccceEEEe
Confidence 99998888887766 67899999999765 68899999999999998754 4555544 78889999999998887777
Q ss_pred eCCCCeEEEEEcCCcc-----------------------------eeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCE
Q 040370 172 DEPSNEIVIWDALTAE-----------------------------KVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSV 221 (228)
Q Consensus 172 ~~~d~~i~i~d~~~~~-----------------------------~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i 221 (228)
++.|..|.+|....-. .+.++ ..|...|.+++|+. +.-.+|+-+.||++
T Consensus 277 ~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty-dehEDSVY~~aWSsadPWiFASLSYDGRv 355 (370)
T KOG1007|consen 277 GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY-DEHEDSVYALAWSSADPWIFASLSYDGRV 355 (370)
T ss_pred cCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc-cccccceEEEeeccCCCeeEEEeccCceE
Confidence 7779999999653211 11122 57999999999988 55678888999998
Q ss_pred EEee
Q 040370 222 RFWK 225 (228)
Q Consensus 222 ~vwd 225 (228)
.|=+
T Consensus 356 iIs~ 359 (370)
T KOG1007|consen 356 IISS 359 (370)
T ss_pred Eeec
Confidence 7744
No 150
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.2e-21 Score=127.52 Aligned_cols=207 Identities=18% Similarity=0.317 Sum_probs=166.1
Q ss_pred eeEEEeecCcceEEEEEeC----CCCEEEEec-CCCeEEEEEcccceEEeeeccceeeeccceeeE-EeCCCCCeEEEEe
Q 040370 11 RAFRVIQDTHNVRSVSFHP----SGDFLLAGT-DHPIAHLYDVNTFQCYLSANVPEISVNGAINQV-RYSSTGGMYVTAS 84 (228)
Q Consensus 11 ~~~~~~~~~~~v~~~~~~~----~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~ 84 (228)
..+++.-|.+.|+.++|-. .+..|++++ .|-.|++-|...|+....+..+ .+.|.++ .| ++-.+++|+
T Consensus 128 ~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sgh----tghilalysw--n~~m~~sgs 201 (350)
T KOG0641|consen 128 HDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGH----TGHILALYSW--NGAMFASGS 201 (350)
T ss_pred cceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCC----cccEEEEEEe--cCcEEEccC
Confidence 4456677999999999964 345666654 4667777788888876665544 5556555 35 578999999
Q ss_pred cCCeEEEEeCCCCceeeEEecccc-----cceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEE
Q 040370 85 KDGAIRLWDGVSANCVRSIVGAHG-----TAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQA 159 (228)
Q Consensus 85 ~dg~v~iwd~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
.|.+|++||++-...+..+....+ ...|.+++..|.|++|++|-.|....+||++.++.++.+.. |...+.++
T Consensus 202 qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~p--hsadir~v 279 (350)
T KOG0641|consen 202 QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHP--HSADIRCV 279 (350)
T ss_pred CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCC--CccceeEE
Confidence 999999999998888777644221 36789999999999999999999999999999999999866 77889999
Q ss_pred EECCCCcEEEEeeCCCCeEEEEEcCCc---ceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 160 VFNDTEEFVLSIDEPSNEIVIWDALTA---EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
.|+|...|+++++. |..|++-|+... +........|...+..+.|+|..--+++.+.|.++.+|-+
T Consensus 280 rfsp~a~yllt~sy-d~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 280 RFSPGAHYLLTCSY-DMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred EeCCCceEEEEecc-cceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 99999999998665 899999998632 2233333679999999999999999999999999999975
No 151
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=1.4e-22 Score=153.35 Aligned_cols=223 Identities=14% Similarity=0.243 Sum_probs=169.2
Q ss_pred CCcCCccc-cceeEEEeecCcceEEEEEeCC-----------CCEEEEecCCCeEEEEEcccceEEeeec----------
Q 040370 1 FFDFSKAT-AKRAFRVIQDTHNVRSVSFHPS-----------GDFLLAGTDHPIAHLYDVNTFQCYLSAN---------- 58 (228)
Q Consensus 1 iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~d~~i~vw~~~~~~~~~~~~---------- 58 (228)
|||+.+.. ..+....+-|...|..+.--|- ...|.+++.|++|++|+++.+..-..+.
T Consensus 350 vWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~k 429 (1080)
T KOG1408|consen 350 VWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSK 429 (1080)
T ss_pred EEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhc
Confidence 58887654 3466777789999988877661 1358899999999999997632111100
Q ss_pred cc-----------------------eeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEE
Q 040370 59 VP-----------------------EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSA 115 (228)
Q Consensus 59 ~~-----------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~ 115 (228)
.+ .......+.+++.+|+|++|++|..-|+++||++.+-+....+..| ..+|.|+
T Consensus 430 i~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAH--esEilcL 507 (1080)
T KOG1408|consen 430 IPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAH--ESEILCL 507 (1080)
T ss_pred CccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecc--cceeEEE
Confidence 00 0001446899999999999999999999999999998888888776 8899999
Q ss_pred EECC---CCCEEEEeeCCCeEEEEEccCCe-eEEEEec------------------------------------------
Q 040370 116 NFTK---DQRFVLSCGKDSTVKLWEVSSGR-LVKQYLG------------------------------------------ 149 (228)
Q Consensus 116 ~~~~---~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~------------------------------------------ 149 (228)
.|+. ..++|++++.|+.|.+||+...- +++++.+
T Consensus 508 eyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f 587 (1080)
T KOG1408|consen 508 EYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLF 587 (1080)
T ss_pred eecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceec
Confidence 9986 45789999999999999985321 1111111
Q ss_pred --ce---eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec--CCCCCcEEEEeCCCCcEEEEecCCCCEE
Q 040370 150 --AT---HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS--NHIGAPRWIEHSPAEAAFITCGTDRSVR 222 (228)
Q Consensus 150 --~~---~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 222 (228)
+. .....+.+...|..+++++++. |..|+|||+.+++....+.. +|.+....+...|.|.||++.+.|.++.
T Consensus 588 ~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ-Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~ 666 (1080)
T KOG1408|consen 588 PRHTQTLSKTTLYDMAVDPTSKLVVTVCQ-DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLC 666 (1080)
T ss_pred cccccccccceEEEeeeCCCcceEEEEec-ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceE
Confidence 00 1223456677788888888666 89999999999999988853 5677889999999999999999999999
Q ss_pred Eeee
Q 040370 223 FWKE 226 (228)
Q Consensus 223 vwd~ 226 (228)
++|.
T Consensus 667 ~~Df 670 (1080)
T KOG1408|consen 667 FVDF 670 (1080)
T ss_pred EEEe
Confidence 9995
No 152
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=3.2e-21 Score=140.48 Aligned_cols=213 Identities=16% Similarity=0.208 Sum_probs=137.9
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
|||+.+....- .....++.|....|+|....++.....+.+..|+++.+...+.....+.+.+..|.|++|.++|. +
T Consensus 184 VWdWqk~~~~~--~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-v 260 (626)
T KOG2106|consen 184 VWDWQKKAKLG--PVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-V 260 (626)
T ss_pred hhhchhhhccC--cceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-E
Confidence 57777544332 23345778999999995555554445689999999998877666555555467899999999886 7
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEcc---------------------
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVS--------------------- 139 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~--------------------- 139 (228)
+||..+|.|.||+..+.+..+....| .+.|.+++.-.+|. |++|+.|+.|..||-.
T Consensus 261 iTgDS~G~i~Iw~~~~~~~~k~~~aH--~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e 337 (626)
T KOG2106|consen 261 ITGDSGGNILIWSKGTNRISKQVHAH--DGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAE 337 (626)
T ss_pred EeecCCceEEEEeCCCceEEeEeeec--CCceEEEEEecCcc-EeecCccceEEeccccccccccccCchhcCCeeEEec
Confidence 89999999999997766655555432 45555555555554 2335555555555411
Q ss_pred -----------------------------------------------------------CCeeEEEEecceeeeeeeEEE
Q 040370 140 -----------------------------------------------------------SGRLVKQYLGATHTQLRFQAV 160 (228)
Q Consensus 140 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 160 (228)
..++..... ...+..++.
T Consensus 338 ~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~---~~d~~~~~~ 414 (626)
T KOG2106|consen 338 GKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKI---IEDPAECAD 414 (626)
T ss_pred CCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEE---ecCceeEee
Confidence 111111111 123344555
Q ss_pred ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
|+|.+ .+++ |...|...+.|..+...+... .. ..+++.++|+|+|.+||.|+.|+.|.+|.+
T Consensus 415 fhpsg-~va~-Gt~~G~w~V~d~e~~~lv~~~-~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~V 476 (626)
T KOG2106|consen 415 FHPSG-VVAV-GTATGRWFVLDTETQDLVTIH-TD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRV 476 (626)
T ss_pred ccCcc-eEEE-eeccceEEEEecccceeEEEE-ec-CCceEEEEEcCCCCEEEEecCCCeEEEEEE
Confidence 55555 3332 233455556665553333332 33 789999999999999999999999999976
No 153
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=9.8e-23 Score=150.96 Aligned_cols=204 Identities=17% Similarity=0.239 Sum_probs=154.7
Q ss_pred eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC------------
Q 040370 11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG------------ 78 (228)
Q Consensus 11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------ 78 (228)
..+.+.+|++.|+++...|.|.+|++|+.||+|+||.+.++.++..... .+.|.|++|+|.+.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-----d~~I~~vaw~P~~~~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-----DSEIRSVAWNPLSDLCVLAVAVGECV 466 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-----cceeEEEEecCCCCceeEEEEecCce
Confidence 3445569999999999999999999999999999999999998876654 45566666666443
Q ss_pred --------------------------------------------------------------------eEEEEecC---C
Q 040370 79 --------------------------------------------------------------------MYVTASKD---G 87 (228)
Q Consensus 79 --------------------------------------------------------------------~l~~~~~d---g 87 (228)
+|++...+ .
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence 33222211 1
Q ss_pred eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370 88 AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF 167 (228)
Q Consensus 88 ~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (228)
.|.|.++........+.. ..+.+.++.|+|...+|+.++. ..|++||+..+..+..+.. ....+..++.+|.|..
T Consensus 547 ~VliHQLSK~~sQ~PF~k--skG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~t--g~kwiS~msihp~GDn 621 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQSPFRK--SKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLT--GSKWISSMSIHPNGDN 621 (733)
T ss_pred eEEEEecccccccCchhh--cCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhc--CCeeeeeeeecCCCCe
Confidence 222233222222211211 2567899999999999988875 5699999988777766654 5667889999999999
Q ss_pred EEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 168 VLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 168 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
+++++. |+.+..||+.-..........|...+++++|++.-.++++|+.||.+.|+-
T Consensus 622 li~gs~-d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 622 LILGSY-DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred EEEecC-CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 999666 899999999877665555578999999999999999999999999999874
No 154
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.91 E-value=1.1e-22 Score=138.63 Aligned_cols=207 Identities=16% Similarity=0.223 Sum_probs=158.0
Q ss_pred eecCcceEEEEEeC-CCCEEEEecCC-------CeEEEEEcccceEEe------ee-ccceeeeccceeeEEeCCCCCeE
Q 040370 16 IQDTHNVRSVSFHP-SGDFLLAGTDH-------PIAHLYDVNTFQCYL------SA-NVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 16 ~~~~~~v~~~~~~~-~~~~l~~~~~d-------~~i~vw~~~~~~~~~------~~-~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
..|.++|..++-+| +...|+++..+ ..+.||.+....... .. .....+ -+.|.|+.|.|++..+
T Consensus 60 ~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldtea-vg~i~cvew~Pns~kl 138 (370)
T KOG1007|consen 60 FHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEA-VGKINCVEWEPNSDKL 138 (370)
T ss_pred hcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHH-hCceeeEEEcCCCCee
Confidence 35778999999999 55666665432 247799886533211 01 111122 4589999999999988
Q ss_pred EEEecCCeEEEEeCCCCce-eeEEecc---cccceeEEEEECC--CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeee
Q 040370 81 VTASKDGAIRLWDGVSANC-VRSIVGA---HGTAEATSANFTK--DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQ 154 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~-~~~~~~~---~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 154 (228)
++-. |..|.+|++..+.. ...+... .+....++-+|+| +++.+++. .|+++..||+|+.+....+.. .|..
T Consensus 139 asm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~d-AHgq 215 (370)
T KOG1007|consen 139 ASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIED-AHGQ 215 (370)
T ss_pred EEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhh-hhcc
Confidence 8776 88999999988765 3333221 1244677888999 67777665 588999999999888777764 3788
Q ss_pred eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeee
Q 040370 155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~ 226 (228)
.+..+.|+|+.+++++++++||.|++||.|..+.......+|...|.++.|+| ..++++++|.|..|.+|-.
T Consensus 216 ~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 216 RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred eeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence 89999999999999999999999999999987766555589999999999999 5678899999999999853
No 155
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=7.5e-23 Score=153.63 Aligned_cols=212 Identities=13% Similarity=0.258 Sum_probs=161.2
Q ss_pred ceeEEEeecCcceEEEEEeCCCCEEEEecCC-----CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe
Q 040370 10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDH-----PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS 84 (228)
Q Consensus 10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 84 (228)
++..++.+|..+|.+++.+|+++++|+++.. ..|++|+..+-.....+. +| .-.|+.++|||++++|++.+
T Consensus 516 PEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~---~H-sLTVT~l~FSpdg~~LLsvs 591 (764)
T KOG1063|consen 516 PEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE---GH-SLTVTRLAFSPDGRYLLSVS 591 (764)
T ss_pred hhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec---cc-ceEEEEEEECCCCcEEEEee
Confidence 4556778999999999999999999998764 468999988766555333 33 77899999999999999999
Q ss_pred cCCeEEEEeCCCCce----eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC--eeEEEEecceeeeeeeE
Q 040370 85 KDGAIRLWDGVSANC----VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG--RLVKQYLGATHTQLRFQ 158 (228)
Q Consensus 85 ~dg~v~iwd~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~ 158 (228)
.|+++.+|....... ....+.| ..-|.++.|+|++.+++|++.|++|++|..... +.+..+........++.
T Consensus 592 RDRt~sl~~~~~~~~~e~~fa~~k~H--tRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTA 669 (764)
T KOG1063|consen 592 RDRTVSLYEVQEDIKDEFRFACLKAH--TRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTA 669 (764)
T ss_pred cCceEEeeeeecccchhhhhcccccc--ceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceee
Confidence 999999998754321 1223333 889999999999999999999999999998877 44444333345666777
Q ss_pred EEECC----CCcEEEEeeCCCCeEEEEEcCCcceeEE---------e--ecCCCCCcEEEEeCCC----------CcEEE
Q 040370 159 AVFND----TEEFVLSIDEPSNEIVIWDALTAEKVAK---------W--SSNHIGAPRWIEHSPA----------EAAFI 213 (228)
Q Consensus 159 ~~~~~----~~~~~~~~~~~d~~i~i~d~~~~~~~~~---------~--~~~~~~~v~~~~~~~~----------~~~l~ 213 (228)
+.+.| +..++++.|-+.|.|.+|.........+ . ..+|.+.|+.+.|.|. ...|+
T Consensus 670 v~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la 749 (764)
T KOG1063|consen 670 VAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLA 749 (764)
T ss_pred EEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEe
Confidence 76654 4455888888889999998651111000 0 1357778999999974 23579
Q ss_pred EecCCCCEEEeeec
Q 040370 214 TCGTDRSVRFWKEI 227 (228)
Q Consensus 214 s~~~dg~i~vwd~~ 227 (228)
+|+.|..++++++.
T Consensus 750 ~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 750 VGGDDESVRIFNVD 763 (764)
T ss_pred eecccceeEEeecc
Confidence 99999999999864
No 156
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.1e-22 Score=144.59 Aligned_cols=199 Identities=15% Similarity=0.197 Sum_probs=156.7
Q ss_pred EEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeE
Q 040370 23 RSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRS 102 (228)
Q Consensus 23 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 102 (228)
.+++|+++|..+++|+.||.+|||+..+...+..... |.+.|.++.|+|||+.|++-+.| ..+||+++++..+..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~----~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIA----HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHh----hcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh
Confidence 7899999999999999999999999877665443332 27889999999999999999999 999999999977766
Q ss_pred EecccccceeEEEEECCCC---C--EEEEeeCCCeEEEEEccCCee---EEEEecceeeeeeeEEEECCCCcEEEEeeCC
Q 040370 103 IVGAHGTAEATSANFTKDQ---R--FVLSCGKDSTVKLWEVSSGRL---VKQYLGATHTQLRFQAVFNDTEEFVLSIDEP 174 (228)
Q Consensus 103 ~~~~~~~~~i~~~~~~~~~---~--~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
............+.|+.++ . .++.....+.|+.||+..... ++..+.......+.++..+++|++++.++.
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~- 301 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM- 301 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc-
Confidence 6543335566778888776 2 233334456677777654322 111111113456889999999999998666
Q ss_pred CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 175 SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 175 d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
||.|-+++..+.+.....+..|...|+.+.|+|+.+++++.+.|....+..+.
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 89999999999999999888999999999999999999999999988887653
No 157
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.90 E-value=2e-22 Score=142.75 Aligned_cols=206 Identities=19% Similarity=0.262 Sum_probs=151.1
Q ss_pred EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcc--------c-----ceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVN--------T-----FQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~--------~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
.+..|...|+++.|+|+|+.||+|+.+|.|.+|... + .+.........+ |...|..++|+|+++++
T Consensus 60 ~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l 138 (434)
T KOG1009|consen 60 SLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFL 138 (434)
T ss_pred cccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecc-cccchhhhhccCCCcee
Confidence 344799999999999999999999999999999876 2 111112222223 37899999999999999
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe------------
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL------------ 148 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~------------ 148 (228)
++++.|..+++||+..|+....+..| ...+..++|.|-++++++-+.|...+.+.+...+.+....
T Consensus 139 ~s~s~dns~~l~Dv~~G~l~~~~~dh--~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~ 216 (434)
T KOG1009|consen 139 VSGSVDNSVRLWDVHAGQLLAILDDH--EHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNER 216 (434)
T ss_pred eeeeccceEEEEEeccceeEeecccc--ccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCC
Confidence 99999999999999999999988877 6688999999999999998888866666554322111110
Q ss_pred ---------cceeeeeeeEEEECCCCcE----------------------------------------------------
Q 040370 149 ---------GATHTQLRFQAVFNDTEEF---------------------------------------------------- 167 (228)
Q Consensus 149 ---------~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 167 (228)
...........+|+|+|..
T Consensus 217 e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~e 296 (434)
T KOG1009|consen 217 EGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYE 296 (434)
T ss_pred CcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEE
Confidence 0000000111222222222
Q ss_pred -----------------EEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEE
Q 040370 168 -----------------VLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRF 223 (228)
Q Consensus 168 -----------------~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v 223 (228)
+++.+. ...+++||..+..++.....-|...++.++|+++|..|+..|.||...+
T Consensus 297 lrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 297 LRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred eccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 333333 3678888888888887776779999999999999999999999997654
No 158
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=2.3e-22 Score=149.87 Aligned_cols=210 Identities=17% Similarity=0.279 Sum_probs=151.2
Q ss_pred EEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeEEE
Q 040370 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAIRL 91 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~i 91 (228)
.....|...|..+.|-|....|++++.|.++++||++..++.... ...+| .+.|.+++|.|. ...|++|+.||.|.|
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~-~~~GH-~~SvkS~cf~~~n~~vF~tGgRDg~ill 171 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR-LNLGH-TGSVKSECFMPTNPAVFCTGGRDGEILL 171 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce-eeccc-ccccchhhhccCCCcceeeccCCCcEEE
Confidence 445579999999999997778999999999999999998876553 33344 899999999995 558899999999999
Q ss_pred EeCCCCce--------------------e-------eEEecccccceeEE---EEECCCCCEEEEeeC-CCeEEEEEccC
Q 040370 92 WDGVSANC--------------------V-------RSIVGAHGTAEATS---ANFTKDQRFVLSCGK-DSTVKLWEVSS 140 (228)
Q Consensus 92 wd~~~~~~--------------------~-------~~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-d~~i~~wd~~~ 140 (228)
||++-... . ..... ....|.+ +.+..|...|++++. |+.|+|||++.
T Consensus 172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA--~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk 249 (720)
T KOG0321|consen 172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA--ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRK 249 (720)
T ss_pred EEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc--ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecc
Confidence 99764320 0 00011 1223333 445567888998887 99999999997
Q ss_pred CeeEEEEe------ccee---eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe-ecCCCCC--cEEEEeCCC
Q 040370 141 GRLVKQYL------GATH---TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW-SSNHIGA--PRWIEHSPA 208 (228)
Q Consensus 141 ~~~~~~~~------~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~--v~~~~~~~~ 208 (228)
........ .+.+ ...+.++.....|.++++.+. |+.|++|++.+...-... ..++... -..-..+|+
T Consensus 250 ~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd 328 (720)
T KOG0321|consen 250 NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPD 328 (720)
T ss_pred cccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeeeecCCC
Confidence 65433221 1112 345567777888999999888 899999999875432222 1222211 112346899
Q ss_pred CcEEEEecCCCCEEEeeec
Q 040370 209 EAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 209 ~~~l~s~~~dg~i~vwd~~ 227 (228)
+.++++|+.|....+|.+.
T Consensus 329 ~~~l~SgSsd~~ayiw~vs 347 (720)
T KOG0321|consen 329 DCSLLSGSSDEQAYIWVVS 347 (720)
T ss_pred CceEeccCCCcceeeeeec
Confidence 9999999999999999863
No 159
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=1.5e-22 Score=139.95 Aligned_cols=213 Identities=15% Similarity=0.245 Sum_probs=164.4
Q ss_pred CCcCCccccceeEEEeecCcce---EEEEEeCCCCEEEEecCCCeEEEEEc-ccceEEee---eccceeeeccceeeEEe
Q 040370 1 FFDFSKATAKRAFRVIQDTHNV---RSVSFHPSGDFLLAGTDHPIAHLYDV-NTFQCYLS---ANVPEISVNGAINQVRY 73 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~l~~~~~d~~i~vw~~-~~~~~~~~---~~~~~~~~~~~i~~~~~ 73 (228)
+||+-+++.+..++...|.+++ .+++|+|||.+|++|. ...|+++|+ +.|..... .........+-|.+++|
T Consensus 137 ~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~ 215 (406)
T KOG2919|consen 137 LWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAF 215 (406)
T ss_pred eeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeec
Confidence 5888888888888888887655 5799999999999776 578999999 44432211 11112222677899999
Q ss_pred CC-CCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-CCeEEEEEccCCe-eEEEEecc
Q 040370 74 SS-TGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-DSTVKLWEVSSGR-LVKQYLGA 150 (228)
Q Consensus 74 ~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~-~~~~~~~~ 150 (228)
+| +.+.++.|+....+-|+.-..+.++..+.+| .+.|+.++|.++|+.|++|+. |-.|..||+|..+ ++..+..+
T Consensus 216 sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh--~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rh 293 (406)
T KOG2919|consen 216 SPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH--GGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERH 293 (406)
T ss_pred cCCCCcceeeecccceeeeEecCCCCceeeeccc--CCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhh
Confidence 99 5568999999999999998888888888765 789999999999999999985 6789999999643 45555544
Q ss_pred ee-eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC-cceeEEeecCCCCCcEEEEeCCCCcEEEEecCC
Q 040370 151 TH-TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT-AEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTD 218 (228)
Q Consensus 151 ~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 218 (228)
.. ..........|.++.+++++. ||.|++||++. +..+..+ ..|...++.++++|--.++++++..
T Consensus 294 v~~TNQRI~FDld~~~~~LasG~t-dG~V~vwdlk~~gn~~sv~-~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 294 VGDTNQRILFDLDPKGEILASGDT-DGSVRVWDLKDLGNEVSVT-GNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccCccceEEEecCCCCceeeccCC-CccEEEEecCCCCCccccc-ccccccccceecCcccceeeeccCc
Confidence 33 444556667788888777544 89999999998 6656665 6788999999999998888888754
No 160
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=3.5e-22 Score=150.08 Aligned_cols=207 Identities=18% Similarity=0.314 Sum_probs=165.4
Q ss_pred EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcc-cceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEE
Q 040370 14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVN-TFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLW 92 (228)
Q Consensus 14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw 92 (228)
-+.+|...|+.++|+|.|++|++.+.|.+-+++-.- .......+..++.| ...++|++|-+....|++|.....+|+|
T Consensus 356 ~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiH-GyDl~c~~~vn~~~~FVSgAdEKVlRvF 434 (764)
T KOG1063|consen 356 VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIH-GYDLTCLSFVNEDLQFVSGADEKVLRVF 434 (764)
T ss_pred ccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccc-cccceeeehccCCceeeecccceeeeee
Confidence 345899999999999999999999999999998765 22234455556666 8899999999866679999999999999
Q ss_pred eCCC-------------------------------------------Cce----e-------------------------
Q 040370 93 DGVS-------------------------------------------ANC----V------------------------- 100 (228)
Q Consensus 93 d~~~-------------------------------------------~~~----~------------------------- 100 (228)
+... |.. .
T Consensus 435 ~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tL 514 (764)
T KOG1063|consen 435 EAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTL 514 (764)
T ss_pred cCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhcc
Confidence 7210 000 0
Q ss_pred ----eEEecccccceeEEEEECCCCCEEEEeeCCC-----eEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370 101 ----RSIVGAHGTAEATSANFTKDQRFVLSCGKDS-----TVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI 171 (228)
Q Consensus 101 ----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
.++. .|..+|.+++.+|+++.+++++... .|++|+..+-.....+.. |.-.++.+.|+|+++++++.
T Consensus 515 wPEv~KLY--GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~--HsLTVT~l~FSpdg~~LLsv 590 (764)
T KOG1063|consen 515 WPEVHKLY--GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG--HSLTVTRLAFSPDGRYLLSV 590 (764)
T ss_pred chhhHHhc--cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc--cceEEEEEEECCCCcEEEEe
Confidence 0001 1478999999999999999998653 599999988877777776 78889999999999999997
Q ss_pred eCCCCeEEEEEcCCcceeE---EeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 172 DEPSNEIVIWDALTAEKVA---KWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 172 ~~~d~~i~i~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
+. |+++.+|......... .....|..-|.++.|+|++.+++|+|.|..|++|..
T Consensus 591 sR-DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 591 SR-DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE 647 (764)
T ss_pred ec-CceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence 76 8999999875433221 123689999999999999999999999999999975
No 161
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=6e-23 Score=141.94 Aligned_cols=211 Identities=14% Similarity=0.213 Sum_probs=157.5
Q ss_pred EEEeecCcceEEEEEeCC-CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370 13 FRVIQDTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL 91 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 91 (228)
-.+.+|...|+.+.++|+ .+++++++.|..|++|++++..++..+....+| ...|.++.|+++|.+|++|+.|.++++
T Consensus 129 ~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egH-rdeVLSvD~~~~gd~i~ScGmDhslk~ 207 (385)
T KOG1034|consen 129 KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGH-RDEVLSVDFSLDGDRIASCGMDHSLKL 207 (385)
T ss_pred cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccc-cCcEEEEEEcCCCCeeeccCCcceEEE
Confidence 345689999999999995 578899999999999999999999999888777 999999999999999999999999999
Q ss_pred EeCCCCceeeEEe---------------c-----------ccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC-Cee-
Q 040370 92 WDGVSANCVRSIV---------------G-----------AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS-GRL- 143 (228)
Q Consensus 92 wd~~~~~~~~~~~---------------~-----------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~- 143 (228)
|++...+....+. . ..|...|-|+.|- |+++++-+-++.|..|.... .+.
T Consensus 208 W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~ 285 (385)
T KOG1034|consen 208 WRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESI 285 (385)
T ss_pred EecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhh
Confidence 9987432111110 0 0113333444443 67899999999999998721 111
Q ss_pred ------------EEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee---cCCCCCcEEEEeCCC
Q 040370 144 ------------VKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS---SNHIGAPRWIEHSPA 208 (228)
Q Consensus 144 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~ 208 (228)
+..+..+..........+.|-++.++++.. .|.+.+||++..++..... ......|...+|+.|
T Consensus 286 ~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq-~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~d 364 (385)
T KOG1034|consen 286 HNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ-SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRD 364 (385)
T ss_pred hccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccC-CCcEEEEECCCCCCccCceEEeccccceeeeeeeccc
Confidence 222222222334455677788888887665 6999999999877642211 123456899999999
Q ss_pred CcEEEEecCCCCEEEeeec
Q 040370 209 EAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 209 ~~~l~s~~~dg~i~vwd~~ 227 (228)
+..|+....|++|.-||..
T Consensus 365 gs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 365 GSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CcEEEEEeCCCcEEEEEee
Confidence 9999999999999999863
No 162
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=1e-20 Score=137.83 Aligned_cols=203 Identities=14% Similarity=0.234 Sum_probs=159.4
Q ss_pred eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370 12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL 91 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 91 (228)
.+...+|..+...++.+|+.+++++++.|+.+++|+ ..+....... ..++.|+.|+|.| .++.|...|...+
T Consensus 361 ~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~-----~d~~~~~~fhpsg-~va~Gt~~G~w~V 432 (626)
T KOG2106|consen 361 TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII-----EDPAECADFHPSG-VVAVGTATGRWFV 432 (626)
T ss_pred eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe-----cCceeEeeccCcc-eEEEeeccceEEE
Confidence 345568999999999999999999999999999999 3344443333 6788999999999 8999999999999
Q ss_pred EeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370 92 WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI 171 (228)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
.|.++...+..-.. ..+++++.|+|+|.+||.|+.|+.|++|-+..........+..+..++..+.|+++++++.+-
T Consensus 433 ~d~e~~~lv~~~~d---~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~ 509 (626)
T KOG2106|consen 433 LDTETQDLVTIHTD---NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSN 509 (626)
T ss_pred EecccceeEEEEec---CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEec
Confidence 99998655544433 678999999999999999999999999999765544444343355889999999999998886
Q ss_pred eCCCCeEEEEEcCCcc--------------------------------------------------------------ee
Q 040370 172 DEPSNEIVIWDALTAE--------------------------------------------------------------KV 189 (228)
Q Consensus 172 ~~~d~~i~i~d~~~~~--------------------------------------------------------------~~ 189 (228)
+. |-.|..|....-+ ..
T Consensus 510 S~-d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~ 588 (626)
T KOG2106|consen 510 SG-DYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAP 588 (626)
T ss_pred cC-ceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCccc
Confidence 55 6778888431110 00
Q ss_pred EEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 190 AKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 190 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
.....+|.+-|.+++|.-+...|++.+.|..|..|++
T Consensus 589 ~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 589 SHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred ceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 0012468888999999888888888889999999986
No 163
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=2e-21 Score=134.35 Aligned_cols=206 Identities=17% Similarity=0.224 Sum_probs=158.4
Q ss_pred cCcceEEEEEe-------CCCCEEEEecCCCeEEEEEcccceEEeeeccceee-eccceeeEEeCCCCCeEEEEecCCeE
Q 040370 18 DTHNVRSVSFH-------PSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEIS-VNGAINQVRYSSTGGMYVTASKDGAI 89 (228)
Q Consensus 18 ~~~~v~~~~~~-------~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v 89 (228)
....|...+|- |+.+++|+.+.+.-|++||.-+|+....+.....- .-....+++|+|||.+|++|. ...|
T Consensus 103 eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krci 181 (406)
T KOG2919|consen 103 EGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCI 181 (406)
T ss_pred cCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceE
Confidence 45677787775 67789999999999999999999977666543110 012457899999999998875 5789
Q ss_pred EEEeC-CCCceeeEEecc-----cccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEEC
Q 040370 90 RLWDG-VSANCVRSIVGA-----HGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFN 162 (228)
Q Consensus 90 ~iwd~-~~~~~~~~~~~~-----~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (228)
+++|+ +.|+.-...... ...+.+.+++|+| +.+.++.|+....+-+|.-..+.++..+-+ |...++.+.|.
T Consensus 182 rvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg--h~gGvThL~~~ 259 (406)
T KOG2919|consen 182 RVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG--HGGGVTHLQWC 259 (406)
T ss_pred EEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc--cCCCeeeEEec
Confidence 99999 555422211111 1156788999999 566899999999999998888888888765 78889999999
Q ss_pred CCCcEEEEeeCCCCeEEEEEcCCcce-eEEeecCCCC-CcEE--EEeCCCCcEEEEecCCCCEEEeeec
Q 040370 163 DTEEFVLSIDEPSNEIVIWDALTAEK-VAKWSSNHIG-APRW--IEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 163 ~~~~~~~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~-~v~~--~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
++|+.+++++..|..|..||+|.... +..+ ..|.+ .-.. ....|++++|++|+.||.|++||+.
T Consensus 260 edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L-~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 260 EDGNKLFSGARKDDKILCWDIRYSRDPVYAL-ERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred cCcCeecccccCCCeEEEEeehhccchhhhh-hhhccCccceEEEecCCCCceeeccCCCccEEEEecC
Confidence 99999999999999999999997654 3344 45544 2223 4456899999999999999999973
No 164
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.1e-22 Score=147.99 Aligned_cols=215 Identities=15% Similarity=0.154 Sum_probs=156.4
Q ss_pred ccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce-------EEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 8 TAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ-------CYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 8 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
..++.+++.+|.++|.|+++.++++.+++|+-||+|+.|++.... .........+| ...++.+++|+....|
T Consensus 333 ~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Gh-tdavw~l~~s~~~~~L 411 (577)
T KOG0642|consen 333 DVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGH-TDAVWLLALSSTKDRL 411 (577)
T ss_pred ceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceecc-ccceeeeeecccccce
Confidence 346788889999999999999999999999999999999765211 11112223344 8999999999988899
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCC-CEEEEeeCCCeEEEEEccCCeeEEEEecce-----eee
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQ-RFVLSCGKDSTVKLWEVSSGRLVKQYLGAT-----HTQ 154 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-----~~~ 154 (228)
++|+.||++++|+...... ..+......+.-.++.+-... ...++...-+.--++|+.....+..+.... ...
T Consensus 412 lscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~ 490 (577)
T KOG0642|consen 412 LSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYP 490 (577)
T ss_pred eeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccC
Confidence 9999999999999876655 344333323444556655433 222232223333344444444444333211 123
Q ss_pred eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
.+..+..+|.....+.+.. |+.|+++|..++..+... ..|...++++++.|+|.+|++++.|+.+++|++
T Consensus 491 ~in~vVs~~~~~~~~~~he-d~~Ir~~dn~~~~~l~s~-~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 491 QINKVVSHPTADITFTAHE-DRSIRFFDNKTGKILHSM-VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred ccceEEecCCCCeeEeccc-CCceecccccccccchhe-eeccceecceeecCCCceEEeecCCceeehhhc
Confidence 4556778888877777555 899999999999999988 789999999999999999999999999999986
No 165
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=1e-22 Score=152.34 Aligned_cols=207 Identities=19% Similarity=0.254 Sum_probs=152.4
Q ss_pred ecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeec----cceeeeccceeeEEeCC-CCCeEEEEecCCeEE
Q 040370 17 QDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSAN----VPEISVNGAINQVRYSS-TGGMYVTASKDGAIR 90 (228)
Q Consensus 17 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~ 90 (228)
.....|+.+.|.| |...||++++||.|++|.+..+....... ....| ...|+++.|+| -.+.|++++.|.+|+
T Consensus 625 ~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h-~eKI~slRfHPLAadvLa~asyd~Ti~ 703 (1012)
T KOG1445|consen 625 FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIH-GEKITSLRFHPLAADVLAVASYDSTIE 703 (1012)
T ss_pred ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecc-cceEEEEEecchhhhHhhhhhccceee
Confidence 4567899999999 88999999999999999998654322222 22233 78899999999 467899999999999
Q ss_pred EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee-EEEEecceeeeeeeEEEECCCCcEEE
Q 040370 91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL-VKQYLGATHTQLRFQAVFNDTEEFVL 169 (228)
Q Consensus 91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (228)
+||+++++....+.+| ...|..++|+|+|+.+++.+.||+|++|..++++. ++.-.+. .......+.|.-++++++
T Consensus 704 lWDl~~~~~~~~l~gH--tdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gp-vgtRgARi~wacdgr~vi 780 (1012)
T KOG1445|consen 704 LWDLANAKLYSRLVGH--TDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGP-VGTRGARILWACDGRIVI 780 (1012)
T ss_pred eeehhhhhhhheeccC--cCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCC-ccCcceeEEEEecCcEEE
Confidence 9999999999999887 78999999999999999999999999999987654 3322222 123345677888999999
Q ss_pred EeeCC---CCeEEEEEcCCcc--eeEEeecCCCCCcEEEEeCCC-CcEEEEecCCCCEEEeeec
Q 040370 170 SIDEP---SNEIVIWDALTAE--KVAKWSSNHIGAPRWIEHSPA-EAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 170 ~~~~~---d~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~ 227 (228)
++|.+ .+.|.+||..+-. .+.+....-.-.+.--.+.+| +.++++|-.|..|.+|.+.
T Consensus 781 v~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 781 VVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred EecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEec
Confidence 98752 3678888876533 232221111111111223444 3467788889999999864
No 166
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.89 E-value=3.5e-21 Score=146.84 Aligned_cols=223 Identities=17% Similarity=0.162 Sum_probs=163.5
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceE--EeeeccceeeeccceeeEEeCCCC
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQC--YLSANVPEISVNGAINQVRYSSTG 77 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~ 77 (228)
||++..+ ..+ .....-..+|+|++|+| +..+++.|+.+|+|.+||+..+.. ..........|..+++.+.|..+.
T Consensus 226 vW~~~~p-~~P-e~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~ 303 (555)
T KOG1587|consen 226 VWSLKNP-NTP-ELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNE 303 (555)
T ss_pred EEecCCC-CCc-eEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccC
Confidence 5888866 222 23345678999999999 778889999999999999998765 444444455568999999997643
Q ss_pred --CeEEEEecCCeEEEEeCCCCceeeEE-----ec-----ccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeE
Q 040370 78 --GMYVTASKDGAIRLWDGVSANCVRSI-----VG-----AHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLV 144 (228)
Q Consensus 78 --~~l~~~~~dg~v~iwd~~~~~~~~~~-----~~-----~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~ 144 (228)
.-|++++.||.|..|+++.-...... .. ......++++.|.+ +...++.|+.+|.|..-.-...+..
T Consensus 304 ~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~ 383 (555)
T KOG1587|consen 304 HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPA 383 (555)
T ss_pred CCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccc
Confidence 45999999999999988754321110 00 11245678999998 5677999999998887433222111
Q ss_pred E--EEe----cceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcC-CcceeEEeecCCCCCcEEEEeCCCC-cEEEEec
Q 040370 145 K--QYL----GATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL-TAEKVAKWSSNHIGAPRWIEHSPAE-AAFITCG 216 (228)
Q Consensus 145 ~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~ 216 (228)
. .++ ...|...+..+.++|-+..++.+++ |..++||... ...++..+ ..+...+++++|||.. ..++++.
T Consensus 384 ~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~-~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 384 PEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSL-DSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred ccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhh-hhccceeeeeEEcCcCceEEEEEc
Confidence 1 111 1226778899999999988888777 8999999987 55555555 6677789999999954 5788888
Q ss_pred CCCCEEEeeec
Q 040370 217 TDRSVRFWKEI 227 (228)
Q Consensus 217 ~dg~i~vwd~~ 227 (228)
.||.+.+||+.
T Consensus 462 ~~G~l~iWDLl 472 (555)
T KOG1587|consen 462 GDGNLDIWDLL 472 (555)
T ss_pred CCCceehhhhh
Confidence 89999999986
No 167
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=4.4e-20 Score=139.17 Aligned_cols=218 Identities=10% Similarity=0.127 Sum_probs=161.7
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEE--------eeecc-ce----------
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCY--------LSANV-PE---------- 61 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~--------~~~~~-~~---------- 61 (228)
|||.+++. ....+.+|.+.|.|++|+.+|+.+|+|+.|..|.+|+.+-...+ +.... +-
T Consensus 37 iyD~ndG~--llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLs 114 (1081)
T KOG1538|consen 37 VYDTSDGT--LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLS 114 (1081)
T ss_pred EEeCCCcc--cccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchh
Confidence 35555443 44556689999999999999999999999999999986532111 10000 00
Q ss_pred --------------eeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEec-ccccceeEEEEECCCC-----
Q 040370 62 --------------ISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVG-AHGTAEATSANFTKDQ----- 121 (228)
Q Consensus 62 --------------~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~i~~~~~~~~~----- 121 (228)
.....++.+++|..||++++.|-.||+|.+-+- +++....+.. .....+|.+++|+|..
T Consensus 115 dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~ 193 (1081)
T KOG1538|consen 115 DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRN 193 (1081)
T ss_pred hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCcc
Confidence 011456888999999999999999999999874 4444444433 2337799999999954
Q ss_pred CEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcE
Q 040370 122 RFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPR 201 (228)
Q Consensus 122 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~ 201 (228)
..++......++.+|.+. |+.+..-+. -.-...++.+.++|.|++.+|+ |+.+.+|- +.|-.+.+. ......|+
T Consensus 194 di~aV~DW~qTLSFy~Ls-G~~Igk~r~--L~FdP~CisYf~NGEy~LiGGs-dk~L~~fT-R~GvrLGTv-g~~D~WIW 267 (1081)
T KOG1538|consen 194 DILAVADWGQTLSFYQLS-GKQIGKDRA--LNFDPCCISYFTNGEYILLGGS-DKQLSLFT-RDGVRLGTV-GEQDSWIW 267 (1081)
T ss_pred ceEEEEeccceeEEEEec-ceeeccccc--CCCCchhheeccCCcEEEEccC-CCceEEEe-ecCeEEeec-cccceeEE
Confidence 467777788888888774 454442221 2333467888999999999888 79999997 667777776 45677899
Q ss_pred EEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 202 WIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 202 ~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.++..|++++++.|+.||+|..|++.
T Consensus 268 tV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 268 TVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEEccCCceEEEEEccCeeehhhhH
Confidence 99999999999999999999988864
No 168
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.7e-21 Score=134.41 Aligned_cols=211 Identities=15% Similarity=0.199 Sum_probs=144.9
Q ss_pred cceeEEEeecCcceEEEEEeC--CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe--
Q 040370 9 AKRAFRVIQDTHNVRSVSFHP--SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS-- 84 (228)
Q Consensus 9 ~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-- 84 (228)
.+....+.+++..++.++|.. ....+.+++.||+|++||++.............. ..+..|++.+..++.+++|.
T Consensus 60 g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~-~~~f~~ld~nck~~ii~~GtE~ 138 (376)
T KOG1188|consen 60 GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS-GTPFICLDLNCKKNIIACGTEL 138 (376)
T ss_pred hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-CCcceEeeccCcCCeEEecccc
Confidence 344555667888899999977 4677889999999999999987655444333211 35677787776778888875
Q ss_pred --cCCeEEEEeCCCCce-eeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCee----EEEEecceeeeee
Q 040370 85 --KDGAIRLWDGVSANC-VRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRL----VKQYLGATHTQLR 156 (228)
Q Consensus 85 --~dg~v~iwd~~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~----~~~~~~~~~~~~~ 156 (228)
.+-.|.+||+++.+. +..+...| ...|+++.|+| +.+.|++|+.||-|.+||+..... ...+. +...+
T Consensus 139 ~~s~A~v~lwDvR~~qq~l~~~~eSH-~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN---~~sSI 214 (376)
T KOG1188|consen 139 TRSDASVVLWDVRSEQQLLRQLNESH-NDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN---HGSSI 214 (376)
T ss_pred ccCceEEEEEEeccccchhhhhhhhc-cCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc---cccee
Confidence 367899999998776 66665544 78899999999 668999999999999999975421 11111 33344
Q ss_pred eEEEECCCC-cEEEEeeCCCCeEEEEEcCCcc------------------------------------------------
Q 040370 157 FQAVFNDTE-EFVLSIDEPSNEIVIWDALTAE------------------------------------------------ 187 (228)
Q Consensus 157 ~~~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~------------------------------------------------ 187 (228)
..+.|...+ +.+.+... .....+|+++.+.
T Consensus 215 ~~igw~~~~ykrI~clTH-~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~ 293 (376)
T KOG1188|consen 215 HLIGWLSKKYKRIMCLTH-METFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTI 293 (376)
T ss_pred eeeeeecCCcceEEEEEc-cCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeE
Confidence 455554444 11222222 3455555543321
Q ss_pred -------------eeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 188 -------------KVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 188 -------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
.+..+..+|..-|+++.|...+..+.|||+||.+.+|.
T Consensus 294 ~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 294 FPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred EEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 12222234666677788888888999999999999997
No 169
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.87 E-value=2.4e-19 Score=132.59 Aligned_cols=206 Identities=12% Similarity=0.170 Sum_probs=137.8
Q ss_pred cCcceEEEEEeCCCCEEEEecC-CCeEEEEEcccce-EEeeeccceeeeccceeeEEeCCCCCeEEEEe-cCCeEEEEeC
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTD-HPIAHLYDVNTFQ-CYLSANVPEISVNGAINQVRYSSTGGMYVTAS-KDGAIRLWDG 94 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~-d~~i~vw~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~iwd~ 94 (228)
.......++++|++++|++++. ++.|.+|++++.. ........ .+ ......++++|+++++++++ .++.|.+||+
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTL 155 (330)
T ss_pred CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEE
Confidence 3445678999999998887764 8899999997432 11111111 01 23467789999999886554 5699999999
Q ss_pred CCCceee-----EEecccccceeEEEEECCCCCEEEEeeC-CCeEEEEEccC--Ce--eEEEEecce----eeeeeeEEE
Q 040370 95 VSANCVR-----SIVGAHGTAEATSANFTKDQRFVLSCGK-DSTVKLWEVSS--GR--LVKQYLGAT----HTQLRFQAV 160 (228)
Q Consensus 95 ~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~wd~~~--~~--~~~~~~~~~----~~~~~~~~~ 160 (228)
++...+. ...... ......+.|+|++++++++.. ++.|.+||+.. ++ .+..+.... .......+.
T Consensus 156 ~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~ 234 (330)
T PRK11028 156 SDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH 234 (330)
T ss_pred CCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE
Confidence 7633221 111111 334578999999999988876 89999999973 22 233332110 112233578
Q ss_pred ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec--CCCCCcEEEEeCCCCcEEEEecC-CCCEEEeee
Q 040370 161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS--NHIGAPRWIEHSPAEAAFITCGT-DRSVRFWKE 226 (228)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~ 226 (228)
++|++++++++...++.|.+|++........+.. .-......+.++|+|++|+++.. ++.|.+|++
T Consensus 235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 9999999999877789999999865432212110 11234567999999999998775 899999976
No 170
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.87 E-value=1.4e-18 Score=122.21 Aligned_cols=160 Identities=11% Similarity=0.243 Sum_probs=131.8
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe--cCCeEEEEeCCC
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS--KDGAIRLWDGVS 96 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~v~iwd~~~ 96 (228)
..+|.++.++ .++|++.-.+ .|+|||+++.+.+..+.....+ ...+.++.+++.+.+++-=+ ..|.|.+||+.+
T Consensus 87 pt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n-~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 87 PTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPN-PKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred CCceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCC-ccceEeeccCCCCceEEecCCCCCceEEEEEccc
Confidence 5667777774 5667777665 4999999999988777654323 44566666666677887433 468999999999
Q ss_pred CceeeEEecccccceeEEEEECCCCCEEEEeeCCCe-EEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC
Q 040370 97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDST-VKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS 175 (228)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 175 (228)
-+....+..| ++++.+++|+++|.+|||++..|+ |||+.+.+|+.+..++.......+.+++|+|++.++.+++. .
T Consensus 163 l~~v~~I~aH--~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~-T 239 (391)
T KOG2110|consen 163 LQPVNTINAH--KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN-T 239 (391)
T ss_pred ceeeeEEEec--CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC-C
Confidence 9999999876 889999999999999999999987 89999999999999988777888999999999999998877 5
Q ss_pred CeEEEEEcCC
Q 040370 176 NEIVIWDALT 185 (228)
Q Consensus 176 ~~i~i~d~~~ 185 (228)
++|++|.+..
T Consensus 240 eTVHiFKL~~ 249 (391)
T KOG2110|consen 240 ETVHIFKLEK 249 (391)
T ss_pred CeEEEEEecc
Confidence 9999998753
No 171
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.8e-20 Score=130.40 Aligned_cols=190 Identities=18% Similarity=0.212 Sum_probs=148.7
Q ss_pred CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC--CCCeEEEEecCCeEEEEeCCCCceeeEEeccc-c
Q 040370 32 DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS--TGGMYVTASKDGAIRLWDGVSANCVRSIVGAH-G 108 (228)
Q Consensus 32 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~ 108 (228)
..+|++..+|.|++||..+++.+..+..+ ...++.+.|.. ....+.+|+.||+|++||++.......+.... .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~----~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGP----PATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCC----CCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence 56889999999999999998877777655 55677888866 45679999999999999999876554444322 2
Q ss_pred cceeEEEEECCCCCEEEEee----CCCeEEEEEccCCee-EEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEc
Q 040370 109 TAEATSANFTKDQRFVLSCG----KDSTVKLWEVSSGRL-VKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDA 183 (228)
Q Consensus 109 ~~~i~~~~~~~~~~~l~~~~----~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~ 183 (228)
+.+..+++.+-.++.+++|. .+..+.+||+|..+. +..+. ..|..-++++.|+|....++.+|+.||-|.+||+
T Consensus 117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~-eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN-ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh-hhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 35677777776778888876 467899999998777 44443 4488899999999999999999999999999998
Q ss_pred CCcce---eEEeecCCCCCcEEEEeCCCC-cEEEEecCCCCEEEeeec
Q 040370 184 LTAEK---VAKWSSNHIGAPRWIEHSPAE-AAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 184 ~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~ 227 (228)
+.... +... ..|...|..+.|..++ +.+.+-+..+...+|++.
T Consensus 196 ~~d~EeDaL~~v-iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 196 KKDNEEDALLHV-INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE 242 (376)
T ss_pred CCCcchhhHHHh-hcccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence 76532 2222 3677889999998876 457777888899999863
No 172
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.87 E-value=1e-19 Score=138.62 Aligned_cols=196 Identities=15% Similarity=0.183 Sum_probs=136.0
Q ss_pred EEEeecCcceEEEEEeCCCCEEEEecCC---CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe-cCCe
Q 040370 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDH---PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS-KDGA 88 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~ 88 (228)
..+..|...+.+.+|+|+|+.|+.++.+ ..|++||+.+++....... .+....++|+|+|+.|+.++ .+|.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~-----~g~~~~~~wSPDG~~La~~~~~~g~ 271 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF-----RGHNGAPAFSPDGSRLAFASSKDGV 271 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC-----CCccCceeECCCCCEEEEEEecCCc
Confidence 3445677889999999999999877543 4799999988764332211 22345689999999888764 6787
Q ss_pred EEEE--eCCCCceeeEEecccccceeEEEEECCCCCEEEEee-CCCeEEEEEccCC-eeEEEEecceeeeeeeEEEECCC
Q 040370 89 IRLW--DGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCG-KDSTVKLWEVSSG-RLVKQYLGATHTQLRFQAVFNDT 164 (228)
Q Consensus 89 v~iw--d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 164 (228)
+.|| |+.+++. ..+..+ ...+....|+||++.|+.++ .++...+|++... .....+ . +.. ....|+|+
T Consensus 272 ~~Iy~~d~~~~~~-~~lt~~--~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~--~~~--~~~~~SpD 343 (429)
T PRK01742 272 LNIYVMGANGGTP-SQLTSG--AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G--GRG--YSAQISAD 343 (429)
T ss_pred EEEEEEECCCCCe-EeeccC--CCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c--CCC--CCccCCCC
Confidence 6555 6655553 344433 45677899999999777554 5778888877542 222222 2 121 34679999
Q ss_pred CcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 165 EEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 165 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
+++++..+. ..+.+||+.+++..... ..+ ....+.|+|+|++|+.++.++.+.+|++
T Consensus 344 G~~ia~~~~--~~i~~~Dl~~g~~~~lt-~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 344 GKTLVMING--DNVVKQDLTSGSTEVLS-STF--LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred CCEEEEEcC--CCEEEEECCCCCeEEec-CCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 999988765 34666999888754332 222 2356789999999999999999988875
No 173
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.87 E-value=5.9e-21 Score=128.61 Aligned_cols=146 Identities=12% Similarity=0.177 Sum_probs=113.1
Q ss_pred eEEEEecCCeEEEEeCCCCceeeEEec--------ccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC--eeEEEEe
Q 040370 79 MYVTASKDGAIRLWDGVSANCVRSIVG--------AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG--RLVKQYL 148 (228)
Q Consensus 79 ~l~~~~~dg~v~iwd~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--~~~~~~~ 148 (228)
++++|.++|.+.+||+.++..+..++. ..+..++.++.+.+.-..=++|+.+..+..|.+... .......
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 567888999999999998754433321 234788999999886666678888888999988643 2211111
Q ss_pred cceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 149 GATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
.......+..+...|+++.++++|- |+.||+|..++.+++..+ .-|...|++++|+|+..++|++|.|++|.+|++
T Consensus 247 ~~lknpGv~gvrIRpD~KIlATAGW-D~RiRVyswrtl~pLAVL-kyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 247 ITLKNPGVSGVRIRPDGKILATAGW-DHRIRVYSWRTLNPLAVL-KYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEecCCCccceEEccCCcEEeeccc-CCcEEEEEeccCCchhhh-hhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 1113334566777888888777655 899999999999999988 789999999999999999999999999999997
No 174
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.3e-19 Score=119.11 Aligned_cols=206 Identities=16% Similarity=0.228 Sum_probs=151.7
Q ss_pred ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceE------Eeeecccee---eeccceeeEEeCCCCCeE
Q 040370 10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQC------YLSANVPEI---SVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~------~~~~~~~~~---~~~~~i~~~~~~~~~~~l 80 (228)
.+.+...+|..+|..++|. ..+|++|+ ||.|+=|....... ......+.. ..-..|+++...|..+-+
T Consensus 53 ~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi 129 (325)
T KOG0649|consen 53 LKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI 129 (325)
T ss_pred cceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE
Confidence 3455557899999999997 45677766 59999997654322 111111100 003468999999988878
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeee-----
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQL----- 155 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~----- 155 (228)
+.++.|+.++-||+++|+..+.+.+| ...+.++.--.....+++|++||++|+||+++++.+..+....++..
T Consensus 130 ~~AgGD~~~y~~dlE~G~i~r~~rGH--tDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~ 207 (325)
T KOG0649|consen 130 LFAGGDGVIYQVDLEDGRIQREYRGH--TDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW 207 (325)
T ss_pred EEecCCeEEEEEEecCCEEEEEEcCC--cceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence 88889999999999999999999987 78899998766666799999999999999999999888754332211
Q ss_pred -eeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 156 -RFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 156 -~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
....+..-+..+++++++ ..+.+|.++..++...+ .-..++..+.|. .+.++++|..+.|.-|.+
T Consensus 208 g~wigala~~edWlvCGgG--p~lslwhLrsse~t~vf--pipa~v~~v~F~--~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 208 GKWIGALAVNEDWLVCGGG--PKLSLWHLRSSESTCVF--PIPARVHLVDFV--DDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred CceeEEEeccCceEEecCC--CceeEEeccCCCceEEE--ecccceeEeeee--cceEEEeccccceeeeee
Confidence 112344556778888766 78999999999988887 345677788885 446777887777777654
No 175
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.87 E-value=9.8e-19 Score=129.38 Aligned_cols=221 Identities=15% Similarity=0.204 Sum_probs=143.2
Q ss_pred CcCCccccceeEEEeecCcceEEEEEeCCCCEEEEec-CCCeEEEEEccc-ceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370 2 FDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGT-DHPIAHLYDVNT-FQCYLSANVPEISVNGAINQVRYSSTGGM 79 (228)
Q Consensus 2 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 79 (228)
||+.........+...+.+....++++|++++|++++ .++.|.+|+++. +.......... .+....++|+|++++
T Consensus 17 ~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~---~~~p~~i~~~~~g~~ 93 (330)
T PRK11028 17 WNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL---PGSPTHISTDHQGRF 93 (330)
T ss_pred EEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC---CCCceEEEECCCCCE
Confidence 5664322223344445566788899999999987664 578899999973 33221111111 334678999999998
Q ss_pred EEEEec-CCeEEEEeCCCC-ceeeEEecccccceeEEEEECCCCCEEEEee-CCCeEEEEEccCCeeEEE-----Eecce
Q 040370 80 YVTASK-DGAIRLWDGVSA-NCVRSIVGAHGTAEATSANFTKDQRFVLSCG-KDSTVKLWEVSSGRLVKQ-----YLGAT 151 (228)
Q Consensus 80 l~~~~~-dg~v~iwd~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~-----~~~~~ 151 (228)
+++++. ++.|.+|++++. .................++++|+++++++++ .++.|.+||+.+...+.. ....
T Consensus 94 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~- 172 (330)
T PRK11028 94 LFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV- 172 (330)
T ss_pred EEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-
Confidence 887764 889999998642 2211111111123457788999999886554 568999999976332211 1111
Q ss_pred eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC--cc--eeEEeec-----CCCCCcEEEEeCCCCcEEEEecC-CCCE
Q 040370 152 HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT--AE--KVAKWSS-----NHIGAPRWIEHSPAEAAFITCGT-DRSV 221 (228)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~--~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~-dg~i 221 (228)
.......+.|+|++++++++...++.|.+||+.. ++ ....+.. .+......+.++|++++|+++.. ++.|
T Consensus 173 ~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I 252 (330)
T PRK11028 173 EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLI 252 (330)
T ss_pred CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeE
Confidence 1233456899999999999887789999999973 22 2222211 11122346889999999988864 7899
Q ss_pred EEeee
Q 040370 222 RFWKE 226 (228)
Q Consensus 222 ~vwd~ 226 (228)
.+|++
T Consensus 253 ~v~~i 257 (330)
T PRK11028 253 SVFSV 257 (330)
T ss_pred EEEEE
Confidence 99986
No 176
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.4e-20 Score=133.69 Aligned_cols=212 Identities=11% Similarity=0.124 Sum_probs=162.2
Q ss_pred EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce---EEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370 15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ---CYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL 91 (228)
Q Consensus 15 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 91 (228)
+.+|.+-|+++.|+.++++|++|+.|..+++|+++..- ..+.+.....+|.+.|.|++|....+++++|..+++|..
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 45799999999999999999999999999999987532 112233334455789999999998999999999999999
Q ss_pred EeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe-eEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370 92 WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR-LVKQYLGATHTQLRFQAVFNDTEEFVLS 170 (228)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
.|+++.+.+..+......+.|..+..+|..+.|++.+.++.|.+||.+..+ ....+.....+.....+.|+|....+++
T Consensus 132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~ 211 (609)
T KOG4227|consen 132 HDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALIL 211 (609)
T ss_pred eecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEE
Confidence 999999988887765557799999999999999999999999999998765 3333332334556678889999988888
Q ss_pred eeCCCCeEEEEEcCCcceeEEeec---CC---CCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 171 IDEPSNEIVIWDALTAEKVAKWSS---NH---IGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 171 ~~~~d~~i~i~d~~~~~~~~~~~~---~~---~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
+.+..+.+.+||.+.......... +- ...-.++.|+|+|+.|++--.-..-.+||+
T Consensus 212 ~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~ 273 (609)
T KOG4227|consen 212 VNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF 273 (609)
T ss_pred eccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence 887789999999987654221111 11 122356789999988877655444444443
No 177
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=3.2e-20 Score=131.75 Aligned_cols=193 Identities=18% Similarity=0.270 Sum_probs=146.0
Q ss_pred CcceEEEEEeCCCC-EEEEecCCCeEEEEEcccceEE-----eeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEE
Q 040370 19 THNVRSVSFHPSGD-FLLAGTDHPIAHLYDVNTFQCY-----LSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLW 92 (228)
Q Consensus 19 ~~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw 92 (228)
..+|.++.|.++.. .+++|+.|..|++|.++.++.. ..+.....+|...|+++.|+|+|+.+++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46899999999665 9999999999999998764321 22222233458999999999999999999999999999
Q ss_pred eCC--------C-----C---ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeee
Q 040370 93 DGV--------S-----A---NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLR 156 (228)
Q Consensus 93 d~~--------~-----~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 156 (228)
-.. + . ...+.+.. +...+..++|+|+++++++++.|..+++||+..|+....+.. |...+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~--h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d--h~~yv 168 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRG--HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD--HEHYV 168 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecc--cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccc--ccccc
Confidence 765 2 1 11222233 378899999999999999999999999999999999988876 77788
Q ss_pred eEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee---------c---------CCCC----CcEEEEeCCCCcEEEE
Q 040370 157 FQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS---------S---------NHIG----APRWIEHSPAEAAFIT 214 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---------~---------~~~~----~v~~~~~~~~~~~l~s 214 (228)
..++|.|.+.++++-+. |...+.+.+...+...... . -|.. -...++|+|+|.+|++
T Consensus 169 qgvawDpl~qyv~s~s~-dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvt 247 (434)
T KOG1009|consen 169 QGVAWDPLNQYVASKSS-DRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVT 247 (434)
T ss_pred ceeecchhhhhhhhhcc-CcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEc
Confidence 99999999999988766 5766666654433222211 0 0111 2345789999999988
Q ss_pred ec
Q 040370 215 CG 216 (228)
Q Consensus 215 ~~ 216 (228)
.+
T Consensus 248 Pa 249 (434)
T KOG1009|consen 248 PA 249 (434)
T ss_pred cc
Confidence 64
No 178
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.85 E-value=1.7e-21 Score=140.45 Aligned_cols=196 Identities=16% Similarity=0.208 Sum_probs=167.8
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN 98 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 98 (228)
...-..+.++.+|.+++.|+..|.|..+|..++.....+.. ...|.++.|-.+.+++|++ ....+.||| +.|.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-----~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~Gt 201 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-----METVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGT 201 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-----hhhhhhhhhhcchHHHHhh-hhceEEEec-CCCc
Confidence 34557788999999999999999999999999887766654 6789999999888877766 457899999 5788
Q ss_pred eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeE
Q 040370 99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEI 178 (228)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 178 (228)
.+..+.. ...+..+.|-|..-+|++++..|.++.-|+.+|+.+..+.. .......+.-+|-+..+-.+.+ +|+|
T Consensus 202 ElHClk~---~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t--~~G~~~vm~qNP~NaVih~Ghs-nGtV 275 (545)
T KOG1272|consen 202 ELHCLKR---HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT--GAGRTDVMKQNPYNAVIHLGHS-NGTV 275 (545)
T ss_pred EEeehhh---cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc--cCCccchhhcCCccceEEEcCC-CceE
Confidence 8888877 45789999999999999999999999999999999888765 4445566677777776666555 7999
Q ss_pred EEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeecC
Q 040370 179 VIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL 228 (228)
Q Consensus 179 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~l 228 (228)
.+|.....+++..+ ..|.++|.+|++.++|+|++|+|.|..++|||+++
T Consensus 276 SlWSP~skePLvKi-LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 276 SLWSPNSKEPLVKI-LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN 324 (545)
T ss_pred EecCCCCcchHHHH-HhcCCCcceEEECCCCcEEeecccccceeEeeecc
Confidence 99999999988888 68999999999999999999999999999999974
No 179
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.85 E-value=2.3e-19 Score=124.03 Aligned_cols=205 Identities=11% Similarity=0.114 Sum_probs=159.0
Q ss_pred cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC-C
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV-S 96 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~-~ 96 (228)
-..+|+|.+|++|+..+|.+.++..|.||.....+..........| ...|+.++|+|..+.|++|+.|..-++|... .
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~H-d~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEH-DKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhh-CcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 4679999999999999999999999999999887755555555555 8899999999999999999999999999984 3
Q ss_pred CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee--EEEEecceeeeeeeEEEECCCCcEEEEeeCC
Q 040370 97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL--VKQYLGATHTQLRFQAVFNDTEEFVLSIDEP 174 (228)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
++-..++.........+++.|+|.++.+++|+..+.|.||-++..+- +.+.........+.++.|+|++-.+++++.
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~- 166 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST- 166 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc-
Confidence 43333332222267889999999999999999999999998865432 222223336678899999999887777554
Q ss_pred CCeEEEEEcC-----C-------------cceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 175 SNEIVIWDAL-----T-------------AEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 175 d~~i~i~d~~-----~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
|+..+++..- . |+...++ ....+.+..+.|+|+|..|+-.+.|..+.+=|
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~-~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA-SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh-ccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence 8999998531 1 1122222 24567899999999999999999999988765
No 180
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=1.3e-19 Score=128.50 Aligned_cols=192 Identities=13% Similarity=0.218 Sum_probs=149.5
Q ss_pred ceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe
Q 040370 10 KRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA 88 (228)
Q Consensus 10 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 88 (228)
.+...+.+|...|.-++|+| -.+.|++++.|..|.+||+.+++....+. |...|.++.|+.+|.+|+|.+.|..
T Consensus 122 epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-----hpd~i~S~sfn~dGs~l~TtckDKk 196 (472)
T KOG0303|consen 122 EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-----HPDMVYSMSFNRDGSLLCTTCKDKK 196 (472)
T ss_pred cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-----CCCeEEEEEeccCCceeeeecccce
Confidence 45677889999999999999 46788899999999999999999766654 3889999999999999999999999
Q ss_pred EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEee---CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCC
Q 040370 89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCG---KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE 165 (228)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (228)
|+|||.++++.+..-..|. +..-....|-.++..+-||- .+..+.+||..+.+....+..-.....+.-..+.++.
T Consensus 197 vRv~dpr~~~~v~e~~~he-G~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt 275 (472)
T KOG0303|consen 197 VRVIDPRRGTVVSEGVAHE-GAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDT 275 (472)
T ss_pred eEEEcCCCCcEeeeccccc-CCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCC
Confidence 9999999999998886665 44445555777888444442 5678999998876655444444456667778889999
Q ss_pred cEEEEeeCCCCeEEEEEcCCcceeEEeec--CCCCCcEEEEeCC
Q 040370 166 EFVLSIDEPSNEIVIWDALTAEKVAKWSS--NHIGAPRWIEHSP 207 (228)
Q Consensus 166 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~ 207 (228)
..+..+|..|+.|+-|.+.+..+...+.. ....+-..+.|-|
T Consensus 276 ~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mP 319 (472)
T KOG0303|consen 276 SIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMP 319 (472)
T ss_pred CEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccc
Confidence 99999999999999999987765443322 2233445555555
No 181
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=4.9e-18 Score=129.19 Aligned_cols=197 Identities=22% Similarity=0.452 Sum_probs=154.0
Q ss_pred cceEEEEE-eCCCC-EEEEecC-CCeEEEEEccc-ceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-CCeEEEEeC
Q 040370 20 HNVRSVSF-HPSGD-FLLAGTD-HPIAHLYDVNT-FQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK-DGAIRLWDG 94 (228)
Q Consensus 20 ~~v~~~~~-~~~~~-~l~~~~~-d~~i~vw~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~v~iwd~ 94 (228)
..+..+.+ ++++. .++..+. |+.+.+|+... .........+ ...|..++|+|++..+++++. |+.+++|++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (466)
T COG2319 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGH----SESVTSLAFSPDGKLLASGSSLDGTIKLWDL 185 (466)
T ss_pred CceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecC----cccEEEEEECCCCCEEEecCCCCCceEEEEc
Confidence 36777777 78777 5555444 99999999987 4444433332 678889999999998888886 999999999
Q ss_pred CCCceeeEEecccccceeEEEEECCCCC-EEEEeeCCCeEEEEEccCCeeEE-EEecceeeeeeeEEEECCCCcEEEEee
Q 040370 95 VSANCVRSIVGAHGTAEATSANFTKDQR-FVLSCGKDSTVKLWEVSSGRLVK-QYLGATHTQLRFQAVFNDTEEFVLSID 172 (228)
Q Consensus 95 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
..+.....+..+ ...+.+++|+|++. .+++++.|+.|++||...+.... .+..+ .... ...|++++.+++ ++
T Consensus 186 ~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~-~~ 259 (466)
T COG2319 186 RTGKPLSTLAGH--TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH--SDSV-VSSFSPDGSLLA-SG 259 (466)
T ss_pred CCCceEEeeccC--CCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCC--Ccce-eEeECCCCCEEE-Ee
Confidence 987777777764 78999999999988 55555999999999988777766 45553 3332 227889986666 45
Q ss_pred CCCCeEEEEEcCCcce-eEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 173 EPSNEIVIWDALTAEK-VAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 173 ~~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+.|+.+++|+.+.... .... ..|...+.++.|.|++..+++++.|+.+++|+..
T Consensus 260 ~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~ 314 (466)
T COG2319 260 SSDGTIRLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE 314 (466)
T ss_pred cCCCcEEEeeecCCCcEEEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcC
Confidence 5589999999987775 4444 6788999999999988888889999999999764
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.85 E-value=1.4e-19 Score=123.70 Aligned_cols=201 Identities=12% Similarity=0.197 Sum_probs=153.4
Q ss_pred ecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCC-CeEEEEecCCeEEEEeC
Q 040370 17 QDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG-GMYVTASKDGAIRLWDG 94 (228)
Q Consensus 17 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~iwd~ 94 (228)
.+..++++..|+. +-+++.+++-|-+..|||++++.. ...+.....|...|..++|...+ +.|++.+.||.|++||+
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~-~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS-GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL 226 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence 4678999999998 788999999999999999999732 11222234458999999999854 48999999999999999
Q ss_pred CCCceeeEEecccc-cceeEEEEECC-CCCEEEEeeCCC-eEEEEEccCCe-eEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370 95 VSANCVRSIVGAHG-TAEATSANFTK-DQRFVLSCGKDS-TVKLWEVSSGR-LVKQYLGATHTQLRFQAVFNDTEEFVLS 170 (228)
Q Consensus 95 ~~~~~~~~~~~~~~-~~~i~~~~~~~-~~~~l~~~~~d~-~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
+..+....+..... ..+...++|++ |-+++|+-..|. .|.+.|+|... ++..+++ |...+..++|.|.....++
T Consensus 227 R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~--H~a~VNgIaWaPhS~~hic 304 (364)
T KOG0290|consen 227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN--HQASVNGIAWAPHSSSHIC 304 (364)
T ss_pred cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhc--CcccccceEecCCCCceee
Confidence 98776655544332 56788899998 567788766654 69999999753 4566666 7888999999999998888
Q ss_pred eeCCCCeEEEEEcCCcce------eEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEE
Q 040370 171 IDEPSNEIVIWDALTAEK------VAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRF 223 (228)
Q Consensus 171 ~~~~d~~i~i~d~~~~~~------~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~v 223 (228)
++++|....+||+.+... +... ...+.|+.++|++ .+..++.+.. +.+.+
T Consensus 305 taGDD~qaliWDl~q~~~~~~~dPilay--~a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 305 TAGDDCQALIWDLQQMPRENGEDPILAY--TAGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred ecCCcceEEEEecccccccCCCCchhhh--hccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 888899999999975433 1122 3567899999997 5667776653 34433
No 183
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=6.4e-20 Score=135.25 Aligned_cols=211 Identities=13% Similarity=0.185 Sum_probs=152.6
Q ss_pred eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC--CCCeEEEEecCCeE
Q 040370 12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS--TGGMYVTASKDGAI 89 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v 89 (228)
..++.+|++-|+|++|+.+|.+|++|++|-.+.|||.-..+.+..+.. +| ...|.++.|-| ..+.+++|..|..|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T--gH-taNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST--GH-TANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeec--cc-ccceeEEeeeccCCCeEEEeccCcceE
Confidence 445679999999999999999999999999999999987666555443 44 88999999999 45689999999999
Q ss_pred EEEeCCCC----------ceeeEEecccccceeEEEEECCCC-CEEEEeeCCCeEEEEEccCCeeEEEEe--------cc
Q 040370 90 RLWDGVSA----------NCVRSIVGAHGTAEATSANFTKDQ-RFVLSCGKDSTVKLWEVSSGRLVKQYL--------GA 150 (228)
Q Consensus 90 ~iwd~~~~----------~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~--------~~ 150 (228)
+++|+... +....+..| ...|..++-.|++ ..+.++++||+|+-+|++.......-. ..
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~ch--t~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCH--TDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred EEEecccccccccccCccchhhhhhhh--hhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 99999742 233334444 6788889999987 789999999999999998743211100 00
Q ss_pred eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc------------------eeEEeecCCC-----------CCcE
Q 040370 151 THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE------------------KVAKWSSNHI-----------GAPR 201 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~------------------~~~~~~~~~~-----------~~v~ 201 (228)
..-....++..+|...+.++.|+.|.-.++||.+... ++..+..+|. ..++
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t 277 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCT 277 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeE
Confidence 1123346788899998888888889999999943211 1222222332 1145
Q ss_pred EEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 202 WIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 202 ~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
-+.|+|+|.-|+..=....|.++|+.
T Consensus 278 ~vtfnpNGtElLvs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 278 YVTFNPNGTELLVSWGGEHVYLFDVN 303 (758)
T ss_pred EEEECCCCcEEEEeeCCeEEEEEeec
Confidence 57899998766554444568888863
No 184
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.83 E-value=1.9e-19 Score=132.20 Aligned_cols=172 Identities=14% Similarity=0.241 Sum_probs=129.8
Q ss_pred CCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeEEEEeCCC-----------
Q 040370 29 PSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAIRLWDGVS----------- 96 (228)
Q Consensus 29 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~----------- 96 (228)
|.+--++.|-.-|.|.+.|....+..+.+.....-.+..++|+.|-|. ...++.+-.+|.+.++|.+.
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 456677888888999999877633222122111111578999999994 45677788899999997532
Q ss_pred ---Cc--------------eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEE
Q 040370 97 ---AN--------------CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQA 159 (228)
Q Consensus 97 ---~~--------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
+. ++..+. .....|..++|+|||++||+.++||.+||+|..+.+++..++. --....++
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~--~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS--YFGGLLCv 338 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWH--IGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS--YFGGLLCV 338 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeE--eccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh--hccceEEE
Confidence 11 111111 1245788999999999999999999999999998877665543 44567899
Q ss_pred EECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeC
Q 040370 160 VFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHS 206 (228)
Q Consensus 160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 206 (228)
+|+||++|++++|. |.-|.||.+...+.+..- .+|.+.|+.++|.
T Consensus 339 cWSPDGKyIvtGGE-DDLVtVwSf~erRVVARG-qGHkSWVs~VaFD 383 (636)
T KOG2394|consen 339 CWSPDGKYIVTGGE-DDLVTVWSFEERRVVARG-QGHKSWVSVVAFD 383 (636)
T ss_pred EEcCCccEEEecCC-cceEEEEEeccceEEEec-cccccceeeEeec
Confidence 99999999999766 799999999988888877 7999999999998
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.7e-18 Score=115.77 Aligned_cols=198 Identities=18% Similarity=0.285 Sum_probs=141.2
Q ss_pred ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEE------eeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC
Q 040370 21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCY------LSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG 94 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~ 94 (228)
.|.+-+++|.+++|++|..+|.|.+..+++-..- +....+...|.++|+.++|. ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 4666789999999999999999999998642110 01111213348999999998 44677766 599999976
Q ss_pred CCCce------eeEEec-----ccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECC
Q 040370 95 VSANC------VRSIVG-----AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFND 163 (228)
Q Consensus 95 ~~~~~------~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (228)
+.... +.+... ...-..|+++...|..+-++.++.|+.++-||+++|+..+.+++ |...+.++.-..
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG--HtDYvH~vv~R~ 166 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRG--HTDYVHSVVGRN 166 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcC--Ccceeeeeeecc
Confidence 54321 111111 11134689999999887788888999999999999999999998 778888888766
Q ss_pred CCcEEEEeeCCCCeEEEEEcCCcceeEEeec--------CCCC-CcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 164 TEEFVLSIDEPSNEIVIWDALTAEKVAKWSS--------NHIG-APRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 164 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--------~~~~-~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
....+++++ +||++|+||.++++.+..+.. .|.+ .|-+++- +..+|++|+ ...+.+|.++
T Consensus 167 ~~~qilsG~-EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLr 235 (325)
T KOG0649|consen 167 ANGQILSGA-EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLR 235 (325)
T ss_pred cCcceeecC-CCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEecc
Confidence 666777754 589999999999998877632 1222 2444444 556777665 4568899875
No 186
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=2.9e-17 Score=124.96 Aligned_cols=206 Identities=22% Similarity=0.456 Sum_probs=164.4
Q ss_pred EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce-EEeeeccceeeeccceeeEEe-CCCCC-eEEEEec-CCeE
Q 040370 14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ-CYLSANVPEISVNGAINQVRY-SSTGG-MYVTASK-DGAI 89 (228)
Q Consensus 14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~i~~~~~-~~~~~-~l~~~~~-dg~v 89 (228)
....|...+.++.+.+.+..++.++.|+.+.+|+...+. ....+.... ...+..+.+ ++++. .++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLH---DSSVSKLALSSPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccC---CCceeeEEEECCCcceEEeccCCCCccE
Confidence 345789999999999999999999999999999998876 333333211 135666666 77777 5555444 9999
Q ss_pred EEEeCCC-CceeeEEecccccceeEEEEECCCCCEEEEeeC-CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370 90 RLWDGVS-ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF 167 (228)
Q Consensus 90 ~iwd~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (228)
.+||... ......+..+ ...+..++|+|++..+++++. |+.+++|++..+..+..+.. +...+..+.++|++..
T Consensus 137 ~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGH--SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG--HTDPVSSLAFSPDGGL 212 (466)
T ss_pred EEEEecCCCeEEEEEecC--cccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc--CCCceEEEEEcCCcce
Confidence 9999987 6667777665 678889999999998888886 99999999998777777766 6778889999999886
Q ss_pred EEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 168 VLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 168 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
++++++.|+.+++||...+.........|.... -..|+|++.++++++.|+.+++|++.
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~ 271 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLR 271 (466)
T ss_pred EEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence 666556689999999887777763336777765 44899999899999999999999975
No 187
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=4.8e-19 Score=131.71 Aligned_cols=201 Identities=12% Similarity=0.238 Sum_probs=160.2
Q ss_pred EEEeecCcceEEEEEeCCCCEEEEecC---CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370 13 FRVIQDTHNVRSVSFHPSGDFLLAGTD---HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI 89 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 89 (228)
...+.|..+|+.+.|+..|+||++... ...|.|+++........+... .+.|.++.|+|...+|+.++. ..|
T Consensus 515 ~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ks----kG~vq~v~FHPs~p~lfVaTq-~~v 589 (733)
T KOG0650|consen 515 CIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKS----KGLVQRVKFHPSKPYLFVATQ-RSV 589 (733)
T ss_pred EEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhc----CCceeEEEecCCCceEEEEec-cce
Confidence 455689999999999999999998654 457889999887655444333 677999999999888888876 689
Q ss_pred EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe-eEEEEecceeeeeeeEEEECCCCcEE
Q 040370 90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR-LVKQYLGATHTQLRFQAVFNDTEEFV 168 (228)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (228)
+|||+..++.++++... ...|..++.+|.|..|+.|+.|+.+..+|+.-+. +.+++.. |...+..++|++.-..+
T Consensus 590 RiYdL~kqelvKkL~tg--~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~--H~~avr~Va~H~ryPLf 665 (733)
T KOG0650|consen 590 RIYDLSKQELVKKLLTG--SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL--HEKAVRSVAFHKRYPLF 665 (733)
T ss_pred EEEehhHHHHHHHHhcC--CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh--hhhhhhhhhhcccccee
Confidence 99999988888777664 6789999999999999999999999999997553 4444544 77888999999877766
Q ss_pred EEeeCCCCeEEEEEcC------Ccc---eeEEeecCCCCC----cEEEEeCCCCcEEEEecCCCCEEEe
Q 040370 169 LSIDEPSNEIVIWDAL------TAE---KVAKWSSNHIGA----PRWIEHSPAEAAFITCGTDRSVRFW 224 (228)
Q Consensus 169 ~~~~~~d~~i~i~d~~------~~~---~~~~~~~~~~~~----v~~~~~~~~~~~l~s~~~dg~i~vw 224 (228)
++ ++.||++.|+--. ... ++..+ .+|... |..+.|+|...+|+++|.||+|++|
T Consensus 666 as-~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L-~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 666 AS-GSDDGTVIVFHGMVYNDLLQNPLIVPLKRL-RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ee-ecCCCcEEEEeeeeehhhhcCCceEeeeec-cCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 65 5668999988422 221 12223 577654 8889999999999999999999998
No 188
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=8.1e-19 Score=121.74 Aligned_cols=204 Identities=16% Similarity=0.243 Sum_probs=154.3
Q ss_pred ecCcceEEEEEeC-----CCCEEEEecCCCeEEEEEcccceEEeeeccc-eeeeccceeeEEeCCC----CCeEEEEecC
Q 040370 17 QDTHNVRSVSFHP-----SGDFLLAGTDHPIAHLYDVNTFQCYLSANVP-EISVNGAINQVRYSST----GGMYVTASKD 86 (228)
Q Consensus 17 ~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~----~~~l~~~~~d 86 (228)
.|+.+|..++|++ +...+|+++. ..+.+|..........++.. ...+......++|+-+ ..+++.|+.-
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~ 114 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYL 114 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecce
Confidence 5778999999986 3345666665 46889987654322222211 1112566777777643 3478889999
Q ss_pred CeEEEEeCCCCceeeEEecccccceeEEEEECCC-CCEEEEeeCCCeEEEEEccCCeeEEEEecc-eeeeeeeEEEECCC
Q 040370 87 GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD-QRFVLSCGKDSTVKLWEVSSGRLVKQYLGA-THTQLRFQAVFNDT 164 (228)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 164 (228)
|.|+|.|+.+++....+.+| +..|+.+.++|+ .+++++++.|..|++|++++..++..+-+. .|...+.++.|+++
T Consensus 115 GvIrVid~~~~~~~~~~~gh--G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~ 192 (385)
T KOG1034|consen 115 GVIRVIDVVSGQCSKNYRGH--GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD 192 (385)
T ss_pred eEEEEEecchhhhccceecc--CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence 99999999999999999887 789999999995 578999999999999999999999888542 37788999999999
Q ss_pred CcEEEEeeCCCCeEEEEEcCCcceeEE---------------------------eecCCCCCcEEEEeCCCCcEEEEecC
Q 040370 165 EEFVLSIDEPSNEIVIWDALTAEKVAK---------------------------WSSNHIGAPRWIEHSPAEAAFITCGT 217 (228)
Q Consensus 165 ~~~~~~~~~~d~~i~i~d~~~~~~~~~---------------------------~~~~~~~~v~~~~~~~~~~~l~s~~~ 217 (228)
+.+++++|. |.++++|++...+.... ...-|...|-|+.|- |+++++=|-
T Consensus 193 gd~i~ScGm-Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksc 269 (385)
T KOG1034|consen 193 GDRIASCGM-DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSC 269 (385)
T ss_pred CCeeeccCC-cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeeccc
Confidence 999888766 89999999973321100 112466677777774 578999999
Q ss_pred CCCEEEeee
Q 040370 218 DRSVRFWKE 226 (228)
Q Consensus 218 dg~i~vwd~ 226 (228)
++.|..|..
T Consensus 270 enaI~~w~p 278 (385)
T KOG1034|consen 270 ENAIVCWKP 278 (385)
T ss_pred CceEEEEec
Confidence 999999975
No 189
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.82 E-value=2.4e-17 Score=125.54 Aligned_cols=197 Identities=14% Similarity=0.100 Sum_probs=133.6
Q ss_pred EeecCcceEEEEEeCCCCEEEEec---CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEE-ecCC--e
Q 040370 15 VIQDTHNVRSVSFHPSGDFLLAGT---DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTA-SKDG--A 88 (228)
Q Consensus 15 ~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg--~ 88 (228)
+..+...+.+.+|+|||+.|+..+ .+..|.+|++.+++....... .+.+....|+|+|+.|+.. +.+| .
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-----~~~~~~~~~SPDG~~La~~~~~~g~~~ 268 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-----PRHNGAPAFSPDGSKLAFALSKTGSLN 268 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-----CCCcCCeEECCCCCEEEEEEcCCCCcE
Confidence 345667899999999999998653 345799999988764433222 2335568999999988754 4455 5
Q ss_pred EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC-C--eEEEEEccCCeeEEEEecceeeeeeeEEEECCCC
Q 040370 89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-S--TVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE 165 (228)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (228)
|.+||+.+++..+.... ...+....|+||++.|+..+.+ + .|+++|+.+++.. .+.. .........|+|++
T Consensus 269 I~~~d~~tg~~~~lt~~---~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~--~~~~~~~~~~SpDG 342 (429)
T PRK03629 269 LYVMDLASGQIRQVTDG---RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW--EGSQNQDADVSSDG 342 (429)
T ss_pred EEEEECCCCCEEEccCC---CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec--CCCCccCEEECCCC
Confidence 88999988765443322 3456789999999988776654 3 4555577665433 3322 22234567899999
Q ss_pred cEEEEeeCCC--CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCC---EEEee
Q 040370 166 EFVLSIDEPS--NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRS---VRFWK 225 (228)
Q Consensus 166 ~~~~~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~---i~vwd 225 (228)
++++..+..+ ..|.+||+.+++... +... .......|+|||+.|+.++.++. +.+++
T Consensus 343 ~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 343 KFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeEE-eCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 9988766543 458889998776443 3122 22346789999999999888775 44444
No 190
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.82 E-value=8.9e-18 Score=114.00 Aligned_cols=157 Identities=18% Similarity=0.327 Sum_probs=113.8
Q ss_pred EEEEEeCCCCEEEEecC----------CCeEEEEEcccc-eEEeeeccceeeeccceeeEEeCCCCCeEEEE--ecCCeE
Q 040370 23 RSVSFHPSGDFLLAGTD----------HPIAHLYDVNTF-QCYLSANVPEISVNGAINQVRYSSTGGMYVTA--SKDGAI 89 (228)
Q Consensus 23 ~~~~~~~~~~~l~~~~~----------d~~i~vw~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~v 89 (228)
..+.|+|+|++|++-.. -+...+|.++.. ......... ..++|.+++|+|+|+.|++. ..++.|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~---~~~~I~~~~WsP~g~~favi~g~~~~~v 85 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK---KEGPIHDVAWSPNGNEFAVIYGSMPAKV 85 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc---CCCceEEEEECcCCCEEEEEEccCCccc
Confidence 45789999998875332 234556665332 222222221 14579999999999987654 456799
Q ss_pred EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC---CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCc
Q 040370 90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD---STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEE 166 (228)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (228)
.+||++ ++.+..+. ...+..+.|+|+|+++++++.+ |.+.+||+++.+.+..... .....+.|+|+|+
T Consensus 86 ~lyd~~-~~~i~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~----~~~t~~~WsPdGr 156 (194)
T PF08662_consen 86 TLYDVK-GKKIFSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH----SDATDVEWSPDGR 156 (194)
T ss_pred EEEcCc-ccEeEeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc----CcEEEEEEcCCCC
Confidence 999996 66565553 3466889999999999998754 6799999998888777642 2357899999999
Q ss_pred EEEEeeCC-----CCeEEEEEcCCcceeEEe
Q 040370 167 FVLSIDEP-----SNEIVIWDALTAEKVAKW 192 (228)
Q Consensus 167 ~~~~~~~~-----d~~i~i~d~~~~~~~~~~ 192 (228)
+++++... |+.++||+. +|+.+...
T Consensus 157 ~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 157 YLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred EEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 99998764 789999997 46666554
No 191
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.82 E-value=8.2e-19 Score=129.17 Aligned_cols=182 Identities=14% Similarity=0.163 Sum_probs=142.2
Q ss_pred eecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC
Q 040370 16 IQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV 95 (228)
Q Consensus 16 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~ 95 (228)
..|.+.+.+-.|+|+|.-|+++++||.|++|.-.. -........ ..+|.|++|.|+.+.++-|. .+.+.|=.+.
T Consensus 101 ~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-MLRStl~Q~----~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~ 174 (737)
T KOG1524|consen 101 SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-MLRSTVVQN----EESIRCARWAPNSNSIVFCQ-GGHISIKPLA 174 (737)
T ss_pred hhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-hHHHHHhhc----CceeEEEEECCCCCceEEec-CCeEEEeecc
Confidence 36899999999999999999999999999998543 221111111 67899999999877666554 4678887777
Q ss_pred CCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC
Q 040370 96 SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS 175 (228)
Q Consensus 96 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 175 (228)
....+...+.| .+-|.++.|++.++.+++|++|-..++||-. |+.+..-. .|..++++++|+|+..+ +. ++.
T Consensus 175 ~n~k~i~WkAH--DGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~--~~ey~ITSva~npd~~~-~v-~S~- 246 (737)
T KOG1524|consen 175 ANSKIIRWRAH--DGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSA--AEEYAITSVAFNPEKDY-LL-WSY- 246 (737)
T ss_pred cccceeEEecc--CcEEEEeecCccccceeecCCceeEEeeccc-CcccccCC--hhccceeeeeeccccce-ee-eee-
Confidence 77777778876 8899999999999999999999999999964 55555443 37888999999999433 33 332
Q ss_pred CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEE
Q 040370 176 NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRF 223 (228)
Q Consensus 176 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v 223 (228)
++.+ +.....+.|..++||+||..++.|...|.+.+
T Consensus 247 nt~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 247 NTAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeee------------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 4444 33456788999999999999999999887654
No 192
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.82 E-value=2.2e-20 Score=143.57 Aligned_cols=204 Identities=20% Similarity=0.369 Sum_probs=156.8
Q ss_pred eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370 12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL 91 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 91 (228)
..++.+|...|.|..|...|.++++|++|..++||..+++.+......+ .+.|+.++.+.+..++++++.|..|++
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGh----s~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGH----SGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCC----ccccchhccchhhhhhhhcccCceEEE
Confidence 3456689999999999999999999999999999999998887766643 889999999988889999999999999
Q ss_pred EeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee--------------EEEEecc-------
Q 040370 92 WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL--------------VKQYLGA------- 150 (228)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--------------~~~~~~~------- 150 (228)
|.+..+.++..+.+| .+.|++++|+|-. +.+.||++++||.+-.-. ...+...
T Consensus 259 Wrl~~~~pvsvLrgh--tgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~ 332 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGH--TGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL 332 (1113)
T ss_pred EecCCCchHHHHhcc--ccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccc
Confidence 999999999999887 7899999999965 778999999999871100 0000000
Q ss_pred ---------ee--------eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCcEE
Q 040370 151 ---------TH--------TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAF 212 (228)
Q Consensus 151 ---------~~--------~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 212 (228)
.+ .....-+..+.+...+..+.-.+-.+.+|++.+|...+.. .+|...+..+.++| +....
T Consensus 333 Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l-~ghsd~~yvLd~Hpfn~ri~ 411 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL-MGHSDEVYVLDVHPFNPRIA 411 (1113)
T ss_pred cccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh-cccccceeeeeecCCCcHhh
Confidence 00 0000011111111122222333567889999999888887 79999999999999 55667
Q ss_pred EEecCCCCEEEeee
Q 040370 213 ITCGTDRSVRFWKE 226 (228)
Q Consensus 213 ~s~~~dg~i~vwd~ 226 (228)
.+++.||...|||+
T Consensus 412 msag~dgst~iwdi 425 (1113)
T KOG0644|consen 412 MSAGYDGSTIIWDI 425 (1113)
T ss_pred hhccCCCceEeeec
Confidence 78999999999996
No 193
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=6.7e-17 Score=113.88 Aligned_cols=195 Identities=11% Similarity=0.104 Sum_probs=152.1
Q ss_pred ceEEEEEeCCCCEEEEecC--CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370 21 NVRSVSFHPSGDFLLAGTD--HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN 98 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 98 (228)
.|--+-|+ ..++|..+. -..+++++.+.+..+..... ...|.++.++. +.|+++-++. |+|||+++.+
T Consensus 48 ~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f-----pt~IL~VrmNr--~RLvV~Lee~-IyIydI~~Mk 117 (391)
T KOG2110|consen 48 SIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIFF-----PTSILAVRMNR--KRLVVCLEES-IYIYDIKDMK 117 (391)
T ss_pred EEEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEec-----CCceEEEEEcc--ceEEEEEccc-EEEEecccce
Confidence 34445554 334444333 34588888888776666554 56799999974 4577776654 9999999999
Q ss_pred eeeEEecc-cccceeEEEEECCCCCEEEEee--CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC
Q 040370 99 CVRSIVGA-HGTAEATSANFTKDQRFVLSCG--KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS 175 (228)
Q Consensus 99 ~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 175 (228)
.+.++..- .+...+.++.+++.+.+++.-+ ..|.|.+||+.+-+.+..+.. |...+.+++|+++|.++++++...
T Consensus 118 lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~a--H~~~lAalafs~~G~llATASeKG 195 (391)
T KOG2110|consen 118 LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINA--HKGPLAALAFSPDGTLLATASEKG 195 (391)
T ss_pred eehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEe--cCCceeEEEECCCCCEEEEeccCc
Confidence 99888664 3355577777777777888543 468899999999999888875 888999999999999999988765
Q ss_pred CeEEEEEcCCcceeEEeecCC-CCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 176 NEIVIWDALTAEKVAKWSSNH-IGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 176 ~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
-.|||+.+.+|+.+.++..+- ...|.+++|+|++++|++.|..++|.+|++.
T Consensus 196 TVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 196 TVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred eEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 578999999999999996553 3468899999999999999999999999874
No 194
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.81 E-value=1.2e-17 Score=113.28 Aligned_cols=149 Identities=17% Similarity=0.275 Sum_probs=108.5
Q ss_pred eeEEeCCCCCeEEEEec----------CCeEEEEeCCCC-ceeeEEecccccceeEEEEECCCCCEEEEe--eCCCeEEE
Q 040370 69 NQVRYSSTGGMYVTASK----------DGAIRLWDGVSA-NCVRSIVGAHGTAEATSANFTKDQRFVLSC--GKDSTVKL 135 (228)
Q Consensus 69 ~~~~~~~~~~~l~~~~~----------dg~v~iwd~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~d~~i~~ 135 (228)
..+.|+|+|++|+.-.. -|...+|.++.. .....+.... ..+|.+++|+|+++.+++. ..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~-~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKK-EGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccC-CCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 45779999987664332 134555655332 3344444332 4579999999999987544 46779999
Q ss_pred EEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC--CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEE
Q 040370 136 WEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP--SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFI 213 (228)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 213 (228)
||++ ++.+..+. ......+.|+|+|+++++++.. .|.+.+||.++.+.+... .|. .++.++|+|+|++|+
T Consensus 88 yd~~-~~~i~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~--~~~-~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 88 YDVK-GKKIFSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF--EHS-DATDVEWSPDGRYLA 159 (194)
T ss_pred EcCc-ccEeEeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc--ccC-cEEEEEEcCCCCEEE
Confidence 9996 66666663 3345678999999999998742 478999999988887765 333 478999999999999
Q ss_pred EecC------CCCEEEeee
Q 040370 214 TCGT------DRSVRFWKE 226 (228)
Q Consensus 214 s~~~------dg~i~vwd~ 226 (228)
++.. |+.++||+.
T Consensus 160 ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred EEEeccceeccccEEEEEe
Confidence 9874 788999985
No 195
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.81 E-value=1.4e-18 Score=130.47 Aligned_cols=213 Identities=11% Similarity=0.147 Sum_probs=158.1
Q ss_pred eeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEee--eccceeeeccceeeEEeCCCCCeEEEEecCC
Q 040370 11 RAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLS--ANVPEISVNGAINQVRYSSTGGMYVTASKDG 87 (228)
Q Consensus 11 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 87 (228)
.+-.+.+|.+.|+.+.|+| +..+||+|+.|..|+||.+..+..... .....++.+-.+.++.|+|...-|+..+..|
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g 150 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG 150 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence 3444558999999999999 677899999999999999985532211 1111223255789999999765566666779
Q ss_pred eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC-CeeEEEEecceeeeeeeEEEECCCCc
Q 040370 88 AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS-GRLVKQYLGATHTQLRFQAVFNDTEE 166 (228)
Q Consensus 88 ~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (228)
.++|||+.+++....+..| ...|.++.|+.||..|++++.|+.|+|||.+. ++.++..++|. ...-..+.|..+-.
T Consensus 151 ~v~i~D~stqk~~~el~~h--~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~-~~rdsRv~w~Gn~~ 227 (1012)
T KOG1445|consen 151 SVYITDISTQKTAVELSGH--TDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHG-GMRDSRVLWAGNWE 227 (1012)
T ss_pred eEEEEEcccCceeecccCC--chhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccc-cchhheeeeccchh
Confidence 9999999999999988887 78899999999999999999999999999986 45666666543 23445677877777
Q ss_pred EEEEeeCC---CCeEEEEEcCCcc-eeEEeecCCCCCcEEEEeCCCCcEEEEec-CCCCEEEeee
Q 040370 167 FVLSIDEP---SNEIVIWDALTAE-KVAKWSSNHIGAPRWIEHSPAEAAFITCG-TDRSVRFWKE 226 (228)
Q Consensus 167 ~~~~~~~~---d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~ 226 (228)
.++++|.. -..+++||.+... .+.++.......|.--.|.||.++|+.+| .+..+..+.+
T Consensus 228 rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~ 292 (1012)
T KOG1445|consen 228 RLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEM 292 (1012)
T ss_pred hhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEe
Confidence 88887763 3678999988743 44444334445566667899888776655 4666666553
No 196
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.1e-17 Score=118.53 Aligned_cols=203 Identities=15% Similarity=0.182 Sum_probs=152.5
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC-eEEEEecC--CeEEEEeCC
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG-MYVTASKD--GAIRLWDGV 95 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d--g~v~iwd~~ 95 (228)
..+|..++.. ...|++|-.+|.+.+|..+.+....... ........+..+.-+|... .+++|+.. ..+.+||++
T Consensus 105 ~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l-~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle 181 (412)
T KOG3881|consen 105 TKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKL-IKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLE 181 (412)
T ss_pred cccccchhhc--CCEEEEEecCCcEEEEeccCCccccccc-eeeecCCceeeeccCCCCCceEecCchhcccceeeeecc
Confidence 4455555543 3467778889999999998544211111 0111134566677777544 56669988 899999999
Q ss_pred CCceeeEEeccc-------ccceeEEEEECCC--CCEEEEeeCCCeEEEEEccCCe-eEEEEecceeeeeeeEEEECCCC
Q 040370 96 SANCVRSIVGAH-------GTAEATSANFTKD--QRFVLSCGKDSTVKLWEVSSGR-LVKQYLGATHTQLRFQAVFNDTE 165 (228)
Q Consensus 96 ~~~~~~~~~~~~-------~~~~i~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 165 (228)
+.+.+..-+... -+..++++.|-+. ...|++++.-+.+++||.+.++ ++..+.. ....++++...|.+
T Consensus 182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~--~E~~is~~~l~p~g 259 (412)
T KOG3881|consen 182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF--LENPISSTGLTPSG 259 (412)
T ss_pred cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc--ccCcceeeeecCCC
Confidence 875544332211 1446678899987 7899999999999999999765 3444543 56778889999999
Q ss_pred cEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 166 EFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 166 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.+++++.. -+.+..||.+.+........+-.+.++++..+|..++|+++|-|..|+|+|+.
T Consensus 260 n~Iy~gn~-~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 260 NFIYTGNT-KGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred cEEEEecc-cchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence 99999777 49999999999999988668899999999999999999999999999999963
No 197
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=5.1e-18 Score=133.76 Aligned_cols=207 Identities=12% Similarity=0.216 Sum_probs=147.6
Q ss_pred cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC--CCCeEEEEecCCeEEEEeCCC-
Q 040370 20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS--TGGMYVTASKDGAIRLWDGVS- 96 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~iwd~~~- 96 (228)
.+-..+.|+|-...++++...-.|+|||.+.++....+...... ...|+.+.+-. |..++++|+.||.|+||+--.
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~-~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFP-DTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCC-CCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 35677889998889999988889999999999887766654433 66899998865 456899999999999997322
Q ss_pred ----CceeeEEeccc-----ccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370 97 ----ANCVRSIVGAH-----GTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF 167 (228)
Q Consensus 97 ----~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (228)
.+.+.-+..-. ..+.-.-+.|.....+|++++.-..|+|||....+....+... ....++.+.-+.....
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~-s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG-SSTLVTALSADLVHGN 1222 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccC-CCccceeecccccCCc
Confidence 22222221110 0111144678877777777777899999999887777666543 3334444444433444
Q ss_pred EEEeeCCCCeEEEEEcCCcce--eEEeecCCCCC--cEEEEeCCCCcE-EEEecCCCCEEEeeecC
Q 040370 168 VLSIDEPSNEIVIWDALTAEK--VAKWSSNHIGA--PRWIEHSPAEAA-FITCGTDRSVRFWKEIL 228 (228)
Q Consensus 168 ~~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~-l~s~~~dg~i~vwd~~l 228 (228)
++++|..||.+++||.|.... .......|... |..+.+.+.|-. |++|+.||.|++||++|
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence 555566699999999987654 33333678776 999999986654 99999999999999986
No 198
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=5.3e-17 Score=124.07 Aligned_cols=199 Identities=15% Similarity=0.119 Sum_probs=133.2
Q ss_pred EEEeecCcceEEEEEeCCCCEEEEecC---CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCC-
Q 040370 13 FRVIQDTHNVRSVSFHPSGDFLLAGTD---HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDG- 87 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg- 87 (228)
..+..+...+.+.+|+|+++.|+..+. +..|.+||+.+++....... .+...+..|+|+|+.++ +.+.+|
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~-----~g~~~~~~~SpDG~~l~~~~s~~g~ 271 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF-----RGINGAPSFSPDGRRLALTLSRDGN 271 (433)
T ss_pred eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC-----CCCccCceECCCCCEEEEEEeCCCC
Confidence 345567778999999999999987763 34799999988765432221 33445789999998775 455555
Q ss_pred -eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-CCe--EEEEEccCCeeEEEEecceeeeeeeEEEECC
Q 040370 88 -AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-DST--VKLWEVSSGRLVKQYLGATHTQLRFQAVFND 163 (228)
Q Consensus 88 -~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (228)
.|.+||+.+++... +..+ .......+|+||+++|+..+. ++. |+++|+.+++... +.. .........|+|
T Consensus 272 ~~Iy~~d~~~g~~~~-lt~~--~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~--~g~~~~~~~~Sp 345 (433)
T PRK04922 272 PEIYVMDLGSRQLTR-LTNH--FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF--QGNYNARASVSP 345 (433)
T ss_pred ceEEEEECCCCCeEE-CccC--CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec--CCCCccCEEECC
Confidence 59999998876433 3332 334467899999998887663 444 7777776665332 221 122334678999
Q ss_pred CCcEEEEeeCCCC--eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCC-C--CEEEee
Q 040370 164 TEEFVLSIDEPSN--EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTD-R--SVRFWK 225 (228)
Q Consensus 164 ~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g--~i~vwd 225 (228)
++++++.+...++ .|.+||+.+++.. .+ .+........|+|+|++++..+.+ + .+.+++
T Consensus 346 DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~L--t~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~ 409 (433)
T PRK04922 346 DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TL--TPGSLDESPSFAPNGSMVLYATREGGRGVLAAVS 409 (433)
T ss_pred CCCEEEEEECCCCceeEEEEECCCCCeE-EC--CCCCCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 9999887654333 6999999877654 33 122234567899999987766653 3 344444
No 199
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=1e-16 Score=122.62 Aligned_cols=191 Identities=15% Similarity=0.086 Sum_probs=130.7
Q ss_pred EEEeecCcceEEEEEeCCCCEEEEecC---CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCCe
Q 040370 13 FRVIQDTHNVRSVSFHPSGDFLLAGTD---HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDGA 88 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~ 88 (228)
..+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++....... .+.+....|+|+|+.|+ +.+.++.
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~-----~g~~~~~~~SPDG~~la~~~~~~g~ 269 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF-----PGMTFAPRFSPDGRKVVMSLSQGGN 269 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC-----CCcccCcEECCCCCEEEEEEecCCC
Confidence 445567889999999999999887653 46899999988765332211 45667889999998765 5555555
Q ss_pred --EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-CC--eEEEEEccCCeeEEEEecceeeeeeeEEEECC
Q 040370 89 --IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-DS--TVKLWEVSSGRLVKQYLGATHTQLRFQAVFND 163 (228)
Q Consensus 89 --v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (228)
|.+||+.+++..+ +..+ ........|+||++.++..+. ++ .|+++|+..++.. .+.. .........|+|
T Consensus 270 ~~Iy~~d~~~~~~~~-Lt~~--~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~--~~~~~~~~~~Sp 343 (435)
T PRK05137 270 TDIYTMDLRSGTTTR-LTDS--PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISF--GGGRYSTPVWSP 343 (435)
T ss_pred ceEEEEECCCCceEE-ccCC--CCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eeec--CCCcccCeEECC
Confidence 7777988776533 3332 345567899999998887663 33 6888898765443 3322 123345578999
Q ss_pred CCcEEEEeeCCC--CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecC
Q 040370 164 TEEFVLSIDEPS--NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGT 217 (228)
Q Consensus 164 ~~~~~~~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 217 (228)
+++.++...... ..|.+||+..+.. ..+.. ...+....|+|||+.|+..+.
T Consensus 344 dG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~--~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 344 RGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS--GFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCce-EeccC--CCCCCCCeECCCCCEEEEEEc
Confidence 999998765433 4688888755443 33322 234677899999998876554
No 200
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.4e-17 Score=113.62 Aligned_cols=159 Identities=22% Similarity=0.325 Sum_probs=116.6
Q ss_pred ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC----ceeeEEecccccceeEEEEECC--CCCEEEEeeCCCeEEEEEc
Q 040370 65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA----NCVRSIVGAHGTAEATSANFTK--DQRFVLSCGKDSTVKLWEV 138 (228)
Q Consensus 65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~wd~ 138 (228)
..-|+++.|.+.|+.+++|+.|++|+|||.+.. .+......| .+.|..+.|.+ -|+.+++++.|+++.||.-
T Consensus 13 ~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah--~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 13 KDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAH--DGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred cceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEec--CCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 677999999999999999999999999997543 344555555 77899999876 6899999999999999975
Q ss_pred cC-------CeeEEEEecceeeeeeeEEEECCCC-cEEEEeeCCCCeEEEEEcCCcc-----------------------
Q 040370 139 SS-------GRLVKQYLGATHTQLRFQAVFNDTE-EFVLSIDEPSNEIVIWDALTAE----------------------- 187 (228)
Q Consensus 139 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~----------------------- 187 (228)
.. .+.+..-........++.+.|.|.. ...+++.+.||.+|||+....-
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~ 170 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQ 170 (361)
T ss_pred cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccC
Confidence 21 1112222222356678888888864 3444555668999999752210
Q ss_pred --------------------------------------------eeEEeecCCCCCcEEEEeCCC----CcEEEEecCCC
Q 040370 188 --------------------------------------------KVAKWSSNHIGAPRWIEHSPA----EAAFITCGTDR 219 (228)
Q Consensus 188 --------------------------------------------~~~~~~~~~~~~v~~~~~~~~----~~~l~s~~~dg 219 (228)
.+.++ .+|..+|+.++|.|+ ..+||+++.||
T Consensus 171 ~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L-~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 171 PCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL-PDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred cceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc-CCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 01111 368889999999994 35899999999
Q ss_pred CEEEeeec
Q 040370 220 SVRFWKEI 227 (228)
Q Consensus 220 ~i~vwd~~ 227 (228)
|+||++.
T Consensus 250 -v~I~~v~ 256 (361)
T KOG2445|consen 250 -VRIFKVK 256 (361)
T ss_pred -EEEEEEe
Confidence 9999874
No 201
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.80 E-value=2.4e-17 Score=131.63 Aligned_cols=219 Identities=13% Similarity=0.212 Sum_probs=162.1
Q ss_pred ccceeEEEeecCcceEEEEEeCC-CCEEEEecCCCeEEEEEcccceEE---eeeccceeeeccceeeEEeCCCCCeEEEE
Q 040370 8 TAKRAFRVIQDTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQCY---LSANVPEISVNGAINQVRYSSTGGMYVTA 83 (228)
Q Consensus 8 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 83 (228)
.+..+.++..|...+..++.++. +.+|++|+.||+|++|++..-... ............++.++.+.+.++.+|.+
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 35566777789999999999874 599999999999999998753211 00011001126789999999999999999
Q ss_pred ecCCeEEEEeCCCC--c-----eeeEEecccccceeEEEEECC-CCC-EEEEeeCCCeEEEEEccCCeeEEEEecceeee
Q 040370 84 SKDGAIRLWDGVSA--N-----CVRSIVGAHGTAEATSANFTK-DQR-FVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQ 154 (228)
Q Consensus 84 ~~dg~v~iwd~~~~--~-----~~~~~~~~~~~~~i~~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 154 (228)
+.||.|++.+++.. + ..+....+..+..+..-+|.. .+. .++.+..-+.|..||++......+++.....+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 99999999998762 1 222222222233333444444 333 67888888999999999888777777666778
Q ss_pred eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCC---CcEEEEec--CCCCEEEeeec
Q 040370 155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPA---EAAFITCG--TDRSVRFWKEI 227 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~--~dg~i~vwd~~ 227 (228)
.+++++.+|.+.+++.+.+ .|.+.+||+|-+.++..+..++..++..+..+|- ....++++ ..+.|.+|++.
T Consensus 1197 ~vTSi~idp~~~WlviGts-~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTS-RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred ceeEEEecCCceEEEEecC-CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence 8999999999998888666 5999999999999999987778889999888873 24555544 46789999863
No 202
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.5e-18 Score=128.07 Aligned_cols=212 Identities=18% Similarity=0.240 Sum_probs=153.3
Q ss_pred eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccc-----eEEeeeccceeeeccceeeEEeCCCCCeEEEEec
Q 040370 11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTF-----QCYLSANVPEISVNGAINQVRYSSTGGMYVTASK 85 (228)
Q Consensus 11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 85 (228)
..+.+..|...|+.++|+|....|++++.||.+.+|+++.. ..+........| .++|.|+++.+++..+++|+.
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH-~gPVl~v~v~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAH-EGPVLCVVVPSNGEHCYSGGI 364 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecc-cCceEEEEecCCceEEEeecc
Confidence 34567789999999999999999999999999999999431 122222233344 999999999999999999999
Q ss_pred CCeEEEEeCCCC----------ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeee
Q 040370 86 DGAIRLWDGVSA----------NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQL 155 (228)
Q Consensus 86 dg~v~iwd~~~~----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 155 (228)
||+|+.|++... .....+.+| ...++.+++++....|++++.||+++.|+.....+ .++........
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Gh--tdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGH--TDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceecc--ccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 999999965421 122344554 77899999999989999999999999999876555 45544444455
Q ss_pred eeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecC------CCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 156 RFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN------HIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
...+.+-.....+..++..-+.-.++++..+..+..+... -...+..+.++|...+.+++..|+.|+++|.
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn 518 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDN 518 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccc
Confidence 5566655554333333332344445555555544444211 1235778889999999999999999999985
No 203
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.2e-17 Score=131.71 Aligned_cols=225 Identities=12% Similarity=0.123 Sum_probs=152.8
Q ss_pred CCcCCccccceeEEEe-ecCcceEEEEEeC--CCCEEEEecCCCeEEEEEccc-----ceEEeeeccceeee---cccee
Q 040370 1 FFDFSKATAKRAFRVI-QDTHNVRSVSFHP--SGDFLLAGTDHPIAHLYDVNT-----FQCYLSANVPEISV---NGAIN 69 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~-----~~~~~~~~~~~~~~---~~~i~ 69 (228)
|||+.+...-.-+... .....|+.+.+-. |..++++|+.||.|+||+--. .+.+.......... .+.=.
T Consensus 1090 vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~ 1169 (1387)
T KOG1517|consen 1090 VWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGL 1169 (1387)
T ss_pred EEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCe
Confidence 4777755543333222 1346789998865 567899999999999997422 22222221111110 11113
Q ss_pred eEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCe---eEE
Q 040370 70 QVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGR---LVK 145 (228)
Q Consensus 70 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~---~~~ 145 (228)
-+.|.....+|++++.-..|+|||.........+.... ...++++.-+. .|+.+++|..||.|++||.|... .+.
T Consensus 1170 v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s-~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGS-STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred eeehhhhCCeEEecCCeeEEEEEecccceeEeecccCC-CccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence 46787766677777778999999999888887776653 55677766544 56899999999999999998643 345
Q ss_pred EEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe-ecCC---CCCcEEEEeCCCCcEEEEecCCCCE
Q 040370 146 QYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW-SSNH---IGAPRWIEHSPAEAAFITCGTDRSV 221 (228)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-~~~~---~~~v~~~~~~~~~~~l~s~~~dg~i 221 (228)
..+.+.....+..+.+.+.|---+++++.||.|++||+|.......+ ...| .+..+++..+++...+|+|+. +.|
T Consensus 1249 ~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~i 1327 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLI 1327 (1387)
T ss_pred eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceE
Confidence 55554444448888888877654555666899999999985222111 1222 235999999999999999998 999
Q ss_pred EEeeec
Q 040370 222 RFWKEI 227 (228)
Q Consensus 222 ~vwd~~ 227 (228)
+||++.
T Consensus 1328 kIy~~~ 1333 (1387)
T KOG1517|consen 1328 KIYSLS 1333 (1387)
T ss_pred EEEecC
Confidence 999963
No 204
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=4.1e-17 Score=114.86 Aligned_cols=194 Identities=13% Similarity=0.189 Sum_probs=135.5
Q ss_pred cCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEee---------eccceeeeccceeeEEeCCCCCeEEEEec-C
Q 040370 18 DTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLS---------ANVPEISVNGAINQVRYSSTGGMYVTASK-D 86 (228)
Q Consensus 18 ~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d 86 (228)
....|+|++|-| .+..|++|+..| |.+|....-..... .+.....-..+|+++.|++||..+++++. |
T Consensus 139 sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gs 217 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGS 217 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCc
Confidence 356899999999 556788888765 78998653211110 11111111468999999999999998885 6
Q ss_pred CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCc
Q 040370 87 GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEE 166 (228)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (228)
..|.|||+.++..+...... .+.+.-+.|+||+.+|+++.-|+..++|............. ....+...+|+|+|.
T Consensus 218 ssi~iWdpdtg~~~pL~~~g--lgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l--gsgrvqtacWspcGs 293 (445)
T KOG2139|consen 218 SSIMIWDPDTGQKIPLIPKG--LGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL--GSGRVQTACWSPCGS 293 (445)
T ss_pred ceEEEEcCCCCCcccccccC--CCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec--cCCceeeeeecCCCC
Confidence 78999999998776655332 66788999999999999999999999996554333222222 344788999999999
Q ss_pred EEEEeeCCCCeEEEEEcCCccee---------------EEee--------cCCCCCcEEEEeCCCCcEEEEecCC
Q 040370 167 FVLSIDEPSNEIVIWDALTAEKV---------------AKWS--------SNHIGAPRWIEHSPAEAAFITCGTD 218 (228)
Q Consensus 167 ~~~~~~~~d~~i~i~d~~~~~~~---------------~~~~--------~~~~~~v~~~~~~~~~~~l~s~~~d 218 (228)
+++.+.+ +.-++|.+...+.. ..+. .--.+++.+++|.|.|.+|++.-..
T Consensus 294 fLLf~~s--gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 294 FLLFACS--GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred EEEEEEc--CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 9988877 55666654321110 0000 0125678899999999999986543
No 205
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.78 E-value=4e-17 Score=124.91 Aligned_cols=221 Identities=10% Similarity=0.109 Sum_probs=156.7
Q ss_pred CCcCCccccc----eeEEEeecCcceEEEEEeCCC--CEEEEecCCCeEEEEEcccceEEeeec--------cceeeecc
Q 040370 1 FFDFSKATAK----RAFRVIQDTHNVRSVSFHPSG--DFLLAGTDHPIAHLYDVNTFQCYLSAN--------VPEISVNG 66 (228)
Q Consensus 1 iwd~~~~~~~----~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~vw~~~~~~~~~~~~--------~~~~~~~~ 66 (228)
+||+.....+ .......|..++..+.|..+. .-|++++.||.|..|+++.-....... ........
T Consensus 269 lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~ 348 (555)
T KOG1587|consen 269 LWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAV 348 (555)
T ss_pred EEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccccccccccccc
Confidence 5787765542 223334689999999997743 459999999999999876533211100 00111144
Q ss_pred ceeeEEeCC-CCCeEEEEecCCeEEEEeCC---CCc-----eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEE
Q 040370 67 AINQVRYSS-TGGMYVTASKDGAIRLWDGV---SAN-----CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWE 137 (228)
Q Consensus 67 ~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~---~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd 137 (228)
.+++++|.+ +-+.|+.|+++|.|.-=+-. ... ....... +.++|.++.++|-...++..+.|.++++|.
T Consensus 349 ~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~--h~g~v~~v~~nPF~~k~fls~gDW~vriWs 426 (555)
T KOG1587|consen 349 GATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFIT--HIGPVYAVSRNPFYPKNFLSVGDWTVRIWS 426 (555)
T ss_pred ceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccc--cCcceEeeecCCCccceeeeeccceeEecc
Confidence 688999988 55689999999999873322 221 1112222 378999999999665544444499999999
Q ss_pred cc-CCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc--eeEEeecCCCCCcEEEEeCCCCcEEEE
Q 040370 138 VS-SGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE--KVAKWSSNHIGAPRWIEHSPAEAAFIT 214 (228)
Q Consensus 138 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s 214 (228)
.. ...++..+.. +...++.++|+|...-++++...||.+.+||+.... +..+. ..+....+.+.|+++|+.|+.
T Consensus 427 ~~~~~~Pl~~~~~--~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~-~~~~~~l~~~~~s~~g~~lav 503 (555)
T KOG1587|consen 427 EDVIASPLLSLDS--SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQ-KVCSPALTRVRWSPNGKLLAV 503 (555)
T ss_pred ccCCCCcchhhhh--ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccc-cccccccceeecCCCCcEEEE
Confidence 87 5555555544 566699999999999999999989999999997544 33333 234566777888889999999
Q ss_pred ecCCCCEEEeee
Q 040370 215 CGTDRSVRFWKE 226 (228)
Q Consensus 215 ~~~dg~i~vwd~ 226 (228)
|...|.+.+|++
T Consensus 504 Gd~~G~~~~~~l 515 (555)
T KOG1587|consen 504 GDANGTTHILKL 515 (555)
T ss_pred ecCCCcEEEEEc
Confidence 999999999997
No 206
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=4.7e-18 Score=125.26 Aligned_cols=196 Identities=20% Similarity=0.329 Sum_probs=148.0
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccce-eeEEeCC-------CCCeEEEEecCCe
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAI-NQVRYSS-------TGGMYVTASKDGA 88 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~-------~~~~l~~~~~dg~ 88 (228)
.|...+.|+.|+.+...+.+++++..+.-|++.+... .....+. ..+ +.+-.-| ....|+.++.||.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~~~p~----df~pt~~h~~~rs~~~g~~~d~~~i~s~DGk 86 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVAKLPD----DFVPTDMHLGGRSSGGGKGSDTLLICSNDGR 86 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhhhCCc----ccCCccccccccccCCCCCcceEEEEcCCce
Confidence 5777888999998777777776665555555544332 2222221 111 1111111 2347889999999
Q ss_pred EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEE
Q 040370 89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFV 168 (228)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (228)
+.+.+ +.++..+.+..| .+.+.+-.|+|+|.-|+++++||.|++|. ++|....++.. ....+.+++|.|+...+
T Consensus 87 f~il~-k~~rVE~sv~AH--~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q--~~~~v~c~~W~p~S~~v 160 (737)
T KOG1524|consen 87 FVILN-KSARVERSISAH--AAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQ--NEESIRCARWAPNSNSI 160 (737)
T ss_pred EEEec-ccchhhhhhhhh--hhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhh--cCceeEEEEECCCCCce
Confidence 99988 567766777666 77899999999999999999999999998 45555444432 56788999999999988
Q ss_pred EEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 169 LSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 169 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
+.+.+ +.+.|=.+.....+..+ ..|.+-|.++.|+|..+++++||+|-..++||-
T Consensus 161 l~c~g--~h~~IKpL~~n~k~i~W-kAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~ 215 (737)
T KOG1524|consen 161 VFCQG--GHISIKPLAANSKIIRW-RAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA 215 (737)
T ss_pred EEecC--CeEEEeecccccceeEE-eccCcEEEEeecCccccceeecCCceeEEeecc
Confidence 88766 78888888877788888 799999999999999999999999999999995
No 207
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=2e-16 Score=120.62 Aligned_cols=193 Identities=14% Similarity=0.186 Sum_probs=127.3
Q ss_pred EEEeecCcceEEEEEeCCCCEEEEecC---CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCCe
Q 040370 13 FRVIQDTHNVRSVSFHPSGDFLLAGTD---HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDGA 88 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~ 88 (228)
..+..+...+.+.+|+|||+.|+..+. ...|.+||+.+++....... .+.+....|+|+|+.|+ +.+.+|.
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~-----~g~~~~~~~SPDG~~la~~~~~~g~ 263 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF-----KGSNSAPAWSPDGRTLAVALSRDGN 263 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC-----CCCccceEECCCCCEEEEEEccCCC
Confidence 344467788999999999999987653 34699999998865432211 34456889999998776 5677887
Q ss_pred EEEEe--CCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-CCeEEEEEc--cCCeeEEEEecceeeeeeeEEEECC
Q 040370 89 IRLWD--GVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-DSTVKLWEV--SSGRLVKQYLGATHTQLRFQAVFND 163 (228)
Q Consensus 89 v~iwd--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (228)
..+|. +..+. ...+..+ ........|+|||+.|+..+. ++...+|.+ .+++. ..+.. .........|+|
T Consensus 264 ~~Iy~~d~~~~~-~~~lt~~--~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~--~g~~~~~~~~Sp 337 (427)
T PRK02889 264 SQIYTVNADGSG-LRRLTQS--SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTF--TGSYNTSPRISP 337 (427)
T ss_pred ceEEEEECCCCC-cEECCCC--CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEec--CCCCcCceEECC
Confidence 66665 44443 3344332 334566789999998876554 455556654 44433 22221 122234578999
Q ss_pred CCcEEEEeeCCCC--eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCC
Q 040370 164 TEEFVLSIDEPSN--EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDR 219 (228)
Q Consensus 164 ~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 219 (228)
++++++.++..++ .|.+||+.+++..... .. .......|+|+++.|+.++.++
T Consensus 338 DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~~--~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 338 DGKLLAYISRVGGAFKLYVQDLATGQVTALT-DT--TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CCCEEEEEEccCCcEEEEEEECCCCCeEEcc-CC--CCccCceECCCCCEEEEEEecC
Confidence 9999887665333 6999999887654322 22 2346789999999888777544
No 208
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=9.8e-17 Score=124.03 Aligned_cols=164 Identities=13% Similarity=0.207 Sum_probs=117.9
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEccc-ceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNT-FQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV 95 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~ 95 (228)
.|...++|.++||+++++|+|..||.|.+|.--. ..........+.| ...|.++.|+++|.+|++|+..|.+.+|.+.
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH-~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH-HDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec-ccccceeEEecCCceEeecccceEEEEEeec
Confidence 5777899999999999999999999999997543 2222333444455 6889999999999999999999999999999
Q ss_pred CCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce---------eeeeeeEEEECCCCc
Q 040370 96 SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT---------HTQLRFQAVFNDTEE 166 (228)
Q Consensus 96 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 166 (228)
+++ .+-++.- .++|..+.++||+.+.+....|..|.+....+......+.+.. .......+.++|..+
T Consensus 282 T~~-kqfLPRL--gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 282 TGK-KQFLPRL--GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred CCC-ccccccc--CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 988 3333333 7899999999999999999999999998875544333332211 122334455555333
Q ss_pred EEEEeeCCCCeEEEEEcCC
Q 040370 167 FVLSIDEPSNEIVIWDALT 185 (228)
Q Consensus 167 ~~~~~~~~d~~i~i~d~~~ 185 (228)
.++..+. .|.|.+||+-+
T Consensus 359 ~~vln~~-~g~vQ~ydl~t 376 (792)
T KOG1963|consen 359 SLVLNGH-PGHVQFYDLYT 376 (792)
T ss_pred ceeecCC-CceEEEEeccc
Confidence 3333333 36666666533
No 209
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.77 E-value=1.9e-16 Score=119.99 Aligned_cols=197 Identities=12% Similarity=0.234 Sum_probs=142.8
Q ss_pred ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC---
Q 040370 21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA--- 97 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~--- 97 (228)
.|..++|-|||..|+.+..+ .+.+||...|.....++. | +..|.|++|+.+|+.+++|+.|..|.+|+..-.
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKg---H-KDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKG---H-KDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL 88 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCccccccccc---c-cceEEEEEEccCCceeccCCCceeEEEeccccccee
Confidence 79999999999998877654 688999999987766653 3 889999999999999999999999999985421
Q ss_pred -----ceeeEEe---------------------------cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEE
Q 040370 98 -----NCVRSIV---------------------------GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVK 145 (228)
Q Consensus 98 -----~~~~~~~---------------------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~ 145 (228)
..++.+. .+.....+.+++|..||++++.|-.+|+|.+-+- +++...
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~ 167 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKV 167 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcce
Confidence 1222211 1112467888999999999999999999998764 444444
Q ss_pred EEec-ceeeeeeeEEEECCCCc----EEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCC
Q 040370 146 QYLG-ATHTQLRFQAVFNDTEE----FVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRS 220 (228)
Q Consensus 146 ~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 220 (228)
.+.. .....++..++|+|... -+++......++.+|.+ +|+.+..- ..-.-...|+.+.|+|.+++.||.|+.
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~-r~L~FdP~CisYf~NGEy~LiGGsdk~ 245 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKD-RALNFDPCCISYFTNGEYILLGGSDKQ 245 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeeccc-ccCCCCchhheeccCCcEEEEccCCCc
Confidence 4432 33567889999998653 12222233455555554 34443322 233445678999999999999999999
Q ss_pred EEEee
Q 040370 221 VRFWK 225 (228)
Q Consensus 221 i~vwd 225 (228)
+++|-
T Consensus 246 L~~fT 250 (1081)
T KOG1538|consen 246 LSLFT 250 (1081)
T ss_pred eEEEe
Confidence 98874
No 210
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=9.4e-18 Score=119.82 Aligned_cols=155 Identities=17% Similarity=0.270 Sum_probs=118.1
Q ss_pred eeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe
Q 040370 69 NQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL 148 (228)
Q Consensus 69 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 148 (228)
.+++|+++|..+++++.||++|+|+..+...+.....+ ..+|.++.|+||++.|++.+.| ..+||+.+++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~--~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAH--HAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhh--cCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 67999999999999999999999997777766666665 6799999999999999999999 89999999997766665
Q ss_pred cceeeeeeeEEEECCCC---c-EEEEeeCCCCeEEEEEcCCcce-----eEEeecCCCCCcEEEEeCCCCcEEEEecCCC
Q 040370 149 GATHTQLRFQAVFNDTE---E-FVLSIDEPSNEIVIWDALTAEK-----VAKWSSNHIGAPRWIEHSPAEAAFITCGTDR 219 (228)
Q Consensus 149 ~~~~~~~~~~~~~~~~~---~-~~~~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 219 (228)
..........+.|..++ . ++++.-..-+.|+.||+..... ..+. ......|++++.+++|++++.|+.||
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~-~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKK-IKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhh-hhccCcceeEEEcCCCcEEEEeccCC
Confidence 33344445556666554 2 4444444456777776543222 1111 12345799999999999999999999
Q ss_pred CEEEeeec
Q 040370 220 SVRFWKEI 227 (228)
Q Consensus 220 ~i~vwd~~ 227 (228)
.|.|++..
T Consensus 304 sVai~~~~ 311 (398)
T KOG0771|consen 304 SVAIYDAK 311 (398)
T ss_pred cEEEEEec
Confidence 99999853
No 211
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.77 E-value=3e-17 Score=120.91 Aligned_cols=139 Identities=22% Similarity=0.392 Sum_probs=108.7
Q ss_pred CcceEEEEEeC-CCCEEEEecCCCeEEEEEcccc--------------eEEeee---------ccc--eeeeccceeeEE
Q 040370 19 THNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTF--------------QCYLSA---------NVP--EISVNGAINQVR 72 (228)
Q Consensus 19 ~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~--------------~~~~~~---------~~~--~~~~~~~i~~~~ 72 (228)
...|+|+.|-| +...++++-.+|.+.+||.+.. ...... ... ... .+.|+..+
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~-~g~in~f~ 297 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIG-EGSINEFA 297 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEec-ccccccee
Confidence 47899999999 5556777788999999976321 000000 000 011 45789999
Q ss_pred eCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEeccee
Q 040370 73 YSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATH 152 (228)
Q Consensus 73 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 152 (228)
|+|||++||+.+.||.++|+|..+.+++-.++.. -+...|++|+|||+|+++|++|--|.||.+...+.+..-++ |
T Consensus 298 FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY--FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqG--H 373 (636)
T KOG2394|consen 298 FSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY--FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQG--H 373 (636)
T ss_pred EcCCCceEEEEecCceEEEeeccHHHHHHHHHhh--ccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccc--c
Confidence 9999999999999999999999988877666554 45789999999999999999999999999998888876655 7
Q ss_pred eeeeeEEEEC
Q 040370 153 TQLRFQAVFN 162 (228)
Q Consensus 153 ~~~~~~~~~~ 162 (228)
..++..++|.
T Consensus 374 kSWVs~VaFD 383 (636)
T KOG2394|consen 374 KSWVSVVAFD 383 (636)
T ss_pred ccceeeEeec
Confidence 8888888887
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2e-16 Score=111.49 Aligned_cols=188 Identities=11% Similarity=0.234 Sum_probs=137.6
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeEEEEeCCCC
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAIRLWDGVSA 97 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~ 97 (228)
+..+..++|++.-..+|++..|-.|++|+-.. ++...++... ...|+|++|-|. +..|+.|+. +-|.+|.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~s---QrnvtclawRPlsaselavgCr-~gIciW~~s~t 172 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVS---QRNVTCLAWRPLSASELAVGCR-AGICIWSDSRT 172 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchh---hcceeEEEeccCCcceeeeeec-ceeEEEEcCcc
Confidence 45688899999888899999999999999776 3333333222 678999999995 456666665 55999975421
Q ss_pred ----ce--------eeEEecccccceeEEEEECCCCCEEEEeeC-CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCC
Q 040370 98 ----NC--------VRSIVGAHGTAEATSANFTKDQRFVLSCGK-DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT 164 (228)
Q Consensus 98 ----~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (228)
.. .+.++. .+..+|++++|++||..+++++. |..|.+||..++..+..... ....+..+.|+|+
T Consensus 173 ln~~r~~~~~s~~~~qvl~~-pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~--glgg~slLkwSPd 249 (445)
T KOG2139|consen 173 LNANRNIRMMSTHHLQVLQD-PGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK--GLGGFSLLKWSPD 249 (445)
T ss_pred cccccccccccccchhheeC-CCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc--CCCceeeEEEcCC
Confidence 11 112222 23578999999999999999885 56799999999876655422 4556778999999
Q ss_pred CcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEec
Q 040370 165 EEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCG 216 (228)
Q Consensus 165 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 216 (228)
+.+++++.. |+..++|..........+. -..+.|....|+|+|++|+-+.
T Consensus 250 gd~lfaAt~-davfrlw~e~q~wt~erw~-lgsgrvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 250 GDVLFAATC-DAVFRLWQENQSWTKERWI-LGSGRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred CCEEEEecc-cceeeeehhcccceeccee-ccCCceeeeeecCCCCEEEEEE
Confidence 999999777 7999999765554444442 3345899999999998765443
No 213
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.75 E-value=9.5e-17 Score=111.23 Aligned_cols=160 Identities=9% Similarity=0.122 Sum_probs=132.2
Q ss_pred ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc---eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEc-cC
Q 040370 65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN---CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV-SS 140 (228)
Q Consensus 65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~-~~ 140 (228)
..+|+|.+|++++..++.+-....|.||.....+ ...++..| ...+++++|+|..+.|++++.|..-++|.. ..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~H--d~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEH--DKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhh--CcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 5789999999999999999999999999987665 45556655 789999999999999999999999999998 55
Q ss_pred CeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCccee---EEeecCCCCCcEEEEeCCCCcEEEEecC
Q 040370 141 GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKV---AKWSSNHIGAPRWIEHSPAEAAFITCGT 217 (228)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 217 (228)
++...++....+.....++.|+|.++.++++++ -..|.||-++..+.- ..+...+.+.|++++|+|++-+|++|+.
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSg-ar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~ 166 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSG-ARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST 166 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccC-ccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence 555555544457788899999999999888776 488888877654432 1223467888999999999999999999
Q ss_pred CCCEEEeeec
Q 040370 218 DRSVRFWKEI 227 (228)
Q Consensus 218 dg~i~vwd~~ 227 (228)
|+..++|...
T Consensus 167 D~k~rVfSay 176 (361)
T KOG1523|consen 167 DGKCRVFSAY 176 (361)
T ss_pred CcceeEEEEe
Confidence 9999999754
No 214
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=1.7e-14 Score=100.16 Aligned_cols=205 Identities=11% Similarity=0.147 Sum_probs=141.7
Q ss_pred ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEccc-ceEEeeeccceeeeccceeeEEeCCCCCeEEE-EecCC
Q 040370 10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNT-FQCYLSANVPEISVNGAINQVRYSSTGGMYVT-ASKDG 87 (228)
Q Consensus 10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg 87 (228)
.++........+|.++.+.+ +.|++.- .+.|.||...+ .+....+..... ...+.+++-+.+..+|+. |-.-|
T Consensus 85 ~~~i~el~f~~~I~~V~l~r--~riVvvl-~~~I~VytF~~n~k~l~~~et~~N--PkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 85 ERCIIELSFNSEIKAVKLRR--DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSN--PKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred CcEEEEEEeccceeeEEEcC--CeEEEEe-cCeEEEEEcCCChhheeeeecccC--CCceEeecCCCCceEEEcCCCccc
Confidence 34444456788999999965 4566665 46899999874 343333332211 122333333323334443 34569
Q ss_pred eEEEEeCCCCce--eeEEecccccceeEEEEECCCCCEEEEeeCCCe-EEEEEccCCeeEEEEecceeeeeeeEEEECCC
Q 040370 88 AIRLWDGVSANC--VRSIVGAHGTAEATSANFTKDQRFVLSCGKDST-VKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT 164 (228)
Q Consensus 88 ~v~iwd~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (228)
.|.|-|+...+. ...+..| ...|.|++.+.+|..+||++..|+ ||+||..+++.+..+........+++++|+|+
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH--~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAH--DSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcc--cCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence 999999987655 4566665 889999999999999999999997 89999999999999988778888999999999
Q ss_pred CcEEEEeeCCCCeEEEEEcCCcceeEE-----------ee------------cCCCCCcEEEEeCCCCcEEEEecCCCCE
Q 040370 165 EEFVLSIDEPSNEIVIWDALTAEKVAK-----------WS------------SNHIGAPRWIEHSPAEAAFITCGTDRSV 221 (228)
Q Consensus 165 ~~~~~~~~~~d~~i~i~d~~~~~~~~~-----------~~------------~~~~~~v~~~~~~~~~~~l~s~~~dg~i 221 (228)
..++++++. .|+++|+.++....... ++ .-..++..-++|-.+.+.++..+.||.-
T Consensus 238 ~s~LavsSd-KgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy 316 (346)
T KOG2111|consen 238 SSWLAVSSD-KGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSY 316 (346)
T ss_pred ccEEEEEcC-CCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcE
Confidence 999999766 59999998865331111 00 1123345556676665666666677764
Q ss_pred E
Q 040370 222 R 222 (228)
Q Consensus 222 ~ 222 (228)
.
T Consensus 317 ~ 317 (346)
T KOG2111|consen 317 Y 317 (346)
T ss_pred E
Confidence 3
No 215
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=8.3e-15 Score=112.26 Aligned_cols=192 Identities=15% Similarity=0.148 Sum_probs=127.5
Q ss_pred EEEeecCcceEEEEEeCCCCEEEEecCC---CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCC-
Q 040370 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDH---PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDG- 87 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg- 87 (228)
..+..+...+...+|+|+|+.|+..+.+ ..|.+|++.+++....... .+.+....|+|+|+.|+ +.+.+|
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~-----~g~~~~~~~SpDG~~la~~~~~~g~ 266 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF-----EGLNGAPAWSPDGSKLAFVLSKDGN 266 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC-----CCCcCCeEECCCCCEEEEEEccCCC
Confidence 3445677789999999999999865533 4689999988765432221 33455789999999776 444555
Q ss_pred -eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-CC--eEEEEEccCCeeEEEEecceeeeeeeEEEECC
Q 040370 88 -AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-DS--TVKLWEVSSGRLVKQYLGATHTQLRFQAVFND 163 (228)
Q Consensus 88 -~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (228)
.|.++|+.+++... +..+ ........|+||++.++..+. ++ .|+++|+.+++...... .........|+|
T Consensus 267 ~~Iy~~d~~~~~~~~-lt~~--~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~---~~~~~~~~~~Sp 340 (430)
T PRK00178 267 PEIYVMDLASRQLSR-VTNH--PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF---VGNYNARPRLSA 340 (430)
T ss_pred ceEEEEECCCCCeEE-cccC--CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec---CCCCccceEECC
Confidence 58888998776443 3332 334566789999998776553 33 57888887766433221 112234567999
Q ss_pred CCcEEEEeeCCCC--eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCC
Q 040370 164 TEEFVLSIDEPSN--EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTD 218 (228)
Q Consensus 164 ~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 218 (228)
+++.++.....++ .|.++|+.+++..... .. .......|+|+|+.++..+.+
T Consensus 341 dg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt-~~--~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 341 DGKTLVMVHRQDGNFHVAAQDLQRGSVRILT-DT--SLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred CCCEEEEEEccCCceEEEEEECCCCCEEEcc-CC--CCCCCceECCCCCEEEEEEec
Confidence 9999988765444 5888998887653322 22 122346899999988766643
No 216
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.4e-17 Score=121.94 Aligned_cols=166 Identities=19% Similarity=0.240 Sum_probs=128.5
Q ss_pred ceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC--CCCEEEEeeCCCeEEEEE
Q 040370 60 PEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK--DQRFVLSCGKDSTVKLWE 137 (228)
Q Consensus 60 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~wd 137 (228)
..+| .+.|+|++|+.+|.+|++|+.|-.+.|||.-..+++..+...| ...|.++.|-| +.+.+++|..|..|+++|
T Consensus 46 L~GH-~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgH-taNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 46 LTGH-TGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGH-TANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hccc-cceecceeecCCCCEEeecCCcceEEeecchhcceeeeeeccc-ccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 3445 9999999999999999999999999999999888888887765 88999999999 567899999999999999
Q ss_pred ccCCee--------EEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe-------e--cCCCCCc
Q 040370 138 VSSGRL--------VKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW-------S--SNHIGAP 200 (228)
Q Consensus 138 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-------~--~~~~~~v 200 (228)
+...+. .....-..|...+..++..|++...+-++++||+|+-+|++.......- . ....-..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 975221 1111112255566677888999888888888999999999874322111 0 1122356
Q ss_pred EEEEeCC-CCcEEEEecCCCCEEEeeec
Q 040370 201 RWIEHSP-AEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 201 ~~~~~~~-~~~~l~s~~~dg~i~vwd~~ 227 (228)
.++..+| +..+|+.|+.|-..++||.+
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhh
Confidence 7889999 45689999999999999953
No 217
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.73 E-value=3.2e-15 Score=111.28 Aligned_cols=191 Identities=14% Similarity=0.199 Sum_probs=154.5
Q ss_pred CCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeC------C--------------CCCeEEEEecCCe
Q 040370 29 PSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYS------S--------------TGGMYVTASKDGA 88 (228)
Q Consensus 29 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~--------------~~~~l~~~~~dg~ 88 (228)
|...++|....||.+++|+...++....+.... +..+..++..|. | +...++-|...|.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~-~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA-SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccch-hccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 456789999999999999999988766554432 224555555552 1 2236778888999
Q ss_pred EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEE
Q 040370 89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFV 168 (228)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (228)
|.++++..++....+....+.+.|.++.++.+-..|.+++.|..+..|+....+.++.+.. ....+..++.+|++..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~--~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE--QKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc--CCCccceEEEcCCCCEE
Confidence 9999999999999998767799999999999999999999999999999999888888876 56667889999998887
Q ss_pred EEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCC-----CcEEEEe-cCCCCEEEeee
Q 040370 169 LSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPA-----EAAFITC-GTDRSVRFWKE 226 (228)
Q Consensus 169 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~s~-~~dg~i~vwd~ 226 (228)
+++ + ++|.+||+++++.+..+ .+|.++|+++.|..+ |.+++++ ..+..+.+|-+
T Consensus 160 ~~a-s--~~ik~~~~~~kevv~~f-tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 160 LTA-S--RQIKVLDIETKEVVITF-TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred Eec-c--ceEEEEEccCceEEEEe-cCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 764 3 89999999999999999 899999999999776 5665554 45566777754
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=2.4e-14 Score=99.43 Aligned_cols=177 Identities=12% Similarity=0.094 Sum_probs=129.6
Q ss_pred CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC-CCceeeEEecccccceeEEEEECC
Q 040370 41 PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV-SANCVRSIVGAHGTAEATSANFTK 119 (228)
Q Consensus 41 ~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~i~~~~~~~ 119 (228)
+.|.|||-....++..+.. ..+|.++.+.++ .+++.- .+.|.||... +.+.+..+....++....+++-+.
T Consensus 75 NkviIWDD~k~~~i~el~f-----~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~ 146 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSF-----NSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS 146 (346)
T ss_pred ceEEEEecccCcEEEEEEe-----ccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCC
Confidence 3577777444444443332 678899999765 355443 5789999987 556666666544344455554444
Q ss_pred CCCEEEEe-eCCCeEEEEEccCCee--EEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCC
Q 040370 120 DQRFVLSC-GKDSTVKLWEVSSGRL--VKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNH 196 (228)
Q Consensus 120 ~~~~l~~~-~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 196 (228)
+..+|+.- -.-|.|.+-|+...+. ...+.. |...+.+++.+.+|..+++++...--|||||..+|+.+.++..+-
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A--H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~ 224 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINA--HDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV 224 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCcCCceEEEc--ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC
Confidence 44555543 3568999999986554 244444 888899999999999999988764568999999999999986553
Q ss_pred -CCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 197 -IGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 197 -~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
...|.+++|||+..+|+.+|.-|++.||.+.
T Consensus 225 d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 225 DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred chheEEEEEeCCCccEEEEEcCCCeEEEEEee
Confidence 4579999999999999999999999999874
No 219
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.73 E-value=6.7e-15 Score=112.48 Aligned_cols=193 Identities=14% Similarity=0.150 Sum_probs=129.1
Q ss_pred EEEeecCcceEEEEEeCCCCEEEEecCC---CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCC-
Q 040370 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDH---PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDG- 87 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg- 87 (228)
..+..+...+...+|+|+|++|+.+..+ ..|++||+.+++....... .+.+.+++|+|+++.|+ +.+.++
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~spDg~~l~~~~~~~~~ 257 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF-----PGMNGAPAFSPDGSKLAVSLSKDGN 257 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-----CCCccceEECCCCCEEEEEECCCCC
Confidence 3444566778999999999999876543 4799999988764332221 44566789999998776 444444
Q ss_pred -eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC-C--eEEEEEccCCeeEEEEecceeeeeeeEEEECC
Q 040370 88 -AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-S--TVKLWEVSSGRLVKQYLGATHTQLRFQAVFND 163 (228)
Q Consensus 88 -~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (228)
.|.+||+.++.... +..+ ........|+|+++.|+..+.. + .|+++|+.+++.. .+.. .........|+|
T Consensus 258 ~~i~~~d~~~~~~~~-l~~~--~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~--~~~~~~~~~~sp 331 (417)
T TIGR02800 258 PDIYVMDLDGKQLTR-LTNG--PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTF--RGGYNASPSWSP 331 (417)
T ss_pred ccEEEEECCCCCEEE-CCCC--CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eeec--CCCCccCeEECC
Confidence 58889988765433 3222 2334567899999988766543 3 5888888766543 3322 233456778999
Q ss_pred CCcEEEEeeCCC--CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCC
Q 040370 164 TEEFVLSIDEPS--NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDR 219 (228)
Q Consensus 164 ~~~~~~~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 219 (228)
++.+++.+.... ..|.+||+.++...... .. .......|+|+++.|+..+.++
T Consensus 332 dg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~--~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 332 DGDLIAFVHREGGGFNIAVMDLDGGGERVLT--DT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CCCEEEEEEccCCceEEEEEeCCCCCeEEcc--CC-CCCCCceECCCCCEEEEEEeCC
Confidence 999988876632 27888998875543222 11 2334568999999888777654
No 220
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.1e-16 Score=111.91 Aligned_cols=162 Identities=12% Similarity=0.155 Sum_probs=131.3
Q ss_pred ccceeeEEeCCCCCeEEEEecCCeEEEEeCCC------CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEc
Q 040370 65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVS------ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV 138 (228)
Q Consensus 65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~ 138 (228)
.+.|+++.|+.++++|++|+.|..+++|+++. .+++. +..++|...|.|++|...+..+++|..+++|..-|+
T Consensus 56 ~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~-~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDi 134 (609)
T KOG4227|consen 56 TGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG-VMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDI 134 (609)
T ss_pred ccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce-eccCccccceEEEEEccCCeeEecCCCcceeEeeec
Confidence 88999999999999999999999999999763 23343 445566889999999999999999999999999999
Q ss_pred cCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeE-E-eecCCCCCcEEEEeCCC-CcEEEEe
Q 040370 139 SSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVA-K-WSSNHIGAPRWIEHSPA-EAAFITC 215 (228)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~-~-~~~~~~~~v~~~~~~~~-~~~l~s~ 215 (228)
++.+.+..+........++.+..+|....++++.. ++.|.+||.+...... . .+.........+.|+|. ..+|++.
T Consensus 135 Et~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~-~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~ 213 (609)
T KOG4227|consen 135 ETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTR-AKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVN 213 (609)
T ss_pred ccceeeeeecccCcccceeecccCCCCceEEEEec-CceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEec
Confidence 99998888875555668888999998666666544 7999999998765222 1 12344556788999994 5678888
Q ss_pred cCCCCEEEeeecC
Q 040370 216 GTDRSVRFWKEIL 228 (228)
Q Consensus 216 ~~dg~i~vwd~~l 228 (228)
+..+-+.+||++|
T Consensus 214 ~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 214 SETGGPNVFDRRM 226 (609)
T ss_pred cccCCCCceeecc
Confidence 9999999999875
No 221
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.72 E-value=4.6e-14 Score=104.99 Aligned_cols=188 Identities=12% Similarity=0.103 Sum_probs=128.4
Q ss_pred CEE-EEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccc
Q 040370 32 DFL-LAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTA 110 (228)
Q Consensus 32 ~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 110 (228)
+++ ++-..++.|.+.|..+.+.+..+... ...-..+.|+|||+++++++.||.|.++|+.+++.+.++.. ..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~----~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~---G~ 78 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTG----GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV---GG 78 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-S----TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----SS
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCC----CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec---CC
Confidence 344 45567899999999998877766542 12224477999999999999999999999999999999887 44
Q ss_pred eeEEEEECCCCCEEEEee-CCCeEEEEEccCCeeEEEEeccee-----eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcC
Q 040370 111 EATSANFTKDQRFVLSCG-KDSTVKLWEVSSGRLVKQYLGATH-----TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL 184 (228)
Q Consensus 111 ~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~ 184 (228)
...++++++||++++++. .++.+.++|.++.+.+..+..... ...+..+..+|....+++.-.+-+.|.+-|..
T Consensus 79 ~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~ 158 (369)
T PF02239_consen 79 NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS 158 (369)
T ss_dssp EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence 668899999999988775 688999999999999888764322 22445666777777555555545899888987
Q ss_pred CcceeEEeecCCCCCcEEEEeCCCCcEEEEe-cCCCCEEEeee
Q 040370 185 TAEKVAKWSSNHIGAPRWIEHSPAEAAFITC-GTDRSVRFWKE 226 (228)
Q Consensus 185 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~ 226 (228)
..+.+...............|+|++++++.+ ..++.|-++|.
T Consensus 159 d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~ 201 (369)
T PF02239_consen 159 DPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDT 201 (369)
T ss_dssp TSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEET
T ss_pred cccccceeeecccccccccccCcccceeeecccccceeEEEee
Confidence 7655443223345567789999999987664 45566777764
No 222
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.3e-15 Score=116.31 Aligned_cols=172 Identities=13% Similarity=0.070 Sum_probs=115.2
Q ss_pred CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC---CeEEEEeCCCCceeeEEecccccceeEEEE
Q 040370 40 HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD---GAIRLWDGVSANCVRSIVGAHGTAEATSAN 116 (228)
Q Consensus 40 d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~ 116 (228)
+..|.+||.+.... ..+. .+ ...+....|+|+|+.|+..+.+ ..|++||+.+++....... .......+
T Consensus 183 ~~~i~i~d~dg~~~-~~lt---~~-~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~---~g~~~~~~ 254 (429)
T PRK01742 183 PYEVRVADYDGFNQ-FIVN---RS-SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF---RGHNGAPA 254 (429)
T ss_pred eEEEEEECCCCCCc-eEec---cC-CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC---CCccCcee
Confidence 46899999876542 2221 12 5678999999999999887654 4699999988764332211 22334689
Q ss_pred ECCCCCEEEEee-CCCeEEE--EEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee
Q 040370 117 FTKDQRFVLSCG-KDSTVKL--WEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS 193 (228)
Q Consensus 117 ~~~~~~~l~~~~-~d~~i~~--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 193 (228)
|+|||+.|+.++ .+|.+.+ ||+.+++. ..+.. +........|+|+++.++.++..++...+|++..........
T Consensus 255 wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~--~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 255 FSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTS--GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred ECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeecc--CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 999999888764 6776555 56655543 33433 344567889999999888777667888888775432222221
Q ss_pred cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 194 SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 194 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
.+.. ....|+|+|++|+..+.++ +.+||+
T Consensus 332 -~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl 360 (429)
T PRK01742 332 -GGRG--YSAQISADGKTLVMINGDN-VVKQDL 360 (429)
T ss_pred -cCCC--CCccCCCCCCEEEEEcCCC-EEEEEC
Confidence 3333 4578999999998888765 455775
No 223
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.71 E-value=1.5e-17 Score=120.40 Aligned_cols=193 Identities=16% Similarity=0.206 Sum_probs=157.3
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS 96 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 96 (228)
.-...|.++.|-.+.+++|++- ...+.|||-. |..+..+.. ...|..+.|-|..-+|++++..|.++.-|+.+
T Consensus 168 ~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~-GtElHClk~-----~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~ 240 (545)
T KOG1272|consen 168 NVMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNN-GTELHCLKR-----HIRVARLEFLPYHFLLVAASEAGFLKYQDVST 240 (545)
T ss_pred ehhhhhhhhhhhcchHHHHhhh-hceEEEecCC-CcEEeehhh-----cCchhhhcccchhheeeecccCCceEEEeech
Confidence 3456788888888888888775 4678999965 443343332 56789999999988999999999999999999
Q ss_pred CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370 97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN 176 (228)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 176 (228)
|+.+..+... .+.+..+.-+|-+..+-+|...|+|.+|.....+++..+.. |...+.++++.++|.|++++|- |.
T Consensus 241 GklVa~~~t~--~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLc--H~g~V~siAv~~~G~YMaTtG~-Dr 315 (545)
T KOG1272|consen 241 GKLVASIRTG--AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILC--HRGPVSSIAVDRGGRYMATTGL-DR 315 (545)
T ss_pred hhhhHHHHcc--CCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHh--cCCCcceEEECCCCcEEeeccc-cc
Confidence 9999888776 66788889999888999999999999999988888777765 7889999999999999999887 79
Q ss_pred eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 177 EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 177 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
.++|||+++...+.+... ..+...+++|..| +++.|....|.+|.
T Consensus 316 ~~kIWDlR~~~ql~t~~t--p~~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 316 KVKIWDLRNFYQLHTYRT--PHPASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred ceeEeeeccccccceeec--CCCcccccccccc--ceeeecCCeeeeeh
Confidence 999999999988877743 4467778888665 34444555788885
No 224
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.71 E-value=1.5e-13 Score=102.26 Aligned_cols=164 Identities=16% Similarity=0.201 Sum_probs=113.8
Q ss_pred eEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe-cCCeEEEEeCCCCcee
Q 040370 22 VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS-KDGAIRLWDGVSANCV 100 (228)
Q Consensus 22 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~ 100 (228)
-..+.|+||++++++++.||.|.++|+.+.+.+..... ......++++++|++++++. .++.+.++|.++.+.+
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-----G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v 113 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-----GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV 113 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-----CCCcceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence 34578999999999999999999999999998877765 44568899999999888765 6899999999999999
Q ss_pred eEEeccc-----ccceeEEEEECCCCCEEEEeeC-CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC
Q 040370 101 RSIVGAH-----GTAEATSANFTKDQRFVLSCGK-DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP 174 (228)
Q Consensus 101 ~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
+.+.... ....+.++..+|....++..-. .+.|.+.|....+.+..-. ...........++|+++|++++...
T Consensus 114 ~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~-i~~g~~~~D~~~dpdgry~~va~~~ 192 (369)
T PF02239_consen 114 KTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT-IKVGRFPHDGGFDPDGRYFLVAANG 192 (369)
T ss_dssp EEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE-EE--TTEEEEEE-TTSSEEEEEEGG
T ss_pred eecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee-ecccccccccccCcccceeeecccc
Confidence 8886542 1346778888888775555544 5889888987654433211 1134455678999999998887666
Q ss_pred CCeEEEEEcCCcceeEE
Q 040370 175 SNEIVIWDALTAEKVAK 191 (228)
Q Consensus 175 d~~i~i~d~~~~~~~~~ 191 (228)
.+.|-++|.++++....
T Consensus 193 sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 193 SNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp GTEEEEEETTTTEEEEE
T ss_pred cceeEEEeeccceEEEE
Confidence 78899999887765543
No 225
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.71 E-value=1.6e-15 Score=119.47 Aligned_cols=193 Identities=15% Similarity=0.215 Sum_probs=147.9
Q ss_pred EEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEe
Q 040370 25 VSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIV 104 (228)
Q Consensus 25 ~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 104 (228)
..+.-+...++.++.++.+.+||...+.............-....-+.++++.-++++|+.-+.|.+|+....+....+.
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~ 172 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLK 172 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceec
Confidence 33444667888888889999999988776555543322111222334456677799999999999999987444444466
Q ss_pred cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEE-EEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEc
Q 040370 105 GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVK-QYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDA 183 (228)
Q Consensus 105 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~ 183 (228)
+| .+.+.++.++.||.++++.+.|.++++|++++.+... ...+ |...+..+++.|. .+++.+. |.+.++|+.
T Consensus 173 GH--eG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg--HsaRvw~~~~~~n--~i~t~ge-dctcrvW~~ 245 (967)
T KOG0974|consen 173 GH--EGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFG--HSARVWACCFLPN--RIITVGE-DCTCRVWGV 245 (967)
T ss_pred cc--CCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccc--ccceeEEEEeccc--eeEEecc-ceEEEEEec
Confidence 65 7899999999999999999999999999999987765 3333 8888999999998 6666554 899999975
Q ss_pred CCcceeEEeecCCC-CCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 184 LTAEKVAKWSSNHI-GAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 184 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
++..+..+ .+|. ..+..++..+....++|++.|+.+++|++
T Consensus 246 -~~~~l~~y-~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 246 -NGTQLEVY-DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred -ccceehhh-hhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 44455555 4554 57999999999999999999999999986
No 226
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=3.4e-15 Score=111.16 Aligned_cols=209 Identities=11% Similarity=0.187 Sum_probs=150.9
Q ss_pred EEeecCcceEEEEEeCCCCEE-EEecCCCeEEEEEcccceEEeeecc-------------------------------ce
Q 040370 14 RVIQDTHNVRSVSFHPSGDFL-LAGTDHPIAHLYDVNTFQCYLSANV-------------------------------PE 61 (228)
Q Consensus 14 ~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~-------------------------------~~ 61 (228)
+-+.++..-+.|..+|||+|+ |+|.....|++||+.+......... ..
T Consensus 46 Qdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 46 QDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG 125 (703)
T ss_pred HhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC
Confidence 335688889999999999986 5678899999999876432211000 00
Q ss_pred eeeccc----eeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEE
Q 040370 62 ISVNGA----INQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWE 137 (228)
Q Consensus 62 ~~~~~~----i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd 137 (228)
.|+.-. -..++++.-..-|+.++....|+-++++.|+.+..+... ...++++..++...+|++|+.+|.|..||
T Consensus 126 ~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~--~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 126 RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETD--SGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccc--cccceeeeecCccceEEecccCceEEEec
Confidence 111111 133444432223455555567888899999998888775 57899999999999999999999999999
Q ss_pred ccCCeeEEEEecce---------eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCC
Q 040370 138 VSSGRLVKQYLGAT---------HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPA 208 (228)
Q Consensus 138 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 208 (228)
.+....+..+.... ....++++.|+.+|-.+.++.+ +|.+.|||+++.+++..-..+..-+|..+.|.+.
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts-~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS-TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc-CCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence 99877666654322 2234788999998888777666 6999999999999988765566678999999875
Q ss_pred --CcEEEEecCCCCEEEeee
Q 040370 209 --EAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 209 --~~~l~s~~~dg~i~vwd~ 226 (228)
+..++|. ....++|||.
T Consensus 283 ~~q~~v~S~-Dk~~~kiWd~ 301 (703)
T KOG2321|consen 283 DQQNKVVSM-DKRILKIWDE 301 (703)
T ss_pred CCCceEEec-chHHhhhccc
Confidence 4456554 4567899984
No 227
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.5e-15 Score=112.97 Aligned_cols=193 Identities=18% Similarity=0.272 Sum_probs=149.0
Q ss_pred eEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCcee
Q 040370 22 VRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCV 100 (228)
Q Consensus 22 v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 100 (228)
-..++++. ...+++.| ....|+-++++.|..+..+... .+.++++..++...+|++|+.+|.|..||.+.....
T Consensus 136 GRDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~----~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv 210 (703)
T KOG2321|consen 136 GRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETD----SGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRV 210 (703)
T ss_pred CccccccCCCccEEEee-cCcceEEEEccccccccccccc----cccceeeeecCccceEEecccCceEEEecchhhhhh
Confidence 34556654 34444444 4457888899999887776654 578999999999899999999999999999988776
Q ss_pred eEEeccc---------ccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCC--CcEEE
Q 040370 101 RSIVGAH---------GTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT--EEFVL 169 (228)
Q Consensus 101 ~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 169 (228)
..+.... ....|+++.|+.+|-.+++|..+|.+.+||+++.+++..- .|....++..+.|.+. +..++
T Consensus 211 ~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~~l~~~~~~~q~~v~ 289 (703)
T KOG2321|consen 211 GTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIKKLDWQDTDQQNKVV 289 (703)
T ss_pred eeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-ccCCccceeeecccccCCCceEE
Confidence 6665432 1235999999999999999999999999999998776543 4446677778888765 34444
Q ss_pred EeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370 170 SIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224 (228)
Q Consensus 170 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 224 (228)
+.. ...++|||-.+|+....+ .....++.+++-|++.+++++-.++.+..|
T Consensus 290 S~D--k~~~kiWd~~~Gk~~asi--Ept~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 290 SMD--KRILKIWDECTGKPMASI--EPTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred ecc--hHHhhhcccccCCceeec--cccCCcCceeeecCCceEEEecCCCcceeE
Confidence 433 489999999999998887 345569999999999999999887766544
No 228
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=5.2e-14 Score=107.87 Aligned_cols=189 Identities=16% Similarity=0.146 Sum_probs=121.4
Q ss_pred EeecCcceEEEEEeCCCCEEEEecC-C--CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEE-EecCCe--
Q 040370 15 VIQDTHNVRSVSFHPSGDFLLAGTD-H--PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVT-ASKDGA-- 88 (228)
Q Consensus 15 ~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~-- 88 (228)
+..+...+.+..|+|||+.|+..+. + ..|.++|+.+++....... .+......|+|+|+.|+. .+.+|.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-----~g~~~~~~wSPDG~~La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-----PGINGAPRFSPDGKKLALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-----CCCcCCeeECCCCCEEEEEEeCCCCeE
Confidence 3345667889999999999886543 2 3688889988765332221 223456899999997764 556664
Q ss_pred EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-CC--eEEEEEccCCeeEEEEecceeeeeeeEEEECCCC
Q 040370 89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-DS--TVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE 165 (228)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (228)
|.++|+.+++... +..+ ........|+||++.++..+. ++ .|+++|+.+++... +.. .........|+|++
T Consensus 288 Iy~~dl~tg~~~~-lt~~--~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~--~g~~~~~~~~SpDG 361 (448)
T PRK04792 288 IYVVDIATKALTR-ITRH--RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTF--EGEQNLGGSITPDG 361 (448)
T ss_pred EEEEECCCCCeEE-CccC--CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Eec--CCCCCcCeeECCCC
Confidence 7778888776433 3322 334567889999998876553 33 57777887765433 221 11223456899999
Q ss_pred cEEEEeeCCCC--eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecC
Q 040370 166 EFVLSIDEPSN--EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGT 217 (228)
Q Consensus 166 ~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 217 (228)
++++.++..++ .|.++|+.+++..... ... ......|+|+|+.|+..+.
T Consensus 362 ~~l~~~~~~~g~~~I~~~dl~~g~~~~lt-~~~--~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 362 RSMIMVNRTNGKFNIARQDLETGAMQVLT-STR--LDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred CEEEEEEecCCceEEEEEECCCCCeEEcc-CCC--CCCCceECCCCCEEEEEEe
Confidence 99888766445 4556787777643222 221 2224579999998776554
No 229
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.69 E-value=3.2e-15 Score=104.44 Aligned_cols=189 Identities=17% Similarity=0.246 Sum_probs=136.8
Q ss_pred EEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCCeEEEEeCCCCceeeE
Q 040370 24 SVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDGAIRLWDGVSANCVRS 102 (228)
Q Consensus 24 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~ 102 (228)
-++|+|+|+++|+.++- .+.|-|.++.+..+.+.. -..|.-+.|..+..+++ ....|+.|.+|++...+-..+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-----ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-----LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-----HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEE
Confidence 36799999999999876 777888887665444433 45678889998776554 557889999999998887777
Q ss_pred EecccccceeEEEEECCCCCE-EEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC-------
Q 040370 103 IVGAHGTAEATSANFTKDQRF-VLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP------- 174 (228)
Q Consensus 103 ~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 174 (228)
+... ...+.+++|+|||+. |.+..-+-.|.+|.+.+.+... +.. ....+...+|+|++++.+.....
T Consensus 87 Ideg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~--pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~ 161 (447)
T KOG4497|consen 87 IDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPH--PKTNVKGYAFHPDGQFCAILSRRDCKDYVQ 161 (447)
T ss_pred eccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecc--cccCceeEEECCCCceeeeeecccHHHHHH
Confidence 7665 778999999999965 5566678899999998765433 222 22334678899999988775443
Q ss_pred ----------------------------CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 175 ----------------------------SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 175 ----------------------------d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
+..+.+||---...+... .-.-.+..++|+|.+++|+.|+.|+.+++-+
T Consensus 162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY--e~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY--ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred HHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee--eeccceeEEEeccccceEEeeccchhhhhhc
Confidence 234555653322222222 1234688899999999999999999998744
No 230
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=7.6e-16 Score=112.32 Aligned_cols=212 Identities=20% Similarity=0.280 Sum_probs=143.5
Q ss_pred EEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeecc---------------------------------
Q 040370 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANV--------------------------------- 59 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~--------------------------------- 59 (228)
.++..|.+.|..+.|+..|..|++|+.|..|.+||...+.....+..
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 45568999999999999999999999999999999865443222110
Q ss_pred -----------ceeeeccceeeEEeCCC-CCeEEEEecCCeEEEEeCCCCceeeEEecc---------------------
Q 040370 60 -----------PEISVNGAINQVRYSST-GGMYVTASKDGAIRLWDGVSANCVRSIVGA--------------------- 106 (228)
Q Consensus 60 -----------~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--------------------- 106 (228)
....|.++|..++.-|+ ...|.+++.|+.+.-.|++.......+...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~ 295 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN 295 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence 01223667777777774 346778888888888887664332221110
Q ss_pred --------------------------------------cccceeEEEEECCCCCEEEEeeCCCeEEEEEccC--C-----
Q 040370 107 --------------------------------------HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS--G----- 141 (228)
Q Consensus 107 --------------------------------------~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~--~----- 141 (228)
.....|++++|+.++.-|+++..|-.|+++.-.- |
T Consensus 296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~ 375 (559)
T KOG1334|consen 296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDP 375 (559)
T ss_pred ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCC
Confidence 0123456666665555555555666666663211 1
Q ss_pred -----eeEE-EEecceeeeeeeEEEEC-CCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEE
Q 040370 142 -----RLVK-QYLGATHTQLRFQAVFN-DTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFIT 214 (228)
Q Consensus 142 -----~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 214 (228)
..+. .+++|.....+..+-|- |...|+++ |++-|.|.||+-.+++.+..+ .+...-|+|+.=+|--..||+
T Consensus 376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvS-GSDCGhIFiW~K~t~eii~~M-egDr~VVNCLEpHP~~PvLAs 453 (559)
T KOG1334|consen 376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVS-GSDCGHIFIWDKKTGEIIRFM-EGDRHVVNCLEPHPHLPVLAS 453 (559)
T ss_pred CcchhhccchhhcccccccccceeeeccCccceEEe-cCccceEEEEecchhHHHHHh-hcccceEeccCCCCCCchhhc
Confidence 1112 25565555555566544 55566555 666799999998888877776 555559999999999999999
Q ss_pred ecCCCCEEEeee
Q 040370 215 CGTDRSVRFWKE 226 (228)
Q Consensus 215 ~~~dg~i~vwd~ 226 (228)
+|-|.-||||-.
T Consensus 454 SGid~DVKIWTP 465 (559)
T KOG1334|consen 454 SGIDHDVKIWTP 465 (559)
T ss_pred cCCccceeeecC
Confidence 999999999964
No 231
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.7e-14 Score=111.97 Aligned_cols=201 Identities=19% Similarity=0.261 Sum_probs=148.0
Q ss_pred eEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC--Cce
Q 040370 22 VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS--ANC 99 (228)
Q Consensus 22 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~--~~~ 99 (228)
-.++.+++.+.+.+..-.. .+.+|+..+............+|.-.+++.++||.++++++|..||.|.+|.--. ...
T Consensus 163 ~~~I~~~~~ge~~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHMC-KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred CccEEEcCCceEEEEEEee-eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 4667788888777766654 5788888775522222222334466689999999999999999999999996322 222
Q ss_pred eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEE
Q 040370 100 VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIV 179 (228)
Q Consensus 100 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 179 (228)
...-..|=|..+|++++|+++|.+|++|+..+.+.+|.+.+++ +++. +.-...+..+.++|++.+.....+ |+.|.
T Consensus 242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfL-PRLgs~I~~i~vS~ds~~~sl~~~-DNqI~ 317 (792)
T KOG1963|consen 242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFL-PRLGSPILHIVVSPDSDLYSLVLE-DNQIH 317 (792)
T ss_pred ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccc-cccCCeeEEEEEcCCCCeEEEEec-CceEE
Confidence 2222223236799999999999999999999999999999987 2232 236778889999999999888777 89999
Q ss_pred EEEcCCcceeEEee----------cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 180 IWDALTAEKVAKWS----------SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 180 i~d~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+....+.+....+. ....+-.+.+.++|..+.++-.+..|.|.+||+.
T Consensus 318 li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~ 375 (792)
T KOG1963|consen 318 LIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLY 375 (792)
T ss_pred EEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecc
Confidence 99876655433331 1234456778999977788889999999999964
No 232
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=1.5e-14 Score=102.85 Aligned_cols=181 Identities=15% Similarity=0.118 Sum_probs=138.1
Q ss_pred cceEEEEEeCCC-CEEEEecCC--CeEEEEEcccceEEeeecccee-----eeccceeeEEeCCC--CCeEEEEecCCeE
Q 040370 20 HNVRSVSFHPSG-DFLLAGTDH--PIAHLYDVNTFQCYLSANVPEI-----SVNGAINQVRYSST--GGMYVTASKDGAI 89 (228)
Q Consensus 20 ~~v~~~~~~~~~-~~l~~~~~d--~~i~vw~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~--~~~l~~~~~dg~v 89 (228)
.++..+.-+|.. ..+|+|+.. ..+.+||++..+.+...+.... ...-.++++.|-|. ...|+++..-+.+
T Consensus 149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv 228 (412)
T KOG3881|consen 149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV 228 (412)
T ss_pred CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence 455666666644 455668888 8899999998866554432211 11234678889887 7899999999999
Q ss_pred EEEeCCCCc-eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEE-EecceeeeeeeEEEECCCCcE
Q 040370 90 RLWDGVSAN-CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQ-YLGATHTQLRFQAVFNDTEEF 167 (228)
Q Consensus 90 ~iwd~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 167 (228)
++||.+.++ ++..+... ..+++++...|+++.+++|..-+.+..+|++.++.... +.+ ....+..+..+|..++
T Consensus 229 R~YDt~~qRRPV~~fd~~--E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg--~tGsirsih~hp~~~~ 304 (412)
T KOG3881|consen 229 RLYDTRHQRRPVAQFDFL--ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG--ITGSIRSIHCHPTHPV 304 (412)
T ss_pred EEecCcccCcceeEeccc--cCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC--ccCCcceEEEcCCCce
Confidence 999999764 55555554 67899999999999999999999999999999988776 554 5677888999999999
Q ss_pred EEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC
Q 040370 168 VLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP 207 (228)
Q Consensus 168 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (228)
++++|- |+.+||+|+++.+.+.... -.+.++++-+.+
T Consensus 305 las~GL-DRyvRIhD~ktrkll~kvY--vKs~lt~il~~~ 341 (412)
T KOG3881|consen 305 LASCGL-DRYVRIHDIKTRKLLHKVY--VKSRLTFILLRD 341 (412)
T ss_pred EEeecc-ceeEEEeecccchhhhhhh--hhccccEEEecC
Confidence 988776 8999999999976665542 234566666654
No 233
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.66 E-value=1.1e-16 Score=123.57 Aligned_cols=204 Identities=12% Similarity=0.217 Sum_probs=147.0
Q ss_pred ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370 10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI 89 (228)
Q Consensus 10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 89 (228)
.......+|.+.|+.++.+.++-++++++.|..|++|.+..+.++..+. +| .+.|++++|+|-. +.+.||++
T Consensus 223 ~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLr---gh-tgavtaiafsP~~----sss~dgt~ 294 (1113)
T KOG0644|consen 223 RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLR---GH-TGAVTAIAFSPRA----SSSDDGTC 294 (1113)
T ss_pred hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHh---cc-ccceeeeccCccc----cCCCCCce
Confidence 3445566999999999999999999999999999999999998776555 34 8999999999954 77889999
Q ss_pred EEEeCCCCceeeEEe---cccccceeEEEEECCCCC-------------------------------------EEEEeeC
Q 040370 90 RLWDGVSANCVRSIV---GAHGTAEATSANFTKDQR-------------------------------------FVLSCGK 129 (228)
Q Consensus 90 ~iwd~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~-------------------------------------~l~~~~~ 129 (228)
++||.+- ....... .......+.++.|..++. +.+++-.
T Consensus 295 ~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~ 373 (1113)
T KOG0644|consen 295 RIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARN 373 (1113)
T ss_pred Eeccccc-cccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeee
Confidence 9999871 1000000 000011222222222222 2223333
Q ss_pred CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCC
Q 040370 130 DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAE 209 (228)
Q Consensus 130 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (228)
+-.+.+|++.++...+.+.+ +....+.+.++|-+..++.+.+.||...|||+-.|.+......+| +.+...+|+++|
T Consensus 374 ~~~~~vwnl~~g~l~H~l~g--hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdg 450 (1113)
T KOG0644|consen 374 DHRLCVWNLYTGQLLHNLMG--HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDG 450 (1113)
T ss_pred eeEeeeeecccchhhhhhcc--cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCC
Confidence 44567777777777777666 566677888999998888888889999999999998888776564 556678999999
Q ss_pred cEEEEecCCCCEEEee
Q 040370 210 AAFITCGTDRSVRFWK 225 (228)
Q Consensus 210 ~~l~s~~~dg~i~vwd 225 (228)
..++....-|.+.|..
T Consensus 451 ts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 451 TSIALSDDHGQLYILG 466 (1113)
T ss_pred ceEecCCCCCceEEec
Confidence 9888877777777653
No 234
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=3.1e-14 Score=108.63 Aligned_cols=175 Identities=11% Similarity=0.105 Sum_probs=117.0
Q ss_pred CcceEEEEEeCCCCEEEEe-cCCC--eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC-Ce--EEEE
Q 040370 19 THNVRSVSFHPSGDFLLAG-TDHP--IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD-GA--IRLW 92 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~-~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~--v~iw 92 (228)
...+...+|+|||+.|+.. +.+| .|.+||+++++....... ...+....|+|+|+.|+..+.+ +. |.++
T Consensus 242 ~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~-----~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 242 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG-----RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKV 316 (429)
T ss_pred CCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC-----CCCcCceEECCCCCEEEEEeCCCCCceEEEE
Confidence 3445578999999988854 4344 588999988765432221 3456789999999988766654 44 5555
Q ss_pred eCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC---CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEE
Q 040370 93 DGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD---STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVL 169 (228)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (228)
|+.+++.. .+... ........|+|+|++++..+.+ ..|.+||+.+++.. .+... .......|+|++..++
T Consensus 317 d~~~g~~~-~lt~~--~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~---~~~~~p~~SpDG~~i~ 389 (429)
T PRK03629 317 NINGGAPQ-RITWE--GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT---FLDETPSIAPNGTMVI 389 (429)
T ss_pred ECCCCCeE-EeecC--CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC---CCCCCceECCCCCEEE
Confidence 66665443 33322 3345678899999998876543 35889999877543 33221 1234577999999998
Q ss_pred EeeCCCC--eEEEEEcCCcceeEEeecCCCCCcEEEEeCC
Q 040370 170 SIDEPSN--EIVIWDALTAEKVAKWSSNHIGAPRWIEHSP 207 (228)
Q Consensus 170 ~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (228)
.++...+ .+.++++ ++.....+ ..|.+.+...+|+|
T Consensus 390 ~~s~~~~~~~l~~~~~-~G~~~~~l-~~~~~~~~~p~Wsp 427 (429)
T PRK03629 390 YSSSQGMGSVLNLVST-DGRFKARL-PATDGQVKFPAWSP 427 (429)
T ss_pred EEEcCCCceEEEEEEC-CCCCeEEC-ccCCCCcCCcccCC
Confidence 8776322 3667776 45555555 46788888899987
No 235
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.66 E-value=3.4e-16 Score=105.92 Aligned_cols=135 Identities=21% Similarity=0.292 Sum_probs=107.7
Q ss_pred CCcCCcccc--------ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeecc-ceeeeccceeeE
Q 040370 1 FFDFSKATA--------KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANV-PEISVNGAINQV 71 (228)
Q Consensus 1 iwd~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~~~~~i~~~ 71 (228)
+||++.... +-......|..+|.++.|.+..+.=++|+.+..+..|+++.......... .... +..|..+
T Consensus 179 ~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk-npGv~gv 257 (323)
T KOG0322|consen 179 IWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLK-NPGVSGV 257 (323)
T ss_pred EEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEec-CCCccce
Confidence 477775421 23334457999999999998766777888888899999876422111111 1112 5578899
Q ss_pred EeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEc
Q 040370 72 RYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV 138 (228)
Q Consensus 72 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~ 138 (228)
..-||++.+||++.|+.|+||+.++.+++..++.| ...|++++|+|+.+.+++++.|++|.+|++
T Consensus 258 rIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH--sagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 258 RIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH--SAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEccCCcEEeecccCCcEEEEEeccCCchhhhhhh--hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999999999999887 689999999999999999999999999986
No 236
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.5e-13 Score=105.39 Aligned_cols=173 Identities=12% Similarity=0.054 Sum_probs=116.6
Q ss_pred CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec---CCeEEEEeCCCCceeeEEecccccceeEEEEE
Q 040370 41 PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK---DGAIRLWDGVSANCVRSIVGAHGTAEATSANF 117 (228)
Q Consensus 41 ~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~ 117 (228)
..|.++|.+...... +.. + ...+.+..|+|+|+.|+..+. +..|.+||+.+++... +... ...+....|
T Consensus 182 ~~l~~~d~dg~~~~~-lt~---~-~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~--~g~~~~~~~ 253 (435)
T PRK05137 182 KRLAIMDQDGANVRY-LTD---G-SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNF--PGMTFAPRF 253 (435)
T ss_pred eEEEEECCCCCCcEE-Eec---C-CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecC--CCcccCcEE
Confidence 378888876544322 211 1 567899999999998887753 4689999998876543 3322 445678899
Q ss_pred CCCCCEEE-EeeCCCe--EEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC--eEEEEEcCCcceeEEe
Q 040370 118 TKDQRFVL-SCGKDST--VKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN--EIVIWDALTAEKVAKW 192 (228)
Q Consensus 118 ~~~~~~l~-~~~~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~ 192 (228)
+|||+.|+ +.+.++. |++||+.+++.. .+.. +........|+|+++.++.++..++ .|+++|+..++... +
T Consensus 254 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~--~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-l 329 (435)
T PRK05137 254 SPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTD--SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-I 329 (435)
T ss_pred CCCCCEEEEEEecCCCceEEEEECCCCceE-EccC--CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-e
Confidence 99998775 5555554 888898876543 3332 3334566899999998887654333 68888876655433 3
Q ss_pred ecCCCCCcEEEEeCCCCcEEEEecCC---CCEEEeee
Q 040370 193 SSNHIGAPRWIEHSPAEAAFITCGTD---RSVRFWKE 226 (228)
Q Consensus 193 ~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~ 226 (228)
..+.+.+....|+|+|+.|+..+.+ ..|.+||+
T Consensus 330 -t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~ 365 (435)
T PRK05137 330 -SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKP 365 (435)
T ss_pred -ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEEC
Confidence 2234556678899999999876643 24666664
No 237
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.65 E-value=1e-14 Score=102.46 Aligned_cols=210 Identities=17% Similarity=0.233 Sum_probs=142.0
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceE-----Eeeeccce--------eeeccceeeEEeCCCCC--eEE
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQC-----YLSANVPE--------ISVNGAINQVRYSSTGG--MYV 81 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~-----~~~~~~~~--------~~~~~~i~~~~~~~~~~--~l~ 81 (228)
....-|.++.|...|++||+|..+|.|.++.-+.... ...++.+. ......|..+.|.++++ .++
T Consensus 23 teadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred chhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 3456789999999999999999999999997543221 11111111 01145789999998654 677
Q ss_pred EEecCCeEEEEeCCCCceee----------------------------------EEecccccceeEEEEECCCCCEEEEe
Q 040370 82 TASKDGAIRLWDGVSANCVR----------------------------------SIVGAHGTAEATSANFTKDQRFVLSC 127 (228)
Q Consensus 82 ~~~~dg~v~iwd~~~~~~~~----------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~ 127 (228)
....|.+|++|.++...... ....+.|..-|+++.++.|+..++++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 78899999999875422111 11122346788999999999988887
Q ss_pred eCCCeEEEEEccCCeeEEEE---ecce---eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEE------e---
Q 040370 128 GKDSTVKLWEVSSGRLVKQY---LGAT---HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAK------W--- 192 (228)
Q Consensus 128 ~~d~~i~~wd~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~------~--- 192 (228)
.|=.|.+|.++-......+ +.+. -...+++..|+|..-.+++-++..|+|++-|+|.....-. .
T Consensus 183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 4778999998743332222 2111 2345677889998766665555579999999985432111 1
Q ss_pred ------ecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeecC
Q 040370 193 ------SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL 228 (228)
Q Consensus 193 ------~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~l 228 (228)
..+-...|..+.|+++|+++++-+. -+|++||+.|
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nm 302 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNM 302 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccc
Confidence 1122346888999999999997643 6799999865
No 238
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=1.1e-13 Score=111.41 Aligned_cols=210 Identities=13% Similarity=0.188 Sum_probs=147.1
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceE--E--eeeccceeeeccceee-EEeCC-CCC-eEEEEecCCeE
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQC--Y--LSANVPEISVNGAINQ-VRYSS-TGG-MYVTASKDGAI 89 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~--~--~~~~~~~~~~~~~i~~-~~~~~-~~~-~l~~~~~dg~v 89 (228)
....++.++...+.++.+|+++.||.|++.+++.... . .....+..+..+.+.+ -+|.. .+. .++.+..-+.|
T Consensus 1096 ~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~i 1175 (1431)
T KOG1240|consen 1096 PEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRI 1175 (1431)
T ss_pred ccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccce
Confidence 3577899999999999999999999999999876221 1 1111111121333333 34443 233 67788888999
Q ss_pred EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECC---CCc
Q 040370 90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFND---TEE 166 (228)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 166 (228)
..||+++......++.....+.|++++.+|.+++++.|+..|.+.+||+|-+.++.....+.+ ..+..+..+| ...
T Consensus 1176 v~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S 1254 (1431)
T KOG1240|consen 1176 VSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQES 1254 (1431)
T ss_pred EEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCc
Confidence 999999887776666655578999999999999999999999999999998888887764432 4444444443 334
Q ss_pred EEEEeeC-CCCeEEEEEcCCcceeEEeecC------------------CCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 167 FVLSIDE-PSNEIVIWDALTAEKVAKWSSN------------------HIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 167 ~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
..++++. ..+.+.+|++.+|.....+... +.-......+...+..+.+|+.|..|+.||..
T Consensus 1255 ~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1255 VSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred eEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 5555555 5789999999998665554221 11112223343455689999999999999963
No 239
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.64 E-value=8.6e-12 Score=92.81 Aligned_cols=207 Identities=15% Similarity=0.188 Sum_probs=137.6
Q ss_pred cCcceEEEEEeCCCCEEEEec-CCCeEEEEEccc-ceEEeeeccc--ee-------eeccceeeEEeCCCCCeEEEEe-c
Q 040370 18 DTHNVRSVSFHPSGDFLLAGT-DHPIAHLYDVNT-FQCYLSANVP--EI-------SVNGAINQVRYSSTGGMYVTAS-K 85 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~-~~~~~~~~~~--~~-------~~~~~i~~~~~~~~~~~l~~~~-~ 85 (228)
.......++++|++++|+++. .+|.|.++++.. +......... .+ ......+++.|+|+++++++.. .
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG 164 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG 164 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence 445667899999999998876 489999999987 4433221111 00 0034578999999999888764 3
Q ss_pred CCeEEEEeCCCCc--e--eeEEecccccceeEEEEECCCCCEEEEee-CCCeEEEEEcc--CCee--EEEEecc----ee
Q 040370 86 DGAIRLWDGVSAN--C--VRSIVGAHGTAEATSANFTKDQRFVLSCG-KDSTVKLWEVS--SGRL--VKQYLGA----TH 152 (228)
Q Consensus 86 dg~v~iwd~~~~~--~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~--~~~~--~~~~~~~----~~ 152 (228)
...|.+|++.... . ...+.... ......+.|+|++++++... .+++|.++++. ++.. +...... ..
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~-G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 243 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPP-GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTG 243 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECST-TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCS
T ss_pred CCEEEEEEEeCCCceEEEeecccccc-CCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccc
Confidence 4579999987654 2 22333332 55678999999999876554 57789999998 4432 2222211 11
Q ss_pred eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcC--Ccce--eEEeecCCCCCcEEEEeCCCCcEEEEec-CCCCEEEeee
Q 040370 153 TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL--TAEK--VAKWSSNHIGAPRWIEHSPAEAAFITCG-TDRSVRFWKE 226 (228)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~ 226 (228)
......+.++|++++++++....+.|.+|++. ++.. +..+ .......+.++++|+|++|+++. .++.|.+|++
T Consensus 244 ~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~-~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 244 ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTV-PTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEE-EESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEE-eCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 12567888999999999998888999999983 2332 2222 22234579999999999988776 5678999876
No 240
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=5.1e-13 Score=101.75 Aligned_cols=200 Identities=9% Similarity=0.054 Sum_probs=122.2
Q ss_pred ecCcceEEEEEeCCCCEE---EEecCC--CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-----C
Q 040370 17 QDTHNVRSVSFHPSGDFL---LAGTDH--PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK-----D 86 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l---~~~~~d--~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d 86 (228)
.....+..-+|+|||+.+ ++...+ ..|.+.++..++....... .+.....+|+|||+.|+..+. +
T Consensus 182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~-----~g~~~~p~wSPDG~~Laf~s~~~g~~d 256 (428)
T PRK01029 182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL-----QGNQLMPTFSPRKKLLAFISDRYGNPD 256 (428)
T ss_pred cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC-----CCCccceEECCCCCEEEEEECCCCCcc
Confidence 345567788999998753 244333 4677888887764433322 334456899999998876543 2
Q ss_pred CeEEEEeCCCC--ceeeEEecccccceeEEEEECCCCCEEEEee-CCCeEEEE--EccC-CeeEEEEecceeeeeeeEEE
Q 040370 87 GAIRLWDGVSA--NCVRSIVGAHGTAEATSANFTKDQRFVLSCG-KDSTVKLW--EVSS-GRLVKQYLGATHTQLRFQAV 160 (228)
Q Consensus 87 g~v~iwd~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~w--d~~~-~~~~~~~~~~~~~~~~~~~~ 160 (228)
..+..|++..+ .....+.... ........|+|||+.|+..+ .+|...+| ++.. +.....+.. .........
T Consensus 257 i~~~~~~~~~g~~g~~~~lt~~~-~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~--~~~~~~~p~ 333 (428)
T PRK01029 257 LFIQSFSLETGAIGKPRRLLNEA-FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK--KYRNSSCPA 333 (428)
T ss_pred eeEEEeecccCCCCcceEeecCC-CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc--CCCCcccee
Confidence 34455777653 1222232211 22345679999999877665 45654444 4432 222333322 223446788
Q ss_pred ECCCCcEEEEeeCCC--CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEec-CC--CCEEEeee
Q 040370 161 FNDTEEFVLSIDEPS--NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCG-TD--RSVRFWKE 226 (228)
Q Consensus 161 ~~~~~~~~~~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d--g~i~vwd~ 226 (228)
|+|+++.++.+...+ ..|.+||+.+++..... .....+....|+|||+.|+..+ .+ ..|.++|+
T Consensus 334 wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt--~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 334 WSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT--TSPENKESPSWAIDSLHLVYSAGNSNESELYLISL 402 (428)
T ss_pred ECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc--CCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 999999988765533 47999999888764433 2234567899999999877443 33 34666654
No 241
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=9e-14 Score=106.17 Aligned_cols=173 Identities=9% Similarity=0.037 Sum_probs=109.8
Q ss_pred CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC---CeEEEEeCCCCceeeEEecccccceeEEEEE
Q 040370 41 PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD---GAIRLWDGVSANCVRSIVGAHGTAEATSANF 117 (228)
Q Consensus 41 ~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~ 117 (228)
..|.++|...... ..... + ...+.+.+|+|+|+.|+..+.+ ..|.+||+.+++..... .. ........|
T Consensus 176 ~~L~~~D~dG~~~-~~l~~---~-~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~-~~--~g~~~~~~~ 247 (427)
T PRK02889 176 YQLQISDADGQNA-QSALS---S-PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA-NF--KGSNSAPAW 247 (427)
T ss_pred cEEEEECCCCCCc-eEecc---C-CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee-cC--CCCccceEE
Confidence 4566777643322 22211 1 5678899999999988877643 45999999888754332 22 334568899
Q ss_pred CCCCCEEE-EeeCCCeEEEEE--ccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEc--CCcceeEEe
Q 040370 118 TKDQRFVL-SCGKDSTVKLWE--VSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDA--LTAEKVAKW 192 (228)
Q Consensus 118 ~~~~~~l~-~~~~d~~i~~wd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~--~~~~~~~~~ 192 (228)
+||++.|+ +.+.++...+|. +..+. ...+.. +........|+|+++.++.++..++...+|.+ .+++.....
T Consensus 248 SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~--~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 248 SPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQ--SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT 324 (427)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCC-cEECCC--CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe
Confidence 99998876 566777756555 44433 333332 23344567899999988876654566666654 444432222
Q ss_pred ecCCCCCcEEEEeCCCCcEEEEecCCC---CEEEeee
Q 040370 193 SSNHIGAPRWIEHSPAEAAFITCGTDR---SVRFWKE 226 (228)
Q Consensus 193 ~~~~~~~v~~~~~~~~~~~l~s~~~dg---~i~vwd~ 226 (228)
..........|+|+|++|+..+.++ .|.+||+
T Consensus 325 --~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~ 359 (427)
T PRK02889 325 --FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDL 359 (427)
T ss_pred --cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEEC
Confidence 1223344678999999998776554 5888885
No 242
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=9.7e-14 Score=106.26 Aligned_cols=173 Identities=12% Similarity=0.051 Sum_probs=114.9
Q ss_pred CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC---CeEEEEeCCCCceeeEEecccccceeEEEEE
Q 040370 41 PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD---GAIRLWDGVSANCVRSIVGAHGTAEATSANF 117 (228)
Q Consensus 41 ~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~ 117 (228)
..|.+||........ +.. + ...+.+.+|+|+|+.|+..+.+ ..|.+||+.+++..... .. .....+..|
T Consensus 184 ~~l~i~D~~g~~~~~-lt~---~-~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~-~~--~g~~~~~~~ 255 (433)
T PRK04922 184 YALQVADSDGYNPQT-ILR---S-AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA-SF--RGINGAPSF 255 (433)
T ss_pred EEEEEECCCCCCceE-eec---C-CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec-cC--CCCccCceE
Confidence 368888886543322 211 1 5578899999999988887643 46999999877654332 22 334457899
Q ss_pred CCCCCEEE-EeeCCC--eEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCe--EEEEEcCCcceeEEe
Q 040370 118 TKDQRFVL-SCGKDS--TVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNE--IVIWDALTAEKVAKW 192 (228)
Q Consensus 118 ~~~~~~l~-~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--i~i~d~~~~~~~~~~ 192 (228)
+|+|+.++ +.+.++ .|++||+.+++... +.. +........|+|+++.++.++..++. |+++|+.+++.....
T Consensus 256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~--~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt 332 (433)
T PRK04922 256 SPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTN--HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT 332 (433)
T ss_pred CCCCCEEEEEEeCCCCceEEEEECCCCCeEE-Ccc--CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee
Confidence 99998775 445555 59999998876433 322 22334567899999988877654454 666677666543322
Q ss_pred ecCCCCCcEEEEeCCCCcEEEEecCCC---CEEEeee
Q 040370 193 SSNHIGAPRWIEHSPAEAAFITCGTDR---SVRFWKE 226 (228)
Q Consensus 193 ~~~~~~~v~~~~~~~~~~~l~s~~~dg---~i~vwd~ 226 (228)
.+.......+|+|+|++|+..+.++ .|.+||+
T Consensus 333 --~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~ 367 (433)
T PRK04922 333 --FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDL 367 (433)
T ss_pred --cCCCCccCEEECCCCCEEEEEECCCCceeEEEEEC
Confidence 2233445689999999988765433 5888885
No 243
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.60 E-value=2.3e-13 Score=93.69 Aligned_cols=185 Identities=15% Similarity=0.139 Sum_probs=129.8
Q ss_pred CcceEEEEEeC---CCC-EEEEecCCCeEEEEEcccceEEeeeccceeee--ccceeeEEeCCCCCeEEEEecCCeEEEE
Q 040370 19 THNVRSVSFHP---SGD-FLLAGTDHPIAHLYDVNTFQCYLSANVPEISV--NGAINQVRYSSTGGMYVTASKDGAIRLW 92 (228)
Q Consensus 19 ~~~v~~~~~~~---~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~v~iw 92 (228)
...+..+.|.. ++. .++-+-..|.|.++.....+....+....... .....++.|++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 45677777764 455 55667778999999876554433333322110 1124577899999999999999999966
Q ss_pred eCCCCcee--eEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCe-eEEEEecceeeeeeeEEEECCCCcEE
Q 040370 93 DGVSANCV--RSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGR-LVKQYLGATHTQLRFQAVFNDTEEFV 168 (228)
Q Consensus 93 d~~~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (228)
+....... +.++.| ..++.-..|+. +.+.+++|+.|+.+..||+|..+ .+.. ....|...+.++..+|..+..
T Consensus 149 ~~t~~~le~vq~wk~H--e~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~-n~kvH~~GV~SI~ss~~~~~~ 225 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVH--EFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH-NSKVHTSGVVSIYSSPPKPTY 225 (339)
T ss_pred ecceeeeeeccccccc--ceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee-cceeeecceEEEecCCCCCce
Confidence 65544433 356665 77888888887 55789999999999999999443 2222 123367778888888877777
Q ss_pred EEeeCCCCeEEEEEcCC-cceeEEeecCCCCCcEEEEeCCC
Q 040370 169 LSIDEPSNEIVIWDALT-AEKVAKWSSNHIGAPRWIEHSPA 208 (228)
Q Consensus 169 ~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~ 208 (228)
+++|+.|-.|++||.|+ ++++... .-.+.|..+.++|.
T Consensus 226 I~TGsYDe~i~~~DtRnm~kPl~~~--~v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 226 IATGSYDECIRVLDTRNMGKPLFKA--KVGGGVWRIKHHPE 264 (339)
T ss_pred EEEeccccceeeeehhcccCccccC--ccccceEEEEecch
Confidence 77777799999999995 5555543 44588999999983
No 244
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.59 E-value=1.4e-12 Score=89.96 Aligned_cols=186 Identities=16% Similarity=0.155 Sum_probs=132.3
Q ss_pred CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC---CCC-eEEEEecCCeEEEEeCCCCceeeEEeccc----ccc
Q 040370 39 DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS---TGG-MYVTASKDGAIRLWDGVSANCVRSIVGAH----GTA 110 (228)
Q Consensus 39 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~----~~~ 110 (228)
..|.+.+|++...+........... .+.+..+.|.. +|. .++-+..+|.|.++..........+..-. ...
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~d-ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~ 122 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTD-TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVV 122 (339)
T ss_pred eccceEEEeecccccCccceeeeec-ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhe
Confidence 3467889998876654411111122 55677777764 344 56667788999999866544333332211 012
Q ss_pred eeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEE--EEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcC-Ccc
Q 040370 111 EATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVK--QYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL-TAE 187 (228)
Q Consensus 111 ~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~ 187 (228)
...++.|++.+..++++..+|.+.+-+...+.... ..+. |.-....+.|+...+.++.+|++|+.+..||+| .++
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~--He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV--HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc--cceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence 35678899999999999999999976665554443 4554 666777788888888888889999999999999 344
Q ss_pred eeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeeec
Q 040370 188 KVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 188 ~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~ 227 (228)
.+..-..-|...|.+|.-+| .+.+++||+.|..|++||.+
T Consensus 201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtR 241 (339)
T KOG0280|consen 201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTR 241 (339)
T ss_pred eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehh
Confidence 44443457889999999887 67899999999999999987
No 245
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.59 E-value=1.3e-12 Score=99.99 Aligned_cols=173 Identities=12% Similarity=0.060 Sum_probs=115.0
Q ss_pred CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC---CeEEEEeCCCCceeeEEecccccceeEEEEE
Q 040370 41 PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD---GAIRLWDGVSANCVRSIVGAHGTAEATSANF 117 (228)
Q Consensus 41 ~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~ 117 (228)
..|.++|........... + ...+...+|+|+|++++.+..+ ..|++||+.+++...... . .....++.|
T Consensus 170 ~~l~~~d~~g~~~~~l~~----~-~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~--~~~~~~~~~ 241 (417)
T TIGR02800 170 YELQVADYDGANPQTITR----S-REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-F--PGMNGAPAF 241 (417)
T ss_pred ceEEEEcCCCCCCEEeec----C-CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-C--CCCccceEE
Confidence 357777775443322211 1 4467888999999998877644 479999998876543332 2 345567899
Q ss_pred CCCCCEEEE-eeCCC--eEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC--eEEEEEcCCcceeEEe
Q 040370 118 TKDQRFVLS-CGKDS--TVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN--EIVIWDALTAEKVAKW 192 (228)
Q Consensus 118 ~~~~~~l~~-~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~ 192 (228)
+|+++.|+. .+.++ .|++||+.+++... +.. +........|+|+++.++.++..++ .|+++|+.+++... +
T Consensus 242 spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~--~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l 317 (417)
T TIGR02800 242 SPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTN--GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-L 317 (417)
T ss_pred CCCCCEEEEEECCCCCccEEEEECCCCCEEE-CCC--CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-e
Confidence 999987764 44444 58899988765433 222 2223345678999998877654333 68888887765433 2
Q ss_pred ecCCCCCcEEEEeCCCCcEEEEecCCC---CEEEeee
Q 040370 193 SSNHIGAPRWIEHSPAEAAFITCGTDR---SVRFWKE 226 (228)
Q Consensus 193 ~~~~~~~v~~~~~~~~~~~l~s~~~dg---~i~vwd~ 226 (228)
..+........|+|++++++.++.++ .|.+||+
T Consensus 318 -~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~ 353 (417)
T TIGR02800 318 -TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDL 353 (417)
T ss_pred -ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeC
Confidence 23445677889999999998887765 6777764
No 246
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.58 E-value=8.1e-13 Score=92.65 Aligned_cols=203 Identities=14% Similarity=0.244 Sum_probs=135.8
Q ss_pred EEeecCcceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC------
Q 040370 14 RVIQDTHNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD------ 86 (228)
Q Consensus 14 ~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------ 86 (228)
++.....++.+++|+|+|+.++ +..-+-.|.||.+.+.+....... +..+..++|+|+|++.+.++.-
T Consensus 86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p-----K~~~kg~~f~~dg~f~ai~sRrDCkdyv 160 (447)
T KOG4497|consen 86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP-----KTNVKGYAFHPDGQFCAILSRRDCKDYV 160 (447)
T ss_pred EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccc-----ccCceeEEECCCCceeeeeecccHHHHH
Confidence 3445678999999999996655 566688999999998765443222 4556888999999877665431
Q ss_pred ------------------------------CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEE
Q 040370 87 ------------------------------GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLW 136 (228)
Q Consensus 87 ------------------------------g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~w 136 (228)
..+.+||---.-.+. ..+.+-.+..+.|+|.+++|+.|+.|+.+|+.
T Consensus 161 ~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~---aYe~~lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 161 QISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY---AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred HHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee---eeeeccceeEEEeccccceEEeeccchhhhhh
Confidence 223334321111111 11224568889999999999999999998875
Q ss_pred EccCCee------------------------------------------------------------EEEEec----cee
Q 040370 137 EVSSGRL------------------------------------------------------------VKQYLG----ATH 152 (228)
Q Consensus 137 d~~~~~~------------------------------------------------------------~~~~~~----~~~ 152 (228)
+--+-+. +..++. +..
T Consensus 238 nh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnP 317 (447)
T KOG4497|consen 238 NHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNP 317 (447)
T ss_pred ceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCc
Confidence 3211110 000000 001
Q ss_pred eeeeeEEEECCCCcEEEEeeCC-CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 153 TQLRFQAVFNDTEEFVLSIDEP-SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
...+..++|+++..|+++-... -+.+-+||+++.+....+ ....+|....|+|....|+.+....++.+|-+
T Consensus 318 k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL--iQk~piraf~WdP~~prL~vctg~srLY~W~p 390 (447)
T KOG4497|consen 318 KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL--IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAP 390 (447)
T ss_pred ccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh--hhccceeEEEeCCCCceEEEEcCCceEEEEcC
Confidence 2334568899999998875442 367999999988776665 34568999999998888888777777888864
No 247
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=5.3e-12 Score=94.08 Aligned_cols=197 Identities=16% Similarity=0.257 Sum_probs=136.1
Q ss_pred cCcceEEEEEeCCC--CEEEE-----ecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC-eEEEE--ecC-
Q 040370 18 DTHNVRSVSFHPSG--DFLLA-----GTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG-MYVTA--SKD- 86 (228)
Q Consensus 18 ~~~~v~~~~~~~~~--~~l~~-----~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~--~~d- 86 (228)
|...|+.+.++|.+ ..+|+ .+.-+.|+||................- ...=..+.|++-|+ +|+.+ .-|
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF-kadkvqm~WN~~gt~LLvLastdVDk 242 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF-KADKVQMKWNKLGTALLVLASTDVDK 242 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc-ccceeEEEeccCCceEEEEEEEeecC
Confidence 57889999999863 34443 456678999988733221111111111 23334578888766 22222 222
Q ss_pred --------CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEe--eCCCeEEEEEccCCeeEEEEecceeeeee
Q 040370 87 --------GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC--GKDSTVKLWEVSSGRLVKQYLGATHTQLR 156 (228)
Q Consensus 87 --------g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 156 (228)
.++++.+++.......+.. .++|.++.|+|+++.++++ -.-..+.++|++ +.++..+ ...+.
T Consensus 243 tn~SYYGEq~Lyll~t~g~s~~V~L~k---~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df----~egpR 314 (566)
T KOG2315|consen 243 TNASYYGEQTLYLLATQGESVSVPLLK---EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF----PEGPR 314 (566)
T ss_pred CCccccccceEEEEEecCceEEEecCC---CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC----CCCCc
Confidence 4688888874444444433 7899999999999876654 455689999986 5666666 45567
Q ss_pred eEEEECCCCcEEEEeeCC--CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecC------CCCEEEeee
Q 040370 157 FQAVFNDTEEFVLSIDEP--SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGT------DRSVRFWKE 226 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------dg~i~vwd~ 226 (228)
..+.|+|.|++++.+|-. -|.+.+||+.+.+.+..+. ...-+-+.|+|||.+++|+.. |+.++||+.
T Consensus 315 N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~---a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 315 NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK---AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred cceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc---cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 789999999999988763 3899999999987777762 233456889999999999874 788999985
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.56 E-value=7.4e-11 Score=87.84 Aligned_cols=207 Identities=15% Similarity=0.197 Sum_probs=137.9
Q ss_pred ecCcceEEEEEeCCCCEEEEecC----CCeEEEEEcccc--eEEeeeccceeeeccceeeEEeCCCCCeEEEEe-cCCeE
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTD----HPIAHLYDVNTF--QCYLSANVPEISVNGAINQVRYSSTGGMYVTAS-KDGAI 89 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~----d~~i~vw~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v 89 (228)
........++++|++++|++... ++.|..|++... +....-.... . ......++++|++++++++. .+|.|
T Consensus 34 ~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-~-g~~p~~i~~~~~g~~l~vany~~g~v 111 (345)
T PF10282_consen 34 AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-G-GSSPCHIAVDPDGRFLYVANYGGGSV 111 (345)
T ss_dssp EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-S-SSCEEEEEECTTSSEEEEEETTTTEE
T ss_pred cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-C-CCCcEEEEEecCCCEEEEEEccCCeE
Confidence 34566778999999999998766 579999998864 3322222211 1 44556799999999888886 58999
Q ss_pred EEEeCCC-CceeeEE--ec---------ccccceeEEEEECCCCCEEEEeeC-CCeEEEEEccCCe--eE--EEEeccee
Q 040370 90 RLWDGVS-ANCVRSI--VG---------AHGTAEATSANFTKDQRFVLSCGK-DSTVKLWEVSSGR--LV--KQYLGATH 152 (228)
Q Consensus 90 ~iwd~~~-~~~~~~~--~~---------~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~--~~--~~~~~~~~ 152 (228)
.++++.. +...... .. ........++.++|+++++++... ...|.+|++.... .. ..+.. ..
T Consensus 112 ~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~-~~ 190 (345)
T PF10282_consen 112 SVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV-PP 190 (345)
T ss_dssp EEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC-ST
T ss_pred EEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc-cc
Confidence 9999987 3332221 11 012345788999999998887653 3479999997654 21 22222 13
Q ss_pred eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcC--Ccce--eEEee---cCC--CCCcEEEEeCCCCcEEEEec-CCCCEE
Q 040370 153 TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL--TAEK--VAKWS---SNH--IGAPRWIEHSPAEAAFITCG-TDRSVR 222 (228)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--~~~~--~~~~~---~~~--~~~v~~~~~~~~~~~l~s~~-~dg~i~ 222 (228)
......+.|+|+++++++....++.|.++++. ++.. ..... ... ......|+++|+|++|+++. .++.|.
T Consensus 191 G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~ 270 (345)
T PF10282_consen 191 GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSIS 270 (345)
T ss_dssp TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred CCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEE
Confidence 44456789999999999999989999999988 3322 22221 111 12578899999999887765 567799
Q ss_pred Eeee
Q 040370 223 FWKE 226 (228)
Q Consensus 223 vwd~ 226 (228)
+|++
T Consensus 271 vf~~ 274 (345)
T PF10282_consen 271 VFDL 274 (345)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9887
No 249
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.53 E-value=9.8e-14 Score=115.32 Aligned_cols=190 Identities=15% Similarity=0.317 Sum_probs=148.3
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS 96 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 96 (228)
.+-..|.++.=+|...+.++|+.||.+++|....++.+...+... ...|+.+.|+.+|+.+..+..||.+.+|...
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g---~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG---NSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC---cchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 355788999999999999999999999999999988777666543 5789999999999999999999999999986
Q ss_pred CceeeEEecccccceeEEEEECCCCCEEEEee---CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370 97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCG---KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE 173 (228)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
.++....+.| ......+.|-. ..+++++ .++.+.+||..-.....-+ ...|....+++++.|....++++|.
T Consensus 2282 pk~~~s~qch--nk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v-~~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2282 PKPYTSWQCH--NKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV-HTCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred CcceeccccC--Cccccceeeee--hhhhccccCCCCCcccchhcccCccccee-eeecCCCceEEEEcCcceEEEecCC
Confidence 4555555554 55666777764 5566654 5678999997532221111 1337788899999999888888655
Q ss_pred CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 174 PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 174 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+|.|++||++..+..+.+.. ++ ...++++|+..|.++||++.
T Consensus 2357 -~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2357 -KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred -cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEcc
Confidence 79999999998888777732 44 56789999999999999963
No 250
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.53 E-value=2.5e-10 Score=83.71 Aligned_cols=197 Identities=13% Similarity=0.129 Sum_probs=134.2
Q ss_pred EeCCCCEEEEecC----------CCeEEEEEcccceEEeeeccceeee---ccceeeEEeCCCCCeEEEEe-c-CCeEEE
Q 040370 27 FHPSGDFLLAGTD----------HPIAHLYDVNTFQCYLSANVPEISV---NGAINQVRYSSTGGMYVTAS-K-DGAIRL 91 (228)
Q Consensus 27 ~~~~~~~l~~~~~----------d~~i~vw~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~-~-dg~v~i 91 (228)
++||++.|+++.. +..|.+||..+.+.+..+..+.... ......++++|+|++++... . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998886654 7899999999999887776543210 22345789999999988776 3 689999
Q ss_pred EeCCCCceeeEEecccc-----------------------------cceeEEEE--------------ECC-CCCEEEEe
Q 040370 92 WDGVSANCVRSIVGAHG-----------------------------TAEATSAN--------------FTK-DQRFVLSC 127 (228)
Q Consensus 92 wd~~~~~~~~~~~~~~~-----------------------------~~~i~~~~--------------~~~-~~~~l~~~ 127 (228)
.|+.+++.+.++..... ........ |.+ ++++++..
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs 212 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT 212 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence 99998877665532110 00111111 123 66666666
Q ss_pred eCCCeEEEEEccCCe-----eEEEEecc-----eeeeeeeEEEECCCCcEEEEee-C--------CCCeEEEEEcCCcce
Q 040370 128 GKDSTVKLWEVSSGR-----LVKQYLGA-----THTQLRFQAVFNDTEEFVLSID-E--------PSNEIVIWDALTAEK 188 (228)
Q Consensus 128 ~~d~~i~~wd~~~~~-----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~--------~d~~i~i~d~~~~~~ 188 (228)
.. |+|.+.|+.... ....+... -.+.....++++++++.+++.. . ..+.|.++|..+++.
T Consensus 213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv 291 (352)
T TIGR02658 213 YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR 291 (352)
T ss_pred cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE
Confidence 55 999999964422 22222110 0122223488999998888743 1 125899999999999
Q ss_pred eEEeecCCCCCcEEEEeCCCCc-EEEEec-CCCCEEEeee
Q 040370 189 VAKWSSNHIGAPRWIEHSPAEA-AFITCG-TDRSVRFWKE 226 (228)
Q Consensus 189 ~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~dg~i~vwd~ 226 (228)
+..+..+ ..+..++++||++ +|++.. .++.|.+.|.
T Consensus 292 i~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 292 LRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred EEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 9988544 4789999999999 777666 6788999986
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.52 E-value=8.4e-12 Score=93.46 Aligned_cols=146 Identities=16% Similarity=0.208 Sum_probs=124.2
Q ss_pred CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccce
Q 040370 32 DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAE 111 (228)
Q Consensus 32 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 111 (228)
..++-|...|.|.+|+...++....+.. ..|.+.|+++.++.+-..|.+++.|+.+..|+....+.+..+... ...
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~st--~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~--~~~ 146 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLST--DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ--KPL 146 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEec--CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC--CCc
Confidence 4677788899999999999987665542 344889999999998889999999999999999999999888876 668
Q ss_pred eEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCC-----CcEEEEeeCCCCeEEEEEcCC
Q 040370 112 ATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-----EEFVLSIDEPSNEIVIWDALT 185 (228)
Q Consensus 112 i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~i~i~d~~~ 185 (228)
+.+++.+||+..+++++ +.|++||+++.+.+..|.+ |...+..+.|... |.+++++...+..+.+|-...
T Consensus 147 ~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftg--h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTG--HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecC--CCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 89999999999999986 6899999999999999998 6667777776655 788998887778888887654
No 252
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.51 E-value=2.8e-11 Score=89.01 Aligned_cols=121 Identities=17% Similarity=0.164 Sum_probs=99.4
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCC-eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHP-IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV 95 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~-~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~ 95 (228)
+|...|.-..+..+++-++.|..|| .+-|+|.++++....... -+.|.++..+|+|++++.+.....+.+.|+.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~-----lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKD-----LGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCC-----ccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 6777888888888888999999999 899999999886544332 5679999999999999999999999999999
Q ss_pred CCceeeEEecccccceeEEEEECCCCCEEEEeeCCC----eEEEEEccCCeeE
Q 040370 96 SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS----TVKLWEVSSGRLV 144 (228)
Q Consensus 96 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~~wd~~~~~~~ 144 (228)
+++....-+.. .+-|+.+.|+|+++++|-+--+| .|+++|+..++..
T Consensus 432 ngnv~~idkS~--~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 432 NGNVRLIDKSE--YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred CCCeeEecccc--cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 98865443332 67899999999999999776554 6999999876643
No 253
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=9.7e-11 Score=83.29 Aligned_cols=213 Identities=13% Similarity=0.168 Sum_probs=143.3
Q ss_pred eEEEeecCcceEEEEEeCCCCEEEEecC---CCeEEEEEccc--ceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-
Q 040370 12 AFRVIQDTHNVRSVSFHPSGDFLLAGTD---HPIAHLYDVNT--FQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK- 85 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~vw~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 85 (228)
..+...+.+.++-++|+|+++.|.++.. +|.|..|.++. |+....-+.... ..+...+++++++++++++..
T Consensus 32 ~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~--g~~p~yvsvd~~g~~vf~AnY~ 109 (346)
T COG2706 32 LLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLP--GSPPCYVSVDEDGRFVFVANYH 109 (346)
T ss_pred hhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccC--CCCCeEEEECCCCCEEEEEEcc
Confidence 3344467788899999999999988754 57788888775 453332222211 334488999999999988874
Q ss_pred CCeEEEEeCCC-CceeeEEecccccce----------eEEEEECCCCCEEEEeeCC-CeEEEEEccCCeeEEEEec-cee
Q 040370 86 DGAIRLWDGVS-ANCVRSIVGAHGTAE----------ATSANFTKDQRFVLSCGKD-STVKLWEVSSGRLVKQYLG-ATH 152 (228)
Q Consensus 86 dg~v~iwd~~~-~~~~~~~~~~~~~~~----------i~~~~~~~~~~~l~~~~~d-~~i~~wd~~~~~~~~~~~~-~~~ 152 (228)
.|.|.++-++. |..........+... +....+.|++++|++.+-. -.|.+|++..++....-.. -..
T Consensus 110 ~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~ 189 (346)
T COG2706 110 SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP 189 (346)
T ss_pred CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCC
Confidence 58899999865 433222111111222 7888999999999887632 3599999997765332211 123
Q ss_pred eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCc-ceeEEe------ecC--CCCCcEEEEeCCCCcEEEEecC-CCCEE
Q 040370 153 TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA-EKVAKW------SSN--HIGAPRWIEHSPAEAAFITCGT-DRSVR 222 (228)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~------~~~--~~~~v~~~~~~~~~~~l~s~~~-dg~i~ 222 (228)
.....-+.|+|++++..+...-+++|.+|..... ..+..+ +.. .......|..+|+|++|.++.. ...|.
T Consensus 190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 4455678999999999999999999999998773 222222 112 2345677899999999988753 23555
Q ss_pred Eeee
Q 040370 223 FWKE 226 (228)
Q Consensus 223 vwd~ 226 (228)
+|.+
T Consensus 270 ~f~V 273 (346)
T COG2706 270 VFSV 273 (346)
T ss_pred EEEE
Confidence 5543
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2.9e-11 Score=92.89 Aligned_cols=172 Identities=10% Similarity=0.013 Sum_probs=110.6
Q ss_pred eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC---CeEEEEeCCCCceeeEEecccccceeEEEEEC
Q 040370 42 IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD---GAIRLWDGVSANCVRSIVGAHGTAEATSANFT 118 (228)
Q Consensus 42 ~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (228)
.|.++|.+.+....... + ...+....|+|+|+.|+..+.+ ..|.+||+.+++....... ........|+
T Consensus 180 ~l~~~d~~g~~~~~l~~----~-~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~---~g~~~~~~~S 251 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQ----S-REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF---EGLNGAPAWS 251 (430)
T ss_pred EEEEECCCCCCceEEec----C-CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC---CCCcCCeEEC
Confidence 47777776544322211 1 5568889999999988776543 3699999988765432221 3344568999
Q ss_pred CCCCEEE-EeeCCC--eEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC--eEEEEEcCCcceeEEee
Q 040370 119 KDQRFVL-SCGKDS--TVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN--EIVIWDALTAEKVAKWS 193 (228)
Q Consensus 119 ~~~~~l~-~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~ 193 (228)
|||+.|+ +...++ .|++||+.+++... +.. +........|+|+++.++.++..++ .|+++|+.+++......
T Consensus 252 pDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~--~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~ 328 (430)
T PRK00178 252 PDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTN--HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF 328 (430)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCCeEE-ccc--CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 9999877 444444 68889998765433 322 2334456789999998877655443 57777887776433321
Q ss_pred cCCCCCcEEEEeCCCCcEEEEecCC-C--CEEEeee
Q 040370 194 SNHIGAPRWIEHSPAEAAFITCGTD-R--SVRFWKE 226 (228)
Q Consensus 194 ~~~~~~v~~~~~~~~~~~l~s~~~d-g--~i~vwd~ 226 (228)
.+ .......|+|+++.|+..+.+ + .|.+||+
T Consensus 329 ~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl 362 (430)
T PRK00178 329 VG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDL 362 (430)
T ss_pred CC--CCccceEECCCCCEEEEEEccCCceEEEEEEC
Confidence 12 233457899999998876643 3 3566664
No 255
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.9e-11 Score=93.27 Aligned_cols=181 Identities=14% Similarity=0.141 Sum_probs=111.6
Q ss_pred cCcceEEEEEeCCCCEEEEecC-----CCeEEEEEcccc---eEEeeeccceeeeccceeeEEeCCCCCeEEEEe-cCCe
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTD-----HPIAHLYDVNTF---QCYLSANVPEISVNGAINQVRYSSTGGMYVTAS-KDGA 88 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~-----d~~i~vw~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~ 88 (228)
..+.....+|+|||+.|+..+. +..+..|++..+ +....... . ........|+|||+.|+..+ .+|.
T Consensus 229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~---~-~~~~~~p~wSPDG~~Laf~s~~~g~ 304 (428)
T PRK01029 229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE---A-FGTQGNPSFSPDGTRLVFVSNKDGR 304 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecC---C-CCCcCCeEECCCCCEEEEEECCCCC
Confidence 3445567899999998886542 223444676653 21111111 1 22346789999999777655 4665
Q ss_pred EEEE--eCCC-CceeeEEecccccceeEEEEECCCCCEEEEeeCC---CeEEEEEccCCeeEEEEecceeeeeeeEEEEC
Q 040370 89 IRLW--DGVS-ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD---STVKLWEVSSGRLVKQYLGATHTQLRFQAVFN 162 (228)
Q Consensus 89 v~iw--d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (228)
..+| ++.. +.....+... ...+....|+|||+.|+..+.+ ..|.+||+.+++....... ........|+
T Consensus 305 ~~ly~~~~~~~g~~~~~lt~~--~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~---~~~~~~p~wS 379 (428)
T PRK01029 305 PRIYIMQIDPEGQSPRLLTKK--YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS---PENKESPSWA 379 (428)
T ss_pred ceEEEEECcccccceEEeccC--CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC---CCCccceEEC
Confidence 5555 4432 2223333332 3456778999999988876543 4699999988765433221 2234568899
Q ss_pred CCCcEEEEeeCC--CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCC
Q 040370 163 DTEEFVLSIDEP--SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAE 209 (228)
Q Consensus 163 ~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (228)
|+++.++.+... ...|.++|+..++..... ...+.+...+|+|-.
T Consensus 380 pDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt--~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 380 IDSLHLVYSAGNSNESELYLISLITKKTRKIV--IGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCCEEEee--cCCCcccCceecCCC
Confidence 999988765442 357888898777654433 344556778888743
No 256
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.47 E-value=3.6e-13 Score=106.52 Aligned_cols=131 Identities=12% Similarity=0.211 Sum_probs=107.6
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
+|++.. ......+.+|.+.|..+.|+-+|.++++.++|.++++|++++.+... .....|..++..++|.|. .+
T Consensus 159 vW~~~~--dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---~~~fgHsaRvw~~~~~~n--~i 231 (967)
T KOG0974|consen 159 VWKPHE--DNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---CTGFGHSARVWACCFLPN--RI 231 (967)
T ss_pred EEeccc--cCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---cccccccceeEEEEeccc--ee
Confidence 356552 22233778999999999999999999999999999999999987554 222334899999999988 89
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS 140 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 140 (228)
+|++.|.+.++|+.+ +..+..+..|. ...+..++..++....+|++.|+.+++||+..
T Consensus 232 ~t~gedctcrvW~~~-~~~l~~y~~h~-g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGVN-GTQLEVYDEHS-GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEeccceEEEEEecc-cceehhhhhhh-hcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 999999999999754 55555666654 77899999999999999999999999999754
No 257
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2e-10 Score=87.27 Aligned_cols=182 Identities=10% Similarity=0.089 Sum_probs=117.9
Q ss_pred cceEEEEEeCCCCE-EEEecC---CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEE-EecC--CeEEEE
Q 040370 20 HNVRSVSFHPSGDF-LLAGTD---HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVT-ASKD--GAIRLW 92 (228)
Q Consensus 20 ~~v~~~~~~~~~~~-l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d--g~v~iw 92 (228)
.......|+|+|+. ++..+. +..|.++|+.+++....... .+......|+|||+.++. .+.+ ..|.++
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~-----~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 262 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS-----QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLY 262 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC-----CCcEEeeEECCCCCEEEEEEccCCCcEEEEE
Confidence 36788999999985 554322 46799999988876544332 444566789999986654 3333 568888
Q ss_pred eCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-CC--eEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEE
Q 040370 93 DGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-DS--TVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVL 169 (228)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (228)
|+.+++.. .+... ........|+|||+.|+-.+. .+ .|++.|+.+++..+.... ... ...|+|++++++
T Consensus 263 dl~~g~~~-~LT~~--~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~---g~~--~~~~SPDG~~Ia 334 (419)
T PRK04043 263 DTNTKTLT-QITNY--PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH---GKN--NSSVSTYKNYIV 334 (419)
T ss_pred ECCCCcEE-EcccC--CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC---CCc--CceECCCCCEEE
Confidence 88777643 33332 222345679999987776653 23 688889887765333321 111 247999999988
Q ss_pred EeeCCC--------CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecC
Q 040370 170 SIDEPS--------NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGT 217 (228)
Q Consensus 170 ~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 217 (228)
.+.... ..|.+.|+.+++..... .. .......|+|||+.++-.+.
T Consensus 335 ~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT-~~--~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 335 YSSRETNNEFGKNTFNLYLISTNSDYIRRLT-AN--GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred EEEcCCCcccCCCCcEEEEEECCCCCeEECC-CC--CCcCCeEECCCCCEEEEEEc
Confidence 876543 37888898877653322 22 22335889999997766554
No 258
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=8.2e-10 Score=78.67 Aligned_cols=205 Identities=13% Similarity=0.158 Sum_probs=138.3
Q ss_pred cceEEEEEeCCCCEEEEecC-CCeEEEEEccc-ceEEeeeccceeeecc----------ceeeEEeCCCCCeEEEEec-C
Q 040370 20 HNVRSVSFHPSGDFLLAGTD-HPIAHLYDVNT-FQCYLSANVPEISVNG----------AINQVRYSSTGGMYVTASK-D 86 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~-d~~i~vw~~~~-~~~~~~~~~~~~~~~~----------~i~~~~~~~~~~~l~~~~~-d 86 (228)
.+-+-+++++++++++++.. .|.|.++-++. |......... .| .+ -+.+..+.|+++++++.+- -
T Consensus 89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~-~h-~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~ 166 (346)
T COG2706 89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVV-KH-TGSGPHERQESPHVHSANFTPDGRYLVVPDLGT 166 (346)
T ss_pred CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeee-ec-CCCCCCccccCCccceeeeCCCCCEEEEeecCC
Confidence 34488999999999988764 57899999865 3322211110 11 22 2889999999999998863 2
Q ss_pred CeEEEEeCCCCceeeEEecc-cccceeEEEEECCCCCEEEEee-CCCeEEEEEccCC-eeEEEEec-------ceeeeee
Q 040370 87 GAIRLWDGVSANCVRSIVGA-HGTAEATSANFTKDQRFVLSCG-KDSTVKLWEVSSG-RLVKQYLG-------ATHTQLR 156 (228)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~-~~~~~~~~-------~~~~~~~ 156 (228)
-.|.+|++..+.....-... ........|.|+|++++.+... -+++|-+|..... ..+..++. -......
T Consensus 167 Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~ 246 (346)
T COG2706 167 DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWA 246 (346)
T ss_pred ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCce
Confidence 46999999877543221110 1145568899999999877655 5889999998763 22222221 1134456
Q ss_pred eEEEECCCCcEEEEeeCCCCeEEEEEcCCcce-eE--EeecCCCCCcEEEEeCCCCcEEEEecCC-CCEEEeee
Q 040370 157 FQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK-VA--KWSSNHIGAPRWIEHSPAEAAFITCGTD-RSVRFWKE 226 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~i~vwd~ 226 (228)
..+..+++|+++.++......|.+|.+..... +. .....+....+...|+|.+++|++++.+ ..|.+|.+
T Consensus 247 aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 247 AAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred eEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence 77889999999999987777899987754322 21 1213444558899999999999998864 45777764
No 259
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.46 E-value=3.9e-10 Score=78.02 Aligned_cols=200 Identities=15% Similarity=0.141 Sum_probs=130.5
Q ss_pred EEEeCCCCEEEEecCCCeEEEEEcccc--eEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeE
Q 040370 25 VSFHPSGDFLLAGTDHPIAHLYDVNTF--QCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRS 102 (228)
Q Consensus 25 ~~~~~~~~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 102 (228)
++.+++|+.||+-. |..|.|-..++. ..+...+.+... ...=.-++|+||+..||.+...|+|+++|+.. ..+..
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~-~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDP-NPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFV 79 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCC-CchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEE
Confidence 56677888887654 677877766553 222333333322 34457899999999999999999999999864 33333
Q ss_pred Eeccc-----ccceeEEEEECCC------CCEEEEeeCCCeEEEEEccCC-----eeEEEEecce-eeeeeeEEEECCCC
Q 040370 103 IVGAH-----GTAEATSANFTKD------QRFVLSCGKDSTVKLWEVSSG-----RLVKQYLGAT-HTQLRFQAVFNDTE 165 (228)
Q Consensus 103 ~~~~~-----~~~~i~~~~~~~~------~~~l~~~~~d~~i~~wd~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~ 165 (228)
+.... -...|..+.|.+. ...|++-..+|.++-|-+..+ +....+.... .+..+..+.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 33221 1345666766652 225677778888888776432 2333333211 35678889999998
Q ss_pred cEEEEeeCCCC----------eEEEEEcCCcceeEEe----------------------------ecCCCCCcEEEEeCC
Q 040370 166 EFVLSIDEPSN----------EIVIWDALTAEKVAKW----------------------------SSNHIGAPRWIEHSP 207 (228)
Q Consensus 166 ~~~~~~~~~d~----------~i~i~d~~~~~~~~~~----------------------------~~~~~~~v~~~~~~~ 207 (228)
+.++++|.... .+..|.+-++.+.... .......|..+..||
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP 239 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP 239 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC
Confidence 88888776432 3556655333211110 012355788999999
Q ss_pred CCcEEEEecCCCCEEEeeec
Q 040370 208 AEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 208 ~~~~l~s~~~dg~i~vwd~~ 227 (228)
||..||+...+|.|.+|++.
T Consensus 240 dg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 240 DGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred CCCEEEEEEcCCeEEEEecC
Confidence 99999999999999999974
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=3.6e-11 Score=92.41 Aligned_cols=171 Identities=10% Similarity=0.065 Sum_probs=107.9
Q ss_pred eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-C--CeEEEEeCCCCceeeEEecccccceeEEEEEC
Q 040370 42 IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK-D--GAIRLWDGVSANCVRSIVGAHGTAEATSANFT 118 (228)
Q Consensus 42 ~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (228)
.|.++|........... . ...+....|+|+|+.|+..+. + ..|.+||+.+++....... ........|+
T Consensus 199 ~l~i~d~dG~~~~~l~~----~-~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~---~g~~~~~~wS 270 (448)
T PRK04792 199 QLMIADYDGYNEQMLLR----S-PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF---PGINGAPRFS 270 (448)
T ss_pred EEEEEeCCCCCceEeec----C-CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC---CCCcCCeeEC
Confidence 56667765543221111 1 557888999999998887654 3 2588999988765332221 2233468999
Q ss_pred CCCCEEEE-eeCCCe--EEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC--eEEEEEcCCcceeEEee
Q 040370 119 KDQRFVLS-CGKDST--VKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN--EIVIWDALTAEKVAKWS 193 (228)
Q Consensus 119 ~~~~~l~~-~~~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~ 193 (228)
||++.|+. .+.++. |+++|+.+++... +.. +........|+|+++.++.++..++ .|+++|+.+++......
T Consensus 271 PDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~--~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~ 347 (448)
T PRK04792 271 PDGKKLALVLSKDGQPEIYVVDIATKALTR-ITR--HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF 347 (448)
T ss_pred CCCCEEEEEEeCCCCeEEEEEECCCCCeEE-Ccc--CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec
Confidence 99998764 455664 8888988765433 322 2334466789999998887665444 56667777776443321
Q ss_pred cCCCCCcEEEEeCCCCcEEEEecC-CCCEEEee
Q 040370 194 SNHIGAPRWIEHSPAEAAFITCGT-DRSVRFWK 225 (228)
Q Consensus 194 ~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd 225 (228)
.+ .......|+|+|++|+..+. ++...||-
T Consensus 348 ~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~ 378 (448)
T PRK04792 348 EG--EQNLGGSITPDGRSMIMVNRTNGKFNIAR 378 (448)
T ss_pred CC--CCCcCeeECCCCCEEEEEEecCCceEEEE
Confidence 22 22345789999998877654 45455543
No 261
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=1.3e-13 Score=103.10 Aligned_cols=208 Identities=14% Similarity=0.204 Sum_probs=141.4
Q ss_pred eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce-EEe--eeccceeeeccceeeEEeCCCCCeEEEEecCC
Q 040370 11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ-CYL--SANVPEISVNGAINQVRYSSTGGMYVTASKDG 87 (228)
Q Consensus 11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~-~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 87 (228)
+...+.+|...|+.++--.+.+.+++++.|.+|++|.++... ... ..+.....|+.+|.++.|-.+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 455667999999999887788899999999999999987521 111 1111112338899999999888877764 78
Q ss_pred eEEEEeCCCCceeeEEecccccceeEEEEECC--CCCEEEEe-eCCCeEEEEEccCCeeEEEEecc---eeeeeeeEEEE
Q 040370 88 AIRLWDGVSANCVRSIVGAHGTAEATSANFTK--DQRFVLSC-GKDSTVKLWEVSSGRLVKQYLGA---THTQLRFQAVF 161 (228)
Q Consensus 88 ~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~---~~~~~~~~~~~ 161 (228)
-|++||.--++.+..+......+.+..+..-| +...++.| +...+|+++|.+..+....++.. .......+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999988777665443322222333333333 34444444 67889999999998877666532 23355677888
Q ss_pred CCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEE
Q 040370 162 NDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRF 223 (228)
Q Consensus 162 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v 223 (228)
.+.|+.++++-+ +|.|.+.|.++|+.+..+ ..-.-....++ .|..+.|+....|.++.+
T Consensus 885 a~~GN~lAa~LS-nGci~~LDaR~G~vINsw-rpmecdllqla-apsdq~L~~saldHslaV 943 (1034)
T KOG4190|consen 885 ADKGNKLAAALS-NGCIAILDARNGKVINSW-RPMECDLLQLA-APSDQALAQSALDHSLAV 943 (1034)
T ss_pred ccCcchhhHHhc-CCcEEEEecCCCceeccC-Ccccchhhhhc-CchhHHHHhhcccceeEe
Confidence 899999888766 699999999999988877 33222333333 245555665556666655
No 262
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.44 E-value=1.1e-12 Score=89.09 Aligned_cols=199 Identities=12% Similarity=0.140 Sum_probs=122.4
Q ss_pred eEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEE----------eCCCCCeEEEEecCCeEEE
Q 040370 22 VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVR----------YSSTGGMYVTASKDGAIRL 91 (228)
Q Consensus 22 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~----------~~~~~~~l~~~~~dg~v~i 91 (228)
++.+.+. ....|+++..++.+.....-.+.+......... .++..+++ .+-.++.++++..||.+.+
T Consensus 39 ~~~~~~v-~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~--i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v 115 (319)
T KOG4714|consen 39 LSKVSLS-AEYILFTGETSSQIISLGKGRGRCISLWERDDG--IDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAV 115 (319)
T ss_pred EEEeech-hhheeecccchhheeeeccceEEEechhhcccC--cCceeeeeccCCCCCcccccccCCceEecCCCceEEE
Confidence 5555554 344567777777666665544433222111100 11222222 2223567999999999999
Q ss_pred EeCCCCc-eeeEEecccccceeEEEEECCCCCEEEEeeC-----CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCC
Q 040370 92 WDGVSAN-CVRSIVGAHGTAEATSANFTKDQRFVLSCGK-----DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE 165 (228)
Q Consensus 92 wd~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (228)
++.+.-. ...++...+ ..-.+.+....++.+.++.. -+..+.|+++..+....-. .....+.+++-+|..
T Consensus 116 ~s~~~~~~~~~~i~~~~--~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~--~~~~~v~~l~~hp~q 191 (319)
T KOG4714|consen 116 FSTDKDLALMSRIPSIH--SGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK--KALDAVTALCSHPAQ 191 (319)
T ss_pred EechHHHhhhhhccccc--ccccccceeecccEEecCCcceEeeccceeeecccccccccccc--cccccchhhhCCccc
Confidence 9987521 111111111 01112222223444444321 1235566665433222111 123347888899999
Q ss_pred cEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeeec
Q 040370 166 EFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 166 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~ 227 (228)
..++++|++||.+.+||.++...+..+...|+.+++.+.|+| ++..|+++++||.+-.||..
T Consensus 192 q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 192 QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 999999999999999999999877777789999999999999 67899999999999999853
No 263
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.44 E-value=2.3e-12 Score=107.56 Aligned_cols=159 Identities=16% Similarity=0.240 Sum_probs=126.7
Q ss_pred ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeE
Q 040370 65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLV 144 (228)
Q Consensus 65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 144 (228)
-..|.++.=+|...+.+||+.||.+++|....++.+..+.... ...++.+.|+.+|+.+..+..||.+-+|... .++.
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g-~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~ 2285 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG-NSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPY 2285 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC-cchhhhhhhcccCCceeeeccCCceeecccC-Ccce
Confidence 4567888889988999999999999999999999888887765 4889999999999999999999999999986 4444
Q ss_pred EEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370 145 KQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224 (228)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 224 (228)
...+. |......+.|-.....-.-...+++.+.+||..-......+...|.+.++++++-|..++|++||.+|.|++|
T Consensus 2286 ~s~qc--hnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~ 2363 (2439)
T KOG1064|consen 2286 TSWQC--HNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLF 2363 (2439)
T ss_pred ecccc--CCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEe
Confidence 44444 5556666666552222222234578999999765444444446899999999999999999999999999999
Q ss_pred eec
Q 040370 225 KEI 227 (228)
Q Consensus 225 d~~ 227 (228)
|++
T Consensus 2364 D~r 2366 (2439)
T KOG1064|consen 2364 DIR 2366 (2439)
T ss_pred ehH
Confidence 975
No 264
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.41 E-value=6.3e-10 Score=93.27 Aligned_cols=205 Identities=11% Similarity=0.122 Sum_probs=131.4
Q ss_pred ceEEEEEeCCCCEEEEe-cCCCeEEEEEcccceEEeeeccc------ee------eeccceeeEEeCC-CCCeEEEEecC
Q 040370 21 NVRSVSFHPSGDFLLAG-TDHPIAHLYDVNTFQCYLSANVP------EI------SVNGAINQVRYSS-TGGMYVTASKD 86 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~------~~------~~~~~i~~~~~~~-~~~~l~~~~~d 86 (228)
....++++++++.|+++ ..++.|+++|+.++......... .+ ..-.....++++| ++..+++.+.+
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 35788999988766554 44578999998776532211100 00 0012346799999 56667777788
Q ss_pred CeEEEEeCCCCceeeEEecc-------------cccceeEEEEECCCCCEE-EEeeCCCeEEEEEccCCeeEEEEecc--
Q 040370 87 GAIRLWDGVSANCVRSIVGA-------------HGTAEATSANFTKDQRFV-LSCGKDSTVKLWEVSSGRLVKQYLGA-- 150 (228)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~-- 150 (228)
+.|++||..++.... +... ..-.....++++|+++.| ++-+.++.|++||+.++.......+.
T Consensus 705 ~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~ 783 (1057)
T PLN02919 705 HQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT 783 (1057)
T ss_pred CeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence 999999987765321 1110 001234679999998854 45556789999999876532111000
Q ss_pred -----------------eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec------------CCCCCcE
Q 040370 151 -----------------THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS------------NHIGAPR 201 (228)
Q Consensus 151 -----------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~------------~~~~~v~ 201 (228)
..-.....+++++++..++ +...++.|++||..++........ +......
T Consensus 784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYV-ADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~ 862 (1057)
T PLN02919 784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYV-ADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPA 862 (1057)
T ss_pred cCcccccccCCCCchhhhhccCCceeeEeCCCcEEE-EECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCce
Confidence 0011234677888887544 455579999999887655432211 1223578
Q ss_pred EEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 202 WIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 202 ~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.++++++|+++++-+.+++|++||+.
T Consensus 863 GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 863 GLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred EEEEeCCCCEEEEECCCCEEEEEECC
Confidence 89999999999999999999999963
No 265
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.40 E-value=9.7e-12 Score=87.77 Aligned_cols=205 Identities=19% Similarity=0.230 Sum_probs=139.0
Q ss_pred cCcceEEEEEeCCC--CEEEEecCCCeEEEEEcccceEEe---------------eeccc-----------------eee
Q 040370 18 DTHNVRSVSFHPSG--DFLLAGTDHPIAHLYDVNTFQCYL---------------SANVP-----------------EIS 63 (228)
Q Consensus 18 ~~~~v~~~~~~~~~--~~l~~~~~d~~i~vw~~~~~~~~~---------------~~~~~-----------------~~~ 63 (228)
-...|..+.|.+++ ..++..+.|.+|++|.+....... .++.+ ...
T Consensus 83 ieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNa 162 (433)
T KOG1354|consen 83 IEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANA 162 (433)
T ss_pred hhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecccc
Confidence 35678999998854 567788889999999875422111 00110 112
Q ss_pred eccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEec---c---cccceeEEEEECC-CCCEEEEeeCCCeEEEE
Q 040370 64 VNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVG---A---HGTAEATSANFTK-DQRFVLSCGKDSTVKLW 136 (228)
Q Consensus 64 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~---~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~w 136 (228)
|.--|+++.++.|+..++++ .|-.|.+|+++-......+.. + .-..-|++..|+| ..+.++-.+..|+|++-
T Consensus 163 HtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 163 HTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred ceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 35668999999999888876 478899999875433222211 1 1134678899999 56778888899999999
Q ss_pred EccCCeeEE----EEecce----------eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC-cceeEEeecCCC----
Q 040370 137 EVSSGRLVK----QYLGAT----------HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT-AEKVAKWSSNHI---- 197 (228)
Q Consensus 137 d~~~~~~~~----~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~---- 197 (228)
|+|...+.- .+..+. .-..+..+.|+++|+|+++-.. -+|++||+.. .+++.+. .-|.
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy--ltvk~wD~nme~~pv~t~-~vh~~lr~ 318 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY--LTVKLWDLNMEAKPVETY-PVHEYLRS 318 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc--ceeEEEeccccCCcceEE-eehHhHHH
Confidence 998533211 111100 1235678899999999998654 8999999954 4444444 3332
Q ss_pred --------CC---cEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 198 --------GA---PRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 198 --------~~---v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
.. -..++|+.++.+++||+..+.++++++
T Consensus 319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred HHHHHhhccchhheeEEEEcCCcceEecccccceEEEecC
Confidence 12 234789889999999999999999983
No 266
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.40 E-value=2.3e-11 Score=85.79 Aligned_cols=160 Identities=14% Similarity=0.246 Sum_probs=106.8
Q ss_pred EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC
Q 040370 15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG 94 (228)
Q Consensus 15 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~ 94 (228)
...|...+..+-|+-....+++.+.|..+.---.+.+..+..... ....+++.+.-. +...|...|.|.+-.+
T Consensus 110 ~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-----~~~~t~~~~d~~--~~fvGd~~gqvt~lr~ 182 (404)
T KOG1409|consen 110 YLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-----ETPASALQFDAL--YAFVGDHSGQITMLKL 182 (404)
T ss_pred hhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-----eccCCCCceeeE--EEEecccccceEEEEE
Confidence 346889999999998888999999988764444444443222221 111222222211 5566666777666655
Q ss_pred CC--CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370 95 VS--ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID 172 (228)
Q Consensus 95 ~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
.. -..+.++.++ ...+.+++|.|....|++|..|..+.+||+.-.+-. .+....+...+..+...+.-..+++.+
T Consensus 183 ~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-~~el~gh~~kV~~l~~~~~t~~l~S~~ 259 (404)
T KOG1409|consen 183 EQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-AYELQGHNDKVQALSYAQHTRQLISCG 259 (404)
T ss_pred eecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-eeeeccchhhhhhhhhhhhheeeeecc
Confidence 43 4556666665 889999999999999999999999999999654322 222223566666666666666777765
Q ss_pred CCCCeEEEEEcCC
Q 040370 173 EPSNEIVIWDALT 185 (228)
Q Consensus 173 ~~d~~i~i~d~~~ 185 (228)
. ||.|.+|+++.
T Consensus 260 e-dg~i~~w~mn~ 271 (404)
T KOG1409|consen 260 E-DGGIVVWNMNV 271 (404)
T ss_pred C-CCeEEEEeccc
Confidence 5 89999999843
No 267
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=3.4e-12 Score=90.06 Aligned_cols=163 Identities=13% Similarity=0.164 Sum_probs=125.1
Q ss_pred EEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC-----ceeeEEeccccc
Q 040370 35 LAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA-----NCVRSIVGAHGT 109 (228)
Q Consensus 35 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-----~~~~~~~~~~~~ 109 (228)
++.+.+..|-+-|++++.... +.. .+.|.++.|...+++++.|..+|.|...|++.+ .+...+. | .
T Consensus 228 fs~G~sqqv~L~nvetg~~qs-f~s-----ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h--~ 298 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS-FQS-----KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-H--D 298 (425)
T ss_pred ecccccceeEEEEeecccccc-ccc-----chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-c--C
Confidence 344456678899998876422 221 778999999988999999999999999999865 2333333 2 7
Q ss_pred ceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCee---EEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC
Q 040370 110 AEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRL---VKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT 185 (228)
Q Consensus 110 ~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 185 (228)
..|+++..-. ++++|++.+.+|+|++||++.-+. +.++++|........+...+....++++| +|...+||.++.
T Consensus 299 Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G-dDcytRiWsl~~ 377 (425)
T KOG2695|consen 299 SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG-DDCYTRIWSLDS 377 (425)
T ss_pred cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc-CeeEEEEEeccc
Confidence 7888888776 788999999999999999997666 88899887777777777888888888855 489999999999
Q ss_pred cceeEEeecCC---CCCcEEEEeCC
Q 040370 186 AEKVAKWSSNH---IGAPRWIEHSP 207 (228)
Q Consensus 186 ~~~~~~~~~~~---~~~v~~~~~~~ 207 (228)
+..+.+.+... ...+.+++|..
T Consensus 378 ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 378 GHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred CceeeccCCCCccccccccceehhc
Confidence 99888874322 22455566643
No 268
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.40 E-value=1.2e-11 Score=86.32 Aligned_cols=209 Identities=16% Similarity=0.236 Sum_probs=137.6
Q ss_pred cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce-EEe----eeccce--------eeeccceeeEEeCCCC--CeEEE
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ-CYL----SANVPE--------ISVNGAINQVRYSSTG--GMYVT 82 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~-~~~----~~~~~~--------~~~~~~i~~~~~~~~~--~~l~~ 82 (228)
....|+++.|...|.++++|...|.|.++.-+... +.. .++.+. ......|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45689999999999999999999999999766533 111 111111 0114568888887643 36777
Q ss_pred EecCCeEEEEeCCCCcee-----------------------------------------eEEecccccceeEEEEECCCC
Q 040370 83 ASKDGAIRLWDGVSANCV-----------------------------------------RSIVGAHGTAEATSANFTKDQ 121 (228)
Q Consensus 83 ~~~dg~v~iwd~~~~~~~-----------------------------------------~~~~~~~~~~~i~~~~~~~~~ 121 (228)
.+.|.+|++|.+...... ..+....|..-+.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 788999999986543100 001111236678899999998
Q ss_pred CEEEEeeCCCeEEEEEccCCeeEEE---Eecce---eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeE-----
Q 040370 122 RFVLSCGKDSTVKLWEVSSGRLVKQ---YLGAT---HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVA----- 190 (228)
Q Consensus 122 ~~l~~~~~d~~i~~wd~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~----- 190 (228)
+.++++ .|=.|.+|++.-...... ++.+. -...+.+..|+|....++.-++..|.|++-|+|......
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 888877 567899999875432222 22211 133467788898876655545556999999998543211
Q ss_pred -Ee---------ecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeecC
Q 040370 191 -KW---------SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL 228 (228)
Q Consensus 191 -~~---------~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~l 228 (228)
.. ..+-...|..+.|+++|+++++-+. -+|++||..|
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm 310 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNM 310 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccc
Confidence 11 1123456888999999999987654 5799999876
No 269
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.40 E-value=4e-10 Score=77.28 Aligned_cols=198 Identities=15% Similarity=0.096 Sum_probs=128.6
Q ss_pred EEEEeC-----CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeEEEEeCCCC
Q 040370 24 SVSFHP-----SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAIRLWDGVSA 97 (228)
Q Consensus 24 ~~~~~~-----~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~ 97 (228)
.+.|-| ...+||.|+..|...+|...+.+......- .+ ...|+-+.=..+ .-.+..++.|.++++.+++-+
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd--~s-nn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~ 148 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCD--VS-NNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGD 148 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeec--cc-ccchhhhhhhcccccceeeccCCcceeEEEEecC
Confidence 455655 456899999999999999987653322221 11 222221111111 224667888999999888755
Q ss_pred ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC-eeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370 98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG-RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN 176 (228)
Q Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 176 (228)
......... ...+.+++++++++++++.+....|..|.+... +.+.............+..|+.....+++ +.+||
T Consensus 149 s~~~~~h~~--~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv-~~Qdg 225 (344)
T KOG4532|consen 149 SNKFAVHNQ--NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAV-VFQDG 225 (344)
T ss_pred cccceeecc--ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEE-EecCC
Confidence 443333222 245889999999999999999999999998753 33333333334555677778877766666 55589
Q ss_pred eEEEEEcCCcceeEEe----ecCCCCCcEEEEeCCCCc--EEEEecCCCCEEEeeec
Q 040370 177 EIVIWDALTAEKVAKW----SSNHIGAPRWIEHSPAEA--AFITCGTDRSVRFWKEI 227 (228)
Q Consensus 177 ~i~i~d~~~~~~~~~~----~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~vwd~~ 227 (228)
.+.|||+|....+... ...|.+.+..+.|++.|. +|+..-.-+.+.+-|++
T Consensus 226 ~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 226 TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR 282 (344)
T ss_pred cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence 9999999986654433 246899999999998553 44444344556666653
No 270
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.39 E-value=5.2e-11 Score=84.07 Aligned_cols=201 Identities=12% Similarity=0.192 Sum_probs=145.7
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN 98 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 98 (228)
+.+++++.+.++...|++|-.+|++.-+.+...-...........|...+..+.|+.....+++.+.|..+.---.+.+.
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~ 147 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN 147 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence 57899999999999999999999998887754322222222223348899999999888899999999877655555555
Q ss_pred eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC--CeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370 99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS--GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN 176 (228)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 176 (228)
.+..... ....+++.+.-. +...|...|.|..-.+.. -.++.++.+ +...+.+..|.+....++++.+ |.
T Consensus 148 ~lg~Y~~---~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~--h~~~~~~l~Wd~~~~~LfSg~~-d~ 219 (404)
T KOG1409|consen 148 RLGGYNF---ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNG--HTGEVTCLKWDPGQRLLFSGAS-DH 219 (404)
T ss_pred cccceEe---eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcC--cccceEEEEEcCCCcEEEeccc-cC
Confidence 4433222 111122222211 566777777776665543 345555655 7888999999998888888666 79
Q ss_pred eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 177 EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 177 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.+.+||+--.+-......+|...|..+..-+--+.|++++.||.|.+|+..
T Consensus 220 ~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 220 SVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred ceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 999999976666655557999999999888888899999999999999963
No 271
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.38 E-value=3.2e-10 Score=93.46 Aligned_cols=197 Identities=11% Similarity=0.148 Sum_probs=137.2
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEE----EcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLY----DVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG 94 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~ 94 (228)
...|.++.|-++...++.+..+|.|.+. +......... +.....|.+++||||+..++....++++.+.+
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~V-----G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt- 148 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIV-----GSVDSGILAASWSPDEELLALVTGEGNLLLMT- 148 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEE-----EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-
Confidence 4679999999999999999999999999 4444332211 22277899999999999999999899888864
Q ss_pred CCCcee------------------------eEEeccc----------------------ccceeEEEEECCCCCEEEEee
Q 040370 95 VSANCV------------------------RSIVGAH----------------------GTAEATSANFTKDQRFVLSCG 128 (228)
Q Consensus 95 ~~~~~~------------------------~~~~~~~----------------------~~~~i~~~~~~~~~~~l~~~~ 128 (228)
++.+.+ ..|.+.. ....-..++|-.||+++|+.+
T Consensus 149 ~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss 228 (928)
T PF04762_consen 149 RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSS 228 (928)
T ss_pred ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEE
Confidence 111111 1110000 012345788999999999877
Q ss_pred C---C---CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC--CCeEEEEEcCCcceeEEeec---CCC
Q 040370 129 K---D---STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP--SNEIVIWDALTAEKVAKWSS---NHI 197 (228)
Q Consensus 129 ~---d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~---~~~ 197 (228)
- . +.+|||+- .|....+-+. ....-..++|.|.|..++++... ...|.+|. |+|-....+.. ...
T Consensus 229 ~~~~~~~~R~iRVy~R-eG~L~stSE~--v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~ 304 (928)
T PF04762_consen 229 VEPETGSRRVIRVYSR-EGELQSTSEP--VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEE 304 (928)
T ss_pred EEcCCCceeEEEEECC-CceEEecccc--CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCC
Confidence 4 2 57999995 4665544432 33445678999999999887642 34566777 56655554422 345
Q ss_pred CCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 198 GAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 198 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
..|..+.|++++..||..-.|. |.+|-.
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~ 332 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLEDR-VQLWTR 332 (928)
T ss_pred ceeeEEEECCCCCEEEEEecCC-ceEEEe
Confidence 6899999999999999977665 999954
No 272
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=2e-11 Score=94.11 Aligned_cols=121 Identities=12% Similarity=0.178 Sum_probs=97.9
Q ss_pred cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEE------------eeeccceeeeccceeeEEeCCCCCeEEEEec
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCY------------LSANVPEISVNGAINQVRYSSTGGMYVTASK 85 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 85 (228)
......|++|+.+..++|+|+.||.++|..+.+...- ..-+...+| ++.|.-+.|+.+.+.|-|...
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH-~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGH-NASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccC-cceEEEEEeccccccccccCC
Confidence 3467899999999999999999999999988653311 112233445 899999999999999999999
Q ss_pred CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEcc
Q 040370 86 DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVS 139 (228)
Q Consensus 86 dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~ 139 (228)
+|.|.+|-+-++.....+.....++.|.+++|+.+|..++....||.|.+=.++
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd 145 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD 145 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec
Confidence 999999999888766555555557889999999999999999999988776554
No 273
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.36 E-value=1e-11 Score=95.76 Aligned_cols=218 Identities=16% Similarity=0.262 Sum_probs=143.5
Q ss_pred CCcCCccccc-eeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC
Q 040370 1 FFDFSKATAK-RAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG 78 (228)
Q Consensus 1 iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 78 (228)
+|++...... -.+-+.+|...|+.+.|+| ....+++++-|-.+..||+.+.......... - ......++|+-...
T Consensus 95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~--w-~s~asqVkwnyk~p 171 (1081)
T KOG0309|consen 95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS--W-RSAASQVKWNYKDP 171 (1081)
T ss_pred hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec--c-cccCceeeecccCc
Confidence 4666654433 3445568999999999999 4568899999999999999886532211111 1 45667899987555
Q ss_pred eEEEEecCCeEEEEeCCCCc-eeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeee
Q 040370 79 MYVTASKDGAIRLWDGVSAN-CVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLR 156 (228)
Q Consensus 79 ~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 156 (228)
.+.+.+....|.+||.+.+. ++..++.+ ...++.++|+. .-..+.+++.|++|+.||............ .....+
T Consensus 172 ~vlasshg~~i~vwd~r~gs~pl~s~K~~--vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v-tt~~pi 248 (1081)
T KOG0309|consen 172 NVLASSHGNDIFVWDLRKGSTPLCSLKGH--VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV-TTNFPI 248 (1081)
T ss_pred chhhhccCCceEEEeccCCCcceEEeccc--ceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec-cccCcc
Confidence 56666677889999999875 44555553 77888888876 334688999999999999876433222111 123344
Q ss_pred eEEEECCCCcE--EEEeeCCCCeEEEEEc---------CCc-ceeEEeecCCCCCcEEEEeCCCC----------cEEEE
Q 040370 157 FQAVFNDTEEF--VLSIDEPSNEIVIWDA---------LTA-EKVAKWSSNHIGAPRWIEHSPAE----------AAFIT 214 (228)
Q Consensus 157 ~~~~~~~~~~~--~~~~~~~d~~i~i~d~---------~~~-~~~~~~~~~~~~~v~~~~~~~~~----------~~l~s 214 (228)
....+-|-+.- +.-.-+ +..+.+++. .++ +++..+ .+|...|....|-..+ -.|+|
T Consensus 249 w~~r~~Pfg~g~~~mp~~G-~n~v~~~~c~n~d~e~n~~~~~~pVh~F-~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVT 326 (1081)
T KOG0309|consen 249 WRGRYLPFGEGYCIMPMVG-GNMVPQLRCENSDLEWNVFDLNTPVHTF-VGHDDVVLEFLWRKRKECDGDYDSRDFQLVT 326 (1081)
T ss_pred eeccccccCceeEeccccC-CeeeeeccccchhhhhccccCCcceeee-cCcchHHHHHhhhhcccccCCCCccceeEEE
Confidence 45555554432 221112 234444433 332 355666 7999988777664422 27999
Q ss_pred ecCCCCEEEeee
Q 040370 215 CGTDRSVRFWKE 226 (228)
Q Consensus 215 ~~~dg~i~vwd~ 226 (228)
-+.|..+++|-+
T Consensus 327 WSkD~~lrlWpI 338 (1081)
T KOG0309|consen 327 WSKDQTLRLWPI 338 (1081)
T ss_pred eecCCceEeeec
Confidence 999999999975
No 274
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.35 E-value=1.1e-09 Score=80.88 Aligned_cols=175 Identities=10% Similarity=0.061 Sum_probs=130.6
Q ss_pred EeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC-eEEEEeCCCCceeeEEe
Q 040370 27 FHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG-AIRLWDGVSANCVRSIV 104 (228)
Q Consensus 27 ~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~ 104 (228)
|++ +|++++..+. |...|.+...+-.++.-. .+.|.-..+..+++-++.|..|| .+-|+|.++++..+...
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv~~------~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~ 399 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQVGK------KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK 399 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEEcCC------CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC
Confidence 444 6788887775 667777766655433222 56688888888888899999999 89999998877555544
Q ss_pred cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC---CCCeEEEE
Q 040370 105 GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE---PSNEIVIW 181 (228)
Q Consensus 105 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~i~ 181 (228)
. -+.|.++..+++|++++.+.....+.+.|+.+++....-+ .....+....|+|++++++-+-- --..|+++
T Consensus 400 ~---lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk--S~~~lItdf~~~~nsr~iAYafP~gy~tq~Ikly 474 (668)
T COG4946 400 D---LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK--SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLY 474 (668)
T ss_pred C---ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc--cccceeEEEEEcCCceeEEEecCcceeeeeEEEE
Confidence 3 5689999999999999999999999999999987543332 26778899999999999887533 12579999
Q ss_pred EcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEe
Q 040370 182 DALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITC 215 (228)
Q Consensus 182 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 215 (228)
|+.+++..... ...+.=.+-+|.|++++|.--
T Consensus 475 dm~~~Kiy~vT--T~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 475 DMDGGKIYDVT--TPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred ecCCCeEEEec--CCcccccCcccCCCCcEEEEE
Confidence 99888766554 222333456788999877643
No 275
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.34 E-value=4e-11 Score=86.10 Aligned_cols=160 Identities=13% Similarity=0.197 Sum_probs=106.2
Q ss_pred eEEEEEeCCCCEEEEecCCCeEEEEEcccceE----EeeeccceeeeccceeeEEeCCCCCeEEEE---ecCCeEEEEeC
Q 040370 22 VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQC----YLSANVPEISVNGAINQVRYSSTGGMYVTA---SKDGAIRLWDG 94 (228)
Q Consensus 22 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~dg~v~iwd~ 94 (228)
...+..+|+++++|++..+....+++...... ...... ...-+.+.|..+......+ +....+.+|..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-----~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-----PKRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-----ccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 44456678899999998888877777665332 111111 2233445554444444443 44455666665
Q ss_pred CCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC
Q 040370 95 VSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP 174 (228)
Q Consensus 95 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
..+... .+.+| -..+..++++||+++++++..|..|++-.......+..+-. .|...+..++.-++.. ++++++
T Consensus 140 ~~~~~~-~~lGh--vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl-GH~eFVS~isl~~~~~-LlS~sG- 213 (390)
T KOG3914|consen 140 DSGRCE-PILGH--VSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL-GHKEFVSTISLTDNYL-LLSGSG- 213 (390)
T ss_pred cccCcc-hhhhh--hhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc-ccHhheeeeeeccCce-eeecCC-
Confidence 553333 23343 77899999999999999999999999988776555555532 2677777777766544 555555
Q ss_pred CCeEEEEEcCCcceeEEe
Q 040370 175 SNEIVIWDALTAEKVAKW 192 (228)
Q Consensus 175 d~~i~i~d~~~~~~~~~~ 192 (228)
|+++++||+++|+.+.++
T Consensus 214 D~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTC 231 (390)
T ss_pred CCcEEEEecccCCccccc
Confidence 899999999999987655
No 276
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=3.5e-10 Score=84.66 Aligned_cols=150 Identities=15% Similarity=0.244 Sum_probs=109.9
Q ss_pred CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe--cCCeEEEEeCCCCceeeEEecccccceeEEEEEC
Q 040370 41 PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS--KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFT 118 (228)
Q Consensus 41 ~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (228)
.++++.+++.......+.. .++|+++.|+|+++.|+++. .--.+.|+|++ +..+..+. .++=+++-|+
T Consensus 251 q~Lyll~t~g~s~~V~L~k-----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~----egpRN~~~fn 320 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLLK-----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP----EGPRNTAFFN 320 (566)
T ss_pred ceEEEEEecCceEEEecCC-----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC----CCCccceEEC
Confidence 4678888774343333322 78999999999998777654 45679999975 66666554 4456789999
Q ss_pred CCCCEEEEeeCC---CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC-----CCeEEEEEcCCcceeE
Q 040370 119 KDQRFVLSCGKD---STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP-----SNEIVIWDALTAEKVA 190 (228)
Q Consensus 119 ~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~ 190 (228)
|.|++++.++-+ |.+-+||+.+.+++..+.. ...+.+.|+|+|++++++... |+.++||+. +|..+.
T Consensus 321 p~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a----~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~ 395 (566)
T KOG2315|consen 321 PHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLH 395 (566)
T ss_pred CCCCEEEEeecCCCCCceEEEeccchhhcccccc----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceee
Confidence 999999988865 6899999999888877753 334678899999999987654 789999997 566555
Q ss_pred EeecCCCCCcEEEEeCC
Q 040370 191 KWSSNHIGAPRWIEHSP 207 (228)
Q Consensus 191 ~~~~~~~~~v~~~~~~~ 207 (228)
.. ...+....+.|-|
T Consensus 396 ~~--~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 396 EK--MFKSELLQVEWRP 410 (566)
T ss_pred hh--hhhHhHhheeeee
Confidence 43 1222567777766
No 277
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=9.4e-12 Score=91.44 Aligned_cols=163 Identities=18% Similarity=0.230 Sum_probs=129.9
Q ss_pred eccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC--CCCEEEEeeCCCeEEEEEccC-
Q 040370 64 VNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK--DQRFVLSCGKDSTVKLWEVSS- 140 (228)
Q Consensus 64 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~wd~~~- 140 (228)
|.+.|+.+.|+..|..+++|+.|..|.+||...++....+...| ...|.-..|-| +...+++++.||.+++=.+..
T Consensus 141 H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH-~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t 219 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGH-CNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET 219 (559)
T ss_pred CCCccceeeecccCceeeccCccceEEeehhhccCccccccccc-ccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence 48899999999999999999999999999999998888777655 55666666877 446799999999999977654
Q ss_pred CeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee--cCCCC---CcEEEEeCCCC-cEEEE
Q 040370 141 GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS--SNHIG---APRWIEHSPAE-AAFIT 214 (228)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~---~v~~~~~~~~~-~~l~s 214 (228)
+....+.....|...+..++.-|+..+-+.+++.|+.+.-+|++.+.+...+. ..+.. ....++..|.. .++++
T Consensus 220 ~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faV 299 (559)
T KOG1334|consen 220 GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAV 299 (559)
T ss_pred cceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccccc
Confidence 33333444455788888999999999888888889999999999876644432 23444 57788999954 48999
Q ss_pred ecCCCCEEEeeec
Q 040370 215 CGTDRSVRFWKEI 227 (228)
Q Consensus 215 ~~~dg~i~vwd~~ 227 (228)
++.|..+++||.+
T Consensus 300 gG~dqf~RvYD~R 312 (559)
T KOG1334|consen 300 GGSDQFARVYDQR 312 (559)
T ss_pred CChhhhhhhhccc
Confidence 9999999999864
No 278
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.29 E-value=1.2e-10 Score=83.76 Aligned_cols=153 Identities=16% Similarity=0.242 Sum_probs=107.8
Q ss_pred ceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce----eeEEecccccceeEEEEECCCCCEEEEeeCC---CeEEEEEcc
Q 040370 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANC----VRSIVGAHGTAEATSANFTKDQRFVLSCGKD---STVKLWEVS 139 (228)
Q Consensus 67 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~~wd~~ 139 (228)
....+..+|.+++++.+..+....+++...... ...... ...-+++.|..+......+..- ..+.+|...
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v---~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV---PKRPTAISFIREDTSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec---ccCcceeeeeeccceEEEEeecCCceeeeeeccc
Confidence 345566788899999888888877777664432 222222 2233445555544444444444 445555544
Q ss_pred CCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCC
Q 040370 140 SGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDR 219 (228)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 219 (228)
.+..... .+ |-..+..++++|++++++++.. |..|++-.......+..+..+|..-|..++.-++ ..|+++|.|+
T Consensus 141 ~~~~~~~-lG--hvSml~dVavS~D~~~IitaDR-DEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~ 215 (390)
T KOG3914|consen 141 SGRCEPI-LG--HVSMLLDVAVSPDDQFIITADR-DEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDK 215 (390)
T ss_pred ccCcchh-hh--hhhhhheeeecCCCCEEEEecC-CceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCC
Confidence 4333322 23 7788999999999999998665 8999999988888888887899999999999765 4599999999
Q ss_pred CEEEeeec
Q 040370 220 SVRFWKEI 227 (228)
Q Consensus 220 ~i~vwd~~ 227 (228)
++++||+.
T Consensus 216 tlr~Wd~~ 223 (390)
T KOG3914|consen 216 TLRLWDIT 223 (390)
T ss_pred cEEEEecc
Confidence 99999974
No 279
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.29 E-value=3.3e-11 Score=93.12 Aligned_cols=211 Identities=16% Similarity=0.252 Sum_probs=148.3
Q ss_pred ccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce-EEeeeccceeeeccceeeEEeCCCC--CeEEEEe
Q 040370 8 TAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ-CYLSANVPEISVNGAINQVRYSSTG--GMYVTAS 84 (228)
Q Consensus 8 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~ 84 (228)
+..+.+.+ .-..++.++..+|.|+-+|.++.-|. .+.|+...- +..-+.... .-.|-.+.|+|.. .+-++..
T Consensus 14 tf~kslsl-~v~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~t---pw~vad~qws~h~a~~~wiVst 88 (1081)
T KOG0309|consen 14 TFGKSLSL-KVDGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHIT---PWQVADVQWSPHPAKPYWIVST 88 (1081)
T ss_pred ccCceeEE-EecCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccC---cchhcceecccCCCCceeEEec
Confidence 33344443 34678899999999999999998774 577776532 111111100 2346677888753 3444444
Q ss_pred cCCeEEEEeCCCC-ceeeEEecccccceeEEEEECCC-CCEEEEeeCCCeEEEEEccCCeeE-EEEecceeeeeeeEEEE
Q 040370 85 KDGAIRLWDGVSA-NCVRSIVGAHGTAEATSANFTKD-QRFVLSCGKDSTVKLWEVSSGRLV-KQYLGATHTQLRFQAVF 161 (228)
Q Consensus 85 ~dg~v~iwd~~~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~ 161 (228)
....-.+|++... .....+..|.+...++.+.|+|. ...+++++.|-.+..||+++.... ..+.. -......+.|
T Consensus 89 s~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~--w~s~asqVkw 166 (1081)
T KOG0309|consen 89 SNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS--WRSAASQVKW 166 (1081)
T ss_pred CcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec--ccccCceeee
Confidence 5566778987643 33445556666899999999994 467899999999999999986543 33322 3344567788
Q ss_pred CCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeee
Q 040370 162 NDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 162 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~ 226 (228)
+-....++++.. .+.|++||.+.|..+.....+|...|+.++|.. ....+.+++.||+|++||-
T Consensus 167 nyk~p~vlassh-g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y 231 (1081)
T KOG0309|consen 167 NYKDPNVLASSH-GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDY 231 (1081)
T ss_pred cccCcchhhhcc-CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecc
Confidence 877777777555 488999999998877666688999999999976 4557899999999999984
No 280
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.29 E-value=2.3e-10 Score=90.33 Aligned_cols=183 Identities=15% Similarity=0.172 Sum_probs=129.6
Q ss_pred CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEeccccc
Q 040370 30 SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGT 109 (228)
Q Consensus 30 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 109 (228)
++..++.|+-...+..+|+.+.+........ .+.|.-++. +++.+++|...|+|.+-|.++.+.+.++..| .
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~----a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aH--s 217 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVS----ASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAH--S 217 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeecc----CCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeecc--c
Confidence 3455666666667778888887765544432 334555555 5789999999999999999999999999987 6
Q ss_pred ceeEEEEECCCCCEEEEeeC---------CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEE
Q 040370 110 AEATSANFTKDQRFVLSCGK---------DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI 180 (228)
Q Consensus 110 ~~i~~~~~~~~~~~l~~~~~---------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i 180 (228)
+.+..+.. .|+.|++++. |.-|+|||+|..+.+.-+.-+..+ .-+.|.|.-...++..+..|...+
T Consensus 218 ~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P---~flrf~Psl~t~~~V~S~sGq~q~ 292 (1118)
T KOG1275|consen 218 GSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP---QFLRFHPSLTTRLAVTSQSGQFQF 292 (1118)
T ss_pred cceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc---hhhhhcccccceEEEEecccceee
Confidence 67766544 5889999884 567899999988776555432222 345666765444443444599999
Q ss_pred EE---cCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 181 WD---ALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 181 ~d---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
-| +.+...-..........+.++.++++++.++.|..+|.|.+|.
T Consensus 293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 98 3333222222233445599999999999999999999999995
No 281
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=1e-11 Score=87.63 Aligned_cols=132 Identities=15% Similarity=0.263 Sum_probs=103.9
Q ss_pred cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCeEEEEecCCeEEEEeCCC
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGMYVTASKDGAIRLWDGVS 96 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~ 96 (228)
..+.|.++.|...++++..|+.+|.|..+|++....-.........|.+.|+++..-. ++++|.+.+.+|.|++||++.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 4678899999988999999999999999999875321122222333488899988776 788999999999999999987
Q ss_pred Cce---eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEec
Q 040370 97 ANC---VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLG 149 (228)
Q Consensus 97 ~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 149 (228)
-+. +....+|.+...-.-+...+....++++++|-..++|.++.+..+.++.-
T Consensus 331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 666 77777775444444455677778899999999999999999998887753
No 282
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.27 E-value=1.7e-08 Score=71.94 Aligned_cols=183 Identities=11% Similarity=0.128 Sum_probs=124.7
Q ss_pred EEEeCCCCEEEEec-----CCCeEEEEEcc-cceEEeeeccceeeeccceeeEEeCCCCCeEEEEe--------------
Q 040370 25 VSFHPSGDFLLAGT-----DHPIAHLYDVN-TFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS-------------- 84 (228)
Q Consensus 25 ~~~~~~~~~l~~~~-----~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------------- 84 (228)
-.|+|||++|++.- ..|.|-|||.. ..+.+..+... .-....+.+.|+|+.|+.+.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~----GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL 131 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSH----GIGPHELLLMPDGETLVVANGGIETHPDSGRAKL 131 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCC----CcChhhEEEcCCCCEEEEEcCCCccCcccCceec
Confidence 57999999999864 35899999999 44444444332 33456788999998777763
Q ss_pred ----cCCeEEEEeCCCCceeeEEec--ccccceeEEEEECCCCCEEEEeeCCC-------eEEEEEccCCeeEEEEecc-
Q 040370 85 ----KDGAIRLWDGVSANCVRSIVG--AHGTAEATSANFTKDQRFVLSCGKDS-------TVKLWEVSSGRLVKQYLGA- 150 (228)
Q Consensus 85 ----~dg~v~iwd~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~-------~i~~wd~~~~~~~~~~~~~- 150 (228)
.+-++...|..+|+.+.+... ..+..++..+++.++|..++..-..| -+.+++. ++.+..+...
T Consensus 132 Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~ 209 (305)
T PF07433_consen 132 NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPE 209 (305)
T ss_pred ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCCh
Confidence 234466667788887776544 34477899999999987655543333 2334433 3323333221
Q ss_pred ----eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecC
Q 040370 151 ----THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGT 217 (228)
Q Consensus 151 ----~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 217 (228)
.-..++-++++++++..+++++-..+.+.+||..+++.+... ....+..++-.+++ +++|.+.
T Consensus 210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~---~l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV---PLPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc---ccCceeeeeecCCc-eEEeCCC
Confidence 134677889999999999998888899999999999988765 23456677776666 6666554
No 283
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.27 E-value=1e-07 Score=67.80 Aligned_cols=190 Identities=10% Similarity=0.049 Sum_probs=126.0
Q ss_pred EEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeC-CCCCeEEEEecCCeEEEEeCCCCceee
Q 040370 24 SVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYS-STGGMYVTASKDGAIRLWDGVSANCVR 101 (228)
Q Consensus 24 ~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~v~iwd~~~~~~~~ 101 (228)
++.|.+ ++.++++-...+.|..|+..+++... .. ......+++. +++ .++.+..++ +.++|+.+++...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~------~~~~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-ID------LPGPNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTV 74 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EE------SSSEEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Ee------cCCCceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEE
Confidence 578888 67777777788999999998876543 11 1225667777 565 455555544 5555988886544
Q ss_pred EEec--c-cccceeEEEEECCCCCEEEEeeCC--------CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370 102 SIVG--A-HGTAEATSANFTKDQRFVLSCGKD--------STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS 170 (228)
Q Consensus 102 ~~~~--~-~~~~~i~~~~~~~~~~~l~~~~~d--------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
.... . ......+.+++.|+|+..++.... |.|..++.. ++...... .-.....++|+|+++.+++
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~---~~~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD---GLGFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE---EESSEEEEEEETTSSEEEE
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec---CcccccceEECCcchheee
Confidence 4433 1 135678899999999977766543 557777776 44433332 3444568999999999888
Q ss_pred eeCCCCeEEEEEcCCcce----eEEee--cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 171 IDEPSNEIVIWDALTAEK----VAKWS--SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 171 ~~~~d~~i~i~d~~~~~~----~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
+.+..+.|..+++..... ...+. ....+....+++..+|++.++.-..+.|.+++.
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence 887789999999864322 11121 122234788999999998888777888888874
No 284
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.23 E-value=1.5e-07 Score=67.06 Aligned_cols=185 Identities=14% Similarity=0.166 Sum_probs=116.6
Q ss_pred eEEEEEe-CCCCEEEEecCCCeEEEEEcccceEEeeeccc-eeeeccceeeEEeCCCCCeEEEEecC--------CeEEE
Q 040370 22 VRSVSFH-PSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP-EISVNGAINQVRYSSTGGMYVTASKD--------GAIRL 91 (228)
Q Consensus 22 v~~~~~~-~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~v~i 91 (228)
...+++. +++ .|+.+...+ +.++|..+++........ ........+.+++.|+|++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 6777787 565 455555544 456699888654444432 11125678999999999977776543 56777
Q ss_pred EeCCCCceeeEEecccccceeEEEEECCCCCEEE-EeeCCCeEEEEEccCCee----EEEEe-cceeeeeeeEEEECCCC
Q 040370 92 WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVL-SCGKDSTVKLWEVSSGRL----VKQYL-GATHTQLRFQAVFNDTE 165 (228)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~ 165 (228)
++.. ++....... -...+.++|+|+++.|+ +-+..+.|..+++..... ...+. ........-.+++..++
T Consensus 120 ~~~~-~~~~~~~~~---~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G 195 (246)
T PF08450_consen 120 IDPD-GKVTVVADG---LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG 195 (246)
T ss_dssp EETT-SEEEEEEEE---ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred ECCC-CeEEEEecC---cccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence 7776 554433333 34568999999998765 566778899999864221 12221 11112235678888888
Q ss_pred cEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEe-CCCCcE-EEEe
Q 040370 166 EFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEH-SPAEAA-FITC 215 (228)
Q Consensus 166 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~-l~s~ 215 (228)
...++.-. .+.|.++|.. |+.+..+... ...+++++| -++.+. ++|.
T Consensus 196 ~l~va~~~-~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 196 NLWVADWG-GGRIVVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -EEEEEET-TTEEEEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred CEEEEEcC-CCEEEEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence 87666554 5999999976 8888777544 458999999 455444 4443
No 285
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.22 E-value=4.3e-08 Score=82.61 Aligned_cols=201 Identities=11% Similarity=0.123 Sum_probs=130.6
Q ss_pred EEEEEeCC-CCEEEEecCCCeEEEEEcccceEEeeecc-ce-e--------eeccceeeEEeCCCCCeEEEEe-cCCeEE
Q 040370 23 RSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQCYLSANV-PE-I--------SVNGAINQVRYSSTGGMYVTAS-KDGAIR 90 (228)
Q Consensus 23 ~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~-~--------~~~~~i~~~~~~~~~~~l~~~~-~dg~v~ 90 (228)
..+++++. +..+++-+.++.|+++|..... ...... .. + ..-.....+++.++++.|+.+. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788874 5667777788999999986543 222211 00 0 0012357899999888666554 457799
Q ss_pred EEeCCCCceeeEEeccc-------c--------cceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecce---
Q 040370 91 LWDGVSANCVRSIVGAH-------G--------TAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT--- 151 (228)
Q Consensus 91 iwd~~~~~~~~~~~~~~-------~--------~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--- 151 (228)
++|..++. +..+.... . -.....++++| ++..+++.+.++.|++||..++... .+.+..
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 99987654 33332100 0 01235789999 5666677778899999999876542 221110
Q ss_pred ----------eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee-----------cC---------CCCCcE
Q 040370 152 ----------HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS-----------SN---------HIGAPR 201 (228)
Q Consensus 152 ----------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-----------~~---------~~~~v~ 201 (228)
.......++++|++..++++...++.|++||+.++....... .+ ......
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 112345688999999888888878999999998765321110 00 112346
Q ss_pred EEEeCCCCcEEEEecCCCCEEEeee
Q 040370 202 WIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 202 ~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
.++++++|+++++-..+++|++||.
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~ 832 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDP 832 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEEC
Confidence 8999999999999999999999986
No 286
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.20 E-value=5e-08 Score=71.81 Aligned_cols=103 Identities=15% Similarity=0.073 Sum_probs=80.5
Q ss_pred CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec----------CCeEEEEeCCCCceeeEEecccc--
Q 040370 41 PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK----------DGAIRLWDGVSANCVRSIVGAHG-- 108 (228)
Q Consensus 41 ~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~v~iwd~~~~~~~~~~~~~~~-- 108 (228)
+.|.+.|..+++.+....... .-..+ ++|+++.++.+.. +..|.+||..+.+.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~-----~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~ 100 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGF-----LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR 100 (352)
T ss_pred ceEEEEECCCCEEEEEEEccC-----CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch
Confidence 899999999998877766532 22334 9999998877665 78999999999999988875321
Q ss_pred ---cceeEEEEECCCCCEEEEee-C-CCeEEEEEccCCeeEEEEec
Q 040370 109 ---TAEATSANFTKDQRFVLSCG-K-DSTVKLWEVSSGRLVKQYLG 149 (228)
Q Consensus 109 ---~~~i~~~~~~~~~~~l~~~~-~-d~~i~~wd~~~~~~~~~~~~ 149 (228)
......++++|||++|+... . +..|.+.|+.+++.+..+..
T Consensus 101 ~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 101 FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred hhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 12234788999999988766 3 68999999999999888764
No 287
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=2.9e-11 Score=90.83 Aligned_cols=161 Identities=16% Similarity=0.222 Sum_probs=117.0
Q ss_pred ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC-----ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEcc
Q 040370 65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA-----NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVS 139 (228)
Q Consensus 65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~ 139 (228)
...|..++--.+.+-+++++.|.+|++|.++.. .....+....|+.+|.++.|-.+.++++++ ||.|.+||.-
T Consensus 735 ~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPF 812 (1034)
T KOG4190|consen 735 QEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPF 812 (1034)
T ss_pred HHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeeccc
Confidence 677777776667788999999999999998742 112223333348899999999998888776 7889999988
Q ss_pred CCeeEEEEecceeeeeeeEEEECC--CCcEEEEeeCCCCeEEEEEcCCcceeEEee----cCCCCCcEEEEeCCCCcEEE
Q 040370 140 SGRLVKQYLGATHTQLRFQAVFND--TEEFVLSIDEPSNEIVIWDALTAEKVAKWS----SNHIGAPRWIEHSPAEAAFI 213 (228)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~ 213 (228)
-++++..+...........+..-+ +...++++++...+++++|.+..+-...+. .+.+.-+.+++..+.|+.++
T Consensus 813 igr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lA 892 (1034)
T KOG4190|consen 813 IGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLA 892 (1034)
T ss_pred ccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhh
Confidence 777766554333333333333323 455666666777999999999988766653 23446688999999999999
Q ss_pred EecCCCCEEEeeec
Q 040370 214 TCGTDRSVRFWKEI 227 (228)
Q Consensus 214 s~~~dg~i~vwd~~ 227 (228)
.+-.+|+|.+-|.+
T Consensus 893 a~LSnGci~~LDaR 906 (1034)
T KOG4190|consen 893 AALSNGCIAILDAR 906 (1034)
T ss_pred HHhcCCcEEEEecC
Confidence 99899998887754
No 288
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.18 E-value=2.9e-08 Score=82.26 Aligned_cols=201 Identities=10% Similarity=0.167 Sum_probs=130.0
Q ss_pred cCcceEEEEEeCCCCEEEEecC------CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec---CCe
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTD------HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK---DGA 88 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~------d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~ 88 (228)
+...-..++|-.||+++|+.+- -..++||+-+ |......... .+--.+++|.|.|+++|+... ...
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v----~gLe~~l~WrPsG~lIA~~q~~~~~~~ 282 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV----DGLEGALSWRPSGNLIASSQRLPDRHD 282 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC----CCccCCccCCCCCCEEEEEEEcCCCcE
Confidence 4456778999999999998763 2589999976 5543332211 333457899999999888764 345
Q ss_pred EEEEeCCCCceeeEEecc--cccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeE--EEEecceeeeeeeEEEECCC
Q 040370 89 IRLWDGVSANCVRSIVGA--HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLV--KQYLGATHTQLRFQAVFNDT 164 (228)
Q Consensus 89 v~iwd~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 164 (228)
|.+|. ++|-....+... .....|..+.|++++..|+....|. |.+|-..+-..- +.+... .......+.|+|.
T Consensus 283 VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~-~~~~~~~~~Wdpe 359 (928)
T PF04762_consen 283 VVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFS-SSESVNFVKWDPE 359 (928)
T ss_pred EEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEcc-CCCCCCceEECCC
Confidence 77777 556555555443 2366889999999999999987665 999988775432 222211 1222334778886
Q ss_pred CcEEEEeeCCCCeEEEEEc----CCc----------------ceeE--------------EeecCCCCCcEEEEeCCCCc
Q 040370 165 EEFVLSIDEPSNEIVIWDA----LTA----------------EKVA--------------KWSSNHIGAPRWIEHSPAEA 210 (228)
Q Consensus 165 ~~~~~~~~~~d~~i~i~d~----~~~----------------~~~~--------------~~~~~~~~~v~~~~~~~~~~ 210 (228)
..+-+.....+|.+..++. ..+ ..+. ...-....+|.+++|++++.
T Consensus 360 ~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~ 439 (928)
T PF04762_consen 360 KPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNS 439 (928)
T ss_pred CCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCC
Confidence 6553333332355544432 111 0000 00113467899999999988
Q ss_pred EEEEecCCCCEEEeee
Q 040370 211 AFITCGTDRSVRFWKE 226 (228)
Q Consensus 211 ~l~s~~~dg~i~vwd~ 226 (228)
.+++-..||.+.+|..
T Consensus 440 ~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 440 RFAVLTSDGSLSIYEW 455 (928)
T ss_pred eEEEEECCCCEEEEEe
Confidence 8999999999999984
No 289
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.18 E-value=1.4e-08 Score=69.91 Aligned_cols=180 Identities=9% Similarity=-0.016 Sum_probs=122.1
Q ss_pred EEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC-ceeeEEecccccce
Q 040370 33 FLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA-NCVRSIVGAHGTAE 111 (228)
Q Consensus 33 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~ 111 (228)
.+..++.|.++++.+++.+........+ .-.+.++.++++++++++.+....|..|.+... +.+..+........
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~----~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~ 205 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQ----NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDH 205 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeecc----ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCC
Confidence 3556777888888887765432222211 123788999999999999999999999988753 33333233323445
Q ss_pred eEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEE---ecceeeeeeeEEEECCCCc--EEEEeeCCCCeEEEEEcCCc
Q 040370 112 ATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQY---LGATHTQLRFQAVFNDTEE--FVLSIDEPSNEIVIWDALTA 186 (228)
Q Consensus 112 i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~i~d~~~~ 186 (228)
-.+..|+.....+|++..||++.|||++....+... ..+.|.+.+..+.|++.|. .++.+-. -+.+.+-|+|++
T Consensus 206 gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh-fs~~hv~D~R~~ 284 (344)
T KOG4532|consen 206 GFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH-FSRVHVVDTRNY 284 (344)
T ss_pred ceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecC-cceEEEEEcccC
Confidence 577889999999999999999999999976544332 2233777888889997663 3444443 489999999998
Q ss_pred ceeEEee------cCCCCC-cEEEEeCCCCcEEEEecC
Q 040370 187 EKVAKWS------SNHIGA-PRWIEHSPAEAAFITCGT 217 (228)
Q Consensus 187 ~~~~~~~------~~~~~~-v~~~~~~~~~~~l~s~~~ 217 (228)
.....+. ..|... +..-.|+.++.-+.+..+
T Consensus 285 ~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 285 VNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred ceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 7655542 123333 667777776655554443
No 290
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=5.7e-09 Score=78.51 Aligned_cols=216 Identities=15% Similarity=0.207 Sum_probs=133.4
Q ss_pred CCcCCccccceeEEEeecCcceE-EEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVR-SVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM 79 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 79 (228)
|||+.++..++.+..+.....+. -..||.|++++|.-..+ .|.||+..+...+...... ...|....|+|.++.
T Consensus 286 IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslk----i~gIr~FswsP~~~l 360 (698)
T KOG2314|consen 286 IWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLK----ISGIRDFSWSPTSNL 360 (698)
T ss_pred EEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccC----CccccCcccCCCcce
Confidence 69999888888777764444433 46899999999977664 6889998775443322221 456777888888776
Q ss_pred EEEEecC-----CeEEEEeCCCCceeeEE-------------------------------------------ec------
Q 040370 80 YVTASKD-----GAIRLWDGVSANCVRSI-------------------------------------------VG------ 105 (228)
Q Consensus 80 l~~~~~d-----g~v~iwd~~~~~~~~~~-------------------------------------------~~------ 105 (228)
||--... ..+.+-.+.+++.++.. ..
T Consensus 361 lAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve 440 (698)
T KOG2314|consen 361 LAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE 440 (698)
T ss_pred EEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce
Confidence 6543211 11222211111111100 00
Q ss_pred -ccccceeEEEEECCCCCEEEEeeC---CCeEEEEEccC-Ce---eEEEEecceeeeeeeEEEECCCCcEEEEeeC--CC
Q 040370 106 -AHGTAEATSANFTKDQRFVLSCGK---DSTVKLWEVSS-GR---LVKQYLGATHTQLRFQAVFNDTEEFVLSIDE--PS 175 (228)
Q Consensus 106 -~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~~wd~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d 175 (228)
-.-...|...+|.|.|+.+++-+. ..++.+|.+++ .. .+..+ .......+.|+|.|+++++++- ..
T Consensus 441 ~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~----dk~~~N~vfwsPkG~fvvva~l~s~~ 516 (698)
T KOG2314|consen 441 VVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL----DKKFANTVFWSPKGRFVVVAALVSRR 516 (698)
T ss_pred eeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh----cccccceEEEcCCCcEEEEEEecccc
Confidence 001446778899999987776543 34688898873 22 22222 2345678899999999887643 36
Q ss_pred CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecC------CCCEEEeee
Q 040370 176 NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGT------DRSVRFWKE 226 (228)
Q Consensus 176 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------dg~i~vwd~ 226 (228)
|.+.++|+........-...| ...+.+.|.|.|+|++|++. |..-++|+.
T Consensus 517 g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tf 572 (698)
T KOG2314|consen 517 GDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTF 572 (698)
T ss_pred cceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhccccceEEEEe
Confidence 899999987533333322233 34678999999999999986 344555553
No 291
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=7.1e-09 Score=81.07 Aligned_cols=143 Identities=12% Similarity=0.181 Sum_probs=103.9
Q ss_pred CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-----CCeEEEEecCCeEEEEeCCCCceeeEEe
Q 040370 30 SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-----GGMYVTASKDGAIRLWDGVSANCVRSIV 104 (228)
Q Consensus 30 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 104 (228)
+|.++++|+.||.|.|-.+.+.+....... ..++.+++++|+ .+.+++|+.-| +.++.-+-........
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df-----~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~ 155 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDF-----KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVV 155 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEec-----CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcccee
Confidence 499999999999999999988776554443 678999999997 56899999988 7777643222222223
Q ss_pred cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce----eeeeeeEEEECCCCcEEEEeeCCCCeEEE
Q 040370 105 GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT----HTQLRFQAVFNDTEEFVLSIDEPSNEIVI 180 (228)
Q Consensus 105 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~i~i 180 (228)
.+...++|.++.|. |+++|-++.+| |++||+.+.+.+..++.+. .......+.|.++.+.++.-+ .+|++
T Consensus 156 l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~---d~v~i 229 (846)
T KOG2066|consen 156 LSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWG---DSVKI 229 (846)
T ss_pred eecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecC---CeEEE
Confidence 44458899999997 78888888777 9999999888777665432 223345567777666555432 57888
Q ss_pred EEcC
Q 040370 181 WDAL 184 (228)
Q Consensus 181 ~d~~ 184 (228)
..++
T Consensus 230 ~~I~ 233 (846)
T KOG2066|consen 230 CSIK 233 (846)
T ss_pred EEEe
Confidence 8777
No 292
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.17 E-value=4.4e-08 Score=73.04 Aligned_cols=192 Identities=14% Similarity=0.162 Sum_probs=132.3
Q ss_pred cceEEEEEeCC--CCEEEE-----ecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe--------
Q 040370 20 HNVRSVSFHPS--GDFLLA-----GTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS-------- 84 (228)
Q Consensus 20 ~~v~~~~~~~~--~~~l~~-----~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------- 84 (228)
..|....|+|. +..||. .+..+++++|.+..+..+....... ..=..+.|++.|++++.--
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk----~~~~qLkW~~~g~~ll~l~~t~~ksnK 249 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK----VSGVQLKWQVLGKYLLVLVMTHTKSNK 249 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe----ecccEEEEecCCceEEEEEEEeeeccc
Confidence 56888889995 344553 5678899999998776655544432 2234578999888765321
Q ss_pred ---cCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEe--eCCCeEEEEEccCCeeEEEEecceeeeeeeEE
Q 040370 85 ---KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC--GKDSTVKLWEVSSGRLVKQYLGATHTQLRFQA 159 (228)
Q Consensus 85 ---~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
....+.+++++........ .. .++|...+|.|.++.+++. -.+..+.++|++.. ....+ .......+
T Consensus 250 syfgesnLyl~~~~e~~i~V~~-~~--~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~----Pe~~rNT~ 321 (561)
T COG5354 250 SYFGESNLYLLRITERSIPVEK-DL--KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF----PEQKRNTI 321 (561)
T ss_pred ceeccceEEEEeecccccceec-cc--cccceeeeecccCCceeEEecccccceeecccccc-eEEec----CCcccccc
Confidence 1256788888744433332 22 7799999999988776554 57888999999865 33333 34445678
Q ss_pred EECCCCcEEEEeeCC--CCeEEEEEcCCcceeE-EeecCCCCCcEEEEeCCCCcEEEEec------CCCCEEEeee
Q 040370 160 VFNDTEEFVLSIDEP--SNEIVIWDALTAEKVA-KWSSNHIGAPRWIEHSPAEAAFITCG------TDRSVRFWKE 226 (228)
Q Consensus 160 ~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~------~dg~i~vwd~ 226 (228)
.|+|.+++++..|-. -|.+.+||........ .+ .+ ....-+.|+|+++++.+.- .|..|+|||+
T Consensus 322 ~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~-~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 322 FFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAF-NG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred cccCcccEEEEecCCccccceEEeccCCceEEEEEe-ec--CCceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 899999999996652 3789999976655554 33 22 2345578999999888764 3788999996
No 293
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.16 E-value=5.1e-08 Score=69.01 Aligned_cols=184 Identities=15% Similarity=0.136 Sum_probs=117.2
Q ss_pred CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEE-ecccc
Q 040370 30 SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSI-VGAHG 108 (228)
Q Consensus 30 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~ 108 (228)
++..+++++.++.+..||..+|+.+......... ... . ...+..++.++.++.+..+|..+|+..... .....
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~-~~~---~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~ 108 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPI-SGA---P--VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP 108 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCG-GSG---E--EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccc-cce---e--eecccccccccceeeeEecccCCcceeeeecccccc
Confidence 5677777889999999999999988777653211 111 1 224556777778889999999999988874 32210
Q ss_pred cc-eeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeee---------eeeEEEECCCCcEEEEeeCCCCe-
Q 040370 109 TA-EATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQ---------LRFQAVFNDTEEFVLSIDEPSNE- 177 (228)
Q Consensus 109 ~~-~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~d~~- 177 (228)
.. .........+++.++.+..++.|..+|+++|+.+.......... ....+.+ .++ .++++.. ++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~-~g~~ 185 (238)
T PF13360_consen 109 PAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI-SDG-RVYVSSG-DGRV 185 (238)
T ss_dssp TCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC-CTT-EEEEECC-TSSE
T ss_pred ccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE-ECC-EEEEEcC-CCeE
Confidence 11 11122222237788888889999999999999987776532111 0122222 234 5555555 464
Q ss_pred EEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 178 IVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 178 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+.+ |..+++..-.. . ...+..+ ..+++..|+.++.++.|..||+.
T Consensus 186 ~~~-d~~tg~~~w~~--~-~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 186 VAV-DLATGEKLWSK--P-ISGIYSL-PSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp EEE-ETTTTEEEEEE--C-SS-ECEC-EECCCTEEEEEETTTEEEEEETT
T ss_pred EEE-ECCCCCEEEEe--c-CCCccCC-ceeeCCEEEEEeCCCEEEEEECC
Confidence 555 99999866433 2 2233332 33567777777799999999964
No 294
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.14 E-value=1.6e-10 Score=57.14 Aligned_cols=38 Identities=21% Similarity=0.395 Sum_probs=34.6
Q ss_pred ceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 187 EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 187 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
+++..+ .+|.++|.+++|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~-~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTF-RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEE-ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEE-cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 455566 79999999999999999999999999999997
No 295
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=7.8e-08 Score=73.36 Aligned_cols=142 Identities=7% Similarity=0.057 Sum_probs=92.5
Q ss_pred ceeeEEeCCCCCe-EEEEec---CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEe-eC--CCeEEEEEcc
Q 040370 67 AINQVRYSSTGGM-YVTASK---DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC-GK--DSTVKLWEVS 139 (228)
Q Consensus 67 ~i~~~~~~~~~~~-l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~--d~~i~~wd~~ 139 (228)
......|+|+|+. ++..+. +..|.++|+.+++....... ........|+|||+.++.. +. +..|.++|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~---~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS---QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC---CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 5678899999984 554333 35699999988876554432 4445667899999876643 33 3568888987
Q ss_pred CCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC--eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecC
Q 040370 140 SGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN--EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGT 217 (228)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 217 (228)
+++.. .+.. .........|+|+|+.++.+....+ .|++.|+.+++.......+. . ...|+|+|+.|+..+.
T Consensus 266 ~g~~~-~LT~--~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~--~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 266 TKTLT-QITN--YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--N--NSSVSTYKNYIVYSSR 338 (419)
T ss_pred CCcEE-Eccc--CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--c--CceECCCCCEEEEEEc
Confidence 76543 3322 1222345679999988777664333 68888888776643331221 1 2489999998877664
Q ss_pred C
Q 040370 218 D 218 (228)
Q Consensus 218 d 218 (228)
.
T Consensus 339 ~ 339 (419)
T PRK04043 339 E 339 (419)
T ss_pred C
Confidence 3
No 296
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.12 E-value=2.1e-09 Score=73.43 Aligned_cols=190 Identities=12% Similarity=0.104 Sum_probs=112.6
Q ss_pred eCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-----CCeEEEEeCCCCceeeE
Q 040370 28 HPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK-----DGAIRLWDGVSANCVRS 102 (228)
Q Consensus 28 ~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~v~iwd~~~~~~~~~ 102 (228)
+--+..++++..||.+.+.+.+.... ...+.+..+ .+ --+.+....++.+.++.. -+..+.|+++..+....
T Consensus 98 s~~~t~V~~~~~dg~~~v~s~~~~~~-~~~~i~~~~-~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~ 174 (319)
T KOG4714|consen 98 TMTDNRVCIGYADGSLAVFSTDKDLA-LMSRIPSIH-SG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIP 174 (319)
T ss_pred cccCCceEecCCCceEEEEechHHHh-hhhhccccc-cc-ccccceeecccEEecCCcceEeeccceeeecccccccccc
Confidence 33567899999999999999876221 111111111 11 112223334554444331 23456666654433222
Q ss_pred EecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEE
Q 040370 103 IVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIW 181 (228)
Q Consensus 103 ~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~ 181 (228)
-... ...|.+++-+| ..+.+++|+.||.+-+||.++...+..+. ..|...+..+.|+|....-+.++++||.+..|
T Consensus 175 ~~~~--~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l-~ahk~~i~eV~FHpk~p~~Lft~sedGslw~w 251 (319)
T KOG4714|consen 175 SKKA--LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLL-KAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHW 251 (319)
T ss_pred cccc--cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHH-HHhhhhhhheeccCCCchheeEecCCCcEEEE
Confidence 2221 33489999999 45677888999999999999875443332 23778889999999765544445668999999
Q ss_pred EcCCcceeEEe---------ec---------------CCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 182 DALTAEKVAKW---------SS---------------NHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 182 d~~~~~~~~~~---------~~---------------~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
|..+ ..+..- .. .-...|++ |.--|..|++|+.-+.|.+.+-
T Consensus 252 das~-~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~~ 317 (319)
T KOG4714|consen 252 DAST-TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTRH 317 (319)
T ss_pred cCCC-ceEEecCccccccccccCCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEecc
Confidence 9763 221110 00 01112222 3335778999998888988763
No 297
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.11 E-value=3.9e-08 Score=73.30 Aligned_cols=199 Identities=12% Similarity=0.122 Sum_probs=130.9
Q ss_pred cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC-----------
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD----------- 86 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------- 86 (228)
..-++..++|||.|.+|++....+ |.+|.-.....+..+. ...|..+.|+|.+++|.+=+..
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~------~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp 103 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR------HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISP 103 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeeee------cCCceecccCcccceeeeeccCCccChhhccCC
Confidence 456889999999999999887765 7899887766443333 4578999999999999986543
Q ss_pred ----CeEEEEeCCCCceeeEEecccc-------------------------------------------cceeEEEEECC
Q 040370 87 ----GAIRLWDGVSANCVRSIVGAHG-------------------------------------------TAEATSANFTK 119 (228)
Q Consensus 87 ----g~v~iwd~~~~~~~~~~~~~~~-------------------------------------------~~~i~~~~~~~ 119 (228)
..+.+||+.++..+..+..... ...+....|+|
T Consensus 104 ~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP 183 (561)
T COG5354 104 FTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISP 183 (561)
T ss_pred ccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecC
Confidence 3499999988776655433211 13345555666
Q ss_pred CC--CEEE-----EeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC----------CCCeEEEEE
Q 040370 120 DQ--RFVL-----SCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE----------PSNEIVIWD 182 (228)
Q Consensus 120 ~~--~~l~-----~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~d~~i~i~d 182 (228)
.+ ..|+ ..+.++.+++|.+..+..+.+... -...-..+.|++.+.++++-.. ....+++++
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l--fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~ 261 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL--FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLR 261 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee--EeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEe
Confidence 32 2233 234556677777765554443322 2334457788888888765321 125678888
Q ss_pred cCCcceeEEeecCCCCCcEEEEeCCCCcEEEEec--CCCCEEEeeec
Q 040370 183 ALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWKEI 227 (228)
Q Consensus 183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg~i~vwd~~ 227 (228)
++....... ....++|...+|.|.++.+++.+ .+-.+.++|+.
T Consensus 262 ~~e~~i~V~--~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 262 ITERSIPVE--KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR 306 (561)
T ss_pred eccccccee--ccccccceeeeecccCCceeEEecccccceeecccc
Confidence 763333332 25688999999999888776655 56667777653
No 298
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=6.3e-11 Score=93.47 Aligned_cols=192 Identities=19% Similarity=0.278 Sum_probs=137.3
Q ss_pred EEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC--eEE
Q 040370 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG--AIR 90 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~v~ 90 (228)
..+..|+...+|++|+-+.+.|+.|+..|.|+++++.+|........ |.++|+-+.-+.+|..+++.+.-. ...
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc----H~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC----HQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccc----cccccccccccCCcceeeeeccccCchHH
Confidence 34456889999999999999999999999999999999886554443 388999999999998777665432 478
Q ss_pred EEeCCC-CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce--eeeeeeEEEECCCCcE
Q 040370 91 LWDGVS-ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT--HTQLRFQAVFNDTEEF 167 (228)
Q Consensus 91 iwd~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 167 (228)
+|++.+ +.....+ ..-.++.|+...+.-+.|.......+||+.++..+.++.... .......+.|+|+...
T Consensus 1171 LW~~~s~~~~~Hsf------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSF------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HhccccccCccccc------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 899864 2333333 344678888765555566666679999999988777643211 1223356789999998
Q ss_pred EEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 168 VLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 168 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
++- || .+||++..+.++.+ .... .-..-.|+|+|..++.-++ |||++
T Consensus 1245 Iln----dG--vLWDvR~~~aIh~F-D~ft-~~~~G~FHP~g~eVIINSE-----IwD~R 1291 (1516)
T KOG1832|consen 1245 ILN----DG--VLWDVRIPEAIHRF-DQFT-DYGGGGFHPSGNEVIINSE-----IWDMR 1291 (1516)
T ss_pred Eee----Cc--eeeeeccHHHHhhh-hhhe-ecccccccCCCceEEeech-----hhhhH
Confidence 875 44 47999988877776 2222 2223358999988887664 66654
No 299
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.11 E-value=6.4e-10 Score=54.98 Aligned_cols=37 Identities=19% Similarity=0.469 Sum_probs=34.3
Q ss_pred eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEE
Q 040370 11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYD 47 (228)
Q Consensus 11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~ 47 (228)
....+.+|..+|++++|+|++.+|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4567779999999999999999999999999999997
No 300
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.7e-08 Score=76.11 Aligned_cols=182 Identities=10% Similarity=0.121 Sum_probs=126.0
Q ss_pred eEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-----------CCeEE
Q 040370 22 VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK-----------DGAIR 90 (228)
Q Consensus 22 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------dg~v~ 90 (228)
=+-+.|||.|.||++--..| |.+|--++....+.+. ...|.-+.|||..++|+|-+. ...++
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~------Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY------HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc------CCCceeeecCCccceEEEecCCccccCcccCCCceEE
Confidence 35688999999999988776 6799766655444333 345888999999999998752 25799
Q ss_pred EEeCCCCceeeEEeccccccee-EEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEE
Q 040370 91 LWDGVSANCVRSIVGAHGTAEA-TSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVL 169 (228)
Q Consensus 91 iwd~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (228)
|||+.+|...+.+.....+..+ .-..||.|++++|.-..+ .|.||+..+..++..-.. ....+....|+|.+..++
T Consensus 286 IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Ksl--ki~gIr~FswsP~~~llA 362 (698)
T KOG2314|consen 286 IWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSL--KISGIRDFSWSPTSNLLA 362 (698)
T ss_pred EEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeeccccc--CCccccCcccCCCcceEE
Confidence 9999999988888764323333 346899999999877664 699999776443322211 344566778888877766
Q ss_pred EeeCC----CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEE
Q 040370 170 SIDEP----SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFIT 214 (228)
Q Consensus 170 ~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 214 (228)
--... -..+.+-.+.+++.+.+. .-+.-.=..+.|..+|.+|+.
T Consensus 363 Ywtpe~~~~parvtL~evPs~~~iRt~-nlfnVsDckLhWQk~gdyLcv 410 (698)
T KOG2314|consen 363 YWTPETNNIPARVTLMEVPSKREIRTK-NLFNVSDCKLHWQKSGDYLCV 410 (698)
T ss_pred EEcccccCCcceEEEEecCccceeeec-cceeeeccEEEeccCCcEEEE
Confidence 53322 135667777777666654 334444455778788888874
No 301
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.05 E-value=6.7e-08 Score=79.04 Aligned_cols=198 Identities=12% Similarity=0.189 Sum_probs=132.5
Q ss_pred cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC----C
Q 040370 20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG----V 95 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~----~ 95 (228)
..|.++.|..+.+.++.+...|.|.+-|.++......-. ....|.+++|+||++.++..+..+++.+-+- -
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~-----vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN-----VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeee-----ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccch
Confidence 589999999999999999999999999888765432222 2678999999999999998888888776532 0
Q ss_pred C-------------------CceeeEEecccc-------------------cceeEEEEECCCCCEEEEe-----eCCCe
Q 040370 96 S-------------------ANCVRSIVGAHG-------------------TAEATSANFTKDQRFVLSC-----GKDST 132 (228)
Q Consensus 96 ~-------------------~~~~~~~~~~~~-------------------~~~i~~~~~~~~~~~l~~~-----~~d~~ 132 (228)
. |+....+.+..+ ...=+.+.|--||+++++. ...+.
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 0 111111111000 0112358899999999873 23378
Q ss_pred EEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC--CCCeEEEEEcCCcceeEEee---cCCCCCcEEEEeCC
Q 040370 133 VKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE--PSNEIVIWDALTAEKVAKWS---SNHIGAPRWIEHSP 207 (228)
Q Consensus 133 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~ 207 (228)
|++||-+ +..-..-.. ....-.++.|-|.|..+++... .|+.|.+|. ++|-....+. .....++..++|+.
T Consensus 224 irV~drE-g~Lns~se~--~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wns 299 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEP--VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWNS 299 (1265)
T ss_pred EEEeccc-chhhcccCc--ccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeeecC
Confidence 9999976 433222211 3334467889999998887643 356799998 4444333221 22334589999999
Q ss_pred CCcEEEE---ecCCCCEEEeee
Q 040370 208 AEAAFIT---CGTDRSVRFWKE 226 (228)
Q Consensus 208 ~~~~l~s---~~~dg~i~vwd~ 226 (228)
++..|+. ......|++|-+
T Consensus 300 ~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 300 NSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred CCCceeeeecccccceEEEEEe
Confidence 9999887 555555999954
No 302
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3.9e-08 Score=71.35 Aligned_cols=206 Identities=12% Similarity=0.082 Sum_probs=123.3
Q ss_pred EEEeecCcceEEEEEeCCCC-EEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeEE
Q 040370 13 FRVIQDTHNVRSVSFHPSGD-FLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAIR 90 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~ 90 (228)
.-+..|...|..++|+|..+ ++..++.+..|+|.|+++...+..+.. ...+.+++|.-+ .+++..|..+|.|.
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a-----~~~~wSC~wDlde~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA-----YNQIWSCCWDLDERHVIYAGLQNGMVL 261 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec-----cCCceeeeeccCCcceeEEeccCceEE
Confidence 34456788999999999766 788899999999999999887766654 467999999875 45788888999999
Q ss_pred EEeCCCCceee-EEeccc-------------------------------------------------ccceeEEEEECCC
Q 040370 91 LWDGVSANCVR-SIVGAH-------------------------------------------------GTAEATSANFTKD 120 (228)
Q Consensus 91 iwd~~~~~~~~-~~~~~~-------------------------------------------------~~~~i~~~~~~~~ 120 (228)
+||++..+... .+.... ..+...++++++.
T Consensus 262 vyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~ 341 (463)
T KOG1645|consen 262 VYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGV 341 (463)
T ss_pred EEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecCc
Confidence 99998653211 111100 0122333333332
Q ss_pred CCEEEEeeCC-C------eEE-EEEccCCeeEEEEecce-----eee-eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCc
Q 040370 121 QRFVLSCGKD-S------TVK-LWEVSSGRLVKQYLGAT-----HTQ-LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA 186 (228)
Q Consensus 121 ~~~l~~~~~d-~------~i~-~wd~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 186 (228)
.+.++..... . .+- --|-++|..+...+... ... ....+.-.++..+++..+...+.+.+||..++
T Consensus 342 snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ 421 (463)
T KOG1645|consen 342 SNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF 421 (463)
T ss_pred cceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence 2322222111 0 000 01112222222111100 000 01112224566788887777799999999999
Q ss_pred ceeEEeecCCCCCcEEEEeCC-CC-cEEEEecCCCCEEEeee
Q 040370 187 EKVAKWSSNHIGAPRWIEHSP-AE-AAFITCGTDRSVRFWKE 226 (228)
Q Consensus 187 ~~~~~~~~~~~~~v~~~~~~~-~~-~~l~s~~~dg~i~vwd~ 226 (228)
+.+..+ .-..+|..+.... ++ .+|++- .|..++|++.
T Consensus 422 evvQ~l--~~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~ 460 (463)
T KOG1645|consen 422 EVVQTL--ALSEPVLDICPNDTNGSSYLALL-TDDRVHIYKN 460 (463)
T ss_pred heeeec--ccCcceeecceeecCCcchhhhe-ecceEEEEec
Confidence 999887 3447787776543 33 355544 5667888764
No 303
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=7.4e-08 Score=75.56 Aligned_cols=209 Identities=12% Similarity=0.098 Sum_probs=143.7
Q ss_pred ceeEEEeecCcceEEEEEeCCC------------CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC--
Q 040370 10 KRAFRVIQDTHNVRSVSFHPSG------------DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-- 75 (228)
Q Consensus 10 ~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-- 75 (228)
+....+..|...|+.+.|.|.. -.||++...|.|.+||...+..+..+..+ ..++..++|-+
T Consensus 46 q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~----~~~~qdl~W~~~r 121 (1062)
T KOG1912|consen 46 QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHS----NDSVQDLCWVPAR 121 (1062)
T ss_pred hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCC----Ccchhheeeeecc
Confidence 3344445688999999998721 25778888999999999887655444432 77888898866
Q ss_pred -CC-CeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccC-------CeeEE
Q 040370 76 -TG-GMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSS-------GRLVK 145 (228)
Q Consensus 76 -~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~-------~~~~~ 145 (228)
+. ..|++-....++.+|+..+|+...+.... .....|+.+.| |.+.+..-+..|.+.+-+.-. ++..+
T Consensus 122 d~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys--~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q 199 (1062)
T KOG1912|consen 122 DDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS--HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ 199 (1062)
T ss_pred CcchheeEEecCCcEEEEEEccCCceeeccccC--CcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEE
Confidence 33 46677777889999999999988777664 45677799999 667777667777777766432 12211
Q ss_pred EEecce--------------eee---------eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEE
Q 040370 146 QYLGAT--------------HTQ---------LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRW 202 (228)
Q Consensus 146 ~~~~~~--------------~~~---------~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~ 202 (228)
.-..+. +.. ....++|+|.-+.++.... ...+.++|++-..++.... -..+.+.-
T Consensus 200 I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~-prellv~dle~~~~l~vvp-ier~~akf 277 (1062)
T KOG1912|consen 200 ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF-PRELLVFDLEYECCLAVVP-IERGGAKF 277 (1062)
T ss_pred EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe-ccceEEEcchhhceeEEEE-eccCCcce
Confidence 111100 000 1123567888777666666 4899999998888887763 33455556
Q ss_pred EEeCCC--CcEEEEecCCCCEEEeee
Q 040370 203 IEHSPA--EAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 203 ~~~~~~--~~~l~s~~~dg~i~vwd~ 226 (228)
+.+-|+ ...|++...||.+.+|-.
T Consensus 278 v~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 278 VDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred eEeccCCCcceEEEEecCCeEEEEEe
Confidence 667665 457999999999999964
No 304
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.00 E-value=1.8e-07 Score=70.89 Aligned_cols=180 Identities=12% Similarity=0.001 Sum_probs=111.1
Q ss_pred CEEEEecCCCeEEEEEcccceEEeeeccceeeec---cceeeEEeCC--CCCeEEEEecCCeEEEEeCCCCceeeEEecc
Q 040370 32 DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVN---GAINQVRYSS--TGGMYVTASKDGAIRLWDGVSANCVRSIVGA 106 (228)
Q Consensus 32 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 106 (228)
..++.+..++.+..+|.++|+...........-. .....+.-+| .+..++.++.+|.+..+|.++++........
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~ 270 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS 270 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC
Confidence 4677788889999999999886654332110000 0011111112 3557888888999999999999877655421
Q ss_pred cccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCc
Q 040370 107 HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA 186 (228)
Q Consensus 107 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 186 (228)
. ..... ..+..++.++.+|.+..+|..+++.+...... .......... .+..+++.+. +|.++++|..++
T Consensus 271 ---~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~-~~~~~ssp~i--~g~~l~~~~~-~G~l~~~d~~tG 340 (377)
T TIGR03300 271 ---S-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDEL-KYRQLTAPAV--VGGYLVVGDF-EGYLHWLSREDG 340 (377)
T ss_pred ---C-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccc-cCCccccCEE--ECCEEEEEeC-CCEEEEEECCCC
Confidence 1 11111 24667888889999999999999876554221 1111111111 3456666554 799999999999
Q ss_pred ceeEEeecCCCCCcE-EEEeCCCCcEEEEecCCCCEEEe
Q 040370 187 EKVAKWSSNHIGAPR-WIEHSPAEAAFITCGTDRSVRFW 224 (228)
Q Consensus 187 ~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~dg~i~vw 224 (228)
+.+.++. .+...+. ...+. + ..|+.++.||.|..|
T Consensus 341 ~~~~~~~-~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 341 SFVARLK-TDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEE-cCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 9988873 3333222 22222 3 358888899998765
No 305
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.00 E-value=1.9e-06 Score=61.73 Aligned_cols=201 Identities=12% Similarity=0.105 Sum_probs=133.5
Q ss_pred cceEEEEEeC-CCCEEEEecCCC-eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-----CCeEEEE
Q 040370 20 HNVRSVSFHP-SGDFLLAGTDHP-IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK-----DGAIRLW 92 (228)
Q Consensus 20 ~~v~~~~~~~-~~~~l~~~~~d~-~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~v~iw 92 (228)
.....++.+| ....++.+-.-| ...+||..+++....+..+...|- --.-.|+++|++|++.-. .|.|-||
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHF--yGHg~fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHF--YGHGVFSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEE--ecCEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence 3455678888 556666676655 467899999988776665543321 123679999999998744 4889999
Q ss_pred eCC-CCceeeEEecccccceeEEEEECCCCCEEEEee------------------CCCeEEEEEccCCeeEEEEec--ce
Q 040370 93 DGV-SANCVRSIVGAHGTAEATSANFTKDQRFVLSCG------------------KDSTVKLWEVSSGRLVKQYLG--AT 151 (228)
Q Consensus 93 d~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------------------~d~~i~~wd~~~~~~~~~~~~--~~ 151 (228)
|.. +-+.+.++..+ ......+.+.||++.|+.+- .+.++.+.|.++|+.+.+... ..
T Consensus 83 d~~~~~~ri~E~~s~--GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~ 160 (305)
T PF07433_consen 83 DAARGYRRIGEFPSH--GIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL 160 (305)
T ss_pred ECcCCcEEEeEecCC--CcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence 998 55666777665 44556788999998777663 233566677788888777554 33
Q ss_pred eeeeeeEEEECCCCcEEEEeeCC----C--CeEEEEEcCCcceeEEee------cCCCCCcEEEEeCCCCcEEEEe-cCC
Q 040370 152 HTQLRFQAVFNDTEEFVLSIDEP----S--NEIVIWDALTAEKVAKWS------SNHIGAPRWIEHSPAEAAFITC-GTD 218 (228)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~----d--~~i~i~d~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~s~-~~d 218 (228)
+...+.-+++.+++..++..-.+ + --+-+++. ++.+..+. ..-.+.+-+|++++++.+++.+ =.-
T Consensus 161 ~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG 238 (305)
T PF07433_consen 161 HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG 238 (305)
T ss_pred cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence 56667778888887766654321 0 12333332 22222221 2345678999999999877554 478
Q ss_pred CCEEEeee
Q 040370 219 RSVRFWKE 226 (228)
Q Consensus 219 g~i~vwd~ 226 (228)
+.+.+||.
T Consensus 239 g~~~~~d~ 246 (305)
T PF07433_consen 239 GRVAVWDA 246 (305)
T ss_pred CEEEEEEC
Confidence 88999985
No 306
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.99 E-value=7.9e-08 Score=73.15 Aligned_cols=125 Identities=12% Similarity=0.148 Sum_probs=86.8
Q ss_pred EEEeecCcceEEEEEeC-CCCEEEEe----cCCCe----EEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEE
Q 040370 13 FRVIQDTHNVRSVSFHP-SGDFLLAG----TDHPI----AHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTA 83 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~-~~~~l~~~----~~d~~----i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 83 (228)
+....-.....++.|+. +...+.+. +.+|. -.+|++..++. +............+.+++++|+...++.|
T Consensus 199 L~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl-qrvsvtsipL~s~v~~ca~sp~E~kLvlG 277 (545)
T PF11768_consen 199 LSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL-QRVSVTSIPLPSQVICCARSPSEDKLVLG 277 (545)
T ss_pred EEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce-eEEEEEEEecCCcceEEecCcccceEEEE
Confidence 33334455567788876 44444442 33443 34566655442 22233333447889999999999999999
Q ss_pred ecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe
Q 040370 84 SKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR 142 (228)
Q Consensus 84 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 142 (228)
+.||+|.+||...+..... +. .-..+.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 278 C~DgSiiLyD~~~~~t~~~-ka---~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 278 CEDGSIILYDTTRGVTLLA-KA---EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecCCeEEEEEcCCCeeeee-ee---cccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 9999999999876633322 22 4567889999999999999999999999986543
No 307
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.99 E-value=2e-08 Score=70.63 Aligned_cols=203 Identities=18% Similarity=0.185 Sum_probs=129.3
Q ss_pred CcceEEEEEeCCC--CEEEEecCCCeEEEEEcccceEE----------------------eee-----------------
Q 040370 19 THNVRSVSFHPSG--DFLLAGTDHPIAHLYDVNTFQCY----------------------LSA----------------- 57 (228)
Q Consensus 19 ~~~v~~~~~~~~~--~~l~~~~~d~~i~vw~~~~~~~~----------------------~~~----------------- 57 (228)
...|..+.|..++ ..++..+.|.+|++|.+...... +.+
T Consensus 85 eEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~ 164 (460)
T COG5170 85 EEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPC 164 (460)
T ss_pred HHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccc
Confidence 4568888887643 46777788999999987543100 000
Q ss_pred ccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEE---eccc---ccceeEEEEECC-CCCEEEEeeCC
Q 040370 58 NVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSI---VGAH---GTAEATSANFTK-DQRFVLSCGKD 130 (228)
Q Consensus 58 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~---~~~~i~~~~~~~-~~~~l~~~~~d 130 (228)
+.....|..-|+++.|+.+.+.++++ .|-.|.+|+++-......+ +.+. -...|++..|+| ..+.+...+..
T Consensus 165 rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSk 243 (460)
T COG5170 165 RVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSK 243 (460)
T ss_pred eeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCC
Confidence 00001224567889999888777765 5678999998754322222 2111 134578889999 45567777788
Q ss_pred CeEEEEEccCCeeE------EEE--ecc------eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCC
Q 040370 131 STVKLWEVSSGRLV------KQY--LGA------THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNH 196 (228)
Q Consensus 131 ~~i~~wd~~~~~~~------~~~--~~~------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 196 (228)
|.|++-|+|..... ... .+. .....+..+.|+++|+++++-.. -++++||++..+.+......|
T Consensus 244 G~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy--ltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 244 GEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY--LTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred CcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc--ceEEEEecccccCCceeechH
Confidence 99999999853221 111 000 02345678899999999998665 899999998765443332222
Q ss_pred ------------CCCc---EEEEeCCCCcEEEEecCCCCEEEe
Q 040370 197 ------------IGAP---RWIEHSPAEAAFITCGTDRSVRFW 224 (228)
Q Consensus 197 ------------~~~v---~~~~~~~~~~~l~s~~~dg~i~vw 224 (228)
...| ..+.|+.+...+++|+..+..-++
T Consensus 322 ~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 322 CDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred HHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence 1222 346788888888888877665554
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.1e-07 Score=74.59 Aligned_cols=184 Identities=12% Similarity=0.116 Sum_probs=125.8
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN 98 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 98 (228)
...+.|++++ ++.|+-|+.+|.|++++..... ...+. | ... ..+|.++++|+.||.|.|-.+-+.+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~----~-s~~------~~~Gey~asCS~DGkv~I~sl~~~~ 104 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFD----H-SSS------ILEGEYVASCSDDGKVVIGSLFTDD 104 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc-ccccc----c-ccc------ccCCceEEEecCCCcEEEeeccCCc
Confidence 3556777774 6789999999999999876532 11111 1 111 5579999999999999999998888
Q ss_pred eeeEEecccccceeEEEEECCC-----CCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370 99 CVRSIVGAHGTAEATSANFTKD-----QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE 173 (228)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
....+.. ..++.+++++|+ .+.+++|+.-| +.++.-+=.........+...+.+.++.|. |.+++-+ .
T Consensus 105 ~~~~~df---~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWa-n 177 (846)
T KOG2066|consen 105 EITQYDF---KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWA-N 177 (846)
T ss_pred cceeEec---CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEe-c
Confidence 7777665 668999999997 56799999888 777653321111222334466778888885 5566654 3
Q ss_pred CCCeEEEEEcCCcceeEEeecCCCC-----CcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 174 PSNEIVIWDALTAEKVAKWSSNHIG-----APRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 174 ~d~~i~i~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
|-.|++||..+.+.+..+...+.. -...+.|.++.++++ |...+|+|..+
T Consensus 178 -d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI--GW~d~v~i~~I 232 (846)
T KOG2066|consen 178 -DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI--GWGDSVKICSI 232 (846)
T ss_pred -CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE--ecCCeEEEEEE
Confidence 567999999998888777544422 234577776655444 34445766654
No 309
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=2e-07 Score=73.83 Aligned_cols=194 Identities=13% Similarity=0.171 Sum_probs=124.0
Q ss_pred EEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC-----eEEEEeCCCC---
Q 040370 26 SFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG-----AIRLWDGVSA--- 97 (228)
Q Consensus 26 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~--- 97 (228)
+|++.+..++.|+.+|.|.+.+-. .+....++... .+-|..+....+.++|++-++|+ .+++||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~---~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYE---QSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecc---hhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 457788999999999987776632 22223333221 22244444443446788777664 4999998643
Q ss_pred c---ee---eEE--ecccccceeEEEEECCCCCEEEEeeCCCeEEEEEcc--CCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370 98 N---CV---RSI--VGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVS--SGRLVKQYLGATHTQLRFQAVFNDTEEF 167 (228)
Q Consensus 98 ~---~~---~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (228)
+ ++ +.+ ..+....++.+++.+.+-+.+++|-.+|.|..+.-+ ..+-.+....+....+++.+.+..++..
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 1 22 111 122236788999999999999999999999988532 1111222233446778899999888877
Q ss_pred -EEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 168 -VLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 168 -~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
++++.. ..|.+|.+....+.......|..+++|..+++....+++++.. .+.+|+.
T Consensus 186 ~lFv~Tt--~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~s 242 (933)
T KOG2114|consen 186 VLFVATT--EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDS 242 (933)
T ss_pred eEEEEec--ceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcC
Confidence 333333 7899999874443444446788899999999866545555433 4666653
No 310
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.97 E-value=3.8e-07 Score=63.57 Aligned_cols=171 Identities=13% Similarity=0.193 Sum_probs=111.3
Q ss_pred ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccc--eeeeccceeeEEeCCC------CCeEEEEecCCeEEEE
Q 040370 21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP--EISVNGAINQVRYSST------GGMYVTASKDGAIRLW 92 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~------~~~l~~~~~dg~v~iw 92 (228)
.=+.++|+||+..||.+...|+|+++|+...+........ .+.....|..+.|.+. ...|+.-..+|.++-|
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 3467999999999999999999999999864432211111 1112456777777542 2256666778887777
Q ss_pred eCCCC-----ceeeEEec-ccccceeEEEEECCCCCEEEEeeCCC-----------eEEEEEccCCeeEEE---------
Q 040370 93 DGVSA-----NCVRSIVG-AHGTAEATSANFTKDQRFVLSCGKDS-----------TVKLWEVSSGRLVKQ--------- 146 (228)
Q Consensus 93 d~~~~-----~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~-----------~i~~wd~~~~~~~~~--------- 146 (228)
-+..+ +....+.. .+....|.++.++|..++|+.|+... -+..|.+-++.+-..
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~ 204 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI 204 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc
Confidence 65322 22233222 12266899999999988887776321 255565433211000
Q ss_pred -----------E-------ecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe
Q 040370 147 -----------Y-------LGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW 192 (228)
Q Consensus 147 -----------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 192 (228)
+ ........+..+..+|++..+++... +|.|.+|++.+-.....+
T Consensus 205 ~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~-sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 205 TASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHF-SGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred cccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEc-CCeEEEEecCcchhhccc
Confidence 0 01123567788999999999999877 699999999988877776
No 311
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.6e-08 Score=74.27 Aligned_cols=207 Identities=15% Similarity=0.118 Sum_probs=141.4
Q ss_pred eecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-CCeEEEEeC
Q 040370 16 IQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK-DGAIRLWDG 94 (228)
Q Consensus 16 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~v~iwd~ 94 (228)
.-|...|+.+.-. ..+++.+++.||.++.|.-..-..+........| ...|.+++.+-++..+.|.+. |..++++|+
T Consensus 6 ymhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraH-L~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 6 YMHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAH-LGVILSLAVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred hcccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHH-HHHHHhhhccccceeEeeccCcccceeEEEe
Confidence 3577778877554 5779999999999999986553333333322233 778889999999999999777 999999999
Q ss_pred CCCceeeEEecccccceeEEEEECCC-C--CEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370 95 VSANCVRSIVGAHGTAEATSANFTKD-Q--RFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI 171 (228)
Q Consensus 95 ~~~~~~~~~~~~~~~~~i~~~~~~~~-~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
++-..+..++...-++.+..+ .++. . ..-++.-.++.+.++|-....+...+....|..++....+++.+..+++.
T Consensus 84 En~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred eccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence 887665444443213222222 2221 1 22233446788999998765433333334478889999999999988886
Q ss_pred eCCCCeEEEEEcCC-cceeE-----Eee--------cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 172 DEPSNEIVIWDALT-AEKVA-----KWS--------SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 172 ~~~d~~i~i~d~~~-~~~~~-----~~~--------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
.. .|.|.-|.... .+.+. .+. ........++.|+|++..+.+-+.|..|++++.
T Consensus 163 D~-~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 163 DI-SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF 230 (558)
T ss_pred cc-cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEe
Confidence 65 59999998762 11111 110 123456788999999999999999999999875
No 312
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.96 E-value=2e-08 Score=76.24 Aligned_cols=78 Identities=21% Similarity=0.282 Sum_probs=64.9
Q ss_pred EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEe
Q 040370 14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD 93 (228)
Q Consensus 14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd 93 (228)
..+.....|.|++++|+.+.|+.|+.||.|.+||...+..... +. .-..+.++|+|+|..+++|+..|.+.+||
T Consensus 254 tsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka-----~~~P~~iaWHp~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 254 TSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KA-----EFIPTLIAWHPDGAIFVVGSEQGELQCFD 327 (545)
T ss_pred EEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-ee-----cccceEEEEcCCCcEEEEEcCCceEEEEE
Confidence 3346788999999999999999999999999999987653322 11 33468899999999999999999999999
Q ss_pred CCCC
Q 040370 94 GVSA 97 (228)
Q Consensus 94 ~~~~ 97 (228)
+.-.
T Consensus 328 ~ALs 331 (545)
T PF11768_consen 328 MALS 331 (545)
T ss_pred eecC
Confidence 7643
No 313
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=8.1e-09 Score=80.19 Aligned_cols=157 Identities=8% Similarity=0.125 Sum_probs=121.7
Q ss_pred ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce---------------eeEEecccccceeEEEEECCCCCEEEEeeC
Q 040370 65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC---------------VRSIVGAHGTAEATSANFTKDQRFVLSCGK 129 (228)
Q Consensus 65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~---------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 129 (228)
.....|+.|+....+++.|+.||.+++..+.+... -+.+.+| ...|..+.|+.+.+.|-+...
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH--~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGH--NASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccC--cceEEEEEeccccccccccCC
Confidence 56789999999999999999999999998765321 1233444 788999999999999999999
Q ss_pred CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCC
Q 040370 130 DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAE 209 (228)
Q Consensus 130 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (228)
+|.|.+|-+-.+.....+........+.+++|+.+|..+...-. ||.|.+=.+...+....-. .......+.|++|.
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYe-DGavIVGsvdGNRIwgKeL--kg~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYE-DGAVIVGSVDGNRIWGKEL--KGQLLAHVLWSEDL 168 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEc-cCCEEEEeeccceecchhc--chheccceeecccH
Confidence 99999999998887777666667888899999999998877555 7888776654333222211 11234468899999
Q ss_pred cEEEEecCCCCEEEeee
Q 040370 210 AAFITCGTDRSVRFWKE 226 (228)
Q Consensus 210 ~~l~s~~~dg~i~vwd~ 226 (228)
+.++.+-..|.+.++|.
T Consensus 169 ~~~Lf~~ange~hlydn 185 (1189)
T KOG2041|consen 169 EQALFKKANGETHLYDN 185 (1189)
T ss_pred HHHHhhhcCCcEEEecc
Confidence 88888888888988874
No 314
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.92 E-value=6.5e-07 Score=67.88 Aligned_cols=183 Identities=14% Similarity=0.082 Sum_probs=111.5
Q ss_pred CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEeccccc
Q 040370 30 SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGT 109 (228)
Q Consensus 30 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 109 (228)
.+..+++++.++.+..+|..+|+.+......... ...... ++..++.++.+|.+..+|.++|+.+......
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~----~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--- 134 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERL----SGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS--- 134 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCc----ccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC---
Confidence 4678888989999999999999987766553211 112222 4667888889999999999999987765542
Q ss_pred ceeEE-EEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeee---eeEEEECCCCcEEEEeeCCCCeEEEEEcCC
Q 040370 110 AEATS-ANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQL---RFQAVFNDTEEFVLSIDEPSNEIVIWDALT 185 (228)
Q Consensus 110 ~~i~~-~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 185 (228)
..+.+ ... .+..++.++.++.++.+|.++++.+..+........ ....... + ..++.+ ..++.+..+|.++
T Consensus 135 ~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~-~~~g~v~ald~~t 209 (377)
T TIGR03300 135 SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVG-FAGGKLVALDLQT 209 (377)
T ss_pred ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEE-CCCCEEEEEEccC
Confidence 22221 111 345677788899999999999988776653211100 0111111 2 344443 3468999999999
Q ss_pred cceeEEeecCCCC------CcEEEEeCC--CCcEEEEecCCCCEEEeee
Q 040370 186 AEKVAKWSSNHIG------APRWIEHSP--AEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 186 ~~~~~~~~~~~~~------~v~~~~~~~--~~~~l~s~~~dg~i~vwd~ 226 (228)
|+........... ....+.-+| .+..++.++.+|.+..||.
T Consensus 210 G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~ 258 (377)
T TIGR03300 210 GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDL 258 (377)
T ss_pred CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEEC
Confidence 8876543211100 000011111 2445666666777777764
No 315
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.90 E-value=3.9e-06 Score=59.36 Aligned_cols=146 Identities=16% Similarity=0.117 Sum_probs=94.9
Q ss_pred CCCeEEEEEcccceEEeeeccceeeeccceeeEE--eCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEE
Q 040370 39 DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVR--YSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSAN 116 (228)
Q Consensus 39 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~ 116 (228)
.+|.|..+|..+|+.+....... ...... ..+++..+++++.++.+..||..+|+.+............ .
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~- 72 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGP-----GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA--P- 72 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSS-----SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG--E-
T ss_pred CCCEEEEEECCCCCEEEEEECCC-----CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce--e-
Confidence 36899999999999887775421 122222 2235667888889999999999999988777653211111 1
Q ss_pred ECCCCCEEEEeeCCCeEEEEEccCCeeEEEE-ecceeee-eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec
Q 040370 117 FTKDQRFVLSCGKDSTVKLWEVSSGRLVKQY-LGATHTQ-LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS 194 (228)
Q Consensus 117 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 194 (228)
...+..++.++.++.++.+|.++|+.+... ....... ..........+..+++... ++.|..+|.++|+.+.....
T Consensus 73 -~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 73 -VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp -EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEETTTTEEEEEEES
T ss_pred -eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEecCCCcEEEEeec
Confidence 113556677778889999999999998874 3221110 1111111222666666555 59999999999999877743
No 316
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.89 E-value=1.3e-06 Score=68.18 Aligned_cols=186 Identities=12% Similarity=0.129 Sum_probs=119.7
Q ss_pred CCCEEEEecC-CCeEEEEEcccceEEeeeccceeeeccceeeEEe-------------------CCCCCeEEE-EecCCe
Q 040370 30 SGDFLLAGTD-HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRY-------------------SSTGGMYVT-ASKDGA 88 (228)
Q Consensus 30 ~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~-------------------~~~~~~l~~-~~~dg~ 88 (228)
||++|..-.. +..|...+++..++.+....+. ...+..+.| +|+|+.+.. .-..+.
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn---~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~ 216 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPN---VQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSL 216 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCC---ccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEE
Confidence 6778877654 5667777777766555444433 223333333 334443322 222356
Q ss_pred EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC---------------------------------------
Q 040370 89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK--------------------------------------- 129 (228)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--------------------------------------- 129 (228)
+.+.|.++.+....+... .....++++|+++++++.+.
T Consensus 217 vSvID~etmeV~~qV~Vd---gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V 293 (635)
T PRK02888 217 FTAVDAETMEVAWQVMVD---GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTI 293 (635)
T ss_pred EEEEECccceEEEEEEeC---CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEE
Confidence 777787777666665552 24456778888888776651
Q ss_pred -CCeEEEEEccC-----CeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcce------------eEE
Q 040370 130 -DSTVKLWEVSS-----GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK------------VAK 191 (228)
Q Consensus 130 -d~~i~~wd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~------------~~~ 191 (228)
++.|.+.|.++ .+.+..+. -......+.++|+++++++++..++++.++|+.+.+. ..+
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIP---VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae 370 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVP---VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE 370 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEE---CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence 24466777665 23333333 3344567889999999999999999999999988653 222
Q ss_pred eecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 192 WSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 192 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
. .- .......+|.++|....|---|..|-.||+
T Consensus 371 v-ev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~ 403 (635)
T PRK02888 371 P-EL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNI 403 (635)
T ss_pred e-cc-CCCcceEEECCCCCEEEeEeecceeEEEeh
Confidence 2 12 334556789999988888888999999996
No 317
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.89 E-value=4.2e-10 Score=85.83 Aligned_cols=201 Identities=13% Similarity=0.166 Sum_probs=128.1
Q ss_pred cCcceEEEEEeC--CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCeEEEEe----cCCeEE
Q 040370 18 DTHNVRSVSFHP--SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGMYVTAS----KDGAIR 90 (228)
Q Consensus 18 ~~~~v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~----~dg~v~ 90 (228)
....+.|+++.- +...+++|..+|.|.+-............ ...+....++++|++ |.+.||+|- .|..+.
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~--tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEV--TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCccccccee--cccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence 455678888765 34578899999999998877543221111 112267899999998 566777763 367899
Q ss_pred EEeCCCC--cee--eEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee-EEEEecceeeeeeeEEEECC-C
Q 040370 91 LWDGVSA--NCV--RSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL-VKQYLGATHTQLRFQAVFND-T 164 (228)
Q Consensus 91 iwd~~~~--~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~-~ 164 (228)
|||+.++ .+. ..+... ......+++|..+.+.+.+|...+.++++|++.... ...+ ....+..+...| .
T Consensus 133 Iwdi~s~ltvPke~~~fs~~-~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv----nTk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFSSS-TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV----NTKYVQGITVDPFS 207 (783)
T ss_pred ceecccccCCCccccccccc-cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh----hhhhcccceecCCC
Confidence 9999876 221 122221 134456888888889999999999999999984322 1122 222344556667 4
Q ss_pred CcEEEEeeCCCCeEEEEE-cCCcceeEEeecCC----CCCcEEEEeCCCC-cEEEEec-CCCCEEEeeec
Q 040370 165 EEFVLSIDEPSNEIVIWD-ALTAEKVAKWSSNH----IGAPRWIEHSPAE-AAFITCG-TDRSVRFWKEI 227 (228)
Q Consensus 165 ~~~~~~~~~~d~~i~i~d-~~~~~~~~~~~~~~----~~~v~~~~~~~~~-~~l~s~~-~dg~i~vwd~~ 227 (228)
..|+.+ .. ||.|.+|| .++-+.+....... ...+..++|+|.. .++++.. ..++|+++|+.
T Consensus 208 ~nY~cs-~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 208 PNYFCS-NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCceec-cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 455544 44 79999999 55544433321222 2348999999943 3455555 45678888764
No 318
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.87 E-value=7.2e-06 Score=57.78 Aligned_cols=204 Identities=11% Similarity=0.127 Sum_probs=115.3
Q ss_pred EeecCcceEEEEEeCCCC-EEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEe
Q 040370 15 VIQDTHNVRSVSFHPSGD-FLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD 93 (228)
Q Consensus 15 ~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd 93 (228)
+.+-...+..++|+|+.+ ++++....+.|..++.+ |+.+....... .+..-.|++..++.++++.-.++.+.+++
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g---~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG---FGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS----SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC---CCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 334456799999999755 66677778888888864 67666655432 45678899987777777666689999998
Q ss_pred CCCCc------eeeEEe--cc-cccceeEEEEECCCCCEEEEeeCCCeEEEEEccC---CeeEEEEec------ceeeee
Q 040370 94 GVSAN------CVRSIV--GA-HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS---GRLVKQYLG------ATHTQL 155 (228)
Q Consensus 94 ~~~~~------~~~~~~--~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~---~~~~~~~~~------~~~~~~ 155 (228)
+.... ....+. .. .+...+-.++|+|.++.|+.+-...-..+|.++. ...+..... ......
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 84321 112222 11 1245688999999888888777776677777654 222221111 112234
Q ss_pred eeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec--CC------CCCcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370 156 RFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS--NH------IGAPRWIEHSPAEAAFITCGTDRSVRFW 224 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~------~~~v~~~~~~~~~~~l~s~~~dg~i~vw 224 (228)
...+.++|....+++-+.....+..+| .+|+.+..+.- +. -.+.-.|+|.++|++.+++ +-+...+|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 567788888776666666679999999 67776665421 11 1357789999999765554 55544443
No 319
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.80 E-value=1.5e-06 Score=66.22 Aligned_cols=185 Identities=16% Similarity=0.152 Sum_probs=112.9
Q ss_pred ecCcceEEEEEeCCCCEEEEe---cCC-CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEE-ecCCe--E
Q 040370 17 QDTHNVRSVSFHPSGDFLLAG---TDH-PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTA-SKDGA--I 89 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~---~~d-~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~--v 89 (228)
.....+..-+|+|++..++-. ... ..+.++++++++....... .+.-..-+|+|+|+.++-+ ..||. |
T Consensus 190 ~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~-----~g~~~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 190 DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF-----NGNNGAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc-----CCccCCccCCCCCCEEEEEECCCCCccE
Confidence 345677778899998876643 222 4689999998875554442 3344557899999877644 45665 6
Q ss_pred EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-CC--eEEEEEccCCeeEEEEecceeeeeeeEEEECCCCc
Q 040370 90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-DS--TVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEE 166 (228)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (228)
.+.|+..++..+ +... .+.-..-.|+|||++++-.+. .| .|.++|.+.+.. ..+.. .........++|+++
T Consensus 265 y~~dl~~~~~~~-Lt~~--~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~--~~~~~~~p~~SpdG~ 338 (425)
T COG0823 265 YLMDLDGKNLPR-LTNG--FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF--SGGGNSNPVWSPDGD 338 (425)
T ss_pred EEEcCCCCccee-cccC--CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec--cCCCCcCccCCCCCC
Confidence 666877766443 3332 333346789999998876653 34 477777765544 33332 122223778999999
Q ss_pred EEEEeeCCCCe--EEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEE
Q 040370 167 FVLSIDEPSNE--IVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFIT 214 (228)
Q Consensus 167 ~~~~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 214 (228)
+++.....+|. |.+.|+.++.....+ ........-.|.|+++.++.
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~l--t~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRIL--TSTYLNESPSWAPNGRMIMF 386 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEc--cccccCCCCCcCCCCceEEE
Confidence 99987754455 777777666643222 22222223345555554443
No 320
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.1e-07 Score=68.63 Aligned_cols=207 Identities=11% Similarity=0.071 Sum_probs=136.5
Q ss_pred EeecCcceEEEEEeCCCCEEEEecC-CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCC-C-eEE-EEecCCeEE
Q 040370 15 VIQDTHNVRSVSFHPSGDFLLAGTD-HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG-G-MYV-TASKDGAIR 90 (228)
Q Consensus 15 ~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~-~l~-~~~~dg~v~ 90 (228)
+..|...|.+++.+-++-.+.+.+. |..++++|+++-......+.... .+.+. ...+|.. . .++ +.-.+|.+.
T Consensus 49 FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l--Pg~a~-wv~skGd~~s~IAVs~~~sg~i~ 125 (558)
T KOG0882|consen 49 FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDL--PGFAE-WVTSKGDKISLIAVSLFKSGKIF 125 (558)
T ss_pred hHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccC--CCceE-EecCCCCeeeeEEeecccCCCcE
Confidence 3357788889999999999999777 99999999998665433333211 12221 1222221 1 333 334679999
Q ss_pred EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC------CeeEEEEe-------cceeeeeee
Q 040370 91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS------GRLVKQYL-------GATHTQLRF 157 (228)
Q Consensus 91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~------~~~~~~~~-------~~~~~~~~~ 157 (228)
++|-....+.......-+..+|..+.+++.+..+++....|.|.-|.... .+....++ -........
T Consensus 126 VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pt 205 (558)
T KOG0882|consen 126 VVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPT 205 (558)
T ss_pred EECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCcc
Confidence 99977655333333333388999999999999999999999999998762 11111111 111344567
Q ss_pred EEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee-------------------------------cCCC-CCcEEEEe
Q 040370 158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS-------------------------------SNHI-GAPRWIEH 205 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-------------------------------~~~~-~~v~~~~~ 205 (228)
++.++|++..+...+. |..|++++.++++....+. ..|. ..-+.+.|
T Consensus 206 s~Efsp~g~qistl~~-DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~f 284 (558)
T KOG0882|consen 206 SFEFSPDGAQISTLNP-DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVF 284 (558)
T ss_pred ceEEccccCcccccCc-ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEE
Confidence 8899999999998875 8999999999887544331 0111 23345678
Q ss_pred CCCCcEEEEecCCCCEEEeee
Q 040370 206 SPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 206 ~~~~~~l~s~~~dg~i~vwd~ 226 (228)
...+++|+-++-=| |++.++
T Consensus 285 des~~flly~t~~g-ikvin~ 304 (558)
T KOG0882|consen 285 DESGNFLLYGTILG-IKVINL 304 (558)
T ss_pred cCCCCEEEeeccee-EEEEEe
Confidence 88888888776544 555543
No 321
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.76 E-value=7.1e-06 Score=62.87 Aligned_cols=144 Identities=16% Similarity=0.199 Sum_probs=83.3
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS 96 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 96 (228)
........+.++|+|+++++++ +|.-.|+.....+... .+.-...+|.+.+ .+|+-...+.|.++.--+
T Consensus 30 ~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~---------~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA---------FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFK 98 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE---------EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTE
T ss_pred CCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc---------cCceeEEEEecCc-cEEEEECCCeEEEEEcCc
Confidence 4455689999999999999854 6777888844433211 3445678898844 577777788999963223
Q ss_pred CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370 97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN 176 (228)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 176 (228)
.+....+... ..+..+-. |..|...+.+ .|.+||..+++.+.++.. ..+..+.|++++.+++..+. .
T Consensus 99 ~~~~k~i~~~---~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v----~~vk~V~Ws~~g~~val~t~--~ 165 (443)
T PF04053_consen 99 NEVVKSIKLP---FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV----SAVKYVIWSDDGELVALVTK--D 165 (443)
T ss_dssp E-TT-----S---S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE-S---
T ss_pred cccceEEcCC---cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec----CCCcEEEEECCCCEEEEEeC--C
Confidence 3333344432 22333422 7777766554 899999999999998864 23688999999999998775 5
Q ss_pred eEEEEEcC
Q 040370 177 EIVIWDAL 184 (228)
Q Consensus 177 ~i~i~d~~ 184 (228)
.+.+++..
T Consensus 166 ~i~il~~~ 173 (443)
T PF04053_consen 166 SIYILKYN 173 (443)
T ss_dssp SEEEEEE-
T ss_pred eEEEEEec
Confidence 67776644
No 322
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.74 E-value=2.5e-06 Score=66.78 Aligned_cols=134 Identities=15% Similarity=0.198 Sum_probs=87.2
Q ss_pred CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe-----------------------------------
Q 040370 40 HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS----------------------------------- 84 (228)
Q Consensus 40 d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------------------------------- 84 (228)
.+.+.+.|.++.+....... .+....++++|+|+++++.+
T Consensus 214 ~~~vSvID~etmeV~~qV~V-----dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdG 288 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMV-----DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAG 288 (635)
T ss_pred eEEEEEEECccceEEEEEEe-----CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCC
Confidence 35566667776655444433 33445677788887776664
Q ss_pred -----cCCeEEEEeCCC-----CceeeEEecccccceeEEEEECCCCCEEEEee-CCCeEEEEEccCCee----------
Q 040370 85 -----KDGAIRLWDGVS-----ANCVRSIVGAHGTAEATSANFTKDQRFVLSCG-KDSTVKLWEVSSGRL---------- 143 (228)
Q Consensus 85 -----~dg~v~iwd~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~---------- 143 (228)
.++.|.+.|..+ .+....+.. ......+.++|||+++++++ .+.++.|+|+.+.+.
T Consensus 289 K~~~V~gn~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~ 365 (635)
T PRK02888 289 KFKTIGGSKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRD 365 (635)
T ss_pred CEEEECCCEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccc
Confidence 124577777776 344555544 45678899999999877665 588999999987553
Q ss_pred --EEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC
Q 040370 144 --VKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT 185 (228)
Q Consensus 144 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 185 (228)
..+.. -........|.++|. .+++-.-|..|..|++..
T Consensus 366 ~vvaeve---vGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 366 AVVAEPE---LGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eEEEeec---cCCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence 22221 122334567788875 555555589999999876
No 323
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=3.8e-05 Score=58.27 Aligned_cols=194 Identities=17% Similarity=0.147 Sum_probs=135.2
Q ss_pred eEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec---CCeEEEEeCCCC
Q 040370 22 VRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK---DGAIRLWDGVSA 97 (228)
Q Consensus 22 v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~v~iwd~~~~ 97 (228)
-..++.++.+..++ ....++.|.+.|....+....... ......++++|+++.+..+.. ++.+.+.|..++
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-----G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~ 150 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-----GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN 150 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-----ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC
Confidence 34677888777544 445568899999777665555443 235678999999987776655 689999999988
Q ss_pred ceeeEEecccccceeEEEEECCCCCEEEEee-CCCeEEEEEccCCeeEEEEe---cceeeeeeeEEEECCCCcEEEEeeC
Q 040370 98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCG-KDSTVKLWEVSSGRLVKQYL---GATHTQLRFQAVFNDTEEFVLSIDE 173 (228)
Q Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
+........ ..+ ..++++|+++.++... .++.|.+.|........ -. ..........+.+.|++.++.+...
T Consensus 151 ~~~~~~~vG--~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~ 226 (381)
T COG3391 151 KVTATIPVG--NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVAND 226 (381)
T ss_pred eEEEEEecC--CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEec
Confidence 888875553 234 8899999999766555 78899999977655443 11 0112334467788999998777666
Q ss_pred CC--CeEEEEEcCCcceeEE-eecCCCCCcEEEEeCCCCcEEEEecC-CCCEEEee
Q 040370 174 PS--NEIVIWDALTAEKVAK-WSSNHIGAPRWIEHSPAEAAFITCGT-DRSVRFWK 225 (228)
Q Consensus 174 ~d--~~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd 225 (228)
.+ +.+...|..++..... ...+.. ....+..+|+|..+..... .+.+.+-|
T Consensus 227 ~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid 281 (381)
T COG3391 227 GSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVID 281 (381)
T ss_pred cCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEe
Confidence 44 6899999988877766 222333 5677889999998877743 35555544
No 324
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=5.3e-07 Score=71.80 Aligned_cols=71 Identities=20% Similarity=0.346 Sum_probs=59.3
Q ss_pred ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC
Q 040370 21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV 95 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~ 95 (228)
.+++++|+|..-.|+.|-.-|.+.+|...+.+...... .| ..+|..+.|||+|..++++..-|.|.+|...
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~---th-~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE---TH-PAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceeeeecc---CC-CCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 35679999999899999999999999987755433222 23 8899999999999999999999999999765
No 325
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.71 E-value=5.3e-07 Score=72.08 Aligned_cols=150 Identities=13% Similarity=0.174 Sum_probs=112.1
Q ss_pred ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec---------CCeEEE
Q 040370 21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK---------DGAIRL 91 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~v~i 91 (228)
.|+-++. +++.+.+|...|+|.+-|.++.+.+..+..+ .+.|.++.. .|+.|++|+. |..|+|
T Consensus 179 ~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aH----s~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkV 250 (1118)
T KOG1275|consen 179 GVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAH----SGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKV 250 (1118)
T ss_pred ceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeecc----ccceeeeec--cCCeEEEeecccccccccccchhhh
Confidence 4555554 6889999999999999999999888777654 667766555 6899999874 567899
Q ss_pred EeCCCCceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEE---ccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370 92 WDGVSANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWE---VSSGRLVKQYLGATHTQLRFQAVFNDTEEF 167 (228)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (228)
||++..+.+..+..+.. ..-+.|+| -...++.++..|...+-| +.+.. ...+..+.....+..+.+++++..
T Consensus 251 YDLRmmral~PI~~~~~---P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~-~~~~~v~p~~s~i~~fDiSsn~~a 326 (1118)
T KOG1275|consen 251 YDLRMMRALSPIQFPYG---PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP-AGVKMVNPNGSGISAFDISSNGDA 326 (1118)
T ss_pred hhhhhhhccCCcccccC---chhhhhcccccceEEEEecccceeeccccccCCCc-cceeEEccCCCcceeEEecCCCce
Confidence 99999888777766432 24567888 345788888999999999 33321 222222334555888999999999
Q ss_pred EEEeeCCCCeEEEEEc
Q 040370 168 VLSIDEPSNEIVIWDA 183 (228)
Q Consensus 168 ~~~~~~~d~~i~i~d~ 183 (228)
++.+.. +|.|.+|--
T Consensus 327 lafgd~-~g~v~~wa~ 341 (1118)
T KOG1275|consen 327 LAFGDH-EGHVNLWAD 341 (1118)
T ss_pred EEEecc-cCcEeeecC
Confidence 988666 799999973
No 326
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.71 E-value=2.4e-05 Score=59.25 Aligned_cols=201 Identities=17% Similarity=0.207 Sum_probs=115.4
Q ss_pred ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEe------e----------------------------------eccc
Q 040370 21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYL------S----------------------------------ANVP 60 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~------~----------------------------------~~~~ 60 (228)
.|+.+.|.++...|++|...|.|.||.....+... . ....
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999999999999999999999875432211 0 0000
Q ss_pred eeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEeccc------ccceeEEEEECC-----CC---CEEEE
Q 040370 61 EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAH------GTAEATSANFTK-----DQ---RFVLS 126 (228)
Q Consensus 61 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------~~~~i~~~~~~~-----~~---~~l~~ 126 (228)
... .++|++++.| +=.+++.|.++|.+.|.|+|....+..-.... ....++++.|.- |+ -.+++
T Consensus 83 ~~~-~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAK-QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred ecc-CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 012 5789999997 44489999999999999998877766543322 244677777762 33 46889
Q ss_pred eeCCCeEEEEEcc-C--CeeEEEEecc--eeeeeeeEEE-ECC---------------------CCcEEEEeeCCCCeEE
Q 040370 127 CGKDSTVKLWEVS-S--GRLVKQYLGA--THTQLRFQAV-FND---------------------TEEFVLSIDEPSNEIV 179 (228)
Q Consensus 127 ~~~d~~i~~wd~~-~--~~~~~~~~~~--~~~~~~~~~~-~~~---------------------~~~~~~~~~~~d~~i~ 179 (228)
|...|.+.+|.+. . +.....+... .+...+..+. ++. ...++++++ +..++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS--e~~ir 238 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS--ESDIR 238 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE---SSEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc--ccceE
Confidence 9999999999875 1 2222222111 1122222222 211 112444443 48999
Q ss_pred EEEcCCcceeEEeecCCCCCcEEEEeC-----CCCcEEEEecCCCCEEEeee
Q 040370 180 IWDALTAEKVAKWSSNHIGAPRWIEHS-----PAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 180 i~d~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~s~~~dg~i~vwd~ 226 (228)
++...+.+...+.. ...-....+.+- ..+..|++-..+|.|+++.+
T Consensus 239 v~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 239 VFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp EE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred EEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence 99998888777663 222223334442 35667888889999999976
No 327
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.67 E-value=1.6e-06 Score=68.42 Aligned_cols=152 Identities=17% Similarity=0.213 Sum_probs=111.1
Q ss_pred cceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCC------------CEEEEeeCCCeE
Q 040370 66 GAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQ------------RFVLSCGKDSTV 133 (228)
Q Consensus 66 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------~~l~~~~~d~~i 133 (228)
..-.++.|+|.| +|+-|+ ...|.+-|.++-+.++.+..| +..|+.+.|.|.. -.|+++...|.|
T Consensus 16 sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h--~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELH--QSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred ccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccC--ccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 336778999887 455555 468999999999999998876 7889999998732 257788888999
Q ss_pred EEEEccCCeeEEEEecceeeeeeeEEEECC---CC-cEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-C
Q 040370 134 KLWEVSSGRLVKQYLGATHTQLRFQAVFND---TE-EFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-A 208 (228)
Q Consensus 134 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~ 208 (228)
.+||...+..+..+.. +...+..++|-+ +. ..+++..+ ...+.+|+..+|+.+-.. ........++.+.| |
T Consensus 92 il~d~~~~s~~~~l~~--~~~~~qdl~W~~~rd~Srd~LlaIh~-ss~lvLwntdtG~k~Wk~-~ys~~iLs~f~~DPfd 167 (1062)
T KOG1912|consen 92 ILVDFVLASVINWLSH--SNDSVQDLCWVPARDDSRDVLLAIHG-SSTLVLWNTDTGEKFWKY-DYSHEILSCFRVDPFD 167 (1062)
T ss_pred EEEEehhhhhhhhhcC--CCcchhheeeeeccCcchheeEEecC-CcEEEEEEccCCceeecc-ccCCcceeeeeeCCCC
Confidence 9999998877777765 455556666543 34 34444444 589999999999998887 34445667788888 6
Q ss_pred CcEEEEecCCCCEEEee
Q 040370 209 EAAFITCGTDRSVRFWK 225 (228)
Q Consensus 209 ~~~l~s~~~dg~i~vwd 225 (228)
.+.+..-+..|.+.+-+
T Consensus 168 ~rh~~~l~s~g~vl~~~ 184 (1062)
T KOG1912|consen 168 SRHFCVLGSKGFVLSCK 184 (1062)
T ss_pred cceEEEEccCceEEEEe
Confidence 66666666666665543
No 328
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=8.9e-06 Score=64.95 Aligned_cols=182 Identities=12% Similarity=0.118 Sum_probs=114.2
Q ss_pred cCcc-eEEEEEeCCCCEEEEecCCC-----eEEEEEcccce------EE---eeeccceeeeccceeeEEeCCCCCeEEE
Q 040370 18 DTHN-VRSVSFHPSGDFLLAGTDHP-----IAHLYDVNTFQ------CY---LSANVPEISVNGAINQVRYSSTGGMYVT 82 (228)
Q Consensus 18 ~~~~-v~~~~~~~~~~~l~~~~~d~-----~i~vw~~~~~~------~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 82 (228)
+... |..+....+.++|++.+.|+ .++||+++.-+ +. .......+....++.+++.+.+-+.++.
T Consensus 63 ~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~ 142 (933)
T KOG2114|consen 63 YEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVC 142 (933)
T ss_pred cchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEE
Confidence 3444 44443333446777765543 59999987532 22 1111111111567889999999889999
Q ss_pred EecCCeEEEEeCC--CCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370 83 ASKDGAIRLWDGV--SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV 160 (228)
Q Consensus 83 ~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
|-.+|.|..+.-+ ..+-.+....+....+|+.+++..+++.++-+..-..|.+|.+.. +.+.......++....+..
T Consensus 143 Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~p~~~~ld~~G~~lnCss 221 (933)
T KOG2114|consen 143 GFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-RTPSLKVLDNNGISLNCSS 221 (933)
T ss_pred EecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecC-CCcceeeeccCCccceeee
Confidence 9999999998422 222223333444588999999999888733333456799999974 4422222233666777777
Q ss_pred ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEE
Q 040370 161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRW 202 (228)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~ 202 (228)
+++....++++++ ..+.+||....++...+..+|......
T Consensus 222 ~~~~t~qfIca~~--e~l~fY~sd~~~~cfaf~~g~kk~~~~ 261 (933)
T KOG2114|consen 222 FSDGTYQFICAGS--EFLYFYDSDGRGPCFAFEVGEKKEMLV 261 (933)
T ss_pred cCCCCccEEEecC--ceEEEEcCCCcceeeeecCCCeEEEEE
Confidence 8777765666555 789999988777777774466554433
No 329
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.65 E-value=2.6e-05 Score=59.61 Aligned_cols=182 Identities=12% Similarity=0.039 Sum_probs=109.8
Q ss_pred CEEEEecCCCeEEEEEcccceEEeeeccceee--e-ccceeeEEeCC--CCCeEEEEecCCeEEEEeCCCCceeeEEecc
Q 040370 32 DFLLAGTDHPIAHLYDVNTFQCYLSANVPEIS--V-NGAINQVRYSS--TGGMYVTASKDGAIRLWDGVSANCVRSIVGA 106 (228)
Q Consensus 32 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~--~-~~~i~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 106 (228)
..++.++.+|.+...|.++|+........... . ......+.-+| .+..++.++.+|.+.-+|..+++.+-.....
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~ 285 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG 285 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC
Confidence 35666777888989999888765544321100 0 00111122233 3456777888999999999999876554332
Q ss_pred cccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCc
Q 040370 107 HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA 186 (228)
Q Consensus 107 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 186 (228)
. ...+. ..+..++.++.++.+..+|..+++.+-........ ....... .+..+++... ||.+...|..+|
T Consensus 286 ---~-~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-~~~sp~v--~~g~l~v~~~-~G~l~~ld~~tG 355 (394)
T PRK11138 286 ---S-VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHR-LLTAPVL--YNGYLVVGDS-EGYLHWINREDG 355 (394)
T ss_pred ---C-ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCC-cccCCEE--ECCEEEEEeC-CCEEEEEECCCC
Confidence 1 11121 24667888889999999999998775543211111 1111111 2455555444 799999999999
Q ss_pred ceeEEeecCCCCCcEE-EEeCCCCcEEEEecCCCCEEEeee
Q 040370 187 EKVAKWSSNHIGAPRW-IEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 187 ~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
+.+.+.... ...+.+ ..+ .+..|+.++.||.+..+++
T Consensus 356 ~~~~~~~~~-~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 356 RFVAQQKVD-SSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CEEEEEEcC-CCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 988776332 222222 122 3446888899999988775
No 330
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.64 E-value=1.1e-05 Score=61.74 Aligned_cols=140 Identities=13% Similarity=0.122 Sum_probs=79.5
Q ss_pred ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeE
Q 040370 65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLV 144 (228)
Q Consensus 65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 144 (228)
.-....+.++|+|+.++.+ .||...|+.....+... .+......|.+.++ +|+-...++|.++.--+.+..
T Consensus 32 ~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-------~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-------FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-------EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT
T ss_pred CcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-------cCceeEEEEecCcc-EEEEECCCeEEEEEcCccccc
Confidence 4457889999999988884 57888888743333322 22335678888554 666666888999742222332
Q ss_pred EEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370 145 KQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224 (228)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 224 (228)
..+.... .+..+. . |..+...+. +.|.+||+.+++.+.++. -.+|..+.|++++.+++..+.+ .+.+.
T Consensus 103 k~i~~~~---~~~~If-~--G~LL~~~~~--~~i~~yDw~~~~~i~~i~---v~~vk~V~Ws~~g~~val~t~~-~i~il 170 (443)
T PF04053_consen 103 KSIKLPF---SVEKIF-G--GNLLGVKSS--DFICFYDWETGKLIRRID---VSAVKYVIWSDDGELVALVTKD-SIYIL 170 (443)
T ss_dssp -----SS----EEEEE----SSSEEEEET--TEEEEE-TTT--EEEEES---S-E-EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred eEEcCCc---ccceEE-c--CcEEEEECC--CCEEEEEhhHcceeeEEe---cCCCcEEEEECCCCEEEEEeCC-eEEEE
Confidence 2343221 122222 2 777777654 689999999999999882 2348999999999999998866 46665
Q ss_pred e
Q 040370 225 K 225 (228)
Q Consensus 225 d 225 (228)
+
T Consensus 171 ~ 171 (443)
T PF04053_consen 171 K 171 (443)
T ss_dssp E
T ss_pred E
Confidence 5
No 331
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.62 E-value=1.5e-06 Score=67.61 Aligned_cols=120 Identities=16% Similarity=0.108 Sum_probs=90.9
Q ss_pred cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA 97 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 97 (228)
+...|.--+++..+++++.|+.-|.+++|+-..++....... +. .+.+..+..+++..++|.|+..|.|.++-++.+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~--~~-~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~ 108 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE--GA-TGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE 108 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhccccc--Cc-cceEEEEEecchhHhhhhhcCCceEEeehhhcc
Confidence 445566566677899999999999999999887764332221 12 456667788999999999999999999988764
Q ss_pred ceeeEE-e---cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC
Q 040370 98 NCVRSI-V---GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS 140 (228)
Q Consensus 98 ~~~~~~-~---~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 140 (228)
.+.... . ...++..|++++|++++..+++|...|.|..-.+..
T Consensus 109 ~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 109 LPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 332211 1 112378999999999999999999999999888776
No 332
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=5.6e-07 Score=69.12 Aligned_cols=96 Identities=17% Similarity=0.303 Sum_probs=77.9
Q ss_pred cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeecccee-eEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAIN-QVRYSSTGGMYVTASKDGAIRLWDGVS 96 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~v~iwd~~~ 96 (228)
-...|.-+.|+|.-..+|.+..+|.|.+..+. .+.+..+..+ ...++ +++|.|||+.++.|-.||+|++-|+++
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p----~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIP----GENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCC----CCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence 35678889999999999999999999999988 5555666544 44455 999999999999999999999999999
Q ss_pred CceeeEEecccccceeEEEEECC
Q 040370 97 ANCVRSIVGAHGTAEATSANFTK 119 (228)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~ 119 (228)
+..+....... ...|.++.|.+
T Consensus 94 ~~~l~~~~~s~-e~~is~~~w~~ 115 (665)
T KOG4640|consen 94 GGRLVSFLFSV-ETDISKGIWDR 115 (665)
T ss_pred CCceecccccc-ccchheeeccc
Confidence 98877643222 56778888863
No 333
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.59 E-value=6.4e-05 Score=52.30 Aligned_cols=123 Identities=12% Similarity=0.047 Sum_probs=88.8
Q ss_pred CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccc
Q 040370 31 GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTA 110 (228)
Q Consensus 31 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 110 (228)
..+++.|+..+.+.--|..+|+....... ..+|.+-+.- -|++++.|...|.+++.+.++|+....+.... ..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-----g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~v 95 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-----GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TV 95 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-----CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh-hh
Confidence 45677888899999999999987765443 3334333322 46789999999999999999998888776642 22
Q ss_pred eeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECC
Q 040370 111 EATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFND 163 (228)
Q Consensus 111 ~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (228)
.+ .....+++..+..|+.|++.+..|.++...+.+.+- ........+..|
T Consensus 96 k~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc--gG~~f~sP~i~~ 145 (354)
T KOG4649|consen 96 KV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC--GGGTFVSPVIAP 145 (354)
T ss_pred cc-ceEEcCCCceEEEecCCCcEEEecccccceEEeccc--CCceeccceecC
Confidence 22 244577899999999999999999999888877654 223333444455
No 334
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.57 E-value=6e-05 Score=55.95 Aligned_cols=179 Identities=12% Similarity=0.080 Sum_probs=104.5
Q ss_pred CeEEEEEcccceEEeeeccceeeeccceeeEEeCCC----CCeEEEEec----------CCeEEEEeCCCC----ceeeE
Q 040370 41 PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST----GGMYVTASK----------DGAIRLWDGVSA----NCVRS 102 (228)
Q Consensus 41 ~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~----------dg~v~iwd~~~~----~~~~~ 102 (228)
..|++.|..+.+.+.........+...+..+.+..+ ..+++.|.. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 367888888877766655544222223334445432 457776653 289999999884 23333
Q ss_pred EecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe-eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEE
Q 040370 103 IVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR-LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIW 181 (228)
Q Consensus 103 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~ 181 (228)
+......++|++++-- ++. |+.+ .++.|.+|++...+ ....-... ....+.++. ..+++++++... ..+.++
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~-~~~~i~sl~--~~~~~I~vgD~~-~sv~~~ 154 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYD-SPFYITSLS--VFKNYILVGDAM-KSVSLL 154 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE--BSSSEEEEE--EETTEEEEEESS-SSEEEE
T ss_pred EEEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheec-ceEEEEEEe--ccccEEEEEEcc-cCEEEE
Confidence 3222336788888755 344 4444 35789999998877 33332221 222333433 336688887664 667766
Q ss_pred EcCC-cceeEEe-ecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 182 DALT-AEKVAKW-SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 182 d~~~-~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
..+. ...+..+ .......++++.|-++++.++.+..+|.+.++..
T Consensus 155 ~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~ 201 (321)
T PF03178_consen 155 RYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRY 201 (321)
T ss_dssp EEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred EEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence 4443 2222222 2234556888888866678999999999998865
No 335
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.3e-06 Score=63.67 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=64.6
Q ss_pred ccceeeEEeCCCCC-eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCC-CCEEEEeeCCCeEEEEEccCCe
Q 040370 65 NGAINQVRYSSTGG-MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD-QRFVLSCGKDSTVKLWEVSSGR 142 (228)
Q Consensus 65 ~~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~ 142 (228)
...|..++|+|..+ ++..++.+..|+|.|+++......+.. ...+++++|.-+ .++++.|...|.|.+||++..+
T Consensus 193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a---~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA---YNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred chhhhhhccCccccceeeeeccCceEEEEecccceeeeheec---cCCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 67899999999766 788999999999999999988888776 468899999885 4678889999999999999754
No 336
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.55 E-value=4.4e-05 Score=58.37 Aligned_cols=183 Identities=8% Similarity=0.012 Sum_probs=101.6
Q ss_pred CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC--CCCeEEEEecCCeEEEEeCCCCceeeEEeccccc
Q 040370 32 DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS--TGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGT 109 (228)
Q Consensus 32 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 109 (228)
..++.++.++.+..+|.++|+.+........... ... .-+| .+..++.++.+|.+...|..+++...........
T Consensus 161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~--~~~-~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~ 237 (394)
T PRK11138 161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT--LRG-ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPT 237 (394)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeecCCCCccc--ccC-CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCC
Confidence 3455566677777777777776655543210000 000 0111 1235667778899999999988876554321100
Q ss_pred --c---eeEEEEECC--CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEE
Q 040370 110 --A---EATSANFTK--DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWD 182 (228)
Q Consensus 110 --~---~i~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d 182 (228)
. ....+..+| .+..++.++.++.+..+|..+++.+-+..... ...+. ..+..+++... ++.+..+|
T Consensus 238 ~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~----~~~~~--~~~~~vy~~~~-~g~l~ald 310 (394)
T PRK11138 238 GATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS----VNDFA--VDGGRIYLVDQ-NDRVYALD 310 (394)
T ss_pred CccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC----ccCcE--EECCEEEEEcC-CCeEEEEE
Confidence 0 011111223 35567778889999999999998765543211 11111 13455555554 69999999
Q ss_pred cCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 183 ALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
..+++.+-...........+... .+.+|+.++.||.+.+.|.
T Consensus 311 ~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 311 TRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred CCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEEC
Confidence 99988765432111111111111 2456677778888877664
No 337
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=9.3e-07 Score=70.48 Aligned_cols=119 Identities=9% Similarity=0.137 Sum_probs=89.1
Q ss_pred EEeecCcceEEEEEeCCCCEEEEec----CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370 14 RVIQDTHNVRSVSFHPSGDFLLAGT----DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI 89 (228)
Q Consensus 14 ~~~~~~~~v~~~~~~~~~~~l~~~~----~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 89 (228)
++......-+-..|+|...+||+++ ..|.|.||- ++|++...... .-.+++++|+|..-.|+.|-.-|.+
T Consensus 10 E~~Dsdavsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-----P~hatSLCWHpe~~vLa~gwe~g~~ 83 (1416)
T KOG3617|consen 10 EFLDSDAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-----PVHATSLCWHPEEFVLAQGWEMGVS 83 (1416)
T ss_pred ecccccccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-----ceehhhhccChHHHHHhhcccccee
Confidence 3333344445578999999998775 467888884 55664333322 2235779999998889999999999
Q ss_pred EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC
Q 040370 90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS 140 (228)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 140 (228)
.+|...+.+.-.....| +.+|..+.|+++|..++++..-|.+.+|....
T Consensus 84 ~v~~~~~~e~htv~~th--~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 84 DVQKTNTTETHTVVETH--PAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred EEEecCCceeeeeccCC--CCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 99997765544444333 88999999999999999999999999998763
No 338
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.49 E-value=1.4e-05 Score=61.05 Aligned_cols=145 Identities=11% Similarity=0.070 Sum_probs=94.7
Q ss_pred ccceeeEEeCCCCCeEEEEe---cC-CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEE-eeCCCe--EEEEE
Q 040370 65 NGAINQVRYSSTGGMYVTAS---KD-GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS-CGKDST--VKLWE 137 (228)
Q Consensus 65 ~~~i~~~~~~~~~~~l~~~~---~d-g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~--i~~wd 137 (228)
...+..-+|+|+++.++..+ .. ..+.++|+++++....... ...-...+|+|||+.|+- ...||. |+++|
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~---~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~d 268 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF---NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMD 268 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc---CCccCCccCCCCCCEEEEEECCCCCccEEEEc
Confidence 44566778999988665442 22 4699999999887766653 334456789999987664 445554 77788
Q ss_pred ccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCe--EEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEe
Q 040370 138 VSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNE--IVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITC 215 (228)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 215 (228)
+...+..+ +.. .........|+|+|++++.++...|. |.+++...+...... ...+.-..-.|+|+|++++..
T Consensus 269 l~~~~~~~-Lt~--~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT--~~~~~~~~p~~SpdG~~i~~~ 343 (425)
T COG0823 269 LDGKNLPR-LTN--GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT--FSGGGNSNPVWSPDGDKIVFE 343 (425)
T ss_pred CCCCccee-ccc--CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee--ccCCCCcCccCCCCCCEEEEE
Confidence 87766333 332 23333478899999999888776665 555565555442222 222222267899999998877
Q ss_pred cC
Q 040370 216 GT 217 (228)
Q Consensus 216 ~~ 217 (228)
+.
T Consensus 344 ~~ 345 (425)
T COG0823 344 SS 345 (425)
T ss_pred ec
Confidence 74
No 339
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.49 E-value=8.4e-05 Score=61.82 Aligned_cols=157 Identities=13% Similarity=0.143 Sum_probs=105.9
Q ss_pred ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEc----cC
Q 040370 65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV----SS 140 (228)
Q Consensus 65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~----~~ 140 (228)
...|.++.|..+.+.++.+..+|.|.+-|.++......-.. ...|.+++|+||++.++..+.++++.+-+- -.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~v---d~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNV---DNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeec---cCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence 45899999999999999999999999998877654332222 567999999999999998888887766432 11
Q ss_pred C-------------------eeEEEEecce-------------------eeeeeeEEEECCCCcEEEEee---CCC-CeE
Q 040370 141 G-------------------RLVKQYLGAT-------------------HTQLRFQAVFNDTEEFVLSID---EPS-NEI 178 (228)
Q Consensus 141 ~-------------------~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~---~~d-~~i 178 (228)
. +.-..+.+.. ....-..+.|..+|.+++++. ..+ +.|
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 1 1111121100 011224588999999988743 223 799
Q ss_pred EEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEec---CCCCEEEeee
Q 040370 179 VIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCG---TDRSVRFWKE 226 (228)
Q Consensus 179 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~dg~i~vwd~ 226 (228)
++||.. |..-..- ....+.-.+++|-|.|..+++-. .|+.|.+|..
T Consensus 225 rV~drE-g~Lns~s-e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr 273 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTS-EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER 273 (1265)
T ss_pred EEeccc-chhhccc-CcccccccceeecCCCCeEeeeeecCCCCcEEEEec
Confidence 999965 4333222 33445556799999999988754 4566777753
No 340
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.48 E-value=1.7e-08 Score=77.35 Aligned_cols=164 Identities=14% Similarity=0.190 Sum_probs=108.2
Q ss_pred eecCcceEEEEEeC-CCCEEEEec----CCCeEEEEEcccc--eEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe
Q 040370 16 IQDTHNVRSVSFHP-SGDFLLAGT----DHPIAHLYDVNTF--QCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA 88 (228)
Q Consensus 16 ~~~~~~v~~~~~~~-~~~~l~~~~----~d~~i~vw~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 88 (228)
.++..+.++++|++ |.+.||+|- .|..+.|||+.++ .+......... ......+++|..+.+.+++|.....
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~-~l~gqns~cwlrd~klvlaGm~sr~ 177 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSS-TLDGQNSVCWLRDTKLVLAGMTSRS 177 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccc-cccCccccccccCcchhhcccccch
Confidence 45678899999999 778888774 3678999999886 22222222111 1445668899988899999999999
Q ss_pred EEEEeCCCCc-eeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEE-ccCCee-EEEEec--ceeeeeeeEEEEC
Q 040370 89 IRLWDGVSAN-CVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWE-VSSGRL-VKQYLG--ATHTQLRFQAVFN 162 (228)
Q Consensus 89 v~iwd~~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd-~~~~~~-~~~~~~--~~~~~~~~~~~~~ 162 (228)
++++|++... ....+. ...+..+...| .++|+++-. |+.|.+|| .++-+. +..+.. .........++|.
T Consensus 178 ~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ayc 252 (783)
T KOG1008|consen 178 VHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYC 252 (783)
T ss_pred hhhhhhhhhhhhhhhhh----hhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEec
Confidence 9999998432 222222 33566777888 777777665 99999999 443222 211111 1123357788888
Q ss_pred CCCcEEEEee-CCCCeEEEEEcCC
Q 040370 163 DTEEFVLSID-EPSNEIVIWDALT 185 (228)
Q Consensus 163 ~~~~~~~~~~-~~d~~i~i~d~~~ 185 (228)
|...-++++. .+.++|++||+..
T Consensus 253 Ptrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 253 PTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cCCcchhhhhccCcceEEEecccc
Confidence 8765444433 3458899999853
No 341
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.40 E-value=8.7e-05 Score=44.89 Aligned_cols=100 Identities=15% Similarity=0.238 Sum_probs=67.7
Q ss_pred eEEEEEeC-CC---CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC
Q 040370 22 VRSVSFHP-SG---DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA 97 (228)
Q Consensus 22 v~~~~~~~-~~---~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 97 (228)
|+++++.. ++ +.|++|+.|..|++|+-+. .+..... .+.|+++.-... ..|+.+..+|+|-+|+- .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~e-----~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEITE-----TDKVTSLCSLGG-GRFAYALANGTVGVYDR--S 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEEec-----ccceEEEEEcCC-CEEEEEecCCEEEEEeC--c
Confidence 67777765 32 6899999999999998653 3333332 567888887765 56999999999999985 2
Q ss_pred ceeeEEecccccceeEEEEECC-C--C-CEEEEeeCCCeEE
Q 040370 98 NCVRSIVGAHGTAEATSANFTK-D--Q-RFVLSCGKDSTVK 134 (228)
Q Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~-~--~-~~l~~~~~d~~i~ 134 (228)
+.+...+. +..+.++.+.. + | ..|++|-.+|.|-
T Consensus 72 ~RlWRiKS---K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 QRLWRIKS---KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ceeeeecc---CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 33333333 22355554443 3 2 3689999998774
No 342
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.37 E-value=8.2e-05 Score=60.55 Aligned_cols=144 Identities=5% Similarity=-0.067 Sum_probs=91.3
Q ss_pred CeEEEE-ecCCeEEEEeCCCCceeeEEecccccceeEEEEECC-----CCCEEEEeeCCCeEEEEEccCCe-eEEEEecc
Q 040370 78 GMYVTA-SKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-----DQRFVLSCGKDSTVKLWEVSSGR-LVKQYLGA 150 (228)
Q Consensus 78 ~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~ 150 (228)
++|+.- .....|+-.|++.|+.+..+..+. ..+|..++-.. +....+.|-.+..+..||.|-.. .+..-..+
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~-~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHD-DIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCC-CcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 344433 345789999999999999998864 33455443221 13345677788899999998642 22111111
Q ss_pred --eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 151 --THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 151 --~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
.......+++...+ .+++++ +.+|.||+|| +.+....+...+-..+|..|..+.||+++++.+ +..+.+.+.
T Consensus 573 ~Y~~~~~Fs~~aTt~~-G~iavg-s~~G~IRLyd-~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 573 QYSSKNNFSCFATTED-GYIAVG-SNKGDIRLYD-RLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccccCCCceEEEecCC-ceEEEE-eCCCcEEeec-ccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 12223344444444 445553 4479999999 455555555567788999999999999887665 445666654
No 343
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.37 E-value=0.00045 Score=52.49 Aligned_cols=197 Identities=12% Similarity=0.103 Sum_probs=104.5
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccce----eeeccceeeEEeCC-----CC---CeEEEEe
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE----ISVNGAINQVRYSS-----TG---GMYVTAS 84 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~-----~~---~~l~~~~ 84 (228)
...++|++++.| |=-++|.|..+|.+.|.|++....+....... ......++++.|.- |+ -.+++|.
T Consensus 84 ~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 84 AKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp --S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred ccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 457899999997 55699999999999999998877665533322 11145688888862 22 3788999
Q ss_pred cCCeEEEEeCCC---CceeeEEecc--cccceeEEEE-ECCC-C-------------------CEEEEeeCCCeEEEEEc
Q 040370 85 KDGAIRLWDGVS---ANCVRSIVGA--HGTAEATSAN-FTKD-Q-------------------RFVLSCGKDSTVKLWEV 138 (228)
Q Consensus 85 ~dg~v~iwd~~~---~~~~~~~~~~--~~~~~i~~~~-~~~~-~-------------------~~l~~~~~d~~i~~wd~ 138 (228)
..|.+.+|.+.- +.....+... .+..++..+. ++.+ + +-++....+..++++..
T Consensus 163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~ 242 (395)
T PF08596_consen 163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKP 242 (395)
T ss_dssp TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-T
T ss_pred CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeC
Confidence 999999998751 2111111111 1134444433 3222 0 12344445678999999
Q ss_pred cCCeeEEEEecceeeeeeeEEEEC-----CCCcEEEEeeCCCCeEEEEEcCCcceeEEeecC---CCCCcEEEEeCCCCc
Q 040370 139 SSGRLVKQYLGATHTQLRFQAVFN-----DTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN---HIGAPRWIEHSPAEA 210 (228)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~ 210 (228)
.+.+...+... .......+.+- ..+..+++.. .+|.+++|.+...+.+...... ....+....++++|.
T Consensus 243 ~~~k~~~K~~~--~~~~~~~~~vv~~~~~~~~~~Lv~l~-~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gd 319 (395)
T PF08596_consen 243 PKSKGAHKSFD--DPFLCSSASVVPTISRNGGYCLVCLF-NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGD 319 (395)
T ss_dssp T---EEEEE-S--S-EEEEEEEEEEEE-EEEEEEEEEEE-TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-
T ss_pred CCCcccceeec--cccccceEEEEeecccCCceEEEEEE-CCCcEEEEECCCchHhhcccCCCccccccccccEECCCCC
Confidence 88777665542 22222233332 2333444444 4799999999998888776322 122345567788888
Q ss_pred EEEEecC
Q 040370 211 AFITCGT 217 (228)
Q Consensus 211 ~l~s~~~ 217 (228)
.++-.|.
T Consensus 320 i~~~~gp 326 (395)
T PF08596_consen 320 IFYWTGP 326 (395)
T ss_dssp EEEE-SS
T ss_pred EEEEeCc
Confidence 7766654
No 344
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.36 E-value=0.00042 Score=52.22 Aligned_cols=193 Identities=13% Similarity=0.109 Sum_probs=106.8
Q ss_pred eCCCCEEEEec---------CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370 28 HPSGDFLLAGT---------DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN 98 (228)
Q Consensus 28 ~~~~~~l~~~~---------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 98 (228)
|||+++++... ..+.+.++|+++++....... ...+....|+|+|+.++... ++.|.+.+..+++
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-----~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~ 74 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-----PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQ 74 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-----ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-----ccccccceeecCCCeeEEEe-cCceEEEECCCCC
Confidence 57787777632 246789999999775443332 46788999999999888775 6789999987774
Q ss_pred eeeEEecccc---------------cceeEEEEECCCCCEEEEeeCC-Ce------------------------------
Q 040370 99 CVRSIVGAHG---------------TAEATSANFTKDQRFVLSCGKD-ST------------------------------ 132 (228)
Q Consensus 99 ~~~~~~~~~~---------------~~~i~~~~~~~~~~~l~~~~~d-~~------------------------------ 132 (228)
..+....... -..-..+.|+||+++|+....| ..
T Consensus 75 ~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~ 154 (353)
T PF00930_consen 75 ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDP 154 (353)
T ss_dssp EEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS-
T ss_pred eEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCc
Confidence 4332221100 0123568899999988866432 11
Q ss_pred -----EEEEEccCCeeEEEEec---ceeeeeeeEEEECCCCc-EEEEeeCCC---CeEEEEEcCCcceeEEeecCCCCC-
Q 040370 133 -----VKLWEVSSGRLVKQYLG---ATHTQLRFQAVFNDTEE-FVLSIDEPS---NEIVIWDALTAEKVAKWSSNHIGA- 199 (228)
Q Consensus 133 -----i~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~- 199 (228)
+.++|+.+++....-.. ......+..+.|.+++. .++.....+ ..+.+.|..++...........+.
T Consensus 155 np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv 234 (353)
T PF00930_consen 155 NPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWV 234 (353)
T ss_dssp --EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSS
T ss_pred CCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcce
Confidence 33344444432211100 11344566778888887 433333222 346667777765543332222222
Q ss_pred --cEEEEeC-CC-CcEEEEecCCCCEEEeee
Q 040370 200 --PRWIEHS-PA-EAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 200 --v~~~~~~-~~-~~~l~s~~~dg~i~vwd~ 226 (228)
-....+. ++ +.+|.....||--.|+-+
T Consensus 235 ~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 235 DVYDPPHFLGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp SSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred eeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence 2345554 54 445555557776666543
No 345
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=0.00056 Score=52.04 Aligned_cols=164 Identities=13% Similarity=0.147 Sum_probs=118.1
Q ss_pred cceEEEEEeCCCCEEEEecC---CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe-cCCeEEEEeCC
Q 040370 20 HNVRSVSFHPSGDFLLAGTD---HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS-KDGAIRLWDGV 95 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~iwd~~ 95 (228)
.....++++|+++.+.++.. ++.+.+.|..+.+........ ..+ ..+++.|+|+.++... .++.|.+.|.+
T Consensus 116 ~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG----~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~ 190 (381)
T COG3391 116 LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG----NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTS 190 (381)
T ss_pred cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC----CCc-ceEEECCCCCeEEEEecCCCeEEEEeCC
Confidence 36678999999988876654 688999998888876663321 223 8899999999666555 78999999977
Q ss_pred CCceee-E----EecccccceeEEEEECCCCCEEEEeeCC---CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370 96 SANCVR-S----IVGAHGTAEATSANFTKDQRFVLSCGKD---STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF 167 (228)
Q Consensus 96 ~~~~~~-~----~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (228)
.....+ . ... ......+.++|+++++...... +.+...|..++.....-...... ....+...|++.+
T Consensus 191 ~~~v~~~~~~~~~~~---~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~ 266 (381)
T COG3391 191 GNSVVRGSVGSLVGV---GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKA 266 (381)
T ss_pred Ccceecccccccccc---CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCE
Confidence 665543 1 111 2334678899999976665544 58999999887766552222122 4567888999999
Q ss_pred EEEeeCCCCeEEEEEcCCcceeEEe
Q 040370 168 VLSIDEPSNEIVIWDALTAEKVAKW 192 (228)
Q Consensus 168 ~~~~~~~d~~i~i~d~~~~~~~~~~ 192 (228)
+.+.....+.+.+.|..+.......
T Consensus 267 ~yv~~~~~~~V~vid~~~~~v~~~~ 291 (381)
T COG3391 267 AYVANSQGGTVSVIDGATDRVVKTG 291 (381)
T ss_pred EEEEecCCCeEEEEeCCCCceeeee
Confidence 9888666689999998887776665
No 346
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=6.3e-07 Score=71.79 Aligned_cols=149 Identities=16% Similarity=0.267 Sum_probs=109.1
Q ss_pred ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCC--eEEEEEccC-C
Q 040370 65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS--TVKLWEVSS-G 141 (228)
Q Consensus 65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~~wd~~~-~ 141 (228)
....+|++|+-+.++|+.|+..|.|+++++.+|........| ...++.+.-+.+|..+++.+.-. -..+|++.+ +
T Consensus 1101 ~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH--~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCH--QSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred ccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccc--ccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence 677899999999999999999999999999999988888887 78899998888998877665443 467899864 3
Q ss_pred eeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecC---CCCCcEEEEeCCCCcEEEEecCC
Q 040370 142 RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN---HIGAPRWIEHSPAEAAFITCGTD 218 (228)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d 218 (228)
...+.+.. ..++.|+.....-+.+.. .....+||+.++.++.++..+ ....-+...|+|+..+++ .|
T Consensus 1179 ~~~Hsf~e------d~~vkFsn~~q~r~~gt~-~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---nd 1248 (1516)
T KOG1832|consen 1179 GPRHSFDE------DKAVKFSNSLQFRALGTE-ADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---ND 1248 (1516)
T ss_pred Cccccccc------cceeehhhhHHHHHhccc-ccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eC
Confidence 34444432 235566655444444344 367889999999887774332 222346788999988776 45
Q ss_pred CCEEEeeec
Q 040370 219 RSVRFWKEI 227 (228)
Q Consensus 219 g~i~vwd~~ 227 (228)
|. +||++
T Consensus 1249 Gv--LWDvR 1255 (1516)
T KOG1832|consen 1249 GV--LWDVR 1255 (1516)
T ss_pred ce--eeeec
Confidence 53 78865
No 347
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.33 E-value=0.00025 Score=56.65 Aligned_cols=184 Identities=10% Similarity=0.063 Sum_probs=100.6
Q ss_pred cceEEEEEeCCCCEEEEec------CCC--eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC-----
Q 040370 20 HNVRSVSFHPSGDFLLAGT------DHP--IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD----- 86 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~------~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----- 86 (228)
..+...+++|+|+.++... .|. .|.+++.. +.. ..... ....+.-.|+|+|+.+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-----g~~~t~PsWspDG~~lw~v~dg~~~~~ 422 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-----GHSLTRPSWSLDADAVWVVVDGNTVVR 422 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-----CCCCCCceECCCCCceEEEecCcceEE
Confidence 4677889999999887654 243 44444542 222 22211 2247788999998877776532
Q ss_pred -------CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEE---EEccCCeeEEEEe-----cce
Q 040370 87 -------GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKL---WEVSSGRLVKQYL-----GAT 151 (228)
Q Consensus 87 -------g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~---wd~~~~~~~~~~~-----~~~ 151 (228)
+.+.+.+++.++... .....|..+.|+|||..++... ++.|.+ -....|. ..+. ...
T Consensus 423 v~~~~~~gql~~~~vd~ge~~~-----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~ 494 (591)
T PRK13616 423 VIRDPATGQLARTPVDASAVAS-----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPREVGPG 494 (591)
T ss_pred EeccCCCceEEEEeccCchhhh-----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEEeecc
Confidence 223333333333222 1145699999999999888765 467777 4433443 1121 111
Q ss_pred eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee-cCCCCCcEEEEeCCCCcEEEEecCCCCE
Q 040370 152 HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS-SNHIGAPRWIEHSPAEAAFITCGTDRSV 221 (228)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i 221 (228)
.......+.|.+++..++.....+..+...++. |.....+. .....++..++-+++ .++....+|.+
T Consensus 495 l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 495 LGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred cCCccccceEecCCEEEEEecCCCCceEEEecC-CccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 222346788999998665544333334444443 22221211 123567777877763 34444556544
No 348
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=98.33 E-value=0.00059 Score=51.47 Aligned_cols=208 Identities=13% Similarity=0.105 Sum_probs=101.3
Q ss_pred cceEEEEEe-----------CCCCEEEEec-CCCeEEEEEcccc----eEEeeeccceeee---ccceeeEEeCCCCCeE
Q 040370 20 HNVRSVSFH-----------PSGDFLLAGT-DHPIAHLYDVNTF----QCYLSANVPEISV---NGAINQVRYSSTGGMY 80 (228)
Q Consensus 20 ~~v~~~~~~-----------~~~~~l~~~~-~d~~i~vw~~~~~----~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l 80 (228)
.+....-|+ .+.++|+..+ ..+.|.|.|+.+. +..+......... -.....+..-|+|+.+
T Consensus 65 DElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~im 144 (461)
T PF05694_consen 65 DELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIM 144 (461)
T ss_dssp --B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EE
T ss_pred CccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEE
Confidence 456666665 2456666655 7789999998742 3333332211110 1223344556789888
Q ss_pred EEEec------CCeEEEEeCCCCceeeEEecccc-cceeEEEEECCCCCEEEEee--------------------CCCeE
Q 040370 81 VTASK------DGAIRLWDGVSANCVRSIVGAHG-TAEATSANFTKDQRFVLSCG--------------------KDSTV 133 (228)
Q Consensus 81 ~~~~~------dg~v~iwd~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~--------------------~d~~i 133 (228)
+++-. -|-+.+.|-++.+.......... ...-..+.+.|..+.++|.. ...++
T Consensus 145 IS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l 224 (461)
T PF05694_consen 145 ISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSL 224 (461)
T ss_dssp EEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EE
T ss_pred EEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeE
Confidence 87632 25688889888777776655321 33446788888888888775 34689
Q ss_pred EEEEccCCeeEEEEecceeeeeeeEEEE--CCCCcEEEEeeCCCCeEEEEEc-CCcc----eeEEeec----CC------
Q 040370 134 KLWEVSSGRLVKQYLGATHTQLRFQAVF--NDTEEFVLSIDEPSNEIVIWDA-LTAE----KVAKWSS----NH------ 196 (228)
Q Consensus 134 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~i~i~d~-~~~~----~~~~~~~----~~------ 196 (228)
.+||+.+.+.++++...........+.| .|+..+-++++.-..+|..|-- ..++ .+..+.. +-
T Consensus 225 ~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml 304 (461)
T PF05694_consen 225 HVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEML 304 (461)
T ss_dssp EEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGG
T ss_pred EEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccc
Confidence 9999999999999876544445555555 5666666655544466665543 3332 1222211 00
Q ss_pred ------CCCcEEEEeCCCCcEEEEec-CCCCEEEeeec
Q 040370 197 ------IGAPRWIEHSPAEAAFITCG-TDRSVRFWKEI 227 (228)
Q Consensus 197 ------~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~ 227 (228)
..-|+.|..|.|.++|..+. .+|.|+.||+.
T Consensus 305 ~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 305 KPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp GGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred cccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 24578999999999887766 68999999974
No 349
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.31 E-value=0.00015 Score=43.84 Aligned_cols=104 Identities=15% Similarity=0.091 Sum_probs=64.3
Q ss_pred eeeEEeCC---CC-CeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee
Q 040370 68 INQVRYSS---TG-GMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL 143 (228)
Q Consensus 68 i~~~~~~~---~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 143 (228)
|+++++.. +| +.|++|+.|..|++|+- .+.+.++.. ...+.++.-... ..++.+..+|+|-+|+-. +.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e---~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE---TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QR 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec---ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ce
Confidence 45565543 32 58999999999999974 466666665 557777776655 669999999999999853 33
Q ss_pred EEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEE
Q 040370 144 VKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIV 179 (228)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 179 (228)
+-..+...............+|..-+.+|-.+|.|-
T Consensus 74 lWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 333333222222222233344444444454467764
No 350
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.30 E-value=0.00063 Score=50.60 Aligned_cols=197 Identities=12% Similarity=0.115 Sum_probs=111.1
Q ss_pred cCcceEEEEEeC---C----CCEEEEecC----------CCeEEEEEcccc----eEEeeeccceeeeccceeeEEeCCC
Q 040370 18 DTHNVRSVSFHP---S----GDFLLAGTD----------HPIAHLYDVNTF----QCYLSANVPEISVNGAINQVRYSST 76 (228)
Q Consensus 18 ~~~~v~~~~~~~---~----~~~l~~~~~----------d~~i~vw~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~ 76 (228)
..+.+.+++.-. + ..+|++|+. .|.|.++++... ..+... ......++|++++-- +
T Consensus 22 ~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i--~~~~~~g~V~ai~~~-~ 98 (321)
T PF03178_consen 22 PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI--HSTEVKGPVTAICSF-N 98 (321)
T ss_dssp TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE--EEEEESS-EEEEEEE-T
T ss_pred CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE--EEEeecCcceEhhhh-C
Confidence 344555555433 2 567777653 289999999984 111111 112227889888766 3
Q ss_pred CCeEEEEecCCeEEEEeCCCCc-eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC-CeeEEEEecceeee
Q 040370 77 GGMYVTASKDGAIRLWDGVSAN-CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS-GRLVKQYLGATHTQ 154 (228)
Q Consensus 77 ~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~ 154 (228)
+. ++.+. ++.|.+|++...+ ....-..+ ....+.++... +++++.|..-..+.++..+. ++.+..+.......
T Consensus 99 ~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~-~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~ 173 (321)
T PF03178_consen 99 GR-LVVAV-GNKLYVYDLDNSKTLLKKAFYD-SPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR 173 (321)
T ss_dssp TE-EEEEE-TTEEEEEEEETTSSEEEEEEE--BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B
T ss_pred CE-EEEee-cCEEEEEEccCcccchhhheec-ceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc
Confidence 44 44443 4789999998887 44333332 24466666554 56899999888888875543 33344443333455
Q ss_pred eeeEEEECCCCcEEEEeeCCCCeEEEEEcCC-------cc-eeEE-eecCCCCCcEEE---EeCCC--C------cEEEE
Q 040370 155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDALT-------AE-KVAK-WSSNHIGAPRWI---EHSPA--E------AAFIT 214 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-------~~-~~~~-~~~~~~~~v~~~---~~~~~--~------~~l~s 214 (228)
.+.++.+-+++..++++.. +|.+.++.... +. .+.. ........|+++ .+.|. + ..++-
T Consensus 174 ~v~~~~~l~d~~~~i~~D~-~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~ 252 (321)
T PF03178_consen 174 WVTAAEFLVDEDTIIVGDK-DGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILY 252 (321)
T ss_dssp EEEEEEEE-SSSEEEEEET-TSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEE
T ss_pred cEEEEEEecCCcEEEEEcC-CCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEE
Confidence 6777777755566666555 79999997752 12 2221 112334567777 55552 2 24777
Q ss_pred ecCCCCEEE
Q 040370 215 CGTDRSVRF 223 (228)
Q Consensus 215 ~~~dg~i~v 223 (228)
++.+|.|-.
T Consensus 253 ~T~~G~Ig~ 261 (321)
T PF03178_consen 253 GTVDGSIGV 261 (321)
T ss_dssp EETTS-EEE
T ss_pred EecCCEEEE
Confidence 788998874
No 351
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.28 E-value=0.00075 Score=50.87 Aligned_cols=204 Identities=13% Similarity=0.036 Sum_probs=105.0
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceee-------------eccceeeEEeCCCCCeEEEEec
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEIS-------------VNGAINQVRYSSTGGMYVTASK 85 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~ 85 (228)
...+....|+|+|+.++... ++.|.+.+..+++..+........ .-+.-..+.|||++++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 56788999999999999876 468999988777544322211000 0112367889999998887643
Q ss_pred C-Ce-----------------------------------EEEEeCCCCceee-EEe--cccccceeEEEEECCCCCEEEE
Q 040370 86 D-GA-----------------------------------IRLWDGVSANCVR-SIV--GAHGTAEATSANFTKDQRFVLS 126 (228)
Q Consensus 86 d-g~-----------------------------------v~iwd~~~~~~~~-~~~--~~~~~~~i~~~~~~~~~~~l~~ 126 (228)
| .. +.++|+.+++... ... .......+..+.|.++++.++.
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 2 11 2334444443321 111 0112456788889888884443
Q ss_pred ee--CCC---eEEEEEccCCeeEEEEecceeeee---eeEEEEC-CCCcEEEEeeCCCCeEEE--EEcCCcceeEEeecC
Q 040370 127 CG--KDS---TVKLWEVSSGRLVKQYLGATHTQL---RFQAVFN-DTEEFVLSIDEPSNEIVI--WDALTAEKVAKWSSN 195 (228)
Q Consensus 127 ~~--~d~---~i~~wd~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~d~~i~i--~d~~~~~~~~~~~~~ 195 (228)
.- .+. .+.++|..++......... .... .....+. +++..++.....||--+| ++...+. ...+ ..
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~-~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~l-T~ 277 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEET-SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQL-TS 277 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEE-SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEES-S-
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEec-CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eecc-cc
Confidence 33 222 4667788766543333211 1111 1234443 555544444445665444 4554444 2233 34
Q ss_pred CCCCcEE-EEeCCCCcEE-EEecCC--CCEEEeee
Q 040370 196 HIGAPRW-IEHSPAEAAF-ITCGTD--RSVRFWKE 226 (228)
Q Consensus 196 ~~~~v~~-~~~~~~~~~l-~s~~~d--g~i~vwd~ 226 (228)
..-.|.. +.++++++.| +++..+ +.-.+|.+
T Consensus 278 G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v 312 (353)
T PF00930_consen 278 GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV 312 (353)
T ss_dssp SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred CceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence 4555644 6677766544 355442 24445543
No 352
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.28 E-value=1.2e-05 Score=62.91 Aligned_cols=116 Identities=10% Similarity=0.096 Sum_probs=81.2
Q ss_pred cceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcce
Q 040370 109 TAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK 188 (228)
Q Consensus 109 ~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 188 (228)
...+.--+++..+++++.|+.-|.+++|.-..++. ..++.............++...++++ |+..|.|.++-+....+
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~e~lvAa-gt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSVEYLVAA-GTASGRVSVFQLNKELP 110 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecchhHhhhh-hcCCceEEeehhhccCC
Confidence 44555556677899999999999999999665543 33332223344455556666655555 55569999998876443
Q ss_pred eEEe-----ecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 189 VAKW-----SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 189 ~~~~-----~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
.... ...|...|++++|++++..+++|...|.|..-.+
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L 153 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTEL 153 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEe
Confidence 2222 1347789999999999999999999999876554
No 353
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=7.9e-06 Score=63.07 Aligned_cols=94 Identities=15% Similarity=0.181 Sum_probs=73.9
Q ss_pred ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeE-EEEECCCCCEEEEeeCCCeEEEEEccCCee
Q 040370 65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEAT-SANFTKDQRFVLSCGKDSTVKLWEVSSGRL 143 (228)
Q Consensus 65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 143 (228)
...+.-+.|+|.-..+|++..+|.|.+..++ .+.+..+..+ ...++ +++|.|||+.|+.|-.||+|++-|+.++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p--~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIP--GENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCC--CCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 3457789999999999999999999999987 6667777654 44455 999999999999999999999999999887
Q ss_pred EEEEecceeeeeeeEEEEC
Q 040370 144 VKQYLGATHTQLRFQAVFN 162 (228)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~ 162 (228)
+..... .....+....|.
T Consensus 97 l~~~~~-s~e~~is~~~w~ 114 (665)
T KOG4640|consen 97 LVSFLF-SVETDISKGIWD 114 (665)
T ss_pred eecccc-ccccchheeecc
Confidence 766321 133445555554
No 354
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.24 E-value=0.00066 Score=48.11 Aligned_cols=190 Identities=16% Similarity=0.174 Sum_probs=104.6
Q ss_pred EEeCCCCEEEEecC-----CCeEEEEEcccceE-EeeeccceeeeccceeeEEeCCCCCeEEEEecC-------------
Q 040370 26 SFHPSGDFLLAGTD-----HPIAHLYDVNTFQC-YLSANVPEISVNGAINQVRYSSTGGMYVTASKD------------- 86 (228)
Q Consensus 26 ~~~~~~~~l~~~~~-----d~~i~vw~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------------- 86 (228)
.|||||.+|++.-+ -|.|-|||...+-. +..+.. + .-....+.+.+||+.++.+...
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t---~-GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lN 195 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFST---H-GIGPHEVTLMADGRTLVVANGGIETHPDFGRTELN 195 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccccc---C-CcCcceeEEecCCcEEEEeCCceecccccCccccc
Confidence 58999999987543 37899999885321 112221 1 3445778999999988876420
Q ss_pred -----CeEEEEeCCCCceeeEEecc--cccceeEEEEECCCCCEEEEeeCCCe-----EEEEEccCCeeEEEEecce---
Q 040370 87 -----GAIRLWDGVSANCVRSIVGA--HGTAEATSANFTKDQRFVLSCGKDST-----VKLWEVSSGRLVKQYLGAT--- 151 (228)
Q Consensus 87 -----g~v~iwd~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~-----i~~wd~~~~~~~~~~~~~~--- 151 (228)
-++.+.|..+++.+.+.... ...-.+..++..+||...+.+-..|. -.+=-...++.+.-+....
T Consensus 196 ldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~ 275 (366)
T COG3490 196 LDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQT 275 (366)
T ss_pred hhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHH
Confidence 12333343444444333222 22446677777777765544432221 1111112233333222111
Q ss_pred --eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370 152 --HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224 (228)
Q Consensus 152 --~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 224 (228)
-...+-+++.+.+...++.++-..+...+||..+|..+...... ....++- ...-++..+.+|.+.++
T Consensus 276 ~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~---daaGva~--~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 276 AAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP---DAAGVAA--AKGGFAVSSGQGRIIFY 345 (366)
T ss_pred HHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc---cccccee--ccCceEEecCCceEEec
Confidence 13345567777777788877777788899999999887664211 1222222 22235555566776654
No 355
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.23 E-value=5.4e-06 Score=39.93 Aligned_cols=36 Identities=17% Similarity=0.452 Sum_probs=31.2
Q ss_pred eEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 189 VAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 189 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
...+ ..|...+.++.|.+++.++++++.|+.+++|+
T Consensus 5 ~~~~-~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTL-KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEE-EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3444 46888999999999999999999999999996
No 356
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.21 E-value=0.00011 Score=59.83 Aligned_cols=138 Identities=11% Similarity=0.079 Sum_probs=92.8
Q ss_pred cCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-----CCCeEEEEecCCeEEEEeCCCCc--eee-EEeccccc
Q 040370 38 TDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-----TGGMYVTASKDGAIRLWDGVSAN--CVR-SIVGAHGT 109 (228)
Q Consensus 38 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~v~iwd~~~~~--~~~-~~~~~~~~ 109 (228)
.....|+-.|++.|+.+....... ..+|..++-.. ....-+.|-.+..+..||+|-.. .+. ........
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~---~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~ 577 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHD---DIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSK 577 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCC---CcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccC
Confidence 345778888999999888776643 23344443221 12345677788899999998643 221 11111224
Q ss_pred ceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEc
Q 040370 110 AEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDA 183 (228)
Q Consensus 110 ~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~ 183 (228)
....|++-+.+| +||.|+.+|.||+||- .++...+.. +.-..++..+..+.+|+++++++. ..+.+++.
T Consensus 578 ~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~l-p~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t 646 (794)
T PF08553_consen 578 NNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTAL-PGLGDPIIGIDVTADGKWILATCK--TYLLLIDT 646 (794)
T ss_pred CCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcC-CCCCCCeeEEEecCCCcEEEEeec--ceEEEEEE
Confidence 566777777665 6999999999999994 444333322 225688999999999999999885 77888875
No 357
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.20 E-value=8.5e-06 Score=39.19 Aligned_cols=36 Identities=31% Similarity=0.492 Sum_probs=31.5
Q ss_pred eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEE
Q 040370 12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYD 47 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~ 47 (228)
...+..|...|.++.|++++..+++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 344557889999999999999999999999999996
No 358
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.19 E-value=0.001 Score=52.46 Aligned_cols=195 Identities=11% Similarity=0.080 Sum_probs=109.6
Q ss_pred CCEEEEecCCCeEEEEEcccceEEeeecccee--eeccce--eeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecc
Q 040370 31 GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEI--SVNGAI--NQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGA 106 (228)
Q Consensus 31 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~--~~~~~i--~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 106 (228)
+..++.++.++.+.-.|.++++.+........ .....+ ..+... ++..++.++.+|.|.-+|.++++.+-.....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 45677788889999999999987766654321 000001 011111 2257888889999999999999988777653
Q ss_pred cccceeEEEEECC--CCCEEEEee---------CCCeEEEEEccCCeeEEEEecceeee-------------------ee
Q 040370 107 HGTAEATSANFTK--DQRFVLSCG---------KDSTVKLWEVSSGRLVKQYLGATHTQ-------------------LR 156 (228)
Q Consensus 107 ~~~~~i~~~~~~~--~~~~l~~~~---------~d~~i~~wd~~~~~~~~~~~~~~~~~-------------------~~ 156 (228)
.....-..+.-+| .+..++.++ .++.+.-+|..+++.+-.+....... .-
T Consensus 140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw 219 (488)
T cd00216 140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW 219 (488)
T ss_pred CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence 2100001111122 124455553 36789999999999887765421100 00
Q ss_pred eEEEECCCCcEEEEeeCC-----------------CCeEEEEEcCCcceeEEeecCCCC-----CcEEEEeC----CCCc
Q 040370 157 FQAVFNDTEEFVLSIDEP-----------------SNEIVIWDALTAEKVAKWSSNHIG-----APRWIEHS----PAEA 210 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~-----------------d~~i~i~d~~~~~~~~~~~~~~~~-----~v~~~~~~----~~~~ 210 (228)
......+.+..+++..++ ++.+.-+|.++|+..-.....+.. ......+. -++.
T Consensus 220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~ 299 (488)
T cd00216 220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK 299 (488)
T ss_pred CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC
Confidence 123334445555554431 137999999999988776432211 00000111 1232
Q ss_pred ---EEEEecCCCCEEEeee
Q 040370 211 ---AFITCGTDRSVRFWKE 226 (228)
Q Consensus 211 ---~l~s~~~dg~i~vwd~ 226 (228)
.++.++.+|.+...|.
T Consensus 300 ~~~~V~~g~~~G~l~ald~ 318 (488)
T cd00216 300 PVPAIVHAPKNGFFYVLDR 318 (488)
T ss_pred eeEEEEEECCCceEEEEEC
Confidence 5667777887766654
No 359
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.17 E-value=0.0017 Score=50.17 Aligned_cols=196 Identities=13% Similarity=0.118 Sum_probs=102.5
Q ss_pred eEEEEEeCCCCEEEEe-----cCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC---------
Q 040370 22 VRSVSFHPSGDFLLAG-----TDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG--------- 87 (228)
Q Consensus 22 v~~~~~~~~~~~l~~~-----~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------- 87 (228)
+....++|+++++|.+ ++...+++.|+++++.+..... ......+.|.++++.|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-----~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-----NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-----EEESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-----ccccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 4467889999999854 2334699999999976543211 11223499999988776554332
Q ss_pred --eEEEEeCCCCcee--eEEecccccceeEEEEECCCCCEEEEeeC---C-CeEEEEEccCC----eeEEEEecceeeee
Q 040370 88 --AIRLWDGVSANCV--RSIVGAHGTAEATSANFTKDQRFVLSCGK---D-STVKLWEVSSG----RLVKQYLGATHTQL 155 (228)
Q Consensus 88 --~v~iwd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d-~~i~~wd~~~~----~~~~~~~~~~~~~~ 155 (228)
.|+.|.+.+.... ..+...........+..++++++++.... + ..+.+.|+..+ .....+... ....
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~-~~~~ 279 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR-EDGV 279 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES-SSS-
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC-CCce
Confidence 3788888766433 33333321222667889999998775432 2 45888888764 222333221 1111
Q ss_pred eeEEEECCCCcEEEEeeC--CCCeEEEEEcCCcce--eEEeecCCCC--CcEEEEeCCCCcEE-EEecCCCC--EEEeee
Q 040370 156 RFQAVFNDTEEFVLSIDE--PSNEIVIWDALTAEK--VAKWSSNHIG--APRWIEHSPAEAAF-ITCGTDRS--VRFWKE 226 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~l-~s~~~dg~--i~vwd~ 226 (228)
...+.. ..+.+.+.+.. .++.|...++.+... .......+.. .+..+.. .+.+| +.--.++. |+++++
T Consensus 280 ~~~v~~-~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 280 EYYVDH-HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp EEEEEE-ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEET
T ss_pred EEEEEc-cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEEC
Confidence 122222 24444444432 246777777776653 2212234444 3444443 33344 44444443 555553
No 360
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.15 E-value=0.00038 Score=50.94 Aligned_cols=195 Identities=11% Similarity=0.079 Sum_probs=113.8
Q ss_pred EEEEeCCCCEEEEe--cCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC-CCcee
Q 040370 24 SVSFHPSGDFLLAG--TDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV-SANCV 100 (228)
Q Consensus 24 ~~~~~~~~~~l~~~--~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~ 100 (228)
.++++.++++++.. +-...|.|.|+...+.+.....+. +..+--++ .+-|.+-+.||.+.-..+. .|+..
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG------C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG------CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS------EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC------EEEEEecC-CCceEEEecCCceEEEEECCCCCEe
Confidence 45778888887764 445678899999888777666532 22222222 2458888899999998887 45543
Q ss_pred eEEec--ccccceeE-EEEECCCCCEEEEeeCCCeEEEEEccCCeeE--EEEecc--------eeeeeeeEEEECCCCcE
Q 040370 101 RSIVG--AHGTAEAT-SANFTKDQRFVLSCGKDSTVKLWEVSSGRLV--KQYLGA--------THTQLRFQAVFNDTEEF 167 (228)
Q Consensus 101 ~~~~~--~~~~~~i~-~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~ 167 (228)
++... +....++. .-++...+..++-.+.+|.|+--|+...... ..+... -.+.....+++++....
T Consensus 172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 22211 11112222 2334444455555778999999998765422 222110 01222334566665544
Q ss_pred EEEeeC-------CC--CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc-EEEE-ecCCCCEEEeeec
Q 040370 168 VLSIDE-------PS--NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA-AFIT-CGTDRSVRFWKEI 227 (228)
Q Consensus 168 ~~~~~~-------~d--~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s-~~~dg~i~vwd~~ 227 (228)
+++... .| ..|-++|+.+++.+.++... .++.+|+.+.+.+ +|++ ...++.+.+||..
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~ 320 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA 320 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence 443221 12 25777899999999998533 3677899988654 6654 4568999999963
No 361
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=98.13 E-value=0.0018 Score=48.95 Aligned_cols=189 Identities=12% Similarity=0.129 Sum_probs=92.8
Q ss_pred EeCCCCEEEEe--c----CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec---------------
Q 040370 27 FHPSGDFLLAG--T----DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK--------------- 85 (228)
Q Consensus 27 ~~~~~~~l~~~--~----~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--------------- 85 (228)
.-|+|+.++++ . .-|-+.+.|-++.+........... ...-....|.|..+.++|...
T Consensus 137 clp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~-~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~ 215 (461)
T PF05694_consen 137 CLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGP-QPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDL 215 (461)
T ss_dssp E-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT-------EEEETTTTEEEE-B---HHHHTT---TTTH
T ss_pred ecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCC-CCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHh
Confidence 34688888864 2 2356778888877665554433221 334467788888888888642
Q ss_pred -----CCeEEEEeCCCCceeeEEecccccceeEEEEEC--CCCCE-EEEeeCCCeEEEEEc-cCCee----EEEEecce-
Q 040370 86 -----DGAIRLWDGVSANCVRSIVGAHGTAEATSANFT--KDQRF-VLSCGKDSTVKLWEV-SSGRL----VKQYLGAT- 151 (228)
Q Consensus 86 -----dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~-l~~~~~d~~i~~wd~-~~~~~----~~~~~~~~- 151 (228)
..++.+||+.+.+.++.+...........+.|. |+..+ ++.+.-..+|..|-- +.++. +..+....
T Consensus 216 ~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v 295 (461)
T PF05694_consen 216 EAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKV 295 (461)
T ss_dssp HHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE-
T ss_pred hcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCccc
Confidence 368999999999999999876434445556665 44444 333334445554433 44432 11221100
Q ss_pred --------------eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe---ecC---------------CCCC
Q 040370 152 --------------HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW---SSN---------------HIGA 199 (228)
Q Consensus 152 --------------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~---~~~---------------~~~~ 199 (228)
-+..++.+..+.+.+++.+++-..|.++.||+......... ..+ -.+.
T Consensus 296 ~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~Gg 375 (461)
T PF05694_consen 296 EGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGG 375 (461)
T ss_dssp -SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S-
T ss_pred CcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCC
Confidence 13457888999999999999999999999999765433322 111 1123
Q ss_pred cEEEEeCCCCcEEEEec
Q 040370 200 PRWIEHSPAEAAFITCG 216 (228)
Q Consensus 200 v~~~~~~~~~~~l~s~~ 216 (228)
..-+..|.||+.|....
T Consensus 376 PqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 376 PQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ---EEE-TTSSEEEEE-
T ss_pred CCeEEEccCCeEEEEEe
Confidence 35677888888776543
No 362
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.07 E-value=0.0026 Score=50.15 Aligned_cols=160 Identities=13% Similarity=0.178 Sum_probs=95.8
Q ss_pred EEEeCCCCEEEEecCCC------------------eEEEEEcccceEEeeeccceee------eccc-eeeEEeCCCCC-
Q 040370 25 VSFHPSGDFLLAGTDHP------------------IAHLYDVNTFQCYLSANVPEIS------VNGA-INQVRYSSTGG- 78 (228)
Q Consensus 25 ~~~~~~~~~l~~~~~d~------------------~i~vw~~~~~~~~~~~~~~~~~------~~~~-i~~~~~~~~~~- 78 (228)
.++.+.+..++.++.++ .|.-.|.++|+.....+..... ...+ +..+. .-++.
T Consensus 222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~ 300 (488)
T cd00216 222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKP 300 (488)
T ss_pred eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCe
Confidence 34444566777777665 7999999999988776542110 0000 11111 01233
Q ss_pred --eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEe------------------eCCCeEEEEEc
Q 040370 79 --MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC------------------GKDSTVKLWEV 138 (228)
Q Consensus 79 --~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~------------------~~d~~i~~wd~ 138 (228)
.++.++.+|.+...|.++|+.+-..... ...+..+| ..++.+ ..+|.+.-.|+
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~ 373 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDP 373 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeC
Confidence 5788889999999999999988765432 11223333 223222 24678889999
Q ss_pred cCCeeEEEEecceee------eeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee
Q 040370 139 SSGRLVKQYLGATHT------QLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS 193 (228)
Q Consensus 139 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 193 (228)
.+++.+-+....... ...........+..+++++ .||.++.+|.++|+.+-+..
T Consensus 374 ~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~-~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 374 KTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGA-ADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred CCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEEC-CCCeEEEEECCCCceeeEEE
Confidence 999887666532110 0000000112345666655 48999999999999988874
No 363
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.06 E-value=0.0013 Score=46.13 Aligned_cols=109 Identities=14% Similarity=0.083 Sum_probs=81.2
Q ss_pred CCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeee
Q 040370 77 GGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLR 156 (228)
Q Consensus 77 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 156 (228)
..+++.|+..+.+.--|..+|+...+... ...+.+-+.- -|++++.|+..|.+++.+..+|.+...+.. .....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il---g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~--~~~vk 96 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL---GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI--LETVK 96 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh---CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeee--hhhhc
Confidence 45788899999999999999987765443 2233332222 477899999999999999999988777754 23333
Q ss_pred eEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe
Q 040370 157 FQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW 192 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 192 (228)
......+++..+..+ +.|+..+..|.++...+.+.
T Consensus 97 ~~a~~d~~~glIycg-shd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCG-SHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred cceEEcCCCceEEEe-cCCCcEEEecccccceEEec
Confidence 455667788888775 45899999999998888775
No 364
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.05 E-value=0.0017 Score=45.95 Aligned_cols=193 Identities=12% Similarity=0.058 Sum_probs=113.8
Q ss_pred eEEEeecCc--ceEEEEEeCCCCEEEEecCCC--eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC
Q 040370 12 AFRVIQDTH--NVRSVSFHPSGDFLLAGTDHP--IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG 87 (228)
Q Consensus 12 ~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 87 (228)
+++...|.. -...+.|..++.++-+.+.-| .|+.+|+.+++.......+....... ++.. +++...-.=.++
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEG---it~~-~d~l~qLTWk~~ 110 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEG---ITIL-GDKLYQLTWKEG 110 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEE---EEEE-TTEEEEEESSSS
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccccee---EEEE-CCEEEEEEecCC
Confidence 444455654 455788877787777777655 78999999998776655543222222 3332 233444445789
Q ss_pred eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeee---eeeEEEECCC
Q 040370 88 AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQ---LRFQAVFNDT 164 (228)
Q Consensus 88 ~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 164 (228)
...+||..+.+.+.++... ..-..++ .+++.|+.......++++|..+.+....+....... ....+-+. +
T Consensus 111 ~~f~yd~~tl~~~~~~~y~---~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~ 184 (264)
T PF05096_consen 111 TGFVYDPNTLKKIGTFPYP---GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-N 184 (264)
T ss_dssp EEEEEETTTTEEEEEEE-S---SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-T
T ss_pred eEEEEccccceEEEEEecC---CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-c
Confidence 9999999999988888764 3456666 456677777777789999998877766664332222 22233333 2
Q ss_pred CcEEEEeeCCCCeEEEEEcCCcceeEEeec-----------C---CCCCcEEEEeCCCCc-EEEEe
Q 040370 165 EEFVLSIDEPSNEIVIWDALTAEKVAKWSS-----------N---HIGAPRWIEHSPAEA-AFITC 215 (228)
Q Consensus 165 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-----------~---~~~~v~~~~~~~~~~-~l~s~ 215 (228)
..+.+---....|...|..+|+....+.. . ...-.+.|++.|..+ +++||
T Consensus 185 -G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 185 -GKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp -TEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred -CEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 34444444457788888888887765520 0 134578899988655 45555
No 365
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.05 E-value=0.0018 Score=46.14 Aligned_cols=194 Identities=16% Similarity=0.157 Sum_probs=123.0
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS 96 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 96 (228)
+-...+.++.|+|+.+.|++..+.+.-.|+=...|+.+....... -.....+.+..++++.++--.++.+.++.+..
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g---~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG---FSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc---cCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 445669999999999988888777777777777888887776654 33456788887887777777788888887765
Q ss_pred CceeeE-----Ee--c-ccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEE---Eecce-----eeeeeeEEE
Q 040370 97 ANCVRS-----IV--G-AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQ---YLGAT-----HTQLRFQAV 160 (228)
Q Consensus 97 ~~~~~~-----~~--~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~---~~~~~-----~~~~~~~~~ 160 (228)
...... +. . .+.....-.++|.|....|+.+-+-.-+.+|....+..... ...+. .-..+..+.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 532211 11 1 11144567899999888888887777777777653321111 11100 123355677
Q ss_pred ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee--cC------CCCCcEEEEeCCCCcEEEE
Q 040370 161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS--SN------HIGAPRWIEHSPAEAAFIT 214 (228)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~------~~~~v~~~~~~~~~~~l~s 214 (228)
|++....+++-+.+++.+.-.|.. |+.+..+. .+ ...+.-.++..++|.+.++
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 887777777667767888888854 44433331 11 1113445777777764443
No 366
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=9.7e-06 Score=55.04 Aligned_cols=141 Identities=9% Similarity=0.017 Sum_probs=81.1
Q ss_pred EEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEE
Q 040370 80 YVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQA 159 (228)
Q Consensus 80 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
+..-+.||.|.-++++..+....-...+... .....-+..+++|+.+|.|++|....-......... ....+.+.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~----~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-~~e~i~~~ 107 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG----QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS-GEESIDLG 107 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc----eeecccCceEEeecccceEEEecCCccchHHHhhhc-ccccceec
Confidence 4445667888888776543221111111011 111123567899999999999987621111111100 11222222
Q ss_pred EECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCC-CCcEEEEeCCCCcEEEEe--cCCCCEEEeee
Q 040370 160 VFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHI-GAPRWIEHSPAEAAFITC--GTDRSVRFWKE 226 (228)
Q Consensus 160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~--~~dg~i~vwd~ 226 (228)
...-+...+.+++..||.|+.|+....+.+... ..|. .+......+..+..++.+ |.|..++.|++
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~-g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV-GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeee-ccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence 222223336666666899999999888777766 5666 566666666667777777 77888888875
No 367
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.01 E-value=0.0027 Score=46.64 Aligned_cols=195 Identities=12% Similarity=0.076 Sum_probs=109.1
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEee-eccceeeeccceeeEEeCCCCCeEEEEec----------
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLS-ANVPEISVNGAINQVRYSSTGGMYVTASK---------- 85 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------- 85 (228)
.+.+.+.++..-..+..|+++. .| +.+++.+++..... ............+.+...|+|.+.++...
T Consensus 63 ~~p~~~~~~~~~d~~g~Lv~~~-~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~ 140 (307)
T COG3386 63 PSPGGFSSGALIDAGGRLIACE-HG-VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEER 140 (307)
T ss_pred ECCCCcccceeecCCCeEEEEc-cc-cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccC
Confidence 3444555554444444555443 33 56777766655222 22222222456788899999986664433
Q ss_pred -CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC-CeEEEEEccC--Cee---EEEEecceeeeeeeE
Q 040370 86 -DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-STVKLWEVSS--GRL---VKQYLGATHTQLRFQ 158 (228)
Q Consensus 86 -dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~~wd~~~--~~~---~~~~~~~~~~~~~~~ 158 (228)
-|.|+..|. .+...+.+..+ -..-+.++|+||++.|+.+... +.|.-|++.. +.. .............-.
T Consensus 141 ~~G~lyr~~p-~g~~~~l~~~~--~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG 217 (307)
T COG3386 141 PTGSLYRVDP-DGGVVRLLDDD--LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDG 217 (307)
T ss_pred CcceEEEEcC-CCCEEEeecCc--EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCc
Confidence 133444444 45544444432 3345789999999887777654 7788887752 111 111111112334445
Q ss_pred EEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCc-EEEEecCC
Q 040370 159 AVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEA-AFITCGTD 218 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~-~l~s~~~d 218 (228)
++...++.+.++.....+.|.+|+.. ++.+.... -....+++++|-- +.+ +++|+...
T Consensus 218 ~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~-lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 218 MAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK-LPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred eEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE-CCCCCCccceEeCCCcCEEEEEecCC
Confidence 66667777775444322399999987 88888774 3336778888854 444 44444443
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.00036 Score=53.43 Aligned_cols=145 Identities=12% Similarity=0.126 Sum_probs=94.0
Q ss_pred CCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC-------eEEEEecCCeEEEEeCCCCce--
Q 040370 30 SGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG-------MYVTASKDGAIRLWDGVSANC-- 99 (228)
Q Consensus 30 ~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~v~iwd~~~~~~-- 99 (228)
+.++|+ .+.....++-.|++.|+.+..... ...|+-+.+.|+.+ .-+.|-.|..|.-||++-...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~-----~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k 418 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKF-----EDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK 418 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeec-----cCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcce
Confidence 334444 455556678888899988776655 33477788888643 234566788899999884332
Q ss_pred eeEEec--ccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCe
Q 040370 100 VRSIVG--AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNE 177 (228)
Q Consensus 100 ~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 177 (228)
+...+. ........|.+-..+ .+++.|+.+|.||+||- .+....+.. +.-..++..+..+.+|.++++++. ..
T Consensus 419 l~~~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAl-PgLG~~I~hVdvtadGKwil~Tc~--ty 493 (644)
T KOG2395|consen 419 LAVVQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTAL-PGLGDAIKHVDVTADGKWILATCK--TY 493 (644)
T ss_pred eeeeeccccccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhcc-cccCCceeeEEeeccCcEEEEecc--cE
Confidence 111111 111334455555544 47999999999999996 444433322 225677888888899999999875 67
Q ss_pred EEEEEcC
Q 040370 178 IVIWDAL 184 (228)
Q Consensus 178 i~i~d~~ 184 (228)
+.+.+..
T Consensus 494 LlLi~t~ 500 (644)
T KOG2395|consen 494 LLLIDTL 500 (644)
T ss_pred EEEEEEe
Confidence 7777653
No 369
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.0014 Score=50.42 Aligned_cols=146 Identities=8% Similarity=0.046 Sum_probs=93.8
Q ss_pred CCCCeE-EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCC-------EEEEeeCCCeEEEEEccCCee--E
Q 040370 75 STGGMY-VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR-------FVLSCGKDSTVKLWEVSSGRL--V 144 (228)
Q Consensus 75 ~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~d~~i~~wd~~~~~~--~ 144 (228)
.+.++| .++.....++-.|++.|+.+..+..+. .|+-+.+.|+.+ .-+.|-.|..|.-||.|-... +
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~---di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFED---DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccC---CcceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 344444 455556678888999999999998853 377777887643 234566788899999984322 1
Q ss_pred EEEeccee-eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEE
Q 040370 145 KQYLGATH-TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRF 223 (228)
Q Consensus 145 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v 223 (228)
...+.+.- ...-+.+.-.....+++++ +.+|.|++||- .+....+...+...+|..+..+.+|++++..+ +..+.+
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG~Ivvg-S~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlL 496 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESGYIVVG-SLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLL 496 (644)
T ss_pred eeeeccccccccccceeeecCCceEEEe-ecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEE
Confidence 11111111 1111222222344566664 44799999995 77766666678889999999999999877655 344555
Q ss_pred eee
Q 040370 224 WKE 226 (228)
Q Consensus 224 wd~ 226 (228)
-++
T Consensus 497 i~t 499 (644)
T KOG2395|consen 497 IDT 499 (644)
T ss_pred EEE
Confidence 443
No 370
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.91 E-value=0.0039 Score=45.23 Aligned_cols=145 Identities=17% Similarity=0.115 Sum_probs=84.5
Q ss_pred CCCEEEEecCCCeEEEEEccc-ceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEe----
Q 040370 30 SGDFLLAGTDHPIAHLYDVNT-FQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIV---- 104 (228)
Q Consensus 30 ~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---- 104 (228)
.++.|+.|+++| +.+++... ........ ...|..+...|+-+.+++-+ |+.+.++++..-.......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~------~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK------LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEee------cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccc
Confidence 678899999998 88999832 22222221 34499999999877666654 5999999987654333110
Q ss_pred --------cccccceeEEEE--ECCCCCEEEEeeCCCeEEEEEccCC-----eeEEEEecceeeeeeeEEEECCCCcEEE
Q 040370 105 --------GAHGTAEATSAN--FTKDQRFVLSCGKDSTVKLWEVSSG-----RLVKQYLGATHTQLRFQAVFNDTEEFVL 169 (228)
Q Consensus 105 --------~~~~~~~i~~~~--~~~~~~~l~~~~~d~~i~~wd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (228)
.......+...+ -...+...+.....+.|.+|..... +....+. -+..+..+.|. ++.++
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~---lp~~~~~i~~~--~~~i~ 152 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS---LPDPPSSIAFL--GNKIC 152 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE---cCCCcEEEEEe--CCEEE
Confidence 001122333333 1223334444445568999888653 2334443 34555666666 44444
Q ss_pred EeeCCCCeEEEEEcCCccee
Q 040370 170 SIDEPSNEIVIWDALTAEKV 189 (228)
Q Consensus 170 ~~~~~d~~i~i~d~~~~~~~ 189 (228)
.+.. ....+.|+.++...
T Consensus 153 v~~~--~~f~~idl~~~~~~ 170 (275)
T PF00780_consen 153 VGTS--KGFYLIDLNTGSPS 170 (275)
T ss_pred EEeC--CceEEEecCCCCce
Confidence 4333 56778888766543
No 371
>PHA02713 hypothetical protein; Provisional
Probab=97.90 E-value=0.0021 Score=51.44 Aligned_cols=186 Identities=9% Similarity=0.014 Sum_probs=90.2
Q ss_pred CCCEEEEecCC------CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC-----eEEEEeCCCCc
Q 040370 30 SGDFLLAGTDH------PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG-----AIRLWDGVSAN 98 (228)
Q Consensus 30 ~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~ 98 (228)
++..++.|+.+ ..+..||..+..-......+.. ......+.. +++..+.|+.++ .+..||..+.+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~--R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKN--RCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcch--hhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 56666777743 3477788877653322222211 112222222 577777887654 48889988764
Q ss_pred eeeEEecccccceeEEEEECCCCCEEEEeeCCC-----------------------eEEEEEccCCeeEEEEecceeeee
Q 040370 99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS-----------------------TVKLWEVSSGRLVKQYLGATHTQL 155 (228)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----------------------~i~~wd~~~~~~~~~~~~~~~~~~ 155 (228)
-...-...........+.+ +++..+.|+.++ .+..||.++.+....-... ....
T Consensus 379 W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~-~~r~ 455 (557)
T PHA02713 379 WKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW-TGTI 455 (557)
T ss_pred EEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC-cccc
Confidence 3321111111111112222 577777777542 4778888776543221111 1111
Q ss_pred eeEEEECCCCcEEEEeeCCC-----CeEEEEEcCC-ccee--EEeecCCCCCcEEEEeCCCCcEEEEecCCC--CEEEee
Q 040370 156 RFQAVFNDTEEFVLSIDEPS-----NEIVIWDALT-AEKV--AKWSSNHIGAPRWIEHSPAEAAFITCGTDR--SVRFWK 225 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~d-----~~i~i~d~~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~i~vwd 225 (228)
...++. -++...+.+|..+ ..+..||..+ .+-. ..+ .........+.+ +++..++||.|| .+..||
T Consensus 456 ~~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m-~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 456 RPGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT-ESRLSALHTILH--DNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred cCcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc-CcccccceeEEE--CCEEEEEeeecceeehhhcC
Confidence 111221 2344334433311 2467899876 3322 222 111222222333 788889999888 555565
Q ss_pred e
Q 040370 226 E 226 (228)
Q Consensus 226 ~ 226 (228)
+
T Consensus 532 ~ 532 (557)
T PHA02713 532 V 532 (557)
T ss_pred c
Confidence 4
No 372
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.88 E-value=0.0066 Score=46.76 Aligned_cols=170 Identities=12% Similarity=0.103 Sum_probs=83.7
Q ss_pred eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEeccccc-----ceeEEEE
Q 040370 42 IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGT-----AEATSAN 116 (228)
Q Consensus 42 ~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-----~~i~~~~ 116 (228)
.|.||+.. |+.+...... .+.|.++.|+.+. .|+.-..||.++++|+. |+....+...... ..+....
T Consensus 62 ~I~iys~s-G~ll~~i~w~----~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~ 134 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWD----SGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIW 134 (410)
T ss_pred EEEEECCC-CCEeEEEEEC----CCCEEEEEECCCC-eEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccc
Confidence 48888865 4444444332 3789999999765 46666789999999986 3331111110001 1122223
Q ss_pred ECCCCCEEEEeeCCCeEEEEEccCCe-eEEEEec-ce-------eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc
Q 040370 117 FTKDQRFVLSCGKDSTVKLWEVSSGR-LVKQYLG-AT-------HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE 187 (228)
Q Consensus 117 ~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 187 (228)
+..+|-.+++ .++.+.+..--... ....+.. +. .........+..+....+.... ++.+.+.+-...+
T Consensus 135 ~~~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~-g~~i~~i~~~~~~ 211 (410)
T PF04841_consen 135 FYKNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLAN-GETIYIIDENSFK 211 (410)
T ss_pred cCCCCEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEec-CCEEEEEEccccc
Confidence 3334533333 34444443221111 1111100 00 0000000112223332222222 2444433322211
Q ss_pred eeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 188 KVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 188 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
. + ...+++..++.||+++++|.-..+|.+.+...
T Consensus 212 ~---i--~~~~~i~~iavSpng~~iAl~t~~g~l~v~ss 245 (410)
T PF04841_consen 212 Q---I--DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSS 245 (410)
T ss_pred c---c--cCCCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 1 1 23468999999999999999999999887653
No 373
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.87 E-value=0.004 Score=44.19 Aligned_cols=158 Identities=10% Similarity=0.116 Sum_probs=92.7
Q ss_pred ccceeeEEeCCCCC-eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe-
Q 040370 65 NGAINQVRYSSTGG-MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR- 142 (228)
Q Consensus 65 ~~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~- 142 (228)
...+..++|+|+.+ ++++....+.|...+. +|+.++.+.... ....-.+++..++.++++.-.++.+.++++....
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----T
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEecccc
Confidence 44599999999755 6667778889988886 578888776643 4567788888888887777778999999984321
Q ss_pred -----eEEEEe--c-ceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC---cceeEEe-------ecCCCCCcEEEE
Q 040370 143 -----LVKQYL--G-ATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT---AEKVAKW-------SSNHIGAPRWIE 204 (228)
Q Consensus 143 -----~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~---~~~~~~~-------~~~~~~~v~~~~ 204 (228)
....+. . .......-.++|++.+..++++-. ..-..+|.++. ....... .......+.+++
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE-~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE-RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE-SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC-CCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 112222 1 113344678999998777777655 34555666543 2111111 012445688899
Q ss_pred eCC-CCcEEEEecCCCCEEEee
Q 040370 205 HSP-AEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 205 ~~~-~~~~l~s~~~dg~i~vwd 225 (228)
++| .+.+++.+..+..|...|
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d 199 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELD 199 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE-
T ss_pred EcCCCCeEEEEECCCCeEEEEC
Confidence 999 456777777777777665
No 374
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.87 E-value=7.8e-05 Score=37.84 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=30.1
Q ss_pred cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ 52 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~ 52 (228)
...+|.+++|+|..++||.|+.+|.|.++.+ +++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 3567999999999999999999999999998 444
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.86 E-value=0.0036 Score=50.28 Aligned_cols=149 Identities=8% Similarity=0.023 Sum_probs=88.1
Q ss_pred cceeeEEeCCCCCeEEEEe------cCC--eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC-------
Q 040370 66 GAINQVRYSSTGGMYVTAS------KDG--AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD------- 130 (228)
Q Consensus 66 ~~i~~~~~~~~~~~l~~~~------~dg--~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------- 130 (228)
..+...+.+|+|+.++... .|. .|.+.+. .+.. ..+.. ......-.|+|+|..+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~---g~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE---GHSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec---CCCCCCceECCCCCceEEEecCcceEEEe
Confidence 4678899999999877654 243 4555564 2222 33332 2237788999998877776533
Q ss_pred -----CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEE---EEcCCcceeE----EeecCCCC
Q 040370 131 -----STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI---WDALTAEKVA----KWSSNHIG 198 (228)
Q Consensus 131 -----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i---~d~~~~~~~~----~~~~~~~~ 198 (228)
+.+.+.+++.++... .....+..+.|+|+|..++.... +.|.+ -....|.... .+...-..
T Consensus 425 ~~~~~gql~~~~vd~ge~~~-----~~~g~Issl~wSpDG~RiA~i~~--g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~ 497 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS-----RVPGPISELQLSRDGVRAAMIIG--GKVYLAVVEQTEDGQYALTNPREVGPGLGD 497 (591)
T ss_pred ccCCCceEEEEeccCchhhh-----ccCCCcCeEEECCCCCEEEEEEC--CEEEEEEEEeCCCCceeecccEEeecccCC
Confidence 223333333322211 12345889999999999888764 77777 3433443111 12122333
Q ss_pred CcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 199 APRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 199 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.+.++.|.+++.++ .+..++.-.+|.+.
T Consensus 498 ~~~~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 498 TAVSLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred ccccceEecCCEEE-EEecCCCCceEEEe
Confidence 46889999998855 44555555566643
No 376
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.86 E-value=0.0072 Score=46.71 Aligned_cols=116 Identities=11% Similarity=0.135 Sum_probs=72.6
Q ss_pred eeeEEeCCCCCeEEEE-ecCC----eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCC-----------
Q 040370 68 INQVRYSSTGGMYVTA-SKDG----AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS----------- 131 (228)
Q Consensus 68 i~~~~~~~~~~~l~~~-~~dg----~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----------- 131 (228)
+....++|++++++.+ +..| .+++.|+++++.+..... ......+.|.++++.|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~---~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE---NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE---EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc---ccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 3457899999988755 3444 599999999976653322 11223499999988776554332
Q ss_pred eEEEEEccCCeeE--EEEecceeeeeeeEEEECCCCcEEEEeeCC--C-CeEEEEEcCCc
Q 040370 132 TVKLWEVSSGRLV--KQYLGATHTQLRFQAVFNDTEEFVLSIDEP--S-NEIVIWDALTA 186 (228)
Q Consensus 132 ~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d-~~i~i~d~~~~ 186 (228)
.|+.|.+.+...- ..+...........+..++++++++..... + ..+.+.|+..+
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 4788888765432 333332222225677889999998764432 3 45888888764
No 377
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=7.1e-05 Score=61.57 Aligned_cols=104 Identities=17% Similarity=0.282 Sum_probs=73.4
Q ss_pred CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccc-
Q 040370 30 SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHG- 108 (228)
Q Consensus 30 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~- 108 (228)
.+..++.|+..|.+-..|+...-.. . ....+..++|++++|+.+|..++.|-.+|.|.+||+..++..+.+..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~--~-~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGP--L-HQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccch--h-hcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc
Confidence 4567888999999988887653211 1 11112278999999999999999999999999999999988887766421
Q ss_pred cceeEEEEECCCCCEEEEeeCCCeEEEEEc
Q 040370 109 TAEATSANFTKDQRFVLSCGKDSTVKLWEV 138 (228)
Q Consensus 109 ~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~ 138 (228)
...+.-+.+..++..++++...|. +|.+
T Consensus 175 ~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 175 VTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 122333344445557888887775 5543
No 378
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.86 E-value=0.0053 Score=45.11 Aligned_cols=191 Identities=13% Similarity=0.108 Sum_probs=111.4
Q ss_pred EEEeCCCC-EEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEE
Q 040370 25 VSFHPSGD-FLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSI 103 (228)
Q Consensus 25 ~~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 103 (228)
-.|.++.. ++.+--..+.|.-|+..+++...... .+.+.++..-..+..|+++.. -+.+++.+++.....+
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~------p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~ 101 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPS------PGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLL 101 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEEC------CCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEe
Confidence 34667666 44455667888888887665332222 233344444334445555533 3666676655553333
Q ss_pred ecc---cccceeEEEEECCCCCEEEEeeC-----------CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEE
Q 040370 104 VGA---HGTAEATSANFTKDQRFVLSCGK-----------DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVL 169 (228)
Q Consensus 104 ~~~---~~~~~i~~~~~~~~~~~l~~~~~-----------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (228)
... ......+.....|+|.+-++... -|.++.+|. .+.....+.. +-.....++|+|+++.++
T Consensus 102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~--~~~~~NGla~SpDg~tly 178 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD--DLTIPNGLAFSPDGKTLY 178 (307)
T ss_pred ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC--cEEecCceEECCCCCEEE
Confidence 221 11244567788888886665443 133444443 4444444433 345567899999999999
Q ss_pred EeeCCCCeEEEEEcCC--c----ceeEEeecCCCCCcEEEEeCCCCcEEEEecCCC-CEEEeee
Q 040370 170 SIDEPSNEIVIWDALT--A----EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDR-SVRFWKE 226 (228)
Q Consensus 170 ~~~~~d~~i~i~d~~~--~----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-~i~vwd~ 226 (228)
.+.+..+.|.-|++.. + +..........+..-.++...+|.+.+++..+| .|.+|+.
T Consensus 179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p 242 (307)
T COG3386 179 VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP 242 (307)
T ss_pred EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence 9888778999887752 1 111222123456677788888888776555544 7777764
No 379
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.80 E-value=0.011 Score=47.07 Aligned_cols=193 Identities=10% Similarity=0.007 Sum_probs=113.0
Q ss_pred CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccce-------eeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEE
Q 040370 31 GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAI-------NQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSI 103 (228)
Q Consensus 31 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i-------~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 103 (228)
+..+++++.++.|.-.|.++|+.+.............. ..+++ .+..++.++.|+.+.-.|.++|+.+-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 55777777788999999999998776654211000010 11122 2346778888999999999999988765
Q ss_pred ecccccceeEEEEECC--CCCEEEEee------CCCeEEEEEccCCeeEEEEecceee----------------------
Q 040370 104 VGAHGTAEATSANFTK--DQRFVLSCG------KDSTVKLWEVSSGRLVKQYLGATHT---------------------- 153 (228)
Q Consensus 104 ~~~~~~~~i~~~~~~~--~~~~l~~~~------~d~~i~~wd~~~~~~~~~~~~~~~~---------------------- 153 (228)
....... -..+.-+| .+..++.+. .+|.|.-+|.++|+.+-.+......
T Consensus 147 ~~~~~~~-~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 147 KNGDYKA-GYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred ccccccc-cccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 5321110 01111122 123455543 2689999999999887665432110
Q ss_pred --------eeeeEEEECCCCcEEEEeeCC----C-----------CeEEEEEcCCcceeEEeecCCCC--------CcEE
Q 040370 154 --------QLRFQAVFNDTEEFVLSIDEP----S-----------NEIVIWDALTAEKVAKWSSNHIG--------APRW 202 (228)
Q Consensus 154 --------~~~~~~~~~~~~~~~~~~~~~----d-----------~~i~i~d~~~~~~~~~~~~~~~~--------~v~~ 202 (228)
..-....+.+....++...++ + ..|.-.|+++|+..-.++..|.. +..=
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l 305 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL 305 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence 000123556656655554432 1 26777899999987776432211 1111
Q ss_pred EEeCCCCc---EEEEecCCCCEEEeee
Q 040370 203 IEHSPAEA---AFITCGTDRSVRFWKE 226 (228)
Q Consensus 203 ~~~~~~~~---~l~s~~~dg~i~vwd~ 226 (228)
+....+|+ .++.+..+|.+.+.|.
T Consensus 306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr 332 (527)
T TIGR03075 306 FDLKKDGKPRKLLAHADRNGFFYVLDR 332 (527)
T ss_pred EEeccCCcEEEEEEEeCCCceEEEEEC
Confidence 22324565 7788899999988875
No 380
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.76 E-value=0.0065 Score=43.32 Aligned_cols=148 Identities=14% Similarity=0.203 Sum_probs=92.6
Q ss_pred cceeeEEeCCCC-CeEEEEecCCe-EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC-----CeEEEEEc
Q 040370 66 GAINQVRYSSTG-GMYVTASKDGA-IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-----STVKLWEV 138 (228)
Q Consensus 66 ~~i~~~~~~~~~-~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~wd~ 138 (228)
..-..++|+|.. .-++.+-.-|+ ..++|.+..+.+..+......-.--.=.|+|||.+|+..-.| |.|-+||.
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEec
Confidence 445678898854 44555555554 678999888777666544322222234699999999876544 68999999
Q ss_pred cCC-eeEEEEecceeeeeeeEEEECCCCcEEEEeeCC-----------------CCeEEEEEcCCcceeEEeec---CCC
Q 040370 139 SSG-RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP-----------------SNEIVIWDALTAEKVAKWSS---NHI 197 (228)
Q Consensus 139 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------d~~i~i~d~~~~~~~~~~~~---~~~ 197 (228)
+.+ +.+..+.. +......+.+.++|+.++..++. ..++.+.|..+|+.+.+... .+.
T Consensus 148 r~~fqrvgE~~t--~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~ 225 (366)
T COG3490 148 REGFQRVGEFST--HGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ 225 (366)
T ss_pred ccccceeccccc--CCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh
Confidence 853 22333333 55566778889999998886541 12344445455554433211 244
Q ss_pred CCcEEEEeCCCCcEEEEe
Q 040370 198 GAPRWIEHSPAEAAFITC 215 (228)
Q Consensus 198 ~~v~~~~~~~~~~~l~s~ 215 (228)
-.+..++..+||..++.+
T Consensus 226 lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred cceeeeeeCCCCcEEEEE
Confidence 567778888888766554
No 381
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.00027 Score=58.41 Aligned_cols=104 Identities=15% Similarity=0.166 Sum_probs=71.8
Q ss_pred CCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEeccee-ee
Q 040370 76 TGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATH-TQ 154 (228)
Q Consensus 76 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~-~~ 154 (228)
.+..++.|+..|.+...|+... .-.-..+.+...+|++++|+.+|..++.|-.+|.|.+||+..++..+.+..+.+ ..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 3556888999999999997653 221233344578999999999999999999999999999999888877754332 22
Q ss_pred eeeEEEECCCCcEEEEeeCCCCeEEEEEc
Q 040370 155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDA 183 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~ 183 (228)
.+....+..++..++++.. .|. +|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~-~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDT-GGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccC-CCc--eEEE
Confidence 3344444445555555433 354 5543
No 382
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.70 E-value=0.00019 Score=36.40 Aligned_cols=33 Identities=9% Similarity=0.215 Sum_probs=29.6
Q ss_pred ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370 65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN 98 (228)
Q Consensus 65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 98 (228)
...|.+++|+|...++|.++.+|.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 567999999999999999999999999998 444
No 383
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.66 E-value=0.016 Score=44.76 Aligned_cols=178 Identities=10% Similarity=0.117 Sum_probs=90.0
Q ss_pred cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccce-----eeEEeCCCCCeEEEEecCCeEEEEeC
Q 040370 20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAI-----NQVRYSSTGGMYVTASKDGAIRLWDG 94 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~dg~v~iwd~ 94 (228)
+.|.++.|+.+ ..|++-..||.++++|+.... .+.....-....| ....+..+|-.+++ .++.+.+.+-
T Consensus 81 ~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n 154 (410)
T PF04841_consen 81 GRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNN 154 (410)
T ss_pred CCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce---eechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeC
Confidence 78999999875 455667789999999986333 1111110002222 22233335533333 3444444432
Q ss_pred CCCc-eeeEEecc---cc----cceeEE-EEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCC
Q 040370 95 VSAN-CVRSIVGA---HG----TAEATS-ANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE 165 (228)
Q Consensus 95 ~~~~-~~~~~~~~---~~----~~~i~~-~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (228)
.... ..+.+... .. ...... ..++.+....+....++.+.+.+-...+. +. ....+..++.+|++
T Consensus 155 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~---~~~~i~~iavSpng 228 (410)
T PF04841_consen 155 IDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID---SDGPIIKIAVSPNG 228 (410)
T ss_pred ccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc---CCCCeEEEEECCCC
Confidence 1111 11111110 00 000000 12333444444444445555443222111 11 23467899999999
Q ss_pred cEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc
Q 040370 166 EFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA 210 (228)
Q Consensus 166 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (228)
++++.-.. +|.+.+....-.+....+...-......+.|.-+..
T Consensus 229 ~~iAl~t~-~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 229 KFIALFTD-SGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred CEEEEEEC-CCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 99988766 699988876656666555444445666777765443
No 384
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.63 E-value=0.0083 Score=44.99 Aligned_cols=164 Identities=15% Similarity=0.093 Sum_probs=78.1
Q ss_pred EcccceEEeeecccee-eeccceeeEEeCCCCCeEEEEec-C--CeEEEEeCCCCceeeEEecccccceeEEEEECCCCC
Q 040370 47 DVNTFQCYLSANVPEI-SVNGAINQVRYSSTGGMYVTASK-D--GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR 122 (228)
Q Consensus 47 ~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~-d--g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 122 (228)
|..+|..+..+..... .|.-..+.=+|.++|+.|+.++. | ..+.+.|+.+++..+...... .......++|+++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g--~~~~g~~~s~~~~ 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG--DNTFGGFLSPDDR 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS---B-TTT-EE-TTSS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC--CCccceEEecCCC
Confidence 5556655554443322 11233344567888876665554 4 457777998888776655432 2222455678888
Q ss_pred EEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC---------------------CCeEEEE
Q 040370 123 FVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP---------------------SNEIVIW 181 (228)
Q Consensus 123 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------d~~i~i~ 181 (228)
.++-...+..++-.|+++.+....+..+..-........+.++..++..-.. ...|.-.
T Consensus 94 ~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i 173 (386)
T PF14583_consen 94 ALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI 173 (386)
T ss_dssp EEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred eEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence 8776666678999999998765555443222222233334555554432110 2456667
Q ss_pred EcCCcceeEEeecCCCCCcEEEEeCCCCcEEEE
Q 040370 182 DALTAEKVAKWSSNHIGAPRWIEHSPAEAAFIT 214 (228)
Q Consensus 182 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 214 (228)
|+++|+....+. -...+..+.|+|....+++
T Consensus 174 dl~tG~~~~v~~--~~~wlgH~~fsP~dp~li~ 204 (386)
T PF14583_consen 174 DLKTGERKVVFE--DTDWLGHVQFSPTDPTLIM 204 (386)
T ss_dssp ETTT--EEEEEE--ESS-EEEEEEETTEEEEEE
T ss_pred ECCCCceeEEEe--cCccccCcccCCCCCCEEE
Confidence 888877655552 3446677889985444433
No 385
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.61 E-value=0.024 Score=45.66 Aligned_cols=180 Identities=13% Similarity=0.086 Sum_probs=91.4
Q ss_pred CCCEEEEecCC------CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe-----EEEEeCCCCc
Q 040370 30 SGDFLLAGTDH------PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA-----IRLWDGVSAN 98 (228)
Q Consensus 30 ~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-----v~iwd~~~~~ 98 (228)
++...++|+.| .++..||...++-......... ......... +|...+.|+.||. +-.||.++.+
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~--R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~ 407 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK--RSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNK 407 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCc--cccceeEEE--CCEEEEEeccccccccccEEEecCCCCc
Confidence 55677888888 3677888877763332222211 111222222 6788889998864 7778877654
Q ss_pred eeeEEecccccceeEEEEECCCCCEEEEeeCCC------eEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370 99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS------TVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID 172 (228)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
....-.........-... -++...++|+.++ .+..||..+.+....-......... .++. -+..+++.|
T Consensus 408 W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~--~~~~iYvvG 482 (571)
T KOG4441|consen 408 WTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAV--LNGKIYVVG 482 (571)
T ss_pred ccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEEE--ECCEEEEEC
Confidence 332221111011111122 2577788888554 5778888876543322211111111 1111 234444444
Q ss_pred CCCC-----eEEEEEcCCcceeEEeecC-CCCCcEEEEeCCCCcEEEEecCCCC
Q 040370 173 EPSN-----EIVIWDALTAEKVAKWSSN-HIGAPRWIEHSPAEAAFITCGTDRS 220 (228)
Q Consensus 173 ~~d~-----~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~ 220 (228)
+.|+ ++..||..+.+-...-... ....+-...+ ++...+.||.||.
T Consensus 483 G~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 483 GFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGN 534 (571)
T ss_pred CccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCc
Confidence 4444 3777888776544332111 1222222222 6777888887764
No 386
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.52 E-value=0.00011 Score=50.00 Aligned_cols=106 Identities=8% Similarity=0.129 Sum_probs=58.0
Q ss_pred CCeEEEEecCCeEEEEeCCCCceeeEEeccccccee-EEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeee
Q 040370 77 GGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEA-TSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQL 155 (228)
Q Consensus 77 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 155 (228)
+..++.|+.+|.|.+|+.............. ...+ ..+.-..++.+..+++.||.|+.|++.-.+.+.....+.. ..
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~-~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~-~~ 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG-EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF-ES 147 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcc-cccceeccccccccceeEEeccCCceeeeccccCceeeeeccccC-CC
Confidence 4578999999999999976322111111111 1222 2233333566889999999999999987766655443211 22
Q ss_pred eeEEEECCCCcEEEEe-eCCCCeEEEEEcC
Q 040370 156 RFQAVFNDTEEFVLSI-DEPSNEIVIWDAL 184 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~~-~~~d~~i~i~d~~ 184 (228)
.........++++..+ -+.|..++.|++.
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchh
Confidence 2233333333333332 1224555555553
No 387
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=97.50 E-value=0.017 Score=46.52 Aligned_cols=112 Identities=14% Similarity=0.150 Sum_probs=73.6
Q ss_pred eeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEEC--CCCCEEEEeeCCCeEEEEEcc-----C
Q 040370 68 INQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFT--KDQRFVLSCGKDSTVKLWEVS-----S 140 (228)
Q Consensus 68 i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d~~i~~wd~~-----~ 140 (228)
+.-+.-+.-++..++-+....+.|||.+.+........ .....|.++.|. |+++.+++.+..+.|.+|--. +
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34444555455444444556799999988875444332 226788999886 488999999999999998542 1
Q ss_pred ----CeeEEEEecce-eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEc
Q 040370 141 ----GRLVKQYLGAT-HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDA 183 (228)
Q Consensus 141 ----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~ 183 (228)
...+..+.... .+..+....|.++|..++++| +.+.|+|-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG---Nqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG---NQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC---CEEEEECC
Confidence 12333332221 235677888999998887764 67888874
No 388
>PHA03098 kelch-like protein; Provisional
Probab=97.39 E-value=0.034 Score=44.64 Aligned_cols=187 Identities=9% Similarity=0.049 Sum_probs=87.5
Q ss_pred CCCEEEEecCCC------eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC-----CeEEEEeCCCCc
Q 040370 30 SGDFLLAGTDHP------IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD-----GAIRLWDGVSAN 98 (228)
Q Consensus 30 ~~~~l~~~~~d~------~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~ 98 (228)
++..++.|+.++ .+..||..+.+-......+.. ......+.. +++.++.|+.+ ..+..||..+++
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP--RKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc--cccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 455666666432 567788877664332222211 122222223 56777777765 357788887665
Q ss_pred eeeEEecccccceeEEEEECCCCCEEEEeeCC------CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370 99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKD------STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID 172 (228)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
....-.... ...-.+++. -+++..+.|+.+ ..+..||+.+.+....-..+ ......++.. .++...+.+|
T Consensus 370 W~~~~~lp~-~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~~~~~-~~~~iyv~GG 445 (534)
T PHA03098 370 WREEPPLIF-PRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP-ISHYGGCAIY-HDGKIYVIGG 445 (534)
T ss_pred eeeCCCcCc-CCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC-ccccCceEEE-ECCEEEEECC
Confidence 332211111 111112222 256666777632 35888998876543321111 1111111222 2344444433
Q ss_pred CCC-------CeEEEEEcCCcceeEEeecCC-CCCcEEEEeCCCCcEEEEecCC-----CCEEEeee
Q 040370 173 EPS-------NEIVIWDALTAEKVAKWSSNH-IGAPRWIEHSPAEAAFITCGTD-----RSVRFWKE 226 (228)
Q Consensus 173 ~~d-------~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~ 226 (228)
..+ ..+.+||..+.+-...-.... ......+.+ ++..++.||.+ +.+.+||+
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred ccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeC
Confidence 211 238888987664322110011 111122222 67777777754 35667764
No 389
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.38 E-value=0.03 Score=41.09 Aligned_cols=153 Identities=14% Similarity=0.143 Sum_probs=81.4
Q ss_pred ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEc-cCCee
Q 040370 65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV-SSGRL 143 (228)
Q Consensus 65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~-~~~~~ 143 (228)
.+.+..+..+++|+++++++....+.-||.-... -...... ....|.++.|.|++...+.+ ..|.|++=+. ...+.
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~r~-~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHNRN-SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET 220 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEEccC-ccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence 5678888899999999888776667788754322 2222221 26789999999998765544 8898988772 22222
Q ss_pred EEE--EecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec--CCCCCcEEEEeCCCCcEEEEecCCC
Q 040370 144 VKQ--YLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS--NHIGAPRWIEHSPAEAAFITCGTDR 219 (228)
Q Consensus 144 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg 219 (228)
-.. .........+..+++.+++...+++++ |.+ +.....|+.-.+... .-......+.|.++.+-++. +.+|
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~--G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G 296 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS--GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDG 296 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEEST--T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STT
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeCC--ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCc
Confidence 111 111113334688899988777776554 544 344456665555432 33556888999766555554 5688
Q ss_pred CEEEe
Q 040370 220 SVRFW 224 (228)
Q Consensus 220 ~i~vw 224 (228)
.+.-|
T Consensus 297 ~ll~~ 301 (302)
T PF14870_consen 297 VLLRY 301 (302)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77554
No 390
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.36 E-value=0.032 Score=41.21 Aligned_cols=159 Identities=8% Similarity=0.009 Sum_probs=91.0
Q ss_pred CEEEEecCCCeEEEEEcc-cceEEeeeccceeeeccc-eeeEEeCCCCCeEEEEecCCeEEEEeCCCCcee--eEEeccc
Q 040370 32 DFLLAGTDHPIAHLYDVN-TFQCYLSANVPEISVNGA-INQVRYSSTGGMYVTASKDGAIRLWDGVSANCV--RSIVGAH 107 (228)
Q Consensus 32 ~~l~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~ 107 (228)
+.|.+-|.||.+.-..+. .|+..............+ +..-++...+..++--+.+|.|+--|+...... ..+....
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t 227 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT 227 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence 457788889999999887 454432221110000111 222334444445555778899999888655422 2221110
Q ss_pred --------ccceeEEEEECCCCCEEEEeeC---C-------CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCc-EE
Q 040370 108 --------GTAEATSANFTKDQRFVLSCGK---D-------STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEE-FV 168 (228)
Q Consensus 108 --------~~~~i~~~~~~~~~~~l~~~~~---d-------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 168 (228)
..+...-+++++..+.|+.--. + ..|.++|+.+++.+.++.. ...+.++..+.+.. .+
T Consensus 228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L 304 (342)
T PF06433_consen 228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLL 304 (342)
T ss_dssp HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS-EE
T ss_pred ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCCcEE
Confidence 0122344677775555544321 1 2588999999999999874 23344666666554 56
Q ss_pred EEeeCCCCeEEEEEcCCcceeEEee
Q 040370 169 LSIDEPSNEIVIWDALTAEKVAKWS 193 (228)
Q Consensus 169 ~~~~~~d~~i~i~d~~~~~~~~~~~ 193 (228)
++....++.+.+||..+|+.+.+..
T Consensus 305 ~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 305 YALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEcCCCCeEEEEeCcCCcEEeehh
Confidence 5555557999999999999988873
No 391
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.34 E-value=0.038 Score=41.62 Aligned_cols=139 Identities=12% Similarity=0.029 Sum_probs=73.3
Q ss_pred EEeCCCCEEEEecC---CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeE
Q 040370 26 SFHPSGDFLLAGTD---HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRS 102 (228)
Q Consensus 26 ~~~~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 102 (228)
+|.++|+.|+.++. ...+.+.|+.+++..+..... ........++|+.+.++-...+..|+-.|+++.+....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~----g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP----GDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-----B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCC----CCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEE
Confidence 45678877765544 456777788888876655432 12223466778888776665667899999999876555
Q ss_pred EecccccceeEEEEE--CCCCCEEEEee----------------------CCCeEEEEEccCCeeEEEEecceeeeeeeE
Q 040370 103 IVGAHGTAEATSANF--TKDQRFVLSCG----------------------KDSTVKLWEVSSGRLVKQYLGATHTQLRFQ 158 (228)
Q Consensus 103 ~~~~~~~~~i~~~~~--~~~~~~l~~~~----------------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 158 (228)
...+ ...+-...| +.++..++-.- -...|.-.|+++|+....+. .....--
T Consensus 118 y~~p--~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~---~~~wlgH 192 (386)
T PF14583_consen 118 YEVP--DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE---DTDWLGH 192 (386)
T ss_dssp EE----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE---ESS-EEE
T ss_pred EECC--cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe---cCccccC
Confidence 5443 333333344 34555543221 12346666787776554444 4455567
Q ss_pred EEECCCCcEEEEeeC
Q 040370 159 AVFNDTEEFVLSIDE 173 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~ 173 (228)
+.++|....+++-+-
T Consensus 193 ~~fsP~dp~li~fCH 207 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCH 207 (386)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred cccCCCCCCEEEEec
Confidence 788888887777654
No 392
>PHA02713 hypothetical protein; Provisional
Probab=97.32 E-value=0.0088 Score=48.05 Aligned_cols=151 Identities=7% Similarity=0.048 Sum_probs=73.9
Q ss_pred CCCEEEEecCCC-----eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC-----------------
Q 040370 30 SGDFLLAGTDHP-----IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG----------------- 87 (228)
Q Consensus 30 ~~~~l~~~~~d~-----~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----------------- 87 (228)
+++..+.|+.++ .+..||..+.+-......+.. ......+.. +++..+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~--r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIA--LSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcc--cccccEEEE--CCEEEEEeCCCcccccccccccccccccc
Confidence 566777777653 478899887653332222211 111122222 577777777542
Q ss_pred ------eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC------CeEEEEEccC-CeeEEEEecceeee
Q 040370 88 ------AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD------STVKLWEVSS-GRLVKQYLGATHTQ 154 (228)
Q Consensus 88 ------~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~~wd~~~-~~~~~~~~~~~~~~ 154 (228)
.+..||.++.+-...-........ .+++ .-+++..+.|+.+ ..+..||.++ .+....-.......
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCccccc-CcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 477788877654322211111111 1122 2246666677654 2467899887 44432211111111
Q ss_pred eeeEEEECCCCcEEEEeeCCCC--eEEEEEcCCccee
Q 040370 155 LRFQAVFNDTEEFVLSIDEPSN--EIVIWDALTAEKV 189 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~ 189 (228)
....+.. ++ .+.+.|+.++ .+..||..+.+-.
T Consensus 505 ~~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 505 ALHTILH--DN-TIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred cceeEEE--CC-EEEEEeeecceeehhhcCccccccc
Confidence 1111221 33 4444454456 6777887766544
No 393
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=97.28 E-value=0.032 Score=44.94 Aligned_cols=113 Identities=12% Similarity=0.158 Sum_probs=73.9
Q ss_pred ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeC--CCCCeEEEEecCCeEEEEeCCC--
Q 040370 21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYS--STGGMYVTASKDGAIRLWDGVS-- 96 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~v~iwd~~~-- 96 (228)
...-+.-+.-++..++-+....+.|||...+.......... .+.|.++.|. |+++.+++.+-...|.++.-..
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~---~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSE---DDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecC---CCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 44444445545544455556689999999887544433321 6789999995 5888899999999999985321
Q ss_pred -------CceeeEEec-ccccceeEEEEECCCCCEEEEeeCCCeEEEEEc
Q 040370 97 -------ANCVRSIVG-AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV 138 (228)
Q Consensus 97 -------~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~ 138 (228)
...++.+.. .+...+|.+..|.++|..++.+ ++.+.|+|-
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 123333322 1224678899999998765544 356888874
No 394
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.25 E-value=0.065 Score=42.36 Aligned_cols=122 Identities=12% Similarity=0.105 Sum_probs=73.1
Q ss_pred eecCcceEEEEEeCC----CCEEEEecCCCeEEEEEcccc-----eEEeee--ccceeeeccceeeEEeCCCCCeEEEEe
Q 040370 16 IQDTHNVRSVSFHPS----GDFLLAGTDHPIAHLYDVNTF-----QCYLSA--NVPEISVNGAINQVRYSSTGGMYVTAS 84 (228)
Q Consensus 16 ~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~vw~~~~~-----~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~ 84 (228)
++.-+.|..+.|.|- ...|++......|.||.+... +..... ...+ ...---..+.|+|....|+.-.
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e-~~pvLpQGCVWHPk~~iL~VLT 131 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIRE-PFPVLPQGCVWHPKKAILTVLT 131 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccC-CcccCCCcccccCCCceEEEEe
Confidence 344566999999993 334555566788999998632 111111 1000 0011124577999988777766
Q ss_pred cCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC-CeEEEEEcc
Q 040370 85 KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-STVKLWEVS 139 (228)
Q Consensus 85 ~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~~wd~~ 139 (228)
....=.+.+++......+... ...+.|.|.+|.+||+.|+.+-.. =.-++||-.
T Consensus 132 ~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 655555666654433333222 227899999999999987765432 346788843
No 395
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.13 E-value=0.12 Score=43.19 Aligned_cols=197 Identities=14% Similarity=0.109 Sum_probs=113.7
Q ss_pred CCCEEEEecCCCeEEEEEcccceEEeeeccceeeec----cceeeEEeC----------------CCCCeEEEEecCCeE
Q 040370 30 SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVN----GAINQVRYS----------------STGGMYVTASKDGAI 89 (228)
Q Consensus 30 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~----~~i~~~~~~----------------~~~~~l~~~~~dg~v 89 (228)
.+..++.++.++.|.-.|..+|+.+..+........ .....+.+. ..+..++.++.|+.+
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 356777788889999999999998877654321100 011223331 134478889899999
Q ss_pred EEEeCCCCceeeEEecccc----------cceeEEEEECC--CCCEEEEeeC----------CCeEEEEEccCCeeEEEE
Q 040370 90 RLWDGVSANCVRSIVGAHG----------TAEATSANFTK--DQRFVLSCGK----------DSTVKLWEVSSGRLVKQY 147 (228)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~----------~~~i~~~~~~~--~~~~l~~~~~----------d~~i~~wd~~~~~~~~~~ 147 (228)
.-.|.++|+....+..... ...-..+.-.| .+..++.|+. +|.|+-+|.++|+.+-.+
T Consensus 273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 9999999998876543110 00000111122 2345666643 688999999999988776
Q ss_pred eccee-------e---------eeeeEEEECCCCcEEEEeeC-----------------CCCeEEEEEcCCcceeEEeec
Q 040370 148 LGATH-------T---------QLRFQAVFNDTEEFVLSIDE-----------------PSNEIVIWDALTAEKVAKWSS 194 (228)
Q Consensus 148 ~~~~~-------~---------~~~~~~~~~~~~~~~~~~~~-----------------~d~~i~i~d~~~~~~~~~~~~ 194 (228)
..... . ..-....+.+....++...+ ..+.|.-.|.++|+..-.+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 42100 0 00012334444444333211 125677778888888777644
Q ss_pred CCCC--------CcEEEEeCC-CCc---EEEEecCCCCEEEeee
Q 040370 195 NHIG--------APRWIEHSP-AEA---AFITCGTDRSVRFWKE 226 (228)
Q Consensus 195 ~~~~--------~v~~~~~~~-~~~---~l~s~~~dg~i~vwd~ 226 (228)
.|.. +..=+.+.. +|+ .++.++.+|.+.+.|.
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr 476 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDR 476 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEEC
Confidence 2321 111122322 453 7888999999998885
No 396
>PRK10115 protease 2; Provisional
Probab=97.12 E-value=0.12 Score=42.87 Aligned_cols=194 Identities=6% Similarity=-0.040 Sum_probs=98.8
Q ss_pred ceEEEEEeCCCCEEEEec-----CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC------CeE
Q 040370 21 NVRSVSFHPSGDFLLAGT-----DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD------GAI 89 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~~-----~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~v 89 (228)
.+..+.++|++++|+.+. +.-.|++.|+.+++.+.... ...-..++|.++++.|+....+ ..|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i------~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL------DNVEPSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc------cCcceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 477789999999988643 33468888998775321111 1111458999998866655432 367
Q ss_pred EEEeCCCC--ceeeEEecccccceeEEEEECCCCCEEEEeeC---CCeEEEEEcc--CCeeEEEEecceeeeeeeEEEEC
Q 040370 90 RLWDGVSA--NCVRSIVGAHGTAEATSANFTKDQRFVLSCGK---DSTVKLWEVS--SGRLVKQYLGATHTQLRFQAVFN 162 (228)
Q Consensus 90 ~iwd~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~ 162 (228)
..+++.++ +....+.... .........+.++++++..+. ++.+.+++.. +++....+.. ......... +
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~-~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~-~ 277 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKD-DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR--RKDHEYSLD-H 277 (686)
T ss_pred EEEECCCChhHCeEEEeeCC-CCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC--CCCCEEEEE-e
Confidence 77888877 3333333221 111123344547777664443 3578888853 3332222221 111112222 2
Q ss_pred CCCcEEEEeeC--CCCeEEEEEcCCcceeEEeecCCC-CCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 163 DTEEFVLSIDE--PSNEIVIWDALTAEKVAKWSSNHI-GAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 163 ~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
..+.+.+.+.. ....|...++........+..... ..+..+.+. .+.++++...+|.-+++-
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~ 342 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQ 342 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence 33444444432 123444445442222222322222 367777776 334555555666655543
No 397
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.12 E-value=0.13 Score=43.22 Aligned_cols=175 Identities=11% Similarity=0.090 Sum_probs=103.8
Q ss_pred CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC--------------CeEEEEeCCCCceeeEEecc
Q 040370 41 PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD--------------GAIRLWDGVSANCVRSIVGA 106 (228)
Q Consensus 41 ~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------g~v~iwd~~~~~~~~~~~~~ 106 (228)
+.+++-.++.-+.......+. ......+++.+....+++.+.. ..++++|-++.+.+...+..
T Consensus 693 ~~l~i~tid~iqkl~irtvpl---~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~ 769 (1096)
T KOG1897|consen 693 GALTIGTIDEIQKLHIRTVPL---GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFE 769 (1096)
T ss_pred CceEEEEecchhhcceeeecC---CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeecccc
Confidence 445566555433222222222 4556677777744444444321 24677777666554433221
Q ss_pred --cccceeEEEEECCC-CCEEEEee----------CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370 107 --HGTAEATSANFTKD-QRFVLSCG----------KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE 173 (228)
Q Consensus 107 --~~~~~i~~~~~~~~-~~~l~~~~----------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
.....+.++.|..| +.+++.|. ..|.|.++.+...+.+.......-...+.++.. -+++++++.+
T Consensus 770 ~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~In- 847 (1096)
T KOG1897|consen 770 RNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGIN- 847 (1096)
T ss_pred ccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEecC-
Confidence 12334556668877 66777775 357888888877444444433222333333321 2455555543
Q ss_pred CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEE
Q 040370 174 PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRF 223 (228)
Q Consensus 174 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v 223 (228)
..|++|++.+.+.+..- ..+..++..+...-.+..++.|..-+++.+
T Consensus 848 --~~vrLye~t~~~eLr~e-~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 848 --QSVRLYEWTTERELRIE-CNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred --cEEEEEEccccceehhh-hcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 78999999888666554 678888999998888999999887666654
No 398
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.11 E-value=0.058 Score=39.17 Aligned_cols=195 Identities=12% Similarity=0.128 Sum_probs=105.3
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeecc----------ceeeeccceeeEE--eCCCCCeEEEEecC
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANV----------PEISVNGAINQVR--YSSTGGMYVTASKD 86 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~----------~~~~~~~~i~~~~--~~~~~~~l~~~~~d 86 (228)
..+|..+...|+-+.|++-+ |+.+.++++........... ........+...+ -.+.+...+.....
T Consensus 35 ~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k 113 (275)
T PF00780_consen 35 LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK 113 (275)
T ss_pred cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEEC
Confidence 34599999999877777665 49999999987554332110 0011123344444 11233334444445
Q ss_pred CeEEEEeCCCC-----ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEeccee---------
Q 040370 87 GAIRLWDGVSA-----NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATH--------- 152 (228)
Q Consensus 87 g~v~iwd~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~--------- 152 (228)
..|.+|..... +..+++.. ...+.+++|. ++.++.|..+ ...+.|+.++.....+.....
T Consensus 114 k~i~i~~~~~~~~~f~~~~ke~~l---p~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~ 187 (275)
T PF00780_consen 114 KKILIYEWNDPRNSFSKLLKEISL---PDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNS 187 (275)
T ss_pred CEEEEEEEECCcccccceeEEEEc---CCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhccc
Confidence 68998887653 34455555 5678889888 5567777654 488899987655433321111
Q ss_pred eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 153 TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
......+.--+++.++++. |..-.+.| ..|++.....-.=...+.++++ ...+|+..+.+ .|.||++.
T Consensus 188 ~~~~~~~~~~~~~e~Ll~~---~~~g~fv~-~~G~~~r~~~i~W~~~p~~~~~--~~pyli~~~~~-~iEV~~~~ 255 (275)
T PF00780_consen 188 SSKPLGIFQLSDNEFLLCY---DNIGVFVN-KNGEPSRKSTIQWSSAPQSVAY--SSPYLIAFSSN-SIEVRSLE 255 (275)
T ss_pred CCCceEEEEeCCceEEEEe---cceEEEEc-CCCCcCcccEEEcCCchhEEEE--ECCEEEEECCC-EEEEEECc
Confidence 1112223233445666542 23333334 3444333110112234555655 33477776654 49998863
No 399
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.11 E-value=0.076 Score=42.89 Aligned_cols=180 Identities=14% Similarity=0.088 Sum_probs=92.3
Q ss_pred CCCEEEEecCC------CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC------CeEEEEeCCCC
Q 040370 30 SGDFLLAGTDH------PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD------GAIRLWDGVSA 97 (228)
Q Consensus 30 ~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~ 97 (228)
.+..++.|+.+ ..+..+|..+++-......+. ...-.+++.. ++...++|+.| .++..||.++.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~---~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS---PRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc---ccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC
Confidence 45667777776 367888988875444333332 2223444444 45788888888 35788898877
Q ss_pred ceeeEEecccccceeEEEEECCCCCEEEEeeCCCe-----EEEEEccCCeeEEEEecceeeeeeeEEEE-CCCCcEEEEe
Q 040370 98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDST-----VKLWEVSSGRLVKQYLGATHTQLRFQAVF-NDTEEFVLSI 171 (228)
Q Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-----i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 171 (228)
+-...-........ .+++ .-+|...+.|+.||. +..||.++.+.-..-... . ....... .-++...+++
T Consensus 360 ~W~~~a~M~~~R~~-~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~--~-~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSD-FGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML--T-RRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred ceeccCCccCcccc-ceeE-EECCEEEEEeccccccccccEEEecCCCCcccccCCCC--c-ceeeeEEEEECCEEEEEc
Confidence 64332221110111 1111 116888899998864 778888775543222111 1 1111111 1234444444
Q ss_pred eCCC-----CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCC
Q 040370 172 DEPS-----NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDR 219 (228)
Q Consensus 172 ~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 219 (228)
|... ..+..||..+..-...-.-.....-..++ .-++.+.+.||.|+
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDG 486 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccC
Confidence 3211 35778888766533221100000011122 12677777888776
No 400
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.10 E-value=0.085 Score=41.75 Aligned_cols=153 Identities=9% Similarity=0.086 Sum_probs=86.4
Q ss_pred CcceEEEEEeCCCCEEE-Eec--CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC----CCeEEEEecCCeEEE
Q 040370 19 THNVRSVSFHPSGDFLL-AGT--DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST----GGMYVTASKDGAIRL 91 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~-~~~--~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg~v~i 91 (228)
-.++..++|. ||+.++ +.- .+|.++.=|-. .+.. -..|..+.|.|- ...+++......|.|
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~---viGq--------FEhV~GlsW~P~~~~~~paLLAVQHkkhVtV 86 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK---VIGQ--------FEHVHGLSWAPPCTADTPALLAVQHKKHVTV 86 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCCcc---Eeec--------cceeeeeeecCcccCCCCceEEEeccceEEE
Confidence 3578899997 665554 321 22332221111 1110 245888999984 224555666789999
Q ss_pred EeCCC-----CceeeEEeccc-c--cceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECC
Q 040370 92 WDGVS-----ANCVRSIVGAH-G--TAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFND 163 (228)
Q Consensus 92 wd~~~-----~~~~~~~~~~~-~--~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (228)
|.+.. ++.+.....+. . ..--..+.|+|....|+.-.....-.+++++......+... .....+.+.+|.+
T Consensus 87 WqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~ 165 (671)
T PF15390_consen 87 WQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTK 165 (671)
T ss_pred EEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecC
Confidence 98752 22221111110 0 11224578999888777665554445666654332222211 2566788999999
Q ss_pred CCcEEEEeeCCCCeEEEEEcC
Q 040370 164 TEEFVLSIDEPSNEIVIWDAL 184 (228)
Q Consensus 164 ~~~~~~~~~~~d~~i~i~d~~ 184 (228)
+|..++++-+..=.-++||-.
T Consensus 166 DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cCCEEEEEeCCeEEEEEecCc
Confidence 998777665534667888853
No 401
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.10 E-value=0.058 Score=38.88 Aligned_cols=159 Identities=11% Similarity=0.126 Sum_probs=104.1
Q ss_pred ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeE
Q 040370 65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLV 144 (228)
Q Consensus 65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 144 (228)
...+.++.|+|+.+.|++......-.++=..+|+.++++.... -...-.+.+..++++.++--.++.+.++.+......
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence 4559999999999988888888887777667899888886643 233456777878888888888899988877654322
Q ss_pred EEEe-------ccee-eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe--ecCC-------CCCcEEEEeCC
Q 040370 145 KQYL-------GATH-TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW--SSNH-------IGAPRWIEHSP 207 (228)
Q Consensus 145 ~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~--~~~~-------~~~v~~~~~~~ 207 (228)
.... ...+ ....-.++|.|....++.+-.. .-+.||....+...... ...+ -..|.++.|++
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr-~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER-NPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc-CCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 2111 1111 3445678899998888887664 66777766533311111 0111 23467788887
Q ss_pred -CCcEEEEecCCCCEEEee
Q 040370 208 -AEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 208 -~~~~l~s~~~dg~i~vwd 225 (228)
.+.+|+-+.+++.+.-.|
T Consensus 243 ~~~~LLVLS~ESr~l~Evd 261 (316)
T COG3204 243 ITNSLLVLSDESRRLLEVD 261 (316)
T ss_pred CCCcEEEEecCCceEEEEe
Confidence 556667666766655443
No 402
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.09 E-value=0.058 Score=38.74 Aligned_cols=153 Identities=12% Similarity=0.067 Sum_probs=93.2
Q ss_pred ceEEEEEeCCCCEEEEec---CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEe-CCC
Q 040370 21 NVRSVSFHPSGDFLLAGT---DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD-GVS 96 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~~---~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd-~~~ 96 (228)
.+.+.+++++++.+|... ....+.++... ........ ...+..-.|++++...+....+...+++. ..+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~-----g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~ 97 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLT-----GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSAS 97 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeecc-----CCccccccccCCCCEEEEEcCCCceEEEEecCC
Confidence 789999999999887655 33445554433 32222211 44678889999988777766666667663 333
Q ss_pred Ccee-eEEecccccceeEEEEECCCCCEEEEee---CCCeEEEEEccCCe-e-EEEEe-----cceeeeeeeEEEECCCC
Q 040370 97 ANCV-RSIVGAHGTAEATSANFTKDQRFVLSCG---KDSTVKLWEVSSGR-L-VKQYL-----GATHTQLRFQAVFNDTE 165 (228)
Q Consensus 97 ~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~~wd~~~~~-~-~~~~~-----~~~~~~~~~~~~~~~~~ 165 (228)
++.. ...........|..+.++|||..++... .++.|.+--+.... - ...+. .......+..+.|.+++
T Consensus 98 g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 98 GTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred CcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence 3322 2222221122899999999999877665 35677776553211 0 11111 11123467789999999
Q ss_pred cEEEEeeCCCCeEEE
Q 040370 166 EFVLSIDEPSNEIVI 180 (228)
Q Consensus 166 ~~~~~~~~~d~~i~i 180 (228)
..++.+...+..+..
T Consensus 178 ~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 178 TLVVLGRSAGGPVVR 192 (253)
T ss_pred EEEEEeCCCCCceeE
Confidence 988888776665554
No 403
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.05 E-value=0.029 Score=43.03 Aligned_cols=85 Identities=18% Similarity=0.269 Sum_probs=59.6
Q ss_pred cceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCC----------------CcEEEEee
Q 040370 109 TAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT----------------EEFVLSID 172 (228)
Q Consensus 109 ~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~ 172 (228)
...+.+++.+|++++.++...=|.|.++|+.++..++.+++-............+. ..+++.-.
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 45688999999999988888889999999999888877766432222211111111 22444444
Q ss_pred CCCCeEEEEEcCCcceeEEee
Q 040370 173 EPSNEIVIWDALTAEKVAKWS 193 (228)
Q Consensus 173 ~~d~~i~i~d~~~~~~~~~~~ 193 (228)
-.-|.|.||.+++|..+..+.
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEE
Confidence 556999999999998887763
No 404
>PHA03098 kelch-like protein; Provisional
Probab=97.04 E-value=0.038 Score=44.34 Aligned_cols=150 Identities=9% Similarity=0.006 Sum_probs=70.7
Q ss_pred CCCEEEEecCC-----CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC------CeEEEEeCCCCc
Q 040370 30 SGDFLLAGTDH-----PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD------GAIRLWDGVSAN 98 (228)
Q Consensus 30 ~~~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~~ 98 (228)
++..++.|+.+ ..+..||..+.+-......+.. .... +++. -+++..+.|+.+ ..+..||+.+.+
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~--r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFP--RYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC--Cccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 56667777754 3567788776653322222211 1111 1222 256666667632 458889987765
Q ss_pred eeeEEecccccceeEEEEECCCCCEEEEeeCC--------CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370 99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKD--------STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS 170 (228)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
....-.... ...-.++. ..++..++.|+.+ ..+.+||..+.+....-...........+.. ++...+.
T Consensus 418 W~~~~~~p~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~ 493 (534)
T PHA03098 418 WSKGSPLPI-SHYGGCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVV 493 (534)
T ss_pred eeecCCCCc-cccCceEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEE
Confidence 332211111 11111222 2245666666643 2388899887654332111101111111222 4444444
Q ss_pred eeCC----CCeEEEEEcCCcc
Q 040370 171 IDEP----SNEIVIWDALTAE 187 (228)
Q Consensus 171 ~~~~----d~~i~i~d~~~~~ 187 (228)
+|.. ...+.+||..+.+
T Consensus 494 GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 494 GGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred cCCcCCcccceeEEEeCCCCE
Confidence 4432 2468888876553
No 405
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.02 E-value=0.12 Score=41.36 Aligned_cols=156 Identities=12% Similarity=0.139 Sum_probs=93.9
Q ss_pred CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC--CCCeEEEEe------cCCeEEEEeCCCCceeeE
Q 040370 31 GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS--TGGMYVTAS------KDGAIRLWDGVSANCVRS 102 (228)
Q Consensus 31 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~------~dg~v~iwd~~~~~~~~~ 102 (228)
+..++.++.|+.+.-.|.++|+.+.............+. -+| .+..++.+. .+|.|.-+|.++|+.+-.
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~t---ssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTIT---AAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeccccccccccccc---CCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 356777888999999999999987766542111001111 122 123455543 268999999999987765
Q ss_pred Eecccc-----------------------------ccee-EEEEECCCCCEEEEeeCC-----C-----------eEEEE
Q 040370 103 IVGAHG-----------------------------TAEA-TSANFTKDQRFVLSCGKD-----S-----------TVKLW 136 (228)
Q Consensus 103 ~~~~~~-----------------------------~~~i-~~~~~~~~~~~l~~~~~d-----~-----------~i~~w 136 (228)
+..... ...+ ..+++.|...+++.+..+ + .|.-.
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAl 276 (527)
T TIGR03075 197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVAR 276 (527)
T ss_pred ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEE
Confidence 433210 1111 134666766666655421 2 57778
Q ss_pred EccCCeeEEEEecceeeee-------eeEEEECCCCc--EEEEeeCCCCeEEEEEcCCccee
Q 040370 137 EVSSGRLVKQYLGATHTQL-------RFQAVFNDTEE--FVLSIDEPSNEIVIWDALTAEKV 189 (228)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~ 189 (228)
|+++|+..-.++...|... ...+....+++ -+++.+..+|.+++.|.++|+.+
T Consensus 277 d~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 277 DPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 8999998877765433221 12222223554 45656667899999999999875
No 406
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.071 Score=38.48 Aligned_cols=134 Identities=16% Similarity=0.165 Sum_probs=76.5
Q ss_pred CcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE
Q 040370 2 FDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV 81 (228)
Q Consensus 2 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 81 (228)
.|++.+..+.......-.+--.++.. .|++..++..|.-..+.|+.+............. ...-..++.| |++-.
T Consensus 111 vDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~-~~d~~~v~IS--Gn~AY 185 (370)
T COG5276 111 VDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALP-GGDTHDVAIS--GNYAY 185 (370)
T ss_pred EeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccC-CCCceeEEEe--cCeEE
Confidence 46666665555554444444555555 5788887774444568888765422111111111 2333556665 77778
Q ss_pred EEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe
Q 040370 82 TASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR 142 (228)
Q Consensus 82 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 142 (228)
.+..|+-+.+-|+.+......+........+.++..+++..+++.. +.-+.+-|..+.+
T Consensus 186 vA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~s 244 (370)
T COG5276 186 VAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPS 244 (370)
T ss_pred EEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEEecCCCC
Confidence 8888999999999876544333322213367777777665555544 3336666665444
No 407
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.97 E-value=0.062 Score=41.82 Aligned_cols=144 Identities=10% Similarity=0.123 Sum_probs=84.3
Q ss_pred CCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC-------eEEEEecCCeEEEEeCCCCc-ee
Q 040370 30 SGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG-------MYVTASKDGAIRLWDGVSAN-CV 100 (228)
Q Consensus 30 ~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~v~iwd~~~~~-~~ 100 (228)
+.++|+ .|.....++-.|++.|+.+..... ...+ -+.|.|..+ .-+.|-.+..|.--|.+-.. .+
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~-----~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi 551 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDL-----KDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKI 551 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeec-----CCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCce
Confidence 444444 455556677778888887665554 2333 567777532 23345455556556766432 22
Q ss_pred eEE--ecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeE
Q 040370 101 RSI--VGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEI 178 (228)
Q Consensus 101 ~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 178 (228)
... +.........+.. .-.+.+++.++..|-|++||--.-+....+.+ -...+..+....+|.++++++. ..+
T Consensus 552 ~v~esKdY~tKn~Fss~~-tTesGyIa~as~kGDirLyDRig~rAKtalP~--lG~aIk~idvta~Gk~ilaTCk--~yl 626 (776)
T COG5167 552 KVVESKDYKTKNKFSSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTALPG--LGDAIKHIDVTANGKHILATCK--NYL 626 (776)
T ss_pred eeeeehhccccccccccc-cccCceEEEecCCCceeeehhhcchhhhcCcc--cccceeeeEeecCCcEEEEeec--ceE
Confidence 221 1111122222222 22456899999999999999533222222222 4566777888899999999886 788
Q ss_pred EEEEcC
Q 040370 179 VIWDAL 184 (228)
Q Consensus 179 ~i~d~~ 184 (228)
.+-|++
T Consensus 627 lL~d~~ 632 (776)
T COG5167 627 LLTDVP 632 (776)
T ss_pred EEEecc
Confidence 888764
No 408
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.92 E-value=0.12 Score=39.45 Aligned_cols=146 Identities=14% Similarity=0.108 Sum_probs=76.8
Q ss_pred cceEEEEEeCCCCEEEEec-----------CCC-eEEEEEcccc--eEEeeeccceeeeccceeeEEeCCCCCeEEEEec
Q 040370 20 HNVRSVSFHPSGDFLLAGT-----------DHP-IAHLYDVNTF--QCYLSANVPEISVNGAINQVRYSSTGGMYVTASK 85 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~-----------~d~-~i~vw~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 85 (228)
.....|+|.++|+.+++-. ..+ .|.+++-.++ +..... ..... ....+.+++.+++ +++ ++.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~-vfa~~-l~~p~Gi~~~~~G-lyV-~~~ 89 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSN-VFAEE-LSMVTGLAVAVGG-VYV-ATP 89 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeE-EeecC-CCCccceeEecCC-EEE-eCC
Confidence 5677899999999877643 223 6777765432 211111 11111 2345789998888 444 444
Q ss_pred CCeEEEEeCCCC-----ceeeE---Eecc--cccceeEEEEECCCCCEEEEeeCC-------------------CeEEEE
Q 040370 86 DGAIRLWDGVSA-----NCVRS---IVGA--HGTAEATSANFTKDQRFVLSCGKD-------------------STVKLW 136 (228)
Q Consensus 86 dg~v~iwd~~~~-----~~~~~---~~~~--~~~~~i~~~~~~~~~~~l~~~~~d-------------------~~i~~w 136 (228)
....++.|.... +.... +... +.......+.|.|||.+.++-+.. +.|.-+
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 444444454321 11111 2111 012346789999999876654421 345555
Q ss_pred EccCCeeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370 137 EVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID 172 (228)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
|...++. ..+.. .......++|++++..+++-.
T Consensus 170 ~pdg~~~-e~~a~--G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 170 NPDGGKL-RVVAH--GFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ecCCCeE-EEEec--CcCCCccceECCCCCEEEEcc
Confidence 6554432 22211 223345688889887766533
No 409
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.011 Score=49.95 Aligned_cols=118 Identities=7% Similarity=-0.007 Sum_probs=78.1
Q ss_pred cceeEEEEECCCCCEEE--EeeCCCeEEEEEccCCeeEE-----EEe----cceeeeeeeEEEECCCCcEEEEeeCCCCe
Q 040370 109 TAEATSANFTKDQRFVL--SCGKDSTVKLWEVSSGRLVK-----QYL----GATHTQLRFQAVFNDTEEFVLSIDEPSNE 177 (228)
Q Consensus 109 ~~~i~~~~~~~~~~~l~--~~~~d~~i~~wd~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 177 (228)
..++..+...+|+...+ ..+.+-.|..||+++-..-. -+. .........++.|+|.-....+....|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 45666677777765443 33344579999998632211 011 11134455677888877766666667899
Q ss_pred EEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 178 IVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 178 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
|++..+........- ..-....++++|+|.|+.++.|-..|++.-|...
T Consensus 180 l~V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred hhhhhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 998877544333322 2445678999999999999999999999877643
No 410
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.73 E-value=0.14 Score=37.69 Aligned_cols=187 Identities=12% Similarity=0.118 Sum_probs=88.5
Q ss_pred ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCcee
Q 040370 21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCV 100 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 100 (228)
...++.|.. .+.+++| ..+. .+...+.++.-........- .+....+....++...+ .+..|.|..= .+.++.-
T Consensus 63 ~l~~I~f~~-~~g~ivG-~~g~-ll~T~DgG~tW~~v~l~~~l-pgs~~~i~~l~~~~~~l-~~~~G~iy~T-~DgG~tW 136 (302)
T PF14870_consen 63 HLNSISFDG-NEGWIVG-EPGL-LLHTTDGGKTWERVPLSSKL-PGSPFGITALGDGSAEL-AGDRGAIYRT-TDGGKTW 136 (302)
T ss_dssp EEEEEEEET-TEEEEEE-ETTE-EEEESSTTSS-EE----TT--SS-EEEEEEEETTEEEE-EETT--EEEE-SSTTSSE
T ss_pred eEEEEEecC-CceEEEc-CCce-EEEecCCCCCcEEeecCCCC-CCCeeEEEEcCCCcEEE-EcCCCcEEEe-CCCCCCe
Confidence 366777764 3344444 4453 35555555544333221100 22233343333443333 3445554432 2344444
Q ss_pred eEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEE
Q 040370 101 RSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI 180 (228)
Q Consensus 101 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i 180 (228)
+.+... ....+..+..++++.+++++.......-||.........-.. ....+..+.|.|++...+++. .|.|++
T Consensus 137 ~~~~~~-~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~--~~~riq~~gf~~~~~lw~~~~--Gg~~~~ 211 (302)
T PF14870_consen 137 QAVVSE-TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRN--SSRRIQSMGFSPDGNLWMLAR--GGQIQF 211 (302)
T ss_dssp EEEE-S-----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEEET--TTEEEE
T ss_pred eEcccC-CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccC--ccceehhceecCCCCEEEEeC--CcEEEE
Confidence 443332 256788888999999998887777677888643222222111 456788899999988877653 488887
Q ss_pred EE-cCCcceeEE--eec-CCCCCcEEEEeCCCCcEEEEecCC
Q 040370 181 WD-ALTAEKVAK--WSS-NHIGAPRWIEHSPAEAAFITCGTD 218 (228)
Q Consensus 181 ~d-~~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~s~~~d 218 (228)
=+ ....+.... ... ...-.+..++|.+++...++|+..
T Consensus 212 s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 212 SDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred ccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 76 222222221 101 122347889999988877766643
No 411
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.73 E-value=0.013 Score=28.85 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=25.5
Q ss_pred cceeeEEeCCCC---CeEEEEecCCeEEEEeCCC
Q 040370 66 GAINQVRYSSTG---GMYVTASKDGAIRLWDGVS 96 (228)
Q Consensus 66 ~~i~~~~~~~~~---~~l~~~~~dg~v~iwd~~~ 96 (228)
+.|.+++|+|+. .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999853 4788777789999999985
No 412
>PHA02790 Kelch-like protein; Provisional
Probab=96.66 E-value=0.24 Score=39.34 Aligned_cols=183 Identities=8% Similarity=-0.048 Sum_probs=87.1
Q ss_pred CCCEEEEecCCC-----eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC--CeEEEEeCCCCceeeE
Q 040370 30 SGDFLLAGTDHP-----IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD--GAIRLWDGVSANCVRS 102 (228)
Q Consensus 30 ~~~~l~~~~~d~-----~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~v~iwd~~~~~~~~~ 102 (228)
++..+++|+.++ .+..||..+++-......+.. ......+. -++...+.|+.+ ..+..||..+++....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~--r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSP--RLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCch--hhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 455667777543 566788877654333322211 11122222 256777777754 3578888766543222
Q ss_pred EecccccceeEEEEECCCCCEEEEeeCCC---eEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEE
Q 040370 103 IVGAHGTAEATSANFTKDQRFVLSCGKDS---TVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIV 179 (228)
Q Consensus 103 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 179 (228)
-......... +++ .-+++..+.|+.++ .+..||.++.+....-........ ..++ .- +..+.+.| |.+.
T Consensus 347 ~~l~~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~-~~-~~~IYv~G---G~~e 418 (480)
T PHA02790 347 PSLLKPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCAL-VF-GRRLFLVG---RNAE 418 (480)
T ss_pred CCCCCCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEE-EE-CCEEEEEC---CceE
Confidence 1111101111 121 22577777777553 477888877654332111101111 1111 12 33444444 3467
Q ss_pred EEEcCCcceeEEeecCC-CCCcEEEEeCCCCcEEEEecCC-----CCEEEeee
Q 040370 180 IWDALTAEKVAKWSSNH-IGAPRWIEHSPAEAAFITCGTD-----RSVRFWKE 226 (228)
Q Consensus 180 i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~ 226 (228)
+||.++.+-...-...+ ......+. -+++..+.||.+ ..+..||.
T Consensus 419 ~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~ 469 (480)
T PHA02790 419 FYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNN 469 (480)
T ss_pred EecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEEC
Confidence 88887654322211111 11222222 267788888764 34667775
No 413
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.65 E-value=0.33 Score=40.95 Aligned_cols=196 Identities=13% Similarity=0.081 Sum_probs=100.1
Q ss_pred cCcceEEEEEeCC--C----CEEEEecCCCeEEEEEc-ccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEE
Q 040370 18 DTHNVRSVSFHPS--G----DFLLAGTDHPIAHLYDV-NTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIR 90 (228)
Q Consensus 18 ~~~~v~~~~~~~~--~----~~l~~~~~d~~i~vw~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 90 (228)
-...|.|++++|- + ++++.|..+..+.+.-. .+.................|.-..+-.+..+|.++..||.+.
T Consensus 529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~ 608 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALL 608 (1096)
T ss_pred ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEE
Confidence 3578999999983 2 26788887766655443 333332222222111133455555655678999999999988
Q ss_pred EEeCC--CCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEE
Q 040370 91 LWDGV--SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFV 168 (228)
Q Consensus 91 iwd~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (228)
.+-+. ++.....-+.+-+..++.--.|+..++.-+-+..|+-..+|.-+ ++....-..-.....+....-+.....+
T Consensus 609 ~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~kev~~~c~f~s~a~~d~l 687 (1096)
T KOG1897|consen 609 YFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSLKEVNHMCPFNSDAYPDSL 687 (1096)
T ss_pred EEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccchHHhhhhcccccccCCceE
Confidence 77554 44332222222224566666666655544444456666666643 4443332111111111111111223344
Q ss_pred EEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEec
Q 040370 169 LSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCG 216 (228)
Q Consensus 169 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 216 (228)
+.+.. +.+.+.-+..-+.+......-...+..+++.+....+++.+
T Consensus 688 ~~~~~--~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s 733 (1096)
T KOG1897|consen 688 ASANG--GALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLS 733 (1096)
T ss_pred EEecC--CceEEEEecchhhcceeeecCCCChhheEecccceEEEEEe
Confidence 44333 77777766544333222123345567777777555555443
No 414
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.64 E-value=0.15 Score=36.70 Aligned_cols=149 Identities=9% Similarity=0.002 Sum_probs=89.6
Q ss_pred cceeeEEeCCCCCeEEEEe---cCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEE-ccCC
Q 040370 66 GAINQVRYSSTGGMYVTAS---KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWE-VSSG 141 (228)
Q Consensus 66 ~~i~~~~~~~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd-~~~~ 141 (228)
..+.+.+++++++.++... ....+.++.. +........ ...+..-.|++++...+....+...+++. ..++
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~---g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLT---GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeecc---CCccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 3688999999998776655 3344555543 333333322 34778889999977766666666666663 3333
Q ss_pred eeEE-EEecceeeeeeeEEEECCCCcEEEEeeC--CCCeEEEEEcC---Cc--ce---eEEeecCCCCCcEEEEeCCCCc
Q 040370 142 RLVK-QYLGATHTQLRFQAVFNDTEEFVLSIDE--PSNEIVIWDAL---TA--EK---VAKWSSNHIGAPRWIEHSPAEA 210 (228)
Q Consensus 142 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~i~d~~---~~--~~---~~~~~~~~~~~v~~~~~~~~~~ 210 (228)
+... ..........+..+.++|+|..++.... .++.|.+--+. .+ .. ...........+..+.|.+++.
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 3222 2221111127889999999998877652 24667666443 22 01 1111123356889999999998
Q ss_pred EEEEecCCC
Q 040370 211 AFITCGTDR 219 (228)
Q Consensus 211 ~l~s~~~dg 219 (228)
+++.+...+
T Consensus 179 L~V~~~~~~ 187 (253)
T PF10647_consen 179 LVVLGRSAG 187 (253)
T ss_pred EEEEeCCCC
Confidence 877766544
No 415
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.56 E-value=0.23 Score=37.92 Aligned_cols=147 Identities=9% Similarity=0.070 Sum_probs=79.4
Q ss_pred cceeeEEeCCCCCeEEEEe-----------cCC-eEEEEeCCC--Cce--eeEEecccccceeEEEEECCCCCEEEEeeC
Q 040370 66 GAINQVRYSSTGGMYVTAS-----------KDG-AIRLWDGVS--ANC--VRSIVGAHGTAEATSANFTKDQRFVLSCGK 129 (228)
Q Consensus 66 ~~i~~~~~~~~~~~l~~~~-----------~dg-~v~iwd~~~--~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 129 (228)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++. ...+... -.....+++.+++ |+.+..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~--l~~p~Gi~~~~~G--lyV~~~ 89 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE--LSMVTGLAVAVGG--VYVATP 89 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC--CCCccceeEecCC--EEEeCC
Confidence 3457789999998776642 223 677775433 222 2233221 3345788898888 444444
Q ss_pred CCeEEEEEccCC-----ee--EE-EEecce--eeeeeeEEEECCCCcEEEEeeCC------------------CCeEEEE
Q 040370 130 DSTVKLWEVSSG-----RL--VK-QYLGAT--HTQLRFQAVFNDTEEFVLSIDEP------------------SNEIVIW 181 (228)
Q Consensus 130 d~~i~~wd~~~~-----~~--~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------------------d~~i~i~ 181 (228)
....++.|.... +. +. .+.... +......+.+.|++...++.+.. .+.|.-+
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 443334454321 11 11 121110 12335678889998877765531 1445556
Q ss_pred EcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCC
Q 040370 182 DALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTD 218 (228)
Q Consensus 182 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 218 (228)
+...++. ..+..+ ......++|+|+|+++++-..+
T Consensus 170 ~pdg~~~-e~~a~G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 170 NPDGGKL-RVVAHG-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ecCCCeE-EEEecC-cCCCccceECCCCCEEEEccCC
Confidence 6544432 233233 3446789999999887764433
No 416
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.087 Score=40.44 Aligned_cols=143 Identities=13% Similarity=0.124 Sum_probs=86.6
Q ss_pred eeEEeCCCCCeEEEEecCCeEEEEeCCCC--ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeE--
Q 040370 69 NQVRYSSTGGMYVTASKDGAIRLWDGVSA--NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLV-- 144 (228)
Q Consensus 69 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-- 144 (228)
+.+-|...++ .+.+-..|.+.-|-+... .....+... ..++|.++.|++|.+.+|.--.+.+|.+++....+..
T Consensus 26 ngvFfDDaNk-qlfavrSggatgvvvkgpndDVpiSfdm~-d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 26 NGVFFDDANK-QLFAVRSGGATGVVVKGPNDDVPISFDMD-DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred cceeeccCcc-eEEEEecCCeeEEEEeCCCCCCCceeeec-CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence 3444543333 333334455555654432 223333332 2669999999999999999999999999987432221
Q ss_pred EEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEec
Q 040370 145 KQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCG 216 (228)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 216 (228)
...+.......+...+|..+....+.. +..+.+|-....+...+....|.-.|+.-.|.++.+.++-++
T Consensus 104 ~~~~ck~k~~~IlGF~W~~s~e~A~i~---~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTSSTEIAFIT---DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHHHhccCcceeEEEEEecCeeEEEEe---cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 122222234457778888775544443 345777776555444444467888899999999877544443
No 417
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.51 E-value=0.15 Score=35.69 Aligned_cols=95 Identities=14% Similarity=0.127 Sum_probs=63.2
Q ss_pred EEEEEeCCCCEEE-EecCCCeEEEEE--cccceEEe-----eeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC
Q 040370 23 RSVSFHPSGDFLL-AGTDHPIAHLYD--VNTFQCYL-----SANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG 94 (228)
Q Consensus 23 ~~~~~~~~~~~l~-~~~~d~~i~vw~--~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~ 94 (228)
+.++|+.+.+.+. +-+.+-+|.-|| ..+|.... .++..........-.++...+|++.+++-..++|...|+
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 4678887666655 456677777777 55554221 111100000112234555668888888888999999999
Q ss_pred CCCceeeEEecccccceeEEEEECC
Q 040370 95 VSANCVRSIVGAHGTAEATSANFTK 119 (228)
Q Consensus 95 ~~~~~~~~~~~~~~~~~i~~~~~~~ 119 (228)
.+|+.+.++... ...+++++|--
T Consensus 241 ~tGK~L~eiklP--t~qitsccFgG 263 (310)
T KOG4499|consen 241 TTGKILLEIKLP--TPQITSCCFGG 263 (310)
T ss_pred CCCcEEEEEEcC--CCceEEEEecC
Confidence 999999999887 67899999975
No 418
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.47 E-value=0.43 Score=40.04 Aligned_cols=162 Identities=14% Similarity=0.088 Sum_probs=91.8
Q ss_pred CCEEEEecCCCeEEEEEcccceEEeeecccee--------eeccceeeEEeCC--CCCeEEEEec----------CCeEE
Q 040370 31 GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEI--------SVNGAINQVRYSS--TGGMYVTASK----------DGAIR 90 (228)
Q Consensus 31 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~--~~~~l~~~~~----------dg~v~ 90 (228)
+..++.++.|+.+.-.|.++|+....+..... .....-..+.-.| .+..++.|+. +|.|+
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 45788888999999999999987765432100 0000000111122 2345666643 68899
Q ss_pred EEeCCCCceeeEEeccc---------------cccee-EEEEECCCCCEEEEee------------------CCCeEEEE
Q 040370 91 LWDGVSANCVRSIVGAH---------------GTAEA-TSANFTKDQRFVLSCG------------------KDSTVKLW 136 (228)
Q Consensus 91 iwd~~~~~~~~~~~~~~---------------~~~~i-~~~~~~~~~~~l~~~~------------------~d~~i~~w 136 (228)
-+|.++|+.+-.+.... ....+ ..++++++...++.+. ..+.|.-.
T Consensus 340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL 419 (764)
T TIGR03074 340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL 419 (764)
T ss_pred EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence 99999999887664310 00111 2344555444444322 23456777
Q ss_pred EccCCeeEEEEecceeeee-------eeEEEECC-CCc--EEEEeeCCCCeEEEEEcCCcceeEEe
Q 040370 137 EVSSGRLVKQYLGATHTQL-------RFQAVFND-TEE--FVLSIDEPSNEIVIWDALTAEKVAKW 192 (228)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~ 192 (228)
|.++|+..-.++...|... ..-+.+.. +++ -++..+..+|.++++|.++|+.+...
T Consensus 420 D~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 420 DATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred eCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 8888888777654222111 11122222 442 24445666899999999999887654
No 419
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.44 E-value=0.076 Score=40.82 Aligned_cols=83 Identities=16% Similarity=0.230 Sum_probs=58.5
Q ss_pred cceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCC-C----------------C-EEEEe
Q 040370 66 GAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD-Q----------------R-FVLSC 127 (228)
Q Consensus 66 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~-~----------------~-~l~~~ 127 (228)
..+.++..+|.+++.++...=|.|.++|+.++..++.+++.. ...+.-+..... . . +++-+
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR-dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR-DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCc-cceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 357889999999988888777999999999998888877643 222211111111 1 1 23456
Q ss_pred eCCCeEEEEEccCCeeEEEEec
Q 040370 128 GKDSTVKLWEVSSGRLVKQYLG 149 (228)
Q Consensus 128 ~~d~~i~~wd~~~~~~~~~~~~ 149 (228)
-.-|.|.||.++++..+..+..
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEEe
Confidence 6788999999999988877754
No 420
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.40 E-value=0.23 Score=36.20 Aligned_cols=204 Identities=12% Similarity=0.182 Sum_probs=115.4
Q ss_pred ceEEEEEeCCCCEEEEecCCCeEEEEEccc------ce-EEeeecccee-eeccceeeEEeCCCCC------------eE
Q 040370 21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNT------FQ-CYLSANVPEI-SVNGAINQVRYSSTGG------------MY 80 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~------~~-~~~~~~~~~~-~~~~~i~~~~~~~~~~------------~l 80 (228)
.-..|+++|.+.+-++....+...+||... .+ .+.....+.. ......+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 456799999888878777788999999861 11 1222221111 1134567777774332 36
Q ss_pred EEEecCCeEEEEeCCCCce-----eeEEecccccceeEEEEECC--CCCEEEEee-CCCeEEEEEccCCeeE--EEEecc
Q 040370 81 VTASKDGAIRLWDGVSANC-----VRSIVGAHGTAEATSANFTK--DQRFVLSCG-KDSTVKLWEVSSGRLV--KQYLGA 150 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~-~d~~i~~wd~~~~~~~--~~~~~~ 150 (228)
+.+++||+|.-|...-... ...+........-..+++.. .+.+|+.+. ..++|.++|-.-.+.. ..+...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7889999999998543222 12221111122234455553 345555554 5688999985422211 001100
Q ss_pred --------------eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee-cCCCCCcEEEEeCC------CC
Q 040370 151 --------------THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS-SNHIGAPRWIEHSP------AE 209 (228)
Q Consensus 151 --------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~------~~ 209 (228)
...-.+.-..-.++...-+.+.+ -|.|.+||. .++.+.++. .+.-...+.++..| .+
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G-~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAG-LGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCC-cceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 01122222333333333333333 489999996 577776662 34555677788766 56
Q ss_pred cEEEEecCCCCEEEeee
Q 040370 210 AAFITCGTDRSVRFWKE 226 (228)
Q Consensus 210 ~~l~s~~~dg~i~vwd~ 226 (228)
.+|+---.||+|..||.
T Consensus 262 ~lLVGNFGDG~InaFD~ 278 (336)
T TIGR03118 262 ALLVGNFGDGTINAYDP 278 (336)
T ss_pred CeEEeecCCceeEEecC
Confidence 77777668999999985
No 421
>PRK13684 Ycf48-like protein; Provisional
Probab=96.37 E-value=0.28 Score=36.88 Aligned_cols=156 Identities=11% Similarity=0.120 Sum_probs=84.2
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN 98 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 98 (228)
...+.++.+.|++.+++++. .|.+..-.-..++......... ...++++.+.++++.++.+ ..|.+++=..+.+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~---~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNS---SRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCC---cccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC
Confidence 34678889988887766655 4544321112222222222211 5678999999998876665 56776543344444
Q ss_pred eeeEEecc--cccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEec-ceeeeeeeEEEECCCCcEEEEeeCCC
Q 040370 99 CVRSIVGA--HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLG-ATHTQLRFQAVFNDTEEFVLSIDEPS 175 (228)
Q Consensus 99 ~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d 175 (228)
.-.....+ .....+.++.+.+++..++ ++.+|.+.. ....++.-..... .........+.+..++..+++ |. .
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~-~ 322 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQ-R 322 (334)
T ss_pred ccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CC-C
Confidence 33322221 1134578888998777555 445665543 3444443322211 111224556666666666554 44 4
Q ss_pred CeEEEEEc
Q 040370 176 NEIVIWDA 183 (228)
Q Consensus 176 ~~i~i~d~ 183 (228)
|.|..|+-
T Consensus 323 G~il~~~~ 330 (334)
T PRK13684 323 GVLLRYVG 330 (334)
T ss_pred ceEEEecC
Confidence 88877763
No 422
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=96.36 E-value=0.12 Score=32.65 Aligned_cols=115 Identities=9% Similarity=0.035 Sum_probs=67.4
Q ss_pred eEEeCCCCCeEEEEecCCeEEEEeCCCC--------ceeeEEecccccceeEEEE---ECC--CCCEEEEeeCCCeEEEE
Q 040370 70 QVRYSSTGGMYVTASKDGAIRLWDGVSA--------NCVRSIVGAHGTAEATSAN---FTK--DQRFVLSCGKDSTVKLW 136 (228)
Q Consensus 70 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~--------~~~~~~~~~~~~~~i~~~~---~~~--~~~~l~~~~~d~~i~~w 136 (228)
.-+|......|+.++.-|.|.|++.... ..+..+.. ...|++++ +.| +...|+.|+. ..+..|
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi---n~~italaaG~l~~~~~~D~LliGt~-t~llaY 78 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI---NQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAY 78 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC---CCceEEEEEEecCCCCCcCEEEEecc-ceEEEE
Confidence 3456666667888888999999987643 23444444 44566665 433 3345666654 569999
Q ss_pred EccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCccee
Q 040370 137 EVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKV 189 (228)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~ 189 (228)
|+.+...+.....+..-..+..-.+......++..|+ +..|.-||..-.+..
T Consensus 79 DV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 79 DVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIF 130 (136)
T ss_pred EcccCchhhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEE
Confidence 9987665544333222222222234443344444455 488888886544443
No 423
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.34 E-value=0.13 Score=42.20 Aligned_cols=119 Identities=12% Similarity=0.149 Sum_probs=76.5
Q ss_pred cceEEEEEeC--CCCEEEEecCCCeEEEEEccc-------c----eE----EeeeccceeeeccceeeEEeC--CCCCeE
Q 040370 20 HNVRSVSFHP--SGDFLLAGTDHPIAHLYDVNT-------F----QC----YLSANVPEISVNGAINQVRYS--STGGMY 80 (228)
Q Consensus 20 ~~v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~-------~----~~----~~~~~~~~~~~~~~i~~~~~~--~~~~~l 80 (228)
..|+-|.... +...|+.+.+||.|.+|..++ . +. ..............++.++++ ...++|
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEE
Confidence 4466665544 567888999999999997632 1 00 000011122235678999998 778899
Q ss_pred EEEecCCeEEEEeCCCC-ceeeEEecccccceeEEEEECCCC---C---EEEEeeCCCeEEEEEc
Q 040370 81 VTASKDGAIRLWDGVSA-NCVRSIVGAHGTAEATSANFTKDQ---R---FVLSCGKDSTVKLWEV 138 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~i~~~~~~~~~---~---~l~~~~~d~~i~~wd~ 138 (228)
|+++....|.||-.... +.......+.+...|.+++|-++. . .+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99998888888865432 111111122235568888887743 2 7888999999999888
No 424
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=0.067 Score=45.53 Aligned_cols=148 Identities=9% Similarity=-0.011 Sum_probs=92.7
Q ss_pred cceEEEEEeCCCCEEEE--ecCCCeEEEEEcccceEEee--------eccceeeeccceeeEEeCCCC-CeEEEEecCCe
Q 040370 20 HNVRSVSFHPSGDFLLA--GTDHPIAHLYDVNTFQCYLS--------ANVPEISVNGAINQVRYSSTG-GMYVTASKDGA 88 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~--~~~d~~i~vw~~~~~~~~~~--------~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~ 88 (228)
-++..+...+|+...++ .+++-.|..||+++...... ....... .....++.|+|.- ...+.+..|+.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek-~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEK-PVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhcc-ccccccccccCCccchhhhhccccc
Confidence 35556666677655543 33445788999876432111 0111111 3345678899853 34677778999
Q ss_pred EEEEeCCCCce-eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce--eeeeeeEEEECCCC
Q 040370 89 IRLWDGVSANC-VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT--HTQLRFQAVFNDTE 165 (228)
Q Consensus 89 v~iwd~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 165 (228)
|++..+..... ...+.. ....++++|+|.|+.++.|-..|++.-|... ++....+.... ....+.+++|-...
T Consensus 180 l~V~~~~~~~~~v~s~p~---t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPV---TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhhcccCc---ccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence 99887653322 222222 5678999999999999999999999999764 34333333221 23567888888877
Q ss_pred cEEEEee
Q 040370 166 EFVLSID 172 (228)
Q Consensus 166 ~~~~~~~ 172 (228)
.++++-+
T Consensus 256 eflvvy~ 262 (1405)
T KOG3630|consen 256 EFLVVYG 262 (1405)
T ss_pred eEEEEec
Confidence 7777644
No 425
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.33 E-value=0.024 Score=27.93 Aligned_cols=31 Identities=29% Similarity=0.495 Sum_probs=26.4
Q ss_pred cceEEEEEeCC-C--CEEEEecCCCeEEEEEccc
Q 040370 20 HNVRSVSFHPS-G--DFLLAGTDHPIAHLYDVNT 50 (228)
Q Consensus 20 ~~v~~~~~~~~-~--~~l~~~~~d~~i~vw~~~~ 50 (228)
+.|+++.|+|+ + ++|+.+-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999984 4 6888888889999999985
No 426
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.25 E-value=0.095 Score=36.71 Aligned_cols=77 Identities=19% Similarity=0.180 Sum_probs=52.3
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeee----cccee------eeccceeeEEeCCCCCeEEEEecCCe
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSA----NVPEI------SVNGAINQVRYSSTGGMYVTASKDGA 88 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~----~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~ 88 (228)
..++..+. .++++|++-+.+|.+++||+.+++..... ..... .....|..+..+.+|.-+++-+ +|.
T Consensus 12 gs~~~~l~--~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~ 88 (219)
T PF07569_consen 12 GSPVSFLE--CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGD 88 (219)
T ss_pred CCceEEEE--eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCC
Confidence 33444444 47889999999999999999998765433 11110 1256788888888887666654 577
Q ss_pred EEEEeCCCCc
Q 040370 89 IRLWDGVSAN 98 (228)
Q Consensus 89 v~iwd~~~~~ 98 (228)
.+.|+..-+.
T Consensus 89 ~y~y~~~L~~ 98 (219)
T PF07569_consen 89 SYSYSPDLGC 98 (219)
T ss_pred EEEeccccce
Confidence 8888865443
No 427
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.18 E-value=0.52 Score=38.86 Aligned_cols=149 Identities=14% Similarity=0.166 Sum_probs=84.8
Q ss_pred CCEEEEecCCCeEEEEEcccceEEee------e-ccce--------e---eeccceeeEEeCC--CCCeEEEEecCCeEE
Q 040370 31 GDFLLAGTDHPIAHLYDVNTFQCYLS------A-NVPE--------I---SVNGAINQVRYSS--TGGMYVTASKDGAIR 90 (228)
Q Consensus 31 ~~~l~~~~~d~~i~vw~~~~~~~~~~------~-~~~~--------~---~~~~~i~~~~~~~--~~~~l~~~~~dg~v~ 90 (228)
.+++++|. .+.|.||++........ + ..+. . .....|+.|.... ....|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66676665 57899999865332110 0 0000 0 0012355554433 445888999999999
Q ss_pred EEeCCC-------C----c---------eeeEEecccccceeEEEEEC--CCCCEEEEeeCCCeEEEEEccCCe-eEEEE
Q 040370 91 LWDGVS-------A----N---------CVRSIVGAHGTAEATSANFT--KDQRFVLSCGKDSTVKLWEVSSGR-LVKQY 147 (228)
Q Consensus 91 iwd~~~-------~----~---------~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~ 147 (228)
+|.+++ . . +...+. ....+++++++ ...+++|+++....|.||-..... .....
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~---v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~ 204 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR---VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHV 204 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee---cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccc
Confidence 996521 1 0 111122 25578999998 778888888888888887665421 11111
Q ss_pred ecceeeeeeeEEEECCCC-----cEEEEeeCCCCeEEEEEc
Q 040370 148 LGATHTQLRFQAVFNDTE-----EFVLSIDEPSNEIVIWDA 183 (228)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~d~~i~i~d~ 183 (228)
..+.+...+.++.|-++. ...+++.+-.|.+.+|++
T Consensus 205 ~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 205 PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 112244445566665443 224444444699998887
No 428
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.16 E-value=0.37 Score=36.19 Aligned_cols=106 Identities=14% Similarity=0.189 Sum_probs=55.0
Q ss_pred ceEEEEEeCCCCEEEEecCCCeEEEEEcccceE---EeeeccceeeeccceeeEEeCCC---CCeEEEEec-C-------
Q 040370 21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQC---YLSANVPEISVNGAINQVRYSST---GGMYVTASK-D------- 86 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~-d------- 86 (228)
..++|+|.|+++.+++ ...|.|++++ ..+.. +................++++|+ ..+|..... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4678999999877665 5599999999 34433 22221111111557889999994 233333332 1
Q ss_pred -CeEEEEeCCCC-------cee-eEEec-ccccceeEEEEECCCCCEEEEee
Q 040370 87 -GAIRLWDGVSA-------NCV-RSIVG-AHGTAEATSANFTKDQRFVLSCG 128 (228)
Q Consensus 87 -g~v~iwd~~~~-------~~~-~~~~~-~~~~~~i~~~~~~~~~~~l~~~~ 128 (228)
..|.-|....+ +.+ ..+.. ....-....+.|.||+.+.++.+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G 132 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG 132 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence 23444444332 111 11122 01122346699999997666655
No 429
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.13 E-value=0.45 Score=36.82 Aligned_cols=144 Identities=9% Similarity=0.126 Sum_probs=83.4
Q ss_pred CCeEEEEecCCeEEEEeCCCCc-----eeeEEecccccceeEEEEECC----CCCEEEEeeCCCeEEEEEccCC--e---
Q 040370 77 GGMYVTASKDGAIRLWDGVSAN-----CVRSIVGAHGTAEATSANFTK----DQRFVLSCGKDSTVKLWEVSSG--R--- 142 (228)
Q Consensus 77 ~~~l~~~~~dg~v~iwd~~~~~-----~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~d~~i~~wd~~~~--~--- 142 (228)
...+++|+..|.++||+...+. .+.+.+. +.+|..+..-+ .....++.-.-+.+.+|.+... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l---~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL---KDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEec---CCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence 4589999999999999986543 2222222 56777766432 2223333356677888887321 1
Q ss_pred ----eEEEEecceeeeeeeEEEEC----CCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEE
Q 040370 143 ----LVKQYLGATHTQLRFQAVFN----DTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFIT 214 (228)
Q Consensus 143 ----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 214 (228)
.+.....|.-......++.- ..++..++.-+.||.+.+|+-+.......+ .. .--...+.+.+..+.|++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~l-p~-~llPgPl~Y~~~tDsfvt 191 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFL-PD-FLLPGPLCYCPRTDSFVT 191 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEc-CC-CCCCcCeEEeecCCEEEE
Confidence 12222222222222333322 233566666777999999996554433333 22 222334678888888999
Q ss_pred ecCCCCEEEee
Q 040370 215 CGTDRSVRFWK 225 (228)
Q Consensus 215 ~~~dg~i~vwd 225 (228)
++.+..+.-|+
T Consensus 192 ~sss~~l~~Yk 202 (418)
T PF14727_consen 192 ASSSWTLECYK 202 (418)
T ss_pred ecCceeEEEec
Confidence 98888777765
No 430
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.07 E-value=0.33 Score=34.80 Aligned_cols=119 Identities=11% Similarity=0.116 Sum_probs=76.6
Q ss_pred cceeeEEeCCCCCeEEEEecCC--eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee
Q 040370 66 GAINQVRYSSTGGMYVTASKDG--AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL 143 (228)
Q Consensus 66 ~~i~~~~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 143 (228)
.-...+.|..++.++-+.+.-| .|+.+|+.+++......... ..---.++.. +++...-.-.++...+||..+.+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEE-CCEEEEEEecCCeEEEEccccceE
Confidence 3456778867787777777666 69999999998876665532 2222344444 344555666889999999999998
Q ss_pred EEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe
Q 040370 144 VKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW 192 (228)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 192 (228)
+.++.-.. . -..++ .++..++.+.+ ...++++|..+.+....+
T Consensus 123 ~~~~~y~~-E--GWGLt--~dg~~Li~SDG-S~~L~~~dP~~f~~~~~i 165 (264)
T PF05096_consen 123 IGTFPYPG-E--GWGLT--SDGKRLIMSDG-SSRLYFLDPETFKEVRTI 165 (264)
T ss_dssp EEEEE-SS-S----EEE--ECSSCEEEE-S-SSEEEEE-TTT-SEEEEE
T ss_pred EEEEecCC-c--ceEEE--cCCCEEEEECC-ccceEEECCcccceEEEE
Confidence 88886532 2 23333 45666777666 489999998877665554
No 431
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.36 Score=35.09 Aligned_cols=162 Identities=12% Similarity=0.145 Sum_probs=95.6
Q ss_pred eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370 12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL 91 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 91 (228)
.+....-.+-+..+.++ +++...+..+.-++|.|+.+............ .+--.++.. .|++...+..|.-+.+
T Consensus 79 l~~~i~~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt--~gyaygv~v--sGn~aYVadlddgfLi 152 (370)
T COG5276 79 LLSVINARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT--DGYAYGVYV--SGNYAYVADLDDGFLI 152 (370)
T ss_pred eEEEEehhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccC--CceEEEEEe--cCCEEEEeeccCcEEE
Confidence 34444455667777775 56677777777799999987653222221110 233344555 4888888886666778
Q ss_pred EeCCCCceee---EEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeee-eeeEEEECCCCcE
Q 040370 92 WDGVSANCVR---SIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQ-LRFQAVFNDTEEF 167 (228)
Q Consensus 92 wd~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 167 (228)
.|+.+.+... ..... ...-..++.+ |++-..+..|+-+.+.|+.+......+ ++.... ....+..+++..+
T Consensus 153 vdvsdpssP~lagrya~~--~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli-~~~n~g~g~~sv~vsdnr~y 227 (370)
T COG5276 153 VDVSDPSSPQLAGRYALP--GGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLI-GSYNTGPGTYSVSVSDNRAY 227 (370)
T ss_pred EECCCCCCceeeeeeccC--CCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEE-EEEecCCceEEEEecCCeeE
Confidence 8887654332 22221 2222445554 788888889999999999875543332 222222 5566666666666
Q ss_pred EEEeeCCCCeEEEEEcCCcc
Q 040370 168 VLSIDEPSNEIVIWDALTAE 187 (228)
Q Consensus 168 ~~~~~~~d~~i~i~d~~~~~ 187 (228)
++..+ -.+.+-|..+.+
T Consensus 228 ~vvy~---egvlivd~s~~s 244 (370)
T COG5276 228 LVVYD---EGVLIVDVSGPS 244 (370)
T ss_pred EEEcc---cceEEEecCCCC
Confidence 65532 345666665544
No 432
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=96.05 E-value=0.28 Score=33.86 Aligned_cols=105 Identities=19% Similarity=0.218 Sum_probs=60.1
Q ss_pred CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC---C---eEEEE-eCCC----Ccee
Q 040370 32 DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD---G---AIRLW-DGVS----ANCV 100 (228)
Q Consensus 32 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g---~v~iw-d~~~----~~~~ 100 (228)
+.|..+.....|.+|++...++........ -+.|..+.++..|++++|--++ . .+|+| |.+. .+++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T---v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST---VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc---hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 445444556789999998444333222222 5789999999999999987432 2 56665 2111 1111
Q ss_pred e-E--------------------EecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC
Q 040370 101 R-S--------------------IVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG 141 (228)
Q Consensus 101 ~-~--------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~ 141 (228)
. . +..+- ..++.+++..|-..-|+.|+ ++.+.+|.+...
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecC-CCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 1 1 11111 34566777777333344554 456888877543
No 433
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.05 E-value=0.081 Score=37.05 Aligned_cols=66 Identities=11% Similarity=0.129 Sum_probs=47.9
Q ss_pred ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe------ec-------CCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW------SS-------NHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~------~~-------~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+...+.++++... +|.+++||+++++.+..- .. .....|..+.++.+|.-+++-+ +|....|+..
T Consensus 18 l~~~~~~Ll~iT~-~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITS-SGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeC-CCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 3456777777666 699999999988765443 11 2456788899998888777665 5788888865
Q ss_pred C
Q 040370 228 L 228 (228)
Q Consensus 228 l 228 (228)
|
T Consensus 96 L 96 (219)
T PF07569_consen 96 L 96 (219)
T ss_pred c
Confidence 4
No 434
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.2 Score=38.61 Aligned_cols=105 Identities=9% Similarity=0.114 Sum_probs=63.7
Q ss_pred ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceee--EEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe
Q 040370 65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVR--SIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR 142 (228)
Q Consensus 65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 142 (228)
.++|.++.|++|.+.+|.--.+.+|.+.+....+... ..........|....|+.+ .-+|.....| +-+|-....+
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek 143 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK 143 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh
Confidence 6799999999999999999999999999874322221 1112222456888999876 4455554444 6666554322
Q ss_pred -eEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370 143 -LVKQYLGATHTQLRFQAVFNDTEEFVLSIDE 173 (228)
Q Consensus 143 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
.++..+. +...+.-..|.++.+.++.+.+
T Consensus 144 rslRlVks--~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 144 RSLRLVKS--HNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hhhhhhhh--cccCccEEEEccccceEeeecc
Confidence 2222222 3344455556666665554433
No 435
>PHA02790 Kelch-like protein; Provisional
Probab=95.91 E-value=0.66 Score=36.90 Aligned_cols=106 Identities=8% Similarity=-0.048 Sum_probs=53.4
Q ss_pred CCCEEEEecCC--CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC---eEEEEeCCCCceeeEEe
Q 040370 30 SGDFLLAGTDH--PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG---AIRLWDGVSANCVRSIV 104 (228)
Q Consensus 30 ~~~~l~~~~~d--~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~ 104 (228)
++...+.|+.+ ..+..||..+++-......+.. ......+.. +|+..+.|+.++ .+..||.++.+-...-.
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~--r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~ 393 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKP--RCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS 393 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCC--CcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCC
Confidence 56666777753 3577788766543322222211 111122222 577777777553 47788887665332211
Q ss_pred cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeE
Q 040370 105 GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLV 144 (228)
Q Consensus 105 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 144 (228)
........ +++ .-+++..+.| |.+.+||.++.+..
T Consensus 394 m~~~r~~~-~~~-~~~~~IYv~G---G~~e~ydp~~~~W~ 428 (480)
T PHA02790 394 TYYPHYKS-CAL-VFGRRLFLVG---RNAEFYCESSNTWT 428 (480)
T ss_pred CCCccccc-eEE-EECCEEEEEC---CceEEecCCCCcEe
Confidence 11101111 221 2245555666 35778998876554
No 436
>PRK10115 protease 2; Provisional
Probab=95.91 E-value=0.84 Score=38.10 Aligned_cols=112 Identities=13% Similarity=0.133 Sum_probs=66.7
Q ss_pred ceeeEEeCCCCCeEEEEe-----cCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC------CeEEE
Q 040370 67 AINQVRYSSTGGMYVTAS-----KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD------STVKL 135 (228)
Q Consensus 67 ~i~~~~~~~~~~~l~~~~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~~ 135 (228)
.+..+.++|++++|+.+. +...+++.|+.++..+..... ... ..++|.+|++.|+....+ ..|+.
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~---~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD---NVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc---Ccc-eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 467788999999877553 224588999988864332222 112 458999998876655432 36888
Q ss_pred EEccCC--eeEEEEecceeeeeeeEEEECCCCcEEEEeeC--CCCeEEEEEc
Q 040370 136 WEVSSG--RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE--PSNEIVIWDA 183 (228)
Q Consensus 136 wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~i~d~ 183 (228)
+++.++ +....+........ .....+.++.+++.... .++.+.+++.
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 888877 33333332212122 23334446766554332 3467888884
No 437
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.87 E-value=0.38 Score=33.78 Aligned_cols=137 Identities=10% Similarity=0.084 Sum_probs=78.0
Q ss_pred ccceeeEEeCCCCCeEEEEecC---------CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEE-EeeCCCeEE
Q 040370 65 NGAINQVRYSSTGGMYVTASKD---------GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVL-SCGKDSTVK 134 (228)
Q Consensus 65 ~~~i~~~~~~~~~~~l~~~~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~ 134 (228)
+.+.+.-..+|+|++++-.-.| |.++.|-.. ..+..+... -.--+.++|+.+.+.+. +-+.+-+|.
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~--v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNC--VGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehh--ccCCccccccccCcEEEEEccCceEEe
Confidence 4567778889999984422222 334444321 111111111 12235688888777655 445666787
Q ss_pred EEE--ccCCee-----EEEEecce--eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEe
Q 040370 135 LWE--VSSGRL-----VKQYLGAT--HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEH 205 (228)
Q Consensus 135 ~wd--~~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 205 (228)
-|| ..+|.. +..++... .....-.++...+|...+++-. .++|...|..+|+.+.++. -....+++++|
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n-g~~V~~~dp~tGK~L~eik-lPt~qitsccF 261 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN-GGTVQKVDPTTGKILLEIK-LPTPQITSCCF 261 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec-CcEEEEECCCCCcEEEEEE-cCCCceEEEEe
Confidence 777 545432 22222210 1111122334455665555444 5999999999999999884 44778999999
Q ss_pred CC
Q 040370 206 SP 207 (228)
Q Consensus 206 ~~ 207 (228)
--
T Consensus 262 gG 263 (310)
T KOG4499|consen 262 GG 263 (310)
T ss_pred cC
Confidence 64
No 438
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=0.61 Score=38.32 Aligned_cols=179 Identities=12% Similarity=0.146 Sum_probs=83.7
Q ss_pred cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce
Q 040370 20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC 99 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 99 (228)
.++-.+.|+.+. .|++...+|++.+|++-.... .............|..+.+..+|-.++ ..+|.+.+-+-.....
T Consensus 84 ~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~i-e~~svg~e~~~~~I~ec~~f~~GVavl--t~~g~v~~i~~~~~~~ 159 (829)
T KOG2280|consen 84 GELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFI-ESNSVGFESQMSDIVECRFFHNGVAVL--TVSGQVILINGVEEPK 159 (829)
T ss_pred CCeeeecccCCc-eEEEEeccceEEEeecchhhh-cccccccccccCceeEEEEecCceEEE--ecCCcEEEEcCCCcch
Confidence 378889998554 566678899999999864332 221111111134465566655663333 3445554443222212
Q ss_pred eeEEec-ccccceeEEEEECCCCC---EEEEee-CCCeEEEEEccCCe-eEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370 100 VRSIVG-AHGTAEATSANFTKDQR---FVLSCG-KDSTVKLWEVSSGR-LVKQYLGATHTQLRFQAVFNDTEEFVLSIDE 173 (228)
Q Consensus 100 ~~~~~~-~~~~~~i~~~~~~~~~~---~l~~~~-~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
..+++. +....+-.|-...+++. .++-.. ..+ ..++-...+. ....+.. ....+..+..+|+.++++.-..
T Consensus 160 ~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~--~~~~~~ki~VS~n~~~laLyt~ 236 (829)
T KOG2280|consen 160 LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSW--PNSSVVKISVSPNRRFLALYTE 236 (829)
T ss_pred hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCC--CCceEEEEEEcCCcceEEEEec
Confidence 222222 11111112222222211 111111 000 1111111111 1111111 2355677888899998887666
Q ss_pred CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeC
Q 040370 174 PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHS 206 (228)
Q Consensus 174 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 206 (228)
.|.|.+-+....+....+...-..+.-.++|.
T Consensus 237 -~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wc 268 (829)
T KOG2280|consen 237 -TGKIWVVSIDLSQILCEFNCTDHDPPKQMAWC 268 (829)
T ss_pred -CCcEEEEecchhhhhhccCCCCCCchHhceee
Confidence 58888888776666555532222333345553
No 439
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.76 E-value=0.52 Score=34.50 Aligned_cols=186 Identities=12% Similarity=0.097 Sum_probs=98.6
Q ss_pred cceEEEEEeCCCC------------EEEEecCCCeEEEEEcccceE---Eeeeccceeeeccce-eeEEeCC--CCCeEE
Q 040370 20 HNVRSVSFHPSGD------------FLLAGTDHPIAHLYDVNTFQC---YLSANVPEISVNGAI-NQVRYSS--TGGMYV 81 (228)
Q Consensus 20 ~~v~~~~~~~~~~------------~l~~~~~d~~i~vw~~~~~~~---~~~~~~~~~~~~~~i-~~~~~~~--~~~~l~ 81 (228)
...+.+.|+.... .++.+++||+|.-|...-+.. .......... .+.| ..+++.. .+.+|.
T Consensus 77 ~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~-~gavYkGLAi~~~~~~~~LY 155 (336)
T TIGR03118 77 GTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQ-QGNVYKGLAVGPTGGGDYLY 155 (336)
T ss_pred CCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCC-CcceeeeeEEeecCCCceEE
Confidence 4677888875333 356778899999998543222 0111110000 1222 3445443 355565
Q ss_pred EEe-cCCeEEEEeCCCCceee--EEecc--------------cccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeE
Q 040370 82 TAS-KDGAIRLWDGVSANCVR--SIVGA--------------HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLV 144 (228)
Q Consensus 82 ~~~-~dg~v~iwd~~~~~~~~--~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 144 (228)
.+. ..++|.++|-.-.+... .+... ...-.|+-..-.++...=+.|..-|.|-+||+ .++.+
T Consensus 156 aadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~ 234 (336)
T TIGR03118 156 AANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLL 234 (336)
T ss_pred EeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEE
Confidence 554 57889999854222110 01000 00111222222333333334445578999997 47788
Q ss_pred EEEecceeeeeeeEEEECC-----CCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCC-----CcEEEEeCC
Q 040370 145 KQYLGATHTQLRFQAVFND-----TEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIG-----APRWIEHSP 207 (228)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----~v~~~~~~~ 207 (228)
+++.....-.....++..| -...++++...||+|..||..+++.+..+...... .++.|+|..
T Consensus 235 ~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 235 RRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred EEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 8775333333333444333 23445666666999999999999888777433222 456777754
No 440
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=95.62 E-value=0.095 Score=40.26 Aligned_cols=166 Identities=16% Similarity=0.162 Sum_probs=99.6
Q ss_pred cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeec---ccee-eEEeCCCCCeEEEEecCCeEEEE-
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVN---GAIN-QVRYSSTGGMYVTASKDGAIRLW- 92 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~---~~i~-~~~~~~~~~~l~~~~~dg~v~iw- 92 (228)
....|..+-..|||+.+..-+. .++.++++.+...... +....... ..|+ .+..-..|.-++.++.||.|.-|
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-kl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF 296 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR-KLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF 296 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh-hhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence 4567888889999999887665 5788998876432211 11111101 1222 22223356678889999999888
Q ss_pred eCCCCc-----eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370 93 DGVSAN-----CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF 167 (228)
Q Consensus 93 d~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (228)
|++.+. .++.++.. ..++..+.-..+.+-+++-+..|++.++.-...+.+-. +. .......+.++|.+.+
T Consensus 297 dvr~~~~p~l~h~R~f~l~--pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~--~~~~~~~~~~Sp~~~~ 371 (733)
T COG4590 297 DVRRDGQPHLNHIRNFKLA--PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ER--AYQAPQLVAMSPNQAY 371 (733)
T ss_pred eeecCCCCcceeeeccccC--cccceeeccccccceEEEEcCCCceeeeecccCcceeh-hh--hhcCcceeeeCcccch
Confidence 554332 12222221 34444443333455677888888888876544333221 11 2234567889999999
Q ss_pred EEEeeCCCCeEEEEEcCCcceeEEe
Q 040370 168 VLSIDEPSNEIVIWDALTAEKVAKW 192 (228)
Q Consensus 168 ~~~~~~~d~~i~i~d~~~~~~~~~~ 192 (228)
+++-. .|.++++.+.+..+..++
T Consensus 372 Ll~e~--~gki~~~~l~Nr~Peisw 394 (733)
T COG4590 372 LLSED--QGKIRLAQLENRNPEISW 394 (733)
T ss_pred heeec--CCceEEEEecCCCCCccH
Confidence 98854 389999998776654443
No 441
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=95.61 E-value=0.16 Score=40.96 Aligned_cols=74 Identities=16% Similarity=0.304 Sum_probs=45.0
Q ss_pred CCCCeEEEEecCCeEEEEeCCC----CceeeEEecc--------------------cccceeEEEEECC----CCCEEEE
Q 040370 75 STGGMYVTASKDGAIRLWDGVS----ANCVRSIVGA--------------------HGTAEATSANFTK----DQRFVLS 126 (228)
Q Consensus 75 ~~~~~l~~~~~dg~v~iwd~~~----~~~~~~~~~~--------------------~~~~~i~~~~~~~----~~~~l~~ 126 (228)
++...++.+..||.+....... +......... ........+++++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3566788888899888877654 2221111110 0123445566666 6789999
Q ss_pred eeCCCeEEEEEccCCeeEEEEe
Q 040370 127 CGKDSTVKLWEVSSGRLVKQYL 148 (228)
Q Consensus 127 ~~~d~~i~~wd~~~~~~~~~~~ 148 (228)
.+.|+++|+||+.+++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999866653
No 442
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.54 E-value=1.2 Score=37.24 Aligned_cols=77 Identities=14% Similarity=0.262 Sum_probs=52.3
Q ss_pred cceeeEEeCCCCCeEEEEecCCeEEEEeCCC---------Cce-e--eEE------ecccccceeEEEEECCC---CCEE
Q 040370 66 GAINQVRYSSTGGMYVTASKDGAIRLWDGVS---------ANC-V--RSI------VGAHGTAEATSANFTKD---QRFV 124 (228)
Q Consensus 66 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~---------~~~-~--~~~------~~~~~~~~i~~~~~~~~---~~~l 124 (228)
-.|..+..+|+|.+++..+..|.+.+.=.+. ++. + +.+ ........|..+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 4688899999999999888866544432211 111 1 111 11123568889999995 5789
Q ss_pred EEeeCCCeEEEEEccCCe
Q 040370 125 LSCGKDSTVKLWEVSSGR 142 (228)
Q Consensus 125 ~~~~~d~~i~~wd~~~~~ 142 (228)
+.-..|+++|+||+...+
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 999999999999997643
No 443
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=95.46 E-value=0.77 Score=34.46 Aligned_cols=151 Identities=10% Similarity=0.126 Sum_probs=86.1
Q ss_pred CcceEEEEEeCCCCEEEEecCCCe------EEEEEcccc----eEEeee---c--cceee----eccceeeEEeCCCCCe
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPI------AHLYDVNTF----QCYLSA---N--VPEIS----VNGAINQVRYSSTGGM 79 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~------i~vw~~~~~----~~~~~~---~--~~~~~----~~~~i~~~~~~~~~~~ 79 (228)
-+.+..+.+.|++..+++.+++|. +...++... ..+... . ...+. ..-...+|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 367889999976666777777777 555555431 111100 0 00000 0113457888777877
Q ss_pred EEEEecC------CeEEEEeCCCCceeeEEe-------------cccccceeEEEEECCCCCEEEEeeCC-----C--e-
Q 040370 80 YVTASKD------GAIRLWDGVSANCVRSIV-------------GAHGTAEATSANFTKDQRFVLSCGKD-----S--T- 132 (228)
Q Consensus 80 l~~~~~d------g~v~iwd~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~~~~l~~~~~d-----~--~- 132 (228)
+++.-.+ ..|..++.. |+....+. ........-+++++|+++.|+++.+. + .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 7776666 788888876 65544431 11235567899999999977666432 2 1
Q ss_pred ------EEE--EEccC-CeeEEEE--ecce-----eeeeeeEEEECCCCcEEEE
Q 040370 133 ------VKL--WEVSS-GRLVKQY--LGAT-----HTQLRFQAVFNDTEEFVLS 170 (228)
Q Consensus 133 ------i~~--wd~~~-~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~ 170 (228)
+++ ||..+ ++....+ .... ....+..+.+-+++++++.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 444 55544 3222222 2211 2455677888888887665
No 444
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.44 E-value=0.0016 Score=49.72 Aligned_cols=142 Identities=16% Similarity=0.225 Sum_probs=95.4
Q ss_pred eeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEE-EeeCCCeEEEEEccCCeeEEEE
Q 040370 69 NQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVL-SCGKDSTVKLWEVSSGRLVKQY 147 (228)
Q Consensus 69 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~ 147 (228)
....|-|.+.-++.++.+..+..|| +.++....... ++....++|..++..++ .+-..+.+.+||+.+... ..+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n~---tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqL 112 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYD-KAGQVILELNP---TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQL 112 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhh-hhcceecccCC---chhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHH
Confidence 3456777766688888889999999 45555555444 45667788888776544 455678899999975322 222
Q ss_pred ecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCC
Q 040370 148 LGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDR 219 (228)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 219 (228)
... ....-.-..|++....++... ..+.+.+++..+.+..... ..|...+.++++.+.+. .+.++.|.
T Consensus 113 E~g-g~~s~sll~wsKg~~el~ig~-~~gn~viynhgtsR~iiv~-Gkh~RRgtq~av~lEd~-vil~dcd~ 180 (615)
T KOG2247|consen 113 ESG-GTSSKSLLAWSKGTPELVIGN-NAGNIVIYNHGTSRRIIVM-GKHQRRGTQIAVTLEDY-VILCDCDN 180 (615)
T ss_pred hcc-CcchHHHHhhccCCccccccc-cccceEEEeccchhhhhhh-cccccceeEEEecccce-eeecCcHH
Confidence 211 111222366777777777754 4699999999888777766 34889999999998664 44444443
No 445
>PRK13684 Ycf48-like protein; Provisional
Probab=95.40 E-value=0.82 Score=34.44 Aligned_cols=153 Identities=11% Similarity=0.108 Sum_probs=84.6
Q ss_pred ccceeeEEeCCCCCeEEEEecCCeEEE-EeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee
Q 040370 65 NGAINQVRYSSTGGMYVTASKDGAIRL-WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL 143 (228)
Q Consensus 65 ~~~i~~~~~~~~~~~l~~~~~dg~v~i-wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 143 (228)
...+..+.+.|++.+++++. .|.+.. +| ..++........ ....++++.+.++++.++.+ ..|.+++=....+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~-~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRN-SSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCC-CcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45688899999887665554 455543 22 222333333332 25688999999988876665 567664323333332
Q ss_pred EEEEecc--eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee--cCCCCCcEEEEeCCCCcEEEEecCCC
Q 040370 144 VKQYLGA--THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS--SNHIGAPRWIEHSPAEAAFITCGTDR 219 (228)
Q Consensus 144 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg 219 (228)
-.....+ ........+.+.+++..+++ +. +|.+. .....++.-.... ..-......+.|..+++.++ .+..|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~-~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G 323 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAG-GG-NGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRG 323 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEE-cC-CCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCc
Confidence 2221111 01233566778887765554 44 46555 3444444433331 12223577788776666555 55678
Q ss_pred CEEEee
Q 040370 220 SVRFWK 225 (228)
Q Consensus 220 ~i~vwd 225 (228)
.|.-|+
T Consensus 324 ~il~~~ 329 (334)
T PRK13684 324 VLLRYV 329 (334)
T ss_pred eEEEec
Confidence 877665
No 446
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=95.34 E-value=0.84 Score=34.16 Aligned_cols=67 Identities=7% Similarity=0.047 Sum_probs=35.5
Q ss_pred CCCeEEEEec-----CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCC----eEEEEEccCCee
Q 040370 76 TGGMYVTASK-----DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS----TVKLWEVSSGRL 143 (228)
Q Consensus 76 ~~~~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~~wd~~~~~~ 143 (228)
+++..+.|+. ...+..||+.+.+-...-.... ...........+++..+.|+.++ .+..||+++.+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 4666666664 2468888988765332211111 11111122233567777777654 356889887654
No 447
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.32 E-value=0.017 Score=47.76 Aligned_cols=166 Identities=12% Similarity=0.057 Sum_probs=90.8
Q ss_pred ecCcceEEEEEeC-CCCEEEEecCCCeEEEEEccc--ceEE----eeeccceeeeccceeeEEeCC---CCCeEEEEecC
Q 040370 17 QDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNT--FQCY----LSANVPEISVNGAINQVRYSS---TGGMYVTASKD 86 (228)
Q Consensus 17 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~--~~~~----~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d 86 (228)
+.++.|-.+.|-. +...++ -.-|.+.||+++- |+.. .....+. ...+.-+.|.| +.-++..+-.+
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~---gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPY---GSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcC---CCCcceeeecccccccceeeeccCC
Confidence 4567777777743 323333 3346788998763 3321 1111111 33445555655 55677778888
Q ss_pred CeEEEEeCCCCceeeEEeccc---------ccceeEEEEECCCCCEEEEeeCCCeEEEEEcc-----CCeeEEEEeccee
Q 040370 87 GAIRLWDGVSANCVRSIVGAH---------GTAEATSANFTKDQRFVLSCGKDSTVKLWEVS-----SGRLVKQYLGATH 152 (228)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~-----~~~~~~~~~~~~~ 152 (228)
+.+++....+... ..+..|. ..+.+.--..+|||..++.++.||.+++|.+. ..+++...+.+..
T Consensus 205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~ 283 (1283)
T KOG1916|consen 205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK 283 (1283)
T ss_pred CceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC
Confidence 9998887654322 1122221 01112222379999999999999998888653 2334444444332
Q ss_pred eeeeeEEEECCC---------CcEEEEeeCCCCeEEEEEcCCccee
Q 040370 153 TQLRFQAVFNDT---------EEFVLSIDEPSNEIVIWDALTAEKV 189 (228)
Q Consensus 153 ~~~~~~~~~~~~---------~~~~~~~~~~d~~i~i~d~~~~~~~ 189 (228)
...++.. +... -.+++.+...+..+++|....-+++
T Consensus 284 ~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 284 HPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 2222222 3322 2344555555678888886655554
No 448
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=95.29 E-value=0.61 Score=33.22 Aligned_cols=131 Identities=8% Similarity=0.076 Sum_probs=73.6
Q ss_pred EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC---CeEEEEEccC----CeeEEEEecceeeeeeeEEEE
Q 040370 89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD---STVKLWEVSS----GRLVKQYLGATHTQLRFQAVF 161 (228)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~~wd~~~----~~~~~~~~~~~~~~~~~~~~~ 161 (228)
-.+||+.+++... +.... ..-+.+-.+-+||+.+.+|+.. ..+++++... .........-...........
T Consensus 48 s~~yD~~tn~~rp-l~v~t-d~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 48 SVEYDPNTNTFRP-LTVQT-DTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEecCCCcEEe-ccCCC-CCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 4578988876432 32221 3344455678899999988752 3588887644 111111000112333445556
Q ss_pred CCCCcEEEEeeCCCCeEEEEEcCCc-ceeEE--eec-----CCCCCcEEEEeCCCCcEEEEecCCCCE
Q 040370 162 NDTEEFVLSIDEPSNEIVIWDALTA-EKVAK--WSS-----NHIGAPRWIEHSPAEAAFITCGTDRSV 221 (228)
Q Consensus 162 ~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~--~~~-----~~~~~v~~~~~~~~~~~l~s~~~dg~i 221 (228)
-++|+.++.+|.......+|.-+.. ..... +.. ....--.-+...|+|++++.+..+..|
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i 193 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSII 193 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEE
Confidence 6899999998887666777765321 11111 111 011122346678999999998876544
No 449
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.29 E-value=0.61 Score=32.29 Aligned_cols=100 Identities=9% Similarity=0.203 Sum_probs=59.9
Q ss_pred CEEEEeeCCCeEEEEEccC--CeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC-----eEEEE-EcCCc----cee
Q 040370 122 RFVLSCGKDSTVKLWEVSS--GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN-----EIVIW-DALTA----EKV 189 (228)
Q Consensus 122 ~~l~~~~~d~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-----~i~i~-d~~~~----~~~ 189 (228)
+.|+.+.....|.+|++.+ .+...++. .-+.+..+.++..|+|+++.-.... .+|+| +.+.. .++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~---Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS---TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc---chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 3444445667899999983 33445554 3467789999999999998754322 45665 22211 111
Q ss_pred E---------------------EeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeee
Q 040370 190 A---------------------KWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 190 ~---------------------~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~ 226 (228)
. .....-..++.+++..| .|++++ |+ ++.+.+|.+
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l 162 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTL 162 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEE
Confidence 1 11112345677888888 555554 43 457888875
No 450
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.16 E-value=1.1 Score=34.59 Aligned_cols=148 Identities=10% Similarity=0.068 Sum_probs=81.1
Q ss_pred eeeEEeCCCCCeEEEEecCCeEEEEeCCCCcee-eEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe----
Q 040370 68 INQVRYSSTGGMYVTASKDGAIRLWDGVSANCV-RSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR---- 142 (228)
Q Consensus 68 i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~---- 142 (228)
...+..++++.+++.+.....++-|| .++.. ....... ...+.++.+.+++..++++ .+|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~-~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRAS-ARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEED 315 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCC-ccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccc
Confidence 34455667777666665433333444 23321 2222222 5678899999998877665 5565433 333343
Q ss_pred -eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee--cCCCCCcEEEEeCCCCcEEEEecCCC
Q 040370 143 -LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS--SNHIGAPRWIEHSPAEAAFITCGTDR 219 (228)
Q Consensus 143 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg 219 (228)
.............+..+.+.+++..+++ |. .|.+..-. ..++.-.... ..-....+.+.|.++++.+++ +.+|
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~-~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G 391 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAA-GG-SGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDG 391 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEE-EC-CCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCc
Confidence 1222221112234677788877776665 44 37665543 4454433332 223457889999777665555 5678
Q ss_pred CEEEe
Q 040370 220 SVRFW 224 (228)
Q Consensus 220 ~i~vw 224 (228)
.|.-|
T Consensus 392 ~il~~ 396 (398)
T PLN00033 392 VLLRY 396 (398)
T ss_pred EEEEe
Confidence 76554
No 451
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.08 E-value=0.0036 Score=47.88 Aligned_cols=139 Identities=19% Similarity=0.243 Sum_probs=89.6
Q ss_pred eEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCCeEEEEeCCCCcee
Q 040370 22 VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDGAIRLWDGVSANCV 100 (228)
Q Consensus 22 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~ 100 (228)
.....|-|.+.-++.++.+..+..||-.. +....... .+....++|..++..++ .+-..+.+.+||+.+....
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n~-----tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAG-QVILELNP-----TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhc-ceecccCC-----chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence 34456778777788888888898998554 32222222 45567788888776544 5567789999999765322
Q ss_pred eEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370 101 RSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS 170 (228)
Q Consensus 101 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
+.-.+. ...-.-+.|++....++.+...+.+.+++..+.+.+...-. |.....+.++.+.+..+..
T Consensus 111 qLE~gg--~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gk--h~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 111 QLESGG--TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGK--HQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred HHhccC--cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcc--cccceeEEEecccceeeec
Confidence 221121 11122277898888899998999999999876655443322 4555666777666555443
No 452
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.06 E-value=0.68 Score=36.45 Aligned_cols=145 Identities=9% Similarity=0.081 Sum_probs=86.6
Q ss_pred CCCCeEE-EEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCC-------EEEEeeCCCeEEEEEccC-CeeEE
Q 040370 75 STGGMYV-TASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR-------FVLSCGKDSTVKLWEVSS-GRLVK 145 (228)
Q Consensus 75 ~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~d~~i~~wd~~~-~~~~~ 145 (228)
.+..+++ .|.....++-.|++.|+.+..+..+. .+ -+.|.|+.+ .-+.|-.+..|.-.|.+. |..+.
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~d---dv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKD---DV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCC---cc-eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence 3444443 55666778888999999999888753 23 567777532 234555666677777764 32222
Q ss_pred EEecce-eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370 146 QYLGAT-HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224 (228)
Q Consensus 146 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 224 (228)
...... ....-.+........|+++++. .|.|++|| |-|....+...+....|..+..+.+|+++++.+.. .+.+-
T Consensus 553 v~esKdY~tKn~Fss~~tTesGyIa~as~-kGDirLyD-Rig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~ 629 (776)
T COG5167 553 VVESKDYKTKNKFSSGMTTESGYIAAASR-KGDIRLYD-RIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLT 629 (776)
T ss_pred eeeehhccccccccccccccCceEEEecC-CCceeeeh-hhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEE
Confidence 221100 1111122222345567777555 69999999 44544444446777889999999999987766543 44444
Q ss_pred ee
Q 040370 225 KE 226 (228)
Q Consensus 225 d~ 226 (228)
|+
T Consensus 630 d~ 631 (776)
T COG5167 630 DV 631 (776)
T ss_pred ec
Confidence 43
No 453
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.06 E-value=0.048 Score=45.27 Aligned_cols=119 Identities=13% Similarity=0.211 Sum_probs=70.0
Q ss_pred cceEEEEEeC---CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceee-----------EEeCCCCCeEEEEec
Q 040370 20 HNVRSVSFHP---SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQ-----------VRYSSTGGMYVTASK 85 (228)
Q Consensus 20 ~~v~~~~~~~---~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~~l~~~~~ 85 (228)
..+.-+.|.| +..++..+-.++.+++....+... .....| ...+.. -..+|||+.|++++.
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsH-s~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~ 255 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR----SLFRSH-SQRVTDMAFFAEGVLKLASLSPDGTVFAWAIS 255 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechHHH----HHHHhc-CCCcccHHHHhhchhhheeeCCCCcEEEEeec
Confidence 3445566655 677888888899999887765332 111112 222222 236899999999999
Q ss_pred CCeEEEEeCC-----CCceeeEEecccccceeEEEEECCCCC---------EEEEe-eCCCeEEEEEccCCeeE
Q 040370 86 DGAIRLWDGV-----SANCVRSIVGAHGTAEATSANFTKDQR---------FVLSC-GKDSTVKLWEVSSGRLV 144 (228)
Q Consensus 86 dg~v~iwd~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~l~~~-~~d~~i~~wd~~~~~~~ 144 (228)
||.++.|.+. .-++....+.|.....+..+ ++.+.. +++++ ..+..+++|.....+++
T Consensus 256 dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 256 DGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 9999888653 23344555554322233333 443221 23333 34556888887665555
No 454
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.98 E-value=1.7 Score=37.91 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=29.5
Q ss_pred cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceE
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQC 53 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~ 53 (228)
-......++|+|....+|.++..|.|+++-...-+.
T Consensus 34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~ 69 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEF 69 (993)
T ss_pred CCCCCcceeeccccceEEEEEecccEEEecccceEE
Confidence 345677899999999999999999999998665443
No 455
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.95 E-value=1.9 Score=36.14 Aligned_cols=79 Identities=18% Similarity=0.258 Sum_probs=53.4
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEccc----------ceEEe---eec----cceeeeccceeeEEeCCC---CC
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNT----------FQCYL---SAN----VPEISVNGAINQVRYSST---GG 78 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~----------~~~~~---~~~----~~~~~~~~~i~~~~~~~~---~~ 78 (228)
.-.|..+.++|+|.++|..+..|.. |-.+.. ++... ... ....+....|..+.|+|. +.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 4578999999999999988876644 444421 11111 110 011122457889999996 57
Q ss_pred eEEEEecCCeEEEEeCCCCc
Q 040370 79 MYVTASKDGAIRLWDGVSAN 98 (228)
Q Consensus 79 ~l~~~~~dg~v~iwd~~~~~ 98 (228)
.|+.-..|+.+++||+...+
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 89999999999999997644
No 456
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=94.88 E-value=0.19 Score=40.54 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=45.0
Q ss_pred CCCCEEEEecCCCeEEEEEccc----ceEEeeecccee------------------eeccceeeEEeCC----CCCeEEE
Q 040370 29 PSGDFLLAGTDHPIAHLYDVNT----FQCYLSANVPEI------------------SVNGAINQVRYSS----TGGMYVT 82 (228)
Q Consensus 29 ~~~~~l~~~~~d~~i~vw~~~~----~~~~~~~~~~~~------------------~~~~~i~~~~~~~----~~~~l~~ 82 (228)
++...++.+..||.+....... +........... ........++.++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4677888888899888887664 111111100000 0023345566665 6779999
Q ss_pred EecCCeEEEEeCCCCceeeEEe
Q 040370 83 ASKDGAIRLWDGVSANCVRSIV 104 (228)
Q Consensus 83 ~~~dg~v~iwd~~~~~~~~~~~ 104 (228)
.+.|+.+|+||+.+++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999866553
No 457
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.87 E-value=0.57 Score=29.75 Aligned_cols=114 Identities=6% Similarity=0.034 Sum_probs=64.9
Q ss_pred EEEEeCCCCEEEEecCCCeEEEEEcccceEEee---eccceeeeccceeeEEeCC-----CCCeEEEEecCCeEEEEeCC
Q 040370 24 SVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLS---ANVPEISVNGAINQVRYSS-----TGGMYVTASKDGAIRLWDGV 95 (228)
Q Consensus 24 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~v~iwd~~ 95 (228)
.-.|......|++++.-|.|.|++......... ...........|++++-.+ +...|+.|+. ..+..||+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence 345666667888888999999998764321110 0111112256677775433 2446666664 679999998
Q ss_pred CCceeeEEecccccceeEEEEEC---C-CCCEEEEeeCCCeEEEEEccCCe
Q 040370 96 SANCVRSIVGAHGTAEATSANFT---K-DQRFVLSCGKDSTVKLWEVSSGR 142 (228)
Q Consensus 96 ~~~~~~~~~~~~~~~~i~~~~~~---~-~~~~l~~~~~d~~i~~wd~~~~~ 142 (228)
+...+..-.. ...+.++.+- . +...++.| .+-.|.-||..-.+
T Consensus 82 ~N~d~Fyke~---~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e 128 (136)
T PF14781_consen 82 NNSDLFYKEV---PDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNE 128 (136)
T ss_pred cCchhhhhhC---ccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcE
Confidence 8765543333 3445555543 2 23444444 45566667654433
No 458
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.86 E-value=2.3 Score=36.64 Aligned_cols=177 Identities=7% Similarity=-0.004 Sum_probs=91.0
Q ss_pred eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC--eEEEEe-----------cCCeEEEEeCC-CCceeeEEeccc
Q 040370 42 IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG--MYVTAS-----------KDGAIRLWDGV-SANCVRSIVGAH 107 (228)
Q Consensus 42 ~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~-----------~dg~v~iwd~~-~~~~~~~~~~~~ 107 (228)
.|++.|..+++.+...........-.+..+.|+.... ++++|. .+|.++.|++- +++.+.-+..
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~-- 931 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHK-- 931 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeec--
Confidence 4777887777765555444332233566677765433 333332 23456666653 3332222211
Q ss_pred ccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcC-Cc
Q 040370 108 GTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL-TA 186 (228)
Q Consensus 108 ~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~ 186 (228)
..-+-.-.+..|-..++++| ....+++||+...+++++.+....+..+..+.+ .+..++++...++ +.++-.+ ..
T Consensus 932 T~~~~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeS-V~~~~y~~~~ 1007 (1205)
T KOG1898|consen 932 TEIPGPVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQES-VHFVRYRRED 1007 (1205)
T ss_pred cCCCccceEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccce-EEEEEEecCC
Confidence 12222234556656665555 457899999988777766654333444544443 4566777666544 3333332 33
Q ss_pred ceeEEee-cCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 187 EKVAKWS-SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 187 ~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
+.+..+. ..-...|+++.+- |...+|.+..=|.+.+-+
T Consensus 1008 n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR 1046 (1205)
T KOG1898|consen 1008 NQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVR 1046 (1205)
T ss_pred CeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEE
Confidence 3343332 1223345555443 444566666656555443
No 459
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=94.81 E-value=2.2 Score=36.23 Aligned_cols=163 Identities=12% Similarity=0.178 Sum_probs=96.4
Q ss_pred ecCcceEEEEEe---C----CCCEEEEecCCCeEEEEEcccce---------------EEeeeccceeeeccceeeEEeC
Q 040370 17 QDTHNVRSVSFH---P----SGDFLLAGTDHPIAHLYDVNTFQ---------------CYLSANVPEISVNGAINQVRYS 74 (228)
Q Consensus 17 ~~~~~v~~~~~~---~----~~~~l~~~~~d~~i~vw~~~~~~---------------~~~~~~~~~~~~~~~i~~~~~~ 74 (228)
....+|..|+|. . ...+|++=. ...+.|+...-.+ ++..+...... ..+...++|+
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tg-g~~~aDv~Fn 154 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTG-GFPHADVAFN 154 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcC-CCccceEEec
Confidence 457899999998 2 223555544 4566777722111 11222211111 4467889999
Q ss_pred C-CCCeEEEEecCCeEEEEeCCCCc----eeeEEecc---------cccceeEEEEECCCCCEEEEeeCCCeEEEEEccC
Q 040370 75 S-TGGMYVTASKDGAIRLWDGVSAN----CVRSIVGA---------HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS 140 (228)
Q Consensus 75 ~-~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 140 (228)
| +.+.||.....|...||++.... ........ ........+.|.++.+.|+.++. ..+.++|+++
T Consensus 155 P~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~ 233 (765)
T PF10214_consen 155 PWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFES 233 (765)
T ss_pred cCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCC
Confidence 9 56689999999999999992111 11111111 11123347888888788887765 4689999987
Q ss_pred CeeEEEEecceeeeeeeEEEECCC--CcEEEEeeCCCCeEEEEEcCC
Q 040370 141 GRLVKQYLGATHTQLRFQAVFNDT--EEFVLSIDEPSNEIVIWDALT 185 (228)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~i~d~~~ 185 (228)
......+........+..+.-++. +..++. .+ ..|...|+..
T Consensus 234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts--~eiiw~~~~~ 277 (765)
T PF10214_consen 234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TS--KEIIWLDVKS 277 (765)
T ss_pred CCccchhccCCChhheeeEEecCCccceEEEE-ec--CeEEEEEccC
Confidence 765332333335566777777776 223333 22 6677778766
No 460
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.76 E-value=0.21 Score=24.26 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=26.1
Q ss_pred CCCcEEEEeeCCCCeEEEEEcCCcceeEEeec
Q 040370 163 DTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS 194 (228)
Q Consensus 163 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 194 (228)
|+++.++++...++.|.++|..+++....+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 56788888887789999999988888877743
No 461
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.37 E-value=1.9 Score=33.43 Aligned_cols=149 Identities=10% Similarity=0.138 Sum_probs=79.6
Q ss_pred eEEEEEeCCCCEEEEecCCCeEEEEEcccceEE-eeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc--
Q 040370 22 VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCY-LSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN-- 98 (228)
Q Consensus 22 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-- 98 (228)
...+..++++.+++.+..-..++-|| .+... ....... ...+..+.|.+++..++++ .+|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~---~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~ 313 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRAS---ARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTE 313 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCC---ccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcc
Confidence 44456667777777666433222233 23221 2222221 5678999999998877665 5566544 333443
Q ss_pred ---eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe-cceeeeeeeEEEECCCCcEEEEeeCC
Q 040370 99 ---CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL-GATHTQLRFQAVFNDTEEFVLSIDEP 174 (228)
Q Consensus 99 ---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
.............+.++.|.+++..+++| ..|.+..-. ..++.-.... ........+.+.|.++++-.++ |.
T Consensus 314 ~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~- 389 (398)
T PLN00033 314 EDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GN- 389 (398)
T ss_pred cccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-eC-
Confidence 22222222123458889999877755555 667655543 4444323222 1112344567777776665555 44
Q ss_pred CCeEEEE
Q 040370 175 SNEIVIW 181 (228)
Q Consensus 175 d~~i~i~ 181 (228)
+|.|.-|
T Consensus 390 ~G~il~~ 396 (398)
T PLN00033 390 DGVLLRY 396 (398)
T ss_pred CcEEEEe
Confidence 4776654
No 462
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=94.34 E-value=2 Score=33.77 Aligned_cols=109 Identities=11% Similarity=0.101 Sum_probs=60.5
Q ss_pred cceeeEEeCCCCCeEEEEecCCeEEEEeCCCCcee--eEEe---cccccceeEEEEECCCC------CEEEEee------
Q 040370 66 GAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCV--RSIV---GAHGTAEATSANFTKDQ------RFVLSCG------ 128 (228)
Q Consensus 66 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~--~~~~---~~~~~~~i~~~~~~~~~------~~l~~~~------ 128 (228)
...+.|+|.|++++|++--..|.|++++..++... ..+. ..........++++|+- .+|+...
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence 34688999999987776654699999986554321 1111 11125667899999873 2444332
Q ss_pred ----CCCeEEEEEccCC--e---eEEEEecc--eeeeeeeEEEECCCCcEEEEeeCC
Q 040370 129 ----KDSTVKLWEVSSG--R---LVKQYLGA--THTQLRFQAVFNDTEEFVLSIDEP 174 (228)
Q Consensus 129 ----~d~~i~~wd~~~~--~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
....|.-|.+... . ....+... ........+.|.|++...+++|..
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1234544554321 1 11111110 112234567799999877777653
No 463
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=94.29 E-value=3 Score=35.49 Aligned_cols=119 Identities=12% Similarity=0.061 Sum_probs=75.7
Q ss_pred CcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceE-----Eeeeccceeee------ccceeeEEeCCCCCeEEEEecC
Q 040370 19 THNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQC-----YLSANVPEISV------NGAINQVRYSSTGGMYVTASKD 86 (228)
Q Consensus 19 ~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~-----~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~d 86 (228)
..+...++|+| +...||+....|.-.||++..... ........++. ...-..+.|.++.+.|+.++.
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r- 223 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR- 223 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-
Confidence 34788899999 667999999999999999922111 11010000110 122346789888777887765
Q ss_pred CeEEEEeCCCCceeeEEecccccceeEEEEECCC--CCEEEEeeCCCeEEEEEccC
Q 040370 87 GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD--QRFVLSCGKDSTVKLWEVSS 140 (228)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~wd~~~ 140 (228)
..+.++|+++......+........|..+.-+|. +..++-. ...|...|+..
T Consensus 224 ~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 224 SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 5788999987765332333333677888888886 2333332 36788888876
No 464
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.14 E-value=1.9 Score=32.54 Aligned_cols=106 Identities=15% Similarity=0.215 Sum_probs=56.1
Q ss_pred ceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce---eeEEe--cccccceeEEEEECCC---CCEEEEeeC-C-------
Q 040370 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANC---VRSIV--GAHGTAEATSANFTKD---QRFVLSCGK-D------- 130 (228)
Q Consensus 67 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~--~~~~~~~i~~~~~~~~---~~~l~~~~~-d------- 130 (228)
..+.|+|.|+|++++ +...|.|++++ ..+.. +..+. ..........++++|+ ..+|+.... .
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 357899999987665 45699999999 44443 22221 1123557799999994 334433332 1
Q ss_pred -CeEEEEEccCC-------eeEE-EEec-ceeeeeeeEEEECCCCcEEEEeeCC
Q 040370 131 -STVKLWEVSSG-------RLVK-QYLG-ATHTQLRFQAVFNDTEEFVLSIDEP 174 (228)
Q Consensus 131 -~~i~~wd~~~~-------~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
..|.-|....+ +.+. .+.. .........+.|.|++...++.|..
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 23444544433 1111 1111 0122344568899999777776653
No 465
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=94.12 E-value=1.7 Score=32.12 Aligned_cols=88 Identities=13% Similarity=0.114 Sum_probs=57.1
Q ss_pred EEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC--------------------
Q 040370 71 VRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-------------------- 130 (228)
Q Consensus 71 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------------------- 130 (228)
-.|+ +|++.++=+..|.+.-+|.++|+....... ++....++|. |.++++|-..
T Consensus 208 PRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~v---pG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~ 281 (335)
T TIGR03032 208 PRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFL---PGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALG 281 (335)
T ss_pred CcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEEC---CCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhc
Confidence 3455 677788888889999999888876555444 4456778887 7776655321
Q ss_pred CeEEEEEccCCeeEEEEecceeeeeeeEEEECCC
Q 040370 131 STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT 164 (228)
Q Consensus 131 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (228)
.-|.+.|+++|..+..++-...-..++.+..-|.
T Consensus 282 CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 282 CGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred ccEEEEECCCCCEEEEEEeCCceeEEEEEEEecC
Confidence 2366777777777666654434445555555554
No 466
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.12 E-value=3 Score=34.84 Aligned_cols=69 Identities=14% Similarity=0.251 Sum_probs=47.2
Q ss_pred cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEe
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD 93 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd 93 (228)
....++++.-+|.+..++.+..||.|++|+............ ..+-..+.|...| ++++..|..+.-|.
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~-----~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE-----AKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh-----cCCccceeeeccc--eEEEeccchhheee
Confidence 345678888899999999999999999999876443221111 2233445565555 66666777777775
No 467
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=94.05 E-value=0.88 Score=30.59 Aligned_cols=30 Identities=7% Similarity=0.072 Sum_probs=24.5
Q ss_pred CCCcEEEEeCCCC------cEEEEecCCCCEEEeee
Q 040370 197 IGAPRWIEHSPAE------AAFITCGTDRSVRFWKE 226 (228)
Q Consensus 197 ~~~v~~~~~~~~~------~~l~s~~~dg~i~vwd~ 226 (228)
...+.+++|||.| .+|++...+|.|.||..
T Consensus 85 ~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~ 120 (173)
T PF12657_consen 85 SSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP 120 (173)
T ss_pred cccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence 3478999999943 47888999999999964
No 468
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=93.81 E-value=2.6 Score=33.16 Aligned_cols=61 Identities=8% Similarity=0.075 Sum_probs=39.8
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeecccee---eeccceeeEEeCCCC
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEI---SVNGAINQVRYSSTG 77 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~ 77 (228)
..-.....|+|.|++++|++--..|.|++++..++........+.. .-.+....|+++|+-
T Consensus 27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 3456788999999998777665469999998665432222111111 015678999999874
No 469
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=1.5 Score=30.32 Aligned_cols=191 Identities=13% Similarity=0.100 Sum_probs=98.2
Q ss_pred eEEEeecCcce--EEEEEeCCCCEEEEecC--CCeEEEEEcccceEEeeeccce-eeeccceeeEEeCCCCCeE-EEEec
Q 040370 12 AFRVIQDTHNV--RSVSFHPSGDFLLAGTD--HPIAHLYDVNTFQCYLSANVPE-ISVNGAINQVRYSSTGGMY-VTASK 85 (228)
Q Consensus 12 ~~~~~~~~~~v--~~~~~~~~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l-~~~~~ 85 (228)
+.+...|...- ..+.+. ++.++.+.+. ...|++||+.+++......... .-....++.+ +..+ .-.-.
T Consensus 36 vi~~yphDs~sfTQGL~~~-~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~-----gd~~y~LTw~ 109 (262)
T COG3823 36 VIRTYPHDSTSFTQGLEYL-DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL-----GDYFYQLTWK 109 (262)
T ss_pred EEEeccCchhhhhcceeee-CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec-----cceEEEEEec
Confidence 44444554432 234443 4555555543 4579999999988766555431 1111222211 2222 22336
Q ss_pred CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeE---EEEC
Q 040370 86 DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQ---AVFN 162 (228)
Q Consensus 86 dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~---~~~~ 162 (228)
+|.-..+|.++.+.+..+.. .+.-..++. |++.|+.++...+++.-|.++.....+........++.. +.|-
T Consensus 110 egvaf~~d~~t~~~lg~~~y---~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V 184 (262)
T COG3823 110 EGVAFKYDADTLEELGRFSY---EGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV 184 (262)
T ss_pred cceeEEEChHHhhhhccccc---CCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee
Confidence 78888999998888877766 334455543 455577776666777777765443333322111222211 1111
Q ss_pred CCCcEEEEeeCCCCeEEEEEcCCcceeEEe-----------ecCCCCCcEEEEeCCCC-cEEEEe
Q 040370 163 DTEEFVLSIDEPSNEIVIWDALTAEKVAKW-----------SSNHIGAPRWIEHSPAE-AAFITC 215 (228)
Q Consensus 163 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-----------~~~~~~~v~~~~~~~~~-~~l~s~ 215 (228)
+|...+- --.+..|...|..+|+.+..+ ...+..-.+.+++.|++ ++++||
T Consensus 185 -dG~lyAN-Vw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 185 -DGELYAN-VWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred -ccEEEEe-eeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 1221111 111234444455555544332 12455567889999977 555555
No 470
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.60 E-value=3 Score=33.17 Aligned_cols=78 Identities=12% Similarity=0.135 Sum_probs=51.7
Q ss_pred ceeeEEeCCCCCeEEEEecCCeEEEEeC---------CCCceee---------EEecccccceeEEEEECCCC---CEEE
Q 040370 67 AINQVRYSSTGGMYVTASKDGAIRLWDG---------VSANCVR---------SIVGAHGTAEATSANFTKDQ---RFVL 125 (228)
Q Consensus 67 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~---------~~~~~~~---------~~~~~~~~~~i~~~~~~~~~---~~l~ 125 (228)
.|..+..++.|..++-++.+|.+.++=. +.++... .+......-.+.-.+|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4667788999999998889997766531 2232111 11111123456678899965 5777
Q ss_pred EeeCCCeEEEEEccCCeeE
Q 040370 126 SCGKDSTVKLWEVSSGRLV 144 (228)
Q Consensus 126 ~~~~d~~i~~wd~~~~~~~ 144 (228)
.-+.|..||+||+.....+
T Consensus 185 iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEecCcEEEEEecCCcchh
Confidence 7888999999999765544
No 471
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.50 E-value=0.43 Score=23.11 Aligned_cols=32 Identities=9% Similarity=0.182 Sum_probs=23.7
Q ss_pred CCCCeEEEEe-cCCeEEEEeCCCCceeeEEecc
Q 040370 75 STGGMYVTAS-KDGAIRLWDGVSANCVRSIVGA 106 (228)
Q Consensus 75 ~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~ 106 (228)
|+++.++++. .++.|.++|..+++....+...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 5666565544 5789999999888887777663
No 472
>PLN02193 nitrile-specifier protein
Probab=93.25 E-value=3.5 Score=32.82 Aligned_cols=112 Identities=10% Similarity=0.095 Sum_probs=53.8
Q ss_pred CCCEEEEecCC-----CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC-----eEEEEeCCCCce
Q 040370 30 SGDFLLAGTDH-----PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG-----AIRLWDGVSANC 99 (228)
Q Consensus 30 ~~~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~~ 99 (228)
++..++.|+.+ ..+.++|+.+.+-..............-.+++. -++++++.|+.++ .+..||+.+.+-
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 45555666654 357788888765433221100000111112222 2456666666543 467788776543
Q ss_pred eeEEec---ccccceeEEEEECCCCCEEEEeeCC----CeEEEEEccCCeeE
Q 040370 100 VRSIVG---AHGTAEATSANFTKDQRFVLSCGKD----STVKLWEVSSGRLV 144 (228)
Q Consensus 100 ~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~~wd~~~~~~~ 144 (228)
...-.. ...... ..++. -+++.++.++.+ ..+.+||+.+.+..
T Consensus 307 ~~~~~~~~~~~~R~~-~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W~ 356 (470)
T PLN02193 307 FHCSTPGDSFSIRGG-AGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKWT 356 (470)
T ss_pred EeCCCCCCCCCCCCC-cEEEE-ECCcEEEEECCCCCccCceEEEECCCCEEE
Confidence 221100 000111 11221 246666666655 45899999886654
No 473
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=93.18 E-value=4.2 Score=33.56 Aligned_cols=169 Identities=10% Similarity=0.098 Sum_probs=88.8
Q ss_pred cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC------CCeEEEEec-C---C
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST------GGMYVTASK-D---G 87 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~-d---g 87 (228)
-.+.|..+.|.++++.+++...+|.|.+||...+...........+ ...+.-=.|-++ ..++++-+. + -
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~-~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~ 206 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKS-SINVSYSKFVNDFELENGKDLLLTVSQLSNSKL 206 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccccccccc-ccceehhhhhcccccccCCceEEEEEEcCCCcE
Confidence 4678999999999999999999999999999433322211111111 111111123221 234444443 2 3
Q ss_pred eEEEEeCC-CCceeeEEecc-cccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecce---ee-eeeeEEE
Q 040370 88 AIRLWDGV-SANCVRSIVGA-HGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT---HT-QLRFQAV 160 (228)
Q Consensus 88 ~v~iwd~~-~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~---~~-~~~~~~~ 160 (228)
..+++.+. .......+... ..........|.. +|....- .+++|.+|++.+.+...++.... .. ....++.
T Consensus 207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 46777771 22223333200 0011222223333 4443322 67899999998877766665331 11 1223333
Q ss_pred ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe
Q 040370 161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW 192 (228)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 192 (228)
.|..+.++.+. ++.|++.|+.-...+.++
T Consensus 285 -~~s~nRvLLs~--~nkIyLld~~~~siLse~ 313 (670)
T PF10395_consen 285 -PPSPNRVLLSV--NNKIYLLDLKFESILSEF 313 (670)
T ss_pred -cCCCCeEEEEc--CCEEEEEeehhhhhhhhh
Confidence 23444444433 489999998765555544
No 474
>PLN02193 nitrile-specifier protein
Probab=92.94 E-value=3.9 Score=32.55 Aligned_cols=140 Identities=7% Similarity=-0.019 Sum_probs=62.4
Q ss_pred CCCeEEEEecC-----CeEEEEeCCCCceeeEEecc--cccceeEEEEECCCCCEEEEeeCCC-----eEEEEEccCCee
Q 040370 76 TGGMYVTASKD-----GAIRLWDGVSANCVRSIVGA--HGTAEATSANFTKDQRFVLSCGKDS-----TVKLWEVSSGRL 143 (228)
Q Consensus 76 ~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~ 143 (228)
++.+.+.|+.+ ..+..+|+.+.+-...-... .....-.+++. -+++.++.|+.++ .+..||+.+.+.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 45566666654 35888898876533221110 00111122222 2456666776543 467888877654
Q ss_pred EEEEec--ceeeeeeeEEEECCCCcEEEEeeCC---CCeEEEEEcCCcceeEEeecC---CCCCcEEEEeCCCCcEEEEe
Q 040370 144 VKQYLG--ATHTQLRFQAVFNDTEEFVLSIDEP---SNEIVIWDALTAEKVAKWSSN---HIGAPRWIEHSPAEAAFITC 215 (228)
Q Consensus 144 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~ 215 (228)
...-.. .........+.. -++...+..|.. -..+.+||+.+.+-......+ ......++ ..-++++++.|
T Consensus 307 ~~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~G 384 (470)
T PLN02193 307 FHCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFG 384 (470)
T ss_pred EeCCCCCCCCCCCCCcEEEE-ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEEC
Confidence 321110 000000111111 134444444431 146889998776533221100 01111111 22256778888
Q ss_pred cCC
Q 040370 216 GTD 218 (228)
Q Consensus 216 ~~d 218 (228)
+.+
T Consensus 385 G~~ 387 (470)
T PLN02193 385 GEI 387 (470)
T ss_pred Ccc
Confidence 853
No 475
>PLN02153 epithiospecifier protein
Probab=92.84 E-value=3.2 Score=31.34 Aligned_cols=112 Identities=13% Similarity=0.173 Sum_probs=53.4
Q ss_pred CCCEEEEecCC-------CeEEEEEcccceEEeeeccceeeecc--ceeeEEeCCCCCeEEEEecC-----CeEEEEeCC
Q 040370 30 SGDFLLAGTDH-------PIAHLYDVNTFQCYLSANVPEISVNG--AINQVRYSSTGGMYVTASKD-----GAIRLWDGV 95 (228)
Q Consensus 30 ~~~~l~~~~~d-------~~i~vw~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d-----g~v~iwd~~ 95 (228)
+++.++.|+.+ ..+.+||+.+.+-............. ....+.+ ++++++.|+.+ ..+.+||+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 45666666653 35778888776533221111000000 1122233 45666676643 357888987
Q ss_pred CCceeeEEecc----cccceeEEEEECCCCCEEEEeeCC-----------CeEEEEEccCCeeE
Q 040370 96 SANCVRSIVGA----HGTAEATSANFTKDQRFVLSCGKD-----------STVKLWEVSSGRLV 144 (228)
Q Consensus 96 ~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d-----------~~i~~wd~~~~~~~ 144 (228)
+.+-...-... .....-.+++. -+++.++.|+.+ ..+.+||+++.+..
T Consensus 110 t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 172 (341)
T PLN02153 110 KNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV 172 (341)
T ss_pred CCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence 65433211100 00111122222 245666676653 24778898876543
No 476
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=92.77 E-value=5.3 Score=33.66 Aligned_cols=92 Identities=13% Similarity=0.193 Sum_probs=49.3
Q ss_pred EEEEECCCCCEEEEeeCCC-----eEEEEEccCCeeEEEEe-cceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCc
Q 040370 113 TSANFTKDQRFVLSCGKDS-----TVKLWEVSSGRLVKQYL-GATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA 186 (228)
Q Consensus 113 ~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 186 (228)
.-+.|-|.|..+++-..|| .|.++.- +|-.-..+. ...........+|+.....++.+- .+.+.+|-..+-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~--~n~~~lwttkNy 326 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE--GNLLKLWTTKNY 326 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHHHHHHhh--cceEEEEEccce
Confidence 3478999999999887665 2445442 221111110 000122334455555555444433 378999987665
Q ss_pred ceeEEeecCCCCCcEEEEeCCC
Q 040370 187 EKVAKWSSNHIGAPRWIEHSPA 208 (228)
Q Consensus 187 ~~~~~~~~~~~~~v~~~~~~~~ 208 (228)
.-.... ......+.-+.|+|.
T Consensus 327 hWYLK~-e~~ip~~s~vkwhpe 347 (1243)
T COG5290 327 HWYLKV-ERQIPGISYVKWHPE 347 (1243)
T ss_pred EEEEEE-eecCCCcceeeeccc
Confidence 443333 233445666788884
No 477
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.70 E-value=0.58 Score=22.35 Aligned_cols=32 Identities=13% Similarity=0.332 Sum_probs=20.4
Q ss_pred EeecCcceEEEEEeCCCCEEEEec-CC--CeEEEE
Q 040370 15 VIQDTHNVRSVSFHPSGDFLLAGT-DH--PIAHLY 46 (228)
Q Consensus 15 ~~~~~~~v~~~~~~~~~~~l~~~~-~d--~~i~vw 46 (228)
+......-....|+|||+.|+-++ .+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334566778899999999887544 44 555554
No 478
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.48 E-value=0.33 Score=40.01 Aligned_cols=68 Identities=16% Similarity=0.289 Sum_probs=46.8
Q ss_pred ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEE
Q 040370 65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWE 137 (228)
Q Consensus 65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd 137 (228)
...++++.-+|.++.++.++.||.|++|+....+..+.... ..+-..+.|...| |++...|+.+.-|.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~---~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE---AKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh---cCCccceeeeccc--eEEEeccchhheee
Confidence 45677888899999999999999999999765544322222 2233445565444 66666777777776
No 479
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=92.13 E-value=3.6 Score=30.19 Aligned_cols=56 Identities=9% Similarity=0.197 Sum_probs=39.4
Q ss_pred CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEee------CCCeEEEEEccCCee
Q 040370 86 DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCG------KDSTVKLWEVSSGRL 143 (228)
Q Consensus 86 dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~d~~i~~wd~~~~~~ 143 (228)
-..|++||..+.+-...-..- .+.|+.+.|..+.+.++.|. ....+..||+.+...
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i--~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGI--SGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CCEEEEEECCCCEeecCCCCc--eEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 346999998776644433332 67899999987777776664 355788999887654
No 480
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.05 E-value=4.1 Score=30.66 Aligned_cols=161 Identities=14% Similarity=0.205 Sum_probs=91.9
Q ss_pred ccceeeEEeCCCCCeEEEEecCCe------EEEEeCCC--C--cee-----eEEeccc------ccceeEEEEECCCCCE
Q 040370 65 NGAINQVRYSSTGGMYVTASKDGA------IRLWDGVS--A--NCV-----RSIVGAH------GTAEATSANFTKDQRF 123 (228)
Q Consensus 65 ~~~i~~~~~~~~~~~l~~~~~dg~------v~iwd~~~--~--~~~-----~~~~~~~------~~~~i~~~~~~~~~~~ 123 (228)
-+.+..+.+.|++..+++.+.+|. +...++.. + ..+ ..+.... .....-++++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 456788999876666777777777 66555543 1 111 1111110 0113347788778888
Q ss_pred EEEeeCC------CeEEEEEccCCeeEEEEec-------------ceeeeeeeEEEECCCCcEEEEeeCC----CC--e-
Q 040370 124 VLSCGKD------STVKLWEVSSGRLVKQYLG-------------ATHTQLRFQAVFNDTEEFVLSIDEP----SN--E- 177 (228)
Q Consensus 124 l~~~~~d------~~i~~wd~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~----d~--~- 177 (228)
+++.-.+ ..|+.++.. |+....+.. .......-.++.+|++..+++.... |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8877777 788888876 665544421 1233455678999999965554321 22 1
Q ss_pred ------EEE--EEcCC-cceeEEe--ecC------CCCCcEEEEeCCCCcEEEEec-----CCCCEEEeee
Q 040370 178 ------IVI--WDALT-AEKVAKW--SSN------HIGAPRWIEHSPAEAAFITCG-----TDRSVRFWKE 226 (228)
Q Consensus 178 ------i~i--~d~~~-~~~~~~~--~~~------~~~~v~~~~~~~~~~~l~s~~-----~dg~i~vwd~ 226 (228)
+++ ||..+ ++....+ ... ....+..+.+-+++++|+.=- ....++|+.+
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v 248 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV 248 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence 444 55544 3222222 111 356788899999998776422 2345666554
No 481
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.90 E-value=6.6 Score=32.76 Aligned_cols=173 Identities=12% Similarity=0.113 Sum_probs=79.3
Q ss_pred CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEec--ccccceeEEEEEC
Q 040370 41 PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVG--AHGTAEATSANFT 118 (228)
Q Consensus 41 ~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~i~~~~~~ 118 (228)
..|+|++.. |.......-. ...+-.+.|+.+. .|+.-..+|++++|++- |+.+..... ......|..+.+.
T Consensus 64 ~~I~If~~s-G~lL~~~~w~----~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f 136 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWK----HGELIGMGWSDDE-ELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFF 136 (829)
T ss_pred eeEEEEecc-ccchHHHHhc----CCCeeeecccCCc-eEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEe
Confidence 457777764 3333322221 3478889999665 47777899999999975 333322111 1112234444444
Q ss_pred CCCCEEEEeeCCCeEEEE-EccCCeeEEEEec-ceeeeeeeEEEECCC--CcEEEE-eeCCCCeEEEEEcCCcc-eeEEe
Q 040370 119 KDQRFVLSCGKDSTVKLW-EVSSGRLVKQYLG-ATHTQLRFQAVFNDT--EEFVLS-IDEPSNEIVIWDALTAE-KVAKW 192 (228)
Q Consensus 119 ~~~~~l~~~~~d~~i~~w-d~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~-~~~~d~~i~i~d~~~~~-~~~~~ 192 (228)
.+|-.+.+ .+|.+.+- +... ..+.++.. +.......+....++ ...++. .....+ ..++....+. ....+
T Consensus 137 ~~GVavlt--~~g~v~~i~~~~~-~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 137 HNGVAVLT--VSGQVILINGVEE-PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHAL 212 (829)
T ss_pred cCceEEEe--cCCcEEEEcCCCc-chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccccccccc
Confidence 45533333 34544443 2222 12222211 001111122222222 112211 111000 1111111111 11122
Q ss_pred ecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 193 SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 193 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
....+.+..+..||+.++|+-=..+|.|.+-+
T Consensus 213 -~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs 244 (829)
T KOG2280|consen 213 -SWPNSSVVKISVSPNRRFLALYTETGKIWVVS 244 (829)
T ss_pred -CCCCceEEEEEEcCCcceEEEEecCCcEEEEe
Confidence 12235677788888888888877888776644
No 482
>PLN02153 epithiospecifier protein
Probab=91.86 E-value=4.4 Score=30.63 Aligned_cols=69 Identities=10% Similarity=0.099 Sum_probs=33.5
Q ss_pred CCCEEEEecCC-----CeEEEEEcccceEEeeeccce--eeeccceeeEEeCCCCCeEEEEecC-----------CeEEE
Q 040370 30 SGDFLLAGTDH-----PIAHLYDVNTFQCYLSANVPE--ISVNGAINQVRYSSTGGMYVTASKD-----------GAIRL 91 (228)
Q Consensus 30 ~~~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d-----------g~v~i 91 (228)
+++.++.|+.+ ..+.+||..+.+-........ ......-.+++. -+++.++.|+.+ ..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEE
Confidence 45666666643 357788887755332211100 000011112222 245666666643 24778
Q ss_pred EeCCCCce
Q 040370 92 WDGVSANC 99 (228)
Q Consensus 92 wd~~~~~~ 99 (228)
||+.+.+-
T Consensus 164 yd~~~~~W 171 (341)
T PLN02153 164 YNIADGKW 171 (341)
T ss_pred EECCCCeE
Confidence 88876543
No 483
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.49 E-value=9.8 Score=33.93 Aligned_cols=138 Identities=9% Similarity=0.111 Sum_probs=82.2
Q ss_pred ecCCeEEEEeCCCCceeeEEecccccceeEEEE--------ECCCCCEEEEeeCCCeEEEEEccCCee-------EEEEe
Q 040370 84 SKDGAIRLWDGVSANCVRSIVGAHGTAEATSAN--------FTKDQRFVLSCGKDSTVKLWEVSSGRL-------VKQYL 148 (228)
Q Consensus 84 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~l~~~~~d~~i~~wd~~~~~~-------~~~~~ 148 (228)
+.|..+.+|+.+++.....+.+. ...|..+. |.|.=++++.-+.--.|.++-+.-.+. ...+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~--shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGL--SHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccch--hhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee
Confidence 35789999999997766666554 22333332 333334555544555666665432111 11122
Q ss_pred cceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEc----CCc---c-----------------eeEEeecCCCCCcEEEE
Q 040370 149 GATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDA----LTA---E-----------------KVAKWSSNHIGAPRWIE 204 (228)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~----~~~---~-----------------~~~~~~~~~~~~v~~~~ 204 (228)
....+..+.++....+|+.+++ |. || .+|.+ ..+ + .+..+...+..+|..++
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~-G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFA-GR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEe-ec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 2234566777776777776665 44 46 44433 111 0 01112125677999999
Q ss_pred eCCCCcEEEEecCCCCEEEeeec
Q 040370 205 HSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 205 ~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.......+.+=++.|+|.+|++.
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDIG 272 (1311)
T ss_pred eccccceeeeeccCceEEEEEcc
Confidence 99989999999999999999973
No 484
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=91.39 E-value=9.1 Score=33.35 Aligned_cols=195 Identities=11% Similarity=0.116 Sum_probs=96.8
Q ss_pred cCcceEEEEEeCCC------CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeC---CCC-----C-eEEE
Q 040370 18 DTHNVRSVSFHPSG------DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYS---STG-----G-MYVT 82 (228)
Q Consensus 18 ~~~~v~~~~~~~~~------~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~-----~-~l~~ 82 (228)
-+..|.|+++.++. ++++.|+.|++++++.+....++..+..... ..++.++.+- .++ + ++.+
T Consensus 581 l~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l--~~~~~s~~iv~~~~~~~~~~~~L~l~~ 658 (1205)
T KOG1898|consen 581 LSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGL--SSPPESLCIVEMEATGGTDVAQLYLLI 658 (1205)
T ss_pred eceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEcccccc--CCCccceEEEEecccCCccceeEEEEe
Confidence 45678899998754 5799999999999999987766665543322 3344444442 223 1 5667
Q ss_pred EecCCeEEEE--eCCCCceee---EEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeee
Q 040370 83 ASKDGAIRLW--DGVSANCVR---SIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRF 157 (228)
Q Consensus 83 ~~~dg~v~iw--d~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 157 (228)
|-.+|.+.-. |.-+|+..- .+.+. .+.....+....+...|+..+.+...+ +.+.......+... ......
T Consensus 659 GL~NGvllR~~id~v~G~l~d~rtR~lG~-~pvkLf~~~~~~~s~vL~lSsr~wl~y--~~~~~~h~t~Isy~-~l~~as 734 (1205)
T KOG1898|consen 659 GLRNGVLLRFVIDTVTGQLLDIRTRFLGL-RPVKLFPISMRGQSDVLALSSRPWLLY--TYQQEFHLTPISYS-TLEHAS 734 (1205)
T ss_pred cccccEEEEEEecccccceeeeheeeecc-ccceEEEEeecCcceeEEecCChhhhh--hhcceeeeeccccc-chhccc
Confidence 7777765544 333443221 11111 022223333344445555555544333 33222222222111 111111
Q ss_pred EEEECCCCcEEEEeeCCCCeEEEEEcCCc-ceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCC
Q 040370 158 QAVFNDTEEFVLSIDEPSNEIVIWDALTA-EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRS 220 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 220 (228)
.++......-++.... ..+++.-+... +........+......+..+|....|+.+-.|..
T Consensus 735 ~~~S~qcpeGiv~i~~--n~l~i~~~~~~g~~~n~~~~~l~~tprkvv~h~es~lLii~~td~~ 796 (1205)
T KOG1898|consen 735 PFCSEQCPEGIVAISK--NTLRIIALDKLGKVLNVDGFPLAYTPRKVVIHPESGLLIIGRTDHN 796 (1205)
T ss_pred cccccCCCcchhhhhh--hhhheeeehhhcccccccccccccCcceEEEecCCCeEEEEEeccc
Confidence 1221112222222222 44555544332 3333222355667788888888887777766543
No 485
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=91.33 E-value=5.8 Score=30.99 Aligned_cols=59 Identities=14% Similarity=0.107 Sum_probs=41.5
Q ss_pred CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC
Q 040370 31 GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG 94 (228)
Q Consensus 31 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~ 94 (228)
..++++-+-||.+.+++-+.......+... --.-.+.|.|....|++++.+..+.-|..
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~-----llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPDF-----LLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCCC-----CCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 467888899999999997764432222221 11234678888888999999888888864
No 486
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.11 E-value=3.3 Score=27.83 Aligned_cols=31 Identities=10% Similarity=0.203 Sum_probs=25.2
Q ss_pred ceeEEEEECCCC------CEEEEeeCCCeEEEEEccC
Q 040370 110 AEATSANFTKDQ------RFVLSCGKDSTVKLWEVSS 140 (228)
Q Consensus 110 ~~i~~~~~~~~~------~~l~~~~~d~~i~~wd~~~ 140 (228)
..+..++|+|.| -.|++.+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478899999954 3688889999999998663
No 487
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=90.87 E-value=11 Score=33.41 Aligned_cols=174 Identities=10% Similarity=0.125 Sum_probs=87.8
Q ss_pred eEEEEEcccceEEeeeccceeeeccceeeEEe---C--C--C--CCeEEEEec---------CCeEEEEeCCC-----C-
Q 040370 42 IAHLYDVNTFQCYLSANVPEISVNGAINQVRY---S--S--T--GGMYVTASK---------DGAIRLWDGVS-----A- 97 (228)
Q Consensus 42 ~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~---~--~--~--~~~l~~~~~---------dg~v~iwd~~~-----~- 97 (228)
.|.+.+.++.+.+......+. .-+.+++. . . . ..++++|.. .|.+.|+|+-. +
T Consensus 1005 ~i~LisP~sw~vi~~iefq~~---E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgk 1081 (1366)
T KOG1896|consen 1005 SIQLISPESWEVIDKIEFQEN---EHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGK 1081 (1366)
T ss_pred eeEEecCCccccccccccCcc---ceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCC
Confidence 455555555555444444332 23333333 1 1 1 237777642 48899998632 2
Q ss_pred ----ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEc-cCCeeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370 98 ----NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV-SSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID 172 (228)
Q Consensus 98 ----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
..++.+.....+++|..++ .-+|. |+++ ....|.+|++ +....+..-.. ..+..+ .....-+++++++.
T Consensus 1082 P~t~~KlKel~~eE~KGtVsavc-eV~G~-l~~~-~GqKI~v~~l~r~~~ligVaFi-D~~~yv--~s~~~vknlIl~gD 1155 (1366)
T KOG1896|consen 1082 PFTKNKLKELYIEEQKGTVSAVC-EVRGH-LLSS-QGQKIIVRKLDRDSELIGVAFI-DLPLYV--HSMKVVKNLILAGD 1155 (1366)
T ss_pred CcccceeeeeehhhcccceEEEE-EeccE-EEEc-cCcEEEEEEeccCCcceeeEEe-ccceeE--Eehhhhhhheehhh
Confidence 2334444334466776664 22454 4444 3467999999 44443322111 111122 22222355666654
Q ss_pred CCCCeEEEEEcCCcce-eEEeec-CCCCCcEEEEeCCCCc--EEEEecCCCCEEEee
Q 040370 173 EPSNEIVIWDALTAEK-VAKWSS-NHIGAPRWIEHSPAEA--AFITCGTDRSVRFWK 225 (228)
Q Consensus 173 ~~d~~i~i~d~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~--~l~s~~~dg~i~vwd 225 (228)
-. ..|.+.-...... +..+.. ...-.+.++.|--+|. .++.+..|+.|+++-
T Consensus 1156 V~-ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~ 1211 (1366)
T KOG1896|consen 1156 VM-KSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYM 1211 (1366)
T ss_pred hh-hceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEE
Confidence 43 5555554433222 222211 1223577777766654 577888899988864
No 488
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.27 E-value=5.9 Score=29.25 Aligned_cols=172 Identities=15% Similarity=0.167 Sum_probs=88.9
Q ss_pred CeEEEEEcccceEEeeeccceee--eccceeeEEeCCCC-----CeEE-EEecCCeEEEEeCCCCceeeEEecccc----
Q 040370 41 PIAHLYDVNTFQCYLSANVPEIS--VNGAINQVRYSSTG-----GMYV-TASKDGAIRLWDGVSANCVRSIVGAHG---- 108 (228)
Q Consensus 41 ~~i~vw~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~-----~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~---- 108 (228)
..|.+||+.+++.++.+..+..- ..+.+..+.+.... .++. +=+..+.|.|+|+.+++..+.+.....
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 47899999999987776654321 14567777776521 2333 334456899999998876555432211
Q ss_pred -------------cceeEEEEECC---CCCEEEEeeCCCeEEEEEccC-----Ce---------eEEEEecceeeeeeeE
Q 040370 109 -------------TAEATSANFTK---DQRFVLSCGKDSTVKLWEVSS-----GR---------LVKQYLGATHTQLRFQ 158 (228)
Q Consensus 109 -------------~~~i~~~~~~~---~~~~l~~~~~d~~i~~wd~~~-----~~---------~~~~~~~~~~~~~~~~ 158 (228)
...+..++.+| +++.|+-..-.+ -++|.+.+ .. .+..+ +. .......
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~-k~~~s~g 190 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GD-KGSQSDG 190 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE----SECE
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-cc-cCCCCce
Confidence 12255566655 555555444332 12332221 10 11111 11 1123345
Q ss_pred EEECCCCcEEEEeeCCCCeEEEEEcCCcc---eeEEee-cCC-CCCcEEEEeCC--CCcEEEEec
Q 040370 159 AVFNDTEEFVLSIDEPSNEIVIWDALTAE---KVAKWS-SNH-IGAPRWIEHSP--AEAAFITCG 216 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---~~~~~~-~~~-~~~v~~~~~~~--~~~~l~s~~ 216 (228)
+..+++|...++- -..+.|..|+..+.- ....+. ... -..+.++.+.+ +|.+.+.+.
T Consensus 191 ~~~D~~G~ly~~~-~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 191 MAIDPNGNLYFTD-VEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEEETTTEEEEEE-CCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred EEECCCCcEEEec-CCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 6667766665554 446999999987621 112221 222 45778899998 777666543
No 489
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=89.98 E-value=10 Score=31.51 Aligned_cols=156 Identities=10% Similarity=0.126 Sum_probs=81.0
Q ss_pred ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc--eeeEEecccccceeEEEEECC------CCCEEEEeeC-C---Ce
Q 040370 65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN--CVRSIVGAHGTAEATSANFTK------DQRFVLSCGK-D---ST 132 (228)
Q Consensus 65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~i~~~~~~~------~~~~l~~~~~-d---~~ 132 (228)
...|..+.|.++++.+++...+|.|.+||...+. ....+...+...-+.+ .|-+ ...++++.+. + -.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEE
Confidence 6789999999999999999999999999993332 2122322221111222 2222 2344554444 2 24
Q ss_pred EEEEEcc-CCeeEEEEe---cceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecC----CC-CCcEEE
Q 040370 133 VKLWEVS-SGRLVKQYL---GATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN----HI-GAPRWI 203 (228)
Q Consensus 133 i~~wd~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----~~-~~v~~~ 203 (228)
.+++.+. ....+..+. .......-..+++....-|.+ .++.|.+|++.+.+...++... .. ..+.++
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l----~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl 283 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL----SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSL 283 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE----eCCEEEEEEcCCceEEEEEEechhhccccccceEe
Confidence 6777771 112222221 111111223344442222333 2589999999887766555322 11 233344
Q ss_pred EeCCCCcEEEEecCCCCEEEeeec
Q 040370 204 EHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 204 ~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.--...+.|++. ++.|.+.|+.
T Consensus 284 ~~~s~nRvLLs~--~nkIyLld~~ 305 (670)
T PF10395_consen 284 KPPSPNRVLLSV--NNKIYLLDLK 305 (670)
T ss_pred ecCCCCeEEEEc--CCEEEEEeeh
Confidence 322234445443 5578887753
No 490
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=89.41 E-value=1.2 Score=20.12 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=20.3
Q ss_pred CEEEEeeCCCeEEEEEccCCeeEEE
Q 040370 122 RFVLSCGKDSTVKLWEVSSGRLVKQ 146 (228)
Q Consensus 122 ~~l~~~~~d~~i~~wd~~~~~~~~~ 146 (228)
..++.++.++.+..+|.++|+.+-.
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEE
Confidence 3577888899999999998887654
No 491
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=89.32 E-value=1.5 Score=20.91 Aligned_cols=28 Identities=14% Similarity=0.017 Sum_probs=22.8
Q ss_pred EEEEecCCCeEEEEEcccceEEeeeccc
Q 040370 33 FLLAGTDHPIAHLYDVNTFQCYLSANVP 60 (228)
Q Consensus 33 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~ 60 (228)
.++.++.+|.+.-.|.++|+.+...+..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 4566789999999999999988777653
No 492
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=89.18 E-value=8.6 Score=29.60 Aligned_cols=190 Identities=14% Similarity=0.160 Sum_probs=98.5
Q ss_pred CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe--EEEEec-C---CeEEEEeCCCC-ceeeE
Q 040370 30 SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM--YVTASK-D---GAIRLWDGVSA-NCVRS 102 (228)
Q Consensus 30 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~~~~-d---g~v~iwd~~~~-~~~~~ 102 (228)
...+++....++-+.+||++..+ +..+.......-.-...+.+ .|+. |+.++. + ..|++|.+... ..+..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~-lq~~~~Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKE-LQSLPVGRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-E-EEEE-SS-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCCCcE-EEeecCCCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 45678888888999999998644 34333211110111122233 3332 444443 2 46999977531 22333
Q ss_pred Eecc-----cccceeEEEEE--CC-CCC-EEEEeeCCCeEEEEEcc---CC----eeEEEEecceeeeeeeEEEECCCCc
Q 040370 103 IVGA-----HGTAEATSANF--TK-DQR-FVLSCGKDSTVKLWEVS---SG----RLVKQYLGATHTQLRFQAVFNDTEE 166 (228)
Q Consensus 103 ~~~~-----~~~~~i~~~~~--~~-~~~-~l~~~~~d~~i~~wd~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (228)
+... .....++.+++ ++ ++. +.+....+|.+..|.+. ++ +.++.+.. ...+..+.......
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~sQ~EGCVVDDe~g 220 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GSQPEGCVVDDETG 220 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEETTTT
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CCcceEEEEecccC
Confidence 2211 11234566665 34 444 66677889998888775 22 34666654 23455666777777
Q ss_pred EEEEeeCCCCeEEEEEcCCc-----ceeEEeec-CCCCCcEEEEeC--CCC-cE-EEEecCCCCEEEeee
Q 040370 167 FVLSIDEPSNEIVIWDALTA-----EKVAKWSS-NHIGAPRWIEHS--PAE-AA-FITCGTDRSVRFWKE 226 (228)
Q Consensus 167 ~~~~~~~~d~~i~i~d~~~~-----~~~~~~~~-~~~~~v~~~~~~--~~~-~~-l~s~~~dg~i~vwd~ 226 (228)
.++.+- ++..|.-|+.... ..+..... .....|-.|++- +++ .| |+|.-.+++..||+.
T Consensus 221 ~LYvgE-E~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 221 RLYVGE-EDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp EEEEEE-TTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred CEEEec-CccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence 777754 4678888877522 11211111 233567777764 333 34 445546778999885
No 493
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=89.14 E-value=10 Score=30.41 Aligned_cols=112 Identities=11% Similarity=0.080 Sum_probs=56.6
Q ss_pred CCEEEEecCCC------eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec------CCeEEEEeCCCCc
Q 040370 31 GDFLLAGTDHP------IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK------DGAIRLWDGVSAN 98 (228)
Q Consensus 31 ~~~l~~~~~d~------~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~v~iwd~~~~~ 98 (228)
..+++.|+.+. .+..+|+.+.+........... .......+..-+.+.++.|+. ...+.++|+.+.+
T Consensus 123 ~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P-~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~ 201 (482)
T KOG0379|consen 123 DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPP-PPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETST 201 (482)
T ss_pred CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCC-CCcccceEEEECCEEEEECCccCcccceeeeeeecccccc
Confidence 45566677774 7888888887644333322211 122222222223445555543 3568889988776
Q ss_pred eeeEEecccccc--eeEEEEECCCCCEEEEeeCC-C-----eEEEEEccCCeeE
Q 040370 99 CVRSIVGAHGTA--EATSANFTKDQRFVLSCGKD-S-----TVKLWEVSSGRLV 144 (228)
Q Consensus 99 ~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d-~-----~i~~wd~~~~~~~ 144 (228)
-.+.......+. .-.+++.. .+++++.++.+ + -+.+.|+.+.+..
T Consensus 202 W~~~~~~g~~P~pR~gH~~~~~-~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~ 254 (482)
T KOG0379|consen 202 WSELDTQGEAPSPRYGHAMVVV-GNKLLVFGGGDDGDVYLNDVHILDLSTWEWK 254 (482)
T ss_pred ceecccCCCCCCCCCCceEEEE-CCeEEEEeccccCCceecceEeeecccceee
Confidence 333222211111 11222222 35566666665 2 4777888875544
No 494
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=89.07 E-value=6.8 Score=28.27 Aligned_cols=72 Identities=8% Similarity=0.079 Sum_probs=46.4
Q ss_pred ccceeeEEeCC----C---CCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEE-EECCCCCEEEEeeCCCeEEEE
Q 040370 65 NGAINQVRYSS----T---GGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSA-NFTKDQRFVLSCGKDSTVKLW 136 (228)
Q Consensus 65 ~~~i~~~~~~~----~---~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~d~~i~~w 136 (228)
...|+|++--. + -..++.|.++|.|.|.|.+............-+..+... .|..-.-.++.+++||.|++.
T Consensus 176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 44677776532 1 237999999999999999888877777765222222111 122123457888899988764
No 495
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=88.26 E-value=8.2 Score=28.21 Aligned_cols=197 Identities=12% Similarity=0.062 Sum_probs=114.4
Q ss_pred cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce
Q 040370 20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC 99 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 99 (228)
..-..++-.|||..-+++...+.|--.|..+|+..... ... ...-..|..-|+|..-++-+.. .|.-.|.++.+.
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~yp-Lg~---Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev 136 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYP-LGS---GASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV 136 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEe-cCC---CCCCceEEECCCCCeeEecCcc-eeEEecCcccce
Confidence 44566777788877777777777777788888764433 222 4456778888988866654433 455566655543
Q ss_pred e-eEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeE
Q 040370 100 V-RSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEI 178 (228)
Q Consensus 100 ~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 178 (228)
. ..+...+.........|.+.|++-+++... .---.|... ..+..+... .......++..|+|..-+++-. ++.|
T Consensus 137 t~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa~-~~i~vfpaP-qG~gpyGi~atpdGsvwyasla-gnai 212 (353)
T COG4257 137 TRFPLPLEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPAR-NVISVFPAP-QGGGPYGICATPDGSVWYASLA-GNAI 212 (353)
T ss_pred EEeecccccCCCcccceeeCCCccEEEeeccc-cceecCccc-CceeeeccC-CCCCCcceEECCCCcEEEEecc-ccce
Confidence 2 233334446677888899999988887522 111111111 122333222 2334456777888888777544 4667
Q ss_pred EEEEcCCcceeEEe-ecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 179 VIWDALTAEKVAKW-SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 179 ~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
-..|..++.....- .......-..+.-+|.+..-+|....+.+..+|
T Consensus 213 aridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfd 260 (353)
T COG4257 213 ARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFD 260 (353)
T ss_pred EEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeC
Confidence 77776666322211 122223344555567777777766666666555
No 496
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.07 E-value=10 Score=29.18 Aligned_cols=141 Identities=11% Similarity=0.144 Sum_probs=80.8
Q ss_pred CeEEEEEccc--ceEEeeecc---ceeeeccceeeEEe--CC-CCC-eEEEEecCCeEEEEeCC---CC----ceeeEEe
Q 040370 41 PIAHLYDVNT--FQCYLSANV---PEISVNGAINQVRY--SS-TGG-MYVTASKDGAIRLWDGV---SA----NCVRSIV 104 (228)
Q Consensus 41 ~~i~vw~~~~--~~~~~~~~~---~~~~~~~~i~~~~~--~~-~~~-~l~~~~~dg~v~iwd~~---~~----~~~~~~~ 104 (228)
..|++|.+.. +.. ..... +...-...+..+++ +| +|. +++....+|.+..|.+. .+ +.++++.
T Consensus 127 n~l~~f~id~~~g~L-~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~ 205 (381)
T PF02333_consen 127 NSLRLFRIDPDTGEL-TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK 205 (381)
T ss_dssp -EEEEEEEETTTTEE-EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred CeEEEEEecCCCCcc-eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence 5799998863 332 22211 11110234566665 44 354 66677889988888764 22 3566666
Q ss_pred cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC-----eeEEEEecceeeeee--eEEEECCC-CcEEEEeeCCCC
Q 040370 105 GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG-----RLVKQYLGATHTQLR--FQAVFNDT-EEFVLSIDEPSN 176 (228)
Q Consensus 105 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~d~ 176 (228)
. ...+..+.......+|+.+-++.-|.-|+.+.. +.+....+.....-+ ..+...++ ..|+++++..++
T Consensus 206 ~---~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~ 282 (381)
T PF02333_consen 206 V---GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDN 282 (381)
T ss_dssp ----SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGT
T ss_pred C---CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCC
Confidence 5 457888889988889999999988988887621 222222121111122 22322333 468888888789
Q ss_pred eEEEEEcCC
Q 040370 177 EIVIWDALT 185 (228)
Q Consensus 177 ~i~i~d~~~ 185 (228)
+..+||.+.
T Consensus 283 sf~Vy~r~~ 291 (381)
T PF02333_consen 283 SFAVYDREG 291 (381)
T ss_dssp EEEEEESST
T ss_pred eEEEEecCC
Confidence 999999765
No 497
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=87.77 E-value=2.9 Score=35.16 Aligned_cols=140 Identities=15% Similarity=0.167 Sum_probs=81.4
Q ss_pred EEEEecCCCeEEEEEcccceE-EeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE--------EeCCCCceeeEE
Q 040370 33 FLLAGTDHPIAHLYDVNTFQC-YLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL--------WDGVSANCVRSI 103 (228)
Q Consensus 33 ~l~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i--------wd~~~~~~~~~~ 103 (228)
.+..|++++.+.++.-..+.. .......... ...+.++.+++.. +..|.-||++-. ||.+ +...+
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe-~~~v~~l~~ss~S--lgagl~dgt~a~y~rap~gSwd~e---p~~~~ 622 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPE-HESVKLLLFSSGS--LGAGLIDGTLAVYGRAPSGSWDGE---PNISI 622 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCc-hhhhhhhhccccc--cccCccCCccccccCCCCCCCCCC---Ccccc
Confidence 567788999999998763221 1111111111 5567777776542 445555555544 4433 11222
Q ss_pred ecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce-eeeeeeEEEECCCCcEEEEeeCCCCeEEEEE
Q 040370 104 VGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT-HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWD 182 (228)
Q Consensus 104 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d 182 (228)
.. ...++.+.++..| ++-++.+|.|.++...+.........+. +...++.+.+...+-++..+.+ ..++.++
T Consensus 623 ~~--g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG--~~~rlfh 695 (925)
T KOG3522|consen 623 PT--GSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASG--DEERLFH 695 (925)
T ss_pred cc--CCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCC--CEEEEec
Confidence 22 2557777776544 5677789999999987755544443322 4556777777777777666554 4566555
Q ss_pred cCC
Q 040370 183 ALT 185 (228)
Q Consensus 183 ~~~ 185 (228)
..+
T Consensus 696 tet 698 (925)
T KOG3522|consen 696 TET 698 (925)
T ss_pred ccc
Confidence 444
No 498
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=87.38 E-value=12 Score=29.28 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=24.2
Q ss_pred CCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 198 GAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 198 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
..|.++...+..+.|++...+|.|.+|++.
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence 348889998888999999999999999974
No 499
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.30 E-value=11 Score=28.82 Aligned_cols=112 Identities=17% Similarity=0.076 Sum_probs=67.5
Q ss_pred CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccce
Q 040370 32 DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAE 111 (228)
Q Consensus 32 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 111 (228)
..+.++..+|.|.-.|.++++.+....... . ...+..-.+..+|+ ++.++.+|.+..+|.++++..-...... ...
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~-~-~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~~~ 144 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLG-A-VAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-SPY 144 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcC-c-ceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC-CeE
Confidence 345556778888888988888655443331 0 11122222222565 7888889999999998898887776642 011
Q ss_pred eEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe
Q 040370 112 ATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL 148 (228)
Q Consensus 112 i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 148 (228)
+..-....++ .++.++.++.+.-.|..+++..-...
T Consensus 145 ~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~ 180 (370)
T COG1520 145 YASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYE 180 (370)
T ss_pred EecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEe
Confidence 1111222233 34444467888888888887766544
No 500
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=87.27 E-value=9.6 Score=27.89 Aligned_cols=161 Identities=10% Similarity=0.079 Sum_probs=90.3
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN 98 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 98 (228)
...-..+..-||+..-++-+.. -|.-.|-++.+. ..+..+..+.........|.+.|++-+++.. |.-=-.|.. ..
T Consensus 103 Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev-t~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa-~~ 178 (353)
T COG4257 103 GASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV-TRFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPA-RN 178 (353)
T ss_pred CCCCceEEECCCCCeeEecCcc-eeEEecCcccce-EEeecccccCCCcccceeeCCCccEEEeecc-ccceecCcc-cC
Confidence 3344455556666554443322 344445444443 3344444444677888999999998888863 221111221 12
Q ss_pred eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEeccee-eeeeeEEEECCCCcEEEEeeCCCCe
Q 040370 99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATH-TQLRFQAVFNDTEEFVLSIDEPSNE 177 (228)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~ 177 (228)
.+..+.... ...-+.++..|+|..-++.-.+..|-..|..++. ...+..... ......+..+|.+..-++.-. .+.
T Consensus 179 ~i~vfpaPq-G~gpyGi~atpdGsvwyaslagnaiaridp~~~~-aev~p~P~~~~~gsRriwsdpig~~wittwg-~g~ 255 (353)
T COG4257 179 VISVFPAPQ-GGGPYGICATPDGSVWYASLAGNAIARIDPFAGH-AEVVPQPNALKAGSRRIWSDPIGRAWITTWG-TGS 255 (353)
T ss_pred ceeeeccCC-CCCCcceEECCCCcEEEEeccccceEEcccccCC-cceecCCCcccccccccccCccCcEEEeccC-Cce
Confidence 233333332 4455778899999988887778888888887762 223322211 222333444566666666444 477
Q ss_pred EEEEEcCCc
Q 040370 178 IVIWDALTA 186 (228)
Q Consensus 178 i~i~d~~~~ 186 (228)
+..||..+.
T Consensus 256 l~rfdPs~~ 264 (353)
T COG4257 256 LHRFDPSVT 264 (353)
T ss_pred eeEeCcccc
Confidence 887776544
Done!