Query 040370
Match_columns 228
No_of_seqs 665 out of 1068
Neff 12.0
Searched_HMMs 29240
Date Mon Mar 25 12:20:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040370.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040370hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gqb_B Methylosome protein 50; 100.0 1.1E-44 3.9E-49 267.6 28.4 219 1-227 107-330 (344)
2 4gqb_B Methylosome protein 50; 100.0 3.2E-44 1.1E-48 265.2 27.5 212 12-227 75-288 (344)
3 3ow8_A WD repeat-containing pr 100.0 1.8E-43 6.1E-48 259.2 28.7 215 1-227 106-320 (321)
4 3ow8_A WD repeat-containing pr 100.0 3E-43 1E-47 258.1 29.6 217 1-227 62-278 (321)
5 4g56_B MGC81050 protein; prote 100.0 1.9E-43 6.4E-48 262.7 25.2 219 1-227 119-342 (357)
6 2ynn_A Coatomer subunit beta'; 100.0 3.2E-42 1.1E-46 250.9 29.9 208 11-227 5-216 (304)
7 1got_B GT-beta; complex (GTP-b 100.0 3.7E-42 1.3E-46 254.2 30.2 216 1-225 123-340 (340)
8 2ynn_A Coatomer subunit beta'; 100.0 3.3E-42 1.1E-46 250.9 29.3 216 1-227 39-258 (304)
9 1vyh_C Platelet-activating fac 100.0 5.3E-42 1.8E-46 259.3 28.2 215 1-227 176-410 (410)
10 1vyh_C Platelet-activating fac 100.0 6E-42 2.1E-46 259.0 28.4 215 1-227 134-368 (410)
11 2pbi_B Guanine nucleotide-bind 100.0 2.7E-41 9.4E-46 250.8 30.7 207 11-225 146-354 (354)
12 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.3E-41 8E-46 250.4 30.0 210 10-226 6-223 (345)
13 4ery_A WD repeat-containing pr 100.0 9.8E-41 3.4E-45 243.9 31.4 210 9-227 13-222 (312)
14 1got_B GT-beta; complex (GTP-b 100.0 3.3E-40 1.1E-44 243.8 31.0 207 10-227 46-256 (340)
15 4g56_B MGC81050 protein; prote 100.0 1.5E-41 5.1E-46 252.5 23.0 212 12-227 87-300 (357)
16 3frx_A Guanine nucleotide-bind 100.0 4.1E-40 1.4E-44 241.3 30.2 209 11-227 9-226 (319)
17 2pbi_B Guanine nucleotide-bind 100.0 1.3E-39 4.6E-44 241.8 32.1 208 10-227 55-270 (354)
18 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.7E-40 1.3E-44 244.0 27.9 222 1-227 87-334 (345)
19 3frx_A Guanine nucleotide-bind 100.0 1.9E-39 6.4E-44 237.8 30.6 217 1-227 44-316 (319)
20 2pm7_B Protein transport prote 100.0 1E-39 3.4E-44 237.0 28.0 220 1-227 35-284 (297)
21 2xzm_R RACK1; ribosome, transl 100.0 1.3E-39 4.6E-44 240.8 29.2 210 11-226 13-242 (343)
22 1erj_A Transcriptional repress 100.0 3E-39 1E-43 243.1 30.3 216 1-227 149-388 (393)
23 2hes_X YDR267CP; beta-propelle 100.0 3.1E-39 1E-43 237.7 29.7 208 10-227 5-229 (330)
24 4ery_A WD repeat-containing pr 100.0 5.5E-39 1.9E-43 234.6 30.1 217 1-226 91-310 (312)
25 2hes_X YDR267CP; beta-propelle 100.0 3.6E-39 1.2E-43 237.3 28.9 219 1-226 38-278 (330)
26 2pm7_B Protein transport prote 100.0 2.3E-39 7.8E-44 235.1 27.1 204 14-227 4-237 (297)
27 1erj_A Transcriptional repress 100.0 1.2E-38 4.1E-43 239.8 30.2 208 13-227 58-286 (393)
28 4h5i_A Guanine nucleotide-exch 100.0 8.6E-39 2.9E-43 238.3 28.3 203 18-227 132-342 (365)
29 4gga_A P55CDC, cell division c 100.0 9.7E-39 3.3E-43 242.2 28.3 221 1-227 129-394 (420)
30 3iz6_a 40S ribosomal protein R 100.0 1.3E-39 4.4E-44 244.1 23.1 211 13-227 151-374 (380)
31 3iz6_a 40S ribosomal protein R 100.0 1.2E-39 4.1E-44 244.2 22.2 210 10-227 57-279 (380)
32 1nr0_A Actin interacting prote 100.0 1.2E-38 4.1E-43 252.1 27.1 216 1-227 43-269 (611)
33 4e54_B DNA damage-binding prot 100.0 1.2E-39 4E-44 248.3 20.6 210 13-227 113-326 (435)
34 2ymu_A WD-40 repeat protein; u 100.0 4.3E-38 1.5E-42 247.3 29.3 202 10-225 376-577 (577)
35 3f3f_A Nucleoporin SEH1; struc 100.0 3.2E-38 1.1E-42 232.9 26.9 209 15-227 7-336 (351)
36 4ggc_A P55CDC, cell division c 100.0 8E-38 2.7E-42 228.6 28.2 223 1-227 49-314 (318)
37 1gxr_A ESG1, transducin-like e 100.0 2.6E-37 9E-42 227.4 31.0 215 1-228 123-337 (337)
38 1nr0_A Actin interacting prote 100.0 2.9E-38 9.9E-43 249.8 27.2 218 1-227 85-354 (611)
39 2j04_B YDR362CP, TAU91; beta p 100.0 2.4E-39 8.1E-44 250.4 20.2 221 1-227 187-427 (524)
40 3bg1_A Protein SEC13 homolog; 100.0 7.9E-39 2.7E-43 234.2 21.5 220 1-227 39-292 (316)
41 2xzm_R RACK1; ribosome, transl 100.0 1.9E-37 6.4E-42 229.4 28.9 216 1-227 53-284 (343)
42 3bg1_A Protein SEC13 homolog; 100.0 3.8E-38 1.3E-42 230.6 22.0 206 15-226 9-245 (316)
43 3jrp_A Fusion protein of prote 100.0 3.7E-37 1.3E-41 230.0 27.5 222 1-227 37-286 (379)
44 3jrp_A Fusion protein of prote 100.0 5.1E-37 1.8E-41 229.2 27.4 207 13-227 5-239 (379)
45 1gxr_A ESG1, transducin-like e 100.0 2.5E-36 8.5E-41 222.2 30.5 217 1-227 76-295 (337)
46 2aq5_A Coronin-1A; WD40 repeat 100.0 4.3E-37 1.5E-41 232.0 26.4 225 1-227 61-298 (402)
47 3vl1_A 26S proteasome regulato 100.0 1.2E-37 4E-42 236.1 23.4 201 20-227 98-321 (420)
48 1k8k_C P40, ARP2/3 complex 41 100.0 1E-36 3.6E-41 227.2 27.8 219 1-227 34-273 (372)
49 3zwl_B Eukaryotic translation 100.0 2.3E-36 8E-41 224.8 29.4 212 7-227 20-248 (369)
50 3dm0_A Maltose-binding peripla 100.0 8E-37 2.7E-41 244.9 28.5 217 1-227 456-692 (694)
51 3ei3_B DNA damage-binding prot 100.0 1.2E-36 4.1E-41 228.1 27.1 209 11-227 65-281 (383)
52 3dm0_A Maltose-binding peripla 100.0 1.5E-36 5.2E-41 243.3 29.4 210 13-227 376-591 (694)
53 3vl1_A 26S proteasome regulato 100.0 1.1E-37 3.9E-42 236.2 21.7 217 1-227 123-364 (420)
54 4aow_A Guanine nucleotide-bind 100.0 2.5E-36 8.5E-41 222.6 28.1 210 13-227 32-245 (340)
55 4aow_A Guanine nucleotide-bind 100.0 1.2E-35 4.2E-40 218.9 31.4 220 1-227 65-336 (340)
56 3dwl_C Actin-related protein 2 100.0 2.5E-38 8.5E-43 236.7 16.5 218 1-226 37-279 (377)
57 2xyi_A Probable histone-bindin 100.0 1.2E-36 4.1E-41 231.4 25.9 213 9-227 171-409 (430)
58 3gre_A Serine/threonine-protei 100.0 9.8E-37 3.3E-41 232.2 25.4 216 9-227 52-291 (437)
59 3k26_A Polycomb protein EED; W 100.0 1.2E-37 4.2E-42 231.6 19.9 218 1-227 99-365 (366)
60 2ymu_A WD-40 repeat protein; u 100.0 5.5E-36 1.9E-40 235.3 30.0 209 1-226 329-537 (577)
61 3dwl_C Actin-related protein 2 100.0 9.1E-38 3.1E-42 233.6 18.5 201 17-227 9-235 (377)
62 3zwl_B Eukaryotic translation 100.0 2.3E-35 7.8E-40 219.5 31.2 219 1-227 58-345 (369)
63 3i2n_A WD repeat-containing pr 100.0 6.9E-37 2.4E-41 226.9 22.8 222 1-227 94-352 (357)
64 1r5m_A SIR4-interacting protei 100.0 5.4E-36 1.9E-40 226.7 28.1 212 9-227 139-424 (425)
65 4aez_A CDC20, WD repeat-contai 100.0 6.4E-36 2.2E-40 225.5 28.3 214 1-227 117-335 (401)
66 2pm9_A Protein WEB1, protein t 100.0 3.5E-37 1.2E-41 233.0 21.2 222 1-227 93-336 (416)
67 1sq9_A Antiviral protein SKI8; 100.0 1.6E-36 5.6E-41 228.2 24.2 223 1-227 40-321 (397)
68 1k8k_C P40, ARP2/3 complex 41 100.0 1E-35 3.4E-40 221.9 28.0 204 17-227 6-232 (372)
69 2pm9_A Protein WEB1, protein t 100.0 3.4E-37 1.2E-41 233.1 19.5 222 1-227 49-293 (416)
70 4e54_B DNA damage-binding prot 100.0 5.5E-37 1.9E-41 233.6 20.3 220 1-227 146-429 (435)
71 2oaj_A Protein SNI1; WD40 repe 100.0 9E-36 3.1E-40 243.9 28.1 204 13-227 11-241 (902)
72 4a11_B DNA excision repair pro 100.0 7.7E-36 2.6E-40 224.9 25.3 210 13-227 37-275 (408)
73 3gre_A Serine/threonine-protei 100.0 4.2E-36 1.5E-40 228.7 23.9 224 1-227 90-358 (437)
74 3ei3_B DNA damage-binding prot 100.0 7.6E-36 2.6E-40 223.7 24.5 216 1-227 100-338 (383)
75 3i2n_A WD repeat-containing pr 100.0 5.3E-36 1.8E-40 222.2 23.2 218 1-227 48-290 (357)
76 3k26_A Polycomb protein EED; W 100.0 1.8E-36 6E-41 225.4 20.5 219 1-227 48-317 (366)
77 3mkq_A Coatomer beta'-subunit; 100.0 4.6E-35 1.6E-39 238.3 29.5 208 11-227 5-216 (814)
78 1sq9_A Antiviral protein SKI8; 100.0 2.1E-35 7.1E-40 222.1 25.4 225 1-227 95-394 (397)
79 2j04_B YDR362CP, TAU91; beta p 100.0 1.9E-36 6.4E-41 234.2 20.1 208 13-228 260-517 (524)
80 4aez_A CDC20, WD repeat-contai 100.0 7.2E-35 2.4E-39 219.8 28.0 214 1-227 160-379 (401)
81 3jro_A Fusion protein of prote 100.0 1.1E-35 3.8E-40 239.9 24.2 222 1-227 35-284 (753)
82 3mkq_A Coatomer beta'-subunit; 100.0 4E-35 1.4E-39 238.6 27.4 216 1-227 39-258 (814)
83 1r5m_A SIR4-interacting protei 100.0 1.1E-34 3.9E-39 219.5 28.1 212 10-227 36-318 (425)
84 3jro_A Fusion protein of prote 100.0 3.6E-35 1.2E-39 236.9 25.8 206 14-227 4-237 (753)
85 4a11_B DNA excision repair pro 100.0 3.5E-34 1.2E-38 215.8 29.3 218 1-227 70-364 (408)
86 2w18_A PALB2, fancn, partner a 100.0 5.2E-35 1.8E-39 210.6 23.2 199 21-227 113-356 (356)
87 2aq5_A Coronin-1A; WD40 repeat 100.0 2.1E-35 7.3E-40 222.7 22.3 223 1-227 108-341 (402)
88 2xyi_A Probable histone-bindin 100.0 6.6E-35 2.2E-39 221.9 24.8 207 12-227 121-352 (430)
89 3dw8_B Serine/threonine-protei 100.0 6.6E-35 2.2E-39 222.6 23.7 212 12-227 74-372 (447)
90 3mmy_A MRNA export factor; mRN 100.0 1.6E-34 5.4E-39 214.9 24.8 218 1-225 68-343 (368)
91 3dw8_B Serine/threonine-protei 100.0 2E-34 6.9E-39 219.9 26.0 202 17-227 26-314 (447)
92 4gq1_A NUP37; propeller, trans 100.0 2.9E-35 1E-39 221.3 21.0 220 1-226 115-387 (393)
93 3v7d_B Cell division control p 100.0 4.8E-34 1.6E-38 219.0 27.6 210 1-227 146-380 (464)
94 3mmy_A MRNA export factor; mRN 100.0 5.1E-34 1.8E-38 212.1 26.4 210 11-227 31-303 (368)
95 3sfz_A APAF-1, apoptotic pepti 100.0 6.9E-34 2.4E-38 240.4 30.5 216 1-226 641-911 (1249)
96 1yfq_A Cell cycle arrest prote 100.0 1.5E-34 5.2E-39 213.3 21.6 216 1-227 37-281 (342)
97 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-33 6.2E-38 237.8 30.9 208 11-227 607-870 (1249)
98 1pgu_A Actin interacting prote 100.0 1.2E-33 4.1E-38 223.3 27.6 215 1-227 43-282 (615)
99 3vu4_A KMHSV2; beta-propeller 100.0 1E-33 3.5E-38 210.2 25.6 201 14-227 14-270 (355)
100 3lrv_A PRE-mRNA-splicing facto 100.0 1.9E-34 6.5E-39 213.3 20.9 215 1-226 62-290 (343)
101 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.5E-34 2.2E-38 217.6 23.7 204 19-227 4-270 (450)
102 3odt_A Protein DOA1; ubiquitin 100.0 6.7E-33 2.3E-37 202.0 27.3 208 2-227 86-295 (313)
103 2j04_A TAU60, YPL007P, hypothe 100.0 8.3E-34 2.8E-38 216.4 22.5 212 2-226 69-295 (588)
104 3odt_A Protein DOA1; ubiquitin 100.0 4.2E-33 1.4E-37 203.1 25.2 211 1-227 43-254 (313)
105 3v7d_B Cell division control p 100.0 9.6E-33 3.3E-37 211.7 27.9 202 11-227 113-340 (464)
106 1p22_A F-BOX/WD-repeat protein 100.0 1.5E-32 5E-37 209.2 27.9 204 1-226 157-363 (435)
107 1yfq_A Cell cycle arrest prote 100.0 1.1E-33 3.8E-38 208.7 20.8 202 17-227 9-224 (342)
108 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.5E-32 8.5E-37 208.8 27.8 222 1-227 129-390 (450)
109 3lrv_A PRE-mRNA-splicing facto 100.0 3.8E-33 1.3E-37 206.3 21.8 198 17-224 123-329 (343)
110 1p22_A F-BOX/WD-repeat protein 100.0 6.2E-33 2.1E-37 211.3 23.4 208 1-227 197-413 (435)
111 1pgu_A Actin interacting prote 100.0 7.7E-33 2.6E-37 218.7 23.5 199 17-227 16-237 (615)
112 4h5i_A Guanine nucleotide-exch 100.0 1.2E-31 4.1E-36 199.8 24.7 157 67-227 135-299 (365)
113 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.8E-31 2.3E-35 200.6 28.7 210 1-227 223-441 (445)
114 2j04_A TAU60, YPL007P, hypothe 100.0 1.2E-32 4.2E-37 210.1 18.6 197 18-226 14-252 (588)
115 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.9E-31 2.4E-35 200.5 28.5 205 1-227 143-347 (445)
116 1l0q_A Surface layer protein; 100.0 2.4E-30 8.1E-35 194.3 30.2 211 1-227 16-232 (391)
117 2oaj_A Protein SNI1; WD40 repe 100.0 6.9E-31 2.4E-35 215.1 26.1 215 1-226 43-310 (902)
118 1l0q_A Surface layer protein; 100.0 1.6E-29 5.4E-34 189.9 31.1 211 1-227 58-274 (391)
119 3vu4_A KMHSV2; beta-propeller 100.0 6.5E-30 2.2E-34 189.8 27.3 200 20-227 59-335 (355)
120 4ggc_A P55CDC, cell division c 100.0 6.4E-30 2.2E-34 186.7 26.3 201 21-227 27-272 (318)
121 4gq1_A NUP37; propeller, trans 100.0 1.2E-31 4.1E-36 201.7 17.4 194 29-227 99-347 (393)
122 4gga_A P55CDC, cell division c 100.0 4.2E-30 1.5E-34 194.9 25.9 199 21-227 107-352 (420)
123 3bws_A Protein LP49; two-domai 100.0 8.1E-30 2.8E-34 193.8 26.6 198 17-226 167-388 (433)
124 3bws_A Protein LP49; two-domai 100.0 8.4E-29 2.9E-33 188.2 30.3 212 1-227 195-431 (433)
125 3f3f_A Nucleoporin SEH1; struc 100.0 3.5E-29 1.2E-33 184.5 23.6 185 1-192 37-344 (351)
126 2hqs_A Protein TOLB; TOLB, PAL 100.0 8.6E-28 3E-32 181.8 27.6 209 1-226 163-385 (415)
127 2w18_A PALB2, fancn, partner a 100.0 6.2E-29 2.1E-33 179.2 19.7 167 10-183 169-355 (356)
128 2oit_A Nucleoporin 214KDA; NH2 100.0 7.6E-27 2.6E-31 177.4 21.7 204 19-227 36-277 (434)
129 2ojh_A Uncharacterized protein 100.0 3.7E-26 1.3E-30 164.8 22.0 211 2-226 27-256 (297)
130 1ri6_A Putative isomerase YBHE 100.0 1.6E-25 5.4E-30 165.0 25.6 220 1-227 19-261 (343)
131 2hqs_A Protein TOLB; TOLB, PAL 100.0 2.2E-26 7.6E-31 174.1 19.9 214 1-227 97-343 (415)
132 2oit_A Nucleoporin 214KDA; NH2 100.0 4.8E-26 1.7E-30 172.9 21.7 167 16-186 89-279 (434)
133 1ri6_A Putative isomerase YBHE 99.9 1.5E-24 5E-29 159.8 27.2 203 19-226 83-306 (343)
134 3hfq_A Uncharacterized protein 99.9 2.2E-24 7.5E-29 159.5 27.9 223 2-226 68-315 (347)
135 1nir_A Nitrite reductase; hemo 99.9 1.7E-24 5.8E-29 168.6 24.8 194 26-227 144-354 (543)
136 1nir_A Nitrite reductase; hemo 99.9 6.5E-24 2.2E-28 165.3 27.7 197 21-226 180-400 (543)
137 3u4y_A Uncharacterized protein 99.9 3.2E-24 1.1E-28 157.5 24.6 215 1-227 24-251 (331)
138 1pby_B Quinohemoprotein amine 99.9 5.9E-24 2E-28 156.2 24.5 197 21-227 35-309 (337)
139 3vgz_A Uncharacterized protein 99.9 1.7E-23 5.9E-28 154.8 25.9 206 17-227 86-302 (353)
140 3u4y_A Uncharacterized protein 99.9 1.1E-23 3.7E-28 154.7 24.1 217 2-227 67-303 (331)
141 3hfq_A Uncharacterized protein 99.9 4E-23 1.4E-27 152.7 25.6 209 14-227 34-270 (347)
142 3vgz_A Uncharacterized protein 99.9 1.7E-22 5.7E-27 149.5 27.4 187 22-218 143-334 (353)
143 2ecf_A Dipeptidyl peptidase IV 99.9 1.1E-24 3.7E-29 175.9 16.8 199 21-227 110-366 (741)
144 1jmx_B Amine dehydrogenase; ox 99.9 1.7E-23 5.8E-28 154.5 21.6 196 21-227 44-324 (349)
145 1xfd_A DIP, dipeptidyl aminope 99.9 1.3E-23 4.3E-28 169.3 21.0 220 1-225 41-341 (723)
146 2z3z_A Dipeptidyl aminopeptida 99.9 2.9E-23 9.9E-28 166.8 21.6 219 1-225 105-386 (706)
147 2z3z_A Dipeptidyl aminopeptida 99.9 1.6E-23 5.3E-28 168.4 19.0 199 20-227 82-341 (706)
148 2ecf_A Dipeptidyl peptidase IV 99.9 1.6E-22 5.5E-27 163.3 22.1 221 1-227 133-412 (741)
149 2ojh_A Uncharacterized protein 99.9 1.2E-22 4.1E-27 146.4 18.8 191 19-219 84-293 (297)
150 1xfd_A DIP, dipeptidyl aminope 99.9 4.4E-23 1.5E-27 166.1 17.4 207 18-227 112-392 (723)
151 3scy_A Hypothetical bacterial 99.9 1.5E-20 5.1E-25 139.7 28.5 205 17-226 97-335 (361)
152 3scy_A Hypothetical bacterial 99.9 8.1E-21 2.8E-25 141.2 25.8 204 18-226 48-289 (361)
153 1jof_A Carboxy-CIS,CIS-muconat 99.9 5.6E-21 1.9E-25 142.3 24.6 204 19-226 39-289 (365)
154 1jof_A Carboxy-CIS,CIS-muconat 99.9 2.3E-21 8E-26 144.4 21.5 206 21-226 84-339 (365)
155 1jmx_B Amine dehydrogenase; ox 99.9 1.1E-21 3.7E-26 144.8 19.6 162 24-192 4-182 (349)
156 1k32_A Tricorn protease; prote 99.9 8.3E-22 2.8E-26 164.4 20.4 195 18-226 294-500 (1045)
157 1k32_A Tricorn protease; prote 99.9 5E-21 1.7E-25 159.8 22.7 201 14-227 373-636 (1045)
158 1z68_A Fibroblast activation p 99.9 3.9E-22 1.3E-26 160.6 15.4 197 21-224 61-340 (719)
159 1pby_B Quinohemoprotein amine 99.9 1.9E-20 6.6E-25 137.4 22.8 152 32-192 2-170 (337)
160 3o4h_A Acylamino-acid-releasin 99.9 7E-21 2.4E-25 149.9 21.7 191 19-226 21-225 (582)
161 1z68_A Fibroblast activation p 99.9 7.1E-22 2.4E-26 159.1 12.8 195 24-225 20-284 (719)
162 3o4h_A Acylamino-acid-releasin 99.9 2.7E-21 9.3E-26 152.3 15.2 197 12-226 56-274 (582)
163 3pe7_A Oligogalacturonate lyas 99.9 3.8E-19 1.3E-23 133.2 21.9 207 10-226 21-271 (388)
164 1q7f_A NHL, brain tumor CG1071 99.8 4.5E-18 1.6E-22 122.4 26.0 200 19-227 76-279 (286)
165 4a5s_A Dipeptidyl peptidase 4 99.8 5.6E-20 1.9E-24 148.6 17.4 200 20-226 17-292 (740)
166 3fvz_A Peptidyl-glycine alpha- 99.8 7E-18 2.4E-22 123.9 26.7 206 19-226 90-320 (329)
167 4a5s_A Dipeptidyl peptidase 4 99.8 2.7E-19 9.2E-24 144.6 17.2 197 23-226 65-351 (740)
168 1q7f_A NHL, brain tumor CG1071 99.8 3.1E-17 1.1E-21 118.0 25.2 202 19-226 29-236 (286)
169 2dg1_A DRP35, lactonase; beta 99.8 1.1E-16 3.8E-21 117.5 28.5 205 14-226 39-261 (333)
170 3azo_A Aminopeptidase; POP fam 99.8 9.6E-19 3.3E-23 139.7 18.0 207 13-226 61-321 (662)
171 2oiz_A Aromatic amine dehydrog 99.8 3E-17 1E-21 121.9 24.5 196 24-227 54-333 (361)
172 3fvz_A Peptidyl-glycine alpha- 99.8 4E-17 1.4E-21 119.8 24.5 203 19-226 23-275 (329)
173 3e5z_A Putative gluconolactona 99.8 7E-17 2.4E-21 116.8 24.6 193 15-219 64-278 (296)
174 2gop_A Trilobed protease; beta 99.8 1.9E-17 6.4E-22 122.3 21.4 184 20-226 59-289 (347)
175 3azo_A Aminopeptidase; POP fam 99.8 7.6E-18 2.6E-22 134.5 19.0 200 18-226 128-365 (662)
176 3e5z_A Putative gluconolactona 99.8 2.1E-16 7.3E-21 114.2 25.0 200 13-226 21-244 (296)
177 2xdw_A Prolyl endopeptidase; a 99.8 9.1E-17 3.1E-21 129.3 24.1 197 20-224 125-362 (710)
178 2bkl_A Prolyl endopeptidase; m 99.8 4.4E-17 1.5E-21 130.9 21.4 200 18-227 119-348 (695)
179 3dsm_A Uncharacterized protein 99.8 1.8E-16 6E-21 116.4 22.9 202 17-226 81-300 (328)
180 3c5m_A Oligogalacturonate lyas 99.8 2.8E-18 9.4E-23 128.7 13.3 195 22-226 38-271 (396)
181 3pe7_A Oligogalacturonate lyas 99.8 2.6E-17 9.1E-22 123.2 18.1 201 18-226 79-327 (388)
182 3no2_A Uncharacterized protein 99.8 5.5E-16 1.9E-20 110.9 22.7 185 30-226 4-193 (276)
183 1qks_A Cytochrome CD1 nitrite 99.8 1.6E-15 5.3E-20 118.4 26.8 190 29-226 165-371 (567)
184 1rwi_B Serine/threonine-protei 99.8 2.8E-16 9.4E-21 112.0 19.2 197 20-227 67-263 (270)
185 1qks_A Cytochrome CD1 nitrite 99.7 1.7E-14 5.8E-19 112.7 28.9 205 15-226 192-419 (567)
186 1xip_A Nucleoporin NUP159; bet 99.7 4.9E-16 1.7E-20 115.2 19.1 177 20-214 38-230 (388)
187 3dsm_A Uncharacterized protein 99.7 5.4E-15 1.8E-19 108.5 24.3 193 21-226 45-251 (328)
188 2dg1_A DRP35, lactonase; beta 99.7 3.5E-16 1.2E-20 114.9 17.7 197 19-226 5-211 (333)
189 2oiz_A Aromatic amine dehydrog 99.7 6.1E-15 2.1E-19 109.5 24.1 178 20-210 108-360 (361)
190 3c5m_A Oligogalacturonate lyas 99.7 9E-17 3.1E-21 120.5 13.7 191 24-226 85-327 (396)
191 1rwi_B Serine/threonine-protei 99.7 6E-15 2E-19 105.1 21.6 195 21-226 25-220 (270)
192 3no2_A Uncharacterized protein 99.7 2E-14 7E-19 102.7 24.0 195 9-215 25-230 (276)
193 1yr2_A Prolyl oligopeptidase; 99.7 7.1E-15 2.4E-19 118.9 23.3 197 20-226 163-391 (741)
194 2xdw_A Prolyl endopeptidase; a 99.7 4.2E-15 1.4E-19 119.7 21.8 199 21-226 172-412 (710)
195 2gop_A Trilobed protease; beta 99.7 6.2E-15 2.1E-19 108.7 21.0 187 14-226 99-329 (347)
196 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 1.5E-13 5.3E-18 99.8 28.0 201 18-226 69-297 (314)
197 2z2n_A Virginiamycin B lyase; 99.7 2.6E-13 8.9E-18 97.8 27.8 199 18-226 55-253 (299)
198 2z2n_A Virginiamycin B lyase; 99.7 2.3E-13 8E-18 98.1 27.4 200 17-226 12-211 (299)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 1.6E-13 5.4E-18 99.8 24.5 204 16-226 14-254 (314)
200 3hrp_A Uncharacterized protein 99.7 1.8E-13 6.1E-18 103.2 24.2 196 20-225 131-351 (409)
201 3g4e_A Regucalcin; six bladed 99.7 8.6E-13 2.9E-17 95.4 26.2 192 16-215 50-259 (297)
202 2mad_H Methylamine dehydrogena 99.6 1E-12 3.6E-17 97.8 26.9 198 24-227 70-349 (373)
203 2qc5_A Streptogramin B lactona 99.6 2.3E-12 7.7E-17 92.9 27.6 200 17-226 17-216 (300)
204 2qc5_A Streptogramin B lactona 99.6 2.4E-12 8.2E-17 92.8 27.5 198 19-226 61-258 (300)
205 2bkl_A Prolyl endopeptidase; m 99.6 1.1E-14 3.7E-19 117.0 16.3 196 23-226 171-395 (695)
206 3g4e_A Regucalcin; six bladed 99.6 3.3E-12 1.1E-16 92.3 26.0 197 19-226 12-227 (297)
207 2ghs_A AGR_C_1268P; regucalcin 99.6 5.2E-12 1.8E-16 92.5 26.6 192 21-226 50-258 (326)
208 2ghs_A AGR_C_1268P; regucalcin 99.6 7.7E-12 2.6E-16 91.6 26.3 192 17-218 87-293 (326)
209 3iuj_A Prolyl endopeptidase; h 99.6 2.1E-13 7.1E-18 109.6 19.4 197 18-226 127-357 (693)
210 3dr2_A Exported gluconolactona 99.6 6.5E-12 2.2E-16 91.1 25.0 196 15-222 81-301 (305)
211 2ece_A 462AA long hypothetical 99.6 5.9E-12 2E-16 94.1 23.9 194 21-216 139-399 (462)
212 3hrp_A Uncharacterized protein 99.6 8.1E-12 2.8E-16 94.2 24.6 197 25-226 176-408 (409)
213 1yr2_A Prolyl oligopeptidase; 99.6 4.1E-13 1.4E-17 108.7 18.6 196 22-226 211-439 (741)
214 2iwa_A Glutamine cyclotransfer 99.6 1.6E-11 5.5E-16 86.3 23.9 205 11-226 10-235 (266)
215 1xip_A Nucleoporin NUP159; bet 99.5 1.2E-12 4E-17 97.2 17.9 140 16-173 85-233 (388)
216 3dr2_A Exported gluconolactona 99.5 2.9E-11 1E-15 87.7 25.1 202 12-226 37-265 (305)
217 3c75_H MADH, methylamine dehyd 99.5 4.4E-12 1.5E-16 95.3 20.4 202 24-227 122-401 (426)
218 3sjl_D Methylamine dehydrogena 99.5 7.8E-12 2.7E-16 92.5 20.5 201 24-227 82-362 (386)
219 2qe8_A Uncharacterized protein 99.5 5.3E-12 1.8E-16 93.1 18.9 201 18-219 65-312 (343)
220 2ece_A 462AA long hypothetical 99.5 5E-11 1.7E-15 89.2 23.2 197 29-226 93-350 (462)
221 2hz6_A Endoplasmic reticulum t 99.5 7.2E-15 2.5E-19 109.4 2.4 179 30-226 8-190 (369)
222 3nol_A Glutamine cyclotransfer 99.5 1.6E-10 5.4E-15 80.5 23.4 193 12-217 33-244 (262)
223 2mad_H Methylamine dehydrogena 99.5 1.1E-10 3.7E-15 87.0 23.8 187 26-226 27-241 (373)
224 2qe8_A Uncharacterized protein 99.5 5.3E-11 1.8E-15 87.8 22.0 205 20-226 17-276 (343)
225 1fwx_A Nitrous oxide reductase 99.4 4.1E-11 1.4E-15 92.5 20.8 186 30-226 100-359 (595)
226 3sjl_D Methylamine dehydrogena 99.4 4.5E-11 1.5E-15 88.5 20.2 188 25-226 38-254 (386)
227 1mda_H Methylamine dehydrogena 99.4 1.9E-11 6.6E-16 90.4 17.3 198 24-227 69-345 (368)
228 3c75_H MADH, methylamine dehyd 99.4 4E-11 1.4E-15 90.2 18.5 186 29-226 82-293 (426)
229 3mbr_X Glutamine cyclotransfer 99.4 8.4E-10 2.9E-14 76.3 23.0 194 11-216 10-222 (243)
230 3nok_A Glutaminyl cyclase; bet 99.4 1.4E-09 4.7E-14 75.9 23.7 190 12-216 45-253 (268)
231 1fwx_A Nitrous oxide reductase 99.4 4.3E-11 1.5E-15 92.4 17.1 185 19-216 133-406 (595)
232 3iuj_A Prolyl endopeptidase; h 99.3 1E-10 3.5E-15 94.1 17.8 194 23-226 178-403 (693)
233 1kb0_A Quinohemoprotein alcoho 99.3 6.8E-10 2.3E-14 88.9 20.0 188 23-214 246-536 (677)
234 2hz6_A Endoplasmic reticulum t 99.3 1.9E-12 6.4E-17 96.4 4.2 174 20-210 38-216 (369)
235 2p4o_A Hypothetical protein; p 99.3 3.9E-08 1.3E-12 71.3 26.3 197 19-226 31-240 (306)
236 1npe_A Nidogen, entactin; glyc 99.3 5E-08 1.7E-12 69.2 25.9 196 20-226 36-236 (267)
237 1yiq_A Quinohemoprotein alcoho 99.3 1.6E-09 5.6E-14 86.9 20.1 186 24-213 239-533 (689)
238 1yiq_A Quinohemoprotein alcoho 99.2 2.1E-09 7E-14 86.3 19.1 186 40-227 182-504 (689)
239 1kb0_A Quinohemoprotein alcoho 99.2 2.8E-09 9.7E-14 85.4 19.7 195 31-227 174-506 (677)
240 2fp8_A Strictosidine synthase; 99.2 2.9E-08 9.9E-13 72.4 22.8 191 20-217 19-248 (322)
241 3hxj_A Pyrrolo-quinoline quino 99.2 7.9E-09 2.7E-13 75.4 18.2 188 18-226 135-322 (330)
242 3qqz_A Putative uncharacterize 99.2 2.8E-07 9.5E-12 64.5 25.0 203 17-225 24-250 (255)
243 2fp8_A Strictosidine synthase; 99.1 1.1E-07 3.6E-12 69.5 23.0 197 21-226 81-311 (322)
244 2xe4_A Oligopeptidase B; hydro 99.1 1.4E-08 5E-13 82.3 20.1 194 21-224 175-394 (751)
245 2iwa_A Glutamine cyclotransfer 99.1 5.9E-08 2E-12 68.3 19.1 154 24-186 70-238 (266)
246 1npe_A Nidogen, entactin; glyc 99.1 3.7E-07 1.3E-11 64.7 23.6 180 20-210 79-263 (267)
247 3hxj_A Pyrrolo-quinoline quino 99.0 6.8E-08 2.3E-12 70.5 18.2 175 31-225 107-281 (330)
248 3v65_B Low-density lipoprotein 99.0 2.1E-06 7.3E-11 64.2 26.4 198 18-225 114-315 (386)
249 3q7m_A Lipoprotein YFGL, BAMB; 99.0 4.2E-07 1.4E-11 67.7 22.5 188 30-226 52-256 (376)
250 3q7m_A Lipoprotein YFGL, BAMB; 99.0 2.1E-07 7.1E-12 69.3 20.8 183 31-226 188-376 (376)
251 1kv9_A Type II quinohemoprotei 99.0 1.6E-07 5.4E-12 75.3 20.8 186 40-227 177-487 (668)
252 1mda_H Methylamine dehydrogena 99.0 8.9E-09 3.1E-13 76.2 11.7 129 42-185 47-194 (368)
253 3v64_C Agrin; beta propeller, 99.0 3.5E-06 1.2E-10 62.2 26.9 197 19-225 72-272 (349)
254 1k3i_A Galactose oxidase precu 98.9 7.9E-07 2.7E-11 71.2 22.1 118 24-143 190-326 (656)
255 4hw6_A Hypothetical protein, I 98.9 1.7E-06 5.9E-11 65.7 22.7 197 21-225 140-371 (433)
256 3nol_A Glutamine cyclotransfer 98.9 8.1E-07 2.8E-11 62.0 18.1 150 66-226 43-199 (262)
257 1kv9_A Type II quinohemoprotei 98.9 3.9E-07 1.3E-11 73.0 18.9 189 24-216 234-520 (668)
258 3amr_A 3-phytase; beta-propell 98.9 2.9E-06 1E-10 61.8 20.7 185 30-226 39-261 (355)
259 3nok_A Glutaminyl cyclase; bet 98.8 3.1E-06 1E-10 59.2 19.8 136 30-173 104-254 (268)
260 3tc9_A Hypothetical hydrolase; 98.8 7.5E-06 2.6E-10 62.2 22.9 154 21-184 138-300 (430)
261 2ad6_A Methanol dehydrogenase 98.8 1.6E-06 5.6E-11 68.2 19.4 186 24-214 239-523 (571)
262 3tc9_A Hypothetical hydrolase; 98.8 2.1E-06 7.2E-11 65.2 19.3 153 67-226 138-299 (430)
263 1flg_A Protein (quinoprotein e 98.8 2.5E-06 8.4E-11 67.3 20.1 185 24-213 250-544 (582)
264 2p9w_A MAL S 1 allergenic prot 98.8 6.7E-06 2.3E-10 59.4 20.5 172 12-186 5-216 (334)
265 2ad6_A Methanol dehydrogenase 98.8 2E-06 6.9E-11 67.6 19.5 192 32-226 161-492 (571)
266 3v64_C Agrin; beta propeller, 98.8 1.5E-05 5.1E-10 58.8 22.4 195 20-226 34-232 (349)
267 1ijq_A LDL receptor, low-densi 98.8 1.9E-05 6.4E-10 57.5 28.6 202 16-226 26-236 (316)
268 3p5b_L Low density lipoprotein 98.7 2.7E-05 9.1E-10 58.6 28.8 200 17-225 109-317 (400)
269 3kya_A Putative phosphatase; s 98.7 1.1E-05 3.9E-10 61.8 21.7 160 21-184 140-340 (496)
270 3mbr_X Glutamine cyclotransfer 98.7 7.8E-06 2.7E-10 56.6 18.8 152 65-226 20-177 (243)
271 3sov_A LRP-6, low-density lipo 98.7 2.6E-05 9E-10 56.7 25.1 198 20-226 35-236 (318)
272 1w6s_A Methanol dehydrogenase 98.7 7.4E-06 2.5E-10 64.7 19.9 183 24-211 245-529 (599)
273 1flg_A Protein (quinoprotein e 98.7 1.1E-05 3.7E-10 63.7 20.4 137 87-226 291-514 (582)
274 3amr_A 3-phytase; beta-propell 98.7 2.9E-05 9.9E-10 56.6 20.8 169 20-192 68-271 (355)
275 2xe4_A Oligopeptidase B; hydro 98.7 2.1E-06 7.2E-11 69.8 16.6 154 67-225 175-349 (751)
276 1k3i_A Galactose oxidase precu 98.6 9E-06 3.1E-10 65.2 19.7 213 2-217 224-530 (656)
277 4a2l_A BT_4663, two-component 98.6 5.2E-05 1.8E-09 62.2 24.5 197 19-226 356-569 (795)
278 4hw6_A Hypothetical protein, I 98.6 6.6E-05 2.3E-09 57.1 23.4 204 17-226 179-431 (433)
279 4a2l_A BT_4663, two-component 98.6 0.0001 3.6E-09 60.4 25.9 195 19-225 405-611 (795)
280 2p4o_A Hypothetical protein; p 98.6 4.9E-05 1.7E-09 54.9 23.7 189 17-216 69-276 (306)
281 1ijq_A LDL receptor, low-densi 98.6 5.6E-05 1.9E-09 54.9 23.6 184 33-226 3-193 (316)
282 3v65_B Low-density lipoprotein 98.6 2.4E-05 8.1E-10 58.6 19.9 191 24-226 81-275 (386)
283 3m0c_C LDL receptor, low-densi 98.5 0.00021 7.1E-09 58.4 27.8 200 17-225 421-629 (791)
284 3qqz_A Putative uncharacterize 98.5 5.8E-05 2E-09 52.9 18.9 160 65-226 26-202 (255)
285 3v9f_A Two-component system se 98.5 0.00012 4E-09 60.0 23.1 197 20-226 363-566 (781)
286 2p9w_A MAL S 1 allergenic prot 98.5 9.2E-05 3.1E-09 53.6 19.0 158 67-226 14-213 (334)
287 1n7d_A LDL receptor, low-densi 98.5 3.3E-06 1.1E-10 68.0 12.7 197 20-226 406-612 (699)
288 3sov_A LRP-6, low-density lipo 98.5 8.8E-05 3E-09 54.0 19.2 180 40-226 12-195 (318)
289 3p5b_L Low density lipoprotein 98.5 0.00019 6.6E-09 53.9 22.8 184 33-226 85-275 (400)
290 1w6s_A Methanol dehydrogenase 98.4 5.3E-05 1.8E-09 59.9 18.6 193 31-226 62-340 (599)
291 3kya_A Putative phosphatase; s 98.4 0.00018 6E-09 55.3 19.6 156 68-226 141-339 (496)
292 3v9f_A Two-component system se 98.4 0.00043 1.5E-08 56.7 23.1 200 19-225 312-521 (781)
293 3s94_A LRP-6, low-density lipo 98.3 0.00049 1.7E-08 54.8 22.4 199 18-226 38-241 (619)
294 2xbg_A YCF48-like protein; pho 98.3 0.00044 1.5E-08 50.5 23.0 193 20-225 122-319 (327)
295 3m0c_C LDL receptor, low-densi 98.3 0.00071 2.4E-08 55.3 22.3 176 41-226 404-587 (791)
296 4a0p_A LRP6, LRP-6, low-densit 98.2 0.001 3.5E-08 53.0 25.8 194 20-225 37-234 (628)
297 3sre_A PON1, serum paraoxonase 98.2 0.00087 3E-08 49.4 21.8 190 20-218 50-287 (355)
298 2vpj_A Kelch-like protein 12; 98.1 0.00085 2.9E-08 48.2 19.2 187 30-226 62-276 (301)
299 2xbg_A YCF48-like protein; pho 98.1 0.0011 3.7E-08 48.4 22.2 191 19-221 79-272 (327)
300 1n7d_A LDL receptor, low-densi 98.1 2.4E-05 8.1E-10 63.1 10.1 177 40-226 385-569 (699)
301 3ii7_A Kelch-like protein 7; p 98.1 0.0012 4.1E-08 47.5 19.8 187 30-226 55-270 (306)
302 2xn4_A Kelch-like protein 2; s 97.9 0.0023 8E-08 45.9 20.1 187 30-226 61-274 (302)
303 3ei3_A DNA damage-binding prot 97.9 0.0085 2.9E-07 51.2 22.9 174 42-226 808-997 (1158)
304 4asc_A Kelch repeat and BTB do 97.8 0.0034 1.2E-07 45.4 15.9 181 28-218 43-253 (315)
305 4a0p_A LRP6, LRP-6, low-densit 97.8 0.0094 3.2E-07 47.6 26.1 200 20-225 340-546 (628)
306 3pbp_A Nucleoporin NUP82; beta 97.8 0.0019 6.5E-08 48.4 14.2 115 21-136 67-208 (452)
307 2ism_A Putative oxidoreductase 97.7 0.0063 2.2E-07 44.9 22.7 106 19-128 30-153 (352)
308 1zgk_A Kelch-like ECH-associat 97.7 0.0055 1.9E-07 44.1 17.9 187 30-226 70-285 (308)
309 3s94_A LRP-6, low-density lipo 97.7 0.011 3.9E-07 47.1 25.9 194 20-223 349-546 (619)
310 3sre_A PON1, serum paraoxonase 97.6 0.0097 3.3E-07 43.9 16.8 145 20-172 112-285 (355)
311 2xn4_A Kelch-like protein 2; s 97.6 0.0095 3.2E-07 42.7 16.0 150 30-187 108-278 (302)
312 2vpj_A Kelch-like protein 12; 97.6 0.0094 3.2E-07 42.7 19.9 187 30-226 14-229 (301)
313 3a9g_A Putative uncharacterize 97.5 0.015 5.2E-07 42.9 17.7 144 67-215 30-215 (354)
314 1cru_A Protein (soluble quinop 97.5 0.02 6.7E-07 43.8 19.6 107 67-173 28-163 (454)
315 2woz_A Kelch repeat and BTB do 97.5 0.015 5.1E-07 42.0 18.9 181 28-218 54-263 (318)
316 3a9g_A Putative uncharacterize 97.5 0.018 6.1E-07 42.5 23.6 106 19-128 28-153 (354)
317 1tl2_A L10, protein (tachylect 97.4 0.0021 7.1E-08 43.7 9.6 109 20-135 41-158 (236)
318 1zgk_A Kelch-like ECH-associat 97.4 0.018 6E-07 41.5 18.4 187 30-226 24-238 (308)
319 2ism_A Putative oxidoreductase 97.4 0.021 7.1E-07 42.1 17.0 145 67-215 32-220 (352)
320 3das_A Putative oxidoreductase 97.4 0.021 7.1E-07 42.0 19.4 147 66-214 32-218 (347)
321 3pbp_A Nucleoporin NUP82; beta 97.4 0.011 3.9E-07 44.3 14.0 106 119-227 30-157 (452)
322 3ei3_A DNA damage-binding prot 97.3 0.069 2.4E-06 45.9 23.7 192 17-216 551-755 (1158)
323 2zwa_A Leucine carboxyl methyl 97.3 0.05 1.7E-06 44.1 18.1 157 30-189 451-639 (695)
324 3ii7_A Kelch-like protein 7; p 97.3 0.025 8.7E-07 40.5 20.2 185 32-226 13-223 (306)
325 4asc_A Kelch repeat and BTB do 97.3 0.016 5.5E-07 41.8 13.7 110 30-145 98-226 (315)
326 2xzh_A Clathrin heavy chain 1; 97.2 0.036 1.2E-06 40.2 23.9 191 26-227 73-289 (365)
327 1tl2_A L10, protein (tachylect 97.1 0.028 9.4E-07 38.3 14.6 144 66-219 41-201 (236)
328 3sbq_A Nitrous-oxide reductase 97.1 0.064 2.2E-06 41.9 21.2 187 30-226 141-406 (638)
329 2g8s_A Glucose/sorbosone dehyd 97.0 0.054 1.8E-06 39.9 15.3 147 66-214 18-214 (353)
330 1cru_A Protein (soluble quinop 97.0 0.078 2.7E-06 40.6 22.0 110 18-128 25-162 (454)
331 2woz_A Kelch repeat and BTB do 96.9 0.061 2.1E-06 38.8 14.6 109 30-144 109-235 (318)
332 1bpo_A Protein (clathrin); cla 96.9 0.08 2.7E-06 40.1 23.6 192 25-227 71-288 (494)
333 2xzh_A Clathrin heavy chain 1; 96.9 0.066 2.2E-06 38.9 20.6 203 12-221 99-325 (365)
334 2zwa_A Leucine carboxyl methyl 96.9 0.13 4.5E-06 41.7 19.3 156 29-187 396-579 (695)
335 2g8s_A Glucose/sorbosone dehyd 96.8 0.087 3E-06 38.8 21.8 120 19-139 17-172 (353)
336 2be1_A Serine/threonine-protei 96.8 0.0037 1.3E-07 45.7 6.7 115 32-149 11-139 (339)
337 2uvk_A YJHT; unknown function, 96.7 0.099 3.4E-06 38.3 15.3 104 30-138 65-224 (357)
338 2uvk_A YJHT; unknown function, 96.6 0.045 1.5E-06 40.2 11.4 148 41-193 168-350 (357)
339 3s25_A Hypothetical 7-bladed b 96.5 0.14 4.9E-06 36.8 16.0 161 29-217 23-203 (302)
340 3s25_A Hypothetical 7-bladed b 96.4 0.15 5.1E-06 36.7 17.1 141 25-187 58-218 (302)
341 2be1_A Serine/threonine-protei 96.1 0.07 2.4E-06 39.0 9.8 115 78-195 11-140 (339)
342 1xi4_A Clathrin heavy chain; a 95.9 0.54 1.8E-05 41.3 15.2 193 26-227 72-288 (1630)
343 3das_A Putative oxidoreductase 95.8 0.38 1.3E-05 35.3 26.1 110 17-128 29-158 (347)
344 1bpo_A Protein (clathrin); cla 95.6 0.52 1.8E-05 35.9 23.8 203 12-221 98-324 (494)
345 3sbq_A Nitrous-oxide reductase 95.3 0.8 2.7E-05 36.0 19.8 189 34-227 73-353 (638)
346 2wg3_C Hedgehog-interacting pr 95.2 0.77 2.6E-05 35.3 14.7 111 19-129 13-158 (463)
347 3ott_A Two-component system se 94.9 1.3 4.5E-05 36.2 21.7 192 20-222 419-621 (758)
348 1xi4_A Clathrin heavy chain; a 94.7 1.5 5.1E-05 38.8 14.2 168 19-192 105-296 (1630)
349 2wg3_C Hedgehog-interacting pr 93.5 2 6.9E-05 33.0 14.2 107 67-173 15-158 (463)
350 3q6k_A 43.2 kDa salivary prote 93.4 1.8 6.1E-05 32.3 22.7 196 20-216 87-342 (381)
351 3qhy_B Beta-lactamase inhibito 92.3 2.2 7.4E-05 30.3 13.4 162 40-224 80-242 (282)
352 3ott_A Two-component system se 92.2 4.1 0.00014 33.4 26.4 186 21-219 104-299 (758)
353 4gq2_M Nucleoporin NUP120; bet 92.0 3.5 0.00012 34.9 12.3 38 111-148 237-274 (950)
354 3zwu_A Alkaline phosphatase PH 91.5 1.7 5.9E-05 34.5 9.4 59 68-127 478-548 (592)
355 1wp5_A Topoisomerase IV; broke 91.4 3 0.0001 30.3 17.9 191 29-225 3-222 (323)
356 3qhy_B Beta-lactamase inhibito 90.0 3.8 0.00013 29.0 12.5 181 20-225 24-204 (282)
357 4fhn_B Nucleoporin NUP120; pro 89.3 2.3 8E-05 36.7 9.1 38 67-104 239-276 (1139)
358 4a9v_A PHOX; hydrolase, beta-p 89.2 5.1 0.00018 31.7 10.0 61 67-128 477-549 (592)
359 4gq2_M Nucleoporin NUP120; bet 89.2 2.7 9.4E-05 35.5 9.2 38 67-104 237-274 (950)
360 3uc1_A DNA gyrase subunit A; D 88.5 5.7 0.00019 28.9 19.6 118 19-140 94-228 (327)
361 4fhn_B Nucleoporin NUP120; pro 88.1 2.4 8.2E-05 36.7 8.4 38 111-148 239-276 (1139)
362 1suu_A DNA gyrase subunit A; t 87.4 6.5 0.00022 28.3 20.1 192 29-226 6-229 (312)
363 3zwu_A Alkaline phosphatase PH 87.4 3 0.0001 33.2 7.9 59 22-83 478-548 (592)
364 4a9v_A PHOX; hydrolase, beta-p 86.7 6 0.0002 31.3 9.0 61 155-215 477-548 (592)
365 3no0_A DNA gyrase subunit A; D 85.4 7.9 0.00027 27.4 19.6 194 20-223 24-239 (276)
366 3f7f_A Nucleoporin NUP120; nuc 82.4 3.9 0.00013 33.3 6.5 37 111-149 223-259 (729)
367 1zi0_A DNA gyrase subunit A; b 78.3 16 0.00056 26.2 19.9 195 29-226 1-224 (307)
368 3f7f_A Nucleoporin NUP120; nuc 78.3 5.1 0.00017 32.6 6.0 37 67-105 223-259 (729)
369 3b7f_A Glycosyl hydrolase, BNR 77.1 20 0.00068 26.5 19.5 115 19-135 54-203 (394)
370 3uc1_A DNA gyrase subunit A; D 76.4 20 0.00067 26.1 20.8 201 20-225 42-276 (327)
371 3l6v_A GYRA, DNA gyrase subuni 75.0 23 0.00079 26.3 20.1 110 27-140 3-132 (370)
372 3b7f_A Glycosyl hydrolase, BNR 74.8 23 0.00079 26.2 19.1 102 31-136 22-143 (394)
373 3no0_A DNA gyrase subunit A; D 72.8 22 0.00076 25.1 18.5 119 17-140 65-196 (276)
374 4hvt_A Ritya.17583.B, post-pro 70.7 43 0.0015 27.5 18.7 196 21-225 130-378 (711)
375 4gz8_A Semaphorin-3A; multi-do 65.0 33 0.0011 27.9 7.7 57 79-135 431-495 (667)
376 3al9_A Plexin-A2; beta-propell 62.5 31 0.0011 27.1 7.1 71 19-91 399-476 (539)
377 1olz_A Semaphorin 4D; developm 60.9 66 0.0023 26.2 9.0 70 20-91 397-477 (663)
378 1q47_A Semaphorin 3A; beta pro 60.5 41 0.0014 26.1 7.4 57 79-135 423-487 (495)
379 3q6k_A 43.2 kDa salivary prote 58.9 54 0.0018 24.5 21.0 139 2-140 128-306 (381)
380 3al9_A Plexin-A2; beta-propell 58.8 30 0.001 27.2 6.5 68 68-135 402-476 (539)
381 3ol2_B Plexin-B1; beta-propell 57.5 44 0.0015 26.2 7.1 69 20-91 387-461 (528)
382 1q47_A Semaphorin 3A; beta pro 55.6 70 0.0024 24.9 7.9 69 21-91 405-487 (495)
383 3nvq_A Semaphorin-7A; beta-pro 51.0 74 0.0025 25.5 7.5 57 79-135 382-444 (590)
384 1suu_A DNA gyrase subunit A; t 50.1 68 0.0023 23.0 21.9 162 20-184 47-230 (312)
385 3kci_A Probable E3 ubiquitin-p 48.9 79 0.0027 23.4 21.2 115 21-139 106-240 (389)
386 2zux_A YESW protein; beta-prop 44.9 1.2E+02 0.004 24.3 19.1 106 41-147 151-308 (591)
387 3nvq_A Semaphorin-7A; beta-pro 43.7 72 0.0025 25.5 6.4 71 20-92 362-445 (590)
388 1zvt_A Topoisomerase IV subuni 39.0 96 0.0033 21.5 12.1 143 79-226 4-161 (256)
389 3ol2_B Plexin-B1; beta-propell 37.7 1.4E+02 0.005 23.4 7.2 57 167-223 401-461 (528)
390 1zvt_A Topoisomerase IV subuni 36.3 1.1E+02 0.0036 21.3 11.7 115 21-140 34-163 (256)
391 3mez_B Mannose-specific lectin 35.3 69 0.0024 18.8 8.2 10 174-183 65-74 (113)
392 1sqj_A OXG-RCBH, oligoxylogluc 33.3 2.1E+02 0.0072 23.8 16.7 63 65-128 14-83 (789)
393 3oky_A Plexin-A2; transmembran 32.4 1.4E+02 0.0047 24.5 6.5 57 79-135 414-475 (681)
394 4gz8_A Semaphorin-3A; multi-do 32.3 2.1E+02 0.0071 23.4 9.4 70 20-91 412-495 (667)
395 3l6v_A GYRA, DNA gyrase subuni 31.3 1.6E+02 0.0055 21.8 17.9 75 18-95 97-179 (370)
396 1olz_A Semaphorin 4D; developm 29.0 2.4E+02 0.0081 23.1 8.1 57 79-135 417-477 (663)
397 1ukf_A Avirulence protein AVRP 28.2 1.1E+02 0.0036 20.3 4.3 35 156-190 121-155 (188)
398 3kci_A Probable E3 ubiquitin-p 26.2 2E+02 0.0068 21.2 24.7 112 22-139 55-186 (389)
399 3oky_A Plexin-A2; transmembran 24.8 2.4E+02 0.0082 23.1 6.7 70 20-91 399-475 (681)
400 3oky_B Putative uncharacterize 24.4 2.7E+02 0.0093 22.2 8.2 73 20-92 403-496 (565)
401 1wp5_A Topoisomerase IV; broke 23.0 2.2E+02 0.0074 20.6 23.7 160 20-184 39-224 (323)
402 1vc3_B L-aspartate-alpha-decar 21.9 1.1E+02 0.0039 17.6 3.1 20 41-60 18-37 (96)
403 3oky_B Putative uncharacterize 20.4 3.3E+02 0.011 21.7 6.6 27 109-135 469-495 (565)
No 1
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.1e-44 Score=267.62 Aligned_cols=219 Identities=18% Similarity=0.150 Sum_probs=183.7
Q ss_pred CCcCCccccceeE--EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC
Q 040370 1 FFDFSKATAKRAF--RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG 78 (228)
Q Consensus 1 iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 78 (228)
|||+...+..... ...+|...|++++|+|++++|++|+.|++|++||+++++.+..+.. | ...|.+++|+|++.
T Consensus 107 lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~---h-~~~V~~~~~~~~~~ 182 (344)
T 4gqb_B 107 LWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRA---H-AAQVTCVAASPHKD 182 (344)
T ss_dssp EEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---C-SSCEEEEEECSSCT
T ss_pred EEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC---c-CCceEEEEecCCCC
Confidence 5888766554433 3458999999999999999999999999999999999988776643 3 88999999999875
Q ss_pred -eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeee
Q 040370 79 -MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLR 156 (228)
Q Consensus 79 -~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 156 (228)
+|++|+.|+.|++||+++++....+....+...+.+++|+| ++++|++|+.|+.|++||+++++.+..+.+ |...+
T Consensus 183 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~--h~~~v 260 (344)
T 4gqb_B 183 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV--HSQCV 260 (344)
T ss_dssp TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC--CSSCE
T ss_pred CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC--CCCCE
Confidence 78999999999999999999888876655567789999999 567889999999999999999999998887 67789
Q ss_pred eEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc-EEEEecCCCCEEEeeec
Q 040370 157 FQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA-AFITCGTDRSVRFWKEI 227 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~ 227 (228)
.+++|+|++..++++++.|+.|++||+++++... + .+|.+.|++++|+|+++ +|+++|.||+|++|++.
T Consensus 261 ~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~-~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 261 TGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S-QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp EEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E-cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 9999999986655556669999999999887654 4 68999999999999876 57799999999999974
No 2
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.2e-44 Score=265.25 Aligned_cols=212 Identities=16% Similarity=0.222 Sum_probs=180.1
Q ss_pred eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370 12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL 91 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 91 (228)
......|...|.+++|+|++ .|++|+.||.|+|||+++++...........|.+.|++++|+|++++|++|+.|++|++
T Consensus 75 ~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~i 153 (344)
T 4gqb_B 75 CSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKV 153 (344)
T ss_dssp CSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 34445678899999999985 68899999999999999987655544433345899999999999999999999999999
Q ss_pred EeCCCCceeeEEecccccceeEEEEECCCCC-EEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370 92 WDGVSANCVRSIVGAHGTAEATSANFTKDQR-FVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS 170 (228)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
||+++++.+..+..| ...|.+++|+|++. +|++++.|++|++||+++++....+....+...+.++.|+|++..+++
T Consensus 154 wd~~~~~~~~~~~~h--~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 231 (344)
T 4gqb_B 154 WDLAQQVVLSSYRAH--AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV 231 (344)
T ss_dssp EETTTTEEEEEECCC--SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEE
T ss_pred EECCCCcEEEEEcCc--CCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceE
Confidence 999999999998876 77999999999874 789999999999999999998888766556667889999998776666
Q ss_pred eeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCC-cEEEEecCCCCEEEeeec
Q 040370 171 IDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAE-AAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 171 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~ 227 (228)
+++.|+.|++||+++++.+..+ .+|...|++++|+|++ ++|++|+.|++|+|||+.
T Consensus 232 sg~~dg~v~~wd~~~~~~~~~~-~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~ 288 (344)
T 4gqb_B 232 FGDENGTVSLVDTKSTSCVLSS-AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSS 288 (344)
T ss_dssp EEETTSEEEEEESCC--CCEEE-ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred EeccCCcEEEEECCCCcEEEEE-cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECC
Confidence 6667899999999999998888 7899999999999987 579999999999999964
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-43 Score=259.25 Aligned_cols=215 Identities=17% Similarity=0.342 Sum_probs=191.9
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
|||+... +....+..|...+.+++|+|++++|++|+.|+.|++|++++++....+... ...|.+++|+|++++|
T Consensus 106 lWd~~~~--~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~----~~~v~~~~~spdg~~l 179 (321)
T 3ow8_A 106 LWDLENG--KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR----GKFILSIAYSPDGKYL 179 (321)
T ss_dssp EEETTTT--EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECS----SSCEEEEEECTTSSEE
T ss_pred EEECCCC--CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCC----CceEEEEEECCCCCEE
Confidence 4777644 344455578889999999999999999999999999999998876554432 6789999999999999
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV 160 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
++|+.||.|++||+++++.+..+..+ ..+|.+++|+|++++|++++.|+.|++||+++++....+.+ |...+..++
T Consensus 180 asg~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~ 255 (321)
T 3ow8_A 180 ASGAIDGIINIFDIATGKLLHTLEGH--AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG--HASWVLNVA 255 (321)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCC--SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC--CSSCEEEEE
T ss_pred EEEcCCCeEEEEECCCCcEEEEEccc--CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC--CCCceEEEE
Confidence 99999999999999999998888776 67899999999999999999999999999999988888876 677889999
Q ss_pred ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
|+|++.++++++. |+.|++||+++++.+..+ .+|...|.+++|+|++++|++++.||.|++||..
T Consensus 256 ~sp~~~~l~s~s~-D~~v~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 256 FCPDDTHFVSSSS-DKSVKVWDVGTRTCVHTF-FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ECTTSSEEEEEET-TSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred ECCCCCEEEEEeC-CCcEEEEeCCCCEEEEEE-cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999888666 899999999999998888 7899999999999999999999999999999975
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3e-43 Score=258.07 Aligned_cols=217 Identities=15% Similarity=0.236 Sum_probs=193.8
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
|||+..........+.+|...|.+++|+|++.++++++.|+.|++||+.+++....+... ...+.+++|+|++++|
T Consensus 62 vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~----~~~~~~~~~spdg~~l 137 (321)
T 3ow8_A 62 VWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAG----PVDAWTLAFSPDSQYL 137 (321)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC----TTCCCCEEECTTSSEE
T ss_pred EEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCC----CccEEEEEECCCCCEE
Confidence 477765554455567799999999999999999999999999999999999877665432 6678999999999999
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV 160 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
++|+.||.|++||+++++....+..+ ...+.+++|+|++++|++|+.|+.|++||+++++.+..+.+ +...+.++.
T Consensus 138 ~~g~~dg~v~i~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~ 213 (321)
T 3ow8_A 138 ATGTHVGKVNIFGVESGKKEYSLDTR--GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG--HAMPIRSLT 213 (321)
T ss_dssp EEECTTSEEEEEETTTCSEEEEEECS--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC--CSSCCCEEE
T ss_pred EEEcCCCcEEEEEcCCCceeEEecCC--CceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc--cCCceeEEE
Confidence 99999999999999999988887765 66899999999999999999999999999999999888876 667889999
Q ss_pred ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
|+|++.++++++. |+.|++||+++++....+ .+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 214 ~spd~~~l~s~s~-dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~ 278 (321)
T 3ow8_A 214 FSPDSQLLVTASD-DGYIKIYDVQHANLAGTL-SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG 278 (321)
T ss_dssp ECTTSCEEEEECT-TSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EcCCCCEEEEEcC-CCeEEEEECCCcceeEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence 9999998887655 899999999999888877 7899999999999999999999999999999964
No 5
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.9e-43 Score=262.68 Aligned_cols=219 Identities=16% Similarity=0.184 Sum_probs=183.6
Q ss_pred CCcCCccccce--eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC
Q 040370 1 FFDFSKATAKR--AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG 78 (228)
Q Consensus 1 iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 78 (228)
|||+....... .+...+|...|++++|+|++++|++|+.|+.|++||+++++....+.. | ...|++++|+|++.
T Consensus 119 lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~---h-~~~v~~v~~s~~~~ 194 (357)
T 4g56_B 119 LWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA---H-SSEVNCVAACPGKD 194 (357)
T ss_dssp EC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECC---C-SSCEEEEEECTTCS
T ss_pred EeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC---C-CCCEEEEEEccCCC
Confidence 58887654433 344558999999999999999999999999999999999987776653 2 78899999999875
Q ss_pred -eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCC-CCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeee
Q 040370 79 -MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD-QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLR 156 (228)
Q Consensus 79 -~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 156 (228)
++++++.||.|++||+++++....+....+...+.+++|+|+ +.+|++|+.|+.|++||+++++.+..+.. +...+
T Consensus 195 ~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~--~~~~v 272 (357)
T 4g56_B 195 TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV--HSQNI 272 (357)
T ss_dssp SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC--CSSCE
T ss_pred ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec--cceeE
Confidence 789999999999999999988877766555778999999996 56889999999999999999998888876 66788
Q ss_pred eEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeeec
Q 040370 157 FQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~ 227 (228)
.+++|+|++..++++++.|+.|++||+++++.+..+ +|.+.|++++|+| ++.+|+|+|.||.|++|++.
T Consensus 273 ~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 273 TGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 999999998665555666899999999998877654 8999999999999 79999999999999999974
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.2e-42 Score=250.93 Aligned_cols=208 Identities=17% Similarity=0.276 Sum_probs=181.4
Q ss_pred eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEE
Q 040370 11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIR 90 (228)
Q Consensus 11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 90 (228)
....+.+|...|++++|+|++++|++|+.||.|++||+++++....+... ..+|.+++|+|++++|++|+.|+.|+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVT----ETPVRAGKFIARKNWIIVGSDDFRIR 80 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC----SSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeecc----CCcEEEEEEeCCCCEEEEECCCCEEE
Confidence 34556789999999999999999999999999999999998876655432 77899999999999999999999999
Q ss_pred EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe-eEEEEecceeeeeeeEEEECCCC-cEE
Q 040370 91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR-LVKQYLGATHTQLRFQAVFNDTE-EFV 168 (228)
Q Consensus 91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~ 168 (228)
+||+++++.+..+..| ...|.+++|+|++++|++|+.|++|++||++++. ....+.+ |...+.++.|+|.+ ..+
T Consensus 81 vwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~--h~~~v~~v~~~p~~~~~l 156 (304)
T 2ynn_A 81 VFNYNTGEKVVDFEAH--PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG--HEHFVMCVAFNPKDPSTF 156 (304)
T ss_dssp EEETTTCCEEEEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECC--CCSCEEEEEECTTCTTEE
T ss_pred EEECCCCcEEEEEeCC--CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcc--cCCcEEEEEECCCCCCEE
Confidence 9999999999988876 7789999999999999999999999999999874 4455555 67789999999954 555
Q ss_pred EEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC--CCcEEEEecCCCCEEEeeec
Q 040370 169 LSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP--AEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 169 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~ 227 (228)
++ ++.|+.|++||++++.....+..+|...+..+.|+| ++.+|++++.|+.|++||+.
T Consensus 157 ~s-gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~ 216 (304)
T 2ynn_A 157 AS-GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216 (304)
T ss_dssp EE-EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETT
T ss_pred EE-EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCC
Confidence 55 555899999999988887777667888999999987 77899999999999999964
No 7
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.7e-42 Score=254.24 Aligned_cols=216 Identities=14% Similarity=0.275 Sum_probs=188.5
Q ss_pred CCcCCcccc--ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC
Q 040370 1 FFDFSKATA--KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG 78 (228)
Q Consensus 1 iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 78 (228)
+||+..... .....+.+|...|.++.|++++. +++++.|+.|++||+++++....+.. | .+.|.+++|+|+++
T Consensus 123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~---h-~~~v~~~~~~~~~~ 197 (340)
T 1got_B 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTG---H-TGDVMSLSLAPDTR 197 (340)
T ss_dssp EEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECC---C-SSCEEEEEECTTSS
T ss_pred EEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcC---C-CCceEEEEECCCCC
Confidence 466654332 33455668999999999998775 88999999999999999987765543 3 78899999999999
Q ss_pred eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeE
Q 040370 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQ 158 (228)
Q Consensus 79 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 158 (228)
++++|+.||.|++||+++++....+..| ...|.+++|+|++++|++|+.|+.|++||+++++.+..+....+...+.+
T Consensus 198 ~l~sg~~d~~v~~wd~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~ 275 (340)
T 1got_B 198 LFVSGACDASAKLWDVREGMCRQTFTGH--ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred EEEEEeCCCcEEEEECCCCeeEEEEcCC--cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence 9999999999999999999988888776 67899999999999999999999999999999888777754434456889
Q ss_pred EEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 159 AVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
+.|+|++.++++++. |+.|++||+.+++....+ .+|.++|.+++|+|++.+|++|+.||.|++||
T Consensus 276 ~~~s~~g~~l~~g~~-d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 276 VSFSKSGRLLLAGYD-DFNCNVWDALKADRAGVL-AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECTTSSEEEEEET-TSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECCCCCEEEEECC-CCeEEEEEcccCcEeeEe-ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999988766 899999999999888877 79999999999999999999999999999997
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.3e-42 Score=250.85 Aligned_cols=216 Identities=16% Similarity=0.266 Sum_probs=181.7
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
|||+... .....+..|..+|.+++|+|++++|++|+.|+.|++||+.+++....+.. | ...|.+++|+|++++|
T Consensus 39 lWd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~---h-~~~v~~~~~~~~~~~l 112 (304)
T 2ynn_A 39 LWNYETQ--VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA---H-PDYIRSIAVHPTKPYV 112 (304)
T ss_dssp EEETTTT--EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC---C-SSCEEEEEECSSSSEE
T ss_pred EEECCCC--ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeC---C-CCcEEEEEEcCCCCEE
Confidence 5777643 34455667999999999999999999999999999999999987765543 3 8899999999999999
Q ss_pred EEEecCCeEEEEeCCCCcee-eEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeE
Q 040370 81 VTASKDGAIRLWDGVSANCV-RSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQ 158 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 158 (228)
++|+.||+|++||++++... ..+..| ...|.+++|+| ++.+|++|+.|++|++||++++.....+... +...+..
T Consensus 113 ~sgs~D~~v~lWd~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~-~~~~v~~ 189 (304)
T 2ynn_A 113 LSGSDDLTVKLWNWENNWALEQTFEGH--EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG-QERGVNY 189 (304)
T ss_dssp EEEETTSCEEEEEGGGTTEEEEEECCC--CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECC-CTTCEEE
T ss_pred EEECCCCeEEEEECCCCcchhhhhccc--CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccC-CcCcEEE
Confidence 99999999999999887544 445554 77899999999 6789999999999999999887766655432 3345566
Q ss_pred EEECC--CCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 159 AVFND--TEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 159 ~~~~~--~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+.+.| ++.++++++. |+.|++||+++++.+..+ .+|...|.+++|+|++++|++|+.||.|++||+.
T Consensus 190 ~~~~~~~~~~~l~s~s~-D~~i~iWd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 190 VDYYPLPDKPYMITASD-DLTIKIWDYQTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp EEECCSTTCCEEEEEET-TSEEEEEETTTTEEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred EEEEEcCCCCEEEEEcC-CCeEEEEeCCCCccceee-CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 67765 5667776555 899999999999988888 7899999999999999999999999999999963
No 9
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.3e-42 Score=259.31 Aligned_cols=215 Identities=21% Similarity=0.404 Sum_probs=190.3
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
|||+... .....+.+|...|.+++|+|++++|++|+.|+.|++||+.++.+...+.. | ...|.++.|+|+++++
T Consensus 176 iwd~~~~--~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~---h-~~~v~~~~~~~~g~~l 249 (410)
T 1vyh_C 176 LWDFQGF--ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG---H-REWVRMVRPNQDGTLI 249 (410)
T ss_dssp EEETTSS--CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC---C-SSCEEEEEECTTSSEE
T ss_pred EEeCCCC--ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeC---C-CccEEEEEECCCCCEE
Confidence 4777643 33444568999999999999999999999999999999999987765542 3 7889999999999999
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCC--------------------CCEEEEeeCCCeEEEEEccC
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD--------------------QRFVLSCGKDSTVKLWEVSS 140 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~~~~d~~i~~wd~~~ 140 (228)
++|+.|+.|++||+++++....+..| ...|.+++|+|+ +.+|++|+.|+.|++||+++
T Consensus 250 ~s~s~D~~v~vwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~ 327 (410)
T 1vyh_C 250 ASCSNDQTVRVWVVATKECKAELREH--RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 327 (410)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred EEEcCCCeEEEEECCCCceeeEecCC--CceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence 99999999999999999988888776 678999999996 66899999999999999999
Q ss_pred CeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCC
Q 040370 141 GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRS 220 (228)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 220 (228)
++.+..+.+ |...+.++.|+|++.++++++. |+.|++||+++++.+..+ .+|...|++++|+|++.+|++|+.||.
T Consensus 328 ~~~~~~~~~--h~~~v~~v~~~~~g~~l~s~s~-D~~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~sgs~D~~ 403 (410)
T 1vyh_C 328 GMCLMTLVG--HDNWVRGVLFHSGGKFILSCAD-DKTLRVWDYKNKRCMKTL-NAHEHFVTSLDFHKTAPYVVTGSVDQT 403 (410)
T ss_dssp TEEEEEEEC--CSSCEEEEEECSSSSCEEEEET-TTEEEEECCTTSCCCEEE-ECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred CceEEEEEC--CCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceEEEE-cCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence 999988877 6778899999999999998666 899999999999988887 789999999999999999999999999
Q ss_pred EEEeeec
Q 040370 221 VRFWKEI 227 (228)
Q Consensus 221 i~vwd~~ 227 (228)
|++|+++
T Consensus 404 i~vW~~r 410 (410)
T 1vyh_C 404 VKVWECR 410 (410)
T ss_dssp EEEEC--
T ss_pred EEEEeCC
Confidence 9999964
No 10
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6e-42 Score=259.01 Aligned_cols=215 Identities=21% Similarity=0.404 Sum_probs=189.8
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
|||+.... ....+.+|...|.+++|+|++++|++|+.|++|++||+.+++++..+.. | ...|.+++|+|+++++
T Consensus 134 vwd~~~~~--~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~---h-~~~V~~v~~~p~~~~l 207 (410)
T 1vyh_C 134 VWDYETGD--FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHG---H-DHNVSSVSIMPNGDHI 207 (410)
T ss_dssp EEETTTCC--CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCC---C-SSCEEEEEECSSSSEE
T ss_pred EEECCCCc--EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcC---C-CCCEEEEEEeCCCCEE
Confidence 57777544 3445668999999999999999999999999999999999887665542 3 7889999999999999
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV 160 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
++|+.|+.|++||++++..+..+..| ...+.++.++|++.++++|+.|+.|++||+++++....+.. |...+.++.
T Consensus 208 ~s~s~D~~i~~wd~~~~~~~~~~~~h--~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~--h~~~v~~~~ 283 (410)
T 1vyh_C 208 VSASRDKTIKMWEVQTGYCVKTFTGH--REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE--HRHVVECIS 283 (410)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC--CSSCEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEeCC--CccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecC--CCceEEEEE
Confidence 99999999999999999999888876 67899999999999999999999999999999988888866 667788999
Q ss_pred ECCC--------------------CcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCC
Q 040370 161 FNDT--------------------EEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRS 220 (228)
Q Consensus 161 ~~~~--------------------~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 220 (228)
|+|+ +.++++ ++.|+.|++||+++++.+..+ .+|...|.+++|+|++++|++|+.||.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s-gs~D~~i~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~g~~l~s~s~D~~ 361 (410)
T 1vyh_C 284 WAPESSYSSISEATGSETKKSGKPGPFLLS-GSRDKTIKMWDVSTGMCLMTL-VGHDNWVRGVLFHSGGKFILSCADDKT 361 (410)
T ss_dssp ECCSCGGGGGGGCCSCC-------CCEEEE-EETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECSSSSCEEEEETTTE
T ss_pred EcCcccccchhhhccccccccCCCCCEEEE-EeCCCeEEEEECCCCceEEEE-ECCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 9986 445655 455899999999999988887 689999999999999999999999999
Q ss_pred EEEeeec
Q 040370 221 VRFWKEI 227 (228)
Q Consensus 221 i~vwd~~ 227 (228)
|++||+.
T Consensus 362 i~vwd~~ 368 (410)
T 1vyh_C 362 LRVWDYK 368 (410)
T ss_dssp EEEECCT
T ss_pred EEEEECC
Confidence 9999963
No 11
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.7e-41 Score=250.82 Aligned_cols=207 Identities=20% Similarity=0.292 Sum_probs=184.3
Q ss_pred eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC--CCCeEEEEecCCe
Q 040370 11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS--TGGMYVTASKDGA 88 (228)
Q Consensus 11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~ 88 (228)
....+..|...|.+++|+|++..|++++.|++|++||+++++....+.. | ...|.+++|+| ++++|++|+.||.
T Consensus 146 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~---h-~~~v~~~~~~~~~~g~~l~sgs~Dg~ 221 (354)
T 2pbi_B 146 KKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG---H-GADVLCLDLAPSETGNTFVSGGCDKK 221 (354)
T ss_dssp GCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC---C-SSCEEEEEECCCSSCCEEEEEETTSC
T ss_pred cceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC---C-CCCeEEEEEEeCCCCCEEEEEeCCCe
Confidence 4455668999999999999999999999999999999999987665543 3 78899999987 4689999999999
Q ss_pred EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEE
Q 040370 89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFV 168 (228)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (228)
|++||+++++.+..+..| ...|.+++|+|++++|++++.|++|++||++.++.+..+........+..+.|+|++.++
T Consensus 222 v~~wd~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 299 (354)
T 2pbi_B 222 AMVWDMRSGQCVQAFETH--ESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLL 299 (354)
T ss_dssp EEEEETTTCCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred EEEEECCCCcEEEEecCC--CCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEE
Confidence 999999999998888776 778999999999999999999999999999998877776554444567889999999998
Q ss_pred EEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 169 LSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 169 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
++++. |+.|++||+.+++.+..+ .+|.+.|.+++|+|++++|++|+.||.|++|+
T Consensus 300 ~~g~~-d~~i~vwd~~~~~~~~~l-~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 300 FAGYN-DYTINVWDVLKGSRVSIL-FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEET-TSCEEEEETTTCSEEEEE-CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEC-CCcEEEEECCCCceEEEE-ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 88666 899999999999988877 79999999999999999999999999999996
No 12
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-41 Score=250.43 Aligned_cols=210 Identities=20% Similarity=0.360 Sum_probs=176.6
Q ss_pred ceeEEEeecCc-ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe
Q 040370 10 KRAFRVIQDTH-NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA 88 (228)
Q Consensus 10 ~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 88 (228)
....++.+|.. .|.+++|+|++++||+|+.|+.|+|||++++..........+| ...|.+++|+|++++|++|+.|+.
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGH-QRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSC-SSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeecccc-CCcEEEEEECCCCCEEEEEECCCc
Confidence 34455668887 9999999999999999999999999999987654333333334 889999999999999999999999
Q ss_pred EEEEeCCCCc--eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee---EEEEecceeeeeeeEEEECC
Q 040370 89 IRLWDGVSAN--CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL---VKQYLGATHTQLRFQAVFND 163 (228)
Q Consensus 89 v~iwd~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~ 163 (228)
+++||++.+. ....+..| ...|.+++|+|++++|++++.|+.|++||++++.. +..+.. |...+..+.|+|
T Consensus 85 v~iw~~~~~~~~~~~~~~~h--~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~--h~~~v~~~~~~p 160 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGH--ENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS--HTQDVKHVVWHP 160 (345)
T ss_dssp EEEEEECCC-EEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECC--CCSCEEEEEECS
T ss_pred EEEEEccCCCeEEEEEccCC--CCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecC--cCCCeEEEEECC
Confidence 9999988764 45555554 77999999999999999999999999999987643 334433 677889999999
Q ss_pred CCcEEEEeeCCCCeEEEEEcCCccee--EEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 164 TEEFVLSIDEPSNEIVIWDALTAEKV--AKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 164 ~~~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
++.++++++. |+.|++||.++++.. ..+ .+|...|.+++|+|++++|++++.|+.|++||.
T Consensus 161 ~~~~l~s~s~-d~~i~~w~~~~~~~~~~~~~-~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 161 SQELLASASY-DDTVKLYREEEDDWVCCATL-EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp SSSCEEEEET-TSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CCCEEEEEeC-CCcEEEEEecCCCEEEEEEe-cCCCCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 9999888666 899999999877533 344 789999999999999999999999999999996
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=9.8e-41 Score=243.85 Aligned_cols=210 Identities=20% Similarity=0.408 Sum_probs=188.8
Q ss_pred cceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe
Q 040370 9 AKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA 88 (228)
Q Consensus 9 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 88 (228)
......+.+|..+|++++|+|++++|++|+.||.|++|++.+++....+.. | ...|.+++|+|++++|++|+.||.
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~---h-~~~v~~~~~~~~~~~l~s~~~d~~ 88 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG---H-KLGISDVAWSSDSNLLVSASDDKT 88 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC---C-SSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhcc---C-CCceEEEEEcCCCCEEEEECCCCE
Confidence 344566778999999999999999999999999999999998887655542 2 788999999999999999999999
Q ss_pred EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEE
Q 040370 89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFV 168 (228)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (228)
|++||+++++.+..+..+ ...|.+++|+|++++|++++.|+.|++||+++++.+..+.. +...+..+.|+|++.++
T Consensus 89 i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l 164 (312)
T 4ery_A 89 LKIWDVSSGKCLKTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA--HSDPVSAVHFNRDGSLI 164 (312)
T ss_dssp EEEEETTTCCEEEEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSEE
T ss_pred EEEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC--CCCcEEEEEEcCCCCEE
Confidence 999999999998888876 77899999999999999999999999999999988888766 66778999999999988
Q ss_pred EEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 169 LSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 169 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
++++. |+.|++||+++++.+..+...+..++..++|+|++++|++++.||.|++||+.
T Consensus 165 ~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 222 (312)
T 4ery_A 165 VSSSY-DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222 (312)
T ss_dssp EEEET-TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred EEEeC-CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 88666 89999999999998888766778889999999999999999999999999974
No 14
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.3e-40 Score=243.81 Aligned_cols=207 Identities=15% Similarity=0.258 Sum_probs=182.3
Q ss_pred ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370 10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI 89 (228)
Q Consensus 10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 89 (228)
+....+.+|..+|.+++|+|++++|++|+.||.|++||+.+++........ ...|.+++|+|+++++++|+.|+.+
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~s~~~d~~v 121 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR----SSWVMTCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECS----SSCEEEEEECTTSSEEEEEETTCEE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecC----CccEEEEEECCCCCEEEEEeCCCeE
Confidence 445567789999999999999999999999999999999998876655432 7789999999999999999999999
Q ss_pred EEEeCCCCc----eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCC
Q 040370 90 RLWDGVSAN----CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE 165 (228)
Q Consensus 90 ~iwd~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (228)
++||+.+++ ....+..| ...+.++.|++++. +++++.|+.|++||+++++.+..+.+ |...+.++.|+|++
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~--h~~~v~~~~~~~~~ 196 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGH--TGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTG--HTGDVMSLSLAPDT 196 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECC--SSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECC--CSSCEEEEEECTTS
T ss_pred EEEECccCCCcceeEEEecCC--CccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcC--CCCceEEEEECCCC
Confidence 999998753 33445544 77899999998775 88999999999999999999888876 67788999999999
Q ss_pred cEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 166 EFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 166 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.++++++. |+.|++||++++.....+ .+|...|.+++|+|++++|++|+.||.|++||+.
T Consensus 197 ~~l~sg~~-d~~v~~wd~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~ 256 (340)
T 1got_B 197 RLFVSGAC-DASAKLWDVREGMCRQTF-TGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256 (340)
T ss_dssp SEEEEEET-TSCEEEEETTTCSEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CEEEEEeC-CCcEEEEECCCCeeEEEE-cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence 98887665 899999999999988887 7899999999999999999999999999999974
No 15
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.5e-41 Score=252.45 Aligned_cols=212 Identities=13% Similarity=0.207 Sum_probs=176.3
Q ss_pred eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370 12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL 91 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 91 (228)
.....+|...|.+++|+|++.+ ++++.||+|+|||+.+++...........|...|++++|+|++++|++|+.||.|++
T Consensus 87 ~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~i 165 (357)
T 4g56_B 87 CTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV 165 (357)
T ss_dssp CSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred ecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 4456689999999999999764 567789999999999887655444333344889999999999999999999999999
Q ss_pred EeCCCCceeeEEecccccceeEEEEECCCCC-EEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370 92 WDGVSANCVRSIVGAHGTAEATSANFTKDQR-FVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS 170 (228)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
||+++++.+..+..| ...|.+++|+|++. ++++++.|+.|++||+++++....+....+...+.++.|+|++..+++
T Consensus 166 wd~~~~~~~~~~~~h--~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la 243 (357)
T 4g56_B 166 WDLSQKAVLKSYNAH--SSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA 243 (357)
T ss_dssp EETTTTEEEEEECCC--SSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEE
T ss_pred EECCCCcEEEEEcCC--CCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEE
Confidence 999999999988876 77899999999875 789999999999999999888777766556777899999999876666
Q ss_pred eeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCC-cEEEEecCCCCEEEeeec
Q 040370 171 IDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAE-AAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 171 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~ 227 (228)
+++.|+.|++||+++++....+ .+|...|++++|+|++ ++|++|+.|++|+|||+.
T Consensus 244 ~g~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~ 300 (357)
T 4g56_B 244 CGDETGNVSLVNIKNPDSAQTS-AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDAD 300 (357)
T ss_dssp EEESSSCEEEEESSCGGGCEEE-CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred EeecccceeEEECCCCcEeEEE-eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECC
Confidence 6667899999999999988887 7899999999999987 579999999999999964
No 16
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.1e-40 Score=241.31 Aligned_cols=209 Identities=17% Similarity=0.279 Sum_probs=176.1
Q ss_pred eeEEEeecCcceEEEEEeCCC-CEEEEecCCCeEEEEEcccceE--EeeeccceeeeccceeeEEeCCCCCeEEEEecCC
Q 040370 11 RAFRVIQDTHNVRSVSFHPSG-DFLLAGTDHPIAHLYDVNTFQC--YLSANVPEISVNGAINQVRYSSTGGMYVTASKDG 87 (228)
Q Consensus 11 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 87 (228)
...++.+|.++|++++|+|++ ++|++|+.|++|++|++..... ........+| ...|.+++|+|++++|++|+.|+
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH-SHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECC-SSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCC-cccEEEEEECCCCCEEEEEeCCC
Confidence 344566899999999999954 8999999999999999875321 1112222333 88999999999999999999999
Q ss_pred eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCc-
Q 040370 88 AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEE- 166 (228)
Q Consensus 88 ~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 166 (228)
+|++||+++++....+..| ...|.+++|+|++.++++|+.|++|++||++. +.+..+.+ |...+..+.+.|...
T Consensus 88 ~v~~wd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~--h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGH--KSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLG--HNDWVSQVRVVPNEKA 162 (319)
T ss_dssp EEEEEETTTTEEEEEEECC--SSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECC--CSSCEEEEEECCC---
T ss_pred EEEEEECCCCCeeEEEccC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEec--cCCcEEEEEEccCCCC
Confidence 9999999999999888876 77899999999999999999999999999974 56666655 667788888988543
Q ss_pred -----EEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 167 -----FVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 167 -----~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.+++ ++.|+.|++||+++.+....+ .+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 163 ~~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~ 226 (319)
T 3frx_A 163 DDDSVTIIS-AGNDKMVKAWNLNQFQIEADF-IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226 (319)
T ss_dssp ---CCEEEE-EETTSCEEEEETTTTEEEEEE-CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred CCCccEEEE-EeCCCEEEEEECCcchhheee-cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 4555 555899999999998888777 7899999999999999999999999999999974
No 17
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.3e-39 Score=241.75 Aligned_cols=208 Identities=16% Similarity=0.234 Sum_probs=180.0
Q ss_pred ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370 10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI 89 (228)
Q Consensus 10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 89 (228)
+....+.+|...|++++|+|++++|++|+.|++|++||..+++.......+ ...|.+++|+|+++.+++|+.|+.+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~----~~~v~~~~~sp~g~~lasg~~d~~i 130 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMP----CTWVMACAYAPSGCAIACGGLDNKC 130 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS----SSCCCEEEECTTSSEEEEESTTSEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecC----CCCEEEEEECCCCCEEEEeeCCCCE
Confidence 345567799999999999999999999999999999999888766555432 6789999999999999999999999
Q ss_pred EEEeCCCC------ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECC
Q 040370 90 RLWDGVSA------NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFND 163 (228)
Q Consensus 90 ~iwd~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (228)
++|++... .....+..| ...|.++.|+|++..|++++.|++|++||+++++.+..+.+ |...+.++.++|
T Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~--h~~~v~~~~~~~ 206 (354)
T 2pbi_B 131 SVYPLTFDKNENMAAKKKSVAMH--TNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG--HGADVLCLDLAP 206 (354)
T ss_dssp EEEECCCCTTCCSGGGCEEEEEC--SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEECC
T ss_pred EEEEEeccccccccccceeeecc--CCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC--CCCCeEEEEEEe
Confidence 99998643 234445544 77899999999999999999999999999999999988877 566677777877
Q ss_pred C--CcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 164 T--EEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 164 ~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+ +.++++++. |+.|++||+++++.+..+ .+|...|.+++|+|++.+|++++.|+.|++||+.
T Consensus 207 ~~~g~~l~sgs~-Dg~v~~wd~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~ 270 (354)
T 2pbi_B 207 SETGNTFVSGGC-DKKAMVWDMRSGQCVQAF-ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR 270 (354)
T ss_dssp CSSCCEEEEEET-TSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCCCEEEEEeC-CCeEEEEECCCCcEEEEe-cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 4 566666554 899999999999988887 7899999999999999999999999999999974
No 18
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.7e-40 Score=244.00 Aligned_cols=222 Identities=17% Similarity=0.318 Sum_probs=177.4
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
|||...........+.+|..+|.+++|+|++++|++|+.|+.|++||+..+...........| ...|.+++|+|++++|
T Consensus 87 iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l 165 (345)
T 3fm0_A 87 IWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH-TQDVKHVVWHPSQELL 165 (345)
T ss_dssp EEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC-CSCEEEEEECSSSSCE
T ss_pred EEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc-CCCeEEEEECCCCCEE
Confidence 477665555556677789999999999999999999999999999999876533323232333 7889999999999999
Q ss_pred EEEecCCeEEEEeCCCCcee--eEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC---------------ee
Q 040370 81 VTASKDGAIRLWDGVSANCV--RSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG---------------RL 143 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~---------------~~ 143 (228)
++|+.|+.|++||.++++.. ..+..| ...|.+++|+|++++|++++.|++|++||.... +.
T Consensus 166 ~s~s~d~~i~~w~~~~~~~~~~~~~~~h--~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~ 243 (345)
T 3fm0_A 166 ASASYDDTVKLYREEEDDWVCCATLEGH--ESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC 243 (345)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred EEEeCCCcEEEEEecCCCEEEEEEecCC--CCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence 99999999999999887643 445544 779999999999999999999999999997432 12
Q ss_pred EEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcce--------eEEeecCCCCCcEEEEeCCCC-cEEEE
Q 040370 144 VKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK--------VAKWSSNHIGAPRWIEHSPAE-AAFIT 214 (228)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--------~~~~~~~~~~~v~~~~~~~~~-~~l~s 214 (228)
+..+.+ .|...+..+.|+|++..+++++. |+.|++|+...... ......+|...|++++|+|++ .+|++
T Consensus 244 ~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS 321 (345)
T 3fm0_A 244 ICTLSG-FHSRTIYDIAWCQLTGALATACG-DDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS 321 (345)
T ss_dssp EEEECS-SCSSCEEEEEECTTTCCEEEEET-TSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEE
T ss_pred eEEecC-CCCCcEEEEEEecCCCEEEEEeC-CCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEE
Confidence 222222 25667889999999999888776 79999999875431 122235899999999999987 59999
Q ss_pred ecCCCCEEEeeec
Q 040370 215 CGTDRSVRFWKEI 227 (228)
Q Consensus 215 ~~~dg~i~vwd~~ 227 (228)
|+.||.|++|++.
T Consensus 322 ~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 322 CSDDGEVAFWKYQ 334 (345)
T ss_dssp EETTSCEEEEEEC
T ss_pred cCCCCcEEEEEec
Confidence 9999999999974
No 19
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.9e-39 Score=237.80 Aligned_cols=217 Identities=16% Similarity=0.309 Sum_probs=180.4
Q ss_pred CCcCCcccc---ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCC
Q 040370 1 FFDFSKATA---KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG 77 (228)
Q Consensus 1 iwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 77 (228)
+||+..... .+...+.+|...|.+++|+|++++|++|+.|++|++||+.+++....+.. | ...|.+++|+|++
T Consensus 44 ~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~---h-~~~v~~~~~~~~~ 119 (319)
T 3frx_A 44 SWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVG---H-KSDVMSVDIDKKA 119 (319)
T ss_dssp EEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC---C-SSCEEEEEECTTS
T ss_pred EecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEcc---C-CCcEEEEEEcCCC
Confidence 466653322 23456678999999999999999999999999999999999987665542 3 8899999999999
Q ss_pred CeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCC------CCEEEEeeCCCeEEEEEccCCeeEEEEecce
Q 040370 78 GMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD------QRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT 151 (228)
Q Consensus 78 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 151 (228)
+++++|+.|+.|++||++ ++.+..+..| ...+.++.|.|. +..+++++.|+.|++||+++.+....+.+
T Consensus 120 ~~l~s~s~D~~i~vwd~~-~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-- 194 (319)
T 3frx_A 120 SMIISGSRDKTIKVWTIK-GQCLATLLGH--NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG-- 194 (319)
T ss_dssp CEEEEEETTSCEEEEETT-SCEEEEECCC--SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECC--
T ss_pred CEEEEEeCCCeEEEEECC-CCeEEEEecc--CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecC--
Confidence 999999999999999986 4556666665 678999999985 44899999999999999999988888776
Q ss_pred eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee--------------------------------------
Q 040370 152 HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS-------------------------------------- 193 (228)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-------------------------------------- 193 (228)
|...+.++.|+|++.++++++. |+.|++||+++++.+..+.
T Consensus 195 h~~~v~~~~~sp~g~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~ 273 (319)
T 3frx_A 195 HNSNINTLTASPDGTLIASAGK-DGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDD 273 (319)
T ss_dssp CCSCEEEEEECTTSSEEEEEET-TCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEE
T ss_pred CCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeec
Confidence 6778999999999999988766 8999999998776543321
Q ss_pred ---------cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 194 ---------SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 194 ---------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
..|...+.+++|+|+|++|++|+.||.|++||+.
T Consensus 274 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 274 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp ECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred cCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 0134467889999999999999999999999974
No 20
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1e-39 Score=237.01 Aligned_cols=220 Identities=19% Similarity=0.246 Sum_probs=174.4
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeC--CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC--
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHP--SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-- 76 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 76 (228)
|||+.....+....+.+|..+|.+++|+| ++++|++|+.|++|++||+++++..... .... |...|.+++|+|+
T Consensus 35 iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~-~~~~-h~~~v~~v~~~p~~~ 112 (297)
T 2pm7_B 35 IFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIA-VHAV-HSASVNSVQWAPHEY 112 (297)
T ss_dssp EEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCE-EECC-CSSCEEEEEECCGGG
T ss_pred EEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEE-Eeec-CCCceeEEEeCcCCC
Confidence 57776554455667779999999999986 4899999999999999999876421111 1112 3788999999997
Q ss_pred CCeEEEEecCCeEEEEeCCCCce--eeEEecccccceeEEEEECCC-------------CCEEEEeeCCCeEEEEEccCC
Q 040370 77 GGMYVTASKDGAIRLWDGVSANC--VRSIVGAHGTAEATSANFTKD-------------QRFVLSCGKDSTVKLWEVSSG 141 (228)
Q Consensus 77 ~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~i~~~~~~~~-------------~~~l~~~~~d~~i~~wd~~~~ 141 (228)
+++|++++.|+.|++||++++.. ...+..| ...|.+++|+|+ +++|++|+.|+.|++||++++
T Consensus 113 g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~ 190 (297)
T 2pm7_B 113 GPMLLVASSDGKVSVVEFKENGTTSPIIIDAH--AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD 190 (297)
T ss_dssp CSEEEEEETTSEEEEEEBCSSSCBCCEEEECC--SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETT
T ss_pred CcEEEEEECCCcEEEEEecCCCceeeeeeecc--cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCC
Confidence 88999999999999999987642 3344444 778999999996 579999999999999999876
Q ss_pred e----eEEEEecceeeeeeeEEEECCCC---cEEEEeeCCCCeEEEEEcCCcce--eEEee--cCCCCCcEEEEeCCCCc
Q 040370 142 R----LVKQYLGATHTQLRFQAVFNDTE---EFVLSIDEPSNEIVIWDALTAEK--VAKWS--SNHIGAPRWIEHSPAEA 210 (228)
Q Consensus 142 ~----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~i~i~d~~~~~~--~~~~~--~~~~~~v~~~~~~~~~~ 210 (228)
+ ....+.+ |...+.++.|+|++ .++++ ++.|+.|++||+++... ..... ..|...|.+++|+|+++
T Consensus 191 ~~~~~~~~~l~~--H~~~V~~v~~sp~~~~~~~las-~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 267 (297)
T 2pm7_B 191 AQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYMAS-VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN 267 (297)
T ss_dssp TTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEE-EETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC
T ss_pred CceEEEEEEecC--CCCceEEEEECCCCCCceEEEE-EECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCC
Confidence 5 4445554 77889999999985 55555 55589999999987531 22222 46788999999999999
Q ss_pred EEEEecCCCCEEEeeec
Q 040370 211 AFITCGTDRSVRFWKEI 227 (228)
Q Consensus 211 ~l~s~~~dg~i~vwd~~ 227 (228)
+|++++.||.|++|+..
T Consensus 268 ~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 268 VLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CEEEEETTSCEEEEEEC
T ss_pred EEEEEcCCCcEEEEEEC
Confidence 99999999999999974
No 21
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.3e-39 Score=240.84 Aligned_cols=210 Identities=17% Similarity=0.277 Sum_probs=172.7
Q ss_pred eeEEEeecCcceEEEEE-----eC-CCCEEEEecCCCeEEEEEcccceE----EeeeccceeeeccceeeEEeCCCCCeE
Q 040370 11 RAFRVIQDTHNVRSVSF-----HP-SGDFLLAGTDHPIAHLYDVNTFQC----YLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 11 ~~~~~~~~~~~v~~~~~-----~~-~~~~l~~~~~d~~i~vw~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
....+.+|...|++++| ++ ++++|++|+.|++|++||+...+. ........+| ...|.+++|+|++.++
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h-~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH-NHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCC-SSCEEEEEECSSTTEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccC-CCceEEEEECCCCCEE
Confidence 34456689999999999 77 899999999999999999975431 1111122233 8899999999999999
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV 160 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
++|+.|++|++||+++++....+..| ...|.+++|+|++++|++++.|+.|++||+.............+...+.++.
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h--~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGH--QSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVR 169 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECC--CSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCC--CCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeee
Confidence 99999999999999999998888876 7799999999999999999999999999998543332222224677788999
Q ss_pred ECCCC----------cEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 161 FNDTE----------EFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 161 ~~~~~----------~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
|+|++ .++++++ .|+.|++||. +.+....+ .+|...|.+++|+|++++|++|+.||.|++||+
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~-~~~~~~~~-~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVG-WDGRLKVWNT-NFQIRYTF-KAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEE-TTSEEEEEET-TTEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTCEEEEEES
T ss_pred eccccccccccCCCCCEEEEEc-CCCEEEEEcC-CCceeEEE-cCccccceEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 99987 5666655 4899999994 45555555 689999999999999999999999999999997
No 22
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3e-39 Score=243.07 Aligned_cols=216 Identities=23% Similarity=0.423 Sum_probs=180.5
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCe
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGM 79 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 79 (228)
|||+... +....+.+|...|.+++|+|++++|++|+.|+.|++||+.+++....... ...+.+++|+| ++++
T Consensus 149 iwd~~~~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~ 221 (393)
T 1erj_A 149 IWDIENR--KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI-----EDGVTTVAVSPGDGKY 221 (393)
T ss_dssp EEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-----SSCEEEEEECSTTCCE
T ss_pred EEECCCC--cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc-----CCCcEEEEEECCCCCE
Confidence 4777643 34455668999999999999999999999999999999999887655432 56799999999 8999
Q ss_pred EEEEecCCeEEEEeCCCCceeeEEec-----ccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe------------
Q 040370 80 YVTASKDGAIRLWDGVSANCVRSIVG-----AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR------------ 142 (228)
Q Consensus 80 l~~~~~dg~v~iwd~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~------------ 142 (228)
+++|+.||.|++||+++++.+..+.. ..+...|.+++|+|++++|++|+.|+.|++||+++..
T Consensus 222 l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~ 301 (393)
T 1erj_A 222 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 301 (393)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------C
T ss_pred EEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCc
Confidence 99999999999999999887776631 1236789999999999999999999999999997643
Q ss_pred eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC------CCcEEEEec
Q 040370 143 LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP------AEAAFITCG 216 (228)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~s~~ 216 (228)
....+.+ |...+.+++++|++.++++++. |+.|++||.++++.+..+ .+|...|.+++|++ ++++|++|+
T Consensus 302 ~~~~~~~--h~~~v~~~~~~~~~~~l~sgs~-D~~v~iwd~~~~~~~~~l-~~h~~~v~~v~~~~~~~~~p~~~~l~sgs 377 (393)
T 1erj_A 302 CEVTYIG--HKDFVLSVATTQNDEYILSGSK-DRGVLFWDKKSGNPLLML-QGHRNSVISVAVANGSSLGPEYNVFATGS 377 (393)
T ss_dssp EEEEEEC--CSSCEEEEEECGGGCEEEEEET-TSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred ceEEEec--ccCcEEEEEECCCCCEEEEEeC-CCeEEEEECCCCeEEEEE-CCCCCCEEEEEecCCcCcCCCCCEEEEEC
Confidence 2333444 5677889999999999888665 899999999999988877 78999999999876 688999999
Q ss_pred CCCCEEEeeec
Q 040370 217 TDRSVRFWKEI 227 (228)
Q Consensus 217 ~dg~i~vwd~~ 227 (228)
.||.|++|++.
T Consensus 378 ~Dg~i~iW~~~ 388 (393)
T 1erj_A 378 GDCKARIWKYK 388 (393)
T ss_dssp TTSEEEEEEEE
T ss_pred CCCcEEECccc
Confidence 99999999974
No 23
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-39 Score=237.72 Aligned_cols=208 Identities=18% Similarity=0.306 Sum_probs=167.8
Q ss_pred ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce--EEeeeccceeeeccceeeEEeCCCCCeEEEEecCC
Q 040370 10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ--CYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG 87 (228)
Q Consensus 10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 87 (228)
+....+.+|..+|.+++|+|+ +|++|+.|+.|++||+..+. ....+. ...|...|.+++|+|++++|++|+.|+
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~--~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLD--ETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEEC--TTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEe--cCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 345566789999999999987 99999999999999998753 222221 122388999999999999999999999
Q ss_pred eEEEEeCCC-------CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC----eeEEEEecceeeeee
Q 040370 88 AIRLWDGVS-------ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG----RLVKQYLGATHTQLR 156 (228)
Q Consensus 88 ~v~iwd~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~----~~~~~~~~~~~~~~~ 156 (228)
.|++||++. .+....+..| ...|.+++|+|++++|++|+.|++|++||++.. +.+..+.. |...+
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h--~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~--h~~~v 156 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGH--ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE--HSQDV 156 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC--CSSCE
T ss_pred cEEEEEcccCcCccccceeEEEEcCC--CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc--CCCce
Confidence 999999853 2344555554 778999999999999999999999999999532 34555555 67789
Q ss_pred eEEEECCCCcEEEEeeCCCCeEEEEEcCCc--ceeEEeecCCCCCcEEEEeCCC--CcEEEEecCCCCEEEeeec
Q 040370 157 FQAVFNDTEEFVLSIDEPSNEIVIWDALTA--EKVAKWSSNHIGAPRWIEHSPA--EAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~ 227 (228)
.++.|+|++.++++++. |+.|++||.+++ +.+..+ .+|.+.|.+++|+|+ +.+|++++.|++|++||+.
T Consensus 157 ~~v~~~p~~~~l~s~s~-D~~i~iW~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~ 229 (330)
T 2hes_X 157 KHVIWHPSEALLASSSY-DDTVRIWKDYDDDWECVAVL-NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYM 229 (330)
T ss_dssp EEEEECSSSSEEEEEET-TSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEE
T ss_pred EEEEECCCCCEEEEEcC-CCeEEEEECCCCCeeEEEEc-cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEec
Confidence 99999999998888665 899999998776 455555 789999999999998 6789999999999999963
No 24
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5.5e-39 Score=234.62 Aligned_cols=217 Identities=23% Similarity=0.505 Sum_probs=183.2
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
|||+... +....+.+|...|.+++|+|++++|++|+.|+.|++||+++++....+.. | ..+|.+++|+|+++++
T Consensus 91 vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~-~~~v~~~~~~~~~~~l 164 (312)
T 4ery_A 91 IWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA---H-SDPVSAVHFNRDGSLI 164 (312)
T ss_dssp EEETTTC--CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC---C-SSCEEEEEECTTSSEE
T ss_pred EEECCCC--cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC---C-CCcEEEEEEcCCCCEE
Confidence 4777644 34455668999999999999999999999999999999999887665543 2 7789999999999999
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV 160 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
++++.||.|++||+++++.+..+...+ ...+..++|+|++++|++++.|+.|++||+++++.+..+..+..........
T Consensus 165 ~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 243 (312)
T 4ery_A 165 VSSSYDGLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 243 (312)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCSS-CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEE
T ss_pred EEEeCCCcEEEEECCCCceeeEEeccC-CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEE
Confidence 999999999999999998887775543 6689999999999999999999999999999999988887754443333444
Q ss_pred EC-CCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEec--CCCCEEEeee
Q 040370 161 FN-DTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWKE 226 (228)
Q Consensus 161 ~~-~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg~i~vwd~ 226 (228)
+. +++.++++ ++.|+.|++||+++++.+..+ .+|...|.+++|+|++++|++++ .|+.|++|+.
T Consensus 244 ~~~~~~~~l~s-g~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 244 FSVTGGKWIVS-GSEDNLVYIWNLQTKEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp EECSSSCEEEE-CCTTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred EEeCCCcEEEE-ECCCCEEEEEECCCchhhhhh-hccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 44 45555555 555899999999999988887 78999999999999999999987 6999999986
No 25
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-39 Score=237.34 Aligned_cols=219 Identities=15% Similarity=0.234 Sum_probs=166.1
Q ss_pred CCcCCccccceeEEE-ee-cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceE----EeeeccceeeeccceeeEEeC
Q 040370 1 FFDFSKATAKRAFRV-IQ-DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQC----YLSANVPEISVNGAINQVRYS 74 (228)
Q Consensus 1 iwd~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~----~~~~~~~~~~~~~~i~~~~~~ 74 (228)
|||+..........+ .+ |...|.+++|+|++++|++|+.|+.|++|+++.... ........+| ...|.+++|+
T Consensus 38 lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~s 116 (330)
T 2hes_X 38 LVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGH-ENEVKGVAWS 116 (330)
T ss_dssp EEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEEC
T ss_pred EEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCC-CCcEEEEEEC
Confidence 477765433333333 23 999999999999999999999999999999864321 0111122233 8899999999
Q ss_pred CCCCeEEEEecCCeEEEEeCCCC----ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC--eeEEEEe
Q 040370 75 STGGMYVTASKDGAIRLWDGVSA----NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG--RLVKQYL 148 (228)
Q Consensus 75 ~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--~~~~~~~ 148 (228)
|++++|++|+.|+.|++||++.. +.+..+..| ...|.+++|+|++++|++++.|++|++||++++ +.+..+.
T Consensus 117 p~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~ 194 (330)
T 2hes_X 117 NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEH--SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN 194 (330)
T ss_dssp TTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCC--SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred CCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccC--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc
Confidence 99999999999999999999532 344555554 778999999999999999999999999999876 4566665
Q ss_pred cceeeeeeeEEEECCC--CcEEEEeeCCCCeEEEEEcCCc--------ceeEEeecCCCCCcEEEEeCCCCcEEEEecCC
Q 040370 149 GATHTQLRFQAVFNDT--EEFVLSIDEPSNEIVIWDALTA--------EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTD 218 (228)
Q Consensus 149 ~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~i~d~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 218 (228)
+ |...+.++.|+|+ +..+++ ++.|+.|++||++.+ .....+...|...|.+++|++++ +|++++.|
T Consensus 195 ~--h~~~v~~~~~~~~~~~~~l~s-~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~d 270 (330)
T 2hes_X 195 G--HEGTVWSSDFDKTEGVFRLCS-GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGAD 270 (330)
T ss_dssp C--CSSCEEEEEECCSSSSCEEEE-EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETT
T ss_pred C--CCCcEEEEEecCCCCeeEEEE-EeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCC
Confidence 5 6778899999998 445555 455899999998765 23333423489999999999765 89999999
Q ss_pred CCEEEeee
Q 040370 219 RSVRFWKE 226 (228)
Q Consensus 219 g~i~vwd~ 226 (228)
|.|++||.
T Consensus 271 g~v~iw~~ 278 (330)
T 2hes_X 271 GVLAVYEE 278 (330)
T ss_dssp SCEEEEEE
T ss_pred CEEEEEEc
Confidence 99999996
No 26
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.3e-39 Score=235.12 Aligned_cols=204 Identities=13% Similarity=0.183 Sum_probs=166.0
Q ss_pred EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccc--eEEeeeccceeeeccceeeEEeCC--CCCeEEEEecCCeE
Q 040370 14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTF--QCYLSANVPEISVNGAINQVRYSS--TGGMYVTASKDGAI 89 (228)
Q Consensus 14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v 89 (228)
.+.+|...|++++|+|++++||+|+.|++|+|||+... +....+ .+| .++|.+++|+| ++++|++|+.|++|
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l---~gH-~~~V~~v~~s~~~~g~~l~s~s~D~~v 79 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL---TGH-EGPVWRVDWAHPKFGTILASCSYDGKV 79 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE---CCC-SSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE---ccc-cCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence 34579999999999999999999999999999999753 222222 233 88999999986 38899999999999
Q ss_pred EEEeCCCCc--eeeEEecccccceeEEEEECCC--CCEEEEeeCCCeEEEEEccCCee--EEEEecceeeeeeeEEEECC
Q 040370 90 RLWDGVSAN--CVRSIVGAHGTAEATSANFTKD--QRFVLSCGKDSTVKLWEVSSGRL--VKQYLGATHTQLRFQAVFND 163 (228)
Q Consensus 90 ~iwd~~~~~--~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~ 163 (228)
++||+++++ .+..+..| ...|.+++|+|+ +.+|++++.|+.|++||++++.. ...+.. |...+..+.|+|
T Consensus 80 ~iWd~~~~~~~~~~~~~~h--~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~--h~~~v~~~~~~p 155 (297)
T 2pm7_B 80 MIWKEENGRWSQIAVHAVH--SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDA--HAIGVNSASWAP 155 (297)
T ss_dssp EEEEBSSSCBCCCEEECCC--SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEEC--CSSCEEEEEECC
T ss_pred EEEEcCCCceEEEEEeecC--CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeec--ccCccceEeecC
Confidence 999998874 34445444 778999999997 88999999999999999987632 233433 667788999998
Q ss_pred CC-------------cEEEEeeCCCCeEEEEEcCCcc----eeEEeecCCCCCcEEEEeCCCC---cEEEEecCCCCEEE
Q 040370 164 TE-------------EFVLSIDEPSNEIVIWDALTAE----KVAKWSSNHIGAPRWIEHSPAE---AAFITCGTDRSVRF 223 (228)
Q Consensus 164 ~~-------------~~~~~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~dg~i~v 223 (228)
+. .++++ ++.|+.|++||+++++ ....+ .+|...|.+++|+|++ .+|++++.|++|++
T Consensus 156 ~~~~~~~~~~~~~~~~~l~s-gs~D~~v~lwd~~~~~~~~~~~~~l-~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~i 233 (297)
T 2pm7_B 156 ATIEEDGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCII 233 (297)
T ss_dssp CC------------CCEEEE-EETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred CcccccccCCCCCCcceEEE-EcCCCcEEEEEEcCCCceEEEEEEe-cCCCCceEEEEECCCCCCceEEEEEECCCcEEE
Confidence 73 45555 4558999999998766 33444 6899999999999984 89999999999999
Q ss_pred eeec
Q 040370 224 WKEI 227 (228)
Q Consensus 224 wd~~ 227 (228)
||+.
T Consensus 234 Wd~~ 237 (297)
T 2pm7_B 234 WTQD 237 (297)
T ss_dssp EEES
T ss_pred EEeC
Confidence 9973
No 27
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-38 Score=239.80 Aligned_cols=208 Identities=18% Similarity=0.306 Sum_probs=175.6
Q ss_pred EEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceee--------------eccceeeEEeCCCCC
Q 040370 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEIS--------------VNGAINQVRYSSTGG 78 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~--------------~~~~i~~~~~~~~~~ 78 (228)
.+..+|...|.+++|+|+|++||+|+ ++.+++|++.+++....+...... +...|.+++|+|+++
T Consensus 58 ~~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~ 136 (393)
T 1erj_A 58 HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 136 (393)
T ss_dssp EEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred EEecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC
Confidence 34457999999999999999999987 678999999998876554332110 122489999999999
Q ss_pred eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeE
Q 040370 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQ 158 (228)
Q Consensus 79 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 158 (228)
+|++|+.|+.|++||+++++....+..| ...|.+++|+|++++|++++.|++|++||+++++....+. +...+..
T Consensus 137 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h--~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~~v~~ 211 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIENRKIVMILQGH--EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS---IEDGVTT 211 (393)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---CSSCEEE
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEccC--CCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE---cCCCcEE
Confidence 9999999999999999999988888776 7789999999999999999999999999999998877765 3456788
Q ss_pred EEECC-CCcEEEEeeCCCCeEEEEEcCCcceeEEee------cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 159 AVFND-TEEFVLSIDEPSNEIVIWDALTAEKVAKWS------SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 159 ~~~~~-~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+.++| ++.++++++. |+.|++||+++++.+..+. .+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 212 ~~~~~~~~~~l~~~s~-d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~ 286 (393)
T 1erj_A 212 VAVSPGDGKYIAAGSL-DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 286 (393)
T ss_dssp EEECSTTCCEEEEEET-TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEECCCCCEEEEEcC-CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 89998 6677766554 8999999999988776652 4789999999999999999999999999999974
No 28
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=8.6e-39 Score=238.26 Aligned_cols=203 Identities=11% Similarity=0.131 Sum_probs=167.6
Q ss_pred cCcceEEEEEeCCCCEEEE--ecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC
Q 040370 18 DTHNVRSVSFHPSGDFLLA--GTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV 95 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~--~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~ 95 (228)
+...+++++|+|||+++++ ++.|++|+|||+++++.+..+. + ...|.+++|+|+|+++++++.+ .+++|+..
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~----~-~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~ 205 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE----T-RGEVKDLHFSTDGKVVAYITGS-SLEVISTV 205 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE----C-SSCCCEEEECTTSSEEEEECSS-CEEEEETT
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC----C-CCceEEEEEccCCceEEeccce-eEEEEEec
Confidence 3456899999999999864 4578999999999998766543 2 6789999999999999999855 56667667
Q ss_pred CCceeeEEecccccceeEEEEECCCCCEEEEeeCCC----eEEEEEccCCeeEE--EEecceeeeeeeEEEECCCCcEEE
Q 040370 96 SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS----TVKLWEVSSGRLVK--QYLGATHTQLRFQAVFNDTEEFVL 169 (228)
Q Consensus 96 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 169 (228)
+++.........+...+.+++|+|+++++++++.|+ .+++||+....... ......+...+.+++|+|++++++
T Consensus 206 ~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~la 285 (365)
T 4h5i_A 206 TGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAV 285 (365)
T ss_dssp TCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEE
T ss_pred cCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceE
Confidence 777665544444478899999999999999999887 68899988765422 222223667789999999999988
Q ss_pred EeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 170 SIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 170 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+++. |+.|+|||+++++++..+..+|..+|++++|+|++++|+|||.|++|+|||+.
T Consensus 286 sgs~-D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 286 LASN-DNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp EEET-TSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred EEcC-CCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 8666 89999999999999988768999999999999999999999999999999974
No 29
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.7e-39 Score=242.24 Aligned_cols=221 Identities=17% Similarity=0.313 Sum_probs=183.2
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccce-------------------
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE------------------- 61 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~------------------- 61 (228)
|||..++...+.++..+|...|++++|+|+|++|++|+.||.|++||+++++.+.....+.
T Consensus 129 lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d 208 (420)
T 4gga_A 129 LWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRS 208 (420)
T ss_dssp EEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETT
T ss_pred EEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCC
Confidence 6888877777777777888999999999999999999999999999999887654432110
Q ss_pred ------------------eeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce----eeEEecccccceeEEEEECC
Q 040370 62 ------------------ISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC----VRSIVGAHGTAEATSANFTK 119 (228)
Q Consensus 62 ------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~i~~~~~~~ 119 (228)
..|...+..+.|+|+++++++++.|+.+++|+..+++. +.....+ ...|.+++|+|
T Consensus 209 ~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~--~~~V~~~~~~p 286 (420)
T 4gga_A 209 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH--QGAVKAVAWCP 286 (420)
T ss_dssp SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCC--SSCEEEEEECT
T ss_pred CceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeeccc--CCceeeeeeCC
Confidence 12366788899999999999999999999999987653 3333333 77899999999
Q ss_pred CCC-EEEE--eeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe-eCCCCeEEEEEcCCcceeEEeecC
Q 040370 120 DQR-FVLS--CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI-DEPSNEIVIWDALTAEKVAKWSSN 195 (228)
Q Consensus 120 ~~~-~l~~--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~ 195 (228)
.+. .+++ |+.|+.|++||+++++....+.. ...+..+.|++++..++++ +..|+.|++||+++++++..+ .+
T Consensus 287 ~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l-~g 362 (420)
T 4gga_A 287 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL-KG 362 (420)
T ss_dssp TCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE-CC
T ss_pred CcccEEEEEeecCCCEEEEEeCCccccceeecc---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE-cC
Confidence 654 5554 45899999999999998888764 3456788899998888765 446899999999999999988 79
Q ss_pred CCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 196 HIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 196 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
|.+.|++++|+|++++|+||+.|++|+|||+.
T Consensus 363 H~~~V~~l~~spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 363 HTSRVLSLTMSPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred CCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 99999999999999999999999999999974
No 30
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.3e-39 Score=244.07 Aligned_cols=211 Identities=20% Similarity=0.318 Sum_probs=179.5
Q ss_pred EEEeecCcceEEEEEeCC-CCEEEEecCCCeEEEEEcccceEEeeecc--ceeeeccceeeEEeCC-CCCeEEEEecCCe
Q 040370 13 FRVIQDTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQCYLSANV--PEISVNGAINQVRYSS-TGGMYVTASKDGA 88 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~ 88 (228)
..+.+|...|.++.|+|+ +..|++|+.|++|++||+.+++....+.. ...| ...|.++.|+| ++++|++|+.||.
T Consensus 151 ~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~sgs~D~~ 229 (380)
T 3iz6_a 151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGH-TADVLSLSINSLNANMFISGSCDTT 229 (380)
T ss_dssp CBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSC-CSCEEEEEECSSSCCEEEEEETTSC
T ss_pred eeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCC-ccCeEEEEeecCCCCEEEEEECCCe
Confidence 345689999999999996 56799999999999999999887765532 2233 78899999987 7899999999999
Q ss_pred EEEEeCCC-CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEeccee-----eeeeeEEEEC
Q 040370 89 IRLWDGVS-ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATH-----TQLRFQAVFN 162 (228)
Q Consensus 89 v~iwd~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~-----~~~~~~~~~~ 162 (228)
|++||++. ++.+..+..| ...|.+++|+|++++|++|+.|++|++||+++++.+..+..+.. ...+..++|+
T Consensus 230 v~~wd~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 307 (380)
T 3iz6_a 230 VRLWDLRITSRAVRTYHGH--EGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS 307 (380)
T ss_dssp EEEEETTTTCCCCEEECCC--SSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC
T ss_pred EEEEECCCCCcceEEECCc--CCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEEC
Confidence 99999984 4666777665 77899999999999999999999999999999998887754321 2247889999
Q ss_pred CCCcEEEEeeCCCCeEEEEEcCCcceeEEee---cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 163 DTEEFVLSIDEPSNEIVIWDALTAEKVAKWS---SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 163 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
|++.++++++. ||.|++||..+++....+. .+|.+.|.+++|+|++++|++|+.||.|++|++.
T Consensus 308 ~~g~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 308 ISGRLLFAGYS-NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp SSSSEEEEECT-TSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred CCCCEEEEEEC-CCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 99999998665 8999999999888776652 5799999999999999999999999999999963
No 31
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.2e-39 Score=244.23 Aligned_cols=210 Identities=16% Similarity=0.269 Sum_probs=174.1
Q ss_pred ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370 10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI 89 (228)
Q Consensus 10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 89 (228)
.....+.+|..+|++++|+|++++|++|+.|++|++||+.+++....+.. | ...|.+++|+|++++|++|+.|+.+
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~---h-~~~v~~~~~s~~g~~las~~~d~~v 132 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL---H-CPWVMECAFAPNGQSVACGGLDSAC 132 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC---C-CTTCCCCEECTTSSEEEECCSSSCC
T ss_pred EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEec---C-CCCEEEEEECCCCCEEEEeeCCCcE
Confidence 34456679999999999999999999999999999999999887665543 2 7789999999999999999999999
Q ss_pred EEEeCCCCc-------eeeEEecccccceeEEEEECCC-CCEEEEeeCCCeEEEEEccCCeeEEEEec---ceeeeeeeE
Q 040370 90 RLWDGVSAN-------CVRSIVGAHGTAEATSANFTKD-QRFVLSCGKDSTVKLWEVSSGRLVKQYLG---ATHTQLRFQ 158 (228)
Q Consensus 90 ~iwd~~~~~-------~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~---~~~~~~~~~ 158 (228)
++||+.+.. ....+..| ...+.++.|.|+ +..|++|+.|++|++||+++++.+..+.. ..|...+..
T Consensus 133 ~iw~~~~~~~~~~~~~~~~~~~gh--~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 210 (380)
T 3iz6_a 133 SIFNLSSQADRDGNMPVSRVLTGH--KGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210 (380)
T ss_dssp EEEECCCCSSCCCSSTTCCBCCCC--SSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEE
T ss_pred EEEECCCCccccCCccceeeccCC--CcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEE
Confidence 999987532 22334444 678899999996 45799999999999999999988877632 236677888
Q ss_pred EEECCC-CcEEEEeeCCCCeEEEEEcCCc-ceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 159 AVFNDT-EEFVLSIDEPSNEIVIWDALTA-EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 159 ~~~~~~-~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+.+++. +.++++ ++.|+.|++||++.. +.+..+ .+|.+.|.+++|+|++++|++|+.||+|++||+.
T Consensus 211 ~~~~~~~~~~l~s-gs~D~~v~~wd~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~ 279 (380)
T 3iz6_a 211 LSINSLNANMFIS-GSCDTTVRLWDLRITSRAVRTY-HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR 279 (380)
T ss_dssp EEECSSSCCEEEE-EETTSCEEEEETTTTCCCCEEE-CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETT
T ss_pred EEeecCCCCEEEE-EECCCeEEEEECCCCCcceEEE-CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECC
Confidence 899874 455555 555899999999854 555555 7899999999999999999999999999999974
No 32
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.2e-38 Score=252.05 Aligned_cols=216 Identities=16% Similarity=0.308 Sum_probs=180.0
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
|||+..+ .....+.+|...|++++|+|+|++||+|+.|++|+|||+.+++..... .... |.+.|.+++|+|+++.|
T Consensus 43 l~~~~~~--~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~-~~~~-~~~~v~~v~fs~dg~~l 118 (611)
T 1nr0_A 43 TVPVGSL--TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT-TIPV-FSGPVKDISWDSESKRI 118 (611)
T ss_dssp EEETTCS--SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE-EEEC-SSSCEEEEEECTTSCEE
T ss_pred EecCCCc--ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeE-eecc-cCCceEEEEECCCCCEE
Confidence 4666533 344556689999999999999999999999999999999765432111 1112 37899999999999999
Q ss_pred EEEecC----CeEEEEeCCCCceeeEEecccccceeEEEEECCCCC-EEEEeeCCCeEEEEEccCCeeEEEEecceeeee
Q 040370 81 VTASKD----GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR-FVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQL 155 (228)
Q Consensus 81 ~~~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 155 (228)
++++.+ +.|++||. ++....+..| ...|.+++|+|++. .|++++.|++|++||.++++....+.+ |...
T Consensus 119 ~~~~~~~~~~~~v~~wd~--~~~~~~l~gh--~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~--H~~~ 192 (611)
T 1nr0_A 119 AAVGEGRERFGHVFLFDT--GTSNGNLTGQ--ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE--HTKF 192 (611)
T ss_dssp EEEECCSSCSEEEEETTT--CCBCBCCCCC--SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC--CSSC
T ss_pred EEEECCCCceeEEEEeeC--CCCcceecCC--CCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc--ccCc
Confidence 998865 47888884 5555566655 77999999999987 599999999999999999888888876 7788
Q ss_pred eeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec------CCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 156 RFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS------NHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+.++.|+|++.++++++. |+.|++||+++++....+.. +|.+.|.+++|+|++++|++++.|++|++||+.
T Consensus 193 V~~v~fspdg~~las~s~-D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~ 269 (611)
T 1nr0_A 193 VHSVRYNPDGSLFASTGG-DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 269 (611)
T ss_dssp EEEEEECTTSSEEEEEET-TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEEECCCCCEEEEEEC-CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999998888666 89999999999988877633 799999999999999999999999999999964
No 33
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.2e-39 Score=248.34 Aligned_cols=210 Identities=15% Similarity=0.153 Sum_probs=173.0
Q ss_pred EEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCeEEEEecCCeEE
Q 040370 13 FRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGMYVTASKDGAIR 90 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~ 90 (228)
.....|...|+|++|+| ++++||+|+.||.|+|||+.+++....... .+| .+.|++++|+| ++++|++|+.||+|+
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~-~gH-~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG-IGA-GGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECC-CSS-SCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEc-cCC-CCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 34557899999999999 677999999999999999987764333322 233 88999999998 688999999999999
Q ss_pred EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370 91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS 170 (228)
Q Consensus 91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
+||++++........+.....+.+++|+|++++|++|+.||.|++||++. +.+..+.. |...+.++.|+|++..+++
T Consensus 191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~--h~~~v~~v~~~p~~~~~~~ 267 (435)
T 4e54_B 191 LQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRM--HKKKVTHVALNPCCDWFLA 267 (435)
T ss_dssp EEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBC--CSSCEEEEEECTTCSSEEE
T ss_pred EeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEec--ccceEEeeeecCCCceEEE
Confidence 99998765444443333355678999999999999999999999999864 55555655 6778999999999987777
Q ss_pred eeCCCCeEEEEEcCCcceeEEe--ecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 171 IDEPSNEIVIWDALTAEKVAKW--SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 171 ~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+++.|+.|++||+++.+....+ ..+|...|++++|+|++++|++++.||.|++||+.
T Consensus 268 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~ 326 (435)
T 4e54_B 268 TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 326 (435)
T ss_dssp EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESS
T ss_pred EecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECC
Confidence 7777999999999887654433 24799999999999999999999999999999964
No 34
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.3e-38 Score=247.25 Aligned_cols=202 Identities=20% Similarity=0.426 Sum_probs=176.7
Q ss_pred ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370 10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI 89 (228)
Q Consensus 10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 89 (228)
+....+.+|...|++++|+|++++|++++.|+.|++||.. ++....+. .| ...|++++|+|++++|++++.|+.|
T Consensus 376 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~---~~-~~~v~~~~~s~d~~~l~~~~~d~~v 450 (577)
T 2ymu_A 376 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLT---GH-SSSVWGVAFSPDDQTIASASDDKTV 450 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEE---CC-SSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEec---CC-CCCeEEEEECCCCCEEEEEcCCCEE
Confidence 4455666899999999999999999999999999999964 44444333 23 7899999999999999999999999
Q ss_pred EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEE
Q 040370 90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVL 169 (228)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (228)
++||. +++.+..+..+ ...|.+++|+|++++|++++.|+.|++||. +++.+..+.+ |...+.+++|+|++++++
T Consensus 451 ~~w~~-~~~~~~~~~~~--~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~--h~~~v~~l~~s~dg~~l~ 524 (577)
T 2ymu_A 451 KLWNR-NGQLLQTLTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG--HSSSVRGVAFSPDGQTIA 524 (577)
T ss_dssp EEEET-TSCEEEEEECC--SSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEEC--CSSCEEEEEECTTSSCEE
T ss_pred EEEEC-CCCEEEEEcCC--CCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeC--CCCCEEEEEEcCCCCEEE
Confidence 99996 56777777765 778999999999999999999999999995 6788888877 677889999999999998
Q ss_pred EeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 170 SIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 170 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
+++. |+.|++||. +++.+..+ .+|.+.|++++|+|++++|+|++.|+.|++||
T Consensus 525 s~~~-dg~v~lwd~-~~~~~~~~-~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 525 SASD-DKTVKLWNR-NGQLLQTL-TGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEET-TSEEEEECT-TSCEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEC-cCEEEEEeC-CCCEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 8665 899999995 67777777 79999999999999999999999999999997
No 35
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.2e-38 Score=232.93 Aligned_cols=209 Identities=14% Similarity=0.213 Sum_probs=168.0
Q ss_pred EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC--CCCeEEEEecCCeEEEE
Q 040370 15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS--TGGMYVTASKDGAIRLW 92 (228)
Q Consensus 15 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~iw 92 (228)
+.+|...|++++|+|++++|++|+.||.|++||+.++............|...|.+++|+| ++++|++|+.||.|++|
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 3589999999999999999999999999999999876422111111122388999999999 59999999999999999
Q ss_pred eCCCC---------ceeeEEecccccceeEEEEECCC--CCEEEEeeCCCeEEEEEccCCeeEE----------------
Q 040370 93 DGVSA---------NCVRSIVGAHGTAEATSANFTKD--QRFVLSCGKDSTVKLWEVSSGRLVK---------------- 145 (228)
Q Consensus 93 d~~~~---------~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~---------------- 145 (228)
|++++ +....+..+ ...|.+++|+|+ ++++++++.|+.|++||+++++.+.
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCTLNDS--KGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EECTTSCTTSSCSEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred ecCCCcccccccCcceeeeeccc--CCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 99886 345555544 789999999999 9999999999999999987654211
Q ss_pred ------------------------------------------EEecceeeeeeeEEEECCCC----cEEEEeeCCCCeEE
Q 040370 146 ------------------------------------------QYLGATHTQLRFQAVFNDTE----EFVLSIDEPSNEIV 179 (228)
Q Consensus 146 ------------------------------------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~i~ 179 (228)
......|...+.++.|+|++ .++++++ .||.|+
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~-~dg~i~ 243 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC-KDGRIR 243 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE-TTSCEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc-CCCeEE
Confidence 11112256678899999998 5666654 589999
Q ss_pred EEEcCCc----------------------------------------------ceeEEeecCCCCCcEEEEeCCCCcEEE
Q 040370 180 IWDALTA----------------------------------------------EKVAKWSSNHIGAPRWIEHSPAEAAFI 213 (228)
Q Consensus 180 i~d~~~~----------------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~ 213 (228)
+||++++ +.+..+ .+|...|++++|+|++++|+
T Consensus 244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~ 322 (351)
T 3f3f_A 244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH-DDHNGEVWSVSWNLTGTILS 322 (351)
T ss_dssp EEEEEECC---------------------------------------CCSEEEEEEEEE-CTTSSCEEEEEECSSSCCEE
T ss_pred EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE-ecccccEEEEEEcCCCCEEE
Confidence 9999875 334444 68999999999999999999
Q ss_pred EecCCCCEEEeeec
Q 040370 214 TCGTDRSVRFWKEI 227 (228)
Q Consensus 214 s~~~dg~i~vwd~~ 227 (228)
+++.||.|++||+.
T Consensus 323 s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 323 SAGDDGKVRLWKAT 336 (351)
T ss_dssp EEETTSCEEEEEEC
T ss_pred EecCCCcEEEEecC
Confidence 99999999999975
No 36
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=8e-38 Score=228.63 Aligned_cols=223 Identities=17% Similarity=0.269 Sum_probs=181.8
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccce-------------------
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE------------------- 61 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~------------------- 61 (228)
|||..+.+..+.++..+|...|++++|+|++++|++|+.||.|++|++++++.+.....+.
T Consensus 49 iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~ 128 (318)
T 4ggc_A 49 LWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRS 128 (318)
T ss_dssp EEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETT
T ss_pred EEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecC
Confidence 5888877766777777889999999999999999999999999999999887654432110
Q ss_pred ------------------eeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeE--EecccccceeEEEEECCCC
Q 040370 62 ------------------ISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRS--IVGAHGTAEATSANFTKDQ 121 (228)
Q Consensus 62 ------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~~~~i~~~~~~~~~ 121 (228)
..|...+..+.++++++++++++.||.|++||+++++.... .....+...+.++.++|++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 208 (318)
T 4ggc_A 129 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 208 (318)
T ss_dssp SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTS
T ss_pred CceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCC
Confidence 12366788999999999999999999999999988753211 1112226789999999966
Q ss_pred CE---EEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe-eCCCCeEEEEEcCCcceeEEeecCCC
Q 040370 122 RF---VLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI-DEPSNEIVIWDALTAEKVAKWSSNHI 197 (228)
Q Consensus 122 ~~---l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~ 197 (228)
.. +++++.++.|++||.+......... +...+..+.+.|.+..++++ +..|+.|++||+++++.+..+ .+|.
T Consensus 209 ~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l-~gH~ 284 (318)
T 4ggc_A 209 SNVLATGGGTSDRHIRIWNVCSGACLSAVD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL-KGHT 284 (318)
T ss_dssp TTEEEEEECTTTCEEEEEETTTCCEEEEEE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE-CCCS
T ss_pred CcEEEEEecCCCCEEEEEeccccccccccc---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE-cCCC
Confidence 53 3467789999999999877766554 45567788888988887765 456899999999999999988 7999
Q ss_pred CCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 198 GAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 198 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+.|++++|+|++++|+|||.||+|+|||+.
T Consensus 285 ~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 285 SRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp SCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred CCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 999999999999999999999999999974
No 37
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.6e-37 Score=227.41 Aligned_cols=215 Identities=12% Similarity=0.146 Sum_probs=187.0
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
+||+..........+..|...|.+++|+|++++|++++.|+.|++||+++++....+.. | ...|.+++|+|+++++
T Consensus 123 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~---~-~~~i~~~~~~~~~~~l 198 (337)
T 1gxr_A 123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG---H-TDGASCIDISNDGTKL 198 (337)
T ss_dssp EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---C-SSCEEEEEECTTSSEE
T ss_pred EEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec---c-cCceEEEEECCCCCEE
Confidence 47777666556667778999999999999999999999999999999999887666543 2 7889999999999999
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV 160 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
++++.||.|++||+++++....+.. ...+.+++|+|+++++++++.|+.|++||+++++.. .+.. +...+..+.
T Consensus 199 ~~~~~dg~i~~~d~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~--~~~~v~~~~ 272 (337)
T 1gxr_A 199 WTGGLDNTVRSWDLREGRQLQQHDF---TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHL--HESCVLSLK 272 (337)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEEC---SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECC--CSSCEEEEE
T ss_pred EEEecCCcEEEEECCCCceEeeecC---CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcC--CccceeEEE
Confidence 9999999999999999988877653 668999999999999999999999999999987654 3333 677899999
Q ss_pred ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeecC
Q 040370 161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL 228 (228)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~l 228 (228)
|+|+++++++++. |+.|++||+++++..... .|...+.+++|+|++++|++++.||.|++||+.+
T Consensus 273 ~~~~~~~l~~~~~-dg~i~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 337 (337)
T 1gxr_A 273 FAYCGKWFVSTGK-DNLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY 337 (337)
T ss_dssp ECTTSSEEEEEET-TSEEEEEETTTCCEEEEE--ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEEC
T ss_pred ECCCCCEEEEecC-CCcEEEEECCCCeEEEEe--cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEeC
Confidence 9999999888766 799999999999887554 6889999999999999999999999999999874
No 38
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.9e-38 Score=249.83 Aligned_cols=218 Identities=15% Similarity=0.200 Sum_probs=181.8
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCC----CeEEEEEcccceEEeeeccceeeeccceeeEEeCCC
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDH----PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST 76 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 76 (228)
|||+..........+.+|..+|.+++|+|++++|++++.+ +.|++||. ++....+ .+| ...|.+++|+|+
T Consensus 85 lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l---~gh-~~~v~~v~f~p~ 158 (611)
T 1nr0_A 85 IWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNL---TGQ-ARAMNSVDFKPS 158 (611)
T ss_dssp EEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCC---CCC-SSCEEEEEECSS
T ss_pred EeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCccee---cCC-CCCceEEEECCC
Confidence 5888655444555667899999999999999999988765 46777774 3332222 233 889999999999
Q ss_pred CC-eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecc-----
Q 040370 77 GG-MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA----- 150 (228)
Q Consensus 77 ~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~----- 150 (228)
+. .|++|+.|++|++||.++++....+..| ...|.+++|+|++++|++++.|++|++||+.+++....+...
T Consensus 159 ~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H--~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~ 236 (611)
T 1nr0_A 159 RPFRIISGSDDNTVAIFEGPPFKFKSTFGEH--TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV 236 (611)
T ss_dssp SSCEEEEEETTSCEEEEETTTBEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSC
T ss_pred CCeEEEEEeCCCeEEEEECCCCeEeeeeccc--cCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccccccc
Confidence 87 5999999999999999988888888776 779999999999999999999999999999999887776421
Q ss_pred eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe--------------------------------------
Q 040370 151 THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW-------------------------------------- 192 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-------------------------------------- 192 (228)
.|...+..+.|+|++.++++++. |+.|++||+++++....+
T Consensus 237 ~h~~~V~~v~~spdg~~l~s~s~-D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~ 315 (611)
T 1nr0_A 237 AHSGSVFGLTWSPDGTKIASASA-DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGS 315 (611)
T ss_dssp SSSSCEEEEEECTTSSEEEEEET-TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTE
T ss_pred ccCCCEEEEEECCCCCEEEEEeC-CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC
Confidence 37788999999999999888766 899999999887654332
Q ss_pred ----ecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 193 ----SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 193 ----~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
..+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 316 ~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 316 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS 354 (611)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred cceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Confidence 24789999999999999999999999999999963
No 39
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-39 Score=250.35 Aligned_cols=221 Identities=10% Similarity=0.036 Sum_probs=175.2
Q ss_pred CCcCCccccce--eEEEeecCcceEEEEEeCC------CCEEEEecCCCeEEEEEcccceEEe----ee----ccceeee
Q 040370 1 FFDFSKATAKR--AFRVIQDTHNVRSVSFHPS------GDFLLAGTDHPIAHLYDVNTFQCYL----SA----NVPEISV 64 (228)
Q Consensus 1 iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~vw~~~~~~~~~----~~----~~~~~~~ 64 (228)
|||+....... ...+..|.+.|.+++|+|+ +.+||+++.||+|++||+..+.... .. ..... |
T Consensus 187 iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~-h 265 (524)
T 2j04_B 187 IFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSL-A 265 (524)
T ss_dssp EEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECC-T
T ss_pred EEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEc-C
Confidence 57776543322 2334567889999999996 5799999999999999998764210 00 01112 3
Q ss_pred ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce-eeEEecccccceeEEE--EECCCC-CEEEEeeCCCeEEEEEccC
Q 040370 65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC-VRSIVGAHGTAEATSA--NFTKDQ-RFVLSCGKDSTVKLWEVSS 140 (228)
Q Consensus 65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~d~~i~~wd~~~ 140 (228)
...|++++|+|++ .|++|+.||+|++||++++.. ...+..| ...|.++ .|+|++ .+|++++.|++|++||+++
T Consensus 266 ~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H--~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~ 342 (524)
T 2j04_B 266 DSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVH--DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD 342 (524)
T ss_dssp TTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECS--SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG
T ss_pred CCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecc--cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC
Confidence 7899999999864 899999999999999997743 4456555 7789998 578887 8999999999999999999
Q ss_pred CeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCC
Q 040370 141 GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRS 220 (228)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 220 (228)
++.+..+.++.....+.+++|+|++..+++++. |+.|++||++++..+..+ .+|.+.|++++|+|++++|++|+.||+
T Consensus 343 ~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~-d~tv~lwd~~~~~~~~~l-~gH~~~V~sva~Sp~g~~l~Sgs~Dgt 420 (524)
T 2j04_B 343 IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDG-ASSLRAVPSRAAFAVHPL-VSRETTITAIGVSRLHPMVLAGSADGS 420 (524)
T ss_dssp HHHHCEEEEECSCCSCCCEEEETTTTEEEEECS-SSEEEEEETTCTTCCEEE-EECSSCEEEEECCSSCCBCEEEETTTE
T ss_pred CCcccccccccccCcccceEeCCCcCeEEEeCC-CCcEEEEECcccccceee-ecCCCceEEEEeCCCCCeEEEEECCCE
Confidence 887766655322234678999999988777655 799999999999887777 579999999999999999999999999
Q ss_pred EEEeeec
Q 040370 221 VRFWKEI 227 (228)
Q Consensus 221 i~vwd~~ 227 (228)
|++||+.
T Consensus 421 v~lwd~~ 427 (524)
T 2j04_B 421 LIITNAA 427 (524)
T ss_dssp EECCBSC
T ss_pred EEEEech
Confidence 9999863
No 40
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=7.9e-39 Score=234.19 Aligned_cols=220 Identities=16% Similarity=0.187 Sum_probs=171.1
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeC--CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC--
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHP--SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-- 76 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 76 (228)
|||+..........+.+|..+|.+++|+| ++++|++|+.|++|++||+++++..... ....| ...|.+++|+|+
T Consensus 39 lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~-~~~~h-~~~V~~v~~~p~~~ 116 (316)
T 3bg1_A 39 IFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSH-EHAGH-DSSVNSVCWAPHDY 116 (316)
T ss_dssp EEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEE-EECCC-SSCCCEEEECCTTT
T ss_pred EEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEE-EccCC-CCceEEEEECCCCC
Confidence 57776544344556778999999999986 4899999999999999999886421111 11123 789999999997
Q ss_pred CCeEEEEecCCeEEEEeCCCCcee---eEEecccccceeEEEEECCC-----------------CCEEEEeeCCCeEEEE
Q 040370 77 GGMYVTASKDGAIRLWDGVSANCV---RSIVGAHGTAEATSANFTKD-----------------QRFVLSCGKDSTVKLW 136 (228)
Q Consensus 77 ~~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~i~~~~~~~~-----------------~~~l~~~~~d~~i~~w 136 (228)
+.+|++|+.|+.|++||++.+... ..+.. +...+.+++|+|+ +++|++|+.|+.|++|
T Consensus 117 g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lW 194 (316)
T 3bg1_A 117 GLILACGSSDGAISLLTYTGEGQWEVKKINNA--HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW 194 (316)
T ss_dssp CSCEEEECSSSCEEEEEECSSSCEEECCBTTS--SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEE
T ss_pred CcEEEEEcCCCCEEEEecCCCCCcceeeeecc--ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEE
Confidence 789999999999999999876432 22222 3678899999997 4689999999999999
Q ss_pred EccCC---eeEEEEecceeeeeeeEEEECCCC----cEEEEeeCCCCeEEEEEcCCc---ceeEEeecCCCCCcEEEEeC
Q 040370 137 EVSSG---RLVKQYLGATHTQLRFQAVFNDTE----EFVLSIDEPSNEIVIWDALTA---EKVAKWSSNHIGAPRWIEHS 206 (228)
Q Consensus 137 d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~ 206 (228)
|++.. +....+.+ |...+.++.|+|++ .++++ ++.|+.|++||+++. .........|...|.+++|+
T Consensus 195 d~~~~~~~~~~~~l~~--h~~~V~~v~~sp~~~~~~~~las-~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s 271 (316)
T 3bg1_A 195 KEEEDGQWKEEQKLEA--HSDWVRDVAWAPSIGLPTSTIAS-CSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWS 271 (316)
T ss_dssp EECTTSCEEEEECCBC--CSSCEEEEECCCCSSCSCCEEEE-EETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEEC
T ss_pred EeCCCCccceeeeccc--CCCceEEEEecCCCCCCCceEEE-EcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEc
Confidence 99754 34555554 67789999999986 55555 555899999998763 21222225688999999999
Q ss_pred CCCcEEEEecCCCCEEEeeec
Q 040370 207 PAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 207 ~~~~~l~s~~~dg~i~vwd~~ 227 (228)
|++++|++++.||.|++|+..
T Consensus 272 p~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 272 ITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TTTCCEEEEESSSCEEEEEEC
T ss_pred CCCCEEEEEcCCCeEEEEEEC
Confidence 999999999999999999964
No 41
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.9e-37 Score=229.37 Aligned_cols=216 Identities=14% Similarity=0.246 Sum_probs=171.7
Q ss_pred CCcCCccc-----cceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC
Q 040370 1 FFDFSKAT-----AKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS 75 (228)
Q Consensus 1 iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 75 (228)
|||+.... ......+.+|...|.+++|+|++.++++|+.|++|++||+++++....+.. | ...|.+++|+|
T Consensus 53 iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~---h-~~~v~~v~~sp 128 (343)
T 2xzm_R 53 IWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVG---H-QSEVYSVAFSP 128 (343)
T ss_dssp EEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEEC---C-CSCEEEEEECS
T ss_pred EEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcC---C-CCcEEEEEECC
Confidence 47765432 233445668999999999999999999999999999999999887665542 3 78999999999
Q ss_pred CCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCC----------CEEEEeeCCCeEEEEEccCCeeEE
Q 040370 76 TGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQ----------RFVLSCGKDSTVKLWEVSSGRLVK 145 (228)
Q Consensus 76 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~l~~~~~d~~i~~wd~~~~~~~~ 145 (228)
++++|++++.|+.|++||+.............+...+.+++|+|++ .++++++.|+.|++||. ..+...
T Consensus 129 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~ 207 (343)
T 2xzm_R 129 DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRY 207 (343)
T ss_dssp STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEE
T ss_pred CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeE
Confidence 9999999999999999999743322222122336789999999986 78999999999999994 456666
Q ss_pred EEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc-eeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370 146 QYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE-KVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224 (228)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 224 (228)
.+.. |...+.++.|+|++.++++++. |+.|++||+++.. ....+ .+...|.+++|+|++.++++ +.|+.|++|
T Consensus 208 ~~~~--h~~~v~~~~~s~~g~~l~sgs~-dg~v~iwd~~~~~~~~~~~--~~~~~v~~v~~sp~~~~la~-~~d~~v~iw 281 (343)
T 2xzm_R 208 TFKA--HESNVNHLSISPNGKYIATGGK-DKKLLIWDILNLTYPQREF--DAGSTINQIAFNPKLQWVAV-GTDQGVKIF 281 (343)
T ss_dssp EEEC--CSSCEEEEEECTTSSEEEEEET-TCEEEEEESSCCSSCSEEE--ECSSCEEEEEECSSSCEEEE-EESSCEEEE
T ss_pred EEcC--ccccceEEEECCCCCEEEEEcC-CCeEEEEECCCCcccceee--cCCCcEEEEEECCCCCEEEE-ECCCCEEEE
Confidence 6665 6778899999999999988766 8999999995443 33333 34567999999999987765 468889999
Q ss_pred eec
Q 040370 225 KEI 227 (228)
Q Consensus 225 d~~ 227 (228)
|+.
T Consensus 282 ~~~ 284 (343)
T 2xzm_R 282 NLM 284 (343)
T ss_dssp ESS
T ss_pred EeC
Confidence 963
No 42
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.8e-38 Score=230.59 Aligned_cols=206 Identities=14% Similarity=0.181 Sum_probs=160.4
Q ss_pred EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC--CCCeEEEEecCCeEEEE
Q 040370 15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS--TGGMYVTASKDGAIRLW 92 (228)
Q Consensus 15 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~iw 92 (228)
+.+|...|++++|+|++++||+|+.|++|++||+.+++.... ....+| ...|.+++|+| ++++|++|+.|++|++|
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~-~~l~gH-~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILI-ADLRGH-EGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEE-EEEECC-SSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEE-EEEcCC-CccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 347999999999999999999999999999999988753221 112233 88999999986 48899999999999999
Q ss_pred eCCCCc--eeeEEecccccceeEEEEECCC--CCEEEEeeCCCeEEEEEccCCeeEE-EEecceeeeeeeEEEECCCC--
Q 040370 93 DGVSAN--CVRSIVGAHGTAEATSANFTKD--QRFVLSCGKDSTVKLWEVSSGRLVK-QYLGATHTQLRFQAVFNDTE-- 165 (228)
Q Consensus 93 d~~~~~--~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-- 165 (228)
|+++++ ....+..| ...|.+++|+|+ +.+|++|+.|+.|++||++.+.... ......|...+..+.|+|+.
T Consensus 87 d~~~~~~~~~~~~~~h--~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 87 REENGTWEKSHEHAGH--DSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp CCSSSCCCEEEEECCC--SSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred ECCCCcceEEEEccCC--CCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 999874 34444444 778999999997 7899999999999999998753221 11122356677788888873
Q ss_pred ---------------cEEEEeeCCCCeEEEEEcCCcc---eeEEeecCCCCCcEEEEeCCCC----cEEEEecCCCCEEE
Q 040370 166 ---------------EFVLSIDEPSNEIVIWDALTAE---KVAKWSSNHIGAPRWIEHSPAE----AAFITCGTDRSVRF 223 (228)
Q Consensus 166 ---------------~~~~~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~----~~l~s~~~dg~i~v 223 (228)
.+++ +++.|+.|++||++... ....+ .+|...|.+++|+|++ .+|++++.||+|++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~-sgs~D~~v~lWd~~~~~~~~~~~~l-~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFA-SGGCDNLIKLWKEEEDGQWKEEQKL-EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp ------CCSCCCCCCCBEE-CCBTTSBCCEEEECTTSCEEEEECC-BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred ccccccccccCccccceEE-EecCCCeEEEEEeCCCCccceeeec-ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence 3455 45668999999997552 34444 6899999999999986 78999999999999
Q ss_pred eee
Q 040370 224 WKE 226 (228)
Q Consensus 224 wd~ 226 (228)
|++
T Consensus 243 w~~ 245 (316)
T 3bg1_A 243 WTC 245 (316)
T ss_dssp EEC
T ss_pred EEc
Confidence 986
No 43
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-37 Score=230.02 Aligned_cols=222 Identities=17% Similarity=0.256 Sum_probs=178.4
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCC--CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC--
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPS--GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-- 76 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 76 (228)
|||+.....+....+.+|...|++++|+|+ +++|++|+.||.|++||+.+++....... ..| ...|.+++|+|+
T Consensus 37 iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~-~~~v~~~~~~~~~~ 114 (379)
T 3jrp_A 37 IFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVH-SASVNSVQWAPHEY 114 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCC-SSCEEEEEECCGGG
T ss_pred EEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeee-cCC-CcceEEEEeCCCCC
Confidence 577765555666677789999999999986 99999999999999999999863222211 122 788999999999
Q ss_pred CCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC-------------CCCEEEEeeCCCeEEEEEccCCee
Q 040370 77 GGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-------------DQRFVLSCGKDSTVKLWEVSSGRL 143 (228)
Q Consensus 77 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~~~d~~i~~wd~~~~~~ 143 (228)
++++++++.||.|++||++++..........+...|.+++|+| ++.++++++.|+.|++||+++++.
T Consensus 115 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 194 (379)
T 3jrp_A 115 GPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 194 (379)
T ss_dssp CSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT
T ss_pred CCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc
Confidence 9999999999999999999875443333333378999999999 699999999999999999987653
Q ss_pred ----EEEEecceeeeeeeEEEECCC---CcEEEEeeCCCCeEEEEEcCCccee---EE-eecCCCCCcEEEEeCCCCcEE
Q 040370 144 ----VKQYLGATHTQLRFQAVFNDT---EEFVLSIDEPSNEIVIWDALTAEKV---AK-WSSNHIGAPRWIEHSPAEAAF 212 (228)
Q Consensus 144 ----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~i~i~d~~~~~~~---~~-~~~~~~~~v~~~~~~~~~~~l 212 (228)
...+.. |...+.++.|+|+ +.++++++. ||.|++||++++... .. ....|...|.+++|+|++++|
T Consensus 195 ~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 271 (379)
T 3jrp_A 195 TYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQ-DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL 271 (379)
T ss_dssp EEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEET-TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCE
T ss_pred ceeeEEEEec--ccCcEeEEEECCCCCCCCeEEEEeC-CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEE
Confidence 233433 6778999999999 777777655 899999999987421 11 113488899999999999999
Q ss_pred EEecCCCCEEEeeec
Q 040370 213 ITCGTDRSVRFWKEI 227 (228)
Q Consensus 213 ~s~~~dg~i~vwd~~ 227 (228)
++++.||.|++|++.
T Consensus 272 ~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 272 ALSGGDNKVTLWKEN 286 (379)
T ss_dssp EEEESSSSEEEEEEE
T ss_pred EEecCCCcEEEEeCC
Confidence 999999999999974
No 44
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-37 Score=229.24 Aligned_cols=207 Identities=14% Similarity=0.205 Sum_probs=172.0
Q ss_pred EEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccc--eEEeeeccceeeeccceeeEEeCCC--CCeEEEEecCCe
Q 040370 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTF--QCYLSANVPEISVNGAINQVRYSST--GGMYVTASKDGA 88 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~ 88 (228)
..+.+|...|++++|+|++++|++|+.||.|++|++... +....+. .| ...|++++|+|+ +++|++|+.||.
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~h-~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT---GH-EGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC---CC-SSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec---CC-CCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 345689999999999999999999999999999999843 3333332 23 789999999987 899999999999
Q ss_pred EEEEeCCCCc--eeeEEecccccceeEEEEECCC--CCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECC-
Q 040370 89 IRLWDGVSAN--CVRSIVGAHGTAEATSANFTKD--QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFND- 163 (228)
Q Consensus 89 v~iwd~~~~~--~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~- 163 (228)
|++||+++++ ....+..+ ...|.+++|+|+ +.++++++.|+.|++||++++..........+...+.++.|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 158 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVH--SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 158 (379)
T ss_dssp EEEEEEETTEEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred EEEEEcCCCceeEeeeecCC--CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence 9999999887 44444443 789999999999 9999999999999999999875433333333677889999999
Q ss_pred ------------CCcEEEEeeCCCCeEEEEEcCCccee----EEeecCCCCCcEEEEeCCC---CcEEEEecCCCCEEEe
Q 040370 164 ------------TEEFVLSIDEPSNEIVIWDALTAEKV----AKWSSNHIGAPRWIEHSPA---EAAFITCGTDRSVRFW 224 (228)
Q Consensus 164 ------------~~~~~~~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~~v~~~~~~~~---~~~l~s~~~dg~i~vw 224 (228)
++.++++++. |+.|++||++++... ..+ .+|...|.+++|+|+ +.+|++++.||.|++|
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 159 TIEEDGEHNGTKESRKFVTGGA-DNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp C----------CTTCEEEEEET-TSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred cccccccccCCCCCCEEEEEeC-CCeEEEEEecCCCcceeeEEEE-ecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence 5777777655 899999999876532 333 689999999999999 8999999999999999
Q ss_pred eec
Q 040370 225 KEI 227 (228)
Q Consensus 225 d~~ 227 (228)
|+.
T Consensus 237 d~~ 239 (379)
T 3jrp_A 237 TQD 239 (379)
T ss_dssp EES
T ss_pred eCC
Confidence 974
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.5e-36 Score=222.21 Aligned_cols=217 Identities=21% Similarity=0.327 Sum_probs=183.0
Q ss_pred CCcCCccccceeE-EE--eecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCC
Q 040370 1 FFDFSKATAKRAF-RV--IQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG 77 (228)
Q Consensus 1 iwd~~~~~~~~~~-~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 77 (228)
|||+......... .+ .+|...|.+++|+|++++|++++.|+.|++||+.+++....... ..+...|.+++|+|++
T Consensus 76 iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~~~i~~~~~~~~~ 153 (337)
T 1gxr_A 76 VWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL--TSSAPACYALAISPDS 153 (337)
T ss_dssp EEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEE--ECSSSCEEEEEECTTS
T ss_pred EEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeec--ccCCCceEEEEECCCC
Confidence 5777765433222 22 26899999999999999999999999999999998763222211 1227789999999999
Q ss_pred CeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeee
Q 040370 78 GMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRF 157 (228)
Q Consensus 78 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 157 (228)
+++++++.||.|++||+++++....+..+ ...+.+++|+|+++++++++.|+.|++||+++++.+..+. +...+.
T Consensus 154 ~~l~~~~~dg~v~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~v~ 228 (337)
T 1gxr_A 154 KVCFSCCSDGNIAVWDLHNQTLVRQFQGH--TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD---FTSQIF 228 (337)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---CSSCEE
T ss_pred CEEEEEeCCCcEEEEeCCCCceeeeeecc--cCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec---CCCceE
Confidence 99999999999999999999988888765 6789999999999999999999999999999998877765 456788
Q ss_pred EEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.+.|+|++.++++++. |+.|++||+++++... + ..|...|.+++|+|++++|++++.||.|++||+.
T Consensus 229 ~~~~s~~~~~l~~~~~-~~~i~~~~~~~~~~~~-~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 229 SLGYCPTGEWLAVGME-SSNVEVLHVNKPDKYQ-L-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp EEEECTTSSEEEEEET-TSCEEEEETTSSCEEE-E-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EEEECCCCCEEEEEcC-CCcEEEEECCCCCeEE-E-cCCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 9999999999988766 7999999999887643 3 5899999999999999999999999999999964
No 46
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.3e-37 Score=232.00 Aligned_cols=225 Identities=15% Similarity=0.215 Sum_probs=178.9
Q ss_pred CCcCCcccc--ceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEe----eeccceeeeccceeeEEe
Q 040370 1 FFDFSKATA--KRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYL----SANVPEISVNGAINQVRY 73 (228)
Q Consensus 1 iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~----~~~~~~~~~~~~i~~~~~ 73 (228)
|||+..... .....+.+|...|++++|+| ++++|++|+.||.|++||+.++.... ....... |...|.+++|
T Consensus 61 v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~ 139 (402)
T 2aq5_A 61 VLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG-HTKRVGIVAW 139 (402)
T ss_dssp EEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC-CSSCEEEEEE
T ss_pred EEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecC-CCCeEEEEEE
Confidence 466643221 22334557999999999999 99999999999999999999874211 1111122 3889999999
Q ss_pred CCCC-CeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEE-ecce
Q 040370 74 SSTG-GMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQY-LGAT 151 (228)
Q Consensus 74 ~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~ 151 (228)
+|++ ++|++++.||.|++||+++++....+....+...|.+++|+|++++|++++.|+.|++||+++++.+..+ ..+
T Consensus 140 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~- 218 (402)
T 2aq5_A 140 HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPH- 218 (402)
T ss_dssp CSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSS-
T ss_pred CcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCC-
Confidence 9998 6999999999999999999998888831222779999999999999999999999999999999988887 342
Q ss_pred eeeeeeEEEECCCCcEEEEee--CCCCeEEEEEcCCcce-eEEeecCCCCCcEEEEeCCCCcEEE-EecCCCCEEEeeec
Q 040370 152 HTQLRFQAVFNDTEEFVLSID--EPSNEIVIWDALTAEK-VAKWSSNHIGAPRWIEHSPAEAAFI-TCGTDRSVRFWKEI 227 (228)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~--~~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~ 227 (228)
....+..+.|+|++.+++++. +.|+.|++||+++++. .......|...+.+++|+|++++|+ +++.||.|++||+.
T Consensus 219 ~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~ 298 (402)
T 2aq5_A 219 EGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT 298 (402)
T ss_dssp CSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEEC
T ss_pred CCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEec
Confidence 233478899999988877762 4589999999998765 3333346788899999999999886 55579999999974
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.2e-37 Score=236.08 Aligned_cols=201 Identities=16% Similarity=0.225 Sum_probs=174.2
Q ss_pred cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce
Q 040370 20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC 99 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 99 (228)
..+....|+|++++|++|+.||.|++||+.+++....+.. | ...|++++|+|++++|++|+.||.|++||+++++.
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---h-~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 173 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA---H-VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 173 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS---S-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc---c-cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC
Confidence 4455557899999999999999999999998877654432 2 78999999999999999999999999999999999
Q ss_pred eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce-e---------------------eeeee
Q 040370 100 VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT-H---------------------TQLRF 157 (228)
Q Consensus 100 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~---------------------~~~~~ 157 (228)
+..+..| ...|.+++|+|++++|++++.|+.|++||+++++.+..+..+. + ...+.
T Consensus 174 ~~~~~~h--~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~ 251 (420)
T 3vl1_A 174 PRTLIGH--RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKN 251 (420)
T ss_dssp CEEEECC--SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCC
T ss_pred ceEEcCC--CCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCccc
Confidence 8888766 7799999999999999999999999999999999888876422 1 13344
Q ss_pred EEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc-EEEEecCCCCEEEeeec
Q 040370 158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA-AFITCGTDRSVRFWKEI 227 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~ 227 (228)
.+.|+|++.++++++. ||.|++||+++++....+...|...|.+++|+|++. +|++++.||.|++||+.
T Consensus 252 ~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~ 321 (420)
T 3vl1_A 252 NLEFGTYGKYVIAGHV-SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR 321 (420)
T ss_dssp TTCSSCTTEEEEEEET-TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred ceEEcCCCCEEEEEcC-CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC
Confidence 4566888988888666 799999999999988888777999999999999998 99999999999999974
No 48
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1e-36 Score=227.22 Aligned_cols=219 Identities=11% Similarity=0.077 Sum_probs=184.2
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
|||+..........+.+|...|.+++|+|++++|++++.|+.|++||+++++........ . |...|.+++|+|++++|
T Consensus 34 i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l 111 (372)
T 1k8k_C 34 IYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL-R-INRAARCVRWAPNEKKF 111 (372)
T ss_dssp EEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECC-C-CSSCEEEEEECTTSSEE
T ss_pred EEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEee-c-CCCceeEEEECCCCCEE
Confidence 466665543456666789999999999999999999999999999999988754443321 2 27889999999999999
Q ss_pred EEEecCCeEEEEeCCCCce---eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEcc------------------
Q 040370 81 VTASKDGAIRLWDGVSANC---VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVS------------------ 139 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~------------------ 139 (228)
++++.||.|++||++.++. ...+... +...|.+++|+|++++|++++.|+.|++||++
T Consensus 112 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 190 (372)
T 1k8k_C 112 AVGSGSRVISICYFEQENDWWVCKHIKKP-IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 190 (372)
T ss_dssp EEEETTSSEEEEEEETTTTEEEEEEECTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCC
T ss_pred EEEeCCCEEEEEEecCCCcceeeeeeecc-cCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccc
Confidence 9999999999999988763 3333332 37789999999999999999999999999954
Q ss_pred CCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCC
Q 040370 140 SGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDR 219 (228)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 219 (228)
.++.+..+.. +...+.++.|+|++.++++++. |+.|++||+++++.+..+ ..|..+|.+++|+|++.+|+++ .|+
T Consensus 191 ~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~d~ 265 (372)
T 1k8k_C 191 FGELMFESSS--SCGWVHGVCFSANGSRVAWVSH-DSTVCLADADKKMAVATL-ASETLPLLAVTFITESSLVAAG-HDC 265 (372)
T ss_dssp TTCEEEECCC--CSSCEEEEEECSSSSEEEEEET-TTEEEEEEGGGTTEEEEE-ECSSCCEEEEEEEETTEEEEEE-TTS
T ss_pred hhhheEecCC--CCCeEEEEEECCCCCEEEEEeC-CCEEEEEECCCCceeEEE-ccCCCCeEEEEEecCCCEEEEE-eCC
Confidence 5666666654 6778899999999998888765 899999999999988888 6888999999999999988887 899
Q ss_pred CEEEeeec
Q 040370 220 SVRFWKEI 227 (228)
Q Consensus 220 ~i~vwd~~ 227 (228)
.|++|++.
T Consensus 266 ~i~i~~~~ 273 (372)
T 1k8k_C 266 FPVLFTYD 273 (372)
T ss_dssp SCEEEEEE
T ss_pred eEEEEEcc
Confidence 99999974
No 49
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-36 Score=224.82 Aligned_cols=212 Identities=16% Similarity=0.240 Sum_probs=182.2
Q ss_pred cccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC
Q 040370 7 ATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD 86 (228)
Q Consensus 7 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 86 (228)
+...+...+.+|...|++++|+|++++|++|+.||.|++||+.+++....+.. | ...|.+++|+|++++|++++.|
T Consensus 20 G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---h-~~~v~~~~~~~~~~~l~s~~~d 95 (369)
T 3zwl_B 20 GSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDG---H-TGTIWSIDVDCFTKYCVTGSAD 95 (369)
T ss_dssp CCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECC---C-SSCEEEEEECTTSSEEEEEETT
T ss_pred ccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhh---c-CCcEEEEEEcCCCCEEEEEeCC
Confidence 34456778889999999999999999999999999999999999887766543 2 7889999999999999999999
Q ss_pred CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC-----CeEEEEEccCCee-----------EEEEecc
Q 040370 87 GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-----STVKLWEVSSGRL-----------VKQYLGA 150 (228)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~-----------~~~~~~~ 150 (228)
|.|++||+++++....+.. ...+.+++|+|+++++++++.+ +.|++||++.... ...+..+
T Consensus 96 g~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
T 3zwl_B 96 YSIKLWDVSNGQCVATWKS---PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH 172 (369)
T ss_dssp TEEEEEETTTCCEEEEEEC---SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred CeEEEEECCCCcEEEEeec---CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence 9999999999998888872 6789999999999999999999 9999999987542 2223332
Q ss_pred eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC-cceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 151 THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT-AEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.....+..+.|+|++.++++++. |+.|++||+++ .+....+ ..|...|.+++|+|++++|++++.||.|++||+.
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 173 EGLDAATVAGWSTKGKYIIAGHK-DGKISKYDVSNNYEYVDSI-DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS 248 (369)
T ss_dssp TTCCCEEEEEECGGGCEEEEEET-TSEEEEEETTTTTEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cCccceeEEEEcCCCCEEEEEcC-CCEEEEEECCCCcEeEEEE-ecCCCceeEEEECCCCCEEEEecCCceEEEEECC
Confidence 22237889999999999888666 79999999998 5555555 7899999999999999999999999999999964
No 50
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=8e-37 Score=244.91 Aligned_cols=217 Identities=18% Similarity=0.286 Sum_probs=179.3
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCC--C
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG--G 78 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~ 78 (228)
|||+... .....+.+|...|.+++|+|++++|++|+.|++|++||...............| ...|.+++|+|++ .
T Consensus 456 vwd~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 456 LWDLAAG--VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGH-RDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEETTTT--EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSC-SSCEEEEEECSCSSSC
T ss_pred EEECCCC--cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCC-CCcEEEEEEeCCCCcc
Confidence 5777643 345566789999999999999999999999999999998765443333322333 7889999999986 5
Q ss_pred eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeE
Q 040370 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQ 158 (228)
Q Consensus 79 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 158 (228)
.+++|+.|+.|++||+++++....+..| ...|.+++|+|++++|++|+.|+.|++||+++++.+..+.. ...+..
T Consensus 533 ~l~s~s~d~~v~vwd~~~~~~~~~~~~h--~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~---~~~v~~ 607 (694)
T 3dm0_A 533 TIVSASWDKTVKVWNLSNCKLRSTLAGH--TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA---NSVIHA 607 (694)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC---SSCEEE
T ss_pred eEEEEeCCCeEEEEECCCCcEEEEEcCC--CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC---CCcEEE
Confidence 8999999999999999999988888776 77899999999999999999999999999999988877653 456888
Q ss_pred EEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecC------------------CCCCcEEEEeCCCCcEEEEecCCCC
Q 040370 159 AVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN------------------HIGAPRWIEHSPAEAAFITCGTDRS 220 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~l~s~~~dg~ 220 (228)
++|+|++.+++++. ++.|++||+++++.+..+... +...+++++|+|++++|++|+.||.
T Consensus 608 ~~~sp~~~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~ 685 (694)
T 3dm0_A 608 LCFSPNRYWLCAAT--EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685 (694)
T ss_dssp EEECSSSSEEEEEE--TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEcCCCcEEEEEc--CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence 99999988777654 477999999998877665211 1123688999999999999999999
Q ss_pred EEEeeec
Q 040370 221 VRFWKEI 227 (228)
Q Consensus 221 i~vwd~~ 227 (228)
|++|++.
T Consensus 686 i~iW~i~ 692 (694)
T 3dm0_A 686 IRVWGIG 692 (694)
T ss_dssp EEEEEC-
T ss_pred EEEEecc
Confidence 9999974
No 51
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.2e-36 Score=228.10 Aligned_cols=209 Identities=13% Similarity=0.146 Sum_probs=174.8
Q ss_pred eeEEEeecCcceEEEEEeCCC-CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCeEEEEecCCe
Q 040370 11 RAFRVIQDTHNVRSVSFHPSG-DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGMYVTASKDGA 88 (228)
Q Consensus 11 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~ 88 (228)
....+.+|...|++++|+|++ ++|++|+.||.|++||+.+++....... .. |...|.+++|+| ++++|++++.|+.
T Consensus 65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~-h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG-MG-PGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC-CS-TTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec-CC-cCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 344566899999999999998 9999999999999999998776554432 12 388999999999 7899999999999
Q ss_pred EEEEeCCCCceeeEEecc-cccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370 89 IRLWDGVSANCVRSIVGA-HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF 167 (228)
Q Consensus 89 v~iwd~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (228)
|++||++. .....+..+ .+...+.+++|+|++++|++++.|+.|++||+ +++.+..+.. |...+.++.|+|++.+
T Consensus 143 i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~--h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 143 TTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKL--HKAKVTHAEFNPRCDW 218 (383)
T ss_dssp EEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEEC--SSSCEEEEEECSSCTT
T ss_pred EEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEecc--CCCcEEEEEECCCCCC
Confidence 99999986 444455443 22467999999999999999999999999999 4677777766 6778999999999994
Q ss_pred EEEeeCCCCeEEEEEcCC----cceeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeeec
Q 040370 168 VLSIDEPSNEIVIWDALT----AEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 168 ~~~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~ 227 (228)
++++++.|+.|++||+++ +.....+ +|...|.+++|+| ++++|++++.|+.|++||+.
T Consensus 219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 219 LMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY 281 (383)
T ss_dssp EEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred EEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence 444455589999999998 4455554 6999999999999 99999999999999999964
No 52
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.5e-36 Score=243.31 Aligned_cols=210 Identities=20% Similarity=0.290 Sum_probs=175.3
Q ss_pred EEEeecCcceEEEEEeCC-CCEEEEecCCCeEEEEEcccceEE--eeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370 13 FRVIQDTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQCY--LSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI 89 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 89 (228)
-.+.+|...|++++|+|+ +++|++|+.|++|++|++.+.... .......+| ...|.+++|+|++++|++|+.||.|
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h-~~~v~~v~~s~~g~~l~sgs~Dg~v 454 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGH-SHFVEDVVLSSDGQFALSGSWDGEL 454 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECC-SSCEEEEEECTTSSEEEEEETTSEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCC-CCcEEEEEECCCCCEEEEEeCCCcE
Confidence 356689999999999986 579999999999999999764311 111122233 8899999999999999999999999
Q ss_pred EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe-cceeeeeeeEEEECCCC--c
Q 040370 90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL-GATHTQLRFQAVFNDTE--E 166 (228)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~ 166 (228)
++||+.+++....+..| ...|.+++|+|++++|++++.|++|++||+.......... ...|...+.++.|+|++ .
T Consensus 455 ~vwd~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGH--TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEEETTTTEEEEEEECC--SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred EEEECCCCcceeEEeCC--CCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 99999999998888876 7789999999999999999999999999987544332221 23366778999999987 3
Q ss_pred EEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 167 FVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 167 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.+++ ++.|+.|++||+++++....+ .+|.+.|++++|+|++++|++++.||.|++||+.
T Consensus 533 ~l~s-~s~d~~v~vwd~~~~~~~~~~-~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~ 591 (694)
T 3dm0_A 533 TIVS-ASWDKTVKVWNLSNCKLRSTL-AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA 591 (694)
T ss_dssp EEEE-EETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred eEEE-EeCCCeEEEEECCCCcEEEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 4555 555899999999999888777 7899999999999999999999999999999974
No 53
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.1e-37 Score=236.15 Aligned_cols=217 Identities=15% Similarity=0.209 Sum_probs=177.2
Q ss_pred CCcCCccccceeEEE-eecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370 1 FFDFSKATAKRAFRV-IQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM 79 (228)
Q Consensus 1 iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 79 (228)
|||+... ..... .+|...|++++|+|++++|++|+.|+.|++||+.+++....+. .| ...|.+++|+|++++
T Consensus 123 iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~---~h-~~~v~~~~~~~~~~~ 195 (420)
T 3vl1_A 123 VLDSNFN---LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---GH-RATVTDIAIIDRGRN 195 (420)
T ss_dssp EECTTSC---EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE---CC-SSCEEEEEEETTTTE
T ss_pred EEeCCCc---ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc---CC-CCcEEEEEEcCCCCE
Confidence 4776633 23333 4899999999999999999999999999999999887665543 23 889999999999999
Q ss_pred EEEEecCCeEEEEeCCCCceeeEEeccc-cc---------------------ceeEEEEECCCCCEEEEeeCCCeEEEEE
Q 040370 80 YVTASKDGAIRLWDGVSANCVRSIVGAH-GT---------------------AEATSANFTKDQRFVLSCGKDSTVKLWE 137 (228)
Q Consensus 80 l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~---------------------~~i~~~~~~~~~~~l~~~~~d~~i~~wd 137 (228)
|++++.||.|++||+++++....+..+. +. ..+.+++|+|++++|++++.||.|++||
T Consensus 196 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 275 (420)
T 3vl1_A 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHN 275 (420)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEE
T ss_pred EEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEE
Confidence 9999999999999999999888886532 12 3444556689999999999999999999
Q ss_pred ccCCeeEEEEecceeeeeeeEEEECCCCc-EEEEeeCCCCeEEEEEcCCcce-eEEeecCCCCCcEEEEeCCCCcEEEEe
Q 040370 138 VSSGRLVKQYLGATHTQLRFQAVFNDTEE-FVLSIDEPSNEIVIWDALTAEK-VAKWSSNHIGAPRWIEHSPAEAAFITC 215 (228)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~ 215 (228)
+++++.+..+.. .+...+.++.|+|++. +++++ +.||.|++||+++++. +..+...|...+.++.+ +++++|+++
T Consensus 276 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~ 352 (420)
T 3vl1_A 276 VFSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYAG-YENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSS 352 (420)
T ss_dssp TTTCCEEEEECC-TTSSCEEEEEECSSCTTEEEEE-ETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEE
T ss_pred CCCCceeEEccc-ccCCCceeEEEeCCCCCEEEEE-eCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEe
Confidence 999887777643 2567889999999999 66655 4589999999998765 55554457778888865 578899999
Q ss_pred cCCCCEEEeeec
Q 040370 216 GTDRSVRFWKEI 227 (228)
Q Consensus 216 ~~dg~i~vwd~~ 227 (228)
+.||.|++|++.
T Consensus 353 ~~d~~v~iw~~~ 364 (420)
T 3vl1_A 353 GFDTSIKLDIIS 364 (420)
T ss_dssp TTTEEEEEEEEC
T ss_pred cCCccEEEEecc
Confidence 999999999964
No 54
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.5e-36 Score=222.64 Aligned_cols=210 Identities=19% Similarity=0.281 Sum_probs=173.1
Q ss_pred EEEeecCcceEEEEEeCC-CCEEEEecCCCeEEEEEcccceEEe--eeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370 13 FRVIQDTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQCYL--SANVPEISVNGAINQVRYSSTGGMYVTASKDGAI 89 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 89 (228)
.++.+|.+.|++++|+|+ +++|++|+.|++|+|||+.+.+... ......+| ...|.+++|+|++++|++++.|+.|
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h-~~~V~~~~~s~dg~~l~s~~~d~~i 110 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH-SHFVSDVVISSDGQFALSGSWDGTL 110 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCC-CCCEEEEEECCCCCEEEEEcccccc
Confidence 346689999999999997 6899999999999999998754221 11122233 8899999999999999999999999
Q ss_pred EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCc-EE
Q 040370 90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEE-FV 168 (228)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 168 (228)
++|+............+ ...+....+++++++|++++.|+.+++||+....... .....+...+..+.+++++. .+
T Consensus 111 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~ 187 (340)
T 4aow_A 111 RLWDLTTGTTTRRFVGH--TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT-VQDESHSEWVSCVRFSPNSSNPI 187 (340)
T ss_dssp EEEETTTTEEEEEEECC--SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE-ECSSSCSSCEEEEEECSCSSSCE
T ss_pred eEEeecccceeeeecCC--CCceeEEEEeecCccceeecCCCeEEEEEeCCCceEE-EEeccccCcccceEEccCCCCcE
Confidence 99999988877777665 5678888999999999999999999999997655433 22333667777888887653 34
Q ss_pred EEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 169 LSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 169 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+++++.|+.|++||+++++....+ .+|.++|++++|+|++++|++|+.||.|++||+.
T Consensus 188 ~~s~~~d~~i~i~d~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~ 245 (340)
T 4aow_A 188 IVSCGWDKLVKVWNLANCKLKTNH-IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 245 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred EEEEcCCCEEEEEECCCCceeeEe-cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEec
Confidence 444555899999999999988887 7899999999999999999999999999999964
No 55
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.2e-35 Score=218.93 Aligned_cols=220 Identities=18% Similarity=0.269 Sum_probs=177.3
Q ss_pred CCcCCcccc---ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeecc------------------
Q 040370 1 FFDFSKATA---KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANV------------------ 59 (228)
Q Consensus 1 iwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~------------------ 59 (228)
|||+..... .....+.+|...|.+++|+|++++|++|+.|+.|++|+............
T Consensus 65 vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 144 (340)
T 4aow_A 65 MWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 144 (340)
T ss_dssp EEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred EEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccce
Confidence 588775443 23445568999999999999999999999999999999866543221110
Q ss_pred ---------------------ceeeeccceeeEEeCCCC--CeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEE
Q 040370 60 ---------------------PEISVNGAINQVRYSSTG--GMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSAN 116 (228)
Q Consensus 60 ---------------------~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~ 116 (228)
....|...+.+++|++++ .++++++.|+.|++||+++++....+..+ ...|.+++
T Consensus 145 s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h--~~~v~~~~ 222 (340)
T 4aow_A 145 SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH--TGYLNTVT 222 (340)
T ss_dssp EEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEE
T ss_pred eecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCC--CCcEEEEE
Confidence 001125678888888754 47889999999999999999888888776 77899999
Q ss_pred ECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee---
Q 040370 117 FTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS--- 193 (228)
Q Consensus 117 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--- 193 (228)
|+|++++|++|+.|+.|++||+++.+.+..+.. ...+..+.++|++.++++ +. |+.|++||++++.....+.
T Consensus 223 ~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~-~~-d~~i~iwd~~~~~~~~~~~~~~ 297 (340)
T 4aow_A 223 VSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG---GDIINALCFSPNRYWLCA-AT-GPSIKIWDLEGKIIVDELKQEV 297 (340)
T ss_dssp ECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC---SSCEEEEEECSSSSEEEE-EE-TTEEEEEETTTTEEEEEECCC-
T ss_pred ECCCCCEEEEEeCCCeEEEEEeccCceeeeecC---CceEEeeecCCCCceeec-cC-CCEEEEEECCCCeEEEeccccc
Confidence 999999999999999999999999998888764 456788899998766544 44 7999999999877665542
Q ss_pred -----cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 194 -----SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 194 -----~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.+|...|++++|+|++++|++|+.||.|+|||+.
T Consensus 298 ~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 298 ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp ------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred eeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 3688999999999999999999999999999975
No 56
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-38 Score=236.68 Aligned_cols=218 Identities=11% Similarity=0.068 Sum_probs=167.4
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
|||+.....+....+.+|...|.+++|+|++++|++++.|+.|++||+.+++..........| ...|.+++|+|++++|
T Consensus 37 iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l 115 (377)
T 3dwl_C 37 LYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRL-NRAATFVRWSPNEDKF 115 (377)
T ss_dssp EEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCC-SSCEEEEECCTTSSCC
T ss_pred EEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeccc-CCceEEEEECCCCCEE
Confidence 466664432445555689999999999999999999999999999999987611111112223 7899999999999999
Q ss_pred EEEecCCeEEEEeCCCCce---eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC-----------------
Q 040370 81 VTASKDGAIRLWDGVSANC---VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS----------------- 140 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~----------------- 140 (228)
++++.|+.|++||+++++. ...+...+ ...|.+++|+|++++|++++.|+.|++||++.
T Consensus 116 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 194 (377)
T 3dwl_C 116 AVGSGARVISVCYFEQENDWWVSKHLKRPL-RSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLP 194 (377)
T ss_dssp EEEESSSCEEECCC-----CCCCEEECSSC-CSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCC
T ss_pred EEEecCCeEEEEEECCcccceeeeEeeccc-CCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccc
Confidence 9999999999999998873 56666522 78999999999999999999999999999952
Q ss_pred -CeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcce----eEEeecCCCCCcEEEEeCCCCcEEEEe
Q 040370 141 -GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK----VAKWSSNHIGAPRWIEHSPAEAAFITC 215 (228)
Q Consensus 141 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~ 215 (228)
++.+..+ .+...+.++.|+|++.++++++. |+.|++||+++++. +..+ .+|..+|.+++|+|++++|+++
T Consensus 195 ~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~ 269 (377)
T 3dwl_C 195 FNTVCAEY---PSGGWVHAVGFSPSGNALAYAGH-DSSVTIAYPSAPEQPPRALITV-KLSQLPLRSLLWANESAIVAAG 269 (377)
T ss_dssp EEEEEECC---CCSSSEEEEEECTTSSCEEEEET-TTEEC-CEECSTTSCEEECCCE-ECSSSCEEEEEEEETTEEEEEE
T ss_pred hhhhhhcc---cCCceEEEEEECCCCCEEEEEeC-CCcEEEEECCCCCCcceeeEee-cCCCCceEEEEEcCCCCEEEEE
Confidence 3344444 37778999999999999888766 89999999999887 5555 6899999999999999999999
Q ss_pred cCCCCEEEeee
Q 040370 216 GTDRSVRFWKE 226 (228)
Q Consensus 216 ~~dg~i~vwd~ 226 (228)
+.|+.+ +|+.
T Consensus 270 ~~~~~~-~~~~ 279 (377)
T 3dwl_C 270 YNYSPI-LLQG 279 (377)
T ss_dssp SSSSEE-EECC
T ss_pred cCCcEE-EEEe
Confidence 877655 6654
No 57
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.2e-36 Score=231.39 Aligned_cols=213 Identities=17% Similarity=0.327 Sum_probs=175.7
Q ss_pred cceeEEEeecCcceEEEEEeCCCC-EEEEecCCCeEEEEEcccceE----EeeeccceeeeccceeeEEeCC-CCCeEEE
Q 040370 9 AKRAFRVIQDTHNVRSVSFHPSGD-FLLAGTDHPIAHLYDVNTFQC----YLSANVPEISVNGAINQVRYSS-TGGMYVT 82 (228)
Q Consensus 9 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~ 82 (228)
......+.+|...|.+++|+|++. +|++|+.||.|++|++..+.. ........ .|...|.+++|+| ++.+|++
T Consensus 171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~s 249 (430)
T 2xyi_A 171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFT-GHTAVVEDVAWHLLHESLFGS 249 (430)
T ss_dssp CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEEC-CCSSCEEEEEECSSCTTEEEE
T ss_pred CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeec-CCCCCEeeeEEeCCCCCEEEE
Confidence 456677778999999999999988 999999999999999987321 11112222 2378899999999 6789999
Q ss_pred EecCCeEEEEeCCCC---ceeeEEecccccceeEEEEECCCCC-EEEEeeCCCeEEEEEccC-CeeEEEEecceeeeeee
Q 040370 83 ASKDGAIRLWDGVSA---NCVRSIVGAHGTAEATSANFTKDQR-FVLSCGKDSTVKLWEVSS-GRLVKQYLGATHTQLRF 157 (228)
Q Consensus 83 ~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~ 157 (228)
++.||.|++||++++ +....+..+ ...|++++|+|++. ++++|+.||.|++||+++ .+.+..+.. |...+.
T Consensus 250 ~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~--h~~~v~ 325 (430)
T 2xyi_A 250 VADDQKLMIWDTRNNNTSKPSHTVDAH--TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES--HKDEIF 325 (430)
T ss_dssp EETTSEEEEEETTCSCSSSCSEEEECC--SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC--CSSCEE
T ss_pred EeCCCeEEEEECCCCCCCcceeEeecC--CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec--CCCCEE
Confidence 999999999999987 456666554 77899999999887 688999999999999998 455666665 677899
Q ss_pred EEEECCCCcEEEEeeCCCCeEEEEEcCCc--------------ceeEEeecCCCCCcEEEEeCCCCc-EEEEecCCCCEE
Q 040370 158 QAVFNDTEEFVLSIDEPSNEIVIWDALTA--------------EKVAKWSSNHIGAPRWIEHSPAEA-AFITCGTDRSVR 222 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~ 222 (228)
++.|+|++..++++++.|+.|++||++.. +.+... .+|...|.+++|+|+++ +|++++.||.|+
T Consensus 326 ~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~ 404 (430)
T 2xyi_A 326 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGHTAKISDFSWNPNEPWIICSVSEDNIMQ 404 (430)
T ss_dssp EEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEEC-CCCSSCEEEEEECSSSTTEEEEEETTSEEE
T ss_pred EEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEc-CCCCCCceEEEECCCCCCEEEEEECCCCEE
Confidence 99999999876666666899999999872 344444 68999999999999998 999999999999
Q ss_pred Eeeec
Q 040370 223 FWKEI 227 (228)
Q Consensus 223 vwd~~ 227 (228)
+|++.
T Consensus 405 iw~~~ 409 (430)
T 2xyi_A 405 VWQMA 409 (430)
T ss_dssp EEEEC
T ss_pred EeEcc
Confidence 99974
No 58
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-37 Score=232.25 Aligned_cols=216 Identities=12% Similarity=0.200 Sum_probs=176.1
Q ss_pred cceeEEE-eecCcceEEEEEeC-CCCEEEEecCCCeEEEEEccc---ceEEeeeccceeeeccceeeEEeCCCCCeEEEE
Q 040370 9 AKRAFRV-IQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNT---FQCYLSANVPEISVNGAINQVRYSSTGGMYVTA 83 (228)
Q Consensus 9 ~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 83 (228)
.+....+ .+|...|++++|+| ++++|++|+.||.|++||+.+ +.... ......|...|.+++|+|++++|++|
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~ 129 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS--SSLTYDCSSTVTQITMIPNFDAFAVS 129 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS--CSEEEECSSCEEEEEECTTSSEEEEE
T ss_pred ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc--eeeeccCCCCEEEEEEeCCCCEEEEE
Confidence 3445566 57899999999999 999999999999999999987 43111 11122348899999999999999999
Q ss_pred ecCCeEEEEeCC---CCceeeEEecc--------c--ccceeEEEE--ECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe
Q 040370 84 SKDGAIRLWDGV---SANCVRSIVGA--------H--GTAEATSAN--FTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL 148 (228)
Q Consensus 84 ~~dg~v~iwd~~---~~~~~~~~~~~--------~--~~~~i~~~~--~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 148 (228)
+.||.|++||++ +++.......+ . +...+.++. +++++.++++++.|+.|++||+++++.+..+.
T Consensus 130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE 209 (437)
T ss_dssp ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence 999999999995 55444433221 1 244566666 56789999999999999999999999999988
Q ss_pred cceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeC----CCCcEEEEecCCCCEEEe
Q 040370 149 GATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHS----PAEAAFITCGTDRSVRFW 224 (228)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~s~~~dg~i~vw 224 (228)
.+.|...+.+++|+|++.++++++. ||.|++||+++++.+..+...|..+|.+++|+ |++.+|++++.||.|++|
T Consensus 210 ~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iw 288 (437)
T 3gre_A 210 NSPRHGAVSSICIDEECCVLILGTT-RGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIW 288 (437)
T ss_dssp CCGGGCCEEEEEECTTSCEEEEEET-TSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred cCCCCCceEEEEECCCCCEEEEEcC-CCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEE
Confidence 7556778999999999999888666 79999999999998888755788899999555 568899999999999999
Q ss_pred eec
Q 040370 225 KEI 227 (228)
Q Consensus 225 d~~ 227 (228)
|+.
T Consensus 289 d~~ 291 (437)
T 3gre_A 289 NFV 291 (437)
T ss_dssp ETT
T ss_pred EcC
Confidence 974
No 59
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.2e-37 Score=231.59 Aligned_cols=218 Identities=13% Similarity=0.201 Sum_probs=176.9
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM 79 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 79 (228)
|||+... +....+.+|..+|.+++|+| ++++|++|+.||.|++||+.+++....+.....| ...|.+++|+|++++
T Consensus 99 v~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~ 175 (366)
T 3k26_A 99 IINPITM--QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH-RDEVLSADYDLLGEK 175 (366)
T ss_dssp EECTTTC--CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSC-SSCEEEEEECTTSSE
T ss_pred EEEchhc--eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccc-cCceeEEEECCCCCE
Confidence 4777644 33445557999999999999 9999999999999999999998877766432333 889999999999999
Q ss_pred EEEEecCCeEEEEeCCCCceeeEEec--------------------------ccccceeEEEEECCCCCEEEEeeCCCeE
Q 040370 80 YVTASKDGAIRLWDGVSANCVRSIVG--------------------------AHGTAEATSANFTKDQRFVLSCGKDSTV 133 (228)
Q Consensus 80 l~~~~~dg~v~iwd~~~~~~~~~~~~--------------------------~~~~~~i~~~~~~~~~~~l~~~~~d~~i 133 (228)
|++++.||.|++||+++++....+.. ..+...|.+++|+ ++++++++.|+.|
T Consensus 176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i 253 (366)
T 3k26_A 176 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAI 253 (366)
T ss_dssp EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEE
T ss_pred EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEE
Confidence 99999999999999988765433321 0137789999998 7799999999999
Q ss_pred EEEEccCCee--------------EEEEecceeeeeeeEEEECCC--CcEEEEeeCCCCeEEEEEcCCccee----EEee
Q 040370 134 KLWEVSSGRL--------------VKQYLGATHTQLRFQAVFNDT--EEFVLSIDEPSNEIVIWDALTAEKV----AKWS 193 (228)
Q Consensus 134 ~~wd~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~i~d~~~~~~~----~~~~ 193 (228)
++||+++++. +..+.. +...+..+.|+|+ +.++++++. ||.|++||+++++.. ..+
T Consensus 254 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~- 329 (366)
T 3k26_A 254 VCWKPGKMEDDIDKIKPSESNVTILGRFDY--SQCDIWYMRFSMDFWQKMLALGNQ-VGKLYVWDLEVEDPHKAKCTTL- 329 (366)
T ss_dssp EEEEESSTTCCGGGCCTTCCCEEEEEEEEC--SSCCSSCCCCEECTTSSEEEEECT-TSCEEEEECCSSSGGGCEEEEE-
T ss_pred EEEeCCCccccccccccCCcchheeccccc--cCCcEEEEEEcCCCCCcEEEEEec-CCcEEEEECCCCCCccccceEE-
Confidence 9999987643 445544 5566778888888 888887655 899999999987643 244
Q ss_pred cCC--CCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 194 SNH--IGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 194 ~~~--~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
..| ...|.+++|+|++++|++++.||.|++||+.
T Consensus 330 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 330 THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 455 7899999999999999999999999999974
No 60
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5.5e-36 Score=235.30 Aligned_cols=209 Identities=20% Similarity=0.439 Sum_probs=179.0
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
+||.+ ..+...+.+|...|.+++|+|++++|++|+.|+.|++|+.. ++....+. .| ...|.+++|+|++++|
T Consensus 329 ~w~~~---~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~~~---~~-~~~v~~~~~s~dg~~l 400 (577)
T 2ymu_A 329 LWNRN---GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLT---GH-SSSVRGVAFSPDGQTI 400 (577)
T ss_dssp EEETT---SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEEEEE---CC-SSCEEEEEECTTSSCE
T ss_pred EEeCC---CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEEEec---CC-CCCeEEEEECCCCCEE
Confidence 35554 33455667899999999999999999999999999999964 44444333 23 7889999999999999
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV 160 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
++++.|+.|++||. +++.+..+..+ ...|.+++|+|++++|++++.|+.|++||. +++.+..+.. +...+.+++
T Consensus 401 ~~~~~d~~v~~~~~-~~~~~~~~~~~--~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~--~~~~v~~~~ 474 (577)
T 2ymu_A 401 ASASDDKTVKLWNR-NGQLLQTLTGH--SSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTG--HSSSVRGVA 474 (577)
T ss_dssp EEEETTSEEEEECT-TCCEEEEEECC--SSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEEC--CSSCEEEEE
T ss_pred EEEeCCCEEEEEeC-CCCEEEEecCC--CCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcC--CCCCEEEEE
Confidence 99999999999995 56777777766 778999999999999999999999999996 5677777766 667889999
Q ss_pred ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
|+|+++++++++. |+.|++||. +++.+..+ .+|...|++++|+|++++|++++.||.|++||.
T Consensus 475 ~spd~~~las~~~-d~~i~iw~~-~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 475 FSPDGQTIASASD-DKTVKLWNR-NGQLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp ECTTSCEEEEEET-TSEEEEEET-TSCEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred EcCCCCEEEEEeC-CCEEEEEcC-CCCEEEEE-eCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence 9999999988766 899999994 67777777 789999999999999999999999999999984
No 61
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.1e-38 Score=233.62 Aligned_cols=201 Identities=11% Similarity=0.067 Sum_probs=160.6
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce--EEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ--CYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG 94 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~ 94 (228)
.+..+|++++|+|++++|++|+.|+.|++||+.++. ....+. .| ...|.+++|+|++++|++++.||.|++||+
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~---~h-~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFS---DH-DKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBC---CC-SSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEe---cC-CceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 367899999999999999999999999999999873 333332 33 889999999999999999999999999999
Q ss_pred CCCc---eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee---EEEEecceeeeeeeEEEECCCCcEE
Q 040370 95 VSAN---CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL---VKQYLGATHTQLRFQAVFNDTEEFV 168 (228)
Q Consensus 95 ~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (228)
++++ ....+..+ ...|.+++|+|++++|++++.|+.|++||+++++. ...+.. .|...+.++.|+|++.++
T Consensus 85 ~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l 161 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRL--NRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR-PLRSTILSLDWHPNNVLL 161 (377)
T ss_dssp ----CCCCEEECCCC--SSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS-SCCSCEEEEEECTTSSEE
T ss_pred CCCCceeeeeEeccc--CCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec-ccCCCeEEEEEcCCCCEE
Confidence 9877 44444443 78999999999999999999999999999998763 455543 267789999999999988
Q ss_pred EEeeCCCCeEEEEEcCC------------------cceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 169 LSIDEPSNEIVIWDALT------------------AEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 169 ~~~~~~d~~i~i~d~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
++++. |+.|++||++. ++....+ +|...|.+++|+|++++|++++.||.|++||+.
T Consensus 162 ~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~ 235 (377)
T 3dwl_C 162 AAGCA-DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPS 235 (377)
T ss_dssp EEEES-SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEEC
T ss_pred EEEeC-CCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 88766 79999999852 3344444 899999999999999999999999999999974
No 62
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-35 Score=219.50 Aligned_cols=219 Identities=20% Similarity=0.283 Sum_probs=183.8
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccce-------------------
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE------------------- 61 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~------------------- 61 (228)
|||+... +....+.+|...|.+++|+|++++|++++.||.|++||+.+++.........
T Consensus 58 vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 135 (369)
T 3zwl_B 58 VWYSLNG--ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILD 135 (369)
T ss_dssp EEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEEC
T ss_pred EEeCCCc--hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecC
Confidence 4776643 4455566799999999999999999999999999999998876544332100
Q ss_pred ----------------------------------eeecc--ceeeEEeCCCCCeEEEEecCCeEEEEeCCC-CceeeEEe
Q 040370 62 ----------------------------------ISVNG--AINQVRYSSTGGMYVTASKDGAIRLWDGVS-ANCVRSIV 104 (228)
Q Consensus 62 ----------------------------------~~~~~--~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~ 104 (228)
..+.. .+.+++|+|+++++++++.||.|++||+++ ++....+.
T Consensus 136 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 215 (369)
T 3zwl_B 136 NVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID 215 (369)
T ss_dssp CBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE
T ss_pred CccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe
Confidence 00011 788888999999999999999999999998 66777776
Q ss_pred cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC--------
Q 040370 105 GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN-------- 176 (228)
Q Consensus 105 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-------- 176 (228)
.+ ...|.+++|+|++++|++++.|+.|++||+++++.+..+. +...+..+.++|++.++++++..++
T Consensus 216 ~~--~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 290 (369)
T 3zwl_B 216 LH--EKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSA 290 (369)
T ss_dssp CC--SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSCEEEEEECSSSSEEEEEECCC---------
T ss_pred cC--CCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEec
Confidence 65 7789999999999999999999999999999998888876 4567889999999999999877422
Q ss_pred -----eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 177 -----EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 177 -----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.+++||..+++....+ .+|...|.+++|+|++++|++++.||.|++|++.
T Consensus 291 ~~~~~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 291 NEGKFEARFYHKIFEEEIGRV-QGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp ----CEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred CCCcceeEEEecCCCcchhhe-ecccCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence 8999999999998888 7899999999999999999999999999999974
No 63
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=6.9e-37 Score=226.93 Aligned_cols=222 Identities=9% Similarity=0.126 Sum_probs=176.9
Q ss_pred CCcCCccccceeEEEeecCcceEEEEE------eCCCCEEEEecCCCeEEEEEcccce-EEeeeccceeeeccceeeEE-
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSF------HPSGDFLLAGTDHPIAHLYDVNTFQ-CYLSANVPEISVNGAINQVR- 72 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~i~~~~- 72 (228)
+||+.... .....+.+|...|.+++| +|++++|++++.|+.|++||+.+++ ..........+....+.+++
T Consensus 94 iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (357)
T 3i2n_A 94 IWNLEAPE-MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAF 172 (357)
T ss_dssp EECTTSCS-SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEE
T ss_pred EEeCCCCC-ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEE
Confidence 47777543 245556689999999955 6789999999999999999999876 44544443333345788888
Q ss_pred ---eCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC---CCCEEEEeeCCCeEEEEEccCCeeEEE
Q 040370 73 ---YSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK---DQRFVLSCGKDSTVKLWEVSSGRLVKQ 146 (228)
Q Consensus 73 ---~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~~wd~~~~~~~~~ 146 (228)
|+|+++++++++.||.|++||+++++..... .+ ...+.+++|+| +++++++++.|+.|++||+++++....
T Consensus 173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~--~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 249 (357)
T 3i2n_A 173 GNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET-NI--KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG 249 (357)
T ss_dssp ECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE-EC--SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred EeccCCCCCEEEEEccCCeEEEEECccCceeeec-CC--CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence 7899999999999999999999998875443 22 67899999999 999999999999999999998766544
Q ss_pred Ee---cceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc-------------------eeEEeecCCCCCcEEEE
Q 040370 147 YL---GATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE-------------------KVAKWSSNHIGAPRWIE 204 (228)
Q Consensus 147 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-------------------~~~~~~~~~~~~v~~~~ 204 (228)
+. ...+...+..+.|+|++..++++++.||.|++||++++. .+..+ .+|...|.+++
T Consensus 250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~v~~~~ 328 (357)
T 3i2n_A 250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV-TLSTQPISSLD 328 (357)
T ss_dssp EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE-ECCSSCEEEEE
T ss_pred eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc-ccCCCCeeEEE
Confidence 43 113677899999999999555555668999999998653 33344 68999999999
Q ss_pred eCCCCcEEE-EecCCCCEEEeeec
Q 040370 205 HSPAEAAFI-TCGTDRSVRFWKEI 227 (228)
Q Consensus 205 ~~~~~~~l~-s~~~dg~i~vwd~~ 227 (228)
|+|++++|+ +++.||.|++||+.
T Consensus 329 ~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 329 WSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp ECSSSTTEEEEEETTSEEEEEEEC
T ss_pred EcCCCCeEEEEecCCCcEEEEECC
Confidence 999999998 89999999999974
No 64
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-36 Score=226.75 Aligned_cols=212 Identities=16% Similarity=0.219 Sum_probs=183.7
Q ss_pred cceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccce---------------------------
Q 040370 9 AKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE--------------------------- 61 (228)
Q Consensus 9 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~--------------------------- 61 (228)
......+..|...|.+++|+|++++|++++.|+.|++||+.+++....+....
T Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (425)
T 1r5m_A 139 GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD 218 (425)
T ss_dssp SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT
T ss_pred CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC
Confidence 34555666799999999999999999999999999999998877654332211
Q ss_pred -------------------------eeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEE
Q 040370 62 -------------------------ISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSAN 116 (228)
Q Consensus 62 -------------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~ 116 (228)
..|...|.+++|+|++++|++++.||.|++||+++++....+..+ ...+.+++
T Consensus 219 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~ 296 (425)
T 1r5m_A 219 KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH--SQSIVSAS 296 (425)
T ss_dssp EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCC--SSCEEEEE
T ss_pred EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCC--CccEEEEE
Confidence 123678999999999999999999999999999999888888765 67899999
Q ss_pred ECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc---------
Q 040370 117 FTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE--------- 187 (228)
Q Consensus 117 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--------- 187 (228)
|+|++ ++++++.|+.|++||+++++.+..+.. +...+..+.|+|++.++++++. ||.|++||+++++
T Consensus 297 ~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~ 372 (425)
T 1r5m_A 297 WVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV--DGVPIFAGRISQDGQKYAVAFM-DGQVNVYDLKKLNSKSRSLYGN 372 (425)
T ss_dssp EETTT-EEEEEETTSEEEEEETTTTEEEEEEEC--TTCCEEEEEECTTSSEEEEEET-TSCEEEEECHHHHC--------
T ss_pred ECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc--CCccEEEEEEcCCCCEEEEEEC-CCeEEEEECCCCccceeeeecc
Confidence 99999 999999999999999999998888876 5667889999999999888766 7999999999888
Q ss_pred -----------eeEEeecCCCC--CcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 188 -----------KVAKWSSNHIG--APRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 188 -----------~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.+..+ ..|.. .|.+++|+|++++|++++.||.|++||+.
T Consensus 373 ~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 373 RDGILNPLPIPLYASY-QSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ------CEECCEEEEE-CCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred cccccCcccchhhhhh-cCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 66666 67765 99999999999999999999999999974
No 65
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.4e-36 Score=225.52 Aligned_cols=214 Identities=16% Similarity=0.257 Sum_probs=181.6
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
|||+.......... ..|...|.+++|+|++++|++|+.||.|++||+.+++....+.. | ...|.+++| +++.+
T Consensus 117 lw~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~-~~~v~~~~~--~~~~l 189 (401)
T 4aez_A 117 VWNADSGSVSALAE-TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG---H-QARVGCLSW--NRHVL 189 (401)
T ss_dssp EEETTTCCEEEEEE-CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC---C-SSCEEEEEE--ETTEE
T ss_pred EeeCCCCcEeEeee-cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecC---C-CCceEEEEE--CCCEE
Confidence 47776554433322 24789999999999999999999999999999999887766552 2 789999999 46799
Q ss_pred EEEecCCeEEEEeCCC-CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEE
Q 040370 81 VTASKDGAIRLWDGVS-ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQA 159 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
++|+.||.|++||++. ......+..+ ...|.+++|+|++++|++++.|+.|++||+++++....+.. +...+.++
T Consensus 190 ~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--~~~~v~~~ 265 (401)
T 4aez_A 190 SSGSRSGAIHHHDVRIANHQIGTLQGH--SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN--HNAAVKAV 265 (401)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECC--CSSCCCEE
T ss_pred EEEcCCCCEEEEecccCcceeeEEcCC--CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecC--CcceEEEE
Confidence 9999999999999994 5556666665 77999999999999999999999999999999888887765 67788999
Q ss_pred EECCCCcEEEEeeC--CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEE--ecCCCCEEEeeec
Q 040370 160 VFNDTEEFVLSIDE--PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFIT--CGTDRSVRFWKEI 227 (228)
Q Consensus 160 ~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s--~~~dg~i~vwd~~ 227 (228)
.|+|++..++++++ .|+.|++||+++++....+ .+...+.+++|+|++++|++ |+.||.|++||+.
T Consensus 266 ~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~ 335 (401)
T 4aez_A 266 AWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV--DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYS 335 (401)
T ss_dssp EECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE--ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEE
T ss_pred EECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE--eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecC
Confidence 99998877777654 6899999999999988887 46778999999999999999 5589999999974
No 66
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-37 Score=233.02 Aligned_cols=222 Identities=13% Similarity=0.262 Sum_probs=184.9
Q ss_pred CCcCCccc--cceeEEEeecCcceEEEEEeCC-CCEEEEecCCCeEEEEEcccce------EEeeeccceeeeccceeeE
Q 040370 1 FFDFSKAT--AKRAFRVIQDTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQ------CYLSANVPEISVNGAINQV 71 (228)
Q Consensus 1 iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~------~~~~~~~~~~~~~~~i~~~ 71 (228)
|||+.... .+....+.+|...|.+++|+|+ +++|++++.|+.|++||+.+++ ..........| ...|.++
T Consensus 93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~ 171 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS-VDEVISL 171 (416)
T ss_dssp EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS-SCCCCEE
T ss_pred EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCC-CCCeeEE
Confidence 47776521 2355566689999999999998 8999999999999999999876 32222222233 7899999
Q ss_pred EeCCC-CCeEEEEecCCeEEEEeCCCCceeeEEecccc----cceeEEEEECCCC-CEEEEeeCCC---eEEEEEccCC-
Q 040370 72 RYSST-GGMYVTASKDGAIRLWDGVSANCVRSIVGAHG----TAEATSANFTKDQ-RFVLSCGKDS---TVKLWEVSSG- 141 (228)
Q Consensus 72 ~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~----~~~i~~~~~~~~~-~~l~~~~~d~---~i~~wd~~~~- 141 (228)
+|+|+ +.++++++.||.|++||+++++.+..+..+.. ...+.+++|+|++ .++++++.|+ .|++||++++
T Consensus 172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~ 251 (416)
T 2pm9_A 172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN 251 (416)
T ss_dssp EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence 99998 78999999999999999999988888776421 5689999999987 6899999998 9999999986
Q ss_pred eeEEEEe-cceeeeeeeEEEECC-CCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCC-cEEEEecCC
Q 040370 142 RLVKQYL-GATHTQLRFQAVFND-TEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAE-AAFITCGTD 218 (228)
Q Consensus 142 ~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d 218 (228)
+....+. . +...+..+.|+| ++.++++++. |+.|++||+++++.+..+ ..|...|.+++|+|++ .+|++++.|
T Consensus 252 ~~~~~~~~~--~~~~v~~~~~s~~~~~~l~s~~~-dg~v~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~s~~~d 327 (416)
T 2pm9_A 252 TPLQTLNQG--HQKGILSLDWCHQDEHLLLSSGR-DNTVLLWNPESAEQLSQF-PARGNWCFKTKFAPEAPDLFACASFD 327 (416)
T ss_dssp SCSBCCCSC--CSSCEEEEEECSSCSSCEEEEES-SSEEEEECSSSCCEEEEE-ECSSSCCCCEEECTTCTTEEEECCSS
T ss_pred CCcEEeecC--ccCceeEEEeCCCCCCeEEEEeC-CCCEEEeeCCCCccceee-cCCCCceEEEEECCCCCCEEEEEecC
Confidence 4555554 3 677889999999 7788777665 899999999999998888 6899999999999998 899999999
Q ss_pred CCEEEeeec
Q 040370 219 RSVRFWKEI 227 (228)
Q Consensus 219 g~i~vwd~~ 227 (228)
|.|++||+.
T Consensus 328 ~~i~iw~~~ 336 (416)
T 2pm9_A 328 NKIEVQTLQ 336 (416)
T ss_dssp SEEEEEESC
T ss_pred CcEEEEEcc
Confidence 999999974
No 67
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.6e-36 Score=228.16 Aligned_cols=223 Identities=12% Similarity=0.180 Sum_probs=184.4
Q ss_pred CCcCCccc----cceeEEEeecCcceEEEEEeCC----C---CEEEEecCCCeEEEEEcccceE-----Eeeeccceeee
Q 040370 1 FFDFSKAT----AKRAFRVIQDTHNVRSVSFHPS----G---DFLLAGTDHPIAHLYDVNTFQC-----YLSANVPEISV 64 (228)
Q Consensus 1 iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~----~---~~l~~~~~d~~i~vw~~~~~~~-----~~~~~~~~~~~ 64 (228)
|||+.... ......+.+|..+|.+++|+|+ + ++|++++.|+.|++|++.+++. ........ .+
T Consensus 40 iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~~ 118 (397)
T 1sq9_A 40 VWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLD-SD 118 (397)
T ss_dssp EEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSC-TT
T ss_pred EEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccc-cc
Confidence 47776554 3356677789999999999999 9 9999999999999999998764 33333221 00
Q ss_pred --ccceeeEEeC----CCCCe-EEEEecCCeEEEEeCCC------Cceee-----EEec-----ccccceeEEEEECCCC
Q 040370 65 --NGAINQVRYS----STGGM-YVTASKDGAIRLWDGVS------ANCVR-----SIVG-----AHGTAEATSANFTKDQ 121 (228)
Q Consensus 65 --~~~i~~~~~~----~~~~~-l~~~~~dg~v~iwd~~~------~~~~~-----~~~~-----~~~~~~i~~~~~~~~~ 121 (228)
...|.+++|+ |++++ |++++.||.|++||+++ ++.+. .+.. ..+...+.+++|+|++
T Consensus 119 ~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 198 (397)
T 1sq9_A 119 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG 198 (397)
T ss_dssp GGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS
T ss_pred cCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc
Confidence 3789999999 99999 99999999999999998 66665 6653 3347789999999999
Q ss_pred CEEEEeeCCCeEEEEEccCCeeEEEEec-cee---eeeeeEEEECCCCcEEEEeeCCC---CeEEEEEcCCcceeEEeec
Q 040370 122 RFVLSCGKDSTVKLWEVSSGRLVKQYLG-ATH---TQLRFQAVFNDTEEFVLSIDEPS---NEIVIWDALTAEKVAKWSS 194 (228)
Q Consensus 122 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~d---~~i~i~d~~~~~~~~~~~~ 194 (228)
++++++.|+.|++||+++++.+..+.. ..| ...+.++.|+|++.++++++. | +.|++||+++++.+..+ .
T Consensus 199 -~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~-d~~~g~i~i~d~~~~~~~~~~-~ 275 (397)
T 1sq9_A 199 -LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD-SNSFGCITLYETEFGERIGSL-S 275 (397)
T ss_dssp -EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE-ETTEEEEEEEETTTCCEEEEE-C
T ss_pred -eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEec-CCCCceEEEEECCCCccccee-c
Confidence 999999999999999999988888764 113 667899999999999888665 7 99999999999988887 5
Q ss_pred C-------------CCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 195 N-------------HIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 195 ~-------------~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
. |...|.+++|+|++++|++++.||.|++||+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 276 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp BC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred cCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 5 89999999999999999999999999999974
No 68
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1e-35 Score=221.92 Aligned_cols=204 Identities=10% Similarity=0.058 Sum_probs=174.4
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce--EEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ--CYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG 94 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~ 94 (228)
.|..+|++++|+|++++|++|+.|+.|++||+.+++ ....+. .| ...|.+++|+|++++|++++.||.|++||+
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~---~h-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK---EH-NGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE---CC-SSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec---CC-CCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 488999999999999999999999999999999886 444333 23 789999999999999999999999999999
Q ss_pred CCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee---EEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370 95 VSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL---VKQYLGATHTQLRFQAVFNDTEEFVLSI 171 (228)
Q Consensus 95 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
++++.........+...+.+++|+|++++|++++.|+.|++||++.++. ...+. ..+...+.++.|+|++.+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~ 160 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK-KPIRSTVLSLDWHPNSVLLAAG 160 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC-TTCCSCEEEEEECTTSSEEEEE
T ss_pred CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeee-cccCCCeeEEEEcCCCCEEEEE
Confidence 9887666655444478999999999999999999999999999998763 22222 2357789999999999988886
Q ss_pred eCCCCeEEEEEcC------------------CcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 172 DEPSNEIVIWDAL------------------TAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 172 ~~~d~~i~i~d~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+. |+.|++||++ .++....+ ..|...|.+++|+|++++|++++.||.|++||+.
T Consensus 161 ~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 232 (372)
T 1k8k_C 161 SC-DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES-SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 232 (372)
T ss_dssp ET-TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred cC-CCCEEEEEcccccccccccccccccccchhhheEec-CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 66 7999999954 56666666 6899999999999999999999999999999974
No 69
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-37 Score=233.11 Aligned_cols=222 Identities=14% Similarity=0.279 Sum_probs=179.8
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEccc----ceEEeeeccceeeeccceeeEEeCCC
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNT----FQCYLSANVPEISVNGAINQVRYSST 76 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~ 76 (228)
|||+......+......|...|++++|+|++++|++|+.||.|++|++.. .+....+. .| ...|.+++|+|+
T Consensus 49 iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~---~h-~~~v~~~~~~~~ 124 (416)
T 2pm9_A 49 LWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFS---NH-SSSVKTVKFNAK 124 (416)
T ss_dssp EEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECC---CS-SSCCCEEEECSS
T ss_pred EEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhcc---CC-ccceEEEEEcCC
Confidence 47777655434444557899999999999999999999999999999987 23333332 23 789999999998
Q ss_pred -CCeEEEEecCCeEEEEeCCCCc------eeeEE-ecccccceeEEEEECCC-CCEEEEeeCCCeEEEEEccCCeeEEEE
Q 040370 77 -GGMYVTASKDGAIRLWDGVSAN------CVRSI-VGAHGTAEATSANFTKD-QRFVLSCGKDSTVKLWEVSSGRLVKQY 147 (228)
Q Consensus 77 -~~~l~~~~~dg~v~iwd~~~~~------~~~~~-~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~ 147 (228)
+++|++++.||.|++||+++++ ....+ ....+...+.+++|+|+ +.++++++.|+.|++||+++++.+..+
T Consensus 125 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 204 (416)
T 2pm9_A 125 QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHL 204 (416)
T ss_dssp STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEE
Confidence 8999999999999999999876 33222 11123778999999998 789999999999999999999988887
Q ss_pred eccee----eeeeeEEEECCCCcEEEEeeCCCC---eEEEEEcCCcc-eeEEeec-CCCCCcEEEEeCC-CCcEEEEecC
Q 040370 148 LGATH----TQLRFQAVFNDTEEFVLSIDEPSN---EIVIWDALTAE-KVAKWSS-NHIGAPRWIEHSP-AEAAFITCGT 217 (228)
Q Consensus 148 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~d~---~i~i~d~~~~~-~~~~~~~-~~~~~v~~~~~~~-~~~~l~s~~~ 217 (228)
..+.. ...+.++.|+|++..++++++.|+ .|++||++++. ....+ . +|...|.+++|+| ++++|++++.
T Consensus 205 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~~l~s~~~ 283 (416)
T 2pm9_A 205 SYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTL-NQGHQKGILSLDWCHQDEHLLLSSGR 283 (416)
T ss_dssp CCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCC-CSCCSSCEEEEEECSSCSSCEEEEES
T ss_pred eccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEe-ecCccCceeEEEeCCCCCCeEEEEeC
Confidence 65321 677899999999865555555577 99999999874 44444 5 8999999999999 9999999999
Q ss_pred CCCEEEeeec
Q 040370 218 DRSVRFWKEI 227 (228)
Q Consensus 218 dg~i~vwd~~ 227 (228)
||.|++||+.
T Consensus 284 dg~v~~wd~~ 293 (416)
T 2pm9_A 284 DNTVLLWNPE 293 (416)
T ss_dssp SSEEEEECSS
T ss_pred CCCEEEeeCC
Confidence 9999999964
No 70
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=5.5e-37 Score=233.63 Aligned_cols=220 Identities=16% Similarity=0.211 Sum_probs=172.8
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM 79 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 79 (228)
|||+........++..+|...|++++|+| ++++|++|+.||+|++||++++....... ...+ ...+.+++|+|++++
T Consensus 146 lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~ 223 (435)
T 4e54_B 146 LWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFAS-SDTI-NIWFCSLDVSASSRM 223 (435)
T ss_dssp EECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEEC-CSSC-SCCCCCEEEETTTTE
T ss_pred EEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEec-cCCC-CccEEEEEECCCCCE
Confidence 68888777666777779999999999998 78999999999999999998765433222 2112 456889999999999
Q ss_pred EEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCC-EEEEeeCCCeEEEEEccCCeeEEEEe-cceeeeeee
Q 040370 80 YVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR-FVLSCGKDSTVKLWEVSSGRLVKQYL-GATHTQLRF 157 (228)
Q Consensus 80 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~ 157 (228)
|++|+.||.|++||++. +.+..+..| ...|.+++|+|++. ++++++.|+.|++||+++.+....+. ...|...+.
T Consensus 224 l~~g~~dg~i~~wd~~~-~~~~~~~~h--~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~ 300 (435)
T 4e54_B 224 VVTGDNVGNVILLNMDG-KELWNLRMH--KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVN 300 (435)
T ss_dssp EEEECSSSBEEEEESSS-CBCCCSBCC--SSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEE
T ss_pred EEEEeCCCcEeeeccCc-ceeEEEecc--cceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeecccccc
Confidence 99999999999999864 455556555 77899999999876 78899999999999998876544332 233677888
Q ss_pred EEEECCCCcEEEEeeCCCCeEEEEEcCCccee------------------------------------------------
Q 040370 158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKV------------------------------------------------ 189 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~------------------------------------------------ 189 (228)
+++|+|++.++++++. |+.|++||+++++..
T Consensus 301 ~~~~spdg~~l~s~~~-D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 379 (435)
T 4e54_B 301 AACFSPDGARLLTTDQ-KSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRT 379 (435)
T ss_dssp ECCBCTTSSEEEEEES-SSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCC
T ss_pred ceeECCCCCeeEEEcC-CCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCE
Confidence 9999999999888766 799999988654321
Q ss_pred ------------EEeecCCCCCcEEE-EeCCCCcEEEEecCCCCEEEeeec
Q 040370 190 ------------AKWSSNHIGAPRWI-EHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 190 ------------~~~~~~~~~~v~~~-~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
..+..+|...|.++ +|+|++++|++|+ |+.|+|||+.
T Consensus 380 i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~ 429 (435)
T 4e54_B 380 IDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQ 429 (435)
T ss_dssp EEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC
T ss_pred EEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECC
Confidence 11112466667776 6999999999876 8899999974
No 71
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-36 Score=243.86 Aligned_cols=204 Identities=13% Similarity=0.158 Sum_probs=172.0
Q ss_pred EEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEE
Q 040370 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLW 92 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw 92 (228)
....+|...|++++|+|++++||+|+.||.|++|+....+...... + ...|.+++|+| +++|++++.|+.|++|
T Consensus 11 ~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~----~-~~~V~~l~fsp-g~~L~S~s~D~~v~lW 84 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE----D-RSAIKEMRFVK-GIYLVVINAKDTVYVL 84 (902)
T ss_dssp EEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS----S-CCCEEEEEEET-TTEEEEEETTCEEEEE
T ss_pred ccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC----C-CCCEEEEEEcC-CCEEEEEECcCeEEEE
Confidence 3445899999999999999999999999999999998876544322 2 67899999999 8899999999999999
Q ss_pred eCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEE-E--------ecceeeeeeeEEEECC
Q 040370 93 DGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQ-Y--------LGATHTQLRFQAVFND 163 (228)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~--------~~~~~~~~~~~~~~~~ 163 (228)
|+++++.+..+. + ...|++++|+|+++++++|+.||.|++||+++++.... + ....|...+.+++|+|
T Consensus 85 d~~~~~~~~~~~-~--~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp 161 (902)
T 2oaj_A 85 SLYSQKVLTTVF-V--PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP 161 (902)
T ss_dssp ETTTCSEEEEEE-C--SSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred ECCCCcEEEEEc-C--CCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEcc
Confidence 999999888775 2 56899999999999999999999999999998775311 1 1123667899999999
Q ss_pred CCcEEEEeeCCCCeEEEEEcCCcceeEEeecCC------------------CCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 164 TEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNH------------------IGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 164 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
++...+++++.|+.| +||+++++....+ ..| ...|.+++|+|++++|++++.||.|++||
T Consensus 162 ~~~~~l~~g~~dg~v-lWd~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd 239 (902)
T 2oaj_A 162 RDIGTVLISYEYVTL-TYSLVENEIKQSF-IYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWD 239 (902)
T ss_dssp TEEEEEEEECSSCEE-EEETTTTEEEEEE-CCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCCCEEEEEeCCCcE-EEECCCCceEEEE-ecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Confidence 865555556668999 9999999887776 333 57799999999999999999999999999
Q ss_pred ec
Q 040370 226 EI 227 (228)
Q Consensus 226 ~~ 227 (228)
+.
T Consensus 240 ~~ 241 (902)
T 2oaj_A 240 AN 241 (902)
T ss_dssp TT
T ss_pred CC
Confidence 73
No 72
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=7.7e-36 Score=224.90 Aligned_cols=210 Identities=17% Similarity=0.286 Sum_probs=176.1
Q ss_pred EEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccce---------eeeccceeeEEeCC-CCCeEE
Q 040370 13 FRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE---------ISVNGAINQVRYSS-TGGMYV 81 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~---------~~~~~~i~~~~~~~-~~~~l~ 81 (228)
..+.+|..+|++++|+| ++++|++|+.||.|++||+.+++......... ..|...|.+++|+| ++++|+
T Consensus 37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 116 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116 (408)
T ss_dssp EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence 34446999999999999 99999999999999999999876433332111 11488999999999 778999
Q ss_pred EEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCC---CCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeE
Q 040370 82 TASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD---QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQ 158 (228)
Q Consensus 82 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 158 (228)
+++.||.|++||+++++....+.. ...+.++.++|. +.++++++.|+.|++||+++++.+..+.. +...+.+
T Consensus 117 s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~v~~ 191 (408)
T 4a11_B 117 SSSFDKTLKVWDTNTLQTADVFNF---EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG--HRQEILA 191 (408)
T ss_dssp EEETTSEEEEEETTTTEEEEEEEC---SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC--CCSCEEE
T ss_pred EEeCCCeEEEeeCCCCccceeccC---CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC--CCCcEEE
Confidence 999999999999999988887764 567889999884 44999999999999999999988888876 6778899
Q ss_pred EEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee---------------cCCCCCcEEEEeCCCCcEEEEecCCCCEEE
Q 040370 159 AVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS---------------SNHIGAPRWIEHSPAEAAFITCGTDRSVRF 223 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v 223 (228)
+.|+|++.+++++++.||.|++||++++....... ..|...|.+++|+|++++|++++.||.|++
T Consensus 192 ~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 271 (408)
T 4a11_B 192 VSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRL 271 (408)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEE
Confidence 99999999766556668999999998876332221 468899999999999999999999999999
Q ss_pred eeec
Q 040370 224 WKEI 227 (228)
Q Consensus 224 wd~~ 227 (228)
||+.
T Consensus 272 wd~~ 275 (408)
T 4a11_B 272 WNSS 275 (408)
T ss_dssp EETT
T ss_pred EECC
Confidence 9974
No 73
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-36 Score=228.74 Aligned_cols=224 Identities=10% Similarity=0.122 Sum_probs=174.5
Q ss_pred CCcCCc---cccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcc---cceEEeeeccce--------eeecc
Q 040370 1 FFDFSK---ATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVN---TFQCYLSANVPE--------ISVNG 66 (228)
Q Consensus 1 iwd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~---~~~~~~~~~~~~--------~~~~~ 66 (228)
|||+.. ....+.....+|..+|.+++|+|++++|++|+.||.|++||++ +++......... ..+..
T Consensus 90 vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 169 (437)
T 3gre_A 90 IWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNE 169 (437)
T ss_dssp EEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCC
T ss_pred EeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCccccc
Confidence 466654 2222223334699999999999999999999999999999995 443332221110 00245
Q ss_pred ceeeEE--eCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeE
Q 040370 67 AINQVR--YSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLV 144 (228)
Q Consensus 67 ~i~~~~--~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 144 (228)
.+.++. ++|+++++++|+.||.|++||+++++.+..+..+.+...|.+++|+|++++|++|+.||.|++||+++++.+
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 249 (437)
T 3gre_A 170 YAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLI 249 (437)
T ss_dssp CEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE
T ss_pred CceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEE
Confidence 666776 567899999999999999999999999999987434789999999999999999999999999999999988
Q ss_pred EEEecceeeeeeeEEEECC----CCcEEEEeeCCCCeEEEEEcCCcceeEEeec-------------------------C
Q 040370 145 KQYLGATHTQLRFQAVFND----TEEFVLSIDEPSNEIVIWDALTAEKVAKWSS-------------------------N 195 (228)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-------------------------~ 195 (228)
..+... +...+.++.++| ++.++++ ++.|+.|++||+++++....+.. .
T Consensus 250 ~~~~~~-~~~~v~~~~~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 327 (437)
T 3gre_A 250 RSWSFG-DHAPITHVEVCQFYGKNSVIVVG-GSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIR 327 (437)
T ss_dssp EEEBCT-TCEEEEEEEECTTTCTTEEEEEE-ESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCC
T ss_pred EEEecC-CCCceEEEEeccccCCCccEEEE-EcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccc
Confidence 877522 455788886654 4556666 55589999999999987776631 1
Q ss_pred CCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 196 HIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 196 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
|...|.+++|+ ++++|++|+.||.|++||+.
T Consensus 328 ~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 328 SLNALSTISVS-NDKILLTDEATSSIVMFSLN 358 (437)
T ss_dssp SGGGGCCEEEE-TTEEEEEEGGGTEEEEEETT
T ss_pred cCCceEEEEEC-CceEEEecCCCCeEEEEECC
Confidence 66678889998 77999999999999999964
No 74
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.6e-36 Score=223.74 Aligned_cols=216 Identities=16% Similarity=0.186 Sum_probs=174.0
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM 79 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 79 (228)
|||+........+...+|...|.+++|+| ++++|++++.|+.|++||+... ..........+ ...|.+++|+|++++
T Consensus 100 iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~ 177 (383)
T 3ei3_B 100 LWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSW-DYWYCCVDVSVSRQM 177 (383)
T ss_dssp EEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-EEEEEECCCCS-SCCEEEEEEETTTTE
T ss_pred EEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCC-CCCeEEEEECCCCCE
Confidence 57887666555555557999999999999 7899999999999999999864 33333333222 578999999999999
Q ss_pred EEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCC-EEEEeeCCCeEEEEEccC----CeeEEEEecceeee
Q 040370 80 YVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR-FVLSCGKDSTVKLWEVSS----GRLVKQYLGATHTQ 154 (228)
Q Consensus 80 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~wd~~~----~~~~~~~~~~~~~~ 154 (228)
|++|+.||.|++||+ +++.+..+..+ ...|.+++|+|+++ ++++++.|+.|++||+++ +..+..+ . +..
T Consensus 178 l~~~~~d~~i~i~d~-~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~--~~~ 251 (383)
T 3ei3_B 178 LATGDSTGRLLLLGL-DGHEIFKEKLH--KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-P--HEK 251 (383)
T ss_dssp EEEEETTSEEEEEET-TSCEEEEEECS--SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-E--CSS
T ss_pred EEEECCCCCEEEEEC-CCCEEEEeccC--CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-c--CCC
Confidence 999999999999999 57777777765 77999999999998 999999999999999998 5555555 2 677
Q ss_pred eeeEEEECC-CCcEEEEeeCCCCeEEEEEcCCcceeEEeec------CCC----------CCcEEEEeCCCCcEEEEecC
Q 040370 155 LRFQAVFND-TEEFVLSIDEPSNEIVIWDALTAEKVAKWSS------NHI----------GAPRWIEHSPAEAAFITCGT 217 (228)
Q Consensus 155 ~~~~~~~~~-~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~------~~~----------~~v~~~~~~~~~~~l~s~~~ 217 (228)
.+.++.|+| ++.++++++. |+.|++||+++++....+.. .|. +.+..++|+|++++ +++.
T Consensus 252 ~v~~~~~s~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~ 328 (383)
T 3ei3_B 252 PVNAAYFNPTDSTKLLTTDQ-RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLND 328 (383)
T ss_dssp CEEEEEECTTTSCEEEEEES-SSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTC
T ss_pred ceEEEEEcCCCCCEEEEEcC-CCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCC
Confidence 899999999 9998888766 79999999998877665521 122 33444667777766 7889
Q ss_pred CCCEEEeeec
Q 040370 218 DRSVRFWKEI 227 (228)
Q Consensus 218 dg~i~vwd~~ 227 (228)
||.|++||+.
T Consensus 329 d~~i~iwd~~ 338 (383)
T 3ei3_B 329 KRTIDIYDAN 338 (383)
T ss_dssp CCCEEEEETT
T ss_pred CCeEEEEecC
Confidence 9999999964
No 75
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.3e-36 Score=222.17 Aligned_cols=218 Identities=16% Similarity=0.295 Sum_probs=176.7
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCC---CCEEEEecCCCeEEEEEcccce-EEeeeccceeeeccceeeEE----
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPS---GDFLLAGTDHPIAHLYDVNTFQ-CYLSANVPEISVNGAINQVR---- 72 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~i~~~~---- 72 (228)
|||+....... ....+|..+|.+++|+|+ +++|++|+.||.|++||+.+++ ....+. .| ...|.+++
T Consensus 48 iw~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~-~~~v~~~~~~~~ 122 (357)
T 3i2n_A 48 LYEIQHGDLKL-LREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVK---GH-KEIINAIDGIGG 122 (357)
T ss_dssp EEEECSSSEEE-EEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEEC---CC-SSCEEEEEEESG
T ss_pred EEeCCCCcccc-eeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEE---ec-ccceEEEeeccc
Confidence 47777554332 333489999999999998 6999999999999999999876 444333 23 78899995
Q ss_pred --eCCCCCeEEEEecCCeEEEEeCCCCc-eeeEEecccc--cceeEEEE----ECCCCCEEEEeeCCCeEEEEEccCCee
Q 040370 73 --YSSTGGMYVTASKDGAIRLWDGVSAN-CVRSIVGAHG--TAEATSAN----FTKDQRFVLSCGKDSTVKLWEVSSGRL 143 (228)
Q Consensus 73 --~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~--~~~i~~~~----~~~~~~~l~~~~~d~~i~~wd~~~~~~ 143 (228)
|+|++++|++++.||.|++||+++++ ....+..+.. ...+.+++ |+|+++++++++.|+.|++||+++++.
T Consensus 123 ~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 202 (357)
T 3i2n_A 123 LGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL 202 (357)
T ss_dssp GGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE
T ss_pred cccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce
Confidence 57899999999999999999999887 6666655422 34788888 788999999999999999999999887
Q ss_pred EEEEecceeeeeeeEEEECC---CCcEEEEeeCCCCeEEEEEcCCcceeEEee----cCCCCCcEEEEeCCCCc-EEEEe
Q 040370 144 VKQYLGATHTQLRFQAVFND---TEEFVLSIDEPSNEIVIWDALTAEKVAKWS----SNHIGAPRWIEHSPAEA-AFITC 215 (228)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~-~l~s~ 215 (228)
..... +...+..+.|+| ++.++++++. |+.|++||+++++....+. .+|...|.+++|+|+++ +|+++
T Consensus 203 ~~~~~---~~~~v~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 278 (357)
T 3i2n_A 203 RWETN---IKNGVCSLEFDRKDISMNKLVATSL-EGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTA 278 (357)
T ss_dssp EEEEE---CSSCEEEEEESCSSSSCCEEEEEES-TTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred eeecC---CCCceEEEEcCCCCCCCCEEEEECC-CCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEE
Confidence 54432 567889999999 8888888665 7999999998877654442 38999999999999998 89999
Q ss_pred cCCCCEEEeeec
Q 040370 216 GTDRSVRFWKEI 227 (228)
Q Consensus 216 ~~dg~i~vwd~~ 227 (228)
+.||.|++||+.
T Consensus 279 ~~dg~i~iwd~~ 290 (357)
T 3i2n_A 279 GGAGGLHLWKYE 290 (357)
T ss_dssp ETTSEEEEEEEE
T ss_pred eCCCcEEEeecC
Confidence 999999999974
No 76
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.8e-36 Score=225.36 Aligned_cols=219 Identities=19% Similarity=0.303 Sum_probs=176.7
Q ss_pred CCcCCccccceeEEEee---cCcceEEEEEeCC----CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEe
Q 040370 1 FFDFSKATAKRAFRVIQ---DTHNVRSVSFHPS----GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRY 73 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~----~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~ 73 (228)
|||+........+.... |...|.+++|+|+ +.+|++|+.||.|++||+.+++....+.. | ...|.+++|
T Consensus 48 vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~-~~~i~~~~~ 123 (366)
T 3k26_A 48 LYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVG---H-GNAINELKF 123 (366)
T ss_dssp EEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEES---C-CSCEEEEEE
T ss_pred EEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecC---C-CCcEEEEEE
Confidence 47776554433333322 6688999999998 67999999999999999999887665542 2 789999999
Q ss_pred CC-CCCeEEEEecCCeEEEEeCCCCceeeEEec-ccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEec--
Q 040370 74 SS-TGGMYVTASKDGAIRLWDGVSANCVRSIVG-AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLG-- 149 (228)
Q Consensus 74 ~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-- 149 (228)
+| ++++|++|+.||.|++||+++++....+.. ..+...|.+++|+|++++|++++.|+.|++||+++++....+..
T Consensus 124 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 203 (366)
T 3k26_A 124 HPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY 203 (366)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeE
Confidence 99 899999999999999999999988887731 12378999999999999999999999999999987654432211
Q ss_pred ------------------------ceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcce--------------eEE
Q 040370 150 ------------------------ATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK--------------VAK 191 (228)
Q Consensus 150 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--------------~~~ 191 (228)
..+...+.++.|+ +.++++++. |+.|++||+++++. +..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 280 (366)
T 3k26_A 204 DYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC-ENAIVCWKPGKMEDDIDKIKPSESNVTILGR 280 (366)
T ss_dssp TCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS-SSEEEEEEESSTTCCGGGCCTTCCCEEEEEE
T ss_pred EecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEec-CCEEEEEeCCCccccccccccCCcchheecc
Confidence 1156677888887 556666554 89999999988754 444
Q ss_pred eecCCCCCcEEEEeCCC--CcEEEEecCCCCEEEeeec
Q 040370 192 WSSNHIGAPRWIEHSPA--EAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 192 ~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~ 227 (228)
+ ..|...|.+++|+|+ +++|++++.||.|++||+.
T Consensus 281 ~-~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~ 317 (366)
T 3k26_A 281 F-DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLE 317 (366)
T ss_dssp E-ECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred c-cccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence 4 678999999999999 9999999999999999974
No 77
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.6e-35 Score=238.25 Aligned_cols=208 Identities=17% Similarity=0.264 Sum_probs=183.3
Q ss_pred eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEE
Q 040370 11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIR 90 (228)
Q Consensus 11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 90 (228)
....+.+|...|++++|+|++++|++|+.||.|++||+.+++....+.. | ...|.+++|+|++++|++++.||.|+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~---~-~~~v~~~~~s~~~~~l~~~~~dg~i~ 80 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQV---T-ETPVRAGKFIARKNWIIVGSDDFRIR 80 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC---C-SSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEec---C-CCcEEEEEEeCCCCEEEEEeCCCeEE
Confidence 4456678999999999999999999999999999999999887766553 2 78999999999999999999999999
Q ss_pred EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC-eeEEEEecceeeeeeeEEEECC-CCcEE
Q 040370 91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG-RLVKQYLGATHTQLRFQAVFND-TEEFV 168 (228)
Q Consensus 91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 168 (228)
+||+.+++.+..+..| ...|.+++|+|++++|++++.||.|++||++++ .....+.. +...+.++.|+| ++..+
T Consensus 81 vw~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l 156 (814)
T 3mkq_A 81 VFNYNTGEKVVDFEAH--PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG--HEHFVMCVAFNPKDPSTF 156 (814)
T ss_dssp EEETTTCCEEEEEECC--SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC--CSSCEEEEEEETTEEEEE
T ss_pred EEECCCCcEEEEEecC--CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC--CCCcEEEEEEEcCCCCEE
Confidence 9999999999888776 778999999999999999999999999999987 55566655 667789999999 66666
Q ss_pred EEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC--CCcEEEEecCCCCEEEeeec
Q 040370 169 LSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP--AEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 169 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~ 227 (228)
++++. ||.|++||++++.....+...+...+.+++|+| ++.+|++++.||.|++||+.
T Consensus 157 ~~~~~-dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 216 (814)
T 3mkq_A 157 ASGCL-DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216 (814)
T ss_dssp EEEET-TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT
T ss_pred EEEeC-CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 66554 899999999998888887666668999999999 99999999999999999963
No 78
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.1e-35 Score=222.12 Aligned_cols=225 Identities=13% Similarity=0.187 Sum_probs=181.0
Q ss_pred CCcCCccccc---eeEEEeec-----CcceEEEEEe----CCCCE-EEEecCCCeEEEEEccc------ceEEe-----e
Q 040370 1 FFDFSKATAK---RAFRVIQD-----THNVRSVSFH----PSGDF-LLAGTDHPIAHLYDVNT------FQCYL-----S 56 (228)
Q Consensus 1 iwd~~~~~~~---~~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~d~~i~vw~~~~------~~~~~-----~ 56 (228)
+||+...... ....+..| ...|.+++|+ |++++ |++++.||.|++||+.+ ++... .
T Consensus 95 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 174 (397)
T 1sq9_A 95 FYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLE 174 (397)
T ss_dssp EEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEE
T ss_pred EEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcce
Confidence 3665543321 14445567 5899999999 99999 99999999999999988 55433 2
Q ss_pred ecc---ceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEec---c-cccceeEEEEECCCCCEEEEeeC
Q 040370 57 ANV---PEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVG---A-HGTAEATSANFTKDQRFVLSCGK 129 (228)
Q Consensus 57 ~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~-~~~~~i~~~~~~~~~~~l~~~~~ 129 (228)
+.. ....+...|.+++|+|++ ++++++.||.|++||+++++.+..+.. + .....+.+++|+|++++|++++.
T Consensus 175 ~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~ 253 (397)
T 1sq9_A 175 LQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD 253 (397)
T ss_dssp EEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE
T ss_pred eeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEec
Confidence 210 001137789999999999 999999999999999999988888876 3 01568999999999999999999
Q ss_pred C---CeEEEEEccCCeeEEEEecce-----------eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec-
Q 040370 130 D---STVKLWEVSSGRLVKQYLGAT-----------HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS- 194 (228)
Q Consensus 130 d---~~i~~wd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~- 194 (228)
| +.|++||+++++.+..+.... +...+..+.|+|++.++++++. |+.|++||+++++.+..+..
T Consensus 254 d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~ 332 (397)
T 1sq9_A 254 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW-DGKLRFWDVKTKERITTLNMH 332 (397)
T ss_dssp ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET-TSEEEEEETTTTEEEEEEECC
T ss_pred CCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC-CCeEEEEEcCCCceeEEEecc
Confidence 9 999999999998888876521 5677899999999999888765 89999999999998888831
Q ss_pred ----CC---------------CCCcEEEEeCCCC----------cEEEEecCCCCEEEeeec
Q 040370 195 ----NH---------------IGAPRWIEHSPAE----------AAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 195 ----~~---------------~~~v~~~~~~~~~----------~~l~s~~~dg~i~vwd~~ 227 (228)
.| ..+|.+++|+|++ ++|++++.||.|++||+.
T Consensus 333 ~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 333 CDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp GGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred cCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 56 8999999999998 799999999999999974
No 79
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-36 Score=234.22 Aligned_cols=208 Identities=11% Similarity=0.088 Sum_probs=167.1
Q ss_pred EEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeE--EeCCCC-CeEEEEecCCeE
Q 040370 13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQV--RYSSTG-GMYVTASKDGAI 89 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~dg~v 89 (228)
..+.+|...|++++|+|+ ..|++|+.||+|++||++++.... .....| ...|.++ .|+|++ ++|++|+.|++|
T Consensus 260 ~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~--~~~~~H-~~~V~sv~~~~s~~g~~~laS~S~D~tv 335 (524)
T 2j04_B 260 LTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPS--FYDQVH-DSYILSVSTAYSDFEDTVVSTVAVDGYF 335 (524)
T ss_dssp EEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCS--EEEECS-SSCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred EEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCce--EEeecc-cccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence 456689999999999986 489999999999999998763211 111223 8899999 578887 899999999999
Q ss_pred EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEE
Q 040370 90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVL 169 (228)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (228)
++||+++++....+..+.....+.+++|+|+++.+++++.|++|++||++++..+..+.+ |...+.+++|+|++++++
T Consensus 336 klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g--H~~~V~sva~Sp~g~~l~ 413 (524)
T 2j04_B 336 YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS--RETTITAIGVSRLHPMVL 413 (524)
T ss_dssp EEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE--CSSCEEEEECCSSCCBCE
T ss_pred EEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec--CCCceEEEEeCCCCCeEE
Confidence 999999988877776653234578999999999999999999999999999888777776 778899999999999988
Q ss_pred EeeCCCCeEEEEEcCCc-----c---------e------------------------------eEEeecCCCCCcEEEEe
Q 040370 170 SIDEPSNEIVIWDALTA-----E---------K------------------------------VAKWSSNHIGAPRWIEH 205 (228)
Q Consensus 170 ~~~~~d~~i~i~d~~~~-----~---------~------------------------------~~~~~~~~~~~v~~~~~ 205 (228)
+++. |++|++||+... + . +.. ..+|...|.+++|
T Consensus 414 Sgs~-Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~-l~gh~~~V~~Vaf 491 (524)
T 2j04_B 414 AGSA-DGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAK-IDAHGINITCTKW 491 (524)
T ss_dssp EEET-TTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC--------------CCCSCCCEEE
T ss_pred EEEC-CCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceee-ecCCCceEEEEEC
Confidence 7655 899999985321 0 0 011 1358889999999
Q ss_pred CCCCc---EEEEecCCCCEEEeeecC
Q 040370 206 SPAEA---AFITCGTDRSVRFWKEIL 228 (228)
Q Consensus 206 ~~~~~---~l~s~~~dg~i~vwd~~l 228 (228)
+|++. .+++|+.||.|+||++.+
T Consensus 492 sp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 492 NETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred CCCCCccHHHHhhccCceEEEEEccc
Confidence 99854 999999999999999853
No 80
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.2e-35 Score=219.80 Aligned_cols=214 Identities=15% Similarity=0.261 Sum_probs=178.1
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEccc-ceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNT-FQCYLSANVPEISVNGAINQVRYSSTGGM 79 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 79 (228)
|||+... +....+.+|...|.+++| ++++|++|+.||.|++||+.. ........ .| ...|.+++|+|++++
T Consensus 160 iwd~~~~--~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~-~~~v~~~~~~~~~~~ 231 (401)
T 4aez_A 160 IYDVESQ--TKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQ---GH-SSEVCGLAWRSDGLQ 231 (401)
T ss_dssp EEETTTC--CEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEE---CC-SSCEEEEEECTTSSE
T ss_pred EEECcCC--eEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEc---CC-CCCeeEEEEcCCCCE
Confidence 4676643 344555689999999999 467999999999999999984 33333332 23 789999999999999
Q ss_pred EEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCC-EEEEee--CCCeEEEEEccCCeeEEEEecceeeeee
Q 040370 80 YVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR-FVLSCG--KDSTVKLWEVSSGRLVKQYLGATHTQLR 156 (228)
Q Consensus 80 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 156 (228)
|++|+.||.|++||+++++....+..+ ...|.+++|+|++. .+++++ .|+.|++||+++++.+..+. +...+
T Consensus 232 l~s~~~d~~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~---~~~~v 306 (401)
T 4aez_A 232 LASGGNDNVVQIWDARSSIPKFTKTNH--NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD---AGSQV 306 (401)
T ss_dssp EEEEETTSCEEEEETTCSSEEEEECCC--SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE---CSSCE
T ss_pred EEEEeCCCeEEEccCCCCCccEEecCC--cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe---CCCcE
Confidence 999999999999999999888887765 77899999999764 555654 79999999999998888875 45678
Q ss_pred eEEEECCCCcEEEEe-eCCCCeEEEEEcCCcceeEEe-ecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 157 FQAVFNDTEEFVLSI-DEPSNEIVIWDALTAEKVAKW-SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
..+.|+|++.+++++ |..||.|++||+++++..... ..+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 307 ~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 307 TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp EEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred EEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 999999999999886 446899999999987655443 25899999999999999999999999999999974
No 81
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-35 Score=239.93 Aligned_cols=222 Identities=18% Similarity=0.258 Sum_probs=179.0
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCC--CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC--
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPS--GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-- 76 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 76 (228)
|||+..........+.+|..+|++++|+|+ +++|++|+.||.|++||+.+++....... ..| ...|.+++|+|+
T Consensus 35 vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-~~h-~~~V~~v~~sp~~~ 112 (753)
T 3jro_A 35 IFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVH-SASVNSVQWAPHEY 112 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCC-SSCEEEEEECCGGG
T ss_pred EEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccc-cCC-CCCeEEEEECCCCC
Confidence 477765555666677789999999999987 99999999999999999998863222211 123 789999999999
Q ss_pred CCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC-------------CCCEEEEeeCCCeEEEEEccCCe-
Q 040370 77 GGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-------------DQRFVLSCGKDSTVKLWEVSSGR- 142 (228)
Q Consensus 77 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~~~d~~i~~wd~~~~~- 142 (228)
++.+++|+.||.|++||++++..........+...|.+++|+| ++.++++|+.||.|++||++++.
T Consensus 113 ~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~ 192 (753)
T 3jro_A 113 GPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 192 (753)
T ss_dssp CSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT
T ss_pred CCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc
Confidence 9999999999999999999874333222223378999999999 58999999999999999998873
Q ss_pred ---eEEEEecceeeeeeeEEEECCC---CcEEEEeeCCCCeEEEEEcCCcceeE----EeecCCCCCcEEEEeCCCCcEE
Q 040370 143 ---LVKQYLGATHTQLRFQAVFNDT---EEFVLSIDEPSNEIVIWDALTAEKVA----KWSSNHIGAPRWIEHSPAEAAF 212 (228)
Q Consensus 143 ---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l 212 (228)
....+.. |...+.++.|+|+ +.++++++. ||.|++||+++++... .....|...|.+++|+|++++|
T Consensus 193 ~~~~~~~~~~--h~~~V~~l~~sp~~~~~~~l~s~s~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l 269 (753)
T 3jro_A 193 TYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQ-DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL 269 (753)
T ss_dssp EEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEES-SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCE
T ss_pred cceeeeeecC--CCCcEEEEEeccCCCCCCEEEEEec-CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEE
Confidence 3444444 6778999999999 777777665 8999999998874211 1114588899999999999999
Q ss_pred EEecCCCCEEEeeec
Q 040370 213 ITCGTDRSVRFWKEI 227 (228)
Q Consensus 213 ~s~~~dg~i~vwd~~ 227 (228)
++++.||.|++||+.
T Consensus 270 ~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 270 ALSGGDNKVTLWKEN 284 (753)
T ss_dssp EEECSSSCEECCBCC
T ss_pred EEEcCCCEEEEEecC
Confidence 999999999999974
No 82
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4e-35 Score=238.63 Aligned_cols=216 Identities=16% Similarity=0.261 Sum_probs=185.8
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
|||+... .....+..|..+|++++|+|++++|++|+.||.|++||+.+++....+.. | ...|++++|+|++++|
T Consensus 39 iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~---~-~~~v~~~~~s~~~~~l 112 (814)
T 3mkq_A 39 IWNYETQ--VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA---H-PDYIRSIAVHPTKPYV 112 (814)
T ss_dssp EEETTTT--EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC---C-SSCEEEEEECSSSSEE
T ss_pred EEECCCC--ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEec---C-CCCEEEEEEeCCCCEE
Confidence 4776643 34455567999999999999999999999999999999999887665542 2 7889999999999999
Q ss_pred EEEecCCeEEEEeCCCC-ceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeE
Q 040370 81 VTASKDGAIRLWDGVSA-NCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQ 158 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 158 (228)
++++.||.|++||++++ .....+..+ ...+.+++|+| +++.+++++.||.|++||+++++....+..+ +...+..
T Consensus 113 ~~~~~dg~i~vw~~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~~~v~~ 189 (814)
T 3mkq_A 113 LSGSDDLTVKLWNWENNWALEQTFEGH--EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG-QERGVNY 189 (814)
T ss_dssp EEEETTSEEEEEEGGGTSEEEEEEECC--SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC-CTTCCCE
T ss_pred EEEcCCCEEEEEECCCCceEEEEEcCC--CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC-CCCCEEE
Confidence 99999999999999987 555555554 67899999999 8899999999999999999988777776543 3366788
Q ss_pred EEECC--CCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 159 AVFND--TEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 159 ~~~~~--~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+.|+| ++.++++++. |+.|++||+++++.+..+ .+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 190 ~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~ 258 (814)
T 3mkq_A 190 VDYYPLPDKPYMITASD-DLTIKIWDYQTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (814)
T ss_dssp EEECCSTTCCEEEEECT-TSEEEEEETTTTEEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred EEEEECCCCCEEEEEeC-CCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 89998 8888887665 799999999999888877 6899999999999999999999999999999964
No 83
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=219.49 Aligned_cols=212 Identities=21% Similarity=0.368 Sum_probs=174.4
Q ss_pred ceeEEEeecCcceEEEEEeCCCC-EEEEecCCCeEEEEEc----ccce------EEeeeccc-eee-----eccceeeEE
Q 040370 10 KRAFRVIQDTHNVRSVSFHPSGD-FLLAGTDHPIAHLYDV----NTFQ------CYLSANVP-EIS-----VNGAINQVR 72 (228)
Q Consensus 10 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~----~~~~------~~~~~~~~-~~~-----~~~~i~~~~ 72 (228)
...+....|..+|++++|+|+++ +|++|+.||.|++|++ .+++ ....+... ..+ |...|++++
T Consensus 36 ~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (425)
T 1r5m_A 36 VKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLA 115 (425)
T ss_dssp CEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEE
T ss_pred hhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEE
Confidence 34555667889999999999999 9999999999999999 7776 23322221 111 367999999
Q ss_pred eCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecc--
Q 040370 73 YSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA-- 150 (228)
Q Consensus 73 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-- 150 (228)
|+|++++|++++.||.|++|| .+++....+..+ ...|.+++|+|++++|++++.|+.|++||+++++.+..+..+
T Consensus 116 ~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 192 (425)
T 1r5m_A 116 WSHDGNSIVTGVENGELRLWN-KTGALLNVLNFH--RAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKET 192 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCC--CSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--
T ss_pred EcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCC--CccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeecccc
Confidence 999999999999999999999 667777777765 779999999999999999999999999999887766544321
Q ss_pred ----------------------------------------------------eeeeeeeEEEECCCCcEEEEeeCCCCeE
Q 040370 151 ----------------------------------------------------THTQLRFQAVFNDTEEFVLSIDEPSNEI 178 (228)
Q Consensus 151 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i 178 (228)
.+...+..+.|+|++.++++++. |+.|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i 271 (425)
T 1r5m_A 193 GGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD-DGTL 271 (425)
T ss_dssp -------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET-TSCE
T ss_pred CccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC-CCEE
Confidence 13456778899999998888665 7999
Q ss_pred EEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 179 VIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 179 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
++||+++++....+ ..|...|.+++|+|++ ++++++.||.|++||+.
T Consensus 272 ~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~ 318 (425)
T 1r5m_A 272 RIWHGGNGNSQNCF-YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLK 318 (425)
T ss_dssp EEECSSSBSCSEEE-CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETT
T ss_pred EEEECCCCccceEe-cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECC
Confidence 99999999888887 6899999999999999 99999999999999963
No 84
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-35 Score=236.93 Aligned_cols=206 Identities=14% Similarity=0.198 Sum_probs=169.2
Q ss_pred EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccc--eEEeeeccceeeeccceeeEEeCCC--CCeEEEEecCCeE
Q 040370 14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTF--QCYLSANVPEISVNGAINQVRYSST--GGMYVTASKDGAI 89 (228)
Q Consensus 14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~v 89 (228)
.+.+|.++|++++|+|++++|++|+.||.|++||+.++ +....+. .| .+.|++++|+|+ +++|++|+.||.|
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~---~h-~~~V~~l~~s~~~~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT---GH-EGPVWRVDWAHPKFGTILASCSYDGKV 79 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC---CC-SSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc---CC-cCceEEEEecCCCCCCEEEEEeCCCeE
Confidence 34589999999999999999999999999999999844 3333332 33 889999999987 9999999999999
Q ss_pred EEEeCCCCc--eeeEEecccccceeEEEEECCC--CCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCC-
Q 040370 90 RLWDGVSAN--CVRSIVGAHGTAEATSANFTKD--QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT- 164 (228)
Q Consensus 90 ~iwd~~~~~--~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~- 164 (228)
++||+++++ ....+..+ ...|.+++|+|+ ++++++|+.||.|++||++++..........+...+.++.|+|.
T Consensus 80 ~vwd~~~~~~~~~~~~~~h--~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~ 157 (753)
T 3jro_A 80 LIWKEENGRWSQIAVHAVH--SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157 (753)
T ss_dssp EEEEEETTEEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC
T ss_pred EEEECCCCcccccccccCC--CCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcc
Confidence 999999887 44444444 789999999999 99999999999999999998744333333337778999999994
Q ss_pred ------------CcEEEEeeCCCCeEEEEEcCCcc----eeEEeecCCCCCcEEEEeCCC---CcEEEEecCCCCEEEee
Q 040370 165 ------------EEFVLSIDEPSNEIVIWDALTAE----KVAKWSSNHIGAPRWIEHSPA---EAAFITCGTDRSVRFWK 225 (228)
Q Consensus 165 ------------~~~~~~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~dg~i~vwd 225 (228)
+..+++++. ||.|++||++++. ....+ .+|..+|.+++|+|+ +.+|++++.||.|++||
T Consensus 158 ~~~~~~~~~~~d~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 158 IEEDGEHNGTKESRKFVTGGA-DNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp ---------CGGGCCEEEEET-TSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred cccccccccCCCCCEEEEEEC-CCeEEEEeccCCcccceeeeee-cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 677777655 8999999998874 33334 689999999999999 89999999999999999
Q ss_pred ec
Q 040370 226 EI 227 (228)
Q Consensus 226 ~~ 227 (228)
+.
T Consensus 236 ~~ 237 (753)
T 3jro_A 236 QD 237 (753)
T ss_dssp ES
T ss_pred CC
Confidence 74
No 85
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.5e-34 Score=215.84 Aligned_cols=218 Identities=15% Similarity=0.262 Sum_probs=179.4
Q ss_pred CCcCCccccceeEEEe-----------ecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccce
Q 040370 1 FFDFSKATAKRAFRVI-----------QDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAI 68 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~-----------~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i 68 (228)
|||+............ +|...|.+++|+| ++.+|++++.||.|++||+.+++....... ...+
T Consensus 70 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~ 144 (408)
T 4a11_B 70 LYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF-----EETV 144 (408)
T ss_dssp EEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC-----SSCE
T ss_pred EEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC-----CCce
Confidence 4777765554444322 3999999999999 788999999999999999999887665542 6778
Q ss_pred eeEEeCCC---CCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCC-EEEEeeCCCeEEEEEccCCe-e
Q 040370 69 NQVRYSST---GGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR-FVLSCGKDSTVKLWEVSSGR-L 143 (228)
Q Consensus 69 ~~~~~~~~---~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~-~ 143 (228)
.++.|+|. +.++++++.||.|++||+++++....+..+ ...|.+++|+|+++ .+++++.||.|++||++++. .
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~ 222 (408)
T 4a11_B 145 YSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGH--RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC 222 (408)
T ss_dssp EEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCC--CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC
T ss_pred eeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCC--CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc
Confidence 99999884 459999999999999999999988888765 77899999999988 58999999999999998765 2
Q ss_pred EEEEec-------------ceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcce----------------------
Q 040370 144 VKQYLG-------------ATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK---------------------- 188 (228)
Q Consensus 144 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~---------------------- 188 (228)
...+.. ..+...+..+.|+|++.++++++. |+.|++||+++++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (408)
T 4a11_B 223 LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT-DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC 301 (408)
T ss_dssp SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECC
T ss_pred cccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC-CCeEEEEECCCCccceeccccccccccccceeEEec
Confidence 333211 236678899999999999988766 79999999876542
Q ss_pred -------------------------eEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 189 -------------------------VAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 189 -------------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+..+ .+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 302 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 302 GCSSEFVFVPYGSTIAVYTVYSGEQITML-KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPS 364 (408)
T ss_dssp SSSSCEEEEEETTEEEEEETTTCCEEEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEEC
T ss_pred CCCceEEEEecCCEEEEEECcCCcceeee-ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCC
Confidence 2233 5799999999999999999999999999999975
No 86
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=5.2e-35 Score=210.61 Aligned_cols=199 Identities=9% Similarity=0.059 Sum_probs=142.8
Q ss_pred ceEEEEEeCC----CCEEEEecC--------------------CCeEEEEEcc-cceEEeeeccceeeeccceeeEEeCC
Q 040370 21 NVRSVSFHPS----GDFLLAGTD--------------------HPIAHLYDVN-TFQCYLSANVPEISVNGAINQVRYSS 75 (228)
Q Consensus 21 ~v~~~~~~~~----~~~l~~~~~--------------------d~~i~vw~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~ 75 (228)
.|++++++|+ ++.+++++. |+.|++|++. +++.+..... | ...++.++|+|
T Consensus 113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~---~-~~~v~~l~fs~ 188 (356)
T 2w18_A 113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFL---M-PPEETILTFAE 188 (356)
T ss_dssp EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEE---C-CCSSCEEEEEE
T ss_pred ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeecc---C-CCceeeEEeec
Confidence 6777888888 777776553 6777777773 3554443332 2 66778888888
Q ss_pred ---CCCeEEEEecCCeEEEEeCCCCceeeEEeccc-ccceeEEEEECCCCCEE------------EEeeCCCeEEEEEcc
Q 040370 76 ---TGGMYVTASKDGAIRLWDGVSANCVRSIVGAH-GTAEATSANFTKDQRFV------------LSCGKDSTVKLWEVS 139 (228)
Q Consensus 76 ---~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l------------~~~~~d~~i~~wd~~ 139 (228)
++..|++++.|++|+|||+++++.++.+..++ +...+.+++|+|++.++ ++|+.|++|++||..
T Consensus 189 ~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~ 268 (356)
T 2w18_A 189 VQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPK 268 (356)
T ss_dssp EETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETT
T ss_pred cCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECC
Confidence 67899999999999999999999999997653 23567888999999876 568889999999999
Q ss_pred CCeeEEEEec---ceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcE-EEEeCCCCcEEEEe
Q 040370 140 SGRLVKQYLG---ATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPR-WIEHSPAEAAFITC 215 (228)
Q Consensus 140 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~ 215 (228)
+++.+..+.. ..+........+ ++..+++ ++.|++|+|||+.+++.+.++ .+|...+. .++|+|+|++|++|
T Consensus 269 tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lAS-gS~DgTIkIWDl~tGk~l~tL-~gH~~~vvs~vafSPDG~~LaSG 344 (356)
T 2w18_A 269 TTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAA-ILTSGTIAIWDLLLGQCTALL-PPVSDQHWSFVKWSGTDSHLLAG 344 (356)
T ss_dssp TTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEE-EETTSCEEEEETTTCSEEEEE-CCC--CCCCEEEECSSSSEEEEE
T ss_pred CCEEEEEEEeeccCCCcceeEcccc--CCCEEEE-EcCCCcEEEEECCCCcEEEEe-cCCCCCeEEEEEECCCCCEEEEE
Confidence 9988765521 112222222222 2444454 556899999999999999988 67776655 68999999999999
Q ss_pred cCCCCEEEeeec
Q 040370 216 GTDRSVRFWKEI 227 (228)
Q Consensus 216 ~~dg~i~vwd~~ 227 (228)
+.|++|+|||+.
T Consensus 345 S~D~TIklWd~~ 356 (356)
T 2w18_A 345 QKDGNIFVYHYS 356 (356)
T ss_dssp CTTSCEEEEEEC
T ss_pred ECCCcEEEecCC
Confidence 999999999963
No 87
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.1e-35 Score=222.72 Aligned_cols=223 Identities=15% Similarity=0.224 Sum_probs=179.8
Q ss_pred CCcCCcccc-----ceeEEEeecCcceEEEEEeCCC-CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeC
Q 040370 1 FFDFSKATA-----KRAFRVIQDTHNVRSVSFHPSG-DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYS 74 (228)
Q Consensus 1 iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 74 (228)
|||+..... .....+.+|...|.+++|+|++ .+|++++.|+.|++||+.+++....+.. ..| ...|.+++|+
T Consensus 108 vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~-~~~v~~~~~~ 185 (402)
T 2aq5_A 108 VWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP-DVH-PDTIYSVDWS 185 (402)
T ss_dssp EEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT-TTC-CSCEEEEEEC
T ss_pred EEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec-CCC-CCceEEEEEC
Confidence 477765532 4456677899999999999998 6999999999999999999987766521 112 7889999999
Q ss_pred CCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEe---eCCCeEEEEEccCCeeEEEEecce
Q 040370 75 STGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC---GKDSTVKLWEVSSGRLVKQYLGAT 151 (228)
Q Consensus 75 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~d~~i~~wd~~~~~~~~~~~~~~ 151 (228)
|++++|++++.||.|++||+++++.+..+...+....+.++.|+|+++++++| +.|+.|++||+++++.........
T Consensus 186 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~ 265 (402)
T 2aq5_A 186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD 265 (402)
T ss_dssp TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC
T ss_pred CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc
Confidence 99999999999999999999999988888433334458899999999999999 799999999999876522222222
Q ss_pred eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcce-eEEee-cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 152 HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK-VAKWS-SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+...+..+.|+|++.+++++++.|+.|++||+.+++. +..+. ..|..++.+++|+|++.++++ .++.+++|++.
T Consensus 266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~ 341 (402)
T 2aq5_A 266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLH 341 (402)
T ss_dssp CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEE
T ss_pred CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcC
Confidence 5566889999999999988887789999999998874 33321 236789999999999998775 46699999963
No 88
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=6.6e-35 Score=221.86 Aligned_cols=207 Identities=18% Similarity=0.259 Sum_probs=170.6
Q ss_pred eEEEeecCcceEEEEEeCC-CCEEEEecCCCeEEEEEccc----------ceEEeeeccceeeeccceeeEEeCCCCC-e
Q 040370 12 AFRVIQDTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNT----------FQCYLSANVPEISVNGAINQVRYSSTGG-M 79 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~----------~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 79 (228)
......|.+.|++++|+|+ +.+|++++.+|.|++|++.+ ......+ .. |...|.+++|+|++. +
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~---~~-h~~~v~~l~~~~~~~~~ 196 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL---RG-HQKEGYGLSWNPNLNGY 196 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE---EC-CSSCCCCEEECTTSTTE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe---cC-CCCCeEEEEeCCCCCCe
Confidence 4556789999999999997 78999999999999999986 2222222 22 378899999999988 9
Q ss_pred EEEEecCCeEEEEeCCCCce-------eeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCC---eeEEEEe
Q 040370 80 YVTASKDGAIRLWDGVSANC-------VRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSG---RLVKQYL 148 (228)
Q Consensus 80 l~~~~~dg~v~iwd~~~~~~-------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~---~~~~~~~ 148 (228)
|++|+.||.|++||+.++.. ...+..| ...|.+++|+| ++.+|++++.|+.|++||++++ +.+..+.
T Consensus 197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~ 274 (430)
T 2xyi_A 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGH--TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD 274 (430)
T ss_dssp EEEECTTSCEEEEETTSCCBGGGEEECSEEECCC--SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE
T ss_pred EEEEeCCCeEEEEeCCCCCCCCceeccceeecCC--CCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee
Confidence 99999999999999987432 2334333 77899999999 7789999999999999999987 4555555
Q ss_pred cceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCc-ceeEEeecCCCCCcEEEEeCCCCc-EEEEecCCCCEEEeee
Q 040370 149 GATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA-EKVAKWSSNHIGAPRWIEHSPAEA-AFITCGTDRSVRFWKE 226 (228)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~ 226 (228)
. +...+.++.|+|++.+++++++.||.|++||+++. ..+..+ ..|...|.+++|+|+++ +|++++.||.|++||+
T Consensus 275 ~--~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~-~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~ 351 (430)
T 2xyi_A 275 A--HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF-ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351 (430)
T ss_dssp C--CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE-ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred c--CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe-ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence 4 67788999999999976666777999999999984 445555 68999999999999885 7999999999999997
Q ss_pred c
Q 040370 227 I 227 (228)
Q Consensus 227 ~ 227 (228)
.
T Consensus 352 ~ 352 (430)
T 2xyi_A 352 S 352 (430)
T ss_dssp G
T ss_pred C
Confidence 4
No 89
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=6.6e-35 Score=222.56 Aligned_cols=212 Identities=14% Similarity=0.174 Sum_probs=166.6
Q ss_pred eEEEeecC------------cceEEEEEeCCC--CEEEEecCCCeEEEEEcccceEEee---------------------
Q 040370 12 AFRVIQDT------------HNVRSVSFHPSG--DFLLAGTDHPIAHLYDVNTFQCYLS--------------------- 56 (228)
Q Consensus 12 ~~~~~~~~------------~~v~~~~~~~~~--~~l~~~~~d~~i~vw~~~~~~~~~~--------------------- 56 (228)
...+.+|. ..|++++|+|++ .+|++++.|+.|++||+.+++....
T Consensus 74 ~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 153 (447)
T 3dw8_B 74 YSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLR 153 (447)
T ss_dssp EEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCC
T ss_pred ecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceE
Confidence 44556787 889999999998 7999999999999999987554211
Q ss_pred ---------------eccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC-ceeeEE-----ecccccceeEEE
Q 040370 57 ---------------ANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA-NCVRSI-----VGAHGTAEATSA 115 (228)
Q Consensus 57 ---------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~-----~~~~~~~~i~~~ 115 (228)
.......|...|.+++|+|++++|++| .|+.|++||+++. +....+ ....+...|.++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 232 (447)
T 3dw8_B 154 VPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAA 232 (447)
T ss_dssp CCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEE
T ss_pred eccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEE
Confidence 001112248899999999999999998 7999999999844 333322 122237789999
Q ss_pred EECCCC-CEEEEeeCCCeEEEEEccCCee----EEEEecceee----------eeeeEEEECCCCcEEEEeeCCCCeEEE
Q 040370 116 NFTKDQ-RFVLSCGKDSTVKLWEVSSGRL----VKQYLGATHT----------QLRFQAVFNDTEEFVLSIDEPSNEIVI 180 (228)
Q Consensus 116 ~~~~~~-~~l~~~~~d~~i~~wd~~~~~~----~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~d~~i~i 180 (228)
+|+|++ ++|++|+.|+.|++||+++++. ...+..+... ..+.++.|+|++.++++++. +.|++
T Consensus 233 ~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~i 310 (447)
T 3dw8_B 233 EFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKV 310 (447)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEE
T ss_pred EECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC--CeEEE
Confidence 999998 9999999999999999998876 5666553210 27899999999999887654 99999
Q ss_pred EEcCC-cceeEEeecCCCCC---------------cEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 181 WDALT-AEKVAKWSSNHIGA---------------PRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 181 ~d~~~-~~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
||+++ ++.+..+ .+|... +..++|+|++++|++++.||.|++||+.
T Consensus 311 wd~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 311 WDLNMENRPVETY-QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp EETTCCSSCSCCE-ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred EeCCCCcccccee-eccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence 99997 7776666 566532 2348999999999999999999999964
No 90
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=214.89 Aligned_cols=218 Identities=11% Similarity=0.102 Sum_probs=173.4
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEe--CCCCC
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRY--SSTGG 78 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~ 78 (228)
|||+..........+.+|...|++++|+|++++|++++.||.|++||+++++..... .|...|.+++| +|+++
T Consensus 68 iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~ 142 (368)
T 3mmy_A 68 CWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA-----QHDAPVKTIHWIKAPNYS 142 (368)
T ss_dssp EEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----ECSSCEEEEEEEECSSCE
T ss_pred EEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeec-----cccCceEEEEEEeCCCCC
Confidence 577775333444566789999999999999999999999999999999998865532 23889999999 89999
Q ss_pred eEEEEecCCeEEEEeCCCCceeeEEecccc---------------------------------------cceeEEEEECC
Q 040370 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHG---------------------------------------TAEATSANFTK 119 (228)
Q Consensus 79 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---------------------------------------~~~i~~~~~~~ 119 (228)
+|++++.||.|++||+++++.+..+..+.. .....++.+.+
T Consensus 143 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (368)
T 3mmy_A 143 CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFK 222 (368)
T ss_dssp EEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEE
T ss_pred EEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcc
Confidence 999999999999999998887766654310 12233444443
Q ss_pred CCCE----EEEeeCCCeEEEEEccCC---eeEEEEeccee----------eeeeeEEEECCCCcEEEEeeCCCCeEEEEE
Q 040370 120 DQRF----VLSCGKDSTVKLWEVSSG---RLVKQYLGATH----------TQLRFQAVFNDTEEFVLSIDEPSNEIVIWD 182 (228)
Q Consensus 120 ~~~~----l~~~~~d~~i~~wd~~~~---~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d 182 (228)
+... +++++.|+.|++||++.. +....+..+.. ...+.++.|+|++.++++++. ||.|++||
T Consensus 223 ~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-dg~i~iwd 301 (368)
T 3mmy_A 223 DKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS-DGRFSFWD 301 (368)
T ss_dssp CTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET-TSCEEEEE
T ss_pred cCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc-CCeEEEEE
Confidence 3333 999999999999999876 44555555321 126899999999999888766 79999999
Q ss_pred cCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 183 ALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
+++++.+..+ ..|..+|.+++|+|++++|++++.|+..+.|+
T Consensus 302 ~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 302 KDARTKLKTS-EQLDQPISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp TTTTEEEEEC-CCCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred CCCCcEEEEe-cCCCCCceEEEECCCCCeEEEEeccccccccc
Confidence 9999988887 68999999999999999999999988655554
No 91
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2e-34 Score=219.86 Aligned_cols=202 Identities=17% Similarity=0.232 Sum_probs=160.4
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceE-----------Eeeeccceeeec------------cceeeEEe
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQC-----------YLSANVPEISVN------------GAINQVRY 73 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~-----------~~~~~~~~~~~~------------~~i~~~~~ 73 (228)
.+.+.|++++|+|++++||+|+.||.|+||++.+++. ...+. .| . ..|++++|
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~---~h-~~~~~~~~~~~~~~~V~~l~~ 101 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ---SH-EPEFDYLKSLEIEEKINKIRW 101 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE---CC-CCEEEGGGTEEECCCCCEEEE
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc---cc-cccccccccccccCceEEEEE
Confidence 4678999999999999999999999999999987662 22222 22 4 78999999
Q ss_pred CCCC--CeEEEEecCCeEEEEeCCCCcee---------------------------------------eEEeccccccee
Q 040370 74 SSTG--GMYVTASKDGAIRLWDGVSANCV---------------------------------------RSIVGAHGTAEA 112 (228)
Q Consensus 74 ~~~~--~~l~~~~~dg~v~iwd~~~~~~~---------------------------------------~~~~~~~~~~~i 112 (228)
+|++ ..|++++.|+.|++||+.+++.. ..+. ..+...|
T Consensus 102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v 180 (447)
T 3dw8_B 102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA-NAHTYHI 180 (447)
T ss_dssp CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC-SCCSSCC
T ss_pred cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec-cCCCcce
Confidence 9998 79999999999999998764432 1121 2237889
Q ss_pred EEEEECCCCCEEEEeeCCCeEEEEEccCC-eeEEEE-----ecceeeeeeeEEEECCCC-cEEEEeeCCCCeEEEEEcCC
Q 040370 113 TSANFTKDQRFVLSCGKDSTVKLWEVSSG-RLVKQY-----LGATHTQLRFQAVFNDTE-EFVLSIDEPSNEIVIWDALT 185 (228)
Q Consensus 113 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~i~d~~~ 185 (228)
.+++|+|++++|++| .|+.|++||+++. +....+ ....+...+.++.|+|++ .++++++. |+.|++||+++
T Consensus 181 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~ 258 (447)
T 3dw8_B 181 NSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS-KGTIRLCDMRA 258 (447)
T ss_dssp CEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET-TSCEEEEETTT
T ss_pred EEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC-CCeEEEEECcC
Confidence 999999999999998 7999999999843 333322 123367789999999998 66666554 89999999999
Q ss_pred cce----eEEeecCCCC------------CcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 186 AEK----VAKWSSNHIG------------APRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 186 ~~~----~~~~~~~~~~------------~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
++. ...+ ..|.. .|.+++|+|++++|++++. +.|++||+.
T Consensus 259 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~ 314 (447)
T 3dw8_B 259 SALCDRHSKLF-EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLN 314 (447)
T ss_dssp CSSSCTTCEEE-CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETT
T ss_pred CccccceeeEe-ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCC
Confidence 886 5555 56665 8999999999999999998 999999975
No 92
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=2.9e-35 Score=221.31 Aligned_cols=220 Identities=8% Similarity=0.015 Sum_probs=155.7
Q ss_pred CCcCCccccceeE---EEeecCcceEEEEEeC--------CCCEEEEecCCCeEEEEEcccceEEeeeccceeeecccee
Q 040370 1 FFDFSKATAKRAF---RVIQDTHNVRSVSFHP--------SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAIN 69 (228)
Q Consensus 1 iwd~~~~~~~~~~---~~~~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~ 69 (228)
|||.......... .+.+|.+.|++++|+| ++++||+|+.|++|+|||+.++........ + ...+.
T Consensus 115 lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~---~-~~~v~ 190 (393)
T 4gq1_A 115 LIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYP---L-SSPGI 190 (393)
T ss_dssp EEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEE---C-SSCEE
T ss_pred EEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecC---C-CCCcE
Confidence 4666544332221 1347999999999998 789999999999999999988776544432 2 78899
Q ss_pred eEEeCCCC-CeEEEEecCCeEEEEeCCCCceeeEEec-----------------------ccccceeEEEEEC-CCCCEE
Q 040370 70 QVRYSSTG-GMYVTASKDGAIRLWDGVSANCVRSIVG-----------------------AHGTAEATSANFT-KDQRFV 124 (228)
Q Consensus 70 ~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----------------------~~~~~~i~~~~~~-~~~~~l 124 (228)
+++|+|++ ++|++|+.||+|++||+++++....... ..+...+.++.|. |+++.+
T Consensus 191 ~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l 270 (393)
T 4gq1_A 191 SVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGI 270 (393)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEE
T ss_pred EEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEE
Confidence 99999987 4899999999999999988765433211 1124567788876 799999
Q ss_pred EEeeCCCeEEEEEccCCeeEEEEeccee-----------------eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc
Q 040370 125 LSCGKDSTVKLWEVSSGRLVKQYLGATH-----------------TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE 187 (228)
Q Consensus 125 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 187 (228)
++++.|+++++||+..++....+..+.. ........+.+.+..++++++.|+.|++||..+++
T Consensus 271 ~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~ 350 (393)
T 4gq1_A 271 LAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD 350 (393)
T ss_dssp EEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT
T ss_pred EEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc
Confidence 9999999999999987765554432110 11112223334456677778889999999999998
Q ss_pred eeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 188 KVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 188 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
..... ..|..+|.+++|+|+|++||+++.|| +.+|++
T Consensus 351 ~~~~~-~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 351 SNSIP-IQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CCEEE-EECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred EEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 88776 57888999999999999999998776 666665
No 93
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.8e-34 Score=218.97 Aligned_cols=210 Identities=18% Similarity=0.326 Sum_probs=177.7
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeC--CCCC
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYS--STGG 78 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~ 78 (228)
+||+... +....+.+|...|.+++|+|++ +|++|+.||.|++||+++++....+.. | ...|.+++|+ ++++
T Consensus 146 vwd~~~~--~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~---h-~~~v~~l~~~~~~~~~ 218 (464)
T 3v7d_B 146 VYDSINK--KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG---H-NSTVRCLDIVEYKNIK 218 (464)
T ss_dssp EEETTTT--EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECC---C-SSCEEEEEEEESSSCE
T ss_pred EEECCCC--cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECC---C-CCccEEEEEecCCCCC
Confidence 4776643 3455566899999999999988 999999999999999999987766543 2 7899999998 5778
Q ss_pred eEEEEecCCeEEEEeCCCCcee-----------------------eEEecccccceeEEEEECCCCCEEEEeeCCCeEEE
Q 040370 79 MYVTASKDGAIRLWDGVSANCV-----------------------RSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKL 135 (228)
Q Consensus 79 ~l~~~~~dg~v~iwd~~~~~~~-----------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~ 135 (228)
++++|+.||.|++||++++... ..+..+ ...+.++ +++++++++++.|+.|++
T Consensus 219 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~--~~~~~~l~~~~~d~~i~v 294 (464)
T 3v7d_B 219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH--MASVRTV--SGHGNIVVSGSYDNTLIV 294 (464)
T ss_dssp EEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC--SSCEEEE--EEETTEEEEEETTSCEEE
T ss_pred EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc--cceEEEE--cCCCCEEEEEeCCCeEEE
Confidence 9999999999999999876533 223332 5566665 567899999999999999
Q ss_pred EEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEe
Q 040370 136 WEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITC 215 (228)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 215 (228)
||+++++.+..+.+ +...+.++.++|++.++++++. |+.|++||+++++.+..+ .+|...|.+++|+ +.+|+++
T Consensus 295 wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~--~~~l~s~ 368 (464)
T 3v7d_B 295 WDVAQMKCLYILSG--HTDRIYSTIYDHERKRCISASM-DTTIRIWDLENGELMYTL-QGHTALVGLLRLS--DKFLVSA 368 (464)
T ss_dssp EETTTTEEEEEECC--CSSCEEEEEEETTTTEEEEEET-TSCEEEEETTTTEEEEEE-CCCSSCEEEEEEC--SSEEEEE
T ss_pred EECCCCcEEEEecC--CCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEE-eCCCCcEEEEEEc--CCEEEEE
Confidence 99999999888876 6778899999999999888666 899999999999998888 7899999999997 5799999
Q ss_pred cCCCCEEEeeec
Q 040370 216 GTDRSVRFWKEI 227 (228)
Q Consensus 216 ~~dg~i~vwd~~ 227 (228)
+.||.|++||+.
T Consensus 369 s~dg~v~vwd~~ 380 (464)
T 3v7d_B 369 AADGSIRGWDAN 380 (464)
T ss_dssp ETTSEEEEEETT
T ss_pred eCCCcEEEEECC
Confidence 999999999974
No 94
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=5.1e-34 Score=212.13 Aligned_cols=210 Identities=19% Similarity=0.276 Sum_probs=161.0
Q ss_pred eeEEEeecCcceEEEEEeCC---CCEEEEecCCCeEEEEEccc-ceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC
Q 040370 11 RAFRVIQDTHNVRSVSFHPS---GDFLLAGTDHPIAHLYDVNT-FQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD 86 (228)
Q Consensus 11 ~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 86 (228)
....+.+|...|++++|+|+ +++|++|+.||.|++||+.+ +...... ... |...|.+++|+|++++|++++.|
T Consensus 31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~-h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKA--QQM-HTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp CEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEE--EEE-CSSCEEEEEECTTSSEEEEEETT
T ss_pred eeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEE--ecc-ccCCEEEEEECcCCCEEEEEcCC
Confidence 33444589999999999998 69999999999999999987 4433111 122 38899999999999999999999
Q ss_pred CeEEEEeCCCCceeeEEecccccceeEEEEE--CCCCCEEEEeeCCCeEEEEEccCCeeEEEEeccee------------
Q 040370 87 GAIRLWDGVSANCVRSIVGAHGTAEATSANF--TKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATH------------ 152 (228)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~------------ 152 (228)
|.|++||+++++..... .+ ...|.+++| +|++++|++++.|+.|++||+++++.+..+..+..
T Consensus 108 g~v~iwd~~~~~~~~~~-~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (368)
T 3mmy_A 108 KTAKMWDLSSNQAIQIA-QH--DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAV 184 (368)
T ss_dssp SEEEEEETTTTEEEEEE-EC--SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEE
T ss_pred CcEEEEEcCCCCceeec-cc--cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeE
Confidence 99999999988876643 33 778999999 89999999999999999999998877666553210
Q ss_pred ---------------------------eeeeeEEEECCCCc---EEEEeeCCCCeEEEEEcCCc---ceeEEeecCCCC-
Q 040370 153 ---------------------------TQLRFQAVFNDTEE---FVLSIDEPSNEIVIWDALTA---EKVAKWSSNHIG- 198 (228)
Q Consensus 153 ---------------------------~~~~~~~~~~~~~~---~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~- 198 (228)
......+.+.+... ..+++++.|+.|++||++.. .....+ ..|..
T Consensus 185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~~~ 263 (368)
T 3mmy_A 185 VATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF-KCHRSN 263 (368)
T ss_dssp EEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE-ECSEEC
T ss_pred EEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceee-eeeecc
Confidence 00111222222221 22344555899999999887 344444 45554
Q ss_pred -----------CcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 199 -----------APRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 199 -----------~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+|.+++|+|++++|++++.||.|++||+.
T Consensus 264 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 303 (368)
T 3mmy_A 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD 303 (368)
T ss_dssp ----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred cccccccccccceEEEEEecCCCEEEEEccCCeEEEEECC
Confidence 79999999999999999999999999964
No 95
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.9e-34 Score=240.38 Aligned_cols=216 Identities=19% Similarity=0.352 Sum_probs=186.5
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC--CCC
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS--TGG 78 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~ 78 (228)
|||+.+. .....+.+|...|.+++|+|++++|++|+.|+.|++||+.+++....+.. | ...|.+++|+| ++.
T Consensus 641 vw~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~---~-~~~v~~~~~~~~~~~~ 714 (1249)
T 3sfz_A 641 VFKAETG--EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE---H-SEQVNCCHFTNKSNHL 714 (1249)
T ss_dssp EEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---C-SSCEEEEEECSSSSCC
T ss_pred EEECCCC--CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcC---C-CCcEEEEEEecCCCce
Confidence 4777643 34556668999999999999999999999999999999999987766543 2 78999999999 556
Q ss_pred eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecc--------
Q 040370 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA-------- 150 (228)
Q Consensus 79 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-------- 150 (228)
.+++|+.||.|++||+++++....+..| ...|.+++|+|+++++++++.||.|++||+++++....+...
T Consensus 715 ~l~sg~~d~~v~vwd~~~~~~~~~~~~h--~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 792 (1249)
T 3sfz_A 715 LLATGSNDFFLKLWDLNQKECRNTMFGH--TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSED 792 (1249)
T ss_dssp EEEEEETTSCEEEEETTSSSEEEEECCC--SSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC-----
T ss_pred EEEEEeCCCeEEEEECCCcchhheecCC--CCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCC
Confidence 8999999999999999999998888876 778999999999999999999999999999887655443210
Q ss_pred ---------------------------------------------eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC
Q 040370 151 ---------------------------------------------THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT 185 (228)
Q Consensus 151 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 185 (228)
.+...+..+.|+|++.++++++. |+.|++||+.+
T Consensus 793 ~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~v~vwd~~~ 871 (1249)
T 3sfz_A 793 PPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS-QYCVELWNIDS 871 (1249)
T ss_dssp ---CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECS-SSCEEEEETTT
T ss_pred ccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeC-CCeEEEEEcCC
Confidence 23456678889999998888766 79999999999
Q ss_pred cceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 186 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
+.....+ .+|...|.+++|+|++++|++++.||.|++||+
T Consensus 872 ~~~~~~~-~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 872 RLKVADC-RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 911 (1249)
T ss_dssp TEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred Cceeeec-CCCccceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 9888887 799999999999999999999999999999985
No 96
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.5e-34 Score=213.30 Aligned_cols=216 Identities=13% Similarity=0.069 Sum_probs=173.8
Q ss_pred CCcCCcccc-ceeEEEeecCcceEEEEEeCCCC-EEEEecCCCeEEEEEc-ccceEEeeeccceeeeccceeeEEeCCCC
Q 040370 1 FFDFSKATA-KRAFRVIQDTHNVRSVSFHPSGD-FLLAGTDHPIAHLYDV-NTFQCYLSANVPEISVNGAINQVRYSSTG 77 (228)
Q Consensus 1 iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 77 (228)
|||+..... ........|...|.+++|+|+++ +|++|+.||.|++||+ .+++.. .+.. ..|...|.+++|+| +
T Consensus 37 iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~--~~~~~~v~~l~~~~-~ 112 (342)
T 1yfq_A 37 VYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ-ALTN--NEANLGICRICKYG-D 112 (342)
T ss_dssp EEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE-ECBS--CCCCSCEEEEEEET-T
T ss_pred EEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceE-eccc--cCCCCceEEEEeCC-C
Confidence 466665441 23455568999999999999999 9999999999999999 877652 2211 01388999999999 9
Q ss_pred CeEEEEecCCeEEEEeCCC---------CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC-CeeEEEE
Q 040370 78 GMYVTASKDGAIRLWDGVS---------ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS-GRLVKQY 147 (228)
Q Consensus 78 ~~l~~~~~dg~v~iwd~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~ 147 (228)
+.+++++.|+.|++||+++ ++.+..+. +...+.+++|+|++ +++++.|+.|++||+++ +......
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~ 187 (342)
T 1yfq_A 113 DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK---VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTI 187 (342)
T ss_dssp TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS---SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEE
T ss_pred CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe---eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccccee
Confidence 9999999999999999987 66555554 27789999999887 99999999999999988 5543222
Q ss_pred ecceeeeeeeEEEECC-CCcEEEEeeCCCCeEEEEEcCCc------ceeEEeecCCCC---------CcEEEEeCCCCcE
Q 040370 148 LGATHTQLRFQAVFND-TEEFVLSIDEPSNEIVIWDALTA------EKVAKWSSNHIG---------APRWIEHSPAEAA 211 (228)
Q Consensus 148 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~---------~v~~~~~~~~~~~ 211 (228)
....+...+.++.|+| ++.++++++. ||.|++|+++.. +....+ ..|.. .|.+++|+|++++
T Consensus 188 ~~~~~~~~i~~i~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~ 265 (342)
T 1yfq_A 188 EESGLKYQIRDVALLPKEQEGYACSSI-DGRVAVEFFDDQGDDYNSSKRFAF-RCHRLNLKDTNLAYPVNSIEFSPRHKF 265 (342)
T ss_dssp EECSCSSCEEEEEECSGGGCEEEEEET-TSEEEEEECCTTCCSTTCTTCEEE-ECCCCCTTCCSSCCCEEEEEECTTTCC
T ss_pred eecCCCCceeEEEECCCCCCEEEEEec-CCcEEEEEEcCCCcccccccceee-ecccccccccccceeEEEEEEcCCCCE
Confidence 2233566788999999 9988888766 899999999887 555555 45544 9999999999999
Q ss_pred EEEecCCCCEEEeeec
Q 040370 212 FITCGTDRSVRFWKEI 227 (228)
Q Consensus 212 l~s~~~dg~i~vwd~~ 227 (228)
|++++.||.|++||+.
T Consensus 266 l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 266 LYTAGSDGIISCWNLQ 281 (342)
T ss_dssp EEEEETTSCEEEEETT
T ss_pred EEEecCCceEEEEcCc
Confidence 9999999999999974
No 97
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.8e-33 Score=237.83 Aligned_cols=208 Identities=17% Similarity=0.315 Sum_probs=183.1
Q ss_pred eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEE
Q 040370 11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIR 90 (228)
Q Consensus 11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 90 (228)
....+.+|...|++++|+|+++++++|+.||.|++||+.+++....+.. | ...|.+++|+|+++++++++.||.|+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~---h-~~~v~~~~~s~~~~~l~s~~~d~~v~ 682 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA---H-EDEVLCCAFSSDDSYIATCSADKKVK 682 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC---C-SSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEecc---C-CCCEEEEEEecCCCEEEEEeCCCeEE
Confidence 4456678999999999999999999999999999999999987766652 3 88999999999999999999999999
Q ss_pred EEeCCCCceeeEEecccccceeEEEEECC--CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEE
Q 040370 91 LWDGVSANCVRSIVGAHGTAEATSANFTK--DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFV 168 (228)
Q Consensus 91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (228)
+||+.+++.+..+..| ...|.+++|+| ++.++++|+.|+.|++||+++++....+.+ |...+.++.|+|++.++
T Consensus 683 vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~--h~~~v~~~~~sp~~~~l 758 (1249)
T 3sfz_A 683 IWDSATGKLVHTYDEH--SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG--HTNSVNHCRFSPDDELL 758 (1249)
T ss_dssp EEETTTCCEEEEEECC--SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC--CSSCEEEEEECSSTTEE
T ss_pred EEECCCCceEEEEcCC--CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC--CCCCEEEEEEecCCCEE
Confidence 9999999999998876 77999999999 556899999999999999999998888876 67789999999999998
Q ss_pred EEeeCCCCeEEEEEcCCcceeEEe------------------------------------------------------ec
Q 040370 169 LSIDEPSNEIVIWDALTAEKVAKW------------------------------------------------------SS 194 (228)
Q Consensus 169 ~~~~~~d~~i~i~d~~~~~~~~~~------------------------------------------------------~~ 194 (228)
++++. ||.|++||+++++....+ ..
T Consensus 759 ~s~s~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~ 837 (1249)
T 3sfz_A 759 ASCSA-DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT 837 (1249)
T ss_dssp EEEES-SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred EEEEC-CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcC
Confidence 88766 799999998876543322 12
Q ss_pred CCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 195 NHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 195 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+|...+.+++|+|++.++++++.||.|++||+.
T Consensus 838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~ 870 (1249)
T 3sfz_A 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNID 870 (1249)
T ss_dssp SSSSCCCEEEECSSTTEEEEECSSSCEEEEETT
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Confidence 678889999999999999999999999999863
No 98
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.2e-33 Score=223.31 Aligned_cols=215 Identities=15% Similarity=0.293 Sum_probs=182.7
Q ss_pred CCcCCccc--cceeEEEeecCcc-eEEEEEeC--CCCEEEEecCCCeEEEEEcccc--------eEEeeeccceeeeccc
Q 040370 1 FFDFSKAT--AKRAFRVIQDTHN-VRSVSFHP--SGDFLLAGTDHPIAHLYDVNTF--------QCYLSANVPEISVNGA 67 (228)
Q Consensus 1 iwd~~~~~--~~~~~~~~~~~~~-v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~~--------~~~~~~~~~~~~~~~~ 67 (228)
|||+..+. ......+.+|... |++++|+| ++++|++|+.||.|++||+.++ +....+. . |...
T Consensus 43 v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~---~-~~~~ 118 (615)
T 1pgu_A 43 VRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ---V-LAGP 118 (615)
T ss_dssp EEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE---C-CSSC
T ss_pred EEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhh---c-cccc
Confidence 47776431 1456667789999 99999999 9999999999999999999765 2222222 2 3788
Q ss_pred eeeEEeCCCCCeEEEEecC----CeEEEEeCCCCceeeEEecccccceeEEEEECCCCC-EEEEeeCCCeEEEEEccCCe
Q 040370 68 INQVRYSSTGGMYVTASKD----GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR-FVLSCGKDSTVKLWEVSSGR 142 (228)
Q Consensus 68 i~~~~~~~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~ 142 (228)
|.+++|+|+++++++++.+ +.|++|| .++....+..+ ...|.+++|+|+++ .+++++.|+.|++||+++++
T Consensus 119 v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~ 194 (615)
T 1pgu_A 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGH--SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 194 (615)
T ss_dssp EEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSC--SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE
T ss_pred EEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecC--CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc
Confidence 9999999999999999988 7899998 56667777665 77999999999998 89999999999999999999
Q ss_pred eEEEEecceeee---eeeEEEECCC-CcEEEEeeCCCCeEEEEEcCCcceeEEeec---CCCCCcEEEEeCCCCcEEEEe
Q 040370 143 LVKQYLGATHTQ---LRFQAVFNDT-EEFVLSIDEPSNEIVIWDALTAEKVAKWSS---NHIGAPRWIEHSPAEAAFITC 215 (228)
Q Consensus 143 ~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~ 215 (228)
.+..+.. +.. .+.++.|+|+ +.++++++. |+.|++||+++++.+..+.. .|...|.+++|+ ++++|+++
T Consensus 195 ~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~ 270 (615)
T 1pgu_A 195 FSASDRT--HHKQGSFVRDVEFSPDSGEFVITVGS-DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATV 270 (615)
T ss_dssp EEEEECS--SSCTTCCEEEEEECSTTCCEEEEEET-TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEE
T ss_pred eeeeecc--cCCCCceEEEEEECCCCCCEEEEEeC-CCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEE
Confidence 8888876 555 7899999999 888888666 79999999999998888744 899999999999 99999999
Q ss_pred cCCCCEEEeeec
Q 040370 216 GTDRSVRFWKEI 227 (228)
Q Consensus 216 ~~dg~i~vwd~~ 227 (228)
+.||.|++||+.
T Consensus 271 ~~d~~i~~wd~~ 282 (615)
T 1pgu_A 271 GADATIRVWDVT 282 (615)
T ss_dssp ETTSEEEEEETT
T ss_pred cCCCcEEEEECC
Confidence 999999999974
No 99
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1e-33 Score=210.20 Aligned_cols=201 Identities=11% Similarity=0.136 Sum_probs=159.3
Q ss_pred EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE-EEEecCCeEEEE
Q 040370 14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY-VTASKDGAIRLW 92 (228)
Q Consensus 14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~v~iw 92 (228)
....|...|++++|+|++++|++|+.++ +++|++++++...... ...+..+++.++++.+ ++++.|+.|++|
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE------MRHLSKVRMLHRTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE------CSCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee------cCCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence 4567999999999999999999998775 7899998876544322 2357888899888877 567788999999
Q ss_pred eCCCCceeeEEecccccceeEEEEECCCC-----------------------------------CEEEE--eeCCCeEEE
Q 040370 93 DGVSANCVRSIVGAHGTAEATSANFTKDQ-----------------------------------RFVLS--CGKDSTVKL 135 (228)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------------------------~~l~~--~~~d~~i~~ 135 (228)
|+++++.+..+.. ...|.++.++++. .+++. |+.||.|++
T Consensus 87 d~~~~~~~~~~~~---~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~i 163 (355)
T 3vu4_A 87 DDVKKQDVSRIKV---DAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHI 163 (355)
T ss_dssp ETTTTEEEEEEEC---SSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEE
T ss_pred ECCCCcEEEEEEC---CCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEE
Confidence 9999988887763 4477777777642 23333 578889999
Q ss_pred EEccCCe----------------eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCe-EEEEEcCCcceeEEeecC-CC
Q 040370 136 WEVSSGR----------------LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNE-IVIWDALTAEKVAKWSSN-HI 197 (228)
Q Consensus 136 wd~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~i~d~~~~~~~~~~~~~-~~ 197 (228)
||+++++ .+..+.+ |...+.++.|+|++.++++++. |++ |++||+++++.+..+..+ |.
T Consensus 164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~--h~~~v~~~~~s~~g~~l~s~s~-d~~~v~iwd~~~~~~~~~~~~g~h~ 240 (355)
T 3vu4_A 164 TKLQSSGSATTQDQGVQQKAILGKGVLIKA--HTNPIKMVRLNRKSDMVATCSQ-DGTIIRVFKTEDGVLVREFRRGLDR 240 (355)
T ss_dssp EECCC------------------CCEEECC--CSSCEEEEEECTTSSEEEEEET-TCSEEEEEETTTCCEEEEEECTTCC
T ss_pred EECCCCCccccccccccccccCcccEEEEc--cCCceEEEEECCCCCEEEEEeC-CCCEEEEEECCCCcEEEEEEcCCCC
Confidence 9988754 1445554 7788999999999999888666 898 999999999999988545 99
Q ss_pred CCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 198 GAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 198 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
..|.+++|+|++++|++++.|+.|++||+.
T Consensus 241 ~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 241 ADVVDMKWSTDGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp SCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred CcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence 999999999999999999999999999974
No 100
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-34 Score=213.26 Aligned_cols=215 Identities=13% Similarity=0.100 Sum_probs=164.4
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeee------ccceeeeccceeeEEeC
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSA------NVPEISVNGAINQVRYS 74 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~------~~~~~~~~~~i~~~~~~ 74 (228)
|||+........+. ...|.++.|+|+ +++++.|+.|++|+.......... ......|...|.+++|+
T Consensus 62 iwd~~~~~~~~~~~----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 134 (343)
T 3lrv_A 62 FTQLKDSKTITTIT----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGH 134 (343)
T ss_dssp EEEESSSSCEEEEE----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECC
T ss_pred EEECCCCcEEEEEe----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcC
Confidence 46666544333332 467888889888 999999999999987643221111 11111225789999999
Q ss_pred C--CCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeE-EEEecce
Q 040370 75 S--TGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLV-KQYLGAT 151 (228)
Q Consensus 75 ~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-~~~~~~~ 151 (228)
| +++++++++.||.|++||+++++.......++ ...+.+++|+|++.+|++|+.|+.|++||+++++.+ ..+.. .
T Consensus 135 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~-~ 212 (343)
T 3lrv_A 135 NEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKS-DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV-D 212 (343)
T ss_dssp C---CCEEEEEETTCCEEEEESSSSCEEEEECCCS-SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC-C
T ss_pred CCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec-c
Confidence 9 99999999999999999999998866654443 567999999999999999999999999999998877 56654 2
Q ss_pred eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec--CCCCCcE--EEEeCCCCcEEEEecC-CCCEEEeee
Q 040370 152 HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS--NHIGAPR--WIEHSPAEAAFITCGT-DRSVRFWKE 226 (228)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~--~~~~~~~~~~l~s~~~-dg~i~vwd~ 226 (228)
|...+.++.|+|++.++++++ |+.|++||+++++....+.. .|...+. +++|+|++++|++++. |+.|++|++
T Consensus 213 h~~~v~~l~fs~~g~~l~s~~--~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 213 EEAKIKEVKFADNGYWMVVEC--DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp TTSCEEEEEECTTSSEEEEEE--SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEEeCCCCEEEEEe--CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence 567899999999999999877 35999999999877655421 2333443 6999999999999988 999999986
No 101
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-34 Score=217.58 Aligned_cols=204 Identities=16% Similarity=0.135 Sum_probs=169.7
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccce---EEeeecccee---------------------------------
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ---CYLSANVPEI--------------------------------- 62 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~---~~~~~~~~~~--------------------------------- 62 (228)
..++.+++|+|+|++|+++ .++.|++||+.+++ .+........
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999976666 47899999999887 4333221100
Q ss_pred -----------------eeccceeeEEeCCCCCeE-EEEecCCeEEEEeCC--CCceeeEEecccccceeEEEEECCCCC
Q 040370 63 -----------------SVNGAINQVRYSSTGGMY-VTASKDGAIRLWDGV--SANCVRSIVGAHGTAEATSANFTKDQR 122 (228)
Q Consensus 63 -----------------~~~~~i~~~~~~~~~~~l-~~~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~ 122 (228)
.|.+.|.+++|+|++++| ++|+.||.|++||+. +++....+..+.+...+.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 113369999999999986 899999999999999 888888877544467899999999999
Q ss_pred EEEEeeCCCeEEEEEccCCeeEE----EEecceeeeeeeEEEECCC---CcEEEEeeCCCCeEEEEEcCCcceeEEeecC
Q 040370 123 FVLSCGKDSTVKLWEVSSGRLVK----QYLGATHTQLRFQAVFNDT---EEFVLSIDEPSNEIVIWDALTAEKVAKWSSN 195 (228)
Q Consensus 123 ~l~~~~~d~~i~~wd~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 195 (228)
+|++++.++.+++|++.+++... .+.+ |...+.++.|+|+ +.++++++. |+.|++||+++++.+..+..+
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~ 239 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILG--HVSMLTDVHLIKDSDGHQFIITSDR-DEHIKISHYPQCFIVDKWLFG 239 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEE--CSSCEEEEEEEECTTSCEEEEEEET-TSCEEEEEESCTTCEEEECCC
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeec--ccCceEEEEEcCCCCCCcEEEEEcC-CCcEEEEECCCCceeeeeecC
Confidence 99999999999999998876543 4444 6678899999999 888877665 899999999999988886578
Q ss_pred CCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 196 HIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 196 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
|...|.+++|+ ++++|++++.|+.|++||+.
T Consensus 240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~ 270 (450)
T 2vdu_B 240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWK 270 (450)
T ss_dssp CSSCEEEEEEC-STTEEEEEESSSEEEEEETT
T ss_pred CCCceEEEEEC-CCCEEEEEeCCCeEEEEECC
Confidence 99999999999 99999999999999999964
No 102
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-33 Score=202.01 Aligned_cols=208 Identities=18% Similarity=0.317 Sum_probs=172.2
Q ss_pred CcCCccc-cceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCe
Q 040370 2 FDFSKAT-AKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGM 79 (228)
Q Consensus 2 wd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 79 (228)
|++.... .+....+.+|...|.+++| +++++++++.|+.|++|| .++....... + ...+.++.|+| +++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~---~-~~~v~~~~~~~~~~~~ 157 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQA---H-NASVWDAKVVSFSENK 157 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEEC---C-SSCEEEEEEEETTTTE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEeccc---C-CCceeEEEEccCCCCE
Confidence 5555433 2345566689999999999 578999999999999999 4444443332 2 78899999988 8999
Q ss_pred EEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEE
Q 040370 80 YVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQA 159 (228)
Q Consensus 80 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
+++++.||.|++|| ..+....+...+ ...+.+++|+|++. +++++.|+.|++||+++++.+..+.. +...+..+
T Consensus 158 l~~~~~d~~i~i~d--~~~~~~~~~~~~-~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~ 231 (313)
T 3odt_A 158 FLTASADKTIKLWQ--NDKVIKTFSGIH-NDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEG--HESFVYCI 231 (313)
T ss_dssp EEEEETTSCEEEEE--TTEEEEEECSSC-SSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEE
T ss_pred EEEEECCCCEEEEe--cCceEEEEeccC-cccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhc--CCceEEEE
Confidence 99999999999999 455566665533 77899999999988 99999999999999999999888876 67789999
Q ss_pred EECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 160 VFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.|+|++ .+++++. |+.|++||+++++....+ ..|...|.+++|+|+++ +++++.||.|++||+.
T Consensus 232 ~~~~~~-~l~~~~~-dg~v~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 232 KLLPNG-DIVSCGE-DRTVRIWSKENGSLKQVI-TLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp EECTTS-CEEEEET-TSEEEEECTTTCCEEEEE-ECSSSCEEEEEECTTSC-EEEEETTSCEEEEESC
T ss_pred EEecCC-CEEEEec-CCEEEEEECCCCceeEEE-eccCceEEEEEEccCCC-EEEEeCCCcEEEEeCC
Confidence 999999 4555444 899999999999988888 68889999999999998 6678999999999974
No 103
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-34 Score=216.44 Aligned_cols=212 Identities=10% Similarity=0.057 Sum_probs=164.7
Q ss_pred CcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceee-eccceeeEEeCCCCCeE
Q 040370 2 FDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEIS-VNGAINQVRYSSTGGMY 80 (228)
Q Consensus 2 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l 80 (228)
|++........+.+ .|...|.+++|+|+|++||+++.||.|++||.+. ...... +..+ ....+.+++|||+|++|
T Consensus 69 ~~~~~~~~~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~L 144 (588)
T 2j04_A 69 LDFELAQQNGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSI 144 (588)
T ss_dssp TTTSCCCSSCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCE
T ss_pred EEEEeCCCceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEE
Confidence 56665444443332 5588999999999999999999999999999654 333222 1100 02359999999999999
Q ss_pred EEEecCCeEEEEeCCCCce-------eeEEecc--cccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee---EEEEe
Q 040370 81 VTASKDGAIRLWDGVSANC-------VRSIVGA--HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL---VKQYL 148 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~-------~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~ 148 (228)
++|+.||+|++||+.++.. +..+..+ .|...|.+++|+|++ +++++.|+.|++||+..++. ..++.
T Consensus 145 Asgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~ 222 (588)
T 2j04_A 145 VVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ 222 (588)
T ss_dssp EEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred EEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec
Confidence 9999999999999998753 4555321 125799999999999 88899999999999987763 23453
Q ss_pred cceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEe--CCCCcEEEEecCCCCEEEeee
Q 040370 149 GATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEH--SPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~dg~i~vwd~ 226 (228)
. .|...+..++|+ +..+++++ ++.|++||+.+++..... .+|...+..++| +|++..|+++++||. ++|..
T Consensus 223 ~-~h~~~V~svaFs--g~~LASa~--~~tIkLWd~~~~~~~~~~-~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 223 N-ASRRKITDLKIV--DYKVVLTC--PGYVHKIDLKNYSISSLK-TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp C-CCSSCCCCEEEE--TTEEEEEC--SSEEEEEETTTTEEEEEE-CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred c-cccCcEEEEEEE--CCEEEEEe--CCeEEEEECCCCeEEEEE-cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 2 256788899998 56777664 599999999887774443 479999999999 999999999999999 99975
No 104
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-33 Score=203.07 Aligned_cols=211 Identities=18% Similarity=0.303 Sum_probs=171.5
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
|||+... .....+..|...|.+++|+|++++|++++.|+.|++|++..............| ...|.++.| +++++
T Consensus 43 vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~--~~~~l 117 (313)
T 3odt_A 43 LWSKDDQ--WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGH-QGNVCSLSF--QDGVV 117 (313)
T ss_dssp EEEESSS--EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCC-SSCEEEEEE--ETTEE
T ss_pred EEECCCC--EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhc-ccCEEEEEe--cCCEE
Confidence 4776533 344555678999999999999999999999999999998765322222222233 788999999 57799
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEE
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQA 159 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
++++.||.|++|| .++....+..+ ...+.++.|.| +++++++++.|+.|++||. .+....+... +...+..+
T Consensus 118 ~~~~~d~~i~~~d--~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~-~~~~i~~~ 190 (313)
T 3odt_A 118 ISGSWDKTAKVWK--EGSLVYNLQAH--NASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGI-HNDVVRHL 190 (313)
T ss_dssp EEEETTSEEEEEE--TTEEEEEEECC--SSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSS-CSSCEEEE
T ss_pred EEEeCCCCEEEEc--CCcEEEecccC--CCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEecc-CcccEEEE
Confidence 9999999999999 56667777665 77899999988 8999999999999999994 4555555432 56778899
Q ss_pred EECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 160 VFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.++|++. +++++ .|+.|++||+++++.+..+ ..|...|.+++|+|++ .|++++.||.|++||+.
T Consensus 191 ~~~~~~~-~~~~~-~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~ 254 (313)
T 3odt_A 191 AVVDDGH-FISCS-NDGLIKLVDMHTGDVLRTY-EGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKE 254 (313)
T ss_dssp EEEETTE-EEEEE-TTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTS-CEEEEETTSEEEEECTT
T ss_pred EEcCCCe-EEEcc-CCCeEEEEECCchhhhhhh-hcCCceEEEEEEecCC-CEEEEecCCEEEEEECC
Confidence 9999998 55544 4899999999999988888 6899999999999999 69999999999999964
No 105
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=9.6e-33 Score=211.74 Aligned_cols=202 Identities=18% Similarity=0.376 Sum_probs=168.5
Q ss_pred eeEEEeecCcce-EEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370 11 RAFRVIQDTHNV-RSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI 89 (228)
Q Consensus 11 ~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 89 (228)
....+.+|...+ .++.+ ++++|++|+.||.|++||+.+++....+.. | .+.|.+++|+|++ .+++|+.||.|
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~---h-~~~V~~l~~~~~~-~l~s~s~dg~i 185 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSG---H-DGGVWALKYAHGG-ILVSGSTDRTV 185 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECC---C-SSCEEEEEECSTT-EEEEEETTSCE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeC---C-CcCEEEEEEcCCC-EEEEEeCCCCE
Confidence 345667888875 66666 567999999999999999999987766652 3 8899999999987 89999999999
Q ss_pred EEEeCCCCceeeEEecccccceeEEEEEC--CCCCEEEEeeCCCeEEEEEccCCeeEE----------------------
Q 040370 90 RLWDGVSANCVRSIVGAHGTAEATSANFT--KDQRFVLSCGKDSTVKLWEVSSGRLVK---------------------- 145 (228)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d~~i~~wd~~~~~~~~---------------------- 145 (228)
++||+++++....+..| ...|.+++|+ ++++++++++.|+.|++||+++++...
T Consensus 186 ~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
T 3v7d_B 186 RVWDIKKGCCTHVFEGH--NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 263 (464)
T ss_dssp EEEETTTTEEEEEECCC--SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred EEEECCCCcEEEEECCC--CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence 99999999988888765 7789999988 578999999999999999998765432
Q ss_pred -EEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370 146 -QYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224 (228)
Q Consensus 146 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 224 (228)
.+.+ +...+.++ ++++.++++++. |+.|++||+++++.+..+ .+|...|.+++|+|++++|++|+.||.|++|
T Consensus 264 ~~~~~--~~~~v~~~--~~~~~~l~~~~~-d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vw 337 (464)
T 3v7d_B 264 GVLRG--HMASVRTV--SGHGNIVVSGSY-DNTLIVWDVAQMKCLYIL-SGHTDRIYSTIYDHERKRCISASMDTTIRIW 337 (464)
T ss_dssp EEECC--CSSCEEEE--EEETTEEEEEET-TSCEEEEETTTTEEEEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred EEccC--ccceEEEE--cCCCCEEEEEeC-CCeEEEEECCCCcEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 2222 33334333 567788887666 899999999999988888 7899999999999999999999999999999
Q ss_pred eec
Q 040370 225 KEI 227 (228)
Q Consensus 225 d~~ 227 (228)
|+.
T Consensus 338 d~~ 340 (464)
T 3v7d_B 338 DLE 340 (464)
T ss_dssp ETT
T ss_pred ECC
Confidence 974
No 106
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.5e-32 Score=209.24 Aligned_cols=204 Identities=23% Similarity=0.407 Sum_probs=171.7
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
+||..+. +....+.+|...|.+++| ++++|++|+.||.|++||+.+++....+.. | ...|.+++|++ +.+
T Consensus 157 iwd~~~~--~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---h-~~~v~~l~~~~--~~l 226 (435)
T 1p22_A 157 IWDKNTL--ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIH---H-CEAVLHLRFNN--GMM 226 (435)
T ss_dssp EEESSSC--CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECC---C-CSCEEEEECCT--TEE
T ss_pred EEeCCCC--eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcC---C-CCcEEEEEEcC--CEE
Confidence 4666543 344556689999999999 788999999999999999999987766543 2 78899999974 589
Q ss_pred EEEecCCeEEEEeCCCCcee---eEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeee
Q 040370 81 VTASKDGAIRLWDGVSANCV---RSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRF 157 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 157 (228)
++|+.||.|++||+++++.. ..+..+ ...|.+++| +++++++|+.|+.|++||+++++.+..+.. +...+.
T Consensus 227 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~ 300 (435)
T 1p22_A 227 VTCSKDRSIAVWDMASPTDITLRRVLVGH--RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNG--HKRGIA 300 (435)
T ss_dssp EEEETTSCEEEEECSSSSCCEEEEEECCC--SSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEE
T ss_pred EEeeCCCcEEEEeCCCCCCceeeeEecCC--CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcC--CCCcEE
Confidence 99999999999999988765 344443 778999998 688999999999999999999999988876 556677
Q ss_pred EEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
++.+ ++.++++++. |+.|++||+++++.+..+ .+|...|.+++| ++.+|++|+.||.|++||+
T Consensus 301 ~~~~--~~~~l~~g~~-dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 301 CLQY--RDRLVVSGSS-DNTIRLWDIECGACLRVL-EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp EEEE--ETTEEEEEET-TSCEEEEETTTCCEEEEE-CCCSSCEEEEEC--CSSEEEEEETTSCEEEEEH
T ss_pred EEEe--CCCEEEEEeC-CCeEEEEECCCCCEEEEE-eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEEC
Confidence 7777 4566766555 899999999999998888 789999999999 7889999999999999996
No 107
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.1e-33 Score=208.70 Aligned_cols=202 Identities=8% Similarity=-0.004 Sum_probs=165.9
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC-eEEEEecCCeEEEEeC-
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG-MYVTASKDGAIRLWDG- 94 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~- 94 (228)
+|.+.|++++|+|++++|++++.|+.|++|++.+++.......... |...|.+++|+|+++ +|++|+.||.|++||+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 87 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI 87 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEE-CSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeee-cCCceEEEEECCCCCcEEEEEcCCCeEEEEEec
Confidence 6999999999999999999999999999999988762111222223 388999999999999 9999999999999999
Q ss_pred CCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC---------CeeEEEEecceeeeeeeEEEECCCC
Q 040370 95 VSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS---------GRLVKQYLGATHTQLRFQAVFNDTE 165 (228)
Q Consensus 95 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (228)
++++. ..+....+...|.+++|+| ++++++++.|+.|++||+++ ++.+..+. +...+.++.++|++
T Consensus 88 ~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~ 162 (342)
T 1yfq_A 88 GSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK---VKNKIFTMDTNSSR 162 (342)
T ss_dssp SSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS---SCCCEEEEEECSSE
T ss_pred cCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe---eCCceEEEEecCCc
Confidence 77754 4454411378999999999 99999999999999999987 65555544 56778899999887
Q ss_pred cEEEEeeCCCCeEEEEEcCC-cce-eEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeeec
Q 040370 166 EFVLSIDEPSNEIVIWDALT-AEK-VAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 166 ~~~~~~~~~d~~i~i~d~~~-~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~ 227 (228)
++++ +.|+.|++||+++ +.. .......|...+.+++|+| +++++++++.||.|++|++.
T Consensus 163 --l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~ 224 (342)
T 1yfq_A 163 --LIVG-MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224 (342)
T ss_dssp --EEEE-ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred --EEEE-eCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence 5554 4479999999998 554 3333357888999999999 99999999999999999874
No 108
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-32 Score=208.81 Aligned_cols=222 Identities=11% Similarity=0.054 Sum_probs=175.7
Q ss_pred CCcCC--ccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEe-eeccceeeeccceeeEEeCCC-
Q 040370 1 FFDFS--KATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYL-SANVPEISVNGAINQVRYSST- 76 (228)
Q Consensus 1 iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~- 76 (228)
|||+. .......+....|...|.+++|+|++++|++|+.+|.|++|++.+++... .......| ...|++++|+|+
T Consensus 129 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~ 207 (450)
T 2vdu_B 129 VFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGH-VSMLTDVHLIKDS 207 (450)
T ss_dssp EEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEEC-SSCEEEEEEEECT
T ss_pred EEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecc-cCceEEEEEcCCC
Confidence 57776 44444444444778999999999999999999999999999998876543 22233334 889999999999
Q ss_pred --CCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecc----
Q 040370 77 --GGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA---- 150 (228)
Q Consensus 77 --~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~---- 150 (228)
+++|++|+.|+.|++||+++++.+..+...+ ...|.+++|+ ++++|++++.|+.|++||+++++.+..+..+
T Consensus 208 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 285 (450)
T 2vdu_B 208 DGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH-KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIK 285 (450)
T ss_dssp TSCEEEEEEETTSCEEEEEESCTTCEEEECCCC-SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHG
T ss_pred CCCcEEEEEcCCCcEEEEECCCCceeeeeecCC-CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhh
Confidence 9999999999999999999998887754333 7799999999 9999999999999999999999988877532
Q ss_pred -------------------eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEc--CCc---ceeEEeecCCCCCcEEEEeC
Q 040370 151 -------------------THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDA--LTA---EKVAKWSSNHIGAPRWIEHS 206 (228)
Q Consensus 151 -------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~--~~~---~~~~~~~~~~~~~v~~~~~~ 206 (228)
.....+..+.++|++.++++++..|+.|++|++ .++ +.+..+ ..| +.|.+++|+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~-~~~-~~v~~~~~~ 363 (450)
T 2vdu_B 286 PYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQII-TFP-YNVISLSAH 363 (450)
T ss_dssp GGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEE-ECS-SCEEEEEEE
T ss_pred hhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEe-ccC-CceEEEEec
Confidence 123457788999999999998856899999999 555 445555 455 889999999
Q ss_pred CCCcEEEEecC------CCCEEEeeec
Q 040370 207 PAEAAFITCGT------DRSVRFWKEI 227 (228)
Q Consensus 207 ~~~~~l~s~~~------dg~i~vwd~~ 227 (228)
|++.++++++. +..|.+|.+.
T Consensus 364 ~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 364 NDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp TTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred CCcEEEEEecccCCCCCCcceEEEEEE
Confidence 96544444343 5568998753
No 109
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-33 Score=206.30 Aligned_cols=198 Identities=9% Similarity=0.055 Sum_probs=155.6
Q ss_pred ecCcceEEEEEeC--CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC
Q 040370 17 QDTHNVRSVSFHP--SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG 94 (228)
Q Consensus 17 ~~~~~v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~ 94 (228)
+|..+|.+++|+| +++++++|+.||.|++||+++++....... ++...+.+++|+|++++|++|+.||.|++||+
T Consensus 123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~ 199 (343)
T 3lrv_A 123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA---KSDVEYSSGVLHKDSLLLALYSPDGILDVYNL 199 (343)
T ss_dssp CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC---CSSCCCCEEEECTTSCEEEEECTTSCEEEEES
T ss_pred CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec---CCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 5678999999999 999999999999999999999887544322 22567999999999999999999999999999
Q ss_pred CCCcee-eEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce-eeeee--eEEEECCCCcEEEE
Q 040370 95 VSANCV-RSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT-HTQLR--FQAVFNDTEEFVLS 170 (228)
Q Consensus 95 ~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~ 170 (228)
++++.. ..+...| ..+|.+++|+|++.+|++++. +.|++||+++++.+..+.... +...+ .+++|+|+++++++
T Consensus 200 ~~~~~~~~~~~~~h-~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 277 (343)
T 3lrv_A 200 SSPDQASSRFPVDE-EAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIA 277 (343)
T ss_dssp SCTTSCCEECCCCT-TSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEE
T ss_pred CCCCCCccEEeccC-CCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEE
Confidence 999887 6676622 789999999999999999994 599999999887655443210 11112 46999999999999
Q ss_pred eeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC---CCcEEEEecCCCCEEEe
Q 040370 171 IDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP---AEAAFITCGTDRSVRFW 224 (228)
Q Consensus 171 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~dg~i~vw 224 (228)
++..|+.+++|++.+....... .++..+.|.| +...+++++.||.+.++
T Consensus 278 ~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 278 YSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp EETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred ecCCCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEE
Confidence 7775799999999766543332 4567777877 77788888888887765
No 110
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=6.2e-33 Score=211.31 Aligned_cols=208 Identities=19% Similarity=0.362 Sum_probs=172.3
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
+||+... +....+.+|...|.+++|+ +..+++|+.||.|++||+.+++..........| ...|.+++| +++++
T Consensus 197 vwd~~~~--~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~--~~~~l 269 (435)
T 1p22_A 197 VWDVNTG--EMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVDF--DDKYI 269 (435)
T ss_dssp EEESSSC--CEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCC-SSCEEEEEE--ETTEE
T ss_pred EEECCCC--cEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCC-CCcEEEEEe--CCCEE
Confidence 4777644 3455566899999999996 459999999999999999987654333333333 788999999 68899
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV 160 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
++|+.||.|++||+++++.+..+..+ ...+.++.++ ++++++|+.||.|++||+++++.+..+.+ |...+.++.
T Consensus 270 ~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~ 343 (435)
T 1p22_A 270 VSASGDRTIKVWNTSTCEFVRTLNGH--KRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEG--HEELVRCIR 343 (435)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECC--CSSCEEEEE
T ss_pred EEEeCCCeEEEEECCcCcEEEEEcCC--CCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeC--CcCcEEEEE
Confidence 99999999999999999999988876 6788999884 68999999999999999999999988876 566777887
Q ss_pred ECCCCcEEEEeeCCCCeEEEEEcCCcc---------eeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 161 FNDTEEFVLSIDEPSNEIVIWDALTAE---------KVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+ ++.++++++. ||.|++||++++. ....+ .+|.+.|.+++| ++.+|++++.||.|++||+.
T Consensus 344 ~--~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 344 F--DNKRIVSGAY-DGKIKVWDLVAALDPRAPAGTLCLRTL-VEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp C--CSSEEEEEET-TSCEEEEEHHHHTSTTSCTTTTEEEEE-CCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--
T ss_pred e--cCCEEEEEeC-CCcEEEEECCCCCCccccccchheeec-cCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECC
Confidence 7 6777777655 8999999998776 56666 789999999999 77889999999999999974
No 111
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7.7e-33 Score=218.67 Aligned_cols=199 Identities=14% Similarity=0.190 Sum_probs=171.1
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccc----eEEeeeccceeeeccc-eeeEEeCC--CCCeEEEEecCCeE
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTF----QCYLSANVPEISVNGA-INQVRYSS--TGGMYVTASKDGAI 89 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~~~~~-i~~~~~~~--~~~~l~~~~~dg~v 89 (228)
.|...|.+++|+|++++|++++ ++.|++|++.++ +....+.. | ... |++++|+| ++++|++|+.||.|
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~---h-~~~~v~~~~~sp~~~~~~l~s~~~dg~v 90 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTG---H-GSSVVTTVKFSPIKGSQYLCSGDESGKV 90 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECT---T-TTSCEEEEEECSSTTCCEEEEEETTSEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEec---C-CCceEEEEEECcCCCCCEEEEecCCCEE
Confidence 5789999999999999999998 789999999987 55554433 2 778 99999999 99999999999999
Q ss_pred EEEeCCCC--------ceeeEEecccccceeEEEEECCCCCEEEEeeCC----CeEEEEEccCCeeEEEEecceeeeeee
Q 040370 90 RLWDGVSA--------NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD----STVKLWEVSSGRLVKQYLGATHTQLRF 157 (228)
Q Consensus 90 ~iwd~~~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~~wd~~~~~~~~~~~~~~~~~~~~ 157 (228)
++||+.++ +....+..+ ...|.+++|+|++++|++++.+ +.|++|| .++.+..+.. +...+.
T Consensus 91 ~vw~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~--~~~~v~ 164 (615)
T 1pgu_A 91 IVWGWTFDKESNSVEVNVKSEFQVL--AGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSG--HSQRIN 164 (615)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEECC--SSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCS--CSSCEE
T ss_pred EEEeCCCCcccccccccccchhhcc--cccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeec--CCccEE
Confidence 99999755 455555554 7789999999999999999988 6888888 5566666665 677899
Q ss_pred EEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCC---CcEEEEeCCC-CcEEEEecCCCCEEEeeec
Q 040370 158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIG---APRWIEHSPA-EAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~ 227 (228)
++.|+|++++++++++.|+.|++||.++++....+ .+|.. .|.+++|+|+ +++|++++.||.|++||+.
T Consensus 165 ~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 237 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD-RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK 237 (615)
T ss_dssp EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE-CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred EEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee-cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence 99999999865555666899999999999988887 68888 9999999999 9999999999999999963
No 112
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.2e-31 Score=199.77 Aligned_cols=157 Identities=11% Similarity=0.077 Sum_probs=127.4
Q ss_pred ceeeEEeCCCCCeEEEE--ecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeE
Q 040370 67 AINQVRYSSTGGMYVTA--SKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLV 144 (228)
Q Consensus 67 ~i~~~~~~~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 144 (228)
.+.+++|+|+|++++++ +.|++|++||+++++.+..+.. ...|.+++|+|+++++++++.+ .+.+|+..+++.+
T Consensus 135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~---~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~ 210 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIET---RGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCI 210 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEEC---SSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEE
T ss_pred CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCC---CCceEEEEEccCCceEEeccce-eEEEEEeccCcce
Confidence 36789999999987754 4789999999999998887753 5679999999999999999855 5777777777776
Q ss_pred EEEecceeeeeeeEEEECCCCcEEEEeeCCCC---eEEEEEcCCcceeE---EeecCCCCCcEEEEeCCCCcEEEEecCC
Q 040370 145 KQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN---EIVIWDALTAEKVA---KWSSNHIGAPRWIEHSPAEAAFITCGTD 218 (228)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~i~i~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~~~d 218 (228)
.......+...+..+.|+|++.++++++...+ .+++|++....... ....+|..+|++++|+|++++||+|+.|
T Consensus 211 ~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D 290 (365)
T 4h5i_A 211 ARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND 290 (365)
T ss_dssp EEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT
T ss_pred eeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC
Confidence 65544456778899999999999998766322 68889987665422 1225889999999999999999999999
Q ss_pred CCEEEeeec
Q 040370 219 RSVRFWKEI 227 (228)
Q Consensus 219 g~i~vwd~~ 227 (228)
+.|+|||+.
T Consensus 291 ~~V~iwd~~ 299 (365)
T 4h5i_A 291 NSIALVKLK 299 (365)
T ss_dssp SCEEEEETT
T ss_pred CEEEEEECC
Confidence 999999964
No 113
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6.8e-31 Score=200.56 Aligned_cols=210 Identities=20% Similarity=0.381 Sum_probs=174.2
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
+||+... +....+.+|...|.+++| +++++++|+.||.|++||+.+++....+.. | ...|.++.| +++++
T Consensus 223 ~wd~~~~--~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~-~~~v~~~~~--~~~~l 292 (445)
T 2ovr_B 223 VWDIETG--QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQG---H-TNRVYSLQF--DGIHV 292 (445)
T ss_dssp EEESSSC--CEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECC---C-SSCEEEEEE--CSSEE
T ss_pred EEECCCC--cEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecC---C-CCceEEEEE--CCCEE
Confidence 4666643 344555678999999998 788899999999999999998887766543 2 778999999 78899
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce-eeeeeeEE
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT-HTQLRFQA 159 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~ 159 (228)
++|+.||.|++||+++++.+..+..+ ...+.++.++ ++++++++.||.|++||+++++.+..+..+. +...+.++
T Consensus 293 ~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 368 (445)
T 2ovr_B 293 VSGSLDTSIRVWDVETGNCIHTLTGH--QSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL 368 (445)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCC--CSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEE
T ss_pred EEEeCCCeEEEEECCCCCEEEEEcCC--cccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEE
Confidence 99999999999999999998888765 6677777764 6799999999999999999999888886532 56677888
Q ss_pred EECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee----cCCCCCcEEEEeCCCCcEEEEecCCCC----EEEeeec
Q 040370 160 VFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS----SNHIGAPRWIEHSPAEAAFITCGTDRS----VRFWKEI 227 (228)
Q Consensus 160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~s~~~dg~----i~vwd~~ 227 (228)
.++ +.++++++. ||.|++||+++++.+..+. ..|.+.|.+++|+|++.++++|+.||. |.+||..
T Consensus 369 ~~~--~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 369 QFN--KNFVITSSD-DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp EEC--SSEEEEEET-TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred EEC--CCEEEEEeC-CCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence 885 466666555 8999999999999887763 367889999999999999999999998 9999964
No 114
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=210.07 Aligned_cols=197 Identities=6% Similarity=-0.005 Sum_probs=152.7
Q ss_pred cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEe--------e------------e------ccce-eeeccceee
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYL--------S------------A------NVPE-ISVNGAINQ 70 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~--------~------------~------~~~~-~~~~~~i~~ 70 (228)
-...|.+++|+|||+++|+++.|++|+ |.+.++.+. . . .... .+ ...|.+
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~-~~~V~~ 90 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQP-VCYPRV 90 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSC-SCCEEE
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCC-CCcEEE
Confidence 467899999999999999999999996 544433110 0 0 0111 22 678999
Q ss_pred EEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccc---cceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee----
Q 040370 71 VRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHG---TAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL---- 143 (228)
Q Consensus 71 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---- 143 (228)
++|+|+|+.||+++.||.|++||.+. .+..+. ++. ...+.+++|+|+|++|++|+.||+|++||+.+++.
T Consensus 91 vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~ 167 (588)
T 2j04_A 91 CKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPE 167 (588)
T ss_dssp EEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccccc
Confidence 99999999999999999999999544 444444 321 23699999999999999999999999999998752
Q ss_pred ---EEEEec--ceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCccee---EEeecCCCCCcEEEEeCCCCcEEEEe
Q 040370 144 ---VKQYLG--ATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKV---AKWSSNHIGAPRWIEHSPAEAAFITC 215 (228)
Q Consensus 144 ---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~ 215 (228)
+.++.. ..|...+.+++|+|++ +++++. |+.+++||+..+... .++..+|...|.+++|+ ++.||++
T Consensus 168 ~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~-D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa 242 (588)
T 2j04_A 168 FYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS-NNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLT 242 (588)
T ss_dssp CEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET-TCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEE
T ss_pred ceeeeeeecccccccccEEEEEEcCCc--EEEEeC-CCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEE
Confidence 455531 1256789999999999 555555 899999999887742 34434788999999999 6889988
Q ss_pred cCCCCEEEeee
Q 040370 216 GTDRSVRFWKE 226 (228)
Q Consensus 216 ~~dg~i~vwd~ 226 (228)
+ ++.|++||+
T Consensus 243 ~-~~tIkLWd~ 252 (588)
T 2j04_A 243 C-PGYVHKIDL 252 (588)
T ss_dssp C-SSEEEEEET
T ss_pred e-CCeEEEEEC
Confidence 7 699999996
No 115
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6.9e-31 Score=200.53 Aligned_cols=205 Identities=19% Similarity=0.362 Sum_probs=174.9
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
+||+... +....+.+|...|.+++|+ ++++++|+.||.|++||+.+++....+.. | ...|.++.|+ ++.+
T Consensus 143 vwd~~~~--~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---h-~~~v~~~~~~--~~~l 212 (445)
T 2ovr_B 143 VWSAVTG--KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYG---H-TSTVRCMHLH--EKRV 212 (445)
T ss_dssp EEETTTC--CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECC---C-SSCEEEEEEE--TTEE
T ss_pred EEECCCC--cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECC---C-CCcEEEEEec--CCEE
Confidence 4776643 3445566899999999997 67999999999999999999987766543 2 7889999995 5689
Q ss_pred EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370 81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV 160 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
++|+.||.|++||+++++....+..+ ...+.++.+ +++++++++.|+.|++||+++++.+..+.. +...+.++.
T Consensus 213 ~s~s~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~ 286 (445)
T 2ovr_B 213 VSGSRDATLRVWDIETGQCLHVLMGH--VAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQG--HTNRVYSLQ 286 (445)
T ss_dssp EEEETTSEEEEEESSSCCEEEEEECC--SSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECC--CSSCEEEEE
T ss_pred EEEeCCCEEEEEECCCCcEEEEEcCC--cccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecC--CCCceEEEE
Confidence 99999999999999999998888776 778999998 688999999999999999999999888876 566777787
Q ss_pred ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+ ++.++++++. |+.|++||+++++.+..+ .+|...+.++.+ ++++|++++.||.|++||+.
T Consensus 287 ~--~~~~l~~~~~-d~~i~i~d~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~ 347 (445)
T 2ovr_B 287 F--DGIHVVSGSL-DTSIRVWDVETGNCIHTL-TGHQSLTSGMEL--KDNILVSGNADSTVKIWDIK 347 (445)
T ss_dssp E--CSSEEEEEET-TSCEEEEETTTCCEEEEE-CCCCSCEEEEEE--ETTEEEEEETTSCEEEEETT
T ss_pred E--CCCEEEEEeC-CCeEEEEECCCCCEEEEE-cCCcccEEEEEE--eCCEEEEEeCCCeEEEEECC
Confidence 7 6777777665 899999999999998887 689999998887 46799999999999999963
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=2.4e-30 Score=194.32 Aligned_cols=211 Identities=13% Similarity=0.103 Sum_probs=172.2
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEE-EEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFL-LAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM 79 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 79 (228)
+||+... +......+...+.+++|+|+++++ ++++.|+.|++||+.+++....... ...+.+++|+|++++
T Consensus 16 v~d~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~-----~~~v~~~~~spdg~~ 87 (391)
T 1l0q_A 16 VIDVTSN---KVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA-----GSSPQGVAVSPDGKQ 87 (391)
T ss_dssp EEETTTT---EEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC-----SSSEEEEEECTTSSE
T ss_pred EEECCCC---eEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC-----CCCccceEECCCCCE
Confidence 4666643 233334455679999999999977 6777899999999999987665543 348999999999997
Q ss_pred EE-EEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEE-EEeeCCCeEEEEEccCCeeEEEEecceeeeeee
Q 040370 80 YV-TASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFV-LSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRF 157 (228)
Q Consensus 80 l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 157 (228)
++ +++.++.|++||+.+++....+.. ...+.+++|+|+++++ ++++.|+.|++||+++++....+..+ ..+.
T Consensus 88 l~~~~~~~~~v~v~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~ 161 (391)
T 1l0q_A 88 VYVTNMASSTLSVIDTTSNTVAGTVKT---GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG---RSPK 161 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC---SSEE
T ss_pred EEEEECCCCEEEEEECCCCeEEEEEeC---CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC---CCcc
Confidence 75 555679999999999988877765 3467999999999977 68888999999999999888877642 3457
Q ss_pred EEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEec---CCCCEEEeeec
Q 040370 158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCG---TDRSVRFWKEI 227 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~dg~i~vwd~~ 227 (228)
.+.|+|+++++++++..++.|++||+++++....+ .+...+.+++|+|++++|++++ .++.|++||+.
T Consensus 162 ~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~ 232 (391)
T 1l0q_A 162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV--KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG 232 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE--ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE--ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence 88999999999777777899999999998877766 3566889999999999998888 68999999963
No 117
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-31 Score=215.14 Aligned_cols=215 Identities=12% Similarity=0.188 Sum_probs=168.0
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
|||... .+......|..+|.+++|+| +++|++++.|+.|++||+.+++.+..+. + ...|++++|+|+++++
T Consensus 43 lw~~~~---~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~----~-~~~V~~v~~sp~g~~l 113 (902)
T 2oaj_A 43 IYGQQQ---VEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF----V-PGKITSIDTDASLDWM 113 (902)
T ss_dssp EECSTT---CEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE----C-SSCEEEEECCTTCSEE
T ss_pred EEeCCC---cEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc----C-CCCEEEEEECCCCCEE
Confidence 465542 22333446888999999999 8899999999999999999988766553 2 6789999999999999
Q ss_pred EEEecCCeEEEEeCCCCceeeE-E--------ecccccceeEEEEECCC-CCEEEEeeCCCeEEEEEccCCeeEEEEecc
Q 040370 81 VTASKDGAIRLWDGVSANCVRS-I--------VGAHGTAEATSANFTKD-QRFVLSCGKDSTVKLWEVSSGRLVKQYLGA 150 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~~~~~~~~-~--------~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 150 (228)
++|+.||.|++||+++++.... + ....+...|.+++|+|+ +..+++|+.|+.| +||+++++.+..+..+
T Consensus 114 ~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~ 192 (902)
T 2oaj_A 114 LIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYE 192 (902)
T ss_dssp EEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCC
T ss_pred EEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecc
Confidence 9999999999999998775311 1 11223678999999995 5789999999999 9999999888877653
Q ss_pred ----------------eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee----c-------------CCC
Q 040370 151 ----------------THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS----S-------------NHI 197 (228)
Q Consensus 151 ----------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~----~-------------~~~ 197 (228)
.|...+.++.|+|++.++++++. |+.|++||+++++.+.... . .|.
T Consensus 193 ~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~-Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~ 271 (902)
T 2oaj_A 193 LPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHE-DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNA 271 (902)
T ss_dssp BCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEET-TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCC
T ss_pred cCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCcccc
Confidence 12467899999999999888666 8999999999988765311 1 134
Q ss_pred CCcEEEEeC----CCC-cEEEEecCC-----CCEEEeee
Q 040370 198 GAPRWIEHS----PAE-AAFITCGTD-----RSVRFWKE 226 (228)
Q Consensus 198 ~~v~~~~~~----~~~-~~l~s~~~d-----g~i~vwd~ 226 (228)
.+|.+++|+ |++ .+|++|+.| ..+++|++
T Consensus 272 ~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 272 AKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp CEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred CCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 579999995 543 567777665 37888874
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.6e-29 Score=189.86 Aligned_cols=211 Identities=11% Similarity=0.105 Sum_probs=170.2
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM 79 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 79 (228)
+||+...+ ......+...+.+++|+|++++|+ +++.++.|++||+.+++....... ...+.+++|+|+++.
T Consensus 58 v~d~~~~~---~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~~ 129 (391)
T 1l0q_A 58 IIDTATNN---VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-----GKSPLGLALSPDGKK 129 (391)
T ss_dssp EEETTTTE---EEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-----SSSEEEEEECTTSSE
T ss_pred EEECCCCe---EEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-----CCCcceEEECCCCCE
Confidence 36665332 333344555999999999999875 555679999999999887665442 456899999999997
Q ss_pred E-EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEE-EEeeCCCeEEEEEccCCeeEEEEecceeeeeee
Q 040370 80 Y-VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFV-LSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRF 157 (228)
Q Consensus 80 l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 157 (228)
+ ++++.|+.|++||+++++....+..+ ..+.+++|+|+++++ ++++.++.|++||+++++....+.. ...+.
T Consensus 130 l~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~ 203 (391)
T 1l0q_A 130 LYVTNNGDKTVSVINTVTKAVINTVSVG---RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---EAAPS 203 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSEEE
T ss_pred EEEEeCCCCEEEEEECCCCcEEEEEecC---CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec---CCCcc
Confidence 7 68888999999999999888877663 356899999999887 6778899999999999988777653 44667
Q ss_pred EEEECCCCcEEEEeeC--CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEE-EEecCCCCEEEeeec
Q 040370 158 QAVFNDTEEFVLSIDE--PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAF-ITCGTDRSVRFWKEI 227 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~ 227 (228)
.+.++|+++++++++. .++.|++||+++++.+..+ ..| ..+.+++|+|++++| ++++.|+.|++||+.
T Consensus 204 ~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI-PVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE-ECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE-ecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 8899999999998874 5799999999999887777 344 357899999999877 677899999999963
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=6.5e-30 Score=189.78 Aligned_cols=200 Identities=12% Similarity=0.181 Sum_probs=154.8
Q ss_pred cceEEEEEeCCCCEE-EEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCC---------------------
Q 040370 20 HNVRSVSFHPSGDFL-LAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG--------------------- 77 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------- 77 (228)
..+..+++.++++.+ ++++.|+.|++||..+++.+..+.. ...|.+++|+++.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~-----~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~ 133 (355)
T 3vu4_A 59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKV-----DAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRI 133 (355)
T ss_dssp SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEEC-----SSCEEEEEECSSEEEEEETTEEEEEESSTTCCBS
T ss_pred CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEEC-----CCceEEEEEcCCEEEEEEcCEEEEEECCCCceee
Confidence 358888999988877 5678889999999999987765532 4567777776542
Q ss_pred --------------CeEEE--EecCCeEEEEeCCCCc----------------eeeEEecccccceeEEEEECCCCCEEE
Q 040370 78 --------------GMYVT--ASKDGAIRLWDGVSAN----------------CVRSIVGAHGTAEATSANFTKDQRFVL 125 (228)
Q Consensus 78 --------------~~l~~--~~~dg~v~iwd~~~~~----------------~~~~~~~~~~~~~i~~~~~~~~~~~l~ 125 (228)
++++. |+.||.|++||+++++ ....+..| ...|.+++|+|++++|+
T Consensus 134 ~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h--~~~v~~~~~s~~g~~l~ 211 (355)
T 3vu4_A 134 TDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH--TNPIKMVRLNRKSDMVA 211 (355)
T ss_dssp SCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCC--SSCEEEEEECTTSSEEE
T ss_pred EEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc--CCceEEEEECCCCCEEE
Confidence 23444 5788899999988765 14556555 78999999999999999
Q ss_pred EeeCCCe-EEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEE-------------
Q 040370 126 SCGKDST-VKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAK------------- 191 (228)
Q Consensus 126 ~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~------------- 191 (228)
+|+.|++ |++||+++++.+..+....|...+.+++|+|++.++++++. |+.|++||++.+.....
T Consensus 212 s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 290 (355)
T 3vu4_A 212 TCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSD-KWTLHVFEIFNDQDNKRHALKGWINMKYFQ 290 (355)
T ss_dssp EEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEET-TCEEEEEESSCCSCCCSEETTTTEECCCCC
T ss_pred EEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEEC-CCEEEEEEccCCCCcccccccceeeccccc
Confidence 9999998 99999999999988873235678999999999999988766 89999999976532110
Q ss_pred ---------eecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 192 ---------WSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 192 ---------~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+......+...++|++++++|++++.||.+++|++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 291 SEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp CSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred cccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence 111122334779999999999999999999999863
No 120
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.4e-30 Score=186.71 Aligned_cols=201 Identities=15% Similarity=0.206 Sum_probs=159.0
Q ss_pred ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCcee
Q 040370 21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCV 100 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 100 (228)
..++|+||+++ +||+|. |++|+|||+++++....+... . |...|++++|+|+++++++|+.||.|++||+++++.+
T Consensus 27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~-~-~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQME-Q-PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECC-S-TTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred cceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEec-C-CCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeE
Confidence 35789999876 777765 899999999999887765432 2 2778999999999999999999999999999988876
Q ss_pred eEEeccc---------------------------------------ccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC
Q 040370 101 RSIVGAH---------------------------------------GTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG 141 (228)
Q Consensus 101 ~~~~~~~---------------------------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~ 141 (228)
..+..|. +...+..+.+.++++++++++.|+.|++||++++
T Consensus 103 ~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 182 (318)
T 4ggc_A 103 RNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 182 (318)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred EEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence 6654331 2456788889999999999999999999999876
Q ss_pred eeEEE--EecceeeeeeeEEEECCCCcEEE--EeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEec-
Q 040370 142 RLVKQ--YLGATHTQLRFQAVFNDTEEFVL--SIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCG- 216 (228)
Q Consensus 142 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~- 216 (228)
+.... .....+...+..+.+.|.+..++ ++++.++.|++||.+........ .+...+..+.|+|++..+++++
T Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~sg 260 (318)
T 4ggc_A 183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--DAHSQVCSILWSPHYKELISGHG 260 (318)
T ss_dssp TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE--ECSSCEEEEEEETTTTEEEEEEC
T ss_pred cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc--cceeeeeeeeecccccceEEEEE
Confidence 53221 11222556677888888776544 45667899999999888877665 5777899999999988877654
Q ss_pred -CCCCEEEeeec
Q 040370 217 -TDRSVRFWKEI 227 (228)
Q Consensus 217 -~dg~i~vwd~~ 227 (228)
.|+.|++||+.
T Consensus 261 ~~d~~i~iwd~~ 272 (318)
T 4ggc_A 261 FAQNQLVIWKYP 272 (318)
T ss_dssp TTTCCEEEEETT
T ss_pred cCCCEEEEEECC
Confidence 79999999964
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.2e-31 Score=201.66 Aligned_cols=194 Identities=7% Similarity=0.052 Sum_probs=134.1
Q ss_pred CCCCEEEEecCCCeEEEEEcccceEEee--eccceeeeccceeeEEeCC--------CCCeEEEEecCCeEEEEeCCCCc
Q 040370 29 PSGDFLLAGTDHPIAHLYDVNTFQCYLS--ANVPEISVNGAINQVRYSS--------TGGMYVTASKDGAIRLWDGVSAN 98 (228)
Q Consensus 29 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~--------~~~~l~~~~~dg~v~iwd~~~~~ 98 (228)
+++.+|++|+.|++|++||.+.++.... .....+| .+.|++++|+| ++++|++|+.|++|+|||++++.
T Consensus 99 ~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH-~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~ 177 (393)
T 4gq1_A 99 VYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGH-HNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG 177 (393)
T ss_dssp EEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSC-SSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCC-CCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc
Confidence 3556899999999999999998875432 2334445 89999999998 78899999999999999999888
Q ss_pred eeeEEecccccceeEEEEECCCC-CEEEEeeCCCeEEEEEccCCeeEEEEec-----------------------ceeee
Q 040370 99 CVRSIVGAHGTAEATSANFTKDQ-RFVLSCGKDSTVKLWEVSSGRLVKQYLG-----------------------ATHTQ 154 (228)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~-----------------------~~~~~ 154 (228)
....+..+ ...+.+++|+|++ .+|++++.|++|++||+++++....... ..+..
T Consensus 178 ~~~~~~~~--~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 255 (393)
T 4gq1_A 178 PILAGYPL--SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIAS 255 (393)
T ss_dssp EEEEEEEC--SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSS
T ss_pred eeeeecCC--CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccc
Confidence 87777766 5689999999987 4799999999999999998765433221 11334
Q ss_pred eeeEEEEC-CCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEE------------------EeCC--CCcEEE
Q 040370 155 LRFQAVFN-DTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWI------------------EHSP--AEAAFI 213 (228)
Q Consensus 155 ~~~~~~~~-~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~------------------~~~~--~~~~l~ 213 (228)
.+..+.|. +++..+++++. |+.+++||+..++....+ ..|...+..+ .++| ++.+++
T Consensus 256 ~v~~v~~~~~dg~~l~s~s~-d~~i~vwd~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (393)
T 4gq1_A 256 SLANVRWIGSDGSGILAMCK-SGAWLRWNLFANNDYNEI-SDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFAT 333 (393)
T ss_dssp SCSEEEEETTTTCEEEEECT-TSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEE
T ss_pred cceeeeeecCCCCEEEEEeC-CCCEEEEECccCCCCceE-eeecCccccEEEccccccccccCcceeEEEccCCCCEEEE
Confidence 45566665 77888777554 899999999887665544 3333333333 2333 445678
Q ss_pred EecCCCCEEEeeec
Q 040370 214 TCGTDRSVRFWKEI 227 (228)
Q Consensus 214 s~~~dg~i~vwd~~ 227 (228)
+|+.||.|++||+.
T Consensus 334 sgs~Dg~V~lwd~~ 347 (393)
T 4gq1_A 334 AHSQHGLIQLINTY 347 (393)
T ss_dssp EETTTTEEEEEETT
T ss_pred EECCCCEEEEEECC
Confidence 88999999999963
No 122
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.2e-30 Score=194.86 Aligned_cols=199 Identities=16% Similarity=0.254 Sum_probs=157.4
Q ss_pred ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCcee
Q 040370 21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCV 100 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 100 (228)
.++.|+|+++ +.||+|. |++|+|||..+++....+... .| ...|++++|+|+|++|++|+.||.|++||+++++.+
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~-~~-~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQME-QP-GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 182 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECC-ST-TCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEec-CC-CCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE
Confidence 4677999975 5777776 899999999999877655432 22 678999999999999999999999999999988776
Q ss_pred eEEeccc---------------------------------------ccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC
Q 040370 101 RSIVGAH---------------------------------------GTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG 141 (228)
Q Consensus 101 ~~~~~~~---------------------------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~ 141 (228)
..+..|. +...+..+.++|+++++++++.|+.+++||..++
T Consensus 183 ~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~ 262 (420)
T 4gga_A 183 RNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 262 (420)
T ss_dssp EEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred EEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence 6654331 2456677788888888899999999999988765
Q ss_pred ee----EEEEecceeeeeeeEEEECCCCcEEEE--eeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEe
Q 040370 142 RL----VKQYLGATHTQLRFQAVFNDTEEFVLS--IDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITC 215 (228)
Q Consensus 142 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 215 (228)
+. +.... .+...+..+.|+|.+..+++ +++.|+.|++||+++++....+ .+...+.++.|+|+++.++++
T Consensus 263 ~~~~~~~~~~~--~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~--~~~~~v~~~~~~~~~~~lv~~ 338 (420)
T 4gga_A 263 EGGWVPLQTFT--QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--DAHSQVCSILWSPHYKELISG 338 (420)
T ss_dssp SSCSCCSEEEC--CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE--ECSSCEEEEEEETTTTEEEEE
T ss_pred cccceeeeeec--ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee--ccccceeeeeecCCCCeEEEE
Confidence 43 22232 26677889999998776554 3557899999999999988887 345678999999999988876
Q ss_pred c--CCCCEEEeeec
Q 040370 216 G--TDRSVRFWKEI 227 (228)
Q Consensus 216 ~--~dg~i~vwd~~ 227 (228)
+ .|+.|+|||+.
T Consensus 339 sg~~d~~I~iwd~~ 352 (420)
T 4gga_A 339 HGFAQNQLVIWKYP 352 (420)
T ss_dssp ECTTTCCEEEEETT
T ss_pred EecCCCEEEEEECC
Confidence 4 79999999963
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.98 E-value=8.1e-30 Score=193.81 Aligned_cols=198 Identities=12% Similarity=0.117 Sum_probs=168.5
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCCeEEEEeCC
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDGAIRLWDGV 95 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~ 95 (228)
+|...|.+++|+|++.++++++.|+.|++||+++++....... + ...+.+++|+|+++.++ +++.|+.|++||++
T Consensus 167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~ 242 (433)
T 3bws_A 167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDL---T-GKWSKILLYDPIRDLVYCSNWISEDISVIDRK 242 (433)
T ss_dssp TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEEC---S-SSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcC---C-CCCeeEEEEcCCCCEEEEEecCCCcEEEEECC
Confidence 6788999999999999999999999999999998887665542 2 67899999999999775 55589999999999
Q ss_pred CCceeeEEecccccceeEEEEECCCCCEEEEee--------CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370 96 SANCVRSIVGAHGTAEATSANFTKDQRFVLSCG--------KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF 167 (228)
Q Consensus 96 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (228)
+++....+.. ...+.+++|+|+++++++++ .|+.|++||+++++....+. +...+..+.|+|+++.
T Consensus 243 ~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~ 316 (433)
T 3bws_A 243 TKLEIRKTDK---IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG---PPGNKRHIVSGNTENK 316 (433)
T ss_dssp TTEEEEECCC---CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE---EEECEEEEEECSSTTE
T ss_pred CCcEEEEecC---CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc---CCCCcceEEECCCCCE
Confidence 9988777665 34689999999999999888 48899999999988776653 4456778999999998
Q ss_pred EEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecC---------------CCCEEEeee
Q 040370 168 VLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGT---------------DRSVRFWKE 226 (228)
Q Consensus 168 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---------------dg~i~vwd~ 226 (228)
+++++..|+.|++||+.+++....+ .+...+.+++|+|++++|++++. ||.|++||+
T Consensus 317 l~~~~~~~~~v~v~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~ 388 (433)
T 3bws_A 317 IYVSDMCCSKIEVYDLKEKKVQKSI--PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT 388 (433)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEE--ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEET
T ss_pred EEEEecCCCEEEEEECCCCcEEEEe--cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEEC
Confidence 8888777999999999988887776 36778999999999998888776 579999996
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.98 E-value=8.4e-29 Score=188.24 Aligned_cols=212 Identities=11% Similarity=0.109 Sum_probs=171.4
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM 79 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 79 (228)
+||+... +....+..|...+.+++|+|++++++ +++.++.|++||+.+++....... ...+.+++|+|+++.
T Consensus 195 ~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~ 267 (433)
T 3bws_A 195 VFDLKTL--AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-----IGLPRGLLLSKDGKE 267 (433)
T ss_dssp EEETTTC--CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-----CSEEEEEEECTTSSE
T ss_pred EEECCCc--eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-----CCCceEEEEcCCCCE
Confidence 4666533 33344457889999999999999885 555899999999999887665543 345899999999999
Q ss_pred EEEEe--------cCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEE-EEeeCCCeEEEEEccCCeeEEEEecc
Q 040370 80 YVTAS--------KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFV-LSCGKDSTVKLWEVSSGRLVKQYLGA 150 (228)
Q Consensus 80 l~~~~--------~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~ 150 (228)
+++++ .||.|++||+++++....+.. ...+.+++|+|+++.+ ++++.|+.|++||+++++....+.
T Consensus 268 l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-- 342 (433)
T 3bws_A 268 LYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP---PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-- 342 (433)
T ss_dssp EEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE---EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE--
T ss_pred EEEEECCCCccccCCCeEEEEECCCCcEEeeccC---CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec--
Confidence 99888 488999999998887766533 4578899999999754 666899999999999988877765
Q ss_pred eeeeeeeEEEECCCCcEEEEeeCC--------------CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEec
Q 040370 151 THTQLRFQAVFNDTEEFVLSIDEP--------------SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCG 216 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~--------------d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 216 (228)
+...+..++++|+++++++++.. ||.|++||..+++....+. . ...+.+++|+|++++|++++
T Consensus 343 -~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~-~-~~~~~~~~~s~dg~~l~~~~ 419 (433)
T 3bws_A 343 -VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE-A-GNQPTGLDVSPDNRYLVISD 419 (433)
T ss_dssp -CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE-C-SSSEEEEEECTTSCEEEEEE
T ss_pred -CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec-C-CCCCceEEEcCCCCEEEEEE
Confidence 34557789999999988887664 4699999999998888773 3 55789999999999998876
Q ss_pred C-CCCEEEeeec
Q 040370 217 T-DRSVRFWKEI 227 (228)
Q Consensus 217 ~-dg~i~vwd~~ 227 (228)
. |+.|++|++.
T Consensus 420 ~~d~~i~v~~~~ 431 (433)
T 3bws_A 420 FLDHQIRVYRRD 431 (433)
T ss_dssp TTTTEEEEEEET
T ss_pred CCCCeEEEEEec
Confidence 4 9999999974
No 125
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=3.5e-29 Score=184.53 Aligned_cols=185 Identities=15% Similarity=0.271 Sum_probs=145.0
Q ss_pred CCcCCcccc--ceeEEEeecCcceEEEEEeC--CCCEEEEecCCCeEEEEEcccce---------EEeeeccceeeeccc
Q 040370 1 FFDFSKATA--KRAFRVIQDTHNVRSVSFHP--SGDFLLAGTDHPIAHLYDVNTFQ---------CYLSANVPEISVNGA 67 (228)
Q Consensus 1 iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~~~---------~~~~~~~~~~~~~~~ 67 (228)
|||+..... .....+.+|..+|.+++|+| ++++|++|+.||.|++||+..++ ...... .| ...
T Consensus 37 iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~---~~-~~~ 112 (351)
T 3f3f_A 37 VFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN---DS-KGS 112 (351)
T ss_dssp EEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC---CC-SSC
T ss_pred EEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeec---cc-CCc
Confidence 477765433 33445568999999999999 69999999999999999998863 233222 22 789
Q ss_pred eeeEEeCCC--CCeEEEEecCCeEEEEeCCCCceee--------------------------------------------
Q 040370 68 INQVRYSST--GGMYVTASKDGAIRLWDGVSANCVR-------------------------------------------- 101 (228)
Q Consensus 68 i~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~~~~~-------------------------------------------- 101 (228)
|.+++|+|+ ++++++++.||.|++||+++++.+.
T Consensus 113 v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 192 (351)
T 3f3f_A 113 LYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ 192 (351)
T ss_dssp EEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE
T ss_pred eeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCC
Confidence 999999999 9999999999999999987654211
Q ss_pred --------------EEecccccceeEEEEECCCC----CEEEEeeCCCeEEEEEccCC----------------------
Q 040370 102 --------------SIVGAHGTAEATSANFTKDQ----RFVLSCGKDSTVKLWEVSSG---------------------- 141 (228)
Q Consensus 102 --------------~~~~~~~~~~i~~~~~~~~~----~~l~~~~~d~~i~~wd~~~~---------------------- 141 (228)
......+...|.+++|+|++ ++|++++.||.|++||++.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (351)
T 3f3f_A 193 AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADV 272 (351)
T ss_dssp EEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------
T ss_pred cEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccc
Confidence 11111236789999999998 89999999999999999875
Q ss_pred ------------------------eeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe
Q 040370 142 ------------------------RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW 192 (228)
Q Consensus 142 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 192 (228)
+.+..+.+ |...+.++.|+|++.++++++. ||.|++||+.+++....+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 273 DMDAQGRSDSNTEEKAELQSNLQVELLSEHDD--HNGEVWSVSWNLTGTILSSAGD-DGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp ------------------CCSEEEEEEEEECT--TSSCEEEEEECSSSCCEEEEET-TSCEEEEEECTTSCEEEE
T ss_pred ccccccccccccceeeeecccccccEEEEEec--ccccEEEEEEcCCCCEEEEecC-CCcEEEEecCcCcchhhe
Confidence 34444444 5677999999999999888766 899999999988765544
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=8.6e-28 Score=181.79 Aligned_cols=209 Identities=14% Similarity=0.114 Sum_probs=161.6
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCC---eEEEEEcccceEEeeeccceeeeccceeeEEeCCCC
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHP---IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG 77 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 77 (228)
+||+.. .....+.+|...+.+++|+|+|++|++++.++ .|++||+.+++...... + ...+.+++|+|+|
T Consensus 163 i~d~~g---~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~----~-~~~~~~~~~spdg 234 (415)
T 2hqs_A 163 VSDYDG---YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS----F-PRHNGAPAFSPDG 234 (415)
T ss_dssp EEETTS---CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC----C-SSCEEEEEECTTS
T ss_pred EEcCCC---CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeec----C-CCcccCEEEcCCC
Confidence 356552 33456667999999999999999999998875 99999999887643221 2 5679999999999
Q ss_pred CeEE-EEecCCe--EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-CC--eEEEEEccCCeeEEEEecce
Q 040370 78 GMYV-TASKDGA--IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-DS--TVKLWEVSSGRLVKQYLGAT 151 (228)
Q Consensus 78 ~~l~-~~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~~~~~ 151 (228)
+.|+ +++.++. |++||+++++. ..+..+ ...+.+++|+|++++|++++. ++ .|++||+.+++.. .+..
T Consensus 235 ~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~--~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~-- 308 (415)
T 2hqs_A 235 SKLAFALSKTGSLNLYVMDLASGQI-RQVTDG--RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITW-- 308 (415)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCE-EECCCC--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCC--
T ss_pred CEEEEEEecCCCceEEEEECCCCCE-EeCcCC--CCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEec--
Confidence 9877 6666654 99999988775 344443 567899999999999988876 44 6888899877643 2322
Q ss_pred eeeeeeEEEECCCCcEEEEeeCCC--CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCC---CEEEeee
Q 040370 152 HTQLRFQAVFNDTEEFVLSIDEPS--NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDR---SVRFWKE 226 (228)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg---~i~vwd~ 226 (228)
+...+..+.|+|++++++.++..+ ..|++||+.+++.. .+ ..+. .+.+++|+|++++|++++.|+ .|.+||+
T Consensus 309 ~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l-~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 309 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VL-SSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVST 385 (415)
T ss_dssp SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-EC-CCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Ee-cCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEEC
Confidence 345677899999999998877643 58999999988764 33 3443 899999999999999988777 6888885
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=6.2e-29 Score=179.17 Aligned_cols=167 Identities=10% Similarity=0.106 Sum_probs=126.8
Q ss_pred ceeEEEeecCcceEEEEEeC---CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE------
Q 040370 10 KRAFRVIQDTHNVRSVSFHP---SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY------ 80 (228)
Q Consensus 10 ~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l------ 80 (228)
+....+..|...++.++|+| ++.+|++|+.|++|+|||+++++++..+.....+ ...+.+++|+|+|+++
T Consensus 169 ~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~-v~~v~~vafSpdG~~lvs~s~~ 247 (356)
T 2w18_A 169 GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY-QASVCHKAYSEMGLLFIVLSHP 247 (356)
T ss_dssp CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC----CCCEEEEEEETTEEEEEEC--
T ss_pred ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc-eeeeEEEEECCCCCEEEEeccC
Confidence 34455567888888888888 7799999999999999999999988877543222 4567888999999876
Q ss_pred ------EEEecCCeEEEEeCCCCceeeEEe----cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecc
Q 040370 81 ------VTASKDGAIRLWDGVSANCVRSIV----GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA 150 (228)
Q Consensus 81 ------~~~~~dg~v~iwd~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 150 (228)
++|+.|++|++||..+++.+..+. ..+ ...+.+..+ ++.++++++.|++|++||+.+++.+.++.+
T Consensus 248 ~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh-~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~g- 323 (356)
T 2w18_A 248 CAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQ-AGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPP- 323 (356)
T ss_dssp ----------CCEEEEEEETTTTEEEEEEEECCCTTC-CCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECC-
T ss_pred CCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCC-cceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecC-
Confidence 568889999999999998776552 111 223333333 378899999999999999999999999876
Q ss_pred eeeee-eeEEEECCCCcEEEEeeCCCCeEEEEEc
Q 040370 151 THTQL-RFQAVFNDTEEFVLSIDEPSNEIVIWDA 183 (228)
Q Consensus 151 ~~~~~-~~~~~~~~~~~~~~~~~~~d~~i~i~d~ 183 (228)
|... +..++|+|+++++++++ .|++|++||+
T Consensus 324 -H~~~vvs~vafSPDG~~LaSGS-~D~TIklWd~ 355 (356)
T 2w18_A 324 -VSDQHWSFVKWSGTDSHLLAGQ-KDGNIFVYHY 355 (356)
T ss_dssp -C--CCCCEEEECSSSSEEEEEC-TTSCEEEEEE
T ss_pred -CCCCeEEEEEECCCCCEEEEEE-CCCcEEEecC
Confidence 3333 34589999999988865 4899999995
No 128
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.96 E-value=7.6e-27 Score=177.36 Aligned_cols=204 Identities=9% Similarity=0.012 Sum_probs=150.6
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceE-----------EeeeccceeeeccceeeEEeCCCCCeEE----EE
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQC-----------YLSANVPEISVNGAINQVRYSSTGGMYV----TA 83 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~-----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~----~~ 83 (228)
...++.+++++++.++++++.++ +++|+...... .........++...|.+++|+|++++|+ +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 34588999999999999999887 88988653211 1111111122356799999999999999 78
Q ss_pred ecCCeEEEEeCCCC--------ceeeEEec-ccccceeEEEEECCC-CCEEEEeeCCCeEEEEEccCCeeEEEEecceee
Q 040370 84 SKDGAIRLWDGVSA--------NCVRSIVG-AHGTAEATSANFTKD-QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHT 153 (228)
Q Consensus 84 ~~dg~v~iwd~~~~--------~~~~~~~~-~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 153 (228)
+.|+.|++||++++ +.+..+.. ..|...|.+++|+|+ +.+|++++.||+|++||++++........ +.
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~--~~ 192 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP--ST 192 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC--GG
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC--CC
Confidence 88999999998765 22222221 123778999999997 88999999999999999998866555444 56
Q ss_pred eeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec------CCCCCcEEEEeCCCCcEEEEe-cCCCC------
Q 040370 154 QLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS------NHIGAPRWIEHSPAEAAFITC-GTDRS------ 220 (228)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~-~~dg~------ 220 (228)
..+.+++|+|++.++++++. ||.|++||.+ ++....+.. .|...+.+++|++++.++++. ..||.
T Consensus 193 ~~v~~v~wspdg~~lasgs~-dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~ 270 (434)
T 2oit_A 193 VAVTSVCWSPKGKQLAVGKQ-NGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPD 270 (434)
T ss_dssp GCEEEEEECTTSSCEEEEET-TSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCE
T ss_pred CceeEEEEcCCCCEEEEEcC-CCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCc
Confidence 77899999999999998765 8999999998 554444421 123379999999988877543 34433
Q ss_pred EEEeeec
Q 040370 221 VRFWKEI 227 (228)
Q Consensus 221 i~vwd~~ 227 (228)
+++|++.
T Consensus 271 v~i~~l~ 277 (434)
T 2oit_A 271 VVMALLP 277 (434)
T ss_dssp EEEEECC
T ss_pred eEEEEec
Confidence 8899864
No 129
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.95 E-value=3.7e-26 Score=164.82 Aligned_cols=211 Identities=10% Similarity=0.138 Sum_probs=156.2
Q ss_pred CcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEccc-ceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370 2 FDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNT-FQCYLSANVPEISVNGAINQVRYSSTGGMY 80 (228)
Q Consensus 2 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 80 (228)
||+... +...+..|...|.+++|+|++++|++++ ++.|.+||+.+ ++........ ....+.+++|+|+++++
T Consensus 27 ~d~~~~---~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~spdg~~l 99 (297)
T 2ojh_A 27 FNIRTR---KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGF---ATICNNDHGISPDGALY 99 (297)
T ss_dssp EETTTT---EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTT---CCCBCSCCEECTTSSEE
T ss_pred EeCCCC---ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccc---ccccccceEECCCCCEE
Confidence 555533 3445667899999999999999999987 78999999998 7655443322 14678999999999999
Q ss_pred EEEe--cCCeEEEE--eCCCCceeeEEecccccceeEEEEECCCCCEEE-EeeCCCeEEEEEccC-CeeEEEEecceeee
Q 040370 81 VTAS--KDGAIRLW--DGVSANCVRSIVGAHGTAEATSANFTKDQRFVL-SCGKDSTVKLWEVSS-GRLVKQYLGATHTQ 154 (228)
Q Consensus 81 ~~~~--~dg~v~iw--d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~ 154 (228)
++++ .++...|| ++.+++ ...+.. ...+..++|+|++++|+ +++.++.+++|+++. ......+.. +..
T Consensus 100 ~~~~~~~~~~~~l~~~~~~~~~-~~~~~~---~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~ 173 (297)
T 2ojh_A 100 AISDKVEFGKSAIYLLPSTGGT-PRLMTK---NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH--GEG 173 (297)
T ss_dssp EEEECTTTSSCEEEEEETTCCC-CEECCS---SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC--SSS
T ss_pred EEEEeCCCCcceEEEEECCCCc-eEEeec---CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc--CCC
Confidence 9998 33445555 544444 333333 23488899999999877 788899999998643 223333332 455
Q ss_pred eeeEEEECCCCcEEEEeeCCCCeEEEEEcC-CcceeEEeecCCCCCcEEEEeCCCCcEEEEecCC-----------CCEE
Q 040370 155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDAL-TAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTD-----------RSVR 222 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----------g~i~ 222 (228)
.+..+.|+|++++++.++..++.+++|++. .+.....+ ..|...+..++|+|++++|++++.+ +.|.
T Consensus 174 ~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~ 252 (297)
T 2ojh_A 174 RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI-TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQ 252 (297)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC-CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred ccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE-ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEE
Confidence 678899999999988877667999999986 44455555 5677889999999999999988866 4589
Q ss_pred Eeee
Q 040370 223 FWKE 226 (228)
Q Consensus 223 vwd~ 226 (228)
+||+
T Consensus 253 ~~d~ 256 (297)
T 2ojh_A 253 LMDM 256 (297)
T ss_dssp EEET
T ss_pred EEec
Confidence 9985
No 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=1.6e-25 Score=164.99 Aligned_cols=220 Identities=17% Similarity=0.235 Sum_probs=155.0
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCC-CeEEEEEcc--cceEEeeeccceeeeccceeeEEeCCCC
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDH-PIAHLYDVN--TFQCYLSANVPEISVNGAINQVRYSSTG 77 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~vw~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 77 (228)
+||++............+...+.+++|+|++++|++++.+ +.|.+|++. +++......... ...+..++|+|++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~dg 95 (343)
T 1ri6_A 19 VWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL---PGSLTHISTDHQG 95 (343)
T ss_dssp EEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC---SSCCSEEEECTTS
T ss_pred EEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc---CCCCcEEEEcCCC
Confidence 4666432222344556788899999999999988888776 999999998 554322211111 3478999999999
Q ss_pred CeEEEEe-cCCeEEEEeCCC---CceeeEEecccccceeEEEEECCCCCEEEEee-CCCeEEEEEccC-CeeEEE----E
Q 040370 78 GMYVTAS-KDGAIRLWDGVS---ANCVRSIVGAHGTAEATSANFTKDQRFVLSCG-KDSTVKLWEVSS-GRLVKQ----Y 147 (228)
Q Consensus 78 ~~l~~~~-~dg~v~iwd~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~~-~~~~~~----~ 147 (228)
+++++++ .++.|.+||+.. .+....+.. ...+.+++|+|+++++++++ .++.|++||+.+ ++.... .
T Consensus 96 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 172 (343)
T 1ri6_A 96 QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG---LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV 172 (343)
T ss_dssp SEEEEEETTTTEEEEEEEETTEEEEEEEEECC---CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE
T ss_pred CEEEEEecCCCeEEEEECCCCccccccccccC---CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccc
Confidence 9777665 488999999943 334444433 34578899999999888877 899999999987 544322 2
Q ss_pred ecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC--cce--eEEee---cCC--CCCcEEEEeCCCCcEEE-EecC
Q 040370 148 LGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT--AEK--VAKWS---SNH--IGAPRWIEHSPAEAAFI-TCGT 217 (228)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~~--~~~~~---~~~--~~~v~~~~~~~~~~~l~-s~~~ 217 (228)
... .......+.|+|+++++++++..++.|.+||+.. ++. ..... .++ ...+..++|+|++++|+ ++..
T Consensus 173 ~~~-~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~ 251 (343)
T 1ri6_A 173 TTV-EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT 251 (343)
T ss_dssp ECS-TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT
T ss_pred ccC-CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC
Confidence 211 2235567899999999888876789999999954 332 11221 111 23566899999998776 5557
Q ss_pred CCCEEEeeec
Q 040370 218 DRSVRFWKEI 227 (228)
Q Consensus 218 dg~i~vwd~~ 227 (228)
++.|.+||+.
T Consensus 252 ~~~i~v~d~~ 261 (343)
T 1ri6_A 252 ASLITVFSVS 261 (343)
T ss_dssp TTEEEEEEEC
T ss_pred CCEEEEEEEc
Confidence 9999999974
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=2.2e-26 Score=174.09 Aligned_cols=214 Identities=7% Similarity=0.033 Sum_probs=159.3
Q ss_pred CCcC--CccccceeEEEeecCcceEEEEEeC--------------CCCEEEEecCC------CeEEEEEcccceEEeeec
Q 040370 1 FFDF--SKATAKRAFRVIQDTHNVRSVSFHP--------------SGDFLLAGTDH------PIAHLYDVNTFQCYLSAN 58 (228)
Q Consensus 1 iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~--------------~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~ 58 (228)
|||+ .+.+......+.+|...+..+++++ .+..++.++.+ +.|++||++.+.. ..+
T Consensus 97 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-~~l- 174 (415)
T 2hqs_A 97 LVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-FVV- 174 (415)
T ss_dssp EEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC-EEE-
T ss_pred EEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC-EEE-
Confidence 5777 5444333345678888888888775 15566655543 7999999975432 222
Q ss_pred cceeeeccceeeEEeCCCCCeEEEEecCC---eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEE-EeeCCCe--
Q 040370 59 VPEISVNGAINQVRYSSTGGMYVTASKDG---AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVL-SCGKDST-- 132 (228)
Q Consensus 59 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~-- 132 (228)
..+ ...+.+++|+|+|+.|++++.++ .|++||+++++... +..+ ...+.+++|+|++++|+ +++.++.
T Consensus 175 --~~~-~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~~--~~~~~~~~~spdg~~la~~~~~~g~~~ 248 (415)
T 2hqs_A 175 --HRS-PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASF--PRHNGAPAFSPDGSKLAFALSKTGSLN 248 (415)
T ss_dssp --EEE-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECC--SSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred --eCC-CCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-eecC--CCcccCEEEcCCCCEEEEEEecCCCce
Confidence 223 77899999999999999999875 99999999887653 4443 56889999999999887 6666554
Q ss_pred EEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC--eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc
Q 040370 133 VKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN--EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA 210 (228)
Q Consensus 133 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (228)
|++||+++++. ..+.. +...+..+.|+|++++++.++..++ .|++||+.+++... + ..+...+.+++|+|+|+
T Consensus 249 i~~~d~~~~~~-~~l~~--~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l-~~~~~~~~~~~~spdG~ 323 (415)
T 2hqs_A 249 LYVMDLASGQI-RQVTD--GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-I-TWEGSQNQDADVSSDGK 323 (415)
T ss_dssp EEEEETTTCCE-EECCC--CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-C-CCSSSEEEEEEECTTSS
T ss_pred EEEEECCCCCE-EeCcC--CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-E-ecCCCcccCeEECCCCC
Confidence 99999988765 34433 4567788999999999888776455 68888988776433 3 35667889999999999
Q ss_pred EEEEecCC---CCEEEeeec
Q 040370 211 AFITCGTD---RSVRFWKEI 227 (228)
Q Consensus 211 ~l~s~~~d---g~i~vwd~~ 227 (228)
+|++++.+ ..|.+||+.
T Consensus 324 ~l~~~~~~~g~~~i~~~d~~ 343 (415)
T 2hqs_A 324 FMVMVSSNGGQQHIAKQDLA 343 (415)
T ss_dssp EEEEEEECSSCEEEEEEETT
T ss_pred EEEEEECcCCceEEEEEECC
Confidence 99988764 579999863
No 132
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.95 E-value=4.8e-26 Score=172.94 Aligned_cols=167 Identities=14% Similarity=0.150 Sum_probs=132.6
Q ss_pred eecCcceEEEEEeCCCCEEE----EecCCCeEEEEEcccc--------eEEeeeccceeeeccceeeEEeCCC-CCeEEE
Q 040370 16 IQDTHNVRSVSFHPSGDFLL----AGTDHPIAHLYDVNTF--------QCYLSANVPEISVNGAINQVRYSST-GGMYVT 82 (228)
Q Consensus 16 ~~~~~~v~~~~~~~~~~~l~----~~~~d~~i~vw~~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~ 82 (228)
..+...|.+++|+|++++|+ +|+.|+.|++||+.++ +.+........| ...|.+++|+|+ +++|++
T Consensus 89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~~~las 167 (434)
T 2oit_A 89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDA-GGMVIDMKWNPTVPSMVAV 167 (434)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSG-GGSEEEEEECSSCTTEEEE
T ss_pred ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCC-CCceEEEEECCCCCCEEEE
Confidence 35677899999999999999 7889999999999875 222222333333 889999999997 789999
Q ss_pred EecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce-----eeeeee
Q 040370 83 ASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT-----HTQLRF 157 (228)
Q Consensus 83 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-----~~~~~~ 157 (228)
++.||+|++||++++........+ ...+.+++|+|++++|++|+.||.|++||++ ++....+..+. +...+.
T Consensus 168 ~s~Dg~v~iwD~~~~~~~~~~~~~--~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~ 244 (434)
T 2oit_A 168 CLADGSIAVLQVTETVKVCATLPS--TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVL 244 (434)
T ss_dssp EETTSCEEEEEESSSEEEEEEECG--GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEE
T ss_pred EECCCeEEEEEcCCCcceeeccCC--CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEE
Confidence 999999999999988665555443 6789999999999999999999999999998 55555543321 234788
Q ss_pred EEEECCCCcEEEEeeCCCC------eEEEEEcCCc
Q 040370 158 QAVFNDTEEFVLSIDEPSN------EIVIWDALTA 186 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~~~d~------~i~i~d~~~~ 186 (228)
++.|++++.++++....|| .+++|++++.
T Consensus 245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 9999999988877665443 3899999865
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=1.5e-24 Score=159.80 Aligned_cols=203 Identities=13% Similarity=0.203 Sum_probs=143.7
Q ss_pred CcceEEEEEeCCCCEEEEec-CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe-cCCeEEEEeCCC
Q 040370 19 THNVRSVSFHPSGDFLLAGT-DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS-KDGAIRLWDGVS 96 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~iwd~~~ 96 (228)
...+..++|+|++++|++++ .++.|.+||+..+.......... . ...+.+++|+|+++++++++ .++.|.+||+.+
T Consensus 83 ~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 83 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-G-LDGCHSANISPDNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-C-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-C-CCCceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence 34889999999999887665 48899999995332221111111 1 44688999999999888777 899999999987
Q ss_pred -Cceee----EEecccccceeEEEEECCCCCEEEEee-CCCeEEEEEccC--Cee--EEEEecc----eeeeeeeEEEEC
Q 040370 97 -ANCVR----SIVGAHGTAEATSANFTKDQRFVLSCG-KDSTVKLWEVSS--GRL--VKQYLGA----THTQLRFQAVFN 162 (228)
Q Consensus 97 -~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~~--~~~--~~~~~~~----~~~~~~~~~~~~ 162 (228)
++... ...... ...+..++|+|+++++++++ .++.|.+||+.. ++. ....... ........+.|+
T Consensus 161 ~~~~~~~~~~~~~~~~-~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s 239 (343)
T 1ri6_A 161 DGHLVAQDPAEVTTVE-GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT 239 (343)
T ss_dssp TSCEEEEEEEEEECST-TCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred CCceeeecccccccCC-CCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC
Confidence 54432 222222 45678899999999776554 789999999953 332 2222210 112345578999
Q ss_pred CCCcEEEEeeCCCCeEEEEEcC--Cc--ceeEEeecCCCCCcEEEEeCCCCcEEEEec-CCCCEEEeee
Q 040370 163 DTEEFVLSIDEPSNEIVIWDAL--TA--EKVAKWSSNHIGAPRWIEHSPAEAAFITCG-TDRSVRFWKE 226 (228)
Q Consensus 163 ~~~~~~~~~~~~d~~i~i~d~~--~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~ 226 (228)
|+++++++++..++.|.+||+. ++ +.+..+ ..+. .+..++|+|++++|++++ .++.|.+|++
T Consensus 240 ~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 240 PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ-PTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE-ECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred CCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee-cCCC-ccceEEECCCCCEEEEecCCCCeEEEEEE
Confidence 9999998877778999999998 22 333333 2333 388999999999888877 6899999965
No 134
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.95 E-value=2.2e-24 Score=159.52 Aligned_cols=223 Identities=9% Similarity=0.097 Sum_probs=152.6
Q ss_pred CcCCccccceeEEEeecCcceEEEEEeCCCCEEEEec-CCCeEEEEEccc-ceE--Eeeeccceee-----eccceeeEE
Q 040370 2 FDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGT-DHPIAHLYDVNT-FQC--YLSANVPEIS-----VNGAINQVR 72 (228)
Q Consensus 2 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~-~~~--~~~~~~~~~~-----~~~~i~~~~ 72 (228)
||+.....+.......+...+..++|+|++++|++++ .++.|.+|++.. +.. +......... ....+.+++
T Consensus 68 ~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 147 (347)
T 3hfq_A 68 WQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTD 147 (347)
T ss_dssp EEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEE
T ss_pred EEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEE
Confidence 5554444444444456778899999999999888877 789999999963 322 2211110000 023478899
Q ss_pred eCCCCCeEEEEecCCeEEEEeCC-CCceee--EEecccccceeEEEEECCCCCEEEE-eeCCCeEEEEEccC--CeeE--
Q 040370 73 YSSTGGMYVTASKDGAIRLWDGV-SANCVR--SIVGAHGTAEATSANFTKDQRFVLS-CGKDSTVKLWEVSS--GRLV-- 144 (228)
Q Consensus 73 ~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~~wd~~~--~~~~-- 144 (228)
|+|+|+++++...++.|.+|++. +++... .+.... ......++|+|+++++++ ...++.|.+|++.. ++..
T Consensus 148 ~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~ 226 (347)
T 3hfq_A 148 LTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA-GFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQL 226 (347)
T ss_dssp ECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCT-TCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred ECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC-CCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEe
Confidence 99999966677778999999998 454332 222221 335678999999996665 56788999999874 4432
Q ss_pred EEEeccee----eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCc---ceeEEeecCCCCCcEEEEeCCCCcEEEEecC
Q 040370 145 KQYLGATH----TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA---EKVAKWSSNHIGAPRWIEHSPAEAAFITCGT 217 (228)
Q Consensus 145 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 217 (228)
..+..... ......++|+|+++++++++..++.|.+|++... +.+..+ ..+...+..++|+|++++|++++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~-~~~~~~~~~~~~spdg~~l~v~~~ 305 (347)
T 3hfq_A 227 GIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQI-STEGDFPRDFDLDPTEAFVVVVNQ 305 (347)
T ss_dssp EEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEE-ECSSSCCCEEEECTTSSEEEEEET
T ss_pred eeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEE-ecCCCCcCeEEECCCCCEEEEEEc
Confidence 22221111 1346789999999998777776899999998733 333333 345567889999999998887775
Q ss_pred -CCCEEEeee
Q 040370 218 -DRSVRFWKE 226 (228)
Q Consensus 218 -dg~i~vwd~ 226 (228)
++.|.+|++
T Consensus 306 ~~~~v~v~~~ 315 (347)
T 3hfq_A 306 NTDNATLYAR 315 (347)
T ss_dssp TTTEEEEEEE
T ss_pred CCCcEEEEEE
Confidence 489999965
No 135
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=1.7e-24 Score=168.63 Aligned_cols=194 Identities=12% Similarity=0.055 Sum_probs=159.2
Q ss_pred EEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC--CCCceeeEE
Q 040370 26 SFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG--VSANCVRSI 103 (228)
Q Consensus 26 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~--~~~~~~~~~ 103 (228)
+++|++..+++++.+++|.+||..+++.+..+... ..+..++|+|+|+++++++.|+.|.+||+ .+++.+..+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g-----~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i 218 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-----YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI 218 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECS-----TTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecC-----cccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence 48899999999999999999999999887766532 23889999999999999999999999999 788888877
Q ss_pred ecccccceeEEEEECC----CCCEEEEeeC-CCeEEEEEccCCeeEEEEecce--------e-eeeeeEEEECCCCcEEE
Q 040370 104 VGAHGTAEATSANFTK----DQRFVLSCGK-DSTVKLWEVSSGRLVKQYLGAT--------H-TQLRFQAVFNDTEEFVL 169 (228)
Q Consensus 104 ~~~~~~~~i~~~~~~~----~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~ 169 (228)
.. ...+..++|+| +++++++++. +++|.+||..+++.+..+.... + ...+..+.++|++..++
T Consensus 219 ~~---g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 219 KI---GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp EC---CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred ec---CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence 64 44679999999 9999998884 8999999999999888876422 1 22567889999988888
Q ss_pred EeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEe-cCCCCEEEeeec
Q 040370 170 SIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITC-GTDRSVRFWKEI 227 (228)
Q Consensus 170 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~ 227 (228)
++...++.|.+||..+.+.+......+...+..+.|+|++++|+++ ..+++|.+||+.
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~ 354 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSK 354 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred EEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECC
Confidence 8888899999999988765542222456678899999999977655 568999999963
No 136
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=6.5e-24 Score=165.34 Aligned_cols=197 Identities=12% Similarity=0.125 Sum_probs=156.1
Q ss_pred ceEEEEEeCCCCEEEEecCCCeEEEEEc--ccceEEeeeccceeeeccceeeEEeCC----CCCeEEEEec-CCeEEEEe
Q 040370 21 NVRSVSFHPSGDFLLAGTDHPIAHLYDV--NTFQCYLSANVPEISVNGAINQVRYSS----TGGMYVTASK-DGAIRLWD 93 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~-dg~v~iwd 93 (228)
.+..++|+|++++|++++.|+.|.+||+ .+++.+..+.. ...+..++|+| +|+++++++. +++|.+||
T Consensus 180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-----g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D 254 (543)
T 1nir_A 180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-----GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMD 254 (543)
T ss_dssp TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-----CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEE
T ss_pred ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-----CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEe
Confidence 3899999999999999999999999999 78776665542 45678999999 9999998884 89999999
Q ss_pred CCCCceeeEEeccc---------ccceeEEEEECCCCC-EEEEeeCCCeEEEEEccCCeeEE--EEecceeeeeeeEEEE
Q 040370 94 GVSANCVRSIVGAH---------GTAEATSANFTKDQR-FVLSCGKDSTVKLWEVSSGRLVK--QYLGATHTQLRFQAVF 161 (228)
Q Consensus 94 ~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~ 161 (228)
..+++.+..+.... ....+..+.++|++. ++++...++.|.+||+.+.+.+. .+. .......+.|
T Consensus 255 ~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~---~~~~~~~~~~ 331 (543)
T 1nir_A 255 GETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG---AAPFLHDGGW 331 (543)
T ss_dssp TTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE---CCSSCCCEEE
T ss_pred ccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec---cCcCccCceE
Confidence 99999888876521 133688999999765 56677788999999998866544 222 3445677899
Q ss_pred CCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecC---CCCCcEEEEeCCC-CcEEEEec-CCCCEEEeee
Q 040370 162 NDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN---HIGAPRWIEHSPA-EAAFITCG-TDRSVRFWKE 226 (228)
Q Consensus 162 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~-~~~l~s~~-~dg~i~vwd~ 226 (228)
+|+++++++++..++.|.+||..+++....+..+ |.+....+ ++|+ +..++++. .|++|.+||+
T Consensus 332 spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~ 400 (543)
T 1nir_A 332 DSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGT 400 (543)
T ss_dssp CTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred CCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEe
Confidence 9999999888877899999999999988777432 65544444 4676 66777775 6899999986
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=3.2e-24 Score=157.55 Aligned_cols=215 Identities=10% Similarity=0.091 Sum_probs=154.0
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecC-CCeEEEEEcccceE-EeeeccceeeeccceeeEEeCCCCC
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTD-HPIAHLYDVNTFQC-YLSANVPEISVNGAINQVRYSSTGG 78 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~vw~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~ 78 (228)
+||....+... .+..+...+ +++|+|+++++++++. ++.|.+||+.+++. ...... + ..+..+++|+|+++
T Consensus 24 ~~d~~~~~~~~--~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~---~-~~~~~~~~~s~dg~ 96 (331)
T 3u4y_A 24 FFSTDTLEILN--QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE---G-QSSMADVDITPDDQ 96 (331)
T ss_dssp EEETTTCCEEE--EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE---C-SSCCCCEEECTTSS
T ss_pred EEeCcccceee--eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc---C-CCCccceEECCCCC
Confidence 35655443322 223345566 9999999997766554 88999999998875 333222 1 44444499999999
Q ss_pred eEEEEecCC---eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEe-eCCCe-EEEEEccCCeeEEEEe--cce
Q 040370 79 MYVTASKDG---AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC-GKDST-VKLWEVSSGRLVKQYL--GAT 151 (228)
Q Consensus 79 ~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~-i~~wd~~~~~~~~~~~--~~~ 151 (228)
+++++..++ .|.+||+.+++.+..+... ....+++|+|++++++++ ..++. |.+|++.....+.... ...
T Consensus 97 ~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~ 173 (331)
T 3u4y_A 97 FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP---YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS 173 (331)
T ss_dssp EEEECCCSSSSCEEEEEETTTTEEEEEEECC---TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC
T ss_pred EEEEecCCCCcccEEEEECCCCCeEEEEECC---CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc
Confidence 998655553 8999999999888777653 345899999999866555 45578 9999987543322111 001
Q ss_pred eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcce---eEEeecCCCCCcEEEEeCCCCcEEEEec-CCCCEEEeeec
Q 040370 152 HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK---VAKWSSNHIGAPRWIEHSPAEAAFITCG-TDRSVRFWKEI 227 (228)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~ 227 (228)
.......+.++|+++++++++..++.|.+||+.+++. +..+. ....+..++|+|++++|+.++ .++.|.+||+.
T Consensus 174 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~ 251 (331)
T 3u4y_A 174 GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQL 251 (331)
T ss_dssp SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETT
T ss_pred CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECC
Confidence 2334678899999998888887789999999999887 66663 346778999999999766554 57889999863
No 138
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=5.9e-24 Score=156.20 Aligned_cols=197 Identities=10% Similarity=0.059 Sum_probs=152.9
Q ss_pred ceEEEEEeCCCCEE-EEecCCCeEEEEEcccceEEeeeccce-eeeccceeeEEeCCCCCeEEEEe------------cC
Q 040370 21 NVRSVSFHPSGDFL-LAGTDHPIAHLYDVNTFQCYLSANVPE-ISVNGAINQVRYSSTGGMYVTAS------------KD 86 (228)
Q Consensus 21 ~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~------------~d 86 (228)
.+..++|+|+++++ +++..++.|.+||+.+++......... ..+...+..++|+|+++++++++ .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 58899999999766 456668899999999988765554321 00123678899999999888886 57
Q ss_pred CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce---------------
Q 040370 87 GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT--------------- 151 (228)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--------------- 151 (228)
+.|.+||+.+++....+.. ...+.+++|+|++++++++ ++.|++||+.+++....+....
T Consensus 115 ~~i~v~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 189 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEA---PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVW 189 (337)
T ss_dssp CEEEEEETTTTEEEEEEEC---CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCC
T ss_pred ceEEEEECCCCcEEEEEeC---CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEe
Confidence 9999999998888777765 3456788999999988887 6889999998887665443211
Q ss_pred -------------------------------------------------eeeeeeEEEECCCCcEEEEeeCCCCeEEEEE
Q 040370 152 -------------------------------------------------HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWD 182 (228)
Q Consensus 152 -------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d 182 (228)
+......+.++|++++++++ ++.|.+||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~v~~~d 266 (337)
T 1pby_B 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFD 266 (337)
T ss_dssp CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---ESEEEEEE
T ss_pred eeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe---CCeEEEEE
Confidence 00122357899999998886 58999999
Q ss_pred cCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 183 ALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+.+++....+. ....+.+++|+|++++|++++.++.|.+||+.
T Consensus 267 ~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 267 LEKNASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp TTTTEEEEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred CCCCcCcceec--CCCceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence 99988877763 23467899999999999999999999999963
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=1.7e-23 Score=154.79 Aligned_cols=206 Identities=10% Similarity=0.074 Sum_probs=160.1
Q ss_pred ecCcceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeee-----ccceeeEEeCCCCCeEEEEe--cCCe
Q 040370 17 QDTHNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISV-----NGAINQVRYSSTGGMYVTAS--KDGA 88 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~--~dg~ 88 (228)
.....+..++|+|++++++ +...++.|.+||..+++............ ...+.+++|+|+++++++++ .++.
T Consensus 86 ~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 165 (353)
T 3vgz_A 86 HNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESV 165 (353)
T ss_dssp EESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCE
T ss_pred ecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCce
Confidence 3455688999999999655 55667999999999988766655432110 01268899999999877766 4789
Q ss_pred EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce--eeeeeeEEEECCCCc
Q 040370 89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT--HTQLRFQAVFNDTEE 166 (228)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 166 (228)
|.+||+.+++....+... ...+.+++|+|+++++++++.++.|.+||+.+++....+.... +......+.++|+++
T Consensus 166 i~~~d~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 243 (353)
T 3vgz_A 166 IWVVDGGNIKLKTAIQNT--GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ 243 (353)
T ss_dssp EEEEETTTTEEEEEECCC--CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT
T ss_pred EEEEcCCCCceEEEecCC--CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC
Confidence 999999999888877633 3457789999999999999999999999999998887765421 233466789999999
Q ss_pred EEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEE-EecCCCCEEEeeec
Q 040370 167 FVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFI-TCGTDRSVRFWKEI 227 (228)
Q Consensus 167 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~ 227 (228)
++++++..++.|.+||..+++....+..+. ...++|+|++++++ +...++.|.+||+.
T Consensus 244 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 244 RAFITDSKAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp EEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECC
Confidence 988888777999999999999887774332 25699999998555 44579999999963
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=1.1e-23 Score=154.72 Aligned_cols=217 Identities=10% Similarity=0.125 Sum_probs=151.3
Q ss_pred CcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCC---eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC
Q 040370 2 FDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHP---IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG 78 (228)
Q Consensus 2 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 78 (228)
||...... ....+..+..+..+++|+|++++++++..++ .|.+||+.+++....... .....+++|+|+|+
T Consensus 67 ~d~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----~~~~~~~~~spdg~ 140 (331)
T 3u4y_A 67 IETQLEPP-KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-----PYDAVGIAISPNGN 140 (331)
T ss_dssp EECSSSSC-EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-----CTTEEEEEECTTSS
T ss_pred EECCCCce-eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-----CCCccceEECCCCC
Confidence 45543332 1333334555555599999999999665553 899999999887665432 34568999999998
Q ss_pred eEEEE-ecCCe-EEEEeCCCCceeeEE--ecccccceeEEEEECCCCCEEEE-eeCCCeEEEEEccCCee---EEEEecc
Q 040370 79 MYVTA-SKDGA-IRLWDGVSANCVRSI--VGAHGTAEATSANFTKDQRFVLS-CGKDSTVKLWEVSSGRL---VKQYLGA 150 (228)
Q Consensus 79 ~l~~~-~~dg~-v~iwd~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~~wd~~~~~~---~~~~~~~ 150 (228)
+++++ ..++. +.+|++.....+... ...........++|+|++++++. +..++.|++||+.+++. +..+..
T Consensus 141 ~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~- 219 (331)
T 3u4y_A 141 GLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT- 219 (331)
T ss_dssp CEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-
T ss_pred EEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-
Confidence 66555 55578 999998764433111 10011345789999999996655 44688999999998887 665553
Q ss_pred eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcce--eEEeecC---CCC---CcEEEEeCCCCcEEEEe-cCCCCE
Q 040370 151 THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK--VAKWSSN---HIG---APRWIEHSPAEAAFITC-GTDRSV 221 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~---~~~---~v~~~~~~~~~~~l~s~-~~dg~i 221 (228)
......+.|+|++++++++...++.|.+||..+++. +..+... +.. ....++|+|++++|+++ ..++.|
T Consensus 220 --~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v 297 (331)
T 3u4y_A 220 --NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISREL 297 (331)
T ss_dssp --SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEE
T ss_pred --CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcE
Confidence 355678899999998888777678999999998876 3333211 122 23558999999987655 456799
Q ss_pred EEeeec
Q 040370 222 RFWKEI 227 (228)
Q Consensus 222 ~vwd~~ 227 (228)
.+||+.
T Consensus 298 ~v~d~~ 303 (331)
T 3u4y_A 298 KVFTIS 303 (331)
T ss_dssp EEEETT
T ss_pred EEEEec
Confidence 999963
No 141
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=4e-23 Score=152.74 Aligned_cols=209 Identities=11% Similarity=0.061 Sum_probs=145.3
Q ss_pred EEeecCcceEEEEEeCCCCEEEEecC---CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe-cCCeE
Q 040370 14 RVIQDTHNVRSVSFHPSGDFLLAGTD---HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS-KDGAI 89 (228)
Q Consensus 14 ~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v 89 (228)
....+...+..++|+|+++ |++++. ++.|.+|++.+++...... ...+ ...+..++|+|++++|++++ .++.+
T Consensus 34 ~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~-~~~~-~~~p~~~a~spdg~~l~~~~~~~~~v 110 (347)
T 3hfq_A 34 GLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNT-VVAP-GTPPAYVAVDEARQLVYSANYHKGTA 110 (347)
T ss_dssp EEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEE-EEEE-SCCCSEEEEETTTTEEEEEETTTTEE
T ss_pred eeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeee-eecC-CCCCEEEEECCCCCEEEEEeCCCCEE
Confidence 4455667888999999999 555443 6899999998776432221 1122 56789999999999888887 78999
Q ss_pred EEEeCCC-Cc--eeeEEeccc-------ccceeEEEEECCCCCEEEEeeCCCeEEEEEcc-CCeeEEE--Eecceeeeee
Q 040370 90 RLWDGVS-AN--CVRSIVGAH-------GTAEATSANFTKDQRFVLSCGKDSTVKLWEVS-SGRLVKQ--YLGATHTQLR 156 (228)
Q Consensus 90 ~iwd~~~-~~--~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~~~~~--~~~~~~~~~~ 156 (228)
.+|++.. +. .+..+.... ....+.+++|+|+++.+++...++.|++||+. +++.... +... .....
T Consensus 111 ~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~-~g~~p 189 (347)
T 3hfq_A 111 EVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTME-AGFGP 189 (347)
T ss_dssp EEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECC-TTCCE
T ss_pred EEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcC-CCCCC
Confidence 9999963 32 222222210 11247889999999966666678899999998 4543221 1111 12245
Q ss_pred eEEEECCCCcEEEEeeCCCCeEEEEEcCC--ccee--EEeecCCC------CCcEEEEeCCCCcEE-EEecCCCCEEEee
Q 040370 157 FQAVFNDTEEFVLSIDEPSNEIVIWDALT--AEKV--AKWSSNHI------GAPRWIEHSPAEAAF-ITCGTDRSVRFWK 225 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~~~--~~~~~~~~------~~v~~~~~~~~~~~l-~s~~~dg~i~vwd 225 (228)
..+.|+|+++++++++..++.+.+|++.. ++.. ... .... ..+..++|+|+|++| ++...++.|.+|+
T Consensus 190 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~ 268 (347)
T 3hfq_A 190 RHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIV-KTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA 268 (347)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE-ESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeee-eecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence 56899999998888877789999999874 4321 222 1111 458889999999977 5556789999999
Q ss_pred ec
Q 040370 226 EI 227 (228)
Q Consensus 226 ~~ 227 (228)
+.
T Consensus 269 ~~ 270 (347)
T 3hfq_A 269 VT 270 (347)
T ss_dssp EC
T ss_pred EC
Confidence 73
No 142
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=1.7e-22 Score=149.52 Aligned_cols=187 Identities=9% Similarity=0.098 Sum_probs=151.2
Q ss_pred eEEEEEeCCCCEEEEec--CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce
Q 040370 22 VRSVSFHPSGDFLLAGT--DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC 99 (228)
Q Consensus 22 v~~~~~~~~~~~l~~~~--~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 99 (228)
+.+++|+|+++++++++ .++.|.+||..+++........ ...+.+++|+|+++.+++++.++.|.+||+.+++.
T Consensus 143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~ 218 (353)
T 3vgz_A 143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT----GKMSTGLALDSEGKRLYTTNADGELITIDTADNKI 218 (353)
T ss_dssp EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCC----CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEE
T ss_pred CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCC----CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeE
Confidence 78999999999887765 5789999999998877665422 44578899999999999999999999999999988
Q ss_pred eeEEeccc--ccceeEEEEECCCCCEEEEeeC-CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370 100 VRSIVGAH--GTAEATSANFTKDQRFVLSCGK-DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN 176 (228)
Q Consensus 100 ~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 176 (228)
...+.... ....+..++|+|+++++++++. ++.|.+||+.+++.+..+.... ...+.++|+++++++++..++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~ 294 (353)
T 3vgz_A 219 LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAG 294 (353)
T ss_dssp EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTT
T ss_pred EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCC
Confidence 87776521 1445788999999997776665 4899999999998887776422 256889999998888887789
Q ss_pred eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCC
Q 040370 177 EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTD 218 (228)
Q Consensus 177 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 218 (228)
.|.+||..+++....+. ....+.+++|+|++++|+.+..+
T Consensus 295 ~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 295 KVSVIDAKSYKVVKTFD--TPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEEEETTTTEEEEEEE--CCSEEEEEEECTTSCEEEEEEEC
T ss_pred eEEEEECCCCeEEEEEe--cCCCCCeEEEcCCCCEEEEEEcc
Confidence 99999999998887763 23478999999999977666554
No 143
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=1.1e-24 Score=175.95 Aligned_cols=199 Identities=10% Similarity=0.044 Sum_probs=150.5
Q ss_pred ceEEEEEeCCCCEEEEecCCCeEEEEEcccc---eEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC
Q 040370 21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTF---QCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA 97 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 97 (228)
.|.+++|+|||++|++++. +.|++||+.++ +... +. .+ ...+..++|+|+|++|+.++ ++.|++||+.++
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~-l~---~~-~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g 182 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ-LT---HG-EGFATDAKLSPKGGFVSFIR-GRNLWVIDLASG 182 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCB-CC---CS-SSCEEEEEECTTSSEEEEEE-TTEEEEEETTTT
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEE-cc---cC-CcccccccCCCCCCEEEEEe-CCcEEEEecCCC
Confidence 4889999999999999886 89999999987 4322 21 12 56799999999999999887 469999999887
Q ss_pred ceeeEEeccccc--------------ceeEEEEECCCCCEEEEeeCCC--------------------------------
Q 040370 98 NCVRSIVGAHGT--------------AEATSANFTKDQRFVLSCGKDS-------------------------------- 131 (228)
Q Consensus 98 ~~~~~~~~~~~~--------------~~i~~~~~~~~~~~l~~~~~d~-------------------------------- 131 (228)
+.......+... ..+..+.|+|||++|++++.|+
T Consensus 183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 765443332100 0146799999999999988765
Q ss_pred -eEEEEEccC-CeeEEEEecceeeeeeeEEEECCCCcEEEEeeC----CCCeEEEEEcCCcceeEEeecCCCC---CcEE
Q 040370 132 -TVKLWEVSS-GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE----PSNEIVIWDALTAEKVAKWSSNHIG---APRW 202 (228)
Q Consensus 132 -~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~---~v~~ 202 (228)
.|++||+.+ ++.........+...+..+.| |+++.++++.. .+..|++||+.+++....+...... .+..
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~ 341 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNS 341 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSC
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCc
Confidence 789999988 765443322235667888999 99999887653 3578999999998876655322222 4568
Q ss_pred EEeCCCCcEEEEecCCCCEEEeeec
Q 040370 203 IEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 203 ~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
++|+|+|+++++++.||.++||.+.
T Consensus 342 ~~~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 342 LRFLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp CEECTTSCEEEEECTTSSCEEEEEC
T ss_pred eEECCCCeEEEEecCCCccEEEEEc
Confidence 9999999999999999988888753
No 144
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.93 E-value=1.7e-23 Score=154.55 Aligned_cols=196 Identities=10% Similarity=0.086 Sum_probs=146.1
Q ss_pred ceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeecccee--eeccceeeEEeCCCCCeEEEEecC-----------
Q 040370 21 NVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEI--SVNGAINQVRYSSTGGMYVTASKD----------- 86 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d----------- 86 (228)
.+..++|+|++++++ ++..++.|.+||+.+++.......... .....+..++|+|+|+++++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 678999999998665 556789999999999887655543210 002237899999999999998865
Q ss_pred -CeEEEEeCCCCcee---eEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce-----------
Q 040370 87 -GAIRLWDGVSANCV---RSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT----------- 151 (228)
Q Consensus 87 -g~v~iwd~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~----------- 151 (228)
+.|.+||+.+++.. ..+.. ...+.+++|+|+++ +++++. .|++||+.+++....+....
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFPM---PRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDV 197 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEEC---CSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBC
T ss_pred CCeEEEEECCCccccceeeeccC---CCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccc
Confidence 89999999885433 33332 33578899999999 555543 49999999888766554221
Q ss_pred --------------e-----------------------------------------eeeeeEEEECC-CCcEEEEeeCCC
Q 040370 152 --------------H-----------------------------------------TQLRFQAVFND-TEEFVLSIDEPS 175 (228)
Q Consensus 152 --------------~-----------------------------------------~~~~~~~~~~~-~~~~~~~~~~~d 175 (228)
. ......+.++| ++++++++ +
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~ 274 (349)
T 1jmx_B 198 LYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---L 274 (349)
T ss_dssp CCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---E
T ss_pred eeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---c
Confidence 0 00234556778 99988886 5
Q ss_pred CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 176 NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 176 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+.|.+||+.+++....+.. ...+.+++|+|++++|++++.++.|.+||+.
T Consensus 275 ~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 275 NRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp SEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred CeEEEEECccCeEEEEEcC--CCCccceEECCCCCEEEEecCCCeEEEEecc
Confidence 8999999999988777632 3457899999999989888889999999963
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=1.3e-23 Score=169.29 Aligned_cols=220 Identities=9% Similarity=0.063 Sum_probs=155.2
Q ss_pred CCcCCccccceeEEEeecCc---ceEEEEEeCCCCEEEEecCC---------CeEEEEEcccceEEeeeccceeeeccce
Q 040370 1 FFDFSKATAKRAFRVIQDTH---NVRSVSFHPSGDFLLAGTDH---------PIAHLYDVNTFQCYLSANVPEISVNGAI 68 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------~~i~vw~~~~~~~~~~~~~~~~~~~~~i 68 (228)
+||....... ..+..|.. .|.+++|+|||++|++++.+ +.+.+||+.+++.. .+.....+ ...+
T Consensus 41 ~~d~~~g~~~--~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~-~~~~ 116 (723)
T 1xfd_A 41 LWNVETNTST--VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLDPPEVS-NAKL 116 (723)
T ss_dssp EBCGGGCCCE--EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECCCTTCC-SCCC
T ss_pred EEECCCCcEE--EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE-eccCCccc-cccc
Confidence 4666644332 22223443 49999999999999998764 78899999988752 22222222 4458
Q ss_pred eeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccc----------------eeEEEEECCCCCEEEEeeCCC-
Q 040370 69 NQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTA----------------EATSANFTKDQRFVLSCGKDS- 131 (228)
Q Consensus 69 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~----------------~i~~~~~~~~~~~l~~~~~d~- 131 (228)
..++|+|+|+.|+.++. +.|++||+.+++..+....+.... .+.+++|+|||++|++++.|+
T Consensus 117 ~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~ 195 (723)
T 1xfd_A 117 QYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDS 195 (723)
T ss_dssp SBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECT
T ss_pred cccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCC
Confidence 89999999999999886 799999999887766554432111 237899999999999887553
Q ss_pred ---------------------------------eEEEEEccCCeeEEEEecce----eeeeeeEEEECCCCcEEEEeeC-
Q 040370 132 ---------------------------------TVKLWEVSSGRLVKQYLGAT----HTQLRFQAVFNDTEEFVLSIDE- 173 (228)
Q Consensus 132 ---------------------------------~i~~wd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~- 173 (228)
.|++||+.+++....+..+. +...+..+.|+|+++.+++...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~ 275 (723)
T 1xfd_A 196 RVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNR 275 (723)
T ss_dssp TSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEET
T ss_pred ccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcC
Confidence 79999998887545554321 2456788999999998866543
Q ss_pred --CCCeEEEEEcCCcceeEEeecCCCCCcE----EEEeCCCCcEEEE--ecCCC------CEEEee
Q 040370 174 --PSNEIVIWDALTAEKVAKWSSNHIGAPR----WIEHSPAEAAFIT--CGTDR------SVRFWK 225 (228)
Q Consensus 174 --~d~~i~i~d~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~l~s--~~~dg------~i~vwd 225 (228)
.+..|++||+.+++........+...+. .++|+|+|+.|+. +..++ .|.+||
T Consensus 276 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 276 AQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp TSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred CCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 2468999999998876655333444443 7899999997775 45667 456665
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=2.9e-23 Score=166.84 Aligned_cols=219 Identities=11% Similarity=0.103 Sum_probs=153.1
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEccc-----ceEEeeeccceeee----------c
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNT-----FQCYLSANVPEISV----------N 65 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~-----~~~~~~~~~~~~~~----------~ 65 (228)
+||+... +...+..+...+.+++|+|+|++|+.+ .++.|++|++.+ ++............ .
T Consensus 105 ~~d~~~~---~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~ 180 (706)
T 2z3z_A 105 GFDMLAR---KVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREF 180 (706)
T ss_dssp EEETTTT---EEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCT
T ss_pred EEECCCC---ceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhc
Confidence 3666533 344555677889999999999999985 579999999998 76544322211000 0
Q ss_pred cceeeEEeCCCCCeEEEEe---------------------------------cCCeEEEEeCCCCceeeEEeccccccee
Q 040370 66 GAINQVRYSSTGGMYVTAS---------------------------------KDGAIRLWDGVSANCVRSIVGAHGTAEA 112 (228)
Q Consensus 66 ~~i~~~~~~~~~~~l~~~~---------------------------------~dg~v~iwd~~~~~~~~~~~~~~~~~~i 112 (228)
..+.++.|+|+|++|++++ .+..|.+||+.+++.........+...+
T Consensus 181 ~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 260 (706)
T 2z3z_A 181 GIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFL 260 (706)
T ss_dssp TCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEE
T ss_pred CCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeE
Confidence 1258999999999999987 4467999999988765443322235678
Q ss_pred EEEEECCCCCEEEEeeCCC-----eEEEEEccCCeeEEEEecceeee---eeeEEEECC--CCcEEEEeeCCCCeEEEEE
Q 040370 113 TSANFTKDQRFVLSCGKDS-----TVKLWEVSSGRLVKQYLGATHTQ---LRFQAVFND--TEEFVLSIDEPSNEIVIWD 182 (228)
Q Consensus 113 ~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~d~~i~i~d 182 (228)
.+++|+||+++|++++.++ .|++||+.+++....+....... .+..+.|+| ++++++++ ..|+.+++|+
T Consensus 261 ~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~-~~~g~~~l~~ 339 (706)
T 2z3z_A 261 TNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQS-RRDGWNHLYL 339 (706)
T ss_dssp EEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEE-CTTSSCEEEE
T ss_pred eeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEE-ccCCccEEEE
Confidence 9999999999999988776 89999999884443333211221 235678999 99877665 4478899998
Q ss_pred cC-CcceeEEeecCCCCCcEE-EEeCCCCcEEEEecC-CC--CEEEee
Q 040370 183 AL-TAEKVAKWSSNHIGAPRW-IEHSPAEAAFITCGT-DR--SVRFWK 225 (228)
Q Consensus 183 ~~-~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~-dg--~i~vwd 225 (228)
+. ++.....+ ..+...+.. ++|+|+++.|+.++. ++ .+.||.
T Consensus 340 ~~~~~~~~~~l-~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 386 (706)
T 2z3z_A 340 YDTTGRLIRQV-TKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYC 386 (706)
T ss_dssp EETTSCEEEEC-CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEE
T ss_pred EECCCCEEEec-CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEE
Confidence 76 55656555 566777776 799999987765554 44 244544
No 147
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=1.6e-23 Score=168.40 Aligned_cols=199 Identities=9% Similarity=0.059 Sum_probs=148.8
Q ss_pred cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC---
Q 040370 20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS--- 96 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~--- 96 (228)
..|.+++|+|+ +.++.+. ++.|++||+.+++....... ...+.+++|+|+|+.|+++ .|+.|++||+.+
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~ 153 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLFDT-----NEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGE 153 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEECC-----TTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTS
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEccCC-----cccccCCcCCCCCCEEEEE-ECCeEEEEecCcccc
Confidence 56999999999 6666554 59999999998875443221 5678899999999999885 689999999988
Q ss_pred --CceeeEEecccccc-------------eeEEEEECCCCCEEEEee---------------------------------
Q 040370 97 --ANCVRSIVGAHGTA-------------EATSANFTKDQRFVLSCG--------------------------------- 128 (228)
Q Consensus 97 --~~~~~~~~~~~~~~-------------~i~~~~~~~~~~~l~~~~--------------------------------- 128 (228)
++......... .. .+.++.|+|||++|++++
T Consensus 154 ~~g~~~~~~~~~~-~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~ 232 (706)
T 2z3z_A 154 GMSRAIAVTIDGT-ETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPS 232 (706)
T ss_dssp CCCCCEESCSCCB-TTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCC
T ss_pred cCCCcEEeccCCC-CCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCC
Confidence 76554333321 11 147899999999999987
Q ss_pred CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC----CeEEEEEcCCcceeEEee-cCCCC---Cc
Q 040370 129 KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS----NEIVIWDALTAEKVAKWS-SNHIG---AP 200 (228)
Q Consensus 129 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~i~i~d~~~~~~~~~~~-~~~~~---~v 200 (228)
.+..|++||+.+++.........+...+..+.|+|+++.++++.... ..|++||..+++....+. ..+.. .+
T Consensus 233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~ 312 (706)
T 2z3z_A 233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL 312 (706)
T ss_dssp CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence 44679999999887655443323456778999999999888865521 389999999884433332 12222 34
Q ss_pred EEEEeCC--CCcEEEEecCCCCEEEeeec
Q 040370 201 RWIEHSP--AEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 201 ~~~~~~~--~~~~l~s~~~dg~i~vwd~~ 227 (228)
..++|+| +++++++++.||.+++|++.
T Consensus 313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp SCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred CCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 6789999 99999999999999999763
No 148
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=1.6e-22 Score=163.32 Aligned_cols=221 Identities=9% Similarity=0.041 Sum_probs=155.2
Q ss_pred CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeee------------ccce
Q 040370 1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISV------------NGAI 68 (228)
Q Consensus 1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~------------~~~i 68 (228)
+||+..........+..|...+.+++|+|||++|+.++. +.|++||+.+++............ ...+
T Consensus 133 ~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~ 211 (741)
T 2ecf_A 133 LYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRH 211 (741)
T ss_dssp EEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCC
T ss_pred EEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccc
Confidence 356654411133345567888999999999999998874 689999999887654332211000 0125
Q ss_pred eeEEeCCCCCeEEEEecCC---------------------------------eEEEEeCCC-CceeeEEecccccceeEE
Q 040370 69 NQVRYSSTGGMYVTASKDG---------------------------------AIRLWDGVS-ANCVRSIVGAHGTAEATS 114 (228)
Q Consensus 69 ~~~~~~~~~~~l~~~~~dg---------------------------------~v~iwd~~~-~~~~~~~~~~~~~~~i~~ 114 (228)
..++|+|+|++|++++.|+ .|.+||+.+ ++.........+...+..
T Consensus 212 ~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 291 (741)
T 2ecf_A 212 TGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLAR 291 (741)
T ss_dssp CSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEE
T ss_pred cceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEE
Confidence 7899999999999988766 899999988 775544332123678899
Q ss_pred EEECCCCCEEEEeeC-----CCeEEEEEccCCeeEEEEecceeee---eeeEEEECCCCcEEEEeeCCCCeEEEEEcC-C
Q 040370 115 ANFTKDQRFVLSCGK-----DSTVKLWEVSSGRLVKQYLGATHTQ---LRFQAVFNDTEEFVLSIDEPSNEIVIWDAL-T 185 (228)
Q Consensus 115 ~~~~~~~~~l~~~~~-----d~~i~~wd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~ 185 (228)
++| ||+++|++++. +..|++||+.+++....+..+. .. .+..+.|+|+++++++ +..|+.+++|.+. +
T Consensus 292 ~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-~~~~~~~~~~~~spdg~~~~~-~~~~g~~~l~~~~~~ 368 (741)
T 2ecf_A 292 VNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS-PTWVPLHNSLRFLDDGSILWS-SERTGFQHLYRIDSK 368 (741)
T ss_dssp EEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC-SSCCCCCSCCEECTTSCEEEE-ECTTSSCEEEEECSS
T ss_pred EEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC-CCcCCcCCceEECCCCeEEEE-ecCCCccEEEEEcCC
Confidence 999 99999987654 5679999999988766654321 11 3357889999996555 4557877787765 3
Q ss_pred cceeEEeecCCCCCcEEE-EeCCCCcEEE-EecCCC--CEEEeeec
Q 040370 186 AEKVAKWSSNHIGAPRWI-EHSPAEAAFI-TCGTDR--SVRFWKEI 227 (228)
Q Consensus 186 ~~~~~~~~~~~~~~v~~~-~~~~~~~~l~-s~~~dg--~i~vwd~~ 227 (228)
++ ...+ ..|...+..+ .|+|+++.|+ +++.++ .+++|++.
T Consensus 369 ~~-~~~l-~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 369 GK-AAAL-THGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp SC-EEES-CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred CC-eeee-eecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 44 4444 5677778887 5999998775 455555 89999864
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=1.2e-22 Score=146.39 Aligned_cols=191 Identities=10% Similarity=0.110 Sum_probs=139.3
Q ss_pred CcceEEEEEeCCCCEEEEec--CCCeEEEEEc--ccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCCeEEEEe
Q 040370 19 THNVRSVSFHPSGDFLLAGT--DHPIAHLYDV--NTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDGAIRLWD 93 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~--~d~~i~vw~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd 93 (228)
...+.+++|+|++++|++++ .++...||.+ .+++.. .+.. ...+..++|+|+++.++ +++.++.+++|+
T Consensus 84 ~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~~~-----~~~~~~~~~spdg~~l~~~~~~~~~~~l~~ 157 (297)
T 2ojh_A 84 TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPR-LMTK-----NLPSYWHGWSPDGKSFTYCGIRDQVFDIYS 157 (297)
T ss_dssp CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCE-ECCS-----SSSEEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceE-Eeec-----CCCccceEECCCCCEEEEEECCCCceEEEE
Confidence 36789999999999999988 3344555554 444422 1111 33488899999999877 788899999998
Q ss_pred CCC-CceeeEEecccccceeEEEEECCCCCEEEEee-CCCeEEEEEcc-CCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370 94 GVS-ANCVRSIVGAHGTAEATSANFTKDQRFVLSCG-KDSTVKLWEVS-SGRLVKQYLGATHTQLRFQAVFNDTEEFVLS 170 (228)
Q Consensus 94 ~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
++. +.....+..+ ...+.+++|+|++++++.++ .++.+++|++. .+.....+.. +...+..+.|+|+++++++
T Consensus 158 ~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~ 233 (297)
T 2ojh_A 158 MDIDSGVETRLTHG--EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD--SAYGDWFPHPSPSGDKVVF 233 (297)
T ss_dssp EETTTCCEEECCCS--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC--CSEEEEEEEECTTSSEEEE
T ss_pred EECCCCcceEcccC--CCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec--CCcccCCeEECCCCCEEEE
Confidence 643 2233333333 56789999999999887666 58899999987 4455555544 4556778999999999888
Q ss_pred eeCC----------CCeEEEEEcCCcceeEEe-ecCCCCCcEEEEeCCCCcEEEEecCCC
Q 040370 171 IDEP----------SNEIVIWDALTAEKVAKW-SSNHIGAPRWIEHSPAEAAFITCGTDR 219 (228)
Q Consensus 171 ~~~~----------d~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg 219 (228)
++.. ++.|++||+.+++..... ..+|...+..++|+|++++|++++.|.
T Consensus 234 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 234 VSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 7652 257999999887654332 136788899999999999998887654
No 150
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=4.4e-23 Score=166.11 Aligned_cols=207 Identities=9% Similarity=0.051 Sum_probs=143.6
Q ss_pred cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceee-----ec---------cceeeEEeCCCCCeEEEE
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEIS-----VN---------GAINQVRYSSTGGMYVTA 83 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-----~~---------~~i~~~~~~~~~~~l~~~ 83 (228)
|...+..++|+|||++||.++. +.|++|++.+++........... +. +.+.+++|+|+|+.|+++
T Consensus 112 ~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~ 190 (723)
T 1xfd_A 112 SNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA 190 (723)
T ss_dssp CSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred ccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEE
Confidence 4445889999999999999886 79999999987755433221100 00 123789999999999988
Q ss_pred ecCC----------------------------------eEEEEeCCCCceeeEEeccc----ccceeEEEEECCCCCEEE
Q 040370 84 SKDG----------------------------------AIRLWDGVSANCVRSIVGAH----GTAEATSANFTKDQRFVL 125 (228)
Q Consensus 84 ~~dg----------------------------------~v~iwd~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~ 125 (228)
+.|+ .|++||+.+++....+..+. +...+..++|+|||++++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~ 270 (723)
T 1xfd_A 191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAV 270 (723)
T ss_dssp EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEE
T ss_pred EECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEE
Confidence 7653 79999999887655554321 145789999999999887
Q ss_pred EeeC----CCeEEEEEccCCeeEEEEecceeeeee----eEEEECCCCcEEEEe-eCCCC------eEEEEEc-CCcce-
Q 040370 126 SCGK----DSTVKLWEVSSGRLVKQYLGATHTQLR----FQAVFNDTEEFVLSI-DEPSN------EIVIWDA-LTAEK- 188 (228)
Q Consensus 126 ~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~d~------~i~i~d~-~~~~~- 188 (228)
+... +..|++||+.+++....+... +...+ ..+.|+|+++.++.. +..++ .|.+||. ..++.
T Consensus 271 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 349 (723)
T 1xfd_A 271 TWLNRAQNVSILTLCDATTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND 349 (723)
T ss_dssp EEEETTSCEEEEEEEETTTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC
T ss_pred EEEcCCCCeEEEEEEeCCCCcceEEEEec-cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc
Confidence 7653 357999999988766555331 11222 367899999987765 55566 5777773 34431
Q ss_pred -eEEeecCCCCCcEE-EEeCCCCcEEEEecCC---CCEEEeeec
Q 040370 189 -VAKWSSNHIGAPRW-IEHSPAEAAFITCGTD---RSVRFWKEI 227 (228)
Q Consensus 189 -~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~d---g~i~vwd~~ 227 (228)
...+ ..+...+.. ++|+|+++.|+..+.+ +.+++|++.
T Consensus 350 ~~~~l-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 350 NIQSI-TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp CCCBS-CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred ceeEe-ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 4444 223334444 6999999998766554 789999874
No 151
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=1.5e-20 Score=139.72 Aligned_cols=205 Identities=11% Similarity=0.102 Sum_probs=140.1
Q ss_pred ecCcceEEEEEeCCCCEEEEec-CCCeEEEEEcccceEEeeeccceee----------eccceeeEEeCCCCCeEEEEe-
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGT-DHPIAHLYDVNTFQCYLSANVPEIS----------VNGAINQVRYSSTGGMYVTAS- 84 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~- 84 (228)
.+......+++ ++++|++++ .++.|.+|++..............+ ....+.+++|+|+|+++++++
T Consensus 97 ~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 174 (361)
T 3scy_A 97 TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDL 174 (361)
T ss_dssp CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEET
T ss_pred cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeC
Confidence 35566777888 788777665 6889999999754322211110000 022357899999999666554
Q ss_pred cCCeEEEEeCCCCce------e------eEEecccccceeEEEEECCCCCEEEEee-CCCeEEEEEccCCeeE--EEEec
Q 040370 85 KDGAIRLWDGVSANC------V------RSIVGAHGTAEATSANFTKDQRFVLSCG-KDSTVKLWEVSSGRLV--KQYLG 149 (228)
Q Consensus 85 ~dg~v~iwd~~~~~~------~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~--~~~~~ 149 (228)
.++.|.+|++..... + ....... ......++|+|+++++++++ .++.|.+||+.+++.. ..+..
T Consensus 175 ~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~ 253 (361)
T 3scy_A 175 GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP-GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAA 253 (361)
T ss_dssp TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT-TCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEES
T ss_pred CCCEEEEEEEcCCCCcccccceeecccccceecCC-CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEec
Confidence 588999998875432 1 1222222 44578899999999887777 6899999999877542 22221
Q ss_pred -ceeeeeeeEEEECCCCcEEEEeeCC-CCeEEEEEcC--Ccc--eeEEeecCCCCCcEEEEeCCCCcEEEEec-CCCCEE
Q 040370 150 -ATHTQLRFQAVFNDTEEFVLSIDEP-SNEIVIWDAL--TAE--KVAKWSSNHIGAPRWIEHSPAEAAFITCG-TDRSVR 222 (228)
Q Consensus 150 -~~~~~~~~~~~~~~~~~~~~~~~~~-d~~i~i~d~~--~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~ 222 (228)
..+......+.|+|++++++++... ++.|.+|++. +++ .+..+ .. ...+..++|+|++++|++++ .++.|.
T Consensus 254 ~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~-~~-g~~~~~~~~spdg~~l~~~~~~~~~v~ 331 (361)
T 3scy_A 254 DTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ-LT-GIHPRNFIITPNGKYLLVACRDTNVIQ 331 (361)
T ss_dssp CSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE-EC-SSCCCEEEECTTSCEEEEEETTTTEEE
T ss_pred CCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe-cC-CCCCceEEECCCCCEEEEEECCCCCEE
Confidence 1122334688999999999888776 6899999985 344 33333 22 45788999999999888877 678999
Q ss_pred Eeee
Q 040370 223 FWKE 226 (228)
Q Consensus 223 vwd~ 226 (228)
+|++
T Consensus 332 v~~~ 335 (361)
T 3scy_A 332 IFER 335 (361)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9765
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=8.1e-21 Score=141.15 Aligned_cols=204 Identities=11% Similarity=0.128 Sum_probs=139.7
Q ss_pred cCcceEEEEEeCCCCEEEEecCC----CeEEEEEccc--ceEEeeeccceeeeccceeeEEeCCCCCeEEEEe-cCCeEE
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDH----PIAHLYDVNT--FQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS-KDGAIR 90 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d----~~i~vw~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~ 90 (228)
+...+..++|+|++++|++++.+ +.|.+|++.. ++........ .+ ......+++ +++++++++ .++.|.
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~-~~-~~~p~~~~~--dg~~l~~~~~~~~~v~ 123 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQK-TM-GADPCYLTT--NGKNIVTANYSGGSIT 123 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEE-CS-SSCEEEEEE--CSSEEEEEETTTTEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEec-cC-CCCcEEEEE--CCCEEEEEECCCCEEE
Confidence 67788889999999999988875 7999999876 4432221111 11 345667777 777777665 688999
Q ss_pred EEeCCCCceeeEE---eccc---------ccceeEEEEECCCCCEEEEee-CCCeEEEEEccCCee------E------E
Q 040370 91 LWDGVSANCVRSI---VGAH---------GTAEATSANFTKDQRFVLSCG-KDSTVKLWEVSSGRL------V------K 145 (228)
Q Consensus 91 iwd~~~~~~~~~~---~~~~---------~~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~------~------~ 145 (228)
+|++.....+..+ ..+. ....+.+++|+|+++++++++ .++.|++|++..... + .
T Consensus 124 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~ 203 (361)
T 3scy_A 124 VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE 203 (361)
T ss_dssp EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence 9999754322111 1111 122357899999999766555 578999999875431 1 1
Q ss_pred EEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCccee--EEee--cCCCCCcEEEEeCCCCcEEEEecC--CC
Q 040370 146 QYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKV--AKWS--SNHIGAPRWIEHSPAEAAFITCGT--DR 219 (228)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~--~~~~--~~~~~~v~~~~~~~~~~~l~s~~~--dg 219 (228)
.... ........+.|+|+++++++++..++.|.+||+.+++.. .... ..+...+..++|+|+|++|+++.. ++
T Consensus 204 ~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~ 282 (361)
T 3scy_A 204 AFKV-APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD 282 (361)
T ss_dssp EEEC-CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred ceec-CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence 1111 123345678999999999888877899999999876542 2221 233455789999999998876665 48
Q ss_pred CEEEeee
Q 040370 220 SVRFWKE 226 (228)
Q Consensus 220 ~i~vwd~ 226 (228)
.|.+|++
T Consensus 283 ~i~v~~~ 289 (361)
T 3scy_A 283 GVAIFKV 289 (361)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8999997
No 153
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.90 E-value=5.6e-21 Score=142.31 Aligned_cols=204 Identities=9% Similarity=0.050 Sum_probs=142.9
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcc-cceEEeeeccceeeeccceeeEEeCCCCCe--EEEEe-----------
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVN-TFQCYLSANVPEISVNGAINQVRYSSTGGM--YVTAS----------- 84 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~~~----------- 84 (228)
...+..++|+|++++|++++.+ .|.+|++. +++........ . .+.+.+++|+|+|++ +++++
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~-~--~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP-I--GGHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE-C--CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee-c--CCCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 3478899999999999988887 99999997 77654322211 0 133567899999994 45553
Q ss_pred --cCCeEEEEeCC-CCceeeEEec--ccccceeEEEEECCCCCEEEEeeC-CCeEEEEEcc-CCeeEE--EEecceeeee
Q 040370 85 --KDGAIRLWDGV-SANCVRSIVG--AHGTAEATSANFTKDQRFVLSCGK-DSTVKLWEVS-SGRLVK--QYLGATHTQL 155 (228)
Q Consensus 85 --~dg~v~iwd~~-~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~wd~~-~~~~~~--~~~~~~~~~~ 155 (228)
.+|.+.+|++. .++....+.. +.....+.+++|+|+|++++++.. ++.|++||+. +++... .+....+...
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~ 194 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDH 194 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCC
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCC
Confidence 68999999997 4555443332 112457889999999998887664 6799999998 665432 2221112345
Q ss_pred eeEEEECCCCcEEEEeeCCCCeEEEEEcC--CcceeE---Eee--c----CCCC------CcEEEE-eCCCCcEEEEecC
Q 040370 156 RFQAVFNDTEEFVLSIDEPSNEIVIWDAL--TAEKVA---KWS--S----NHIG------APRWIE-HSPAEAAFITCGT 217 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--~~~~~~---~~~--~----~~~~------~v~~~~-~~~~~~~l~s~~~ 217 (228)
...+.|+|+++++++++..++.|.+|++. +++... .+. . +|.. .+..++ |+|+|++|++++.
T Consensus 195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 67889999999998888767999999865 454321 121 1 1122 478999 9999998887664
Q ss_pred CC------CEEEeee
Q 040370 218 DR------SVRFWKE 226 (228)
Q Consensus 218 dg------~i~vwd~ 226 (228)
+. .|.+|++
T Consensus 275 ~~~~~~~~~i~v~~~ 289 (365)
T 1jof_A 275 ANKFELQGYIAGFKL 289 (365)
T ss_dssp ESSTTSCCEEEEEEE
T ss_pred CCCCCCCCeEEEEEE
Confidence 32 7999987
No 154
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.90 E-value=2.3e-21 Score=144.36 Aligned_cols=206 Identities=9% Similarity=0.058 Sum_probs=140.8
Q ss_pred ceEEEEEeCCCCE--EEEec-------------CCCeEEEEEcc-cceEEeeeccceeeeccceeeEEeCCCCCeEEEEe
Q 040370 21 NVRSVSFHPSGDF--LLAGT-------------DHPIAHLYDVN-TFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS 84 (228)
Q Consensus 21 ~v~~~~~~~~~~~--l~~~~-------------~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 84 (228)
.+.+++|+|++++ ++++. .++.+.+|++. +++...........+...+.+++|+|+|+++++++
T Consensus 84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 163 (365)
T 1jof_A 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD 163 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence 3566899999994 45553 68999999997 45543322211001145789999999999888765
Q ss_pred c-CCeEEEEeCC-CCceee--EEecccccceeEEEEECCCCCEEEEeeC-CCeEEEEEcc--CCeeEE---EEecce---
Q 040370 85 K-DGAIRLWDGV-SANCVR--SIVGAHGTAEATSANFTKDQRFVLSCGK-DSTVKLWEVS--SGRLVK---QYLGAT--- 151 (228)
Q Consensus 85 ~-dg~v~iwd~~-~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~wd~~--~~~~~~---~~~~~~--- 151 (228)
. ++.|++||+. +++... .+....+...+..++|+|+++++++++. ++.|.+|++. +++... .+....
T Consensus 164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 243 (365)
T 1jof_A 164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI 243 (365)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence 4 6899999998 666432 2321111446889999999999887765 6899999875 454421 222110
Q ss_pred --eee------eeeEEE-ECCCCcEEEEeeCCCC-----eEEEEEcC-CcceeEE--eecCCCCCcEEEEeCC---CCcE
Q 040370 152 --HTQ------LRFQAV-FNDTEEFVLSIDEPSN-----EIVIWDAL-TAEKVAK--WSSNHIGAPRWIEHSP---AEAA 211 (228)
Q Consensus 152 --~~~------~~~~~~-~~~~~~~~~~~~~~d~-----~i~i~d~~-~~~~~~~--~~~~~~~~v~~~~~~~---~~~~ 211 (228)
+.. ....+. ++|++++++++...++ .|.+|++. +++.... ....+...+..++|+| ++++
T Consensus 244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~ 323 (365)
T 1jof_A 244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW 323 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTE
T ss_pred CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCE
Confidence 111 467888 9999999887664333 89999986 5554331 1223455677899999 8999
Q ss_pred EEEecCC-CCEEEeee
Q 040370 212 FITCGTD-RSVRFWKE 226 (228)
Q Consensus 212 l~s~~~d-g~i~vwd~ 226 (228)
|++++.+ +.|.+|++
T Consensus 324 l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 324 MAITDDQEGWLEIYRW 339 (365)
T ss_dssp EEEECSSSCEEEEEEE
T ss_pred EEEEEcCCCeEEEEEE
Confidence 9998864 89999986
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=1.1e-21 Score=144.85 Aligned_cols=162 Identities=11% Similarity=0.049 Sum_probs=120.9
Q ss_pred EEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCCeEEEEeCCCCceeeE
Q 040370 24 SVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDGAIRLWDGVSANCVRS 102 (228)
Q Consensus 24 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~ 102 (228)
.+++++++.++++++.++.|.+||+.+++......... ...+..++|+|+++.++ ++..++.|.+||+.+++....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~ 80 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD---KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH 80 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS---CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC---CCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence 45678888999999999999999999988766554321 12578899999998654 556789999999999988777
Q ss_pred Eecccc----cceeEEEEECCCCCEEEEeeCC------------CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCc
Q 040370 103 IVGAHG----TAEATSANFTKDQRFVLSCGKD------------STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEE 166 (228)
Q Consensus 103 ~~~~~~----~~~i~~~~~~~~~~~l~~~~~d------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (228)
+...+. ...+..++|+|+++++++++.+ +.|.+||+.+++.............+..+.++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 160 (349)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc
Confidence 764321 2336789999999999998865 899999998854332221111233567788999999
Q ss_pred EEEEeeCCCCeEEEEEcCCcceeEEe
Q 040370 167 FVLSIDEPSNEIVIWDALTAEKVAKW 192 (228)
Q Consensus 167 ~~~~~~~~d~~i~i~d~~~~~~~~~~ 192 (228)
+++++ +.|.+||..+++....+
T Consensus 161 -l~~~~---~~i~~~d~~~~~~~~~~ 182 (349)
T 1jmx_B 161 -LYVAG---PDIYKMDVKTGKYTVAL 182 (349)
T ss_dssp -EEEES---SSEEEECTTTCCEEEEE
T ss_pred -EEEcc---CcEEEEeCCCCceeccc
Confidence 55543 44999999988876655
No 156
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=8.3e-22 Score=164.45 Aligned_cols=195 Identities=8% Similarity=0.024 Sum_probs=158.2
Q ss_pred cCcceEEEEEe-CCCCEEEEecCCCeEEEEEcccceEEeeeccceeeecc-ceeeEEeCCCCCeEEEEecCCeEE-EEeC
Q 040370 18 DTHNVRSVSFH-PSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG-AINQVRYSSTGGMYVTASKDGAIR-LWDG 94 (228)
Q Consensus 18 ~~~~v~~~~~~-~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~v~-iwd~ 94 (228)
|...+.+++|+ |+|++|++++ ++.|.+|++..++.... . .+ .. .+..++|+ +|+.+++++.++.+. +||+
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~-~---~~-~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~ 366 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV-P---EP-LRIRYVRRGGD-TKVAFIHGTREGDFLGIYDY 366 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC-S---CC-SCEEEEEECSS-SEEEEEEEETTEEEEEEEET
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEc-c---CC-CcceEEeeeEc-CCCeEEEEECCCceEEEEEC
Confidence 45579999999 9999999888 78999999988765432 1 12 44 78999999 999999999888898 9998
Q ss_pred CCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC
Q 040370 95 VSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP 174 (228)
Q Consensus 95 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
.+++.. .+..+ ...+..++|+|++++|++++.++.|++||+.+++....... +...+..+.|+|++++++.++..
T Consensus 367 ~~~~~~-~l~~~--~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~--~~~~v~~~~~SpDG~~la~~~~~ 441 (1045)
T 1k32_A 367 RTGKAE-KFEEN--LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS--REAMITDFTISDNSRFIAYGFPL 441 (1045)
T ss_dssp TTCCEE-ECCCC--CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--SSSCCCCEEECTTSCEEEEEEEE
T ss_pred CCCCce-EecCC--ccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC--CCCCccceEECCCCCeEEEEecC
Confidence 876543 33332 57889999999999999999999999999999887766644 55567889999999999887653
Q ss_pred ---------CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 175 ---------SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 175 ---------d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
++.|++||+.+++ ...+ ..|...+..++|+|+|++|+.++.++...+|+.
T Consensus 442 ~~~~~~~~~~~~i~l~d~~~g~-~~~l-~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 442 KHGETDGYVMQAIHVYDMEGRK-IFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp CSSTTCSCCEEEEEEEETTTTE-EEEC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred ccccccCCCCCeEEEEECCCCc-EEEe-eCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence 2599999998877 4444 577888899999999999999998888777763
No 157
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=5e-21 Score=159.82 Aligned_cols=201 Identities=10% Similarity=0.002 Sum_probs=150.9
Q ss_pred EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC------
Q 040370 14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG------ 87 (228)
Q Consensus 14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------ 87 (228)
.+.+|...+..++|+|+|++|++++.++.|++||+.+++....... + ...+.+++|+|+|++|++++.++
T Consensus 373 ~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~---~-~~~v~~~~~SpDG~~la~~~~~~~~~~~~ 448 (1045)
T 1k32_A 373 KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS---R-EAMITDFTISDNSRFIAYGFPLKHGETDG 448 (1045)
T ss_dssp ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---S-SSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC---C-CCCccceEECCCCCeEEEEecCccccccC
Confidence 3346778999999999999999999999999999999876554422 2 67789999999999998887654
Q ss_pred ----eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee-------EEE----------
Q 040370 88 ----AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL-------VKQ---------- 146 (228)
Q Consensus 88 ----~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-------~~~---------- 146 (228)
.|++||+.+++ ...+..+ ...+..++|+|+|++|+.++.++...+|+...... +..
T Consensus 449 ~~~~~i~l~d~~~g~-~~~l~~~--~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (1045)
T 1k32_A 449 YVMQAIHVYDMEGRK-IFAATTE--NSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNP 525 (1045)
T ss_dssp CCEEEEEEEETTTTE-EEECSCS--SSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCG
T ss_pred CCCCeEEEEECCCCc-EEEeeCC--CcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCc
Confidence 89999998877 4445443 55678899999999999999888777776543221 000
Q ss_pred ------------------------EecceeeeeeeEEEECCCCcEEEE------------eeCCCCeEEEEEcCCcceeE
Q 040370 147 ------------------------YLGATHTQLRFQAVFNDTEEFVLS------------IDEPSNEIVIWDALTAEKVA 190 (228)
Q Consensus 147 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~d~~i~i~d~~~~~~~~ 190 (228)
.....+...+..+.++|++..+++ .......+.+||+.+++...
T Consensus 526 ~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~ 605 (1045)
T 1k32_A 526 TKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE 605 (1045)
T ss_dssp GGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE
T ss_pred cccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEE
Confidence 000112344667889999987775 12234688999998877533
Q ss_pred EeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 191 KWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 191 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.. ..+..++|+|||++|++++.| .|++||+.
T Consensus 606 l~-----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~ 636 (1045)
T 1k32_A 606 VK-----NNLTDLRLSADRKTVMVRKDD-GKIYTFPL 636 (1045)
T ss_dssp EE-----EEEEEEEECTTSCEEEEEETT-SCEEEEES
T ss_pred ee-----cCcceEEECCCCCEEEEEcCC-cEEEEeCc
Confidence 22 568899999999999998866 79999973
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=3.9e-22 Score=160.59 Aligned_cols=197 Identities=11% Similarity=0.076 Sum_probs=139.2
Q ss_pred ceEEEEEeCCCCEEEEecC---------CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370 21 NVRSVSFHPSGDFLLAGTD---------HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL 91 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~~~---------d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 91 (228)
.+.+++|||||++|+.++. ++.|++||+.+++....... ...+..++|||+|+.|+.+. ++.|++
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-----~~~~~~~~~SPDG~~la~~~-~~~i~~ 134 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-----PRPIQYLCWSPVGSKLAYVY-QNNIYL 134 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-----CSSBCCEEECSSTTCEEEEE-TTEEEE
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-----CcccccceECCCCCEEEEEE-CCeEEE
Confidence 3899999999999998876 78999999999876321221 34688999999999999885 789999
Q ss_pred EeCCCCceeeEEeccccccee-----------------EEEEECCCCCEEEEeeCCC-----------------------
Q 040370 92 WDGVSANCVRSIVGAHGTAEA-----------------TSANFTKDQRFVLSCGKDS----------------------- 131 (228)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~i-----------------~~~~~~~~~~~l~~~~~d~----------------------- 131 (228)
||+.+++..+.....+ ...+ .+++|+|||++|++++.|.
T Consensus 135 ~~~~~g~~~~l~~~~~-~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 213 (719)
T 1z68_A 135 KQRPGDPPFQITFNGR-ENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP 213 (719)
T ss_dssp ESSTTSCCEECCCCCB-TTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred EeCCCCCcEEEecCCC-cCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence 9998887654322211 1112 4799999999999987652
Q ss_pred -----------eEEEEEccCCeeE--EEEec----ceeeeeeeEEEECCCCcEEEEeeCC-C--CeEEEEE----cCCcc
Q 040370 132 -----------TVKLWEVSSGRLV--KQYLG----ATHTQLRFQAVFNDTEEFVLSIDEP-S--NEIVIWD----ALTAE 187 (228)
Q Consensus 132 -----------~i~~wd~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-d--~~i~i~d----~~~~~ 187 (228)
.|++||+.+++.. ..+.. ..+...+..+.|+|+++.+++.... + ..|.+|| ..+++
T Consensus 214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~ 293 (719)
T 1z68_A 214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD 293 (719)
T ss_dssp CCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred CCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc
Confidence 7889999887642 11110 1255667889999998766653321 1 3588899 77776
Q ss_pred eeEEee---cCCCCCcE-----EEEeCCCCcEEE--EecCCCCEEEe
Q 040370 188 KVAKWS---SNHIGAPR-----WIEHSPAEAAFI--TCGTDRSVRFW 224 (228)
Q Consensus 188 ~~~~~~---~~~~~~v~-----~~~~~~~~~~l~--s~~~dg~i~vw 224 (228)
...... ..|...+. .+.|+|+|+.|+ ++..+|...||
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~ 340 (719)
T 1z68_A 294 CPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIH 340 (719)
T ss_dssp CCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEE
T ss_pred eEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEE
Confidence 554432 35666666 789999998554 45566655444
No 159
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=1.9e-20 Score=137.43 Aligned_cols=152 Identities=12% Similarity=0.116 Sum_probs=117.6
Q ss_pred CEEEEecCCCeEEEEEcccceEEeeeccceeeecc-ceeeEEeCCCCCeE-EEEecCCeEEEEeCCCCceeeEEeccc--
Q 040370 32 DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG-AINQVRYSSTGGMY-VTASKDGAIRLWDGVSANCVRSIVGAH-- 107 (228)
Q Consensus 32 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~-- 107 (228)
+++++++.++.|.+||+.+++......... .. .+..++|+|+++.+ +++..++.|.+||+.+++....+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIAD---AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTT---CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCC---CCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc
Confidence 478899999999999999988766554321 11 47899999999765 556668899999999998887776432
Q ss_pred -ccceeEEEEECCCCCEEEEee------------CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC
Q 040370 108 -GTAEATSANFTKDQRFVLSCG------------KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP 174 (228)
Q Consensus 108 -~~~~i~~~~~~~~~~~l~~~~------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
+...+..++|+|++++++++. .++.|.+||+.+++....+.. ...+..+.++|++++++++
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~--- 152 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA---PRQITMLAWARDGSKLYGL--- 152 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC---CSSCCCEEECTTSSCEEEE---
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC---CCCcceeEECCCCCEEEEe---
Confidence 122567899999999988886 579999999999887776653 2345678899999988886
Q ss_pred CCeEEEEEcCCcceeEEe
Q 040370 175 SNEIVIWDALTAEKVAKW 192 (228)
Q Consensus 175 d~~i~i~d~~~~~~~~~~ 192 (228)
++.|.+||+.+++....+
T Consensus 153 ~~~i~~~d~~~~~~~~~~ 170 (337)
T 1pby_B 153 GRDLHVMDPEAGTLVEDK 170 (337)
T ss_dssp SSSEEEEETTTTEEEEEE
T ss_pred CCeEEEEECCCCcEeeee
Confidence 478999999887765444
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=7e-21 Score=149.94 Aligned_cols=191 Identities=10% Similarity=-0.004 Sum_probs=137.6
Q ss_pred CcceEEEEEeCCCCEEEEecC-CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec---CCeEEEEeC
Q 040370 19 THNVRSVSFHPSGDFLLAGTD-HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK---DGAIRLWDG 94 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~v~iwd~ 94 (228)
..+|.+++|+|||++||.++. ||+++||+++.++...... ++...+..+.|+|+ +.+++++. +....+|.+
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~----~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNR----EPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCS----SCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeec----ccccccccccCCCC-eEEEEeccCCCCcceEEEEE
Confidence 568999999999999998876 9999999997776543322 21357899999999 77777765 455666654
Q ss_pred CC--CceeeEEecccccceeEEEEECCCCC--EEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370 95 VS--ANCVRSIVGAHGTAEATSANFTKDQR--FVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS 170 (228)
Q Consensus 95 ~~--~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
.. ......+... ......+|+|+++ .+++++.+ .+.+||+.+++....... .. ..+.|+|+|++++.
T Consensus 96 ~~~~~g~~~~l~~~---~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~---~~--~~~~~spDG~~la~ 166 (582)
T 3o4h_A 96 NTSRPGEEQRLEAV---KPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARL---PG--FGFVSDIRGDLIAG 166 (582)
T ss_dssp ETTSTTCCEECTTS---CSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEE---SS--CEEEEEEETTEEEE
T ss_pred eccCCCccccccCC---CCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecC---CC--ceEEECCCCCEEEE
Confidence 43 2222233322 1233557777775 44444444 455999998876554432 22 78889999999997
Q ss_pred eeCCC----CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCC--CEEEeee
Q 040370 171 IDEPS----NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDR--SVRFWKE 226 (228)
Q Consensus 171 ~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~i~vwd~ 226 (228)
++. + +.|++||+.+++.. .+ ..|.+.+..++|+|||+.|+++..++ .|++||+
T Consensus 167 ~~~-~~~~~~~i~~~d~~~g~~~-~l-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~ 225 (582)
T 3o4h_A 167 LGF-FGGGRVSLFTSNLSSGGLR-VF-DSGEGSFSSASISPGMKVTAGLETAREARLVTVDP 225 (582)
T ss_dssp EEE-EETTEEEEEEEETTTCCCE-EE-CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECT
T ss_pred EEE-cCCCCeEEEEEcCCCCCce-Ee-ecCCCccccceECCCCCEEEEccCCCeeEEEEEcC
Confidence 654 3 67999999888765 34 57888899999999999999888888 7888885
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=7.1e-22 Score=159.09 Aligned_cols=195 Identities=10% Similarity=0.065 Sum_probs=139.4
Q ss_pred EEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec---------CCeEEEEeC
Q 040370 24 SVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK---------DGAIRLWDG 94 (228)
Q Consensus 24 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~v~iwd~ 94 (228)
+++|+|++++++++ .|+.|++||+.+++........... ...+.+++|||||++|++++. ++.|++||+
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMK-SVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHH-TTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEcccccc-ccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 78999999655554 6899999999998865544321100 114899999999999998876 789999999
Q ss_pred CCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeee-----------------eee
Q 040370 95 VSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQ-----------------LRF 157 (228)
Q Consensus 95 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-----------------~~~ 157 (228)
.+++....... ...+..++|+|||+.|+.+. ++.|++||+.+++........ +.. ...
T Consensus 98 ~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~-~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 98 SNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNG-RENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp TTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCC-BTTTEEESSCCHHHHHHTTCSSC
T ss_pred CCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCC-CcCCeEcccccceeeeecccCcc
Confidence 98876211111 23578899999999999885 789999999887765432111 111 114
Q ss_pred EEEECCCCcEEEEeeCCCC---------------------------------eEEEEEcCCccee--EEe-----ecCCC
Q 040370 158 QAVFNDTEEFVLSIDEPSN---------------------------------EIVIWDALTAEKV--AKW-----SSNHI 197 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~~~d~---------------------------------~i~i~d~~~~~~~--~~~-----~~~~~ 197 (228)
.+.|+|+|++++.+..+++ .|++||+.+++.. ..+ ..+|.
T Consensus 173 ~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 252 (719)
T 1z68_A 173 ALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD 252 (719)
T ss_dssp CEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred cEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence 7999999999988764221 7889999887752 111 13577
Q ss_pred CCcEEEEeCCCCcEEEEecC--C--CCEEEee
Q 040370 198 GAPRWIEHSPAEAAFITCGT--D--RSVRFWK 225 (228)
Q Consensus 198 ~~v~~~~~~~~~~~l~s~~~--d--g~i~vwd 225 (228)
..+..++|+||++++++... + ..|.+||
T Consensus 253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d 284 (719)
T 1z68_A 253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICD 284 (719)
T ss_dssp EEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred ceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence 88999999999887777442 2 2377777
No 162
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=2.7e-21 Score=152.28 Aligned_cols=197 Identities=10% Similarity=0.017 Sum_probs=141.3
Q ss_pred eEEEeecC-cceEEEEEeCCCCEEEEecC---CCeEEEEEccc---ceEEeeeccceeeeccceeeEEeCCCCCe-EEEE
Q 040370 12 AFRVIQDT-HNVRSVSFHPSGDFLLAGTD---HPIAHLYDVNT---FQCYLSANVPEISVNGAINQVRYSSTGGM-YVTA 83 (228)
Q Consensus 12 ~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---d~~i~vw~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~ 83 (228)
..++..|. ..+..++|+|+ +.+++++. +....+|.+.. +... .... ...+...+|+|+++. +++.
T Consensus 56 ~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~-----~~~~~~~~~s~dg~~~~~~s 128 (582)
T 3o4h_A 56 TVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA-----VKPMRILSGVDTGEAVVFTG 128 (582)
T ss_dssp EEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT-----SCSBEEEEEEECSSCEEEEE
T ss_pred cEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccC-----CCCceeeeeCCCCCeEEEEe
Confidence 34445555 58999999999 77776664 45556665543 2222 2222 122345678887753 3333
Q ss_pred ecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC----CeEEEEEccCCeeEEEEecceeeeeeeEE
Q 040370 84 SKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD----STVKLWEVSSGRLVKQYLGATHTQLRFQA 159 (228)
Q Consensus 84 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
+.++.+.+||+.+++.......+ . .+++|+|||+++++++.+ +.|++||+.+++.. .+.. +...+..+
T Consensus 129 ~~~~~~~l~d~~~g~~~~l~~~~---~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~--~~~~~~~~ 200 (582)
T 3o4h_A 129 ATEDRVALYALDGGGLRELARLP---G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDS--GEGSFSSA 200 (582)
T ss_dssp ECSSCEEEEEEETTEEEEEEEES---S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECC--SSCEEEEE
T ss_pred cCCCCceEEEccCCcEEEeecCC---C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eeec--CCCccccc
Confidence 44445559999888765544332 2 788999999999988877 78999999887754 4433 45567899
Q ss_pred EECCCCcEEEEeeCCCC--eEEEEEcCCcceeEEeecCCCCCcEEEE--------eCCCCcEEEEecCCCCEEEeee
Q 040370 160 VFNDTEEFVLSIDEPSN--EIVIWDALTAEKVAKWSSNHIGAPRWIE--------HSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 160 ~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
.|+|+|+.++++ ..++ .|++||+.+++.. .+ ..|...+..++ |+|||.++++++.||.+++|++
T Consensus 201 ~~SpDG~~l~~~-~~~~~~~i~~~d~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 201 SISPGMKVTAGL-ETAREARLVTVDPRDGSVE-DL-ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EECTTSCEEEEE-ECSSCEEEEEECTTTCCEE-EC-CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred eECCCCCEEEEc-cCCCeeEEEEEcCCCCcEE-Ec-cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 999999999954 4467 8999999988877 44 67777777777 9999999999999999999974
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.85 E-value=3.8e-19 Score=133.22 Aligned_cols=207 Identities=10% Similarity=-0.046 Sum_probs=143.9
Q ss_pred ceeEEEeecCcceEE-----EEEeCCCCEEEEecC-CC--eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE
Q 040370 10 KRAFRVIQDTHNVRS-----VSFHPSGDFLLAGTD-HP--IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV 81 (228)
Q Consensus 10 ~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~-d~--~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 81 (228)
.+..++..|...... .+|+|||++|+.++. ++ .|.+||+.+++........ ...+..+.|+|+++.|+
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~----~~~~~~~~~spdg~~l~ 96 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGR----GDNTFGGFLSPDDDALF 96 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSS----CBCSSSCEECTTSSEEE
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCC----CCCccceEEcCCCCEEE
Confidence 344555556656665 889999999998876 66 4888899888765544322 34445678999999999
Q ss_pred EEecCCeEEEEeCCCCceeeEEecccccceeEE--EEECCCCCEEEEe----------------------eCCCeEEEEE
Q 040370 82 TASKDGAIRLWDGVSANCVRSIVGAHGTAEATS--ANFTKDQRFVLSC----------------------GKDSTVKLWE 137 (228)
Q Consensus 82 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~l~~~----------------------~~d~~i~~wd 137 (228)
.++.++.|++||+.+++.......+ ...+.. ..++|++.+++.. ..+..|++||
T Consensus 97 ~~~~~~~l~~~d~~~g~~~~~~~~~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 174 (388)
T 3pe7_A 97 YVKDGRNLMRVDLATLEENVVYQVP--AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVD 174 (388)
T ss_dssp EEETTTEEEEEETTTCCEEEEEECC--TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEE
T ss_pred EEeCCCeEEEEECCCCcceeeeech--hhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEE
Confidence 9999999999999998876666554 233332 3458999988742 2446899999
Q ss_pred ccCCeeEEEEecceeeeeeeEEEECC-CCcEEEEeeCC-----CCeEEEEEcCCcceeEEeecCCC-CCcEEEEeCCCCc
Q 040370 138 VSSGRLVKQYLGATHTQLRFQAVFND-TEEFVLSIDEP-----SNEIVIWDALTAEKVAKWSSNHI-GAPRWIEHSPAEA 210 (228)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~ 210 (228)
+.+++...... +...+..+.|+| +++.++..... ...|.++|...++.. .+...+. ..+....|+|+|+
T Consensus 175 ~~~g~~~~l~~---~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~ 250 (388)
T 3pe7_A 175 LKTGESTVILQ---ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGS 250 (388)
T ss_dssp TTTCCEEEEEE---ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSS
T ss_pred CCCCceEEeec---CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCC
Confidence 99886544332 344567889999 99888766542 247888887655443 3322222 3577889999999
Q ss_pred EEEEecC-CC----CEEEeee
Q 040370 211 AFITCGT-DR----SVRFWKE 226 (228)
Q Consensus 211 ~l~s~~~-dg----~i~vwd~ 226 (228)
.|+..+. ++ .|.+||+
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~ 271 (388)
T 3pe7_A 251 ALVYVSYLKGSPDRFIYSADP 271 (388)
T ss_dssp CEEEEEEETTCCCEEEEEECT
T ss_pred EEEEEecCCCCCcceEEEEec
Confidence 7765443 22 3888885
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.85 E-value=4.5e-18 Score=122.39 Aligned_cols=200 Identities=13% Similarity=0.156 Sum_probs=143.5
Q ss_pred CcceEEEEEe-CCCCEEEEecC-CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370 19 THNVRSVSFH-PSGDFLLAGTD-HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS 96 (228)
Q Consensus 19 ~~~v~~~~~~-~~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 96 (228)
...+..+++. +++.++++... ++.|.+|+ .+++....+.... ...+..++++|+++++++...++.|.+||..
T Consensus 76 ~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 150 (286)
T 1q7f_A 76 LLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATI---LQHPRGVTVDNKGRIIVVECKVMRVIIFDQN- 150 (286)
T ss_dssp BSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTT---CSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred ccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCcc---CCCceEEEEeCCCCEEEEECCCCEEEEEcCC-
Confidence 3578899995 67766666543 78999999 4555544443211 3467899999999988888888999999964
Q ss_pred CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370 97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN 176 (228)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 176 (228)
++....+........+..++++++++.+++...++.|++||. +++.+..+...........+++++++..+++... ++
T Consensus 151 g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~-~~ 228 (286)
T 1q7f_A 151 GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNH-NN 228 (286)
T ss_dssp SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECS-SS
T ss_pred CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCC-CC
Confidence 555555543222346789999999998888888999999997 4555655543222245678899999976666544 45
Q ss_pred -eEEEEEcCCcceeEEeecC-CCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 177 -EIVIWDALTAEKVAKWSSN-HIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 177 -~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.|.+||. +++.+..+... ....+.+++++|+++++++ +.|++|++|+..
T Consensus 229 ~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~ 279 (286)
T 1q7f_A 229 FNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV 279 (286)
T ss_dssp CEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred EEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence 9999995 56666555322 2234779999999987777 569999999863
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.85 E-value=5.6e-20 Score=148.55 Aligned_cols=200 Identities=5% Similarity=-0.040 Sum_probs=141.3
Q ss_pred cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceee-eccceeeEEeCCCCCeEEEEecC---------CeE
Q 040370 20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEIS-VNGAINQVRYSSTGGMYVTASKD---------GAI 89 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d---------g~v 89 (228)
....+++|+|++++++++ |+.|++||+.+++....+...... .......+.|||||++|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 346689999999988886 899999999998876554432211 01123458999999999998876 567
Q ss_pred EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceee----------------
Q 040370 90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHT---------------- 153 (228)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~---------------- 153 (228)
.+||+.+++... +..+ ...+...+|+|||+.|+.+ .++.|++||+.+++..+.... .+.
T Consensus 95 ~~~d~~~~~~~~-l~~~--~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~-g~~~~~~~g~~~~v~~ee~ 169 (740)
T 4a5s_A 95 DIYDLNKRQLIT-EERI--PNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWT-GKEDIIYNGITDWVYEEEV 169 (740)
T ss_dssp EEEETTTTEECC-SSCC--CTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSC-CBTTTEEESBCCHHHHHHT
T ss_pred EEEECCCCcEEE-cccC--CCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCC-CCccceecCcccccccchh
Confidence 799999887553 3332 5578999999999999888 478999999988765432211 111
Q ss_pred -eeeeEEEECCCCcEEEEeeCCCC-----------------------------------eEEEEEcCC---cc--eeEEe
Q 040370 154 -QLRFQAVFNDTEEFVLSIDEPSN-----------------------------------EIVIWDALT---AE--KVAKW 192 (228)
Q Consensus 154 -~~~~~~~~~~~~~~~~~~~~~d~-----------------------------------~i~i~d~~~---~~--~~~~~ 192 (228)
.....+.|+|+|+.++....++. .|++||+.+ ++ ....+
T Consensus 170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l 249 (740)
T 4a5s_A 170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI 249 (740)
T ss_dssp SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence 11134789999999887642211 688899988 63 22233
Q ss_pred ec-----CCCCCcEEEEeCCCCcEEEEec----CCCCEEEeee
Q 040370 193 SS-----NHIGAPRWIEHSPAEAAFITCG----TDRSVRFWKE 226 (228)
Q Consensus 193 ~~-----~~~~~v~~~~~~~~~~~l~s~~----~dg~i~vwd~ 226 (228)
.. +|...+..++|+|||+.++... .+..|.+||+
T Consensus 250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~ 292 (740)
T 4a5s_A 250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDY 292 (740)
T ss_dssp CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEE
T ss_pred cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEEC
Confidence 22 3777899999999999666543 3346889985
No 166
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.85 E-value=7e-18 Score=123.86 Aligned_cols=206 Identities=11% Similarity=0.111 Sum_probs=152.1
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccce-EEeeeccce-----eeeccceeeEEeCC-CCCeEEEEe-cCCeEE
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ-CYLSANVPE-----ISVNGAINQVRYSS-TGGMYVTAS-KDGAIR 90 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~-----~~~~~~i~~~~~~~-~~~~l~~~~-~dg~v~ 90 (228)
-.....++++|+++++++...++.|++|+.+... .+..+.... ..+......++++| +++++++.+ .++.|+
T Consensus 90 ~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~ 169 (329)
T 3fvz_A 90 FYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169 (329)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred cCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence 3478899999999988888889999999986542 222221100 00133578999999 788888876 689999
Q ss_pred EEeCCCCceeeEEeccc--------ccceeEEEEECCC-CCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEE
Q 040370 91 LWDGVSANCVRSIVGAH--------GTAEATSANFTKD-QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVF 161 (228)
Q Consensus 91 iwd~~~~~~~~~~~~~~--------~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 161 (228)
+|| .+++.+..+.... .-.....++++|+ +.++++...++.|++||..+++.+..+...........+.+
T Consensus 170 ~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 248 (329)
T 3fvz_A 170 QFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISY 248 (329)
T ss_dssp EEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEE
T ss_pred EEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeee
Confidence 999 5677666664321 1123789999998 77777878889999999988888888754444455667888
Q ss_pred CCCCcEEEEe------eCCCCeEEEEEcCCcceeEEee--cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 162 NDTEEFVLSI------DEPSNEIVIWDALTAEKVAKWS--SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 162 ~~~~~~~~~~------~~~d~~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
+| +..+... ...+..|++||..+++.+..+. ..+...+..++++|+|.++++...+++|++|++
T Consensus 249 ~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 249 IP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp ET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred cC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence 88 3322222 2224589999999999888763 356677999999999999999999999999986
No 167
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=2.7e-19 Score=144.58 Aligned_cols=197 Identities=12% Similarity=0.062 Sum_probs=133.8
Q ss_pred EEEEEeCCCCEEEEecCC---------CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEe
Q 040370 23 RSVSFHPSGDFLLAGTDH---------PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD 93 (228)
Q Consensus 23 ~~~~~~~~~~~l~~~~~d---------~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd 93 (228)
..++|||||++|+.++.+ +.+.+||+.+++.... . .+ ...+...+|||||+.|+.+. |+.|++||
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l-~---~~-~~~~~~~~~SPdG~~la~~~-~~~i~~~~ 138 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE-E---RI-PNNTQWVTWSPVGHKLAYVW-NNDIYVKI 138 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-S---CC-CTTEEEEEECSSTTCEEEEE-TTEEEEES
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEc-c---cC-CCcceeeEECCCCCEEEEEE-CCeEEEEE
Confidence 448899999999988875 5677999999885432 1 12 56789999999999998884 68999999
Q ss_pred CCCCceeeEEeccccccee-----------------EEEEECCCCCEEEEeeCCC-------------------------
Q 040370 94 GVSANCVRSIVGAHGTAEA-----------------TSANFTKDQRFVLSCGKDS------------------------- 131 (228)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~i-----------------~~~~~~~~~~~l~~~~~d~------------------------- 131 (228)
+.+++..+.....+ ...+ ..+.|+|||++|+.++.|.
T Consensus 139 ~~~~~~~~lt~~g~-~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~ 217 (740)
T 4a5s_A 139 EPNLPSYRITWTGK-EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVP 217 (740)
T ss_dssp STTSCCEECCSCCB-TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEE
T ss_pred CCCCceEEEcCCCC-ccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeec
Confidence 98877543222111 1111 3588999999999875321
Q ss_pred -----------eEEEEEccC---Ce--eEEEEecc----eeeeeeeEEEECCCCcEEEEeeC---CCCeEEEEEcCCcc-
Q 040370 132 -----------TVKLWEVSS---GR--LVKQYLGA----THTQLRFQAVFNDTEEFVLSIDE---PSNEIVIWDALTAE- 187 (228)
Q Consensus 132 -----------~i~~wd~~~---~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~i~d~~~~~- 187 (228)
.|++||+.+ ++ ....+... .+...+..+.|+|+++.++.... .+..|.+||+.+++
T Consensus 218 yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~ 297 (740)
T 4a5s_A 218 YPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSG 297 (740)
T ss_dssp CCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTT
T ss_pred CCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcc
Confidence 588899887 63 22233211 14567788999999996655432 23479999999887
Q ss_pred ---e---eEEeecCCCCCcE-----EEEeCCCCcEEE-Eec-CCCC--EEEeee
Q 040370 188 ---K---VAKWSSNHIGAPR-----WIEHSPAEAAFI-TCG-TDRS--VRFWKE 226 (228)
Q Consensus 188 ---~---~~~~~~~~~~~v~-----~~~~~~~~~~l~-s~~-~dg~--i~vwd~ 226 (228)
+ .......|...+. ...|+|||+.|+ ..+ .+|. |.+||+
T Consensus 298 ~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~ 351 (740)
T 4a5s_A 298 RWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQI 351 (740)
T ss_dssp EEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEET
T ss_pred ccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEEC
Confidence 1 1111134555544 788999999776 554 4554 555553
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.82 E-value=3.1e-17 Score=117.99 Aligned_cols=202 Identities=13% Similarity=0.200 Sum_probs=146.0
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccce--eeeccceeeEEe-CCCCCeEEEEec-CCeEEEEeC
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE--ISVNGAINQVRY-SSTGGMYVTASK-DGAIRLWDG 94 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~--~~~~~~i~~~~~-~~~~~~l~~~~~-dg~v~iwd~ 94 (228)
-..+.+++++|+++++++...++.|.+||.+ ++....+.... ..+...+..+++ .++++++++... ++.|.+||
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d- 106 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN- 106 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-
Confidence 3578999999999988888889999999987 44443332210 011346789999 567776666643 88999999
Q ss_pred CCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC
Q 040370 95 VSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP 174 (228)
Q Consensus 95 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
.+++.+..+.... ...+..++++|+++.+++...++.|.+||.. ++.+..+...........+++++++..+++ ...
T Consensus 107 ~~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~-~~~ 183 (286)
T 1q7f_A 107 QYGQFVRKFGATI-LQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFIS-DNR 183 (286)
T ss_dssp TTSCEEEEECTTT-CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEE-EGG
T ss_pred CCCcEEEEecCcc-CCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEE-ECC
Confidence 5677666664432 3567899999999988887788999999964 555555542223345678899999885555 444
Q ss_pred CCeEEEEEcCCcceeEEeec-CCCCCcEEEEeCCCCcEEEEecCCC-CEEEeee
Q 040370 175 SNEIVIWDALTAEKVAKWSS-NHIGAPRWIEHSPAEAAFITCGTDR-SVRFWKE 226 (228)
Q Consensus 175 d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg-~i~vwd~ 226 (228)
++.|++||. +++.+..+.. ++...+..++++|+++++++...++ .|.+||.
T Consensus 184 ~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 184 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ 236 (286)
T ss_dssp GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence 699999997 4555555521 2346789999999999888888776 9999984
No 169
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.82 E-value=1.1e-16 Score=117.54 Aligned_cols=205 Identities=9% Similarity=0.064 Sum_probs=145.7
Q ss_pred EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC----CeE
Q 040370 14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD----GAI 89 (228)
Q Consensus 14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~v 89 (228)
.+..+...+.+++|+|++++++++..++.|.+||.++++....... + ...+.+++++|+++++++...+ +.|
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~---~-~~~~~~i~~~~dg~l~v~~~~~~~~~~~i 114 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS---H-KANPAAIKIHKDGRLFVCYLGDFKSTGGI 114 (333)
T ss_dssp EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC---S-SSSEEEEEECTTSCEEEEECTTSSSCCEE
T ss_pred EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC---C-CCCcceEEECCCCcEEEEeCCCCCCCceE
Confidence 3445667789999999999888888899999999988765443211 1 5678999999999988877666 689
Q ss_pred EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC------CCeEEEEEccCCeeEEEEecceeeeeeeEEEECC
Q 040370 90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK------DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFND 163 (228)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (228)
.+||.+++.....+........+..++++|+++.+++... .+.|..+|..+++...... .......+.++|
T Consensus 115 ~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~i~~~~ 191 (333)
T 2dg1_A 115 FAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ---NISVANGIALST 191 (333)
T ss_dssp EEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE---EESSEEEEEECT
T ss_pred EEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec---CCCcccceEECC
Confidence 9999887765533332222457889999999987776653 3556677765544332221 223456788999
Q ss_pred CCcEEEEeeCCCCeEEEEEcCC-cceeEEe----e---cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 164 TEEFVLSIDEPSNEIVIWDALT-AEKVAKW----S---SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 164 ~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~----~---~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
+++.++++...++.|.+||..+ +.....+ . .++ ..+..++++++++++++...++.|.+||.
T Consensus 192 dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 192 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence 9987776665568999999864 3322111 0 122 46788999999998888877889999975
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.82 E-value=9.6e-19 Score=139.72 Aligned_cols=207 Identities=13% Similarity=0.065 Sum_probs=137.7
Q ss_pred EEEeecCcceE---------EEEEe--CCCCE-EEEecC-CCeEEEEEcc--c-ceEEeeeccceeeeccceeeEEeCCC
Q 040370 13 FRVIQDTHNVR---------SVSFH--PSGDF-LLAGTD-HPIAHLYDVN--T-FQCYLSANVPEISVNGAINQVRYSST 76 (228)
Q Consensus 13 ~~~~~~~~~v~---------~~~~~--~~~~~-l~~~~~-d~~i~vw~~~--~-~~~~~~~~~~~~~~~~~i~~~~~~~~ 76 (228)
.++..|...+. ...|+ ||++. |+.++. +..|.++++. . ++...........+...+..++|+|+
T Consensus 61 ~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spD 140 (662)
T 3azo_A 61 ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPE 140 (662)
T ss_dssp EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETT
T ss_pred ceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCC
Confidence 34445555655 66666 99998 776553 5667777765 2 43222111100001456789999999
Q ss_pred CCeEEEEecC----------CeEEEEeCCC------CceeeEEe-cccccceeEEEEECCCCCEEEEeeCC--------C
Q 040370 77 GGMYVTASKD----------GAIRLWDGVS------ANCVRSIV-GAHGTAEATSANFTKDQRFVLSCGKD--------S 131 (228)
Q Consensus 77 ~~~l~~~~~d----------g~v~iwd~~~------~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d--------~ 131 (228)
|+.|++++.+ ..|++||+.+ ++. ..+. .+ ...+..++|+|||++|+.++.+ .
T Consensus 141 g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~--~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~ 217 (662)
T 3azo_A 141 RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDA--HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGT 217 (662)
T ss_dssp TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSC--SSEECCCEECTTSSEEEEEEECTTCCTTTCE
T ss_pred CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecC--CCcccCceECCCCCEEEEEECCCCCCCCCCc
Confidence 9999988877 5899999987 443 3443 32 4567789999999999987755 3
Q ss_pred eEEEEEcc-CCe--eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC--eEEEEEcCCcceeEEeecCCCCC-------
Q 040370 132 TVKLWEVS-SGR--LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN--EIVIWDALTAEKVAKWSSNHIGA------- 199 (228)
Q Consensus 132 ~i~~wd~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~------- 199 (228)
.|++||+. +++ ....+.. .+...+..+.|+|+++.+++ +..++ .|.+||..+++..... ..+...
T Consensus 218 ~i~~~d~~~~g~~~~~~~l~~-~~~~~~~~~~~spdg~l~~~-~~~~~~~~l~~~~~~~~~~~~l~-~~~~~~~~p~w~~ 294 (662)
T 3azo_A 218 ELKTARVTEDGRFADTRTLLG-GPEEAIAQAEWAPDGSLIVA-TDRTGWWNLHRVDPATGAATQLC-RREEEFAGPLWTP 294 (662)
T ss_dssp EEEEEEECTTSCEEEEEEEEE-ETTBCEEEEEECTTSCEEEE-ECTTSSCEEEEECTTTCCEEESS-CCSSBSSCCCCST
T ss_pred EEEEEEECCCCcccccEEeCC-CCCceEcceEECCCCeEEEE-ECCCCCeEEEEEECCCCceeecc-cccccccCccccc
Confidence 79999998 561 2333322 12456778899999995544 45567 6777777666544332 222221
Q ss_pred -cEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 200 -PRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 200 -v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
+..++|+|+++++++++. +.++||.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 295 GMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp TCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred cCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 467889999999999998 99999954
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.82 E-value=3e-17 Score=121.93 Aligned_cols=196 Identities=13% Similarity=0.091 Sum_probs=129.6
Q ss_pred EEEEeCCCCEEEEec----------CCCeEEEEEcccceEEeeeccceee--eccceeeEEeCCCCCeEEEEec--CCeE
Q 040370 24 SVSFHPSGDFLLAGT----------DHPIAHLYDVNTFQCYLSANVPEIS--VNGAINQVRYSSTGGMYVTASK--DGAI 89 (228)
Q Consensus 24 ~~~~~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~--dg~v 89 (228)
.++|+|++++++++. .++.|.+||..+++..........+ +......++++|+|++|+++.. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 899999999999876 3678999999988877665532111 1245678999999999998874 5899
Q ss_pred EEEeCCCCceeeE-EecccccceeEEEEECCCC-CEEEEeeCCCeEEEEE------------------------------
Q 040370 90 RLWDGVSANCVRS-IVGAHGTAEATSANFTKDQ-RFVLSCGKDSTVKLWE------------------------------ 137 (228)
Q Consensus 90 ~iwd~~~~~~~~~-~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~wd------------------------------ 137 (228)
.+||+.+++.+.. +.... ...+.+.|++ ..+++.+.||.+.+|+
T Consensus 134 ~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPAL 209 (361)
T ss_dssp EEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEE
T ss_pred EEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecc
Confidence 9999999887766 43211 1112233332 3334444444444444
Q ss_pred ------------------ccCCee--EEEEecce--------eeeeeeEEEECCCCcEEEEeeC----------CCCeEE
Q 040370 138 ------------------VSSGRL--VKQYLGAT--------HTQLRFQAVFNDTEEFVLSIDE----------PSNEIV 179 (228)
Q Consensus 138 ------------------~~~~~~--~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~----------~d~~i~ 179 (228)
+..... ...+.... .......+.++|++..++++.. ..+.|.
T Consensus 210 ~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~ 289 (361)
T 2oiz_A 210 DKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIW 289 (361)
T ss_dssp CSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEE
T ss_pred cCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEE
Confidence 432211 01110000 0011112678898888777643 135899
Q ss_pred EEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 180 IWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 180 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+||..+++.+..+. .+. +.+++|+|+|++|++++. +.|.+||+.
T Consensus 290 viD~~t~~~v~~i~-~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 290 VMDTKTKQRVARIP-GRD--ALSMTIDQQRNLMLTLDG-GNVNVYDIS 333 (361)
T ss_dssp EEETTTTEEEEEEE-CTT--CCEEEEETTTTEEEEECS-SCEEEEECS
T ss_pred EEECCCCcEEEEEe-cCC--eeEEEECCCCCEEEEeCC-CeEEEEECC
Confidence 99999999998884 444 899999999999998887 999999963
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.81 E-value=4e-17 Score=119.82 Aligned_cols=203 Identities=13% Similarity=0.053 Sum_probs=147.6
Q ss_pred CcceEEEEEeCCCCEEEEecCC------------------------CeEEEEEcccceEEeeeccceeeeccceeeEEeC
Q 040370 19 THNVRSVSFHPSGDFLLAGTDH------------------------PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYS 74 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d------------------------~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 74 (228)
-..+.+++++|+|+++++...+ +.|.+||..+++........ + -.....++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~--~-~~~p~gia~d 99 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN--L-FYLPHGLSID 99 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT--T-CSSEEEEEEC
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC--c-cCCceEEEEC
Confidence 3679999999999999888777 47999999888865443321 1 3467899999
Q ss_pred CCCCeEEEEecCCeEEEEeCCCCc-eeeEEec-------ccccceeEEEEECC-CCCEEEEee-CCCeEEEEEccCCeeE
Q 040370 75 STGGMYVTASKDGAIRLWDGVSAN-CVRSIVG-------AHGTAEATSANFTK-DQRFVLSCG-KDSTVKLWEVSSGRLV 144 (228)
Q Consensus 75 ~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~-------~~~~~~i~~~~~~~-~~~~l~~~~-~d~~i~~wd~~~~~~~ 144 (228)
|+|+++++...++.|++||..... .+..+.. ...-.....++++| ++..+++.+ .++.|++|| .+++.+
T Consensus 100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~ 178 (329)
T 3fvz_A 100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFV 178 (329)
T ss_dssp TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEE
T ss_pred CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEE
Confidence 999988888889999999976442 4444421 11133578999999 788777776 689999999 567766
Q ss_pred EEEecc--------eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee-cCCCCCcEEEEeCCCCcEEEEe
Q 040370 145 KQYLGA--------THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS-SNHIGAPRWIEHSPAEAAFITC 215 (228)
Q Consensus 145 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~ 215 (228)
..+... ........++++|++..++++...++.|++||..+++.+..+. ..+...+..++++| +..+++.
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~ 257 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVN 257 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEE
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeC
Confidence 665321 1223367889999866666667768999999998888877763 24556788999999 4433333
Q ss_pred -------cCCCCEEEeee
Q 040370 216 -------GTDRSVRFWKE 226 (228)
Q Consensus 216 -------~~dg~i~vwd~ 226 (228)
..+..|++||+
T Consensus 258 g~~~v~~~~~~~v~~~~~ 275 (329)
T 3fvz_A 258 GKPYFGDQEPVQGFVMNF 275 (329)
T ss_dssp CCCCTTCSCCCCEEEEET
T ss_pred CCEEeccCCCcEEEEEEc
Confidence 34558889884
No 173
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.81 E-value=7e-17 Score=116.78 Aligned_cols=193 Identities=7% Similarity=0.019 Sum_probs=136.4
Q ss_pred EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEE----e------
Q 040370 15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTA----S------ 84 (228)
Q Consensus 15 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~------ 84 (228)
+..+...+.+++++|+++++++...++.|.+||..+++...............+..++++|+|+++++. +
T Consensus 64 ~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~ 143 (296)
T 3e5z_A 64 EMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEG 143 (296)
T ss_dssp EESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGS
T ss_pred EECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccc
Confidence 334667899999999999888877778999999987775433222111113457889999999988873 2
Q ss_pred -------cCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEcc-CCee---EEEEecceee
Q 040370 85 -------KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVS-SGRL---VKQYLGATHT 153 (228)
Q Consensus 85 -------~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~~---~~~~~~~~~~ 153 (228)
..+.|..++.. ++. ..+... ......++|+|+++.+++.+.++.|++||+. +++. ...+ ....
T Consensus 144 ~~~~~~~~~~~l~~~~~~-g~~-~~~~~~--~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~ 217 (296)
T 3e5z_A 144 YGGEMELPGRWVFRLAPD-GTL-SAPIRD--RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEP 217 (296)
T ss_dssp SCCCCCSSSCEEEEECTT-SCE-EEEECC--CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSS
T ss_pred ccccccCCCcEEEEECCC-CCE-EEeecC--CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCC
Confidence 13466666655 443 333332 4456889999999988777788999999997 4443 2223 1133
Q ss_pred eeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEe-CCCCcEEEEecCCC
Q 040370 154 QLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEH-SPAEAAFITCGTDR 219 (228)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~s~~~dg 219 (228)
.....+++++++...++. ++.|.+||.. ++.+..+ ..+.. +.+++| .|+++.|+.++.++
T Consensus 218 ~~p~~i~~d~~G~l~v~~---~~~v~~~~~~-g~~~~~~-~~~~~-~~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 218 GKTDGLRVDAGGLIWASA---GDGVHVLTPD-GDELGRV-LTPQT-TSNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp SCCCSEEEBTTSCEEEEE---TTEEEEECTT-SCEEEEE-ECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred CCCCeEEECCCCCEEEEc---CCeEEEECCC-CCEEEEE-ECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence 445678899999866665 4899999976 7666666 44555 899999 68988888888775
No 174
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.81 E-value=1.9e-17 Score=122.26 Aligned_cols=184 Identities=12% Similarity=0.161 Sum_probs=127.8
Q ss_pred cceEEEEEeCCCCEEEEecCC---C--eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC--------
Q 040370 20 HNVRSVSFHPSGDFLLAGTDH---P--IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD-------- 86 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~d---~--~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------- 86 (228)
..+..++|+|+|++|+.++.+ + .|.+|++.+++....... .. +..+.|+|+|+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-----~~-~~~~~wspdg~~l~~~~~~~~~~~~~~ 132 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-----KN-IRSLEWNEDSRKLLIVGFKRREDEDFI 132 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-----SE-EEEEEECTTSSEEEEEEECCCC-----
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-----CC-ccceeECCCCCEEEEEEccCCCcCCcE
Confidence 467889999999999877643 3 477888888775443321 23 8899999999988887642
Q ss_pred -------------------CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCC-------eEEEEEccC
Q 040370 87 -------------------GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS-------TVKLWEVSS 140 (228)
Q Consensus 87 -------------------g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-------~i~~wd~~~ 140 (228)
..|.+||+.+++.+..+.. . .+..+.|+|++ +++++..+. ...+|.+.+
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~---~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~ 207 (347)
T 2gop_A 133 FEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK---P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED 207 (347)
T ss_dssp ----CCCC---------CEEEEEEEETTTTEEEEEEEE---E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET
T ss_pred EEcccceeecCcccccCccceEEEEECCCCeEEeeecC---C-CcccccCCCCe-EEEEEecccccccccccccEEEeCC
Confidence 5799999988876444443 2 57788999999 777776542 344554445
Q ss_pred CeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC-------CeEEEEEcCCcceeEEeecCCCCCcEE-EEeCCCCcEE
Q 040370 141 GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS-------NEIVIWDALTAEKVAKWSSNHIGAPRW-IEHSPAEAAF 212 (228)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l 212 (228)
++. ..+.. + ..... ++|+++.++..+..+ ..|.+|| +++. ..+...+...+.. +.|+ ++ ++
T Consensus 208 ~~~-~~l~~--~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg-~~ 276 (347)
T 2gop_A 208 GKE-EKMFE--K-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK-VY 276 (347)
T ss_dssp TEE-EEEEE--E-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE-EE
T ss_pred Cce-EEecc--C-cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc-EE
Confidence 443 33332 2 22223 389999887766432 4788888 5543 3333566777886 9999 88 88
Q ss_pred EEecCCCCEEEeee
Q 040370 213 ITCGTDRSVRFWKE 226 (228)
Q Consensus 213 ~s~~~dg~i~vwd~ 226 (228)
++++.++.+++| +
T Consensus 277 ~~~~~~~~~~l~-~ 289 (347)
T 2gop_A 277 FTLFEEGSVNLY-I 289 (347)
T ss_dssp EEEEETTEEEEE-E
T ss_pred EEEecCCcEEEE-E
Confidence 999999999999 5
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.80 E-value=7.6e-18 Score=134.54 Aligned_cols=200 Identities=8% Similarity=-0.005 Sum_probs=134.6
Q ss_pred cCcceEEEEEeCCCCEEEEecCC----------CeEEEEEccc------ceEEeeeccceeeeccceeeEEeCCCCCeEE
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDH----------PIAHLYDVNT------FQCYLSANVPEISVNGAINQVRYSSTGGMYV 81 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d----------~~i~vw~~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 81 (228)
|...+..++|+|||+.|+.++.+ ..|++||+.+ ++...... .+ ...+..++|+|||++|+
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~---~~-~~~~~~~~~SpDG~~la 203 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD---DA-HRFVTGPRLSPDGRQAV 203 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC---SC-SSEECCCEECTTSSEEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEe---cC-CCcccCceECCCCCEEE
Confidence 56788999999999999988876 5899999987 55432220 11 45678899999999999
Q ss_pred EEecC--------CeEEEEeCC-CCc--eeeEEecccccceeEEEEECCCCCEEEEeeCCC--eEEEEEccCCeeEEEEe
Q 040370 82 TASKD--------GAIRLWDGV-SAN--CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS--TVKLWEVSSGRLVKQYL 148 (228)
Q Consensus 82 ~~~~d--------g~v~iwd~~-~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~ 148 (228)
.++.+ ..|++||+. +++ ....+...+ ...+..+.|+|||++++++..++ .|++||+.+++......
T Consensus 204 ~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~-~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~ 282 (662)
T 3azo_A 204 WLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP-EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR 282 (662)
T ss_dssp EEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET-TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC
T ss_pred EEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC-CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc
Confidence 88755 379999998 562 333333322 46788999999999888888888 67777776665443332
Q ss_pred cceeee------eeeEEEECCCCcEEEEeeCCCCeEEEE--EcCCcceeEEeecCCCCCcEEE-EeCCCCcEEEEecCCC
Q 040370 149 GATHTQ------LRFQAVFNDTEEFVLSIDEPSNEIVIW--DALTAEKVAKWSSNHIGAPRWI-EHSPAEAAFITCGTDR 219 (228)
Q Consensus 149 ~~~~~~------~~~~~~~~~~~~~~~~~~~~d~~i~i~--d~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~s~~~dg 219 (228)
.+.... .+..+.++|++..++++. . +.+++| |..+++ ...+ ..+...+..+ +++++.-++++++.+.
T Consensus 283 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~-~-~~~~l~~~d~~~~~-~~~l-~~~~~~~~~~~s~~~~~~~~~~~~~~~ 358 (662)
T 3azo_A 283 REEEFAGPLWTPGMRWFAPLANGLIAVVHG-K-GAAVLGILDPESGE-LVDA-AGPWTEWAATLTVSGTRAVGVAASPRT 358 (662)
T ss_dssp CSSBSSCCCCSTTCCSEEECTTSCEEEEEB-S-SSCEEEEEETTTTE-EEEC-CSSCCEEEEEEEEETTEEEEEEEETTE
T ss_pred ccccccCccccccCceEeEeCCCEEEEEEE-c-CccEEEEEECCCCc-EEEe-cCCCCeEEEEEecCCCEEEEEEcCCCC
Confidence 211100 034677888888777654 4 888888 555454 4444 5667777777 5554444555566666
Q ss_pred CEEEeee
Q 040370 220 SVRFWKE 226 (228)
Q Consensus 220 ~i~vwd~ 226 (228)
...+|.+
T Consensus 359 ~~~i~~~ 365 (662)
T 3azo_A 359 AYEVVEL 365 (662)
T ss_dssp EEEEEEE
T ss_pred CCEEEEE
Confidence 5566643
No 176
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.80 E-value=2.1e-16 Score=114.22 Aligned_cols=200 Identities=8% Similarity=0.008 Sum_probs=142.3
Q ss_pred EEEeecCcceEEEEEeCCCC-EEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370 13 FRVIQDTHNVRSVSFHPSGD-FLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL 91 (228)
Q Consensus 13 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 91 (228)
..+..+.....+++|+|+++ .++++..++.|..|+..++ ...+... ...+.+++++|+|+++++...++.|.+
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~----~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHP----SHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESS----CSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECC----CCCcceeeECCCCcEEEEecCCCeEEE
Confidence 34445667788999999998 7788888999999999887 3333222 566899999999998887777789999
Q ss_pred EeCCCCceeeEEeccc--ccceeEEEEECCCCCEEEE----ee-------------CCCeEEEEEccCCeeEEEEeccee
Q 040370 92 WDGVSANCVRSIVGAH--GTAEATSANFTKDQRFVLS----CG-------------KDSTVKLWEVSSGRLVKQYLGATH 152 (228)
Q Consensus 92 wd~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~----~~-------------~d~~i~~wd~~~~~~~~~~~~~~~ 152 (228)
||..+++......... ....+..++++|+|+++++ |+ ..+.|..+|.. ++. ..+.. .
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~--~ 170 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIR--D 170 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEEC--C
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeec--C
Confidence 9998877544332211 1224567999999998887 33 13456666654 443 23322 3
Q ss_pred eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcC-Ccce---eEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 153 TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL-TAEK---VAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
......++++|+++.+ .+...++.|.+||+. +++. ...+ ..+...+..++++++|+++++. ++.|.+||.
T Consensus 171 ~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 171 RVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp CSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred CCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 3345678999999998 666667999999987 4443 2333 3455667889999999977766 788999974
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.79 E-value=9.1e-17 Score=129.35 Aligned_cols=197 Identities=9% Similarity=0.062 Sum_probs=137.5
Q ss_pred cceEEEEEeCCCCEEEEecCCC-----eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe------
Q 040370 20 HNVRSVSFHPSGDFLLAGTDHP-----IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA------ 88 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~d~-----~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~------ 88 (228)
..+..++|||||++||.+..++ .|++||+.+++...... . ...+..++|+|||+.|+.++.++.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~----~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL----E-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDG 199 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE----E-EECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc----c-CcccceEEEEeCCCEEEEEEECCccccccc
Confidence 4688999999999998765433 89999999988654321 1 223678999999999999888766
Q ss_pred ----------EEEEeCCCCcee--eEEecccccceeEEEEECCCCCEEEEeeC-----CCeEEEEEccC------Ce-eE
Q 040370 89 ----------IRLWDGVSANCV--RSIVGAHGTAEATSANFTKDQRFVLSCGK-----DSTVKLWEVSS------GR-LV 144 (228)
Q Consensus 89 ----------v~iwd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~~wd~~~------~~-~~ 144 (228)
|++|++.+++.. ..+....+...+..+.|+||+++|+..+. +..|++||+.+ +. ..
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 279 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence 999999887632 22232222445788999999999887764 57899999986 43 34
Q ss_pred EEEecceeeeeeeEEEECCCCcEEEEeeCC---CCeEEEEEcCCcce--eEEeecCCC-CCcEEEEeCCCCcEEEEecCC
Q 040370 145 KQYLGATHTQLRFQAVFNDTEEFVLSIDEP---SNEIVIWDALTAEK--VAKWSSNHI-GAPRWIEHSPAEAAFITCGTD 218 (228)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~--~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d 218 (228)
..+..+ ..... ..+++++..++..+.. ++.|.+||+.++.. ...+...+. ..+..+.|++++.++++...|
T Consensus 280 ~~l~~~--~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~ 356 (710)
T 2xdw_A 280 VKLIDN--FEGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356 (710)
T ss_dssp EEEECS--SSSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred EEeeCC--CCcEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence 444432 22222 2467788877665543 34799999987642 233322323 367889998888888999889
Q ss_pred CCEEEe
Q 040370 219 RSVRFW 224 (228)
Q Consensus 219 g~i~vw 224 (228)
+..+||
T Consensus 357 g~~~l~ 362 (710)
T 2xdw_A 357 VKNTLQ 362 (710)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 865554
No 178
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.78 E-value=4.4e-17 Score=130.89 Aligned_cols=200 Identities=7% Similarity=0.039 Sum_probs=136.5
Q ss_pred cCcceEEEEEeCCCCEEE-----EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe----
Q 040370 18 DTHNVRSVSFHPSGDFLL-----AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA---- 88 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~-----~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~---- 88 (228)
|...+..++|||||++|| .|+.+..|++||+.+++........ ......++|+|+|+.|+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~----~~~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE----GGKYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS----CCTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC----cccccceEEecCCCEEEEEEecCCCCCc
Confidence 444689999999999999 4555679999999998753111111 112268999999999999988776
Q ss_pred ---------EEEEeCCCCcee--eEEecccccceeEEEEECCCCCEEEEeeCCC----eEEEEEccCCeeEEEEecceee
Q 040370 89 ---------IRLWDGVSANCV--RSIVGAHGTAEATSANFTKDQRFVLSCGKDS----TVKLWEVSSGRLVKQYLGATHT 153 (228)
Q Consensus 89 ---------v~iwd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~~wd~~~~~~~~~~~~~~~~ 153 (228)
|++|++.+++.. ..+....+...+..+.|+|||++|+.++.++ .|+++|..+++.. .+.. +.
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~--~~ 271 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVK--GV 271 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEE--CS
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-Eeec--CC
Confidence 999999887632 2233322245788999999999998877666 6777776555433 3332 22
Q ss_pred eeeeEEEECCCCcEEEEeeC---CCCeEEEEEcCCcce--eEEeecCC-CCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 154 QLRFQAVFNDTEEFVLSIDE---PSNEIVIWDALTAEK--VAKWSSNH-IGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~---~d~~i~i~d~~~~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.......+ +++. ++..+. .++.|.+||+.+++. ...+...+ ...+..++|+ ++.++++...|+..++|.+.
T Consensus 272 ~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 272 GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 23334445 4555 444433 358999999987753 23332333 4567888888 77888999999999988653
No 179
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.78 E-value=1.8e-16 Score=116.35 Aligned_cols=202 Identities=11% Similarity=0.050 Sum_probs=143.5
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeecccee-eeccceeeEEeCCCCCeEEEEe-cCCeEEEEeC
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEI-SVNGAINQVRYSSTGGMYVTAS-KDGAIRLWDG 94 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~-~dg~v~iwd~ 94 (228)
........++++++++.+++...++.|.+||..+++.......... ........+++ .+++.+++.. .++.|.++|+
T Consensus 81 ~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~ 159 (328)
T 3dsm_A 81 TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDT 159 (328)
T ss_dssp ECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEET
T ss_pred CCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEEC
Confidence 4457789999999885444444789999999999887655543210 00114566777 3444444443 4889999999
Q ss_pred CCCceeeEEecccccceeEEEEECCCCCEEEEeeCC----------CeEEEEEccCCeeEEEEecceeeeeeeEEEECCC
Q 040370 95 VSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD----------STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT 164 (228)
Q Consensus 95 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (228)
.+++....+... .....+.++|++++++++..+ +.|.++|..+++....+... .......++++|+
T Consensus 160 ~t~~~~~~i~~g---~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~-~g~~p~~la~~~d 235 (328)
T 3dsm_A 160 ETDKVVDELTIG---IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK-LGDWPSEVQLNGT 235 (328)
T ss_dssp TTTEEEEEEECS---SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC-TTCCCEEEEECTT
T ss_pred CCCeEEEEEEcC---CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC-CCCCceeEEEecC
Confidence 999888877653 345678899999977776654 78999999998877666432 1235678999999
Q ss_pred CcEEEEeeCCCCeEEEEEcCCcceeEE-eecCCCCCcEEEEeCC-CCcEEEEe----cCCCCEEEeee
Q 040370 165 EEFVLSIDEPSNEIVIWDALTAEKVAK-WSSNHIGAPRWIEHSP-AEAAFITC----GTDRSVRFWKE 226 (228)
Q Consensus 165 ~~~~~~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~s~----~~dg~i~vwd~ 226 (228)
++.++++.. .|.+||..+++.... +..........++++| ++.++++. ..++.|.+||.
T Consensus 236 ~~~lyv~~~---~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 236 RDTLYWINN---DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp SCEEEEESS---SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred CCEEEEEcc---EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence 998888643 899999988775422 1122246788999999 56666666 67889999985
No 180
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.78 E-value=2.8e-18 Score=128.74 Aligned_cols=195 Identities=9% Similarity=-0.066 Sum_probs=132.4
Q ss_pred eEEEEEeCCCCEEEEecCC---CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370 22 VRSVSFHPSGDFLLAGTDH---PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN 98 (228)
Q Consensus 22 v~~~~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 98 (228)
+..++|+|+|++|+..... ..|.+||+.+++........ ......+.|+|+|+.|+.++.++.|++||+.+++
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~----~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGK----GDNTFGGFISTDERAFFYVKNELNLMKVDLETLE 113 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSS----CBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCC----CCccccceECCCCCEEEEEEcCCcEEEEECCCCC
Confidence 7788999999998876443 47888999888754332211 2223347899999999999999999999998887
Q ss_pred eeeEEecccccceeEE-------------------EEECCCCCEEEEe-----eCCCeEEEEEccCCeeEEEEecceeee
Q 040370 99 CVRSIVGAHGTAEATS-------------------ANFTKDQRFVLSC-----GKDSTVKLWEVSSGRLVKQYLGATHTQ 154 (228)
Q Consensus 99 ~~~~~~~~~~~~~i~~-------------------~~~~~~~~~l~~~-----~~d~~i~~wd~~~~~~~~~~~~~~~~~ 154 (228)
.......+. ..... ..|+|+++.++.. ..+..|++||+.+++...... +..
T Consensus 114 ~~~~~~~~~--~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~---~~~ 188 (396)
T 3c5m_A 114 EQVIYTVDE--EWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ---DTA 188 (396)
T ss_dssp EEEEEECCT--TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE---ESS
T ss_pred cEEEEeccc--ccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc---CCc
Confidence 655554332 11111 3567778776654 356789999998877654442 445
Q ss_pred eeeEEEECC-CCcEEEEeeCC-C----CeEEEEEcCCcceeEEeecCC-CCCcEEEEeCCCCcEEEEecCC-----CCEE
Q 040370 155 LRFQAVFND-TEEFVLSIDEP-S----NEIVIWDALTAEKVAKWSSNH-IGAPRWIEHSPAEAAFITCGTD-----RSVR 222 (228)
Q Consensus 155 ~~~~~~~~~-~~~~~~~~~~~-d----~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d-----g~i~ 222 (228)
.+..+.|+| ++..++..... . ..|.+||+..++..... ... ...+..+.|+|++++|+.++.+ +.|.
T Consensus 189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 189 WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK-EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS-CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee-ccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence 567888999 77766554432 2 46889998765533322 221 2357889999999988776543 3499
Q ss_pred Eeee
Q 040370 223 FWKE 226 (228)
Q Consensus 223 vwd~ 226 (228)
+||+
T Consensus 268 ~~d~ 271 (396)
T 3c5m_A 268 KANP 271 (396)
T ss_dssp EECT
T ss_pred EEEC
Confidence 9985
No 181
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=2.6e-17 Score=123.21 Aligned_cols=201 Identities=11% Similarity=-0.038 Sum_probs=132.3
Q ss_pred cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeE--EeCCCCCeEEEE------------
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQV--RYSSTGGMYVTA------------ 83 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~l~~~------------ 83 (228)
+...+..++|+|+++.|+.++.++.|++||+.+++.......+ ...+... .++|+++.++..
T Consensus 79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~----~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~ 154 (388)
T 3pe7_A 79 RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVP----AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTD 154 (388)
T ss_dssp SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC----TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS
T ss_pred CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeech----hhcccccceeECCCCCeeccccccCcccccccc
Confidence 4444456789999999999999999999999998765544332 2333333 348999887743
Q ss_pred ----------ecCCeEEEEeCCCCceeeEEecccccceeEEEEECC-CCCEEEEeeCC------CeEEEEEccCCeeEEE
Q 040370 84 ----------SKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKD------STVKLWEVSSGRLVKQ 146 (228)
Q Consensus 84 ----------~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------~~i~~wd~~~~~~~~~ 146 (228)
..+..|.+||+.+++....... ...+..+.|+| +++.|+....+ ..|.++|+..++. ..
T Consensus 155 ~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~ 230 (388)
T 3pe7_A 155 WKKFHEFYFTKPCCRLMRVDLKTGESTVILQE---NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RK 230 (388)
T ss_dssp HHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE---SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EE
T ss_pred cchhhhhhccCCcceEEEEECCCCceEEeecC---CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EE
Confidence 2346899999998875544432 45688999999 99988877653 3788888765543 33
Q ss_pred EecceeeeeeeEEEECCCCcEEEEeeCCCC----eEEEEEcCCcceeEEee-cCCC---CCcEEEEeCCCCcEEEEe---
Q 040370 147 YLGATHTQLRFQAVFNDTEEFVLSIDEPSN----EIVIWDALTAEKVAKWS-SNHI---GAPRWIEHSPAEAAFITC--- 215 (228)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----~i~i~d~~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~l~s~--- 215 (228)
+........+....|+|+++.++..+..++ .|++||+.+++...... .++. .....+.|+|+|+.|+..
T Consensus 231 l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 310 (388)
T 3pe7_A 231 VKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQD 310 (388)
T ss_dssp SCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------
T ss_pred eeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeee
Confidence 332211235667889999997755443222 39999999887533221 1110 002224799999887754
Q ss_pred ------cCCCCEEEeee
Q 040370 216 ------GTDRSVRFWKE 226 (228)
Q Consensus 216 ------~~dg~i~vwd~ 226 (228)
..+..|.+||+
T Consensus 311 ~~~~~~~~~~~i~~~d~ 327 (388)
T 3pe7_A 311 DSGYKIENDPFLYVFNM 327 (388)
T ss_dssp ------CCCCEEEEEET
T ss_pred ccccccCCCCEEEEEec
Confidence 45668999985
No 182
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.77 E-value=5.5e-16 Score=110.85 Aligned_cols=185 Identities=12% Similarity=0.106 Sum_probs=143.3
Q ss_pred CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEeccccc
Q 040370 30 SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGT 109 (228)
Q Consensus 30 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 109 (228)
.++.|++++.++.|.+||.++++.+..+.... ...+.++.++|+|++++ +.++.|..||. +++.+..+.... .
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~---~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~-~ 76 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK---GWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPA-G 76 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCT---TCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCT-T
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc---cCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCC-C
Confidence 46789999999999999999999887776431 13688999999999888 35788999998 899888887642 3
Q ss_pred ceeEEEEECCCCCEEEEeeC-CCeEEEEEccCCeeEEEEecce----eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcC
Q 040370 110 AEATSANFTKDQRFVLSCGK-DSTVKLWEVSSGRLVKQYLGAT----HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL 184 (228)
Q Consensus 110 ~~i~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~ 184 (228)
..+.++.+.++++++++.+. ++.+..+|. +++.+..+.... +......+...+++.++++... ++.|..||..
T Consensus 77 ~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~-~~~v~~~d~~ 154 (276)
T 3no2_A 77 CEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA-TSEVREIAPN 154 (276)
T ss_dssp CEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT-TTEEEEECTT
T ss_pred ccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC-CCEEEEECCC
Confidence 57888999999999999887 778888885 677777664311 1112334567888998877554 7999999987
Q ss_pred CcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 185 TAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 185 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
|+.+.++.. ...+.++...++++.+++++.+++|..+|.
T Consensus 155 -G~~~w~~~~--~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~ 193 (276)
T 3no2_A 155 -GQLLNSVKL--SGTPFSSAFLDNGDCLVACGDAHCFVQLNL 193 (276)
T ss_dssp -SCEEEEEEC--SSCCCEEEECTTSCEEEECBTTSEEEEECT
T ss_pred -CCEEEEEEC--CCCccceeEcCCCCEEEEeCCCCeEEEEeC
Confidence 988888732 245667888899999999888888888774
No 183
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.77 E-value=1.6e-15 Score=118.44 Aligned_cols=190 Identities=13% Similarity=0.053 Sum_probs=144.1
Q ss_pred CCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC--CCceeeEEecc
Q 040370 29 PSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV--SANCVRSIVGA 106 (228)
Q Consensus 29 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~ 106 (228)
|.+.++++...++.|.++|..+++.+..+.. ...+..+.|+|+|+++++++.|+.|.+||+. +++.+..+..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-----g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~- 238 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-----GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI- 238 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-----SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-----CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-
Confidence 4455667778899999999999987776654 3456789999999999999999999999996 7777777765
Q ss_pred cccceeEEEEEC----CCCCEEEEeeC-CCeEEEEEccCCeeEEEEecce--------e-eeeeeEEEECCCCcEEEEee
Q 040370 107 HGTAEATSANFT----KDQRFVLSCGK-DSTVKLWEVSSGRLVKQYLGAT--------H-TQLRFQAVFNDTEEFVLSID 172 (228)
Q Consensus 107 ~~~~~i~~~~~~----~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~ 172 (228)
......++|+ |+|++++++.. ++++.++|..+.+.+..+.... + ...+..+..++++..++...
T Consensus 239 --G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~ 316 (567)
T 1qks_A 239 --GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 316 (567)
T ss_dssp --CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred --CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe
Confidence 3346789999 69998887765 5899999999998887765321 1 11345677778777666666
Q ss_pred CCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEec-CCCCEEEeee
Q 040370 173 EPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCG-TDRSVRFWKE 226 (228)
Q Consensus 173 ~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~ 226 (228)
..+|.|.++|....+.+.............+.|+|++++++++. .++.|.++|+
T Consensus 317 ~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~ 371 (567)
T 1qks_A 317 KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDT 371 (567)
T ss_dssp TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred cCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence 77899999998876543332223344577889999999876655 6788999986
No 184
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.75 E-value=2.8e-16 Score=112.02 Aligned_cols=197 Identities=8% Similarity=0.064 Sum_probs=139.5
Q ss_pred cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce
Q 040370 20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC 99 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 99 (228)
..+.+++++++++.+++.. ++.|.+||........ .... . ...+..++++|+++++++...++.|.+|+..+...
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~-~~~~--~-~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 141 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV-LPFD--G-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ 141 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE-CCCC--S-CSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee-eecC--C-cCCCcceEECCCCCEEEEECCCCEEEEEECCCcee
Confidence 5678899999998666665 8899999987654322 1111 1 35678999999999887777889999998655443
Q ss_pred eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEE
Q 040370 100 VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIV 179 (228)
Q Consensus 100 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 179 (228)
...... ....+.+++++++++.+++...++.|.+||............ .......+++.+++...+ +...++.|.
T Consensus 142 ~~~~~~--~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~g~l~v-~~~~~~~v~ 216 (270)
T 1rwi_B 142 TVLPFT--GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT--DITAPWGIAVDEAGTVYV-TEHNTNQVV 216 (270)
T ss_dssp EECCCC--SCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS--SCCSEEEEEECTTCCEEE-EETTTSCEE
T ss_pred Eeeccc--cCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeeccc--CCCCceEEEECCCCCEEE-EECCCCcEE
Confidence 322111 123567899999998777777788999999876554332221 224567788999885444 454468999
Q ss_pred EEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 180 IWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 180 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
+||........ ....+...+.+++++|+|+++++...++.|+++++.
T Consensus 217 ~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 217 KLLAGSTTSTV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp EECTTCSCCEE-CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred EEcCCCCccee-eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence 99986554333 222344678999999999988999999999999863
No 185
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.74 E-value=1.7e-14 Score=112.67 Aligned_cols=205 Identities=11% Similarity=0.099 Sum_probs=146.2
Q ss_pred EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcc--cceEEeeeccceeeeccceeeEEeC----CCCCeEEEEec-CC
Q 040370 15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVN--TFQCYLSANVPEISVNGAINQVRYS----STGGMYVTASK-DG 87 (228)
Q Consensus 15 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~~~-dg 87 (228)
.+.....+..+.|+|+++++++++.++.|.+||+. +++.+..... ......++|+ |+|+++++++. ++
T Consensus 192 ~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-----G~~P~~ia~s~~~~pDGk~l~v~n~~~~ 266 (567)
T 1qks_A 192 VLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-----GSEARSIETSKMEGWEDKYAIAGAYWPP 266 (567)
T ss_dssp EEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-----CSEEEEEEECCSTTCTTTEEEEEEEETT
T ss_pred EEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-----CCCCceeEEccccCCCCCEEEEEEccCC
Confidence 33445567899999999999999999999999995 6666554443 3345789999 69998887665 59
Q ss_pred eEEEEeCCCCceeeEEeccc---------ccceeEEEEECCCCCE-EEEeeCCCeEEEEEccCCeeEEEEecceeeeeee
Q 040370 88 AIRLWDGVSANCVRSIVGAH---------GTAEATSANFTKDQRF-VLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRF 157 (228)
Q Consensus 88 ~v~iwd~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~-l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 157 (228)
.|.++|..+.+.+..+.... ....+..+..++++.. ++....+|.|.++|....+.+..... .......
T Consensus 267 ~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~ 345 (567)
T 1qks_A 267 QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLH 345 (567)
T ss_dssp EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEE
T ss_pred eEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-ecccccc
Confidence 99999999999888776421 0225678888887654 55556679999999877543322211 1223445
Q ss_pred EEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec----CCCCCcEEEEeCCCC-cEEEEec-CCCCEEEeee
Q 040370 158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS----NHIGAPRWIEHSPAE-AAFITCG-TDRSVRFWKE 226 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~v~~~~~~~~~-~~l~s~~-~dg~i~vwd~ 226 (228)
...|+|++++++++...++.|.++|..+++....+.. .|.+.-..+ ++|++ ..++++. .++.|.++|.
T Consensus 346 d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~ 419 (567)
T 1qks_A 346 DGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGT 419 (567)
T ss_dssp EEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred CceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecC
Confidence 6789999999998887789999999999987776644 243322222 57874 4445553 4688999985
No 186
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.74 E-value=4.9e-16 Score=115.18 Aligned_cols=177 Identities=7% Similarity=0.045 Sum_probs=130.9
Q ss_pred cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEee-----ecc-ceeeeccceeeEEeCCCCCeEEEEecCCeEEEEe
Q 040370 20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLS-----ANV-PEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD 93 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~-----~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd 93 (228)
.+++.+++++...++++|+.++ +.+|++++.+.... ... ....+.. |+.++| +++.|+++ .++.|++||
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 3689999999999999999885 56799875441000 111 1112255 999999 88999998 889999999
Q ss_pred CCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370 94 GVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE 173 (228)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
+++.........+ ...+.++.+.+. .+++++.||.+.+||+.+++... ....+.+++|+|.| ++++ .
T Consensus 113 v~sl~~~~~~~~~--~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~------~~~~Vs~v~WSpkG--~~vg-~ 179 (388)
T 1xip_A 113 LEELSEFRTVTSF--EKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ------LAQNVTSFDVTNSQ--LAVL-L 179 (388)
T ss_dssp SSSTTCEEEEEEC--SSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE------EEESEEEEEECSSE--EEEE-E
T ss_pred chhhhccCcccee--ecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc------ccCCceEEEEcCCc--eEEE-E
Confidence 9887655555444 456777777654 38889999999999999876542 34578899999999 3443 3
Q ss_pred CCCeEEEEEcCCcce--eEEee-----c---CCCCCcEEEEeCCCCcEEEE
Q 040370 174 PSNEIVIWDALTAEK--VAKWS-----S---NHIGAPRWIEHSPAEAAFIT 214 (228)
Q Consensus 174 ~d~~i~i~d~~~~~~--~~~~~-----~---~~~~~v~~~~~~~~~~~l~s 214 (228)
.||.+++|+...++. ..++. . +|...|.++.|.+++.++++
T Consensus 180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 479999998877664 34441 1 47788999999999998886
No 187
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.74 E-value=5.4e-15 Score=108.45 Aligned_cols=193 Identities=11% Similarity=0.019 Sum_probs=138.8
Q ss_pred ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCcee
Q 040370 21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCV 100 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 100 (228)
....+.+. +++.+++...++.|.++|..+++.+..+.. ......++++++++.+++...++.|.+||+.+++..
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-----~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~ 118 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-----FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT 118 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-----CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-----CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE
Confidence 45777774 455556666689999999999987766532 456788999888854444447899999999999888
Q ss_pred eEEecccc---cceeEEEEECCCCCEEEEee--CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC-
Q 040370 101 RSIVGAHG---TAEATSANFTKDQRFVLSCG--KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP- 174 (228)
Q Consensus 101 ~~~~~~~~---~~~i~~~~~~~~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 174 (228)
..+..... ......+++ ++..++.+. .++.|.++|+.+++....+... .....+.++|+++.++++...
T Consensus 119 ~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g---~~p~~i~~~~dG~l~v~~~~~~ 193 (328)
T 3dsm_A 119 GYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG---IQPTSLVMDKYNKMWTITDGGY 193 (328)
T ss_dssp EEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS---SCBCCCEECTTSEEEEEBCCBC
T ss_pred EEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC---CCccceEEcCCCCEEEEECCCc
Confidence 77765320 013445666 344455444 4889999999999888777542 234567889999876665442
Q ss_pred --------CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 175 --------SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 175 --------d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
.+.|.++|..+++....+.......+..++++|+++.|+.+.. .|.+||+
T Consensus 194 ~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~ 251 (328)
T 3dsm_A 194 EGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPV 251 (328)
T ss_dssp TTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEET
T ss_pred cCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEEC
Confidence 2789999999888776663333347899999999998887765 7888885
No 188
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.73 E-value=3.5e-16 Score=114.87 Aligned_cols=197 Identities=11% Similarity=0.072 Sum_probs=137.9
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN 98 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 98 (228)
...|.+++|+|++..++..+.++.++.|. ++....+.. + ...+.+++|+|++++++++..++.|.+||..+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~-~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~ 77 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLEISK---K-GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE 77 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEEES---S-CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred ccccceeeecCCccceeEEeecccCcccc---cceeEEEec---c-CccccCcEECCCCCEEEEECCCCEEEEEeCCCCc
Confidence 34678889999888887777788889992 233222221 1 3456889999999988888889999999998877
Q ss_pred eeeEEecccccceeEEEEECCCCCEEEEeeCC----CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC
Q 040370 99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKD----STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP 174 (228)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
........ ...+.+++++|+++++++...+ +.|.+||..+++....+........+..+.++|++..+++....
T Consensus 78 ~~~~~~~~--~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~ 155 (333)
T 2dg1_A 78 IKRPFVSH--KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRG 155 (333)
T ss_dssp EEEEEECS--SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCC
T ss_pred EEEEeeCC--CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccc
Confidence 65544332 4578999999999888777666 68999998876654333222233456788999999877765421
Q ss_pred -----CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEE-EEecCCCCEEEeee
Q 040370 175 -----SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAF-ITCGTDRSVRFWKE 226 (228)
Q Consensus 175 -----d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~ 226 (228)
.+.|..+|..+++..... .+...+..++|+|+++.| ++.+.++.|.+||+
T Consensus 156 ~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~ 211 (333)
T 2dg1_A 156 YSTNPLGGVYYVSPDFRTVTPII--QNISVANGIALSTDEKVLWVTETTANRLHRIAL 211 (333)
T ss_dssp BTTBCCEEEEEECTTSCCEEEEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred cccCCCceEEEEeCCCCEEEEee--cCCCcccceEECCCCCEEEEEeCCCCeEEEEEe
Confidence 256777776554443322 233457889999999855 55556788999986
No 189
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.73 E-value=6.1e-15 Score=109.55 Aligned_cols=178 Identities=8% Similarity=0.064 Sum_probs=118.1
Q ss_pred cceEEEEEeCCCCEEEEecC--CCeEEEEEcccceEEee-eccceeeeccceeeEEeCCCC-CeEEEEe-----------
Q 040370 20 HNVRSVSFHPSGDFLLAGTD--HPIAHLYDVNTFQCYLS-ANVPEISVNGAINQVRYSSTG-GMYVTAS----------- 84 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~--d~~i~vw~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~-~~l~~~~----------- 84 (228)
.....++++|+|++|+++.. ++.|.+||+.+++.+.. ...... ..+.+.|++ ..+++.+
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~------~~v~~~p~~~~~~~~~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC------WSVIPQPNRPRSFMTICGDGGLLTINLG 181 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE------EEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc------ceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence 45667999999999998864 58999999999887665 432111 112223322 2233333
Q ss_pred -------------------------------------cCCeEEEEeCCCCcee--eEEeccc--------ccceeEEEEE
Q 040370 85 -------------------------------------KDGAIRLWDGVSANCV--RSIVGAH--------GTAEATSANF 117 (228)
Q Consensus 85 -------------------------------------~dg~v~iwd~~~~~~~--~~~~~~~--------~~~~i~~~~~ 117 (228)
.++.|.++|+...... ..+.... .......++|
T Consensus 182 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~ 261 (361)
T 2oiz_A 182 EDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGL 261 (361)
T ss_dssp TTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEE
T ss_pred CCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEE
Confidence 3444555554332211 1111000 0000112688
Q ss_pred CCCCCEEEEeeC-----------CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCc
Q 040370 118 TKDQRFVLSCGK-----------DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA 186 (228)
Q Consensus 118 ~~~~~~l~~~~~-----------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 186 (228)
+|+++.++++.. .+.|.+||+.+++.+..+.... ...+.++|+++++++++. +.|.+||..++
T Consensus 262 ~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~----p~~ia~spdg~~l~v~n~--~~v~v~D~~t~ 335 (361)
T 2oiz_A 262 HRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD----ALSMTIDQQRNLMLTLDG--GNVNVYDISQP 335 (361)
T ss_dssp ETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT----CCEEEEETTTTEEEEECS--SCEEEEECSSS
T ss_pred ecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC----eeEEEECCCCCEEEEeCC--CeEEEEECCCC
Confidence 999888776643 3489999999999999887632 788999999999888764 99999999999
Q ss_pred --ceeEEeecCCCCCcEEEEeCCCCc
Q 040370 187 --EKVAKWSSNHIGAPRWIEHSPAEA 210 (228)
Q Consensus 187 --~~~~~~~~~~~~~v~~~~~~~~~~ 210 (228)
+.+..+ ..+......++++|+|+
T Consensus 336 ~l~~~~~i-~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 336 EPKLLRTI-EGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEEE-TTSCSSEEEEEECCCSC
T ss_pred cceeeEEe-ccCCCCcEEEEecCCCC
Confidence 888776 45667788999999885
No 190
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.73 E-value=9e-17 Score=120.51 Aligned_cols=191 Identities=9% Similarity=-0.075 Sum_probs=129.4
Q ss_pred EEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceee-------------------EEeCCCCCeEEEE-
Q 040370 24 SVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQ-------------------VRYSSTGGMYVTA- 83 (228)
Q Consensus 24 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~-------------------~~~~~~~~~l~~~- 83 (228)
.+.|+|++++|+.++.++.|++|++.+++........ ...... +.|+|+++.++.+
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~----~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~ 160 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVD----EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAE 160 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC----TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHH
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecc----cccCCCCCEEEeccCCccccccccccccCCCCcceeeee
Confidence 3789999999999998899999999887754433321 111111 3578888876654
Q ss_pred ----ecCCeEEEEeCCCCceeeEEecccccceeEEEEECC-CCCEEEEeeCC------CeEEEEEccCCeeEEEEeccee
Q 040370 84 ----SKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKD------STVKLWEVSSGRLVKQYLGATH 152 (228)
Q Consensus 84 ----~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~~~ 152 (228)
..+..|.+||+.+++....... ...+..+.|+| +++.|+..+.+ ..|.+||+..++... +.....
T Consensus 161 ~~~~~~~~~l~~~d~~~g~~~~~~~~---~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~ 236 (396)
T 3c5m_A 161 FYHTNPTCRLIKVDIETGELEVIHQD---TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAE 236 (396)
T ss_dssp HHHTCCCEEEEEEETTTCCEEEEEEE---SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCT
T ss_pred eccCCCcceEEEEECCCCcEEeeccC---CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCC
Confidence 3567899999988876554432 55788999999 78877766543 468899987654332 222111
Q ss_pred eeeeeEEEECCCCcEEEEeeCCC----CeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCcEEEEec-----------
Q 040370 153 TQLRFQAVFNDTEEFVLSIDEPS----NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCG----------- 216 (228)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~----------- 216 (228)
...+..+.|+|++++++..+..+ +.|++||+.+++..... . .. ... +.|+| +++++++++
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~ 312 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM-V-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADAD 312 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE-E-CC-SEE-EEEECSSSSEEEEEECCC--------
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee-e-CC-CCC-CCccCCCCceEEEecCCcceeecccc
Confidence 33567789999999877654321 44999999887654432 1 11 123 88999 999888754
Q ss_pred -----CCCCEEEeee
Q 040370 217 -----TDRSVRFWKE 226 (228)
Q Consensus 217 -----~dg~i~vwd~ 226 (228)
.++.|.+||+
T Consensus 313 ~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 313 SYNIENDPFLYVLNT 327 (396)
T ss_dssp --CCCCCCEEEEEET
T ss_pred ccccCCCCcEEEEec
Confidence 3467888885
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.72 E-value=6e-15 Score=105.08 Aligned_cols=195 Identities=12% Similarity=0.032 Sum_probs=134.6
Q ss_pred ceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce
Q 040370 21 NVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC 99 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 99 (228)
...+++++|+++.++ +...++.|.+|+..+....... . .. ...+.+++++++++++++.. ++.|.+||......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~-~--~~-~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-F--NG-LYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC-C--CS-CCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe-e--CC-cCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE
Confidence 788999999998777 5477889999987665432211 1 11 34678999999998666665 88999999875543
Q ss_pred eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEE
Q 040370 100 VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIV 179 (228)
Q Consensus 100 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 179 (228)
..+... ....+..++++++++.+++...++.|.+||..+....... .........+++++++...++ ...++.|.
T Consensus 100 -~~~~~~-~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~--~~~~~~p~~i~~~~~g~l~v~-~~~~~~i~ 174 (270)
T 1rwi_B 100 -TVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP--FTGLNDPDGVAVDNSGNVYVT-DTDNNRVV 174 (270)
T ss_dssp -EECCCC-SCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC--CCSCCSCCCEEECTTCCEEEE-EGGGTEEE
T ss_pred -eeeecC-CcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec--cccCCCceeEEEeCCCCEEEE-ECCCCEEE
Confidence 223221 1356789999999997777777889999986554332221 112234567888998875555 44368999
Q ss_pred EEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 180 IWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 180 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
+||.......... ..+...+..++++++|.++++...++.|.+|+.
T Consensus 175 ~~~~~~~~~~~~~-~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~ 220 (270)
T 1rwi_B 175 KLEAESNNQVVLP-FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA 220 (270)
T ss_dssp EECTTTCCEEECC-CSSCCSEEEEEECTTCCEEEEETTTSCEEEECT
T ss_pred EEecCCCceEeec-ccCCCCceEEEECCCCCEEEEECCCCcEEEEcC
Confidence 9998766544332 334467899999999988888878889999975
No 192
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.71 E-value=2e-14 Score=102.74 Aligned_cols=195 Identities=12% Similarity=0.097 Sum_probs=145.7
Q ss_pred cceeEEEeecC-cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-C
Q 040370 9 AKRAFRVIQDT-HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK-D 86 (228)
Q Consensus 9 ~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d 86 (228)
.+...++..+. ..+.+++++|+|+++++ .++.|..||. +++.+..+.... ...+.++.+.|+|+.+++.+. +
T Consensus 25 G~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~---~~~~~~~~~~~dG~~lv~~~~~~ 98 (276)
T 3no2_A 25 KEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPA---GCEMQTARILPDGNALVAWCGHP 98 (276)
T ss_dssp TEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCT---TCEEEEEEECTTSCEEEEEESTT
T ss_pred CeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCC---CccccccEECCCCCEEEEecCCC
Confidence 34445554444 47899999999998883 4678999999 788777766531 246788999999999998887 7
Q ss_pred CeEEEEeCCCCceeeEEeccc----ccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEEC
Q 040370 87 GAIRLWDGVSANCVRSIVGAH----GTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFN 162 (228)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (228)
+.+..+|. +++.+..+.... .......+.+.++++++++...++.|..||.. ++.+.++... .....+...
T Consensus 99 ~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~---~~~~~~~~~ 173 (276)
T 3no2_A 99 STILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS---GTPFSSAFL 173 (276)
T ss_dssp EEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS---SCCCEEEEC
T ss_pred CEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC---CCccceeEc
Confidence 88888885 677776665321 11234456788999999999999999999987 9998888753 234456677
Q ss_pred CCCcEEEEeeCCCCeEEEEEcCCcceeEEeecC-----CCCCcEEEEeCCCCcEEEEe
Q 040370 163 DTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN-----HIGAPRWIEHSPAEAAFITC 215 (228)
Q Consensus 163 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~ 215 (228)
+++..+++... ++.|..+|..+++.+.++... ....+..+...++|..+++.
T Consensus 174 ~~g~~~v~~~~-~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 174 DNGDCLVACGD-AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp TTSCEEEECBT-TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred CCCCEEEEeCC-CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 88888877655 578999999999998887421 12237788888999988887
No 193
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.71 E-value=7.1e-15 Score=118.93 Aligned_cols=197 Identities=10% Similarity=0.075 Sum_probs=134.0
Q ss_pred cceEEEEEeCCCCEEEEecCC-----CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe------
Q 040370 20 HNVRSVSFHPSGDFLLAGTDH-----PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA------ 88 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~------ 88 (228)
..+..++|||||++||.+..+ ..|++||+.+++..... . + ...+..++|+|+ +.|+.++.++.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~---~-~~~~~~~~wspD-~~l~~~~~~~~~~~~~~ 236 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-L---K-WVKFSGLAWLGN-DALLYSRFAEPKEGQAF 236 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-E---E-EEESCCCEESTT-SEEEEEECCCC------
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-C---C-CceeccEEEECC-CEEEEEEecCccccccc
Confidence 468899999999999876543 46999999998864421 1 1 223467899999 98888876654
Q ss_pred --------EEEEeCCCCcee--eEEecccccceeEEEEECCCCCEEEEeeCCC-----eEEEEEccCC--eeEEEEecce
Q 040370 89 --------IRLWDGVSANCV--RSIVGAHGTAEATSANFTKDQRFVLSCGKDS-----TVKLWEVSSG--RLVKQYLGAT 151 (228)
Q Consensus 89 --------v~iwd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~--~~~~~~~~~~ 151 (228)
|++|++.++... ..+....+...+..+.|+|||++|+..+.++ .|++||+.++ +....+...
T Consensus 237 ~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~- 315 (741)
T 1yr2_A 237 QALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD- 315 (741)
T ss_dssp --CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS-
T ss_pred ccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC-
Confidence 899998876532 2222222223578899999999988777544 8999999876 313444332
Q ss_pred eeeeeeEEEECCCCcEEEEeeCC---CCeEEEEEcCCc-ceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 152 HTQLRFQAVFNDTEEFVLSIDEP---SNEIVIWDALTA-EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
........ .|++..++..... ++.|.+||+.++ .....+...+...+..+.++ ++.++++...|+..+||.+
T Consensus 316 -~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 316 -LKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAF 391 (741)
T ss_dssp -SSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred -CCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 12222332 3777777665542 456999998875 24444434555567778887 6678888889998888864
No 194
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.71 E-value=4.2e-15 Score=119.73 Aligned_cols=199 Identities=8% Similarity=-0.010 Sum_probs=131.8
Q ss_pred ceEEEEEeCCCCEEEEecCCCe----------------EEEEEcccceEE--eeeccceeeeccceeeEEeCCCCCeEEE
Q 040370 21 NVRSVSFHPSGDFLLAGTDHPI----------------AHLYDVNTFQCY--LSANVPEISVNGAINQVRYSSTGGMYVT 82 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~~~d~~----------------i~vw~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 82 (228)
.+..++|+|||+.|+.++.++. |++|++.+++.. ...... .+...+..+.|+|+|++|+.
T Consensus 172 ~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~--~~~~~~~~~~~SpDg~~l~~ 249 (710)
T 2xdw_A 172 KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFP--DEPKWMGGAELSDDGRYVLL 249 (710)
T ss_dssp CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCT--TCTTCEEEEEECTTSCEEEE
T ss_pred ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccC--CCCeEEEEEEEcCCCCEEEE
Confidence 3678999999999998887665 999999876521 111111 11345678999999999887
Q ss_pred Eec-----CCeEEEEeCCC------Cc-eeeEEecccccceeEEEEECCCCCEEEEeeCC----CeEEEEEccCCee--E
Q 040370 83 ASK-----DGAIRLWDGVS------AN-CVRSIVGAHGTAEATSANFTKDQRFVLSCGKD----STVKLWEVSSGRL--V 144 (228)
Q Consensus 83 ~~~-----dg~v~iwd~~~------~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~~wd~~~~~~--~ 144 (228)
++. +..|.+||+.+ +. ....+..+. ..+.. .|+|+++.|+..+.. +.|.+||+.++.. .
T Consensus 250 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~--~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 326 (710)
T 2xdw_A 250 SIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF--EGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKW 326 (710)
T ss_dssp EEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS--SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGC
T ss_pred EEEccCCCccEEEEEECcccccccCCccceEEeeCCC--CcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccc
Confidence 765 56899999986 43 355555442 23333 478888877766543 3699999987642 2
Q ss_pred EEEecceeeeeeeEEEECCCCcEEEEeeCCCC--eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEe-c---CC
Q 040370 145 KQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN--EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITC-G---TD 218 (228)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~---~d 218 (228)
..+..+.....+..+.+.+++..+++. ..|+ .|.+||+.+++....+ ..+.+.+..+.++|++..++.. + ..
T Consensus 327 ~~l~~~~~~~~~~~~~~~~~~~lv~~~-~~~g~~~l~~~~~~~g~~~~~l-~~~~~~v~~~~~s~d~~~l~~~~ss~~~P 404 (710)
T 2xdw_A 327 KVLVPEHEKDVLEWVACVRSNFLVLCY-LHDVKNTLQLHDLATGALLKIF-PLEVGSVVGYSGQKKDTEIFYQFTSFLSP 404 (710)
T ss_dssp EEEECCCSSCEEEEEEEETTTEEEEEE-EETTEEEEEEEETTTCCEEEEE-CCCSSEEEEEECCTTCSEEEEEEECSSCC
T ss_pred eeccCCCCCCeEEEEEEEcCCEEEEEE-EECCEEEEEEEECCCCCEEEec-CCCCceEEEEecCCCCCEEEEEEeCCCCC
Confidence 344332222355667777665555554 4466 4666787677766666 4567788899999988765532 2 34
Q ss_pred CCEEEeee
Q 040370 219 RSVRFWKE 226 (228)
Q Consensus 219 g~i~vwd~ 226 (228)
+.+..||+
T Consensus 405 ~~i~~~d~ 412 (710)
T 2xdw_A 405 GIIYHCDL 412 (710)
T ss_dssp CEEEEEET
T ss_pred CEEEEEEC
Confidence 67888875
No 195
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.71 E-value=6.2e-15 Score=108.75 Aligned_cols=187 Identities=7% Similarity=0.036 Sum_probs=121.6
Q ss_pred EEeecCcceEEEEEeCCCCEEEEecC---------------------------CCeEEEEEcccceEEeeeccceeeecc
Q 040370 14 RVIQDTHNVRSVSFHPSGDFLLAGTD---------------------------HPIAHLYDVNTFQCYLSANVPEISVNG 66 (228)
Q Consensus 14 ~~~~~~~~v~~~~~~~~~~~l~~~~~---------------------------d~~i~vw~~~~~~~~~~~~~~~~~~~~ 66 (228)
.+..+.. +..++|+|+++.|+.++. ...|.+||+.+++....+.. .
T Consensus 99 ~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-----~- 171 (347)
T 2gop_A 99 KILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-----P- 171 (347)
T ss_dssp EEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-----E-
T ss_pred EEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-----C-
Confidence 3334444 999999999999987763 25789999988876333321 2
Q ss_pred ceeeEEeCCCCCeEEEEecCC-------eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC--------C
Q 040370 67 AINQVRYSSTGGMYVTASKDG-------AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD--------S 131 (228)
Q Consensus 67 ~i~~~~~~~~~~~l~~~~~dg-------~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------~ 131 (228)
.+..+.|+|+| +++++..++ ...+|.+.+++ ...+..+ ..+..+ +|+|++|+.++.+ .
T Consensus 172 ~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~---~~~~~~--spdg~~l~~~~~~~~~~~~~~~ 244 (347)
T 2gop_A 172 RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK---VSFYAV--DSDGERILLYGKPEKKYMSEHN 244 (347)
T ss_dssp TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE---ESEEEE--EECSSCEEEEECCSSSCCCSSC
T ss_pred CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC---cceeeE--CCCCCEEEEEEccccCCccccc
Confidence 67889999999 777776542 34555444444 3333332 233443 8999988877644 3
Q ss_pred eEEEEEccCCeeEEEEecceeeeeeeE-EEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc
Q 040370 132 TVKLWEVSSGRLVKQYLGATHTQLRFQ-AVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA 210 (228)
Q Consensus 132 ~i~~wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (228)
.|.+|| +++....... +...+.. +.|+ ++ .+++ +..++.+++| +.+++.. .+ ..+...|.+++|+| .
T Consensus 245 ~l~~~d--~~~~~~l~~~--~~~~~~~~~~~s-dg-~~~~-~~~~~~~~l~-~~~g~~~-~~-~~~~~~v~~~~~s~--~ 312 (347)
T 2gop_A 245 KLYIYD--GKEVMGILDE--VDRGVGQAKIKD-GK-VYFT-LFEEGSVNLY-IWDGEIK-PI-AKGRHWIMGFDVDE--I 312 (347)
T ss_dssp EEEEEC--SSCEEESSTT--CCSEEEEEEEET-TE-EEEE-EEETTEEEEE-EESSSEE-EE-ECSSSEEEEEEESS--S
T ss_pred eEEEEC--CCceEecccc--CCcccCCccEEc-Cc-EEEE-EecCCcEEEE-EcCCceE-EE-ecCCCeEEeeeeeC--c
Confidence 688888 5544332222 3344554 7888 76 4444 4557999999 8765543 33 24577899999999 6
Q ss_pred EEEEecCCCCE-EEeee
Q 040370 211 AFITCGTDRSV-RFWKE 226 (228)
Q Consensus 211 ~l~s~~~dg~i-~vwd~ 226 (228)
++++++.++.. .+|.+
T Consensus 313 ~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 313 VVYLKETATRLRELFTW 329 (347)
T ss_dssp EEEEEECSSSCCEEEEE
T ss_pred EEEEEcCCCChHHheEe
Confidence 77777777665 77764
No 196
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.71 E-value=1.5e-13 Score=99.84 Aligned_cols=201 Identities=8% Similarity=0.053 Sum_probs=134.4
Q ss_pred cCcceEEEEEeCC-CCEEEEecCCCeEEEEEcccceEEee-eccceeeeccceeeEEeCCCCCeEEEEecC---------
Q 040370 18 DTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQCYLS-ANVPEISVNGAINQVRYSSTGGMYVTASKD--------- 86 (228)
Q Consensus 18 ~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------- 86 (228)
+...+.+++++++ ++++++.. .+.|.+||.+ ++.... ...........+.+++++|+|+++++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 4467899999998 66555544 4478899988 665433 221111113458899999999887777655
Q ss_pred ------CeEEEEeCCCCceeeEEecccccceeEEEEEC----CCCCEEEEe-eCCCeEEEEEcc-CCeeEE--EEec-ce
Q 040370 87 ------GAIRLWDGVSANCVRSIVGAHGTAEATSANFT----KDQRFVLSC-GKDSTVKLWEVS-SGRLVK--QYLG-AT 151 (228)
Q Consensus 87 ------g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~d~~i~~wd~~-~~~~~~--~~~~-~~ 151 (228)
+.|..+|.. ++....... ......++++ |+++.++.+ ..++.|.+||+. +++... .+.. ..
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~~~~---~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~ 222 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQMIQVDTA---FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 222 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEEEEEEE---ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC
T ss_pred cccCCCCeEEEECCC-CCEEEeccC---CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCC
Confidence 578888865 544333222 3345788999 998765554 567899999986 444211 1111 11
Q ss_pred ee-eeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc-EEEEecCCCCEEEeee
Q 040370 152 HT-QLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA-AFITCGTDRSVRFWKE 226 (228)
Q Consensus 152 ~~-~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~ 226 (228)
+. .....+++++++...++... ++.|.+||..+++....+ ..+...+.+++++|+++ ++++...++.|..|++
T Consensus 223 ~~~~~p~~i~~d~~G~l~v~~~~-~~~i~~~d~~~g~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 223 THEGGADGMDFDEDNNLLVANWG-SSHIEVFGPDGGQPKMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp CSSCEEEEEEEBTTCCEEEEEET-TTEEEEECTTCBSCSEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred CCCCCCCceEECCCCCEEEEEcC-CCEEEEEcCCCCcEeEEE-eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 11 34567888999877766544 589999998877766655 34557889999999998 4555566788888875
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.69 E-value=2.6e-13 Score=97.81 Aligned_cols=199 Identities=9% Similarity=0.026 Sum_probs=141.0
Q ss_pred cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA 97 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 97 (228)
+...+.++++++++..+++...++.|..|+.+ ++. .....+. . ...+..+++.|+++++++...++.|..||. ++
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~-~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g 129 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPN-P-DSAPYGITEGPNGDIWFTEMNGNRIGRITD-DG 129 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSS-T-TCCEEEEEECTTSCEEEEETTTTEEEEECT-TC
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCC-c-CCCceeeEECCCCCEEEEecCCceEEEECC-CC
Confidence 45678999999999988887778899999976 332 2222110 1 456889999999988888777889999998 55
Q ss_pred ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCe
Q 040370 98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNE 177 (228)
Q Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 177 (228)
+... +........+..+++.++++..++...++.|..||. +++... +...........+.+.+++...++.. .++.
T Consensus 130 ~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~ 205 (299)
T 2z2n_A 130 KIRE-YELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE-FKIPTPASGPVGITKGNDDALWFVEI-IGNK 205 (299)
T ss_dssp CEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEET-TTTE
T ss_pred CEEE-ecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE-eeCCCCCCcceeEEECCCCCEEEEcc-CCce
Confidence 4432 222222456789999999988777777789999998 665443 22222234456788899888655543 3689
Q ss_pred EEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 178 IVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 178 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
|.+||. +++........+...+.+++++++++++++...++.|..||.
T Consensus 206 i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 206 IGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred EEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 999998 666443222345567899999999997777767788888874
No 198
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.69 E-value=2.3e-13 Score=98.06 Aligned_cols=200 Identities=7% Similarity=0.044 Sum_probs=142.2
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS 96 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 96 (228)
.+...+.++++.++++.+++...++.|.+||.. ++..... ... . ...+.++++.++++++++...++.|..||..
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~-~~~-~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYP-LPT-P-DAKVMCLTISSDGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEE-CSS-T-TCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEec-CCc-c-cCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence 455789999999999988877768899999988 5533221 111 1 4568899999999988887778899999976
Q ss_pred CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370 97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN 176 (228)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 176 (228)
++ ...+........+..+++.+++.++++...++.|..||. +++... +...........+.+.+++...++. ..++
T Consensus 87 g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~-~~~~ 162 (299)
T 2z2n_A 87 GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE-YELPNKGSYPSFITLGSDNALWFTE-NQNN 162 (299)
T ss_dssp SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSCEEEEE-TTTT
T ss_pred Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE-ecCCCCCCCCceEEEcCCCCEEEEe-CCCC
Confidence 33 233332212456889999999988887777889999998 554432 2222123456778888888766654 3358
Q ss_pred eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 177 EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 177 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
.|..||. +++............+..+++++++.++++...++.|.+||.
T Consensus 163 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 163 AIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred EEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC
Confidence 9999998 665544322334567889999999998887777888888874
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.67 E-value=1.6e-13 Score=99.78 Aligned_cols=204 Identities=8% Similarity=0.110 Sum_probs=136.8
Q ss_pred eecCcceEEEEEeCCCCEEEE-------ecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCC
Q 040370 16 IQDTHNVRSVSFHPSGDFLLA-------GTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDG 87 (228)
Q Consensus 16 ~~~~~~v~~~~~~~~~~~l~~-------~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg 87 (228)
...-....+++|++++..+++ +..++.|.+||..+++...........+...+.+++++++ ++++++.. .+
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~ 92 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RL 92 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CC
Confidence 344556789999999988877 5778899999988776543221000001456889999999 76555444 45
Q ss_pred eEEEEeCCCCceeeE-Eecc--cccceeEEEEECCCCCEEEEeeCC---------------CeEEEEEccCCeeEEEEec
Q 040370 88 AIRLWDGVSANCVRS-IVGA--HGTAEATSANFTKDQRFVLSCGKD---------------STVKLWEVSSGRLVKQYLG 149 (228)
Q Consensus 88 ~v~iwd~~~~~~~~~-~~~~--~~~~~i~~~~~~~~~~~l~~~~~d---------------~~i~~wd~~~~~~~~~~~~ 149 (228)
.|.+||.. ++.... .... .....+.+++++++++++++...+ +.|..||.. ++......
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~- 169 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT- 169 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc-
Confidence 79999987 654322 2111 112457899999999887776655 567777765 44333222
Q ss_pred ceeeeeeeEEEEC----CCCcEEEEeeCCCCeEEEEEcC-Ccce-----eEEeecCCC-CCcEEEEeCCCCcEEEEecCC
Q 040370 150 ATHTQLRFQAVFN----DTEEFVLSIDEPSNEIVIWDAL-TAEK-----VAKWSSNHI-GAPRWIEHSPAEAAFITCGTD 218 (228)
Q Consensus 150 ~~~~~~~~~~~~~----~~~~~~~~~~~~d~~i~i~d~~-~~~~-----~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d 218 (228)
.......++++ ++++.++++...++.|.+||.. +++. ...+ ..+. ..+..++++++|+++++...+
T Consensus 170 --~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~-~~~~~~~p~~i~~d~~G~l~v~~~~~ 246 (314)
T 1pjx_A 170 --AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI-PGTHEGGADGMDFDEDNNLLVANWGS 246 (314)
T ss_dssp --EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC-CCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred --CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC-CCCCCCCCCceEECCCCCEEEEEcCC
Confidence 22334567788 9988777776667999999976 3432 1222 2333 568889999999988888788
Q ss_pred CCEEEeee
Q 040370 219 RSVRFWKE 226 (228)
Q Consensus 219 g~i~vwd~ 226 (228)
+.|.+||.
T Consensus 247 ~~i~~~d~ 254 (314)
T 1pjx_A 247 SHIEVFGP 254 (314)
T ss_dssp TEEEEECT
T ss_pred CEEEEEcC
Confidence 89999985
No 200
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.66 E-value=1.8e-13 Score=103.23 Aligned_cols=196 Identities=8% Similarity=0.032 Sum_probs=137.6
Q ss_pred cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC--eEEEEeCCCC
Q 040370 20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG--AIRLWDGVSA 97 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~v~iwd~~~~ 97 (228)
.....++|+|+++++++...++.|++||.+++........ ..... ++|+|+++.|+++..++ .|.+++...+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-----~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-----FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG 204 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-----CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-----CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence 4678999999999888888889999999988776544332 12233 89999999988888766 7999998766
Q ss_pred ceeeEEe--cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe---cceeeeee-e-EEEECCCCcEEEE
Q 040370 98 NCVRSIV--GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL---GATHTQLR-F-QAVFNDTEEFVLS 170 (228)
Q Consensus 98 ~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~---~~~~~~~~-~-~~~~~~~~~~~~~ 170 (228)
.....+. .......+.+++++|++..|+.+..++.|+.||..++... .+. ........ . .++++|++..+++
T Consensus 205 ~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 205 WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIKQLELSGSLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-EEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEecccccCCCCCCccccEEEeCCCCEEEE
Confidence 5443331 0111456688999995555666777889999999876532 221 11011112 3 8899997677777
Q ss_pred eeCCCCeEEEEEcCCcceeEEeecCC---------------CCCcEEEEeCCCCcEEEEec-CCCCEEEee
Q 040370 171 IDEPSNEIVIWDALTAEKVAKWSSNH---------------IGAPRWIEHSPAEAAFITCG-TDRSVRFWK 225 (228)
Q Consensus 171 ~~~~d~~i~i~d~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd 225 (228)
+...++.|+.|+.... ...+ .++ ......++++|+|+++++-. .+++|+.|+
T Consensus 284 ~d~~~~~I~~~~~~g~--~~~~-~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~ 351 (409)
T 3hrp_A 284 SDQNLSSVYKITPDGE--CEWF-CGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLD 351 (409)
T ss_dssp EETTTTEEEEECTTCC--EEEE-EECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEE
T ss_pred EeCCCCEEEEEecCCC--EEEE-EeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEE
Confidence 7777899999997543 2222 122 23578999999999888887 889999998
No 201
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.65 E-value=8.6e-13 Score=95.40 Aligned_cols=192 Identities=9% Similarity=0.112 Sum_probs=124.3
Q ss_pred eecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec----------
Q 040370 16 IQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK---------- 85 (228)
Q Consensus 16 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------- 85 (228)
......+.+++++|+++++++ . ++.|.+||.++++...............++.++++|+|+++++...
T Consensus 50 ~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~ 127 (297)
T 3g4e_A 50 VTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLER 127 (297)
T ss_dssp EECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCT
T ss_pred EeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccC
Confidence 345678999999999995554 4 4679999998876543322211111345789999999996665432
Q ss_pred -CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEE-EeeCCCeEEEEEc--cCCeeE--EEEe-cceeeeeeeE
Q 040370 86 -DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVL-SCGKDSTVKLWEV--SSGRLV--KQYL-GATHTQLRFQ 158 (228)
Q Consensus 86 -dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~~wd~--~~~~~~--~~~~-~~~~~~~~~~ 158 (228)
.+.|..++.. ++... +... ......++|+|+++.|+ +.+.++.|.+||+ .++... ..+. ..........
T Consensus 128 ~~~~l~~~d~~-g~~~~-~~~~--~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g 203 (297)
T 3g4e_A 128 HQGALYSLFPD-HHVKK-YFDQ--VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDG 203 (297)
T ss_dssp TCEEEEEECTT-SCEEE-EEEE--ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEE
T ss_pred CCcEEEEEECC-CCEEE-Eeec--cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCe
Confidence 1344444432 33322 2221 33567899999998665 5556789999997 455432 1111 1112234567
Q ss_pred EEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeC-CCCcEEEEe
Q 040370 159 AVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHS-PAEAAFITC 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~ 215 (228)
+++.+++...++... ++.|..||..+++.+..+ ..+...+++++|. |+++.|+.+
T Consensus 204 ~~~d~~G~lwva~~~-~~~v~~~d~~tG~~~~~i-~~p~~~~t~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 204 MCIDAEGKLWVACYN-GGRVIRLDPVTGKRLQTV-KLPVDKTTSCCFGGKNYSEMYVT 259 (297)
T ss_dssp EEEBTTSCEEEEEET-TTEEEEECTTTCCEEEEE-ECSSSBEEEEEEESGGGCEEEEE
T ss_pred eEECCCCCEEEEEcC-CCEEEEEcCCCceEEEEE-ECCCCCceEEEEeCCCCCEEEEE
Confidence 888999976665544 588999999889888777 4455679999998 777655433
No 202
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.65 E-value=1e-12 Score=97.81 Aligned_cols=198 Identities=8% Similarity=-0.021 Sum_probs=126.0
Q ss_pred EEEEeCCCCEEEEec----------CCCeEEEEEcccceEEeeeccc-eee--eccceeeEEeCCCCCeEEEEec--CCe
Q 040370 24 SVSFHPSGDFLLAGT----------DHPIAHLYDVNTFQCYLSANVP-EIS--VNGAINQVRYSSTGGMYVTASK--DGA 88 (228)
Q Consensus 24 ~~~~~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~-~~~--~~~~i~~~~~~~~~~~l~~~~~--dg~ 88 (228)
.++++||+++++++. .++.|.++|..+.+........ ... .......+.|+|+|++|+++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 999999999999875 3678999999988776655432 100 0123457999999999998874 578
Q ss_pred EEEEeCCCCceeeE-EecccccceeEE--------E-------------------------------------EECCCCC
Q 040370 89 IRLWDGVSANCVRS-IVGAHGTAEATS--------A-------------------------------------NFTKDQR 122 (228)
Q Consensus 89 v~iwd~~~~~~~~~-~~~~~~~~~i~~--------~-------------------------------------~~~~~~~ 122 (228)
|.++| .+++.... +.... .+.. + .+.+++.
T Consensus 150 v~viD-~t~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 225 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSPT---CYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG 225 (373)
T ss_pred EEEEE-CCCCEEeEEcCCCc---eEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCC
Confidence 99999 99888777 54321 1000 0 1111111
Q ss_pred EEEEeeCCCeEEEEEccCCe--eEEEEecce--------eeeeeeEEEECCCCcEEEEeeC---------CCCeEEEEEc
Q 040370 123 FVLSCGKDSTVKLWEVSSGR--LVKQYLGAT--------HTQLRFQAVFNDTEEFVLSIDE---------PSNEIVIWDA 183 (228)
Q Consensus 123 ~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~---------~d~~i~i~d~ 183 (228)
.++..+.++.+.+.|+.... .+..+.... .+.....+.++|++..++++.. ..+.|.++|.
T Consensus 226 ~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~ 305 (373)
T 2mad_H 226 RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG 305 (373)
T ss_pred EEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC
Confidence 11111233445555553321 111111000 0111223667888888777643 1368999999
Q ss_pred CCcceeEEeecCCCCCcEEEEeCCCCc-EEEEec-CCCCEEEeeec
Q 040370 184 LTAEKVAKWSSNHIGAPRWIEHSPAEA-AFITCG-TDRSVRFWKEI 227 (228)
Q Consensus 184 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~dg~i~vwd~~ 227 (228)
.+++.+..+..+ ....+++|+||++ +++++. .++.|.++|+.
T Consensus 306 ~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 306 LVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred CCCEEEEEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 999998888433 3688999999999 787777 58999999963
No 203
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.64 E-value=2.3e-12 Score=92.92 Aligned_cols=200 Identities=9% Similarity=0.015 Sum_probs=141.7
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS 96 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 96 (228)
.....+.++++.++++..++...++.|.+|+.. ++... ..... . ...+..+++.++++++++...++.|..+|..
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~-~-~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~- 91 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPT-P-DAKVMCLIVSSLGDIWFTENGANKIGKLSKK- 91 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSS-T-TCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCC-C-CCcceeEEECCCCCEEEEecCCCeEEEECCC-
Confidence 345688999999999988877778999999988 55432 22111 1 3568899999999887777778899999987
Q ss_pred CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370 97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN 176 (228)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 176 (228)
++. ..+........+.++++.++++++++...++.|..+|.. ++.. .+...........+.+.+++...++ ...++
T Consensus 92 g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~-~~~~~ 167 (300)
T 2qc5_A 92 GGF-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNALWFT-ENQNN 167 (300)
T ss_dssp SCE-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSSEEEE-ETTTT
T ss_pred CCe-EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCCEEEE-ecCCC
Confidence 554 333322224568899999999888877778899999987 5544 2222212345677888898885554 44358
Q ss_pred eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 177 EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 177 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
.|..+|. +++........+...+..+++++++.+.++....+.|.+|+.
T Consensus 168 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 168 SIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT 216 (300)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred eEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence 8999998 555443222234567889999999988877777777888874
No 204
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.64 E-value=2.4e-12 Score=92.78 Aligned_cols=198 Identities=10% Similarity=0.024 Sum_probs=139.3
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN 98 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 98 (228)
...+.++++.+++...++...++.|..+|.. ++.. ...... . ...+.++++.++++++++...++.|..+|.. ++
T Consensus 61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~-~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 135 (300)
T 2qc5_A 61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQ-P-DSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT 135 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSS-T-TCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC
T ss_pred CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCC-C-CCCCccceECCCCCEEEEccCCCeEEEECCC-CC
Confidence 3678999999999888877778899999987 5542 222111 1 3568899999999988877778899999987 55
Q ss_pred eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeE
Q 040370 99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEI 178 (228)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 178 (228)
.. .+........+..+++.++++..++...++.|..+|. +++... +...........+.+.+++...++... .+.|
T Consensus 136 ~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~-~~~i 211 (300)
T 2qc5_A 136 IY-EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIM-GNKI 211 (300)
T ss_dssp EE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETT-TTEE
T ss_pred EE-EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccC-CCEE
Confidence 44 2222222456789999999997776666788999998 555443 322222345677888888876555433 5789
Q ss_pred EEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 179 VIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 179 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
.+||. +++........+...+.++++++++++.++...++.|..||.
T Consensus 212 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 212 GRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred EEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 99998 555443322345567899999999997777767788888874
No 205
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.64 E-value=1.1e-14 Score=117.04 Aligned_cols=196 Identities=9% Similarity=-0.055 Sum_probs=124.8
Q ss_pred EEEEEeCCCCEEEEecCCCe-------------EEEEEcccceE--EeeeccceeeeccceeeEEeCCCCCeEEEEecCC
Q 040370 23 RSVSFHPSGDFLLAGTDHPI-------------AHLYDVNTFQC--YLSANVPEISVNGAINQVRYSSTGGMYVTASKDG 87 (228)
Q Consensus 23 ~~~~~~~~~~~l~~~~~d~~-------------i~vw~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 87 (228)
..++|+|||+.|+.++.+.. |++|++.++.. ....... .+...+..+.|+|+|++|+.++.++
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~--~~~~~~~~~~~SpDG~~l~~~~~~~ 248 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT--GDPTTFLQSDLSRDGKYLFVYILRG 248 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC--CCTTCEEEEEECTTSCCEEEEEEET
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC--CCCEEEEEEEECCCCCEEEEEEeCC
Confidence 68999999999998887765 99999987652 1111111 1135678999999999998887666
Q ss_pred ----eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEee---CCCeEEEEEccCCee--EEEEecceeeeeeeE
Q 040370 88 ----AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCG---KDSTVKLWEVSSGRL--VKQYLGATHTQLRFQ 158 (228)
Q Consensus 88 ----~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~ 158 (228)
.|.++|..+++. ..+..+ ...+....+ +++.+++.+. .++.|.+||+.+++. ...+..+.....+..
T Consensus 249 ~~~~~l~~~~~~~~~~-~~l~~~--~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~ 324 (695)
T 2bkl_A 249 WSENDVYWKRPGEKDF-RLLVKG--VGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLS 324 (695)
T ss_dssp TTEEEEEEECTTCSSC-EEEEEC--SSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEE
T ss_pred CCceEEEEEcCCCCce-EEeecC--CCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEE
Confidence 677887655543 344433 223444555 5566444443 257899999987653 233332222334555
Q ss_pred EEECCCCcEEEEeeCCCCeEEEEEcC-CcceeEEeecCCCCCcEEEEeCCCCcEEE----EecCCCCEEEeee
Q 040370 159 AVFNDTEEFVLSIDEPSNEIVIWDAL-TAEKVAKWSSNHIGAPRWIEHSPAEAAFI----TCGTDRSVRFWKE 226 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----s~~~dg~i~vwd~ 226 (228)
+.++ ++. ++.+...|+..++|.+. +++....+.....+.+..+.++|+++.++ +....+.|.+||+
T Consensus 325 ~~~~-~~~-lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~ 395 (695)
T 2bkl_A 325 VSIV-GGH-LSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV 395 (695)
T ss_dssp EEEE-TTE-EEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred EEEE-CCE-EEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 6666 444 44445557888887654 35555544223366778889999887766 3334577888885
No 206
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.61 E-value=3.3e-12 Score=92.33 Aligned_cols=197 Identities=11% Similarity=0.088 Sum_probs=131.7
Q ss_pred CcceEEEEEeCC-CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC
Q 040370 19 THNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA 97 (228)
Q Consensus 19 ~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 97 (228)
..-.-+..|+|+ +.++++...++.|..||..+++... ... ...+.+++++|+++++++ . ++.|.+||.+++
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~-----~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-VTM-----DAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ 83 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EEC-----SSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-EeC-----CCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence 345568899995 4556677778999999998876422 211 467899999999995554 4 568999999877
Q ss_pred ceeeEEecc--cccceeEEEEECCCCCEEEEeeCC---------CeEEEEEccC-CeeEEEEecceeeeeeeEEEECCCC
Q 040370 98 NCVRSIVGA--HGTAEATSANFTKDQRFVLSCGKD---------STVKLWEVSS-GRLVKQYLGATHTQLRFQAVFNDTE 165 (228)
Q Consensus 98 ~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d---------~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (228)
+........ .....+..++++|+|+++++...+ ..-.+|.+.. ++... +.. .......++++|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~--~~~~pngi~~spdg 160 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFD--QVDISNGLDWSLDH 160 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEE--EESBEEEEEECTTS
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-Eee--ccccccceEEcCCC
Confidence 654333221 113457889999999976654321 2234554432 33322 221 23345678999999
Q ss_pred cEEEEeeCCCCeEEEEEc--CCccee--EEee--cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 166 EFVLSIDEPSNEIVIWDA--LTAEKV--AKWS--SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 166 ~~~~~~~~~d~~i~i~d~--~~~~~~--~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
+.++.+...++.|.+||+ .++... ..+. ..+.+.+..++++++|++.++...++.|..||.
T Consensus 161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~ 227 (297)
T 3g4e_A 161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDP 227 (297)
T ss_dssp CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECT
T ss_pred CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcC
Confidence 988877776799999987 445432 1111 223456789999999988888777788999885
No 207
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.61 E-value=5.2e-12 Score=92.50 Aligned_cols=192 Identities=8% Similarity=-0.013 Sum_probs=129.6
Q ss_pred ceEEEEEeCCC-CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce
Q 040370 21 NVRSVSFHPSG-DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC 99 (228)
Q Consensus 21 ~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 99 (228)
-..+..|+|++ ..+++...++.|..||.++++... ... ...+.+++|+|+++++++. .+ .|.+||..+++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~-----~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~ 121 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HAL-----PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL 121 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC-----SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EEC-----CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE
Confidence 45788999974 456677778999999998876432 211 4568999999999876654 44 499999988775
Q ss_pred eeEEecc--cccceeEEEEECCCCCEEEEeeC------CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370 100 VRSIVGA--HGTAEATSANFTKDQRFVLSCGK------DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI 171 (228)
Q Consensus 100 ~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
....... .....+..+.++|+|+++++... .+.|..+| +++... +.. .......++++|+++.++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~--~~~~~~~i~~s~dg~~lyv~ 196 (326)
T 2ghs_A 122 TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFA--DISIPNSICFSPDGTTGYFV 196 (326)
T ss_dssp EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEE--EESSEEEEEECTTSCEEEEE
T ss_pred EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeC--CCcccCCeEEcCCCCEEEEE
Confidence 4332211 11246889999999987665542 24566666 454332 221 22344578899999988777
Q ss_pred eCCCCeEEEEEcC--Cc-ce-----eEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 172 DEPSNEIVIWDAL--TA-EK-----VAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 172 ~~~d~~i~i~d~~--~~-~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
...++.|.+||.. ++ .. ...+ ......+..++++++|.+.++...++.|.+||.
T Consensus 197 ~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~-~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 197 DTKVNRLMRVPLDARTGLPTGKAEVFIDS-TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp ETTTCEEEEEEBCTTTCCBSSCCEEEEEC-TTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred ECCCCEEEEEEcccccCCcccCceEEEEC-CCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 7667899999986 55 31 1112 223456788999999988777766778888874
No 208
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.59 E-value=7.7e-12 Score=91.61 Aligned_cols=192 Identities=12% Similarity=0.075 Sum_probs=122.4
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec------CCeEE
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK------DGAIR 90 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~v~ 90 (228)
.....+.+++++|+++++++. .+ .|.+||.++++...............+..++++|+|+++++... .+.|.
T Consensus 87 ~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~ 164 (326)
T 2ghs_A 87 ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIY 164 (326)
T ss_dssp ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEE
T ss_pred ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEE
Confidence 345689999999999877755 44 48999998877543222111111246889999999987665542 24555
Q ss_pred EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEe-eCCCeEEEEEcc--CC-eeE--EEEe-cceeeeeeeEEEECC
Q 040370 91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC-GKDSTVKLWEVS--SG-RLV--KQYL-GATHTQLRFQAVFND 163 (228)
Q Consensus 91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~wd~~--~~-~~~--~~~~-~~~~~~~~~~~~~~~ 163 (228)
.++ +++... +... ......++|+|+++.++.+ +.++.|.+||+. ++ +.. ..+. ..........+.+.+
T Consensus 165 ~~~--~g~~~~-~~~~--~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~ 239 (326)
T 2ghs_A 165 HVA--KGKVTK-LFAD--ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA 239 (326)
T ss_dssp EEE--TTEEEE-EEEE--ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT
T ss_pred EEe--CCcEEE-eeCC--CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC
Confidence 566 444332 2221 3346789999999876554 457899999986 55 321 1121 111123445688888
Q ss_pred CCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeC-CCCcEEE-EecCC
Q 040370 164 TEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHS-PAEAAFI-TCGTD 218 (228)
Q Consensus 164 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~-s~~~d 218 (228)
++.+.++... ++.|.+||. +++....+ ..+...+.+++|+ |+++.|+ +...+
T Consensus 240 ~G~lwva~~~-~~~v~~~d~-~g~~~~~i-~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 240 EGHIWNARWG-EGAVDRYDT-DGNHIARY-EVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp TSCEEEEEET-TTEEEEECT-TCCEEEEE-ECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred CCCEEEEEeC-CCEEEEECC-CCCEEEEE-ECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 8877666544 588999998 56666655 3455679999998 8877654 44443
No 209
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.59 E-value=2.1e-13 Score=109.60 Aligned_cols=197 Identities=14% Similarity=0.122 Sum_probs=126.3
Q ss_pred cCcceEEEEEeCCCCEEEE-----ecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe----
Q 040370 18 DTHNVRSVSFHPSGDFLLA-----GTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA---- 88 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~-----~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~---- 88 (228)
|...+..++|||||++||- |+....|+++|+++++..... . . ......++|+ |++.|+.++.+..
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~---~-~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-L---K-DVKFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-E---E-EEESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-c---C-CceeccEEEe-CCCEEEEEEecCccccc
Confidence 3446888999999999984 344468999999998864431 1 1 1124678999 9999998887743
Q ss_pred ---------EEEEeCCCCce--eeEEeccc-ccceeEEEEECCCCCEEEEee----CCCeEEEEEccCCe-eEEEEecce
Q 040370 89 ---------IRLWDGVSANC--VRSIVGAH-GTAEATSANFTKDQRFVLSCG----KDSTVKLWEVSSGR-LVKQYLGAT 151 (228)
Q Consensus 89 ---------v~iwd~~~~~~--~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~----~d~~i~~wd~~~~~-~~~~~~~~~ 151 (228)
|++|++.++.. ...+.... +......+.|+||+++|+... .+..|+++|+.++. ....+...
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~- 279 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD- 279 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS-
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC-
Confidence 99999887653 22222221 133467899999999876443 23589999997763 33344332
Q ss_pred eeeeeeEEEECCCCcEEEEeeCC---CCeEEEEEcCCcce--eEEeecCCCCCcEEEEeCCCCcEEEEecC-CC--CEEE
Q 040370 152 HTQLRFQAVFNDTEEFVLSIDEP---SNEIVIWDALTAEK--VAKWSSNHIGAPRWIEHSPAEAAFITCGT-DR--SVRF 223 (228)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg--~i~v 223 (228)
....... +++++..++..... .+.|..+|+.++.. ...+ ..|...+. .|+++++.|+.... ++ .|.+
T Consensus 280 -~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~ 354 (693)
T 3iuj_A 280 -LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDL-IPERQQVL--TVHSGSGYLFAEYMVDATARVEQ 354 (693)
T ss_dssp -SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE-ECCCSSCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred -CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEE-ecCCCCEE--EEEEECCEEEEEEEECCeeEEEE
Confidence 2222222 44555555444433 36899999987654 2334 34555554 88898887776664 44 5777
Q ss_pred eee
Q 040370 224 WKE 226 (228)
Q Consensus 224 wd~ 226 (228)
|++
T Consensus 355 ~d~ 357 (693)
T 3iuj_A 355 FDY 357 (693)
T ss_dssp ECT
T ss_pred EEC
Confidence 764
No 210
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.58 E-value=6.5e-12 Score=91.12 Aligned_cols=196 Identities=9% Similarity=0.053 Sum_probs=129.4
Q ss_pred EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEE----Eec-----
Q 040370 15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVT----ASK----- 85 (228)
Q Consensus 15 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~----~~~----- 85 (228)
+..+...+..++++++|+++++...++.|.+|+.+ ++...............++.+++.|+|++.++ |..
T Consensus 81 ~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~ 159 (305)
T 3dr2_A 81 LLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQG 159 (305)
T ss_dssp EEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGS
T ss_pred EeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccc
Confidence 33456778999999999977776667889999986 54332221111111345788999999998876 332
Q ss_pred --------CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC------CeEEEEEccCCeeE--EEEec
Q 040370 86 --------DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD------STVKLWEVSSGRLV--KQYLG 149 (228)
Q Consensus 86 --------dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~--~~~~~ 149 (228)
.+.|..+|..+++..... . ......++|+|+++.|+.+... +.|++||+..+... ..+..
T Consensus 160 ~~~~~~~~~~~v~~~d~~~g~~~~~~-~---~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~ 235 (305)
T 3dr2_A 160 CPADPELAHHSVYRLPPDGSPLQRMA-D---LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS 235 (305)
T ss_dssp CCCCCSSSCEEEEEECSSSCCCEEEE-E---ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC
T ss_pred cccccccCCCeEEEEcCCCCcEEEEe-c---CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE
Confidence 256888888767654433 2 3456789999999988777665 68999998765411 11111
Q ss_pred ceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEE
Q 040370 150 ATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVR 222 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 222 (228)
. .......+.+.+++...++ .. +.|.+|+. .++.+..+. ... .+.+++|+|+++.|+.++.++..+
T Consensus 236 ~-~~~~pdgi~~d~~G~lwv~-~~--~gv~~~~~-~g~~~~~~~-~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 236 V-PDGLPDGFCVDRGGWLWSS-SG--TGVCVFDS-DGQLLGHIP-TPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp C-SSSCCCSEEECTTSCEEEC-CS--SEEEEECT-TSCEEEEEE-CSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred C-CCCCCCeEEECCCCCEEEe-cC--CcEEEECC-CCCEEEEEE-CCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 0 1223346778888885444 33 45999997 566666663 233 588999999988888777665333
No 211
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.57 E-value=5.9e-12 Score=94.09 Aligned_cols=194 Identities=13% Similarity=0.104 Sum_probs=134.5
Q ss_pred ceEEEEEeCCCCEEEEecCC------CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe----------
Q 040370 21 NVRSVSFHPSGDFLLAGTDH------PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS---------- 84 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---------- 84 (228)
.-..+...|+| .++++..+ +.|.+.|.++++.+......... ...-..+.|+|+++.+++..
T Consensus 139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~-~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g 216 (462)
T 2ece_A 139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGD-QYLAYDFWWNLPNEVLVSSEWAVPNTIEDG 216 (462)
T ss_dssp EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTT-CCCCCCEEEETTTTEEEECBCCCHHHHTTC
T ss_pred cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCC-ccccceEEECCCCCEEEEccCcCccccccc
Confidence 44567788999 66655444 78999999999888776643211 22345688999999888874
Q ss_pred ---------cCCeEEEEeCCCCceeeEEecccccceeEEEEE--CCCCCEEEEeeC------CCeEEEEEccCCeeE--E
Q 040370 85 ---------KDGAIRLWDGVSANCVRSIVGAHGTAEATSANF--TKDQRFVLSCGK------DSTVKLWEVSSGRLV--K 145 (228)
Q Consensus 85 ---------~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~------d~~i~~wd~~~~~~~--~ 145 (228)
.+..|.+||+.+++...++...........+.| +|++++++.++. +++|.+|....++.. .
T Consensus 217 ~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~ 296 (462)
T 2ece_A 217 LKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK 296 (462)
T ss_dssp CCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred cchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence 368999999999888888776422234445555 999998887774 568888776554321 1
Q ss_pred EEeccee----------------eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCc---ceeEEeecCCC---------
Q 040370 146 QYLGATH----------------TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA---EKVAKWSSNHI--------- 197 (228)
Q Consensus 146 ~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~--------- 197 (228)
.+..... ......+.+++++++++++....+.|.+||+... +.+..+..+..
T Consensus 297 vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G 376 (462)
T 2ece_A 297 VIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAG 376 (462)
T ss_dssp EEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTS
T ss_pred EEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccc
Confidence 1110000 2346788899999999999988899999998632 34444433311
Q ss_pred ----CCcEEEEeCCCCcEEEEec
Q 040370 198 ----GAPRWIEHSPAEAAFITCG 216 (228)
Q Consensus 198 ----~~v~~~~~~~~~~~l~s~~ 216 (228)
+....++++|+|++|+.+.
T Consensus 377 ~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 377 HKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCSCCCCEEECTTSSEEEEEC
T ss_pred ccCCCCCCEEEEcCCCCEEEEEc
Confidence 1367899999999998887
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.56 E-value=8.1e-12 Score=94.22 Aligned_cols=197 Identities=10% Similarity=0.008 Sum_probs=130.5
Q ss_pred EEEeCCCCEEEEecCCC--eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeE
Q 040370 25 VSFHPSGDFLLAGTDHP--IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRS 102 (228)
Q Consensus 25 ~~~~~~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 102 (228)
++|+|+++.|+++..++ .|.+++...+................+.+++++|++..|+.+..++.|+.||..++.....
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 89999999988887765 7888888765432222100000145678899999555566677789999999987653222
Q ss_pred ----EecccccceeEEEEECCC-CCEEEEeeCCCeEEEEEccCCeeEEEEecce-------------eeeeeeEEEECCC
Q 040370 103 ----IVGAHGTAEATSANFTKD-QRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT-------------HTQLRFQAVFNDT 164 (228)
Q Consensus 103 ----~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~ 164 (228)
........+...++|+|+ +.++++-..++.|+.||.... ...+.+.. .-.....++++++
T Consensus 256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d 333 (409)
T 3hrp_A 256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED 333 (409)
T ss_dssp EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT
T ss_pred ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC
Confidence 111110111128999995 566666667889999997643 22332211 0123567899999
Q ss_pred CcEEEEeeC-CCCeEEEEEcCCcceeEEeecCC---------------CCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 165 EEFVLSIDE-PSNEIVIWDALTAEKVAKWSSNH---------------IGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 165 ~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
+. ++++.. .++.|+.||+.++...... ++ ......+++++++.++++-..+++|+.+++
T Consensus 334 G~-lyvad~~~~~~I~~~~~~~G~v~~~~--g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 334 GN-FYIVDGFKGYCLRKLDILDGYVSTVA--GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CC-EEEEETTTTCEEEEEETTTTEEEEEE--ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CC-EEEEeCCCCCEEEEEECCCCEEEEEe--CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 98 445555 6799999998777643322 22 245889999999998888888899988775
No 213
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.56 E-value=4.1e-13 Score=108.68 Aligned_cols=196 Identities=11% Similarity=-0.003 Sum_probs=123.1
Q ss_pred eEEEEEeCCCCEEEEecCCCe--------------EEEEEcccceE--EeeeccceeeeccceeeEEeCCCCCeEEEEec
Q 040370 22 VRSVSFHPSGDFLLAGTDHPI--------------AHLYDVNTFQC--YLSANVPEISVNGAINQVRYSSTGGMYVTASK 85 (228)
Q Consensus 22 v~~~~~~~~~~~l~~~~~d~~--------------i~vw~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 85 (228)
+..++|+|| +.|+.++.++. |++|++.++.. ....... .+ ...+..+.|+|+|++|+..+.
T Consensus 211 ~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~-~~-~~~~~~~~~SpDG~~l~~~~~ 287 (741)
T 1yr2_A 211 FSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATP-EL-PKRGHGASVSSDGRWVVITSS 287 (741)
T ss_dssp SCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCT-TC-TTCEEEEEECTTSCEEEEEEE
T ss_pred eccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccC-CC-CeEEEEEEECCCCCEEEEEEE
Confidence 357899999 98888776543 88999876542 1111111 01 234788999999998887775
Q ss_pred CC-----eEEEEeCCCC--ceeeEEecccccceeEEEEECCCCCEEEEeeCC----CeEEEEEccCCe-eEEEEecceee
Q 040370 86 DG-----AIRLWDGVSA--NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD----STVKLWEVSSGR-LVKQYLGATHT 153 (228)
Q Consensus 86 dg-----~v~iwd~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~~wd~~~~~-~~~~~~~~~~~ 153 (228)
++ .|.+||+.++ +....+..+. ...... ++|+++.|+..+.+ +.|.+||+.++. ....+... +.
T Consensus 288 ~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~ 363 (741)
T 1yr2_A 288 EGTDPVNTVHVARVTNGKIGPVTALIPDL--KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE-SK 363 (741)
T ss_dssp CTTCSCCEEEEEEEETTEECCCEEEECSS--SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC-CS
T ss_pred ccCCCcceEEEEECCCCCCcccEEecCCC--CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC-CC
Confidence 54 8999999877 3144554432 223333 34888888877653 459999998752 33333322 23
Q ss_pred eeeeEEEECCCCcEEEEeeCCCCeEEEEEcC-CcceeEEeecCCCCCcEEEEeCCCCcEEEE----ecCCCCEEEeee
Q 040370 154 QLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL-TAEKVAKWSSNHIGAPRWIEHSPAEAAFIT----CGTDRSVRFWKE 226 (228)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s----~~~dg~i~vwd~ 226 (228)
..+..+.+. +..++.+...|+..++|.+. +++....+...+.+.+..+.++|+++.|+. ....+.|.+||+
T Consensus 364 ~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 364 DNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp SEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred CeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 334455555 44555555557877777554 455555553334677889999998876652 234577888885
No 214
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.55 E-value=1.6e-11 Score=86.34 Aligned_cols=205 Identities=7% Similarity=-0.056 Sum_probs=139.4
Q ss_pred eeEEEeecCcc--eEEEEEeCCCCEEEEecC--CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEec
Q 040370 11 RAFRVIQDTHN--VRSVSFHPSGDFLLAGTD--HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASK 85 (228)
Q Consensus 11 ~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~ 85 (228)
+....+.|... ...++|+|++.++++.+. ++.|.++|+.+++.+....... ......+++. ++.++ +.-.
T Consensus 10 ~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~---~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 10 EVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD---SYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT---TCCEEEEEEE--TTEEEEEETT
T ss_pred eEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC---CcceEEEEEe--CCEEEEEEec
Confidence 34455567643 689999998654444443 6899999999999877665422 1122344554 44444 4456
Q ss_pred CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeee---eeeEEEEC
Q 040370 86 DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQ---LRFQAVFN 162 (228)
Q Consensus 86 dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~---~~~~~~~~ 162 (228)
++.+.++|..+.+.+..+... .. .- ..+++|++.++.+..++.|.++|..+.+.+..+....... ....+.+.
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g-~~-~g--~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~ 160 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQ-MK-DG--WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI 160 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECC-SS-SC--CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred CCEEEEEECCCCcEEEEEECC-CC-Ce--EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence 889999999999998888653 11 11 2345577777777778899999999988887776432111 23455565
Q ss_pred CCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCC------------CCCcEEEEeCCCCc-EEEEecCCCCEEEeee
Q 040370 163 DTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNH------------IGAPRWIEHSPAEA-AFITCGTDRSVRFWKE 226 (228)
Q Consensus 163 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~ 226 (228)
++ .+++....++.|.+.|..+++....+..+. ....+.|+|+|+++ +++++...+.+.+-++
T Consensus 161 -dg-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 161 -NG-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp -TT-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred -CC-EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 55 555656557999999999999888874320 13568999999875 5666667787777665
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.54 E-value=1.2e-12 Score=97.23 Aligned_cols=140 Identities=14% Similarity=0.151 Sum_probs=107.2
Q ss_pred eecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC
Q 040370 16 IQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV 95 (228)
Q Consensus 16 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~ 95 (228)
..+.. |+.++| ++++|+++ .++.|++||+.+........ .+...+.++.+.+.. +++++.||.|.+||+.
T Consensus 85 ~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~----~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~ 154 (388)
T 1xip_A 85 KEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVT----SFEKPVFQLKNVNNT--LVILNSVNDLSALDLR 154 (388)
T ss_dssp EECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEE----ECSSCEEEEEECSSE--EEEEETTSEEEEEETT
T ss_pred eeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccc----eeecceeeEEecCCC--EEEEECCCCEEEEEcc
Confidence 35677 999999 89999999 78999999998765333222 125567787776543 8889999999999999
Q ss_pred CCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee--EEEEec----c---eeeeeeeEEEECCCCc
Q 040370 96 SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL--VKQYLG----A---THTQLRFQAVFNDTEE 166 (228)
Q Consensus 96 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~----~---~~~~~~~~~~~~~~~~ 166 (228)
+++... . ...|++++|+|+| ++.|..||.+++|+...++. ...+.. . .+...+..+.|.+++.
T Consensus 155 ~~~~~~----~--~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~ 226 (388)
T 1xip_A 155 TKSTKQ----L--AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD 226 (388)
T ss_dssp TCCEEE----E--EESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE
T ss_pred CCcccc----c--cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCe
Confidence 877643 1 4579999999999 67899999999999987764 445521 1 1457789999999999
Q ss_pred EEEEeeC
Q 040370 167 FVLSIDE 173 (228)
Q Consensus 167 ~~~~~~~ 173 (228)
++++-..
T Consensus 227 flv~y~~ 233 (388)
T 1xip_A 227 FLAVFGN 233 (388)
T ss_dssp EEEEEEC
T ss_pred EEEEEcC
Confidence 8887443
No 216
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.54 E-value=2.9e-11 Score=87.67 Aligned_cols=202 Identities=8% Similarity=-0.028 Sum_probs=131.3
Q ss_pred eEEEeecCcceEEEEEeCCCC-EEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEE
Q 040370 12 AFRVIQDTHNVRSVSFHPSGD-FLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIR 90 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 90 (228)
..++...........|+|+++ +++++..++.|..|+.. ++. ..+... ...+..++++++|+++++...++.|.
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~~~~----~~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVLLDA----TAFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEEEES----CSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEEeCC----CCccceeeECCCCCEEEEECCCCEEE
Confidence 344445566778999999998 56677788999999984 442 222211 45688999999999766666668899
Q ss_pred EEeCCCCceeeEEeccc--ccceeEEEEECCCCCEEEE----eeC-------------CCeEEEEEccCCeeEEEEecce
Q 040370 91 LWDGVSANCVRSIVGAH--GTAEATSANFTKDQRFVLS----CGK-------------DSTVKLWEVSSGRLVKQYLGAT 151 (228)
Q Consensus 91 iwd~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~----~~~-------------d~~i~~wd~~~~~~~~~~~~~~ 151 (228)
+|+.. ++......... ....+..++++|+|++.++ |.. .+.|..+|..+++.....
T Consensus 111 ~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---- 185 (305)
T 3dr2_A 111 RSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---- 185 (305)
T ss_dssp EECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE----
T ss_pred EECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe----
Confidence 99986 54322221111 1124567999999998886 332 256888887666543322
Q ss_pred eeeeeeEEEECCCCcEEEEeeCC-----CCeEEEEEcCCccee--EEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370 152 HTQLRFQAVFNDTEEFVLSIDEP-----SNEIVIWDALTAEKV--AKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224 (228)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 224 (228)
.......++++|+++.++++... ++.|.+|++..+... ..+.....+.+..++++++|++.++ ..+| |.+|
T Consensus 186 ~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~g-v~~~ 263 (305)
T 3dr2_A 186 DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGTG-VCVF 263 (305)
T ss_dssp EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSSE-EEEE
T ss_pred cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCCc-EEEE
Confidence 12234568899999988777663 278999998754311 1121223445667899999985554 4444 8887
Q ss_pred ee
Q 040370 225 KE 226 (228)
Q Consensus 225 d~ 226 (228)
+.
T Consensus 264 ~~ 265 (305)
T 3dr2_A 264 DS 265 (305)
T ss_dssp CT
T ss_pred CC
Confidence 64
No 217
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.53 E-value=4.4e-12 Score=95.34 Aligned_cols=202 Identities=10% Similarity=0.030 Sum_probs=132.0
Q ss_pred EEEEeCCCCEEEEec----------CCCeEEEEEcccceEEeeeccc-eee--eccceeeEEeCCCCCeEEEEec--CCe
Q 040370 24 SVSFHPSGDFLLAGT----------DHPIAHLYDVNTFQCYLSANVP-EIS--VNGAINQVRYSSTGGMYVTASK--DGA 88 (228)
Q Consensus 24 ~~~~~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~-~~~--~~~~i~~~~~~~~~~~l~~~~~--dg~ 88 (228)
.++++||+++++++. .++.|.++|..+++.+..+... ... .......+.|+|+|++++.+.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 899999999988876 4678999999999877766542 000 0124567899999999998874 578
Q ss_pred EEEEeCCCCceeeEEecccc-----cceeEEEEE-------------------------------------CCCCCEEEE
Q 040370 89 IRLWDGVSANCVRSIVGAHG-----TAEATSANF-------------------------------------TKDQRFVLS 126 (228)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~-----~~~i~~~~~-------------------------------------~~~~~~l~~ 126 (228)
|.+.|+.+++.+..+..... ...-..+.+ .+++..++.
T Consensus 202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~ 281 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW 281 (426)
T ss_dssp EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE
Confidence 99999999988877765210 000001223 333333333
Q ss_pred eeCCCeEEEEEccCCeeE--EEEecc--------eeeeeeeEEEECCCCcEEEEeeC---------CCCeEEEEEcCCcc
Q 040370 127 CGKDSTVKLWEVSSGRLV--KQYLGA--------THTQLRFQAVFNDTEEFVLSIDE---------PSNEIVIWDALTAE 187 (228)
Q Consensus 127 ~~~d~~i~~wd~~~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~---------~d~~i~i~d~~~~~ 187 (228)
.+..+.+.+.|+...... ..+... ........+.++|++..++++.. ..+.|.++|..+.+
T Consensus 282 ~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k 361 (426)
T 3c75_H 282 PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE 361 (426)
T ss_dssp EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe
Confidence 334455566665433211 111100 00111123578888887777642 13579999999999
Q ss_pred eeEEeecCCCCCcEEEEeCCCCc-EEEEec-CCCCEEEeeec
Q 040370 188 KVAKWSSNHIGAPRWIEHSPAEA-AFITCG-TDRSVRFWKEI 227 (228)
Q Consensus 188 ~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~dg~i~vwd~~ 227 (228)
.+.++..+. ....+.|+|+++ +++++. .++.|.++|+.
T Consensus 362 vv~~I~vg~--~P~gia~spDg~~~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 362 RINKIELGH--EIDSINVSQDAEPLLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp EEEEEEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred EEEEEECCC--CcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence 998885433 588999999998 888877 59999999963
No 218
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.51 E-value=7.8e-12 Score=92.53 Aligned_cols=201 Identities=15% Similarity=0.150 Sum_probs=129.8
Q ss_pred EEEEeCCCCEEEEec----------CCCeEEEEEcccceEEeeeccceee---eccceeeEEeCCCCCeEEEEec--CCe
Q 040370 24 SVSFHPSGDFLLAGT----------DHPIAHLYDVNTFQCYLSANVPEIS---VNGAINQVRYSSTGGMYVTASK--DGA 88 (228)
Q Consensus 24 ~~~~~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~--dg~ 88 (228)
.++++|++++++++. .++.|.+||..+.+.........+. .......+.|+|+|++++.+.. ++.
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence 399999999988775 3678999999999887766543210 0124677999999999888864 689
Q ss_pred EEEEeCCCCceeeEEeccc---------------------------ccceeEE----------------EEEC-CCCCEE
Q 040370 89 IRLWDGVSANCVRSIVGAH---------------------------GTAEATS----------------ANFT-KDQRFV 124 (228)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~---------------------------~~~~i~~----------------~~~~-~~~~~l 124 (228)
|.++|+.+++.+.++.... ....+.. ..|. ++|+++
T Consensus 162 VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~ 241 (386)
T 3sjl_D 162 VGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLV 241 (386)
T ss_dssp EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred EEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEE
Confidence 9999999988777664311 0001100 0111 233222
Q ss_pred EEeeCCCeEEEEEccCCe--eEEEEe--------cceeeeeeeEEEECCCCcEEEEeeC---------CCCeEEEEEcCC
Q 040370 125 LSCGKDSTVKLWEVSSGR--LVKQYL--------GATHTQLRFQAVFNDTEEFVLSIDE---------PSNEIVIWDALT 185 (228)
Q Consensus 125 ~~~~~d~~i~~wd~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~---------~d~~i~i~d~~~ 185 (228)
+ .+.+|.|++.|+.+.. ....+. ..........+.+++++..+++... ..+.|.++|.++
T Consensus 242 ~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t 320 (386)
T 3sjl_D 242 W-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT 320 (386)
T ss_dssp E-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred E-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC
Confidence 2 3345666666664432 222221 0001222234666788887777542 125799999999
Q ss_pred cceeEEeecCCCCCcEEEEeCCCCc-EEEE-ecCCCCEEEeeec
Q 040370 186 AEKVAKWSSNHIGAPRWIEHSPAEA-AFIT-CGTDRSVRFWKEI 227 (228)
Q Consensus 186 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s-~~~dg~i~vwd~~ 227 (228)
++.+..+..++ .+.+++++|+++ +|++ ...++.|.++|..
T Consensus 321 ~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 321 GERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp CCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred CeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 99999885543 688999999986 6655 4568999999863
No 219
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.50 E-value=5.3e-12 Score=93.11 Aligned_cols=201 Identities=9% Similarity=0.076 Sum_probs=128.0
Q ss_pred cCcceEEEEEeCCCCEEEEecC-----CCeEEEEEcccceEEeeeccce--eeeccceeeEEeCCCCCe-EEEEe---cC
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTD-----HPIAHLYDVNTFQCYLSANVPE--ISVNGAINQVRYSSTGGM-YVTAS---KD 86 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~-----d~~i~vw~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~-l~~~~---~d 86 (228)
+-..+..++++++++++++-.. ++.|.+||+.+++....+..+. ..+...+..++++|++.. +++-. .+
T Consensus 65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence 4467999999999876665433 5789999999888655544321 111345689999986444 45554 67
Q ss_pred CeEEEEeCCCCceeeEEecccc---------------------------cceeEEEEECCCCCEEEEeeCCC-eEEEEEc
Q 040370 87 GAIRLWDGVSANCVRSIVGAHG---------------------------TAEATSANFTKDQRFVLSCGKDS-TVKLWEV 138 (228)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~~~---------------------------~~~i~~~~~~~~~~~l~~~~~d~-~i~~wd~ 138 (228)
+.|.+||+.+++..+.+..+.. ...+..++|+|+++.|+.+..++ .+..++.
T Consensus 145 ~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~ 224 (343)
T 2qe8_A 145 AALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKS 224 (343)
T ss_dssp CEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred CeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence 8999999988776554422100 02358899999999888877665 5555553
Q ss_pred cC---Ce-----eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc
Q 040370 139 SS---GR-----LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA 210 (228)
Q Consensus 139 ~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (228)
.. +. ....+....+......+++++++...++ ...++.|.+||..+++........+...+.+++|.+++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va-~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~ 303 (343)
T 2qe8_A 225 ADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVG-DLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGY 303 (343)
T ss_dssp HHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEE-EGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSC
T ss_pred HHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEE-ccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCc
Confidence 21 10 0000000001223456888888876555 444699999998566543332122345689999999998
Q ss_pred EEEEecCCC
Q 040370 211 AFITCGTDR 219 (228)
Q Consensus 211 ~l~s~~~dg 219 (228)
++++.+..+
T Consensus 304 l~v~~~~~~ 312 (343)
T 2qe8_A 304 LYFDCNQLH 312 (343)
T ss_dssp EEEEECCGG
T ss_pred EEEEeCccc
Confidence 888877543
No 220
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.49 E-value=5e-11 Score=89.16 Aligned_cols=197 Identities=13% Similarity=0.110 Sum_probs=135.1
Q ss_pred CCCCEEEE-ecCCCeEEEEEcccc----eEEeeecccee---eeccceeeEEeCCCCCeEEEEecC------CeEEEEeC
Q 040370 29 PSGDFLLA-GTDHPIAHLYDVNTF----QCYLSANVPEI---SVNGAINQVRYSSTGGMYVTASKD------GAIRLWDG 94 (228)
Q Consensus 29 ~~~~~l~~-~~~d~~i~vw~~~~~----~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d------g~v~iwd~ 94 (228)
+++++|++ +..++.|.++|+.+. +........+. .-......+...|+| .++++..+ |.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77777764 667889999999754 44444320000 001245667888999 77776665 78999999
Q ss_pred CCCceeeEEeccccc-ceeEEEEECCCCCEEEEee-------------------CCCeEEEEEccCCeeEEEEecceeee
Q 040370 95 VSANCVRSIVGAHGT-AEATSANFTKDQRFVLSCG-------------------KDSTVKLWEVSSGRLVKQYLGATHTQ 154 (228)
Q Consensus 95 ~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~-------------------~d~~i~~wd~~~~~~~~~~~~~~~~~ 154 (228)
++++.+..+...... ..-..+.|+|+++.+++.. .+.+|.+||+.+++.+.++.......
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 999999888743212 2234588899999888884 36899999999988888776532223
Q ss_pred eeeEE--EECCCCcEEEEeeC-----CCCeEEEEEcCCcceeEE----eec----C-----------CCCCcEEEEeCCC
Q 040370 155 LRFQA--VFNDTEEFVLSIDE-----PSNEIVIWDALTAEKVAK----WSS----N-----------HIGAPRWIEHSPA 208 (228)
Q Consensus 155 ~~~~~--~~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~----~~~----~-----------~~~~v~~~~~~~~ 208 (228)
....+ .++|++++.++++. .+++|.+|....++.... +.. . -......|.++||
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 33344 45999999999887 788998877654321111 100 0 0245788999999
Q ss_pred CcEEEEecC-CCCEEEeee
Q 040370 209 EAAFITCGT-DRSVRFWKE 226 (228)
Q Consensus 209 ~~~l~s~~~-dg~i~vwd~ 226 (228)
+++|..+.. .+.|.+||+
T Consensus 332 GrfLYVSnrg~d~VavfdV 350 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDI 350 (462)
T ss_dssp SCEEEEEETTTTEEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEe
Confidence 998877664 688999986
No 221
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.48 E-value=7.2e-15 Score=109.41 Aligned_cols=179 Identities=10% Similarity=0.001 Sum_probs=99.7
Q ss_pred CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEeccccc
Q 040370 30 SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGT 109 (228)
Q Consensus 30 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 109 (228)
++..+++++.|+.|+.||..+|+.+..... +.+.+..+.+++..+++++.||.|+.||.++++.+..+..+. .
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~-~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI-P 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCH-H
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccC-c
Confidence 678899999999999999999998776653 234444455677788888899999999999988766654321 1
Q ss_pred ceeE-EEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcce
Q 040370 110 AEAT-SANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK 188 (228)
Q Consensus 110 ~~i~-~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 188 (228)
..+. +..+. .+..+++++.|+.++.||.++|+.+..+.... ...++|++..+++++. |+.|+.||.++++.
T Consensus 81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~------~~~~~p~~~~v~~~~~-dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF------ADSLSPSTSLLYLGRT-EYTITMYDTKTREL 152 (369)
T ss_dssp HHHTTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEE-EEEEECCCSSSSSC
T ss_pred cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC------cccccccCCEEEEEec-CCEEEEEECCCCCE
Confidence 1111 01111 34568888899999999999999887765421 1234456777776555 79999999999987
Q ss_pred eEEeecCCCCCcEEEEeCCCC---cEEEEecCCCCEEEeee
Q 040370 189 VAKWSSNHIGAPRWIEHSPAE---AAFITCGTDRSVRFWKE 226 (228)
Q Consensus 189 ~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~dg~i~vwd~ 226 (228)
...+... ......+.++. ..+++++.||.|..||.
T Consensus 153 ~W~~~~~---~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~ 190 (369)
T 2hz6_A 153 RWNATYF---DYAASLPEDDVDYKMSHFVSNGDGLVVTVDS 190 (369)
T ss_dssp CCEEEEE---EECCBCCCCCTTCCCCEEEEETSCEEEEECT
T ss_pred EEeEecc---cccCccccCCccccceEEEECCCCEEEEEEC
Confidence 6554211 11222333322 45677788899988885
No 222
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.48 E-value=1.6e-10 Score=80.51 Aligned_cols=193 Identities=13% Similarity=0.075 Sum_probs=130.6
Q ss_pred eEEEeecCcce--EEEEEeCCCCEEEEecCCC--eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEE-ecC
Q 040370 12 AFRVIQDTHNV--RSVSFHPSGDFLLAGTDHP--IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTA-SKD 86 (228)
Q Consensus 12 ~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d 86 (228)
+.+...|...- ..+.|+ ++.++.+.+.+| .|+++|+++++........ .........++++.+... -.+
T Consensus 33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-----~~~FgeGit~~g~~ly~ltw~~ 106 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-----KRYFGEGISDWKDKIVGLTWKN 106 (262)
T ss_dssp EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-----TTCCEEEEEEETTEEEEEESSS
T ss_pred EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-----CccceeEEEEeCCEEEEEEeeC
Confidence 44555676544 889998 666666666665 8999999999987776543 223222222234445544 458
Q ss_pred CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeee---eeEEEECC
Q 040370 87 GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQL---RFQAVFND 163 (228)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~---~~~~~~~~ 163 (228)
+.+.++|..+.+.+.++.... .-..++ ++++.|+.+..++.|.++|..+.+.+..+........ ...+.+.
T Consensus 107 ~~v~v~D~~t~~~~~ti~~~~---eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~- 180 (262)
T 3nol_A 107 GLGFVWNIRNLRQVRSFNYDG---EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV- 180 (262)
T ss_dssp SEEEEEETTTCCEEEEEECSS---CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-
T ss_pred CEEEEEECccCcEEEEEECCC---CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-
Confidence 899999999999999988742 213333 5677777776678899999999888887764322222 2234454
Q ss_pred CCcEEEEeeCCCCeEEEEEcCCcceeEEeecC-----------CCCCcEEEEeCCCCcEEEEecC
Q 040370 164 TEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN-----------HIGAPRWIEHSPAEAAFITCGT 217 (228)
Q Consensus 164 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~s~~~ 217 (228)
++. +.+....++.|.+.|.++++....+... ...-.+.|+++|+++.|+..|.
T Consensus 181 ~G~-lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 181 DGE-IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TTE-EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCE-EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 454 5565656789999999999998877431 0134688999998776666653
No 223
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.47 E-value=1.1e-10 Score=86.97 Aligned_cols=187 Identities=9% Similarity=-0.081 Sum_probs=122.1
Q ss_pred EEeCCCCEEEEecC--CC---eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe----------cCCeEE
Q 040370 26 SFHPSGDFLLAGTD--HP---IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS----------KDGAIR 90 (228)
Q Consensus 26 ~~~~~~~~l~~~~~--d~---~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~v~ 90 (228)
...|+++++++... .. .|.++|..+++.+..+... .. - .++++|++++++.+. .++.|.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g----~~-p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~ 100 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG----FL-P-NPVAAHSGSEFALASTSFSRIAKGKRTDYVE 100 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC----CC-C-CeEECCCCCEEEEEeccccccccCCCCCeEE
Confidence 34468887777653 22 8899999998876554431 22 2 899999999988886 367899
Q ss_pred EEeCCCCceeeEEecc-cc----cceeEEEEECCCCCEEEEeeC--CCeEEEEEccCCeeEEE-EecceeeeeeeEEEEC
Q 040370 91 LWDGVSANCVRSIVGA-HG----TAEATSANFTKDQRFVLSCGK--DSTVKLWEVSSGRLVKQ-YLGATHTQLRFQAVFN 162 (228)
Q Consensus 91 iwd~~~~~~~~~~~~~-~~----~~~i~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~ 162 (228)
++|..+.+.+..+... .. ......+.++||+++|+.+.. ++.|.++| .+++.+.. +... . ++.+.
T Consensus 101 viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~---~---~~~~~ 173 (373)
T 2mad_H 101 VFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP---T---CYHIH 173 (373)
T ss_pred EEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC---c---eEEEE
Confidence 9999988887776542 00 123457899999999998874 47899999 99888776 5431 1 13344
Q ss_pred CCCcEEEEeeCCCCeEEEEEcCCcceeEEeec----CCCCCc-EEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 163 DTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS----NHIGAP-RWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 163 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~v-~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
|.+...+.+...||.+.++|. +++....... ....++ ....+.+++..++..+.++.+.+.|+
T Consensus 174 ~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~ 241 (373)
T 2mad_H 174 PGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADI 241 (373)
T ss_pred eCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEec
Confidence 555444444556899999999 7776633210 111121 22345555444433345666766664
No 224
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.47 E-value=5.3e-11 Score=87.78 Aligned_cols=205 Identities=9% Similarity=0.067 Sum_probs=134.5
Q ss_pred cceEEEEEeCCCCEEEEec--CCCeEEEEEcccceEEeeecc---ceeeeccceeeEEeCCCCCeEEEEec-----CCeE
Q 040370 20 HNVRSVSFHPSGDFLLAGT--DHPIAHLYDVNTFQCYLSANV---PEISVNGAINQVRYSSTGGMYVTASK-----DGAI 89 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~--~d~~i~vw~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~v 89 (228)
..+..++++|+|+.+++.. .++.++||.+.+++.. .+.. ....+...+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6899999999999988853 2343556666555432 1110 00111457899999999886665543 5789
Q ss_pred EEEeCCCCceeeEEeccc----ccceeEEEEECCCCCEE-EEee---CCCeEEEEEccCCeeEEEEecce----------
Q 040370 90 RLWDGVSANCVRSIVGAH----GTAEATSANFTKDQRFV-LSCG---KDSTVKLWEVSSGRLVKQYLGAT---------- 151 (228)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l-~~~~---~d~~i~~wd~~~~~~~~~~~~~~---------- 151 (228)
.+||+.+++.+..+.... ....+..+++++++..+ ++.. .++.|.+||+.+++....+..+.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 999999998777665421 12346889999865444 5544 57899999998877655442210
Q ss_pred -----------------eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC---cc-----eeE--EeecCCCCCcEEEE
Q 040370 152 -----------------HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT---AE-----KVA--KWSSNHIGAPRWIE 204 (228)
Q Consensus 152 -----------------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~---~~-----~~~--~~~~~~~~~v~~~~ 204 (228)
.......++++|+++.++.+......+..++... +. ... .. .++.+....++
T Consensus 176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~g~~g~pdgia 254 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIER-YSEKPICDGIS 254 (343)
T ss_dssp ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEE-EEECCSCSCEE
T ss_pred ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEe-cccCCCCceEE
Confidence 0012466889999988888776545666665421 11 000 11 13344667899
Q ss_pred eCCCCcEEEEecCCCCEEEeee
Q 040370 205 HSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 205 ~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
++++|.++++...++.|.+||.
T Consensus 255 ~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 255 IDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp ECTTCCEEEEEGGGTEEEEEET
T ss_pred ECCCCCEEEEccCCCeEEEEEC
Confidence 9999999999989999999985
No 225
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.45 E-value=4.1e-11 Score=92.53 Aligned_cols=186 Identities=12% Similarity=0.122 Sum_probs=137.8
Q ss_pred CCCEEEEec-CCCeEEEEEcccceEEeeeccceeeeccceeeEEe-C-CCCCeEEEEe------------------cCCe
Q 040370 30 SGDFLLAGT-DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRY-S-STGGMYVTAS------------------KDGA 88 (228)
Q Consensus 30 ~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~-~-~~~~~l~~~~------------------~dg~ 88 (228)
||+++++.. .++.|.+.|+.+.++......+. ...+..+++ + |+++++++++ .++.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~---g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPN---AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSS---CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCC---CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 788777654 46689999999999877555443 345778887 5 8999988884 3468
Q ss_pred EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCC-------------------------------------
Q 040370 89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS------------------------------------- 131 (228)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~------------------------------------- 131 (228)
+.+.|..+.+...++... .....++++|+++++++.+.+.
T Consensus 177 vtvID~~t~~v~~qI~Vg---g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i 253 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVS---GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL 253 (595)
T ss_dssp EEEEETTTTEEEEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred EEEEECCCCeEEEEEEeC---CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence 999999999888887763 2345678999999998888553
Q ss_pred -eEEEEEccC--Cee-EEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc------------eeEEeecC
Q 040370 132 -TVKLWEVSS--GRL-VKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE------------KVAKWSSN 195 (228)
Q Consensus 132 -~i~~wd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~------------~~~~~~~~ 195 (228)
.|.+.|.++ ++. +..+. .......+.++|+|+++++++..+..|.++|+.+.+ ..... .
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ip---vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v--~ 328 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIP---IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP--E 328 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEE---EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC--B
T ss_pred CcEEEEeCcccCCceeEEEEe---cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc--C
Confidence 366667665 333 33332 233456788999999999999989999999998663 22232 2
Q ss_pred CCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 196 HIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 196 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
-......++|+|+|...++.-.|+.|.+||+
T Consensus 329 vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi 359 (595)
T 1fwx_A 329 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI 359 (595)
T ss_dssp CCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred CCCCcceEEECCCCeEEEEEecCCcEEEEEh
Confidence 3346789999999965666778999999985
No 226
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.45 E-value=4.5e-11 Score=88.53 Aligned_cols=188 Identities=9% Similarity=-0.053 Sum_probs=126.5
Q ss_pred EEEeCCCCEEEEecC-----CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe----------cCCeE
Q 040370 25 VSFHPSGDFLLAGTD-----HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS----------KDGAI 89 (228)
Q Consensus 25 ~~~~~~~~~l~~~~~-----d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~v 89 (228)
....|+++.+++... ++.|.+.|..+++.+...... ..+ . ++++|+|+++++++ .++.|
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG----~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~V 111 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG----FLP-N-PVVADDGSFIAHASTVFSRIARGERTDYV 111 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC----SSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC----CCC-c-EEECCCCCEEEEEcccccccccCCCCCEE
Confidence 345689998887765 679999999999987766542 233 4 99999999888775 36789
Q ss_pred EEEeCCCCceeeEEecccc-----cceeEEEEECCCCCEEEEeeC--CCeEEEEEccCCeeEEEEecceeeeeeeEEEEC
Q 040370 90 RLWDGVSANCVRSIVGAHG-----TAEATSANFTKDQRFVLSCGK--DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFN 162 (228)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (228)
.+||..+.+.+..+..... ......+.|+|||++++.+.. ++.|.++|+.+++.+.++..... ...+.
T Consensus 112 sviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-----~~~~P 186 (386)
T 3sjl_D 112 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-----YHIFP 186 (386)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEE
T ss_pred EEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-----ceeec
Confidence 9999999998888764310 123456899999999888864 68999999999999888854211 11222
Q ss_pred CCCcEEEEeeCCCCeEEEEEcCC-cceeEEeecCC----CCCcE-EEEeC-CCCcEEEEecCCCCEEEeee
Q 040370 163 DTEEFVLSIDEPSNEIVIWDALT-AEKVAKWSSNH----IGAPR-WIEHS-PAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 163 ~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~----~~~v~-~~~~~-~~~~~l~s~~~dg~i~vwd~ 226 (228)
...+.+++.+. ||.+.+.++.+ ++..... ..+ ..++. ...|. ++|++++ .+.+|.|.+.|+
T Consensus 187 ~g~~~~~~~~~-DG~~~~v~~~~~g~v~~~~-~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~ 254 (386)
T 3sjl_D 187 TAPDTFFMHCR-DGSLAKVAFGTEGTPEITH-TEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDL 254 (386)
T ss_dssp EETTEEEEEET-TSCEEEEECCSSSCCEEEE-CCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEEC
T ss_pred CCCceeEEECC-CCCEEEEECCCCCeEEEee-cceeccccccccccceeEcCCCcEEE-EeCCCEEEEEEC
Confidence 22333444344 68888888765 4442211 111 11221 23553 6776655 445788888885
No 227
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.43 E-value=1.9e-11 Score=90.40 Aligned_cols=198 Identities=9% Similarity=0.031 Sum_probs=123.7
Q ss_pred EEEEeCCCCEEEEec----------CCCeEEEEEcccceEEeeeccceee---eccceeeEEeCCCCCeEEEEec--CCe
Q 040370 24 SVSFHPSGDFLLAGT----------DHPIAHLYDVNTFQCYLSANVPEIS---VNGAINQVRYSSTGGMYVTASK--DGA 88 (228)
Q Consensus 24 ~~~~~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~--dg~ 88 (228)
.+.++|++++++++. .++.|.+||+.+++....+...... .......+.++|+|++++++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 799999999998876 3688999999999988776543100 0134678999999999998874 467
Q ss_pred EEE--EeCCCCceeeEEeccc----------------ccceeEEEEE--------------------------CCCCCEE
Q 040370 89 IRL--WDGVSANCVRSIVGAH----------------GTAEATSANF--------------------------TKDQRFV 124 (228)
Q Consensus 89 v~i--wd~~~~~~~~~~~~~~----------------~~~~i~~~~~--------------------------~~~~~~l 124 (228)
+.+ +|+.+ +..+.... ....+..+.. .+++..+
T Consensus 149 v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~ 225 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML 225 (368)
T ss_dssp EEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred EEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE
Confidence 888 99866 22332110 0000000110 2222333
Q ss_pred EEeeCCCeEEEEEccCCe--eEEEEecc--------eeeeeeeEEEECCCCcEEEEeeC---C-----CCeEEEEEcCCc
Q 040370 125 LSCGKDSTVKLWEVSSGR--LVKQYLGA--------THTQLRFQAVFNDTEEFVLSIDE---P-----SNEIVIWDALTA 186 (228)
Q Consensus 125 ~~~~~d~~i~~wd~~~~~--~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~---~-----d~~i~i~d~~~~ 186 (228)
+..+. +.+.+.|+.... .+..+... ..+.....+.++|+++.++++.. . ++.+.++|+.+.
T Consensus 226 ~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~ 304 (368)
T 1mda_H 226 VWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG 304 (368)
T ss_dssp EECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred EEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC
Confidence 33333 566777765422 22211100 01111112578999988887543 1 235669999999
Q ss_pred ceeEEeecCCCCCcEEEEeCCCCc-EEEEec-CCCCEEEeeec
Q 040370 187 EKVAKWSSNHIGAPRWIEHSPAEA-AFITCG-TDRSVRFWKEI 227 (228)
Q Consensus 187 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~dg~i~vwd~~ 227 (228)
+.+..+..+. ....++|+|+++ ++++.. .++.|.++|+.
T Consensus 305 ~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 305 QTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp CEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred eEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence 9888875433 688999999997 566666 59999999963
No 228
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.42 E-value=4e-11 Score=90.20 Aligned_cols=186 Identities=9% Similarity=-0.045 Sum_probs=123.9
Q ss_pred CCCCEEEEecCC-----CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe----------cCCeEEEEe
Q 040370 29 PSGDFLLAGTDH-----PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS----------KDGAIRLWD 93 (228)
Q Consensus 29 ~~~~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~v~iwd 93 (228)
|+++.+++.... +.|.++|..+++.+..+... ..+ .+.++|++++++.+. .++.|.++|
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG----~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD 155 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG----FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD 155 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC----SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC----CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 466766665442 69999999999988777643 233 899999999888776 467899999
Q ss_pred CCCCceeeEEecc-cc----cceeEEEEECCCCCEEEEeeC--CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCc
Q 040370 94 GVSANCVRSIVGA-HG----TAEATSANFTKDQRFVLSCGK--DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEE 166 (228)
Q Consensus 94 ~~~~~~~~~~~~~-~~----~~~i~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (228)
..+++.+..+... .. ......+.++||+++++.+.. ++.|.+.|+.+++.+.++..... ....|++.
T Consensus 156 ~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~------~~~~p~g~ 229 (426)
T 3c75_H 156 PVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC------YHIFPASP 229 (426)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE------EEEEEEET
T ss_pred CCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc------eeeccCCC
Confidence 9999988887642 00 123456889999999998874 57899999999998888764211 12223332
Q ss_pred EEEEeeCCCCeEEEEEcCCcceeEEe---ecCCCCC-cEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 167 FVLSIDEPSNEIVIWDALTAEKVAKW---SSNHIGA-PRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 167 ~~~~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~~-v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
..+.+...||.+.+.+..+++..... ......+ ...+.+.+++..++..+..+.|.+.|+
T Consensus 230 ~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~ 293 (426)
T 3c75_H 230 TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADL 293 (426)
T ss_dssp TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEE
T ss_pred cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEec
Confidence 22222333677777777555444221 0111112 123567888877766677788888775
No 229
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.41 E-value=8.4e-10 Score=76.25 Aligned_cols=194 Identities=10% Similarity=0.005 Sum_probs=128.1
Q ss_pred eeEEEeecCc--ceEEEEEeCCCCEEEEecCC--CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC
Q 040370 11 RAFRVIQDTH--NVRSVSFHPSGDFLLAGTDH--PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD 86 (228)
Q Consensus 11 ~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d--~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 86 (228)
++++...|.. -...+.|++ +.++.+.+.+ ..|+++|+++++........... .-..++.. .++.....-.+
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~---fgeGi~~~-~~~ly~ltw~~ 84 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY---FGAGIVAW-RDRLIQLTWRN 84 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC---CEEEEEEE-TTEEEEEESSS
T ss_pred EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc---ceeEEEEe-CCEEEEEEeeC
Confidence 4455556754 466999986 5555555554 48999999999988776553211 11223333 23344445568
Q ss_pred CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeee---eeEEEECC
Q 040370 87 GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQL---RFQAVFND 163 (228)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~---~~~~~~~~ 163 (228)
+.+.++|.++.+.+.++.... .-..++ ++++.|+.+..++.|.++|..+.+.+.++....+... ...+.+.
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~---~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~- 158 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPG---EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV- 158 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSS---CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred CEEEEEECCcCcEEEEEeCCC---CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-
Confidence 999999999999999988742 223444 4567777777788999999999988887764322222 2233433
Q ss_pred CCcEEEEeeCCCCeEEEEEcCCcceeEEeecC------------CCCCcEEEEeCCCCcEEEEec
Q 040370 164 TEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN------------HIGAPRWIEHSPAEAAFITCG 216 (228)
Q Consensus 164 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~s~~ 216 (228)
++. +++....+..|.+.|.++++.+..+... ...-.+.|+++|+++.|+..|
T Consensus 159 ~G~-lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 159 NGE-LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TTE-EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CCE-EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 444 5555545689999999999988877421 113468899999766655554
No 230
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.40 E-value=1.4e-09 Score=75.88 Aligned_cols=190 Identities=14% Similarity=0.110 Sum_probs=130.1
Q ss_pred eEEEeecCcc--eEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccce--eeEEeCCCCCeEEEEecCC
Q 040370 12 AFRVIQDTHN--VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAI--NQVRYSSTGGMYVTASKDG 87 (228)
Q Consensus 12 ~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~dg 87 (228)
+.+...|... ...+.|+ ++.++.+.+.+|.|+++|+++++.+... .. ... ..+++.. ++.....-.++
T Consensus 45 Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-----~~~FgeGit~~g-~~Ly~ltw~~~ 116 (268)
T 3nok_A 45 IIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-----GNIFAEGLASDG-ERLYQLTWTEG 116 (268)
T ss_dssp EEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-----TTCCEEEEEECS-SCEEEEESSSC
T ss_pred EEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-----CCcceeEEEEeC-CEEEEEEccCC
Confidence 4455566544 4789997 4566677888899999999999877665 32 222 2355542 34444455689
Q ss_pred eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeee---eeEEEECCC
Q 040370 88 AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQL---RFQAVFNDT 164 (228)
Q Consensus 88 ~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 164 (228)
.+.++|.++.+.+.++.... .-..++ ++++.|+.+..++.|.++|..+.+.+.++........ ...+.+. +
T Consensus 117 ~v~V~D~~Tl~~~~ti~~~~---eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-d 190 (268)
T 3nok_A 117 LLFTWSGMPPQRERTTRYSG---EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-N 190 (268)
T ss_dssp EEEEEETTTTEEEEEEECSS---CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred EEEEEECCcCcEEEEEeCCC---ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-C
Confidence 99999999999999988642 223444 4677787777789999999999988887764332222 2334454 5
Q ss_pred CcEEEEeeCCCCeEEEEEcCCcceeEEeecC------------CCCCcEEEEeCCCCcEEEEec
Q 040370 165 EEFVLSIDEPSNEIVIWDALTAEKVAKWSSN------------HIGAPRWIEHSPAEAAFITCG 216 (228)
Q Consensus 165 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~s~~ 216 (228)
+ .+++....++.|.+.|.++++.+..+... -..-.+.|+++|+++.|+..|
T Consensus 191 G-~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 191 G-VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp T-EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred C-EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 5 45565655789999999999988877421 123568899999765555444
No 231
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.38 E-value=4.3e-11 Score=92.41 Aligned_cols=185 Identities=12% Similarity=0.159 Sum_probs=131.7
Q ss_pred CcceEEEEE-e-CCCCEEEEec------------------CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC
Q 040370 19 THNVRSVSF-H-PSGDFLLAGT------------------DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG 78 (228)
Q Consensus 19 ~~~v~~~~~-~-~~~~~l~~~~------------------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 78 (228)
......+++ + |+++++++++ .++.+.+.|.++.+........ +....++++|+|+
T Consensus 133 g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vg-----g~pd~~~~spdGk 207 (595)
T 1fwx_A 133 AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS-----GNLDNCDADYEGK 207 (595)
T ss_dssp CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEES-----SCCCCEEECSSSS
T ss_pred CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeC-----CCccceEECCCCC
Confidence 356788888 5 8999998884 3468999999998877666542 3456788999999
Q ss_pred eEEEEecCC--------------------------------------eEEEEeCCC--Cce-eeEEecccccceeEEEEE
Q 040370 79 MYVTASKDG--------------------------------------AIRLWDGVS--ANC-VRSIVGAHGTAEATSANF 117 (228)
Q Consensus 79 ~l~~~~~dg--------------------------------------~v~iwd~~~--~~~-~~~~~~~~~~~~i~~~~~ 117 (228)
++++.+.+. .|.+.|.++ ++. +..+.. .....++.+
T Consensus 208 ~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv---g~~PhGv~~ 284 (595)
T 1fwx_A 208 WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI---ANNPHGCNM 284 (595)
T ss_dssp EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE---ESSCCCEEE
T ss_pred EEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec---CCCceEEEE
Confidence 988887543 467777776 444 445544 335578999
Q ss_pred CCCCCEEEEee-CCCeEEEEEccCCe------------eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcC
Q 040370 118 TKDQRFVLSCG-KDSTVKLWEVSSGR------------LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL 184 (228)
Q Consensus 118 ~~~~~~l~~~~-~d~~i~~wd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~ 184 (228)
+|||+++++++ .+.+|.++|+.+.+ ...... .......+.|+|+| +++++..-|++|.+||+.
T Consensus 285 sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~---vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~ 360 (595)
T 1fwx_A 285 APDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE---LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIE 360 (595)
T ss_dssp CTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB---CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHH
T ss_pred cCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC---CCCCcceEEECCCC-eEEEEEecCCcEEEEEhh
Confidence 99999876655 67889999998653 222222 23456788999999 888888889999999997
Q ss_pred C----------cceeEEeecCCCCC-----cEEEEeCCCCcEEEEec
Q 040370 185 T----------AEKVAKWSSNHIGA-----PRWIEHSPAEAAFITCG 216 (228)
Q Consensus 185 ~----------~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~s~~ 216 (228)
+ .+.+.++ ..|..+ -..+.++|||++|+++.
T Consensus 361 ~a~~~~~g~~~~~vi~ki-dV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 361 DAIRAYAGEKVDPIKDKL-DVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp HHHHHHHTCSCCCEEEEE-ECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred HhhhhhcccccceeEEEe-ecccccccceeccceEeCCCCCEEEEcC
Confidence 7 3445555 333332 22345689999998875
No 232
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.34 E-value=1e-10 Score=94.07 Aligned_cols=194 Identities=7% Similarity=0.030 Sum_probs=121.0
Q ss_pred EEEEEeCCCCEEEEecCCC-------------eEEEEEcccceE--EeeeccceeeeccceeeEEeCCCCCeEEEEec--
Q 040370 23 RSVSFHPSGDFLLAGTDHP-------------IAHLYDVNTFQC--YLSANVPEISVNGAINQVRYSSTGGMYVTASK-- 85 (228)
Q Consensus 23 ~~~~~~~~~~~l~~~~~d~-------------~i~vw~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 85 (228)
..++|+ |++.|+.++.+. .|++|++.++.. ....... ..+......+.|+|+|++|+....
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~ 255 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAI-PAQHHRYVGATVTEDDRFLLISAANS 255 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCS-GGGCCSEEEEEECTTSCEEEEEEESS
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecC-CCCCeEEEEEEEcCCCCEEEEEEccC
Confidence 578899 999998887663 499999876542 1111111 001234678899999998765432
Q ss_pred --CCeEEEEeCCCCc-eeeEEecccccceeEEEEECCCCCEEE-EeeCC---CeEEEEEccCCee--EEEEecceeeeee
Q 040370 86 --DGAIRLWDGVSAN-CVRSIVGAHGTAEATSANFTKDQRFVL-SCGKD---STVKLWEVSSGRL--VKQYLGATHTQLR 156 (228)
Q Consensus 86 --dg~v~iwd~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d---~~i~~wd~~~~~~--~~~~~~~~~~~~~ 156 (228)
+..|.++|+.++. ....+..+ ....... +++++..|+ ....+ +.|..+|+.++.. ...+..+ ....
T Consensus 256 ~~~~~i~~~d~~~~~~~~~~l~~~--~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~~ 330 (693)
T 3iuj_A 256 TSGNRLYVKDLSQENAPLLTVQGD--LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE--RQQV 330 (693)
T ss_dssp SSCCEEEEEETTSTTCCCEEEECS--SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC--CSSC
T ss_pred CCCcEEEEEECCCCCCceEEEeCC--CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC--CCCE
Confidence 2589999998764 34455443 2233333 556565554 44333 5799999987654 2344432 2222
Q ss_pred eEEEECCCCcEEEEeeCCCC--eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCC----CCEEEeee
Q 040370 157 FQAVFNDTEEFVLSIDEPSN--EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTD----RSVRFWKE 226 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~vwd~ 226 (228)
. .+++++..++.....++ .|++||+..+ ....+.....+.+..+.++|+++.|+....+ +.+..||+
T Consensus 331 ~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 331 L--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp E--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred E--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence 2 77888888887766555 6888998744 4444433455667788888888766654433 66777764
No 233
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.30 E-value=6.8e-10 Score=88.90 Aligned_cols=188 Identities=11% Similarity=0.054 Sum_probs=127.1
Q ss_pred EEEEEeCCCCEEEEecCCC-------------------eEEEEEcccceEEeeeccceee-----eccceeeEEeCCCC-
Q 040370 23 RSVSFHPSGDFLLAGTDHP-------------------IAHLYDVNTFQCYLSANVPEIS-----VNGAINQVRYSSTG- 77 (228)
Q Consensus 23 ~~~~~~~~~~~l~~~~~d~-------------------~i~vw~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~- 77 (228)
..++++|++..++.++.++ .|..+|.++|+.+..++..... .......+....+|
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~ 325 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK 325 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence 3578899888888887664 5999999999988776542110 01112222333466
Q ss_pred --CeEEEEecCCeEEEEeCCCCceeeEEecccc---------ccee------------------------EEEEECCCCC
Q 040370 78 --GMYVTASKDGAIRLWDGVSANCVRSIVGAHG---------TAEA------------------------TSANFTKDQR 122 (228)
Q Consensus 78 --~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---------~~~i------------------------~~~~~~~~~~ 122 (228)
..++.++.+|.++++|.++++.+..+..... ..++ ..++++|+..
T Consensus 326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~ 405 (677)
T 1kb0_A 326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG 405 (677)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence 6789999999999999999998776653210 0111 1467888888
Q ss_pred EEEEeeC-------------------------------------------CCeEEEEEccCCeeEEEEecceeeeeeeEE
Q 040370 123 FVLSCGK-------------------------------------------DSTVKLWEVSSGRLVKQYLGATHTQLRFQA 159 (228)
Q Consensus 123 ~l~~~~~-------------------------------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
++++... .+.|..||+.+++.+-.+... ......
T Consensus 406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~---~~~~~g 482 (677)
T 1kb0_A 406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV---SPWNGG 482 (677)
T ss_dssp EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES---SSCCCC
T ss_pred EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC---CCCcCc
Confidence 8777543 278999999999988777532 222223
Q ss_pred EECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEE
Q 040370 160 VFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFIT 214 (228)
Q Consensus 160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 214 (228)
.+...+..++.+ ..|+.+++||.++++.+..+..++.....-+.+.++|+.++.
T Consensus 483 ~~~~~g~~v~~g-~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 483 TLTTAGNVVFQG-TADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEEETTTEEEEE-CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred ceEeCCCEEEEE-CCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 344556667765 558999999999999999886555444445666677765443
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.28 E-value=1.9e-12 Score=96.43 Aligned_cols=174 Identities=8% Similarity=-0.000 Sum_probs=89.3
Q ss_pred cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceee-EEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370 20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQ-VRYSSTGGMYVTASKDGAIRLWDGVSAN 98 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 98 (228)
.++.+..+.+++..+++++.|+.|+.||.++++.+....... ...+.+ ..+. .+..+++++.|+.++.||.++|+
T Consensus 38 ~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~---~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~ 113 (369)
T 2hz6_A 38 DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI---PELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGE 113 (369)
T ss_dssp CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCH---HHHHTTCSCC------CCCCEEEEEEEEECCC---
T ss_pred CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccC---ccccccCceEe-cCCEEEEEeCCCEEEEEECCCCc
Confidence 445555555677788888899999999999887654443221 111111 1111 34567888889999999999999
Q ss_pred eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCC---cEEEEeeCCC
Q 040370 99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE---EFVLSIDEPS 175 (228)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d 175 (228)
.+..+..+. ...++|++..+++++.|+.|+.||.++++.+..+.... .....+.++. ..+++++. |
T Consensus 114 ~~w~~~~~~------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~-d 182 (369)
T 2hz6_A 114 KQQTLSSAF------ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD----YAASLPEDDVDYKMSHFVSNG-D 182 (369)
T ss_dssp -------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE----ECCBCCCCCTTCCCCEEEEET-S
T ss_pred EEEEecCCC------cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc----ccCccccCCccccceEEEECC-C
Confidence 887765532 13456688889999999999999999998776654321 1222233321 44555444 7
Q ss_pred CeEEEEEcCCcceeEEeecCCCCCcEE-EEeCCCCc
Q 040370 176 NEIVIWDALTAEKVAKWSSNHIGAPRW-IEHSPAEA 210 (228)
Q Consensus 176 ~~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~ 210 (228)
|.++.||.++++.+-... ...++.. ..+++++.
T Consensus 183 g~v~a~d~~tG~~~W~~~--~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 183 GLVVTVDSESGDVLWIQN--YASPVVAFYVWQREGL 216 (369)
T ss_dssp CEEEEECTTTCCEEEEEE--CSSCEEEEEECTTSSC
T ss_pred CEEEEEECCCCcEEEEec--CCCceEEEEEecCCce
Confidence 999999999999877663 3444443 34444553
No 235
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.27 E-value=3.9e-08 Score=71.25 Aligned_cols=197 Identities=8% Similarity=-0.013 Sum_probs=122.5
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC--CeEEEEeCCC
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD--GAIRLWDGVS 96 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~v~iwd~~~ 96 (228)
......++|+++++++++-..++.|..+|.+... ...... ...+..+++.++++++++.... ..|..+|..+
T Consensus 31 ~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~~~~~-----~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 31 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHATV-----EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEEEC-----SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT
T ss_pred CCCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EEEEeC-----CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCC
Confidence 3668899999999877777788999999877532 222221 3467889999999866555332 2477777777
Q ss_pred CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee-EEEEec-------ceeeeeeeEEEECCCCcEE
Q 040370 97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL-VKQYLG-------ATHTQLRFQAVFNDTEEFV 168 (228)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~ 168 (228)
++......... ......++..+++..+++-..++.|+++|...++. +..... .........+ ++++.++
T Consensus 105 g~~~~~~~~~~-~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~l 181 (306)
T 2p4o_A 105 GTVETLLTLPD-AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFL 181 (306)
T ss_dssp SCEEEEEECTT-CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEE
T ss_pred CeEEEEEeCCC-ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEE
Confidence 76543332211 22334555555555555555688999999875431 211100 0000111223 6778888
Q ss_pred EEeeCCCCeEEEEEcCC-cce--eEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 169 LSIDEPSNEIVIWDALT-AEK--VAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 169 ~~~~~~d~~i~i~d~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
+++....+.|..+|+.. ++. ...+.. ......++++++|+++++....+.|.+++.
T Consensus 182 yv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~ 240 (306)
T 2p4o_A 182 YVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAP 240 (306)
T ss_dssp EEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred EEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECC
Confidence 88887779999999864 321 111111 134667899999988777777788888763
No 236
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.26 E-value=5e-08 Score=69.22 Aligned_cols=196 Identities=8% Similarity=-0.012 Sum_probs=123.4
Q ss_pred cceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCCeEEEEeCCCC
Q 040370 20 HNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDGAIRLWDGVSA 97 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~ 97 (228)
..+..++|+|++..|+ +-..++.|.++++............ ......++++|++..++ +-...+.|.++++...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~----~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD----LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT----CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC----CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC
Confidence 4578999999665555 5556789999998765432222111 24578899998655444 5556789999998643
Q ss_pred ceeeEEecccccceeEEEEECCCCCEEEEeeC---CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC
Q 040370 98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCGK---DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP 174 (228)
Q Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
.. ..+.... ......++++|++..|+.+.. .+.|..+++.. +....+... .......+++++++..++.+...
T Consensus 112 ~~-~~~~~~~-~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~-~~~~P~gia~d~~~~~lyv~d~~ 187 (267)
T 1npe_A 112 QR-RVLFDTG-LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQD-NLGLPNGLTFDAFSSQLCWVDAG 187 (267)
T ss_dssp SC-EEEECSS-CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECT-TCSCEEEEEEETTTTEEEEEETT
T ss_pred CE-EEEEECC-CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEEC-CCCCCcEEEEcCCCCEEEEEECC
Confidence 32 2222211 245688999997666655543 36888888754 333333211 22345678899988888887777
Q ss_pred CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 175 SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 175 d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
.+.|.++|.......... .. ......++.. .+.++++....+.|..+|.
T Consensus 188 ~~~I~~~~~~g~~~~~~~-~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~ 236 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVL-EG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDL 236 (267)
T ss_dssp TTEEEEEETTEEEEEEEE-EC-CCSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred CCEEEEEecCCCceEEEe-cC-CCCceEEEEe-CCEEEEEECCCCeEEEEeC
Confidence 799999998754433332 22 2344667664 4555555556678888775
No 237
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.26 E-value=1.6e-09 Score=86.90 Aligned_cols=186 Identities=11% Similarity=0.103 Sum_probs=123.0
Q ss_pred EEEEeCCCCEEEEecCCCe-------------------EEEEEcccceEEeeeccceee-----eccceeeEEeCCCCC-
Q 040370 24 SVSFHPSGDFLLAGTDHPI-------------------AHLYDVNTFQCYLSANVPEIS-----VNGAINQVRYSSTGG- 78 (228)
Q Consensus 24 ~~~~~~~~~~l~~~~~d~~-------------------i~vw~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~- 78 (228)
.++++|+...++.++.++. |..+|.++|+.+..++..... ....+.......+|+
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~ 318 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP 318 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence 5788998889998887764 999999999988776542100 011122222222554
Q ss_pred --eEEEEecCCeEEEEeCCCCceeeEEecccc--------------------------c-----------ceeEEEEECC
Q 040370 79 --MYVTASKDGAIRLWDGVSANCVRSIVGAHG--------------------------T-----------AEATSANFTK 119 (228)
Q Consensus 79 --~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--------------------------~-----------~~i~~~~~~~ 119 (228)
.++.++.+|.++++|.++++.+........ . ..-..++++|
T Consensus 319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp 398 (689)
T 1yiq_A 319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP 398 (689)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence 788999999999999999998744332110 0 0011267888
Q ss_pred CCCEEEEeeC---------------------------------------------CCeEEEEEccCCeeEEEEecceeee
Q 040370 120 DQRFVLSCGK---------------------------------------------DSTVKLWEVSSGRLVKQYLGATHTQ 154 (228)
Q Consensus 120 ~~~~l~~~~~---------------------------------------------d~~i~~wd~~~~~~~~~~~~~~~~~ 154 (228)
+..++++... +|.|+.||+.+++.+-.+....
T Consensus 399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~--- 475 (689)
T 1yiq_A 399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT--- 475 (689)
T ss_dssp TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS---
T ss_pred CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC---
Confidence 8777776532 3779999999999887775422
Q ss_pred eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEE
Q 040370 155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFI 213 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 213 (228)
......+...+..++.+ +.|+.++.||.++|+.+.++..++.....-+.|..+|+..+
T Consensus 476 ~~~~g~~~tagglvf~g-t~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 476 IFNGGTLSTAGNLVFEG-SADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp SCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CccCccceECCCEEEEE-CCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence 11222334456666665 45899999999999999888545444344466777777443
No 238
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.22 E-value=2.1e-09 Score=86.34 Aligned_cols=186 Identities=12% Similarity=0.076 Sum_probs=124.0
Q ss_pred CCeEEEEEcccceEEeeecccee---------------------------eeccceeeEEeCCCCCeEEEEecCCe----
Q 040370 40 HPIAHLYDVNTFQCYLSANVPEI---------------------------SVNGAINQVRYSSTGGMYVTASKDGA---- 88 (228)
Q Consensus 40 d~~i~vw~~~~~~~~~~~~~~~~---------------------------~~~~~i~~~~~~~~~~~l~~~~~dg~---- 88 (228)
++.|..+|.++|+.+........ .....-..+.++|+...++.+..++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~ 261 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP 261 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence 68999999999998766542110 00111236788888888999888764
Q ss_pred ---------------EEEEeCCCCceeeEEeccccc-------ceeEEEEECCCCC---EEEEeeCCCeEEEEEccCCee
Q 040370 89 ---------------IRLWDGVSANCVRSIVGAHGT-------AEATSANFTKDQR---FVLSCGKDSTVKLWEVSSGRL 143 (228)
Q Consensus 89 ---------------v~iwd~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~---~l~~~~~d~~i~~wd~~~~~~ 143 (228)
|..+|.++++.+-.++..++. .+........+++ .++.++.+|.++++|.++++.
T Consensus 262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL 341 (689)
T ss_dssp HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence 999999999998877653221 1222222223554 788999999999999999998
Q ss_pred EEEEecceee--------------------------e-----------eeeEEEECCCCcEEEEeeC-------------
Q 040370 144 VKQYLGATHT--------------------------Q-----------LRFQAVFNDTEEFVLSIDE------------- 173 (228)
Q Consensus 144 ~~~~~~~~~~--------------------------~-----------~~~~~~~~~~~~~~~~~~~------------- 173 (228)
+......... . .-..++++|+...+++...
T Consensus 342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~ 421 (689)
T 1yiq_A 342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP 421 (689)
T ss_dssp EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC
T ss_pred eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc
Confidence 7543321100 0 0011566777666665321
Q ss_pred -------------------------------CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEE
Q 040370 174 -------------------------------PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVR 222 (228)
Q Consensus 174 -------------------------------~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 222 (228)
.+|.|..||+++++.+-+... ..+...-.+...+.+++.++.||.++
T Consensus 422 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~tagglvf~gt~dg~l~ 499 (689)
T 1yiq_A 422 KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY--VTIFNGGTLSTAGNLVFEGSADGRVI 499 (689)
T ss_dssp CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEE
T ss_pred cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC--CCCccCccceECCCEEEEECCCCcEE
Confidence 137899999999998877632 22333335556778899999999999
Q ss_pred Eeeec
Q 040370 223 FWKEI 227 (228)
Q Consensus 223 vwd~~ 227 (228)
.||..
T Consensus 500 a~D~~ 504 (689)
T 1yiq_A 500 AYAAD 504 (689)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99953
No 239
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.22 E-value=2.8e-09 Score=85.38 Aligned_cols=195 Identities=11% Similarity=0.095 Sum_probs=132.3
Q ss_pred CCEEEEecC------CCeEEEEEcccceEEeeeccceee----------------------------eccceeeEEeCCC
Q 040370 31 GDFLLAGTD------HPIAHLYDVNTFQCYLSANVPEIS----------------------------VNGAINQVRYSST 76 (228)
Q Consensus 31 ~~~l~~~~~------d~~i~vw~~~~~~~~~~~~~~~~~----------------------------~~~~i~~~~~~~~ 76 (228)
+..+++++. ++.|+.+|.++|+.+......... .......++++|+
T Consensus 174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~ 253 (677)
T 1kb0_A 174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE 253 (677)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT
T ss_pred CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC
Confidence 345555543 689999999999987665432110 0112245788888
Q ss_pred CCeEEEEecCC-------------------eEEEEeCCCCceeeEEeccccc-------ceeEEEEECCCC---CEEEEe
Q 040370 77 GGMYVTASKDG-------------------AIRLWDGVSANCVRSIVGAHGT-------AEATSANFTKDQ---RFVLSC 127 (228)
Q Consensus 77 ~~~l~~~~~dg-------------------~v~iwd~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~---~~l~~~ 127 (228)
+..++.+..++ .|..+|.++++....++..++. .....+....+| ..++.+
T Consensus 254 ~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~ 333 (677)
T 1kb0_A 254 LNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHA 333 (677)
T ss_dssp TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEEC
T ss_pred CCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEE
Confidence 88888887664 5999999999988877653321 122223333467 689999
Q ss_pred eCCCeEEEEEccCCeeEEEEecceee---------eee------------------------eEEEECCCCcEEEEeeC-
Q 040370 128 GKDSTVKLWEVSSGRLVKQYLGATHT---------QLR------------------------FQAVFNDTEEFVLSIDE- 173 (228)
Q Consensus 128 ~~d~~i~~wd~~~~~~~~~~~~~~~~---------~~~------------------------~~~~~~~~~~~~~~~~~- 173 (228)
+.+|.++++|.++++.+..+...... ..+ ..++++|+...+++...
T Consensus 334 ~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~ 413 (677)
T 1kb0_A 334 PKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQN 413 (677)
T ss_dssp CTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEE
T ss_pred CCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChh
Confidence 99999999999999988766422100 000 13567787777766422
Q ss_pred -----------------------------------------CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEE
Q 040370 174 -----------------------------------------PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAF 212 (228)
Q Consensus 174 -----------------------------------------~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 212 (228)
..+.|..||+.+++.+-+.. +..++....+...+.++
T Consensus 414 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v 491 (677)
T 1kb0_A 414 VPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAGNVV 491 (677)
T ss_dssp CCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEE
T ss_pred cceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcCcceEeCCCEE
Confidence 12789999999999887763 33344555566677888
Q ss_pred EEecCCCCEEEeeec
Q 040370 213 ITCGTDRSVRFWKEI 227 (228)
Q Consensus 213 ~s~~~dg~i~vwd~~ 227 (228)
+.++.||.+++||..
T Consensus 492 ~~g~~dg~l~a~D~~ 506 (677)
T 1kb0_A 492 FQGTADGRLVAYHAA 506 (677)
T ss_dssp EEECTTSEEEEEETT
T ss_pred EEECCCCcEEEEECC
Confidence 889999999999963
No 240
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.20 E-value=2.9e-08 Score=72.44 Aligned_cols=191 Identities=8% Similarity=0.010 Sum_probs=119.9
Q ss_pred cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccc---------------eeeeccceeeEEeCC-CCCeEEEE
Q 040370 20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP---------------EISVNGAINQVRYSS-TGGMYVTA 83 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~---------------~~~~~~~i~~~~~~~-~~~~l~~~ 83 (228)
....+++|++++++++++..++.|..|+...++........ .......+..+++.+ +++ |+.+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 45678899999987888888999999988765432211000 000023578899997 555 5555
Q ss_pred ecCCeEEEEeCCCCceeeEEecc---cccceeEEEEECC-CCCEEEEeeC-----------------CCeEEEEEccCCe
Q 040370 84 SKDGAIRLWDGVSANCVRSIVGA---HGTAEATSANFTK-DQRFVLSCGK-----------------DSTVKLWEVSSGR 142 (228)
Q Consensus 84 ~~dg~v~iwd~~~~~~~~~~~~~---~~~~~i~~~~~~~-~~~~l~~~~~-----------------d~~i~~wd~~~~~ 142 (228)
...+.+..+|..+++. ..+... ........+++.+ +|+..++-.. ++.|..+|..+++
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 5555688888765542 222211 0113467899999 8886665432 3678899987665
Q ss_pred eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc--eeEEeecCCCCCcEEEEeCCCCcEEEEecC
Q 040370 143 LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE--KVAKWSSNHIGAPRWIEHSPAEAAFITCGT 217 (228)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 217 (228)
...... .......+++++++..++++...++.|.+|++.... ....+.. ..+ ...+++.++|++.++...
T Consensus 177 ~~~~~~---~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 177 TTLLLK---ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp EEEEEE---EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEEE
T ss_pred EEEecc---CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEecC
Confidence 433222 223345688999998777766656899999987521 1112211 223 788999999987766543
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.16 E-value=7.9e-09 Score=75.42 Aligned_cols=188 Identities=5% Similarity=-0.009 Sum_probs=121.6
Q ss_pred cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA 97 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 97 (228)
+...+.++...+++. +..++.++.|..+|.+ ++........ ...+.++...+++.. ..++ +.+..+| .++
T Consensus 135 ~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~----~~~~~~~~~d~~g~l-~v~t--~~l~~~d-~~g 204 (330)
T 3hxj_A 135 KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTN----DAITSAASIGKDGTI-YFGS--DKVYAIN-PDG 204 (330)
T ss_dssp SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECS----SCCCSCCEECTTCCE-EEES--SSEEEEC-TTS
T ss_pred CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecC----CCceeeeEEcCCCEE-EEEe--CEEEEEC-CCC
Confidence 344455666665665 5667778899999988 7665544432 345677778777764 4454 7899999 777
Q ss_pred ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCe
Q 040370 98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNE 177 (228)
Q Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 177 (228)
+........ ...+.++...+++. +..++.++.+..+|. +++....+... ......+...+++...+. .. ++.
T Consensus 205 ~~~~~~~~~--~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~--~~~~~~~~~~~~g~l~v~-t~-~gg 276 (330)
T 3hxj_A 205 TEKWNFYAG--YWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTG--KRIESSPVIGNTDTIYFG-SY-DGH 276 (330)
T ss_dssp CEEEEECCS--SCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECS--SCCCSCCEECTTSCEEEE-CT-TCE
T ss_pred cEEEEEccC--CcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCC--CCccccceEcCCCeEEEe-cC-CCC
Confidence 766655543 34577777887765 556667788888884 55655555432 222233444555544443 33 588
Q ss_pred EEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 178 IVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 178 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
+..+|. +++..... ......+.++...+++. |..++.+|.+.+...
T Consensus 277 l~~~d~-~g~~~~~~-~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 277 LYAINP-DGTEKWNF-ETGSWIIATPVIDENGT-IYFGTRNGKFYALFN 322 (330)
T ss_dssp EEEECT-TSCEEEEE-ECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC
T ss_pred EEEECC-CCcEEEEE-EcCCccccceEEcCCCE-EEEEcCCCeEEEEec
Confidence 999995 67766655 33445667777777776 555788999988654
No 242
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=99.15 E-value=2.8e-07 Score=64.55 Aligned_cols=203 Identities=10% Similarity=0.096 Sum_probs=131.5
Q ss_pred ecCcceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC
Q 040370 17 QDTHNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV 95 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~ 95 (228)
+-...+..++|+|+++.|+ +...++.|...|.. ++......... ......+++.+++.++++.-.++.+.++++.
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g---~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF---VKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS---CSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC---CCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3346799999999766554 57778889999988 77666554321 3467788998888776776677889999876
Q ss_pred CCce---eeEEec----ccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC---CeeEEEEec-----ceeeeeeeEEE
Q 040370 96 SANC---VRSIVG----AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS---GRLVKQYLG-----ATHTQLRFQAV 160 (228)
Q Consensus 96 ~~~~---~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~---~~~~~~~~~-----~~~~~~~~~~~ 160 (228)
.... ...... .........++|+|.++.|+++.......+|.+.. ...+..... .........+.
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 5442 222221 11244568999999988777777665556665541 111222211 11122457888
Q ss_pred ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecC--C------CCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN--H------IGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--~------~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
++|....+++.+.....+..+|.. ++.+..+.-. . ....-.|+|.++|++.++ ++-+.+..+.
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 889887777777778999999965 5555544221 1 136788999999985555 6666555543
No 243
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.13 E-value=1.1e-07 Score=69.46 Aligned_cols=197 Identities=12% Similarity=0.010 Sum_probs=120.4
Q ss_pred ceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCeEEEEec-------------
Q 040370 21 NVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGMYVTASK------------- 85 (228)
Q Consensus 21 ~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~------------- 85 (228)
.+..+++.+ +++ |+++...+.|..+|..+++..................+++.+ +|+..++-..
T Consensus 81 ~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 81 RTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp CEEEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred CCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 578899998 555 444544455888887765422211111111123568899999 8986666432
Q ss_pred ----CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEe-eCCCeEEEEEccCCe--eEEEEecceeeeeeeE
Q 040370 86 ----DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC-GKDSTVKLWEVSSGR--LVKQYLGATHTQLRFQ 158 (228)
Q Consensus 86 ----dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~ 158 (228)
++.|..+|..+++....... ......++++|+++.|+.+ ...+.|.+|++.... ....+.. ... ...
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~~~~~---~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~g 233 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTLLLKE---LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGN 233 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEEEEEE---ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEE
T ss_pred ccCCCceEEEEeCCCCEEEEeccC---CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCC
Confidence 36788899876654332222 2234679999999866555 556889999987421 1112211 112 456
Q ss_pred EEECCCCcEEEEeeC---------CCCeEEEEEcCCcceeEEeecCC---CCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 159 AVFNDTEEFVLSIDE---------PSNEIVIWDALTAEKVAKWSSNH---IGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~---------~d~~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
+++.+++.+.++... ..+.|..+|. .++.+..+.... ...+..+.+ .+++++++...++.|..+++
T Consensus 234 i~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 234 IKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVY 311 (322)
T ss_dssp EEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC
T ss_pred eEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEec
Confidence 788898886666433 1367888886 466666553222 234666766 46777777767888888875
No 244
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=99.13 E-value=1.4e-08 Score=82.34 Aligned_cols=194 Identities=11% Similarity=0.089 Sum_probs=113.0
Q ss_pred ceEEEEEe-CCCCEEEEecC-----CCeEEEEEcccc-eEEeeeccceeeeccceeeEEeCCCCCeEEEEecC-----Ce
Q 040370 21 NVRSVSFH-PSGDFLLAGTD-----HPIAHLYDVNTF-QCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD-----GA 88 (228)
Q Consensus 21 ~v~~~~~~-~~~~~l~~~~~-----d~~i~vw~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~ 88 (228)
.+...+|| |||++||.+.. ...|+++|+.++ +.+. ... ......+.|+|+++.|+....| ..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--~~~----~~~~~~~~WspDg~~l~y~~~d~~~~~~~ 248 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--DKV----SGTNGEIVWGPDHTSLFYVTKDETLRENK 248 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--CCE----EEECSCCEECSSTTEEEEEEECTTCCEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--ccc----cCceeeEEEecCCCEEEEEEECCCCCCCE
Confidence 57889999 99998885432 235999999988 6221 111 2224678999999888877665 35
Q ss_pred EEEEeCCCCcee--eEEecccccceeEEEEECCCCCEEEEeeC---CCeEEEEEccCCe-eE--EEEecceeeeeeeEEE
Q 040370 89 IRLWDGVSANCV--RSIVGAHGTAEATSANFTKDQRFVLSCGK---DSTVKLWEVSSGR-LV--KQYLGATHTQLRFQAV 160 (228)
Q Consensus 89 v~iwd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~-~~--~~~~~~~~~~~~~~~~ 160 (228)
|.++++.+++.. ..+.... ......+.|+||+++|+..+. ...|+++|+.++. .. ..+... .........
T Consensus 249 v~~~~lgt~~~~~~lv~~~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~~~~~~s~~ 326 (751)
T 2xe4_A 249 VWRHVMGKLQSEDVCLYEEHN-PLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR-EKGVRYDVQ 326 (751)
T ss_dssp EEEEETTSCGGGCEEEEECCC-TTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC-CTTCCEEEE
T ss_pred EEEEECCCCchhcEEEEecCC-CceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC-CCCceEEEe
Confidence 888888776432 2222221 234567899999998876653 3468889988752 12 222211 222333444
Q ss_pred ECCCCcEEEEeeCC---CCeEEEEEcCCcceeEE-eecCCCC--CcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370 161 FNDTEEFVLSIDEP---SNEIVIWDALTAEKVAK-WSSNHIG--APRWIEHSPAEAAFITCGTDRSVRFW 224 (228)
Q Consensus 161 ~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~-~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~vw 224 (228)
|+..+.+++.+... ...|..+|+.++..... +. .+.. .+..+.+. .+.++++...++..++|
T Consensus 327 ~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li-~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 327 MHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV-DHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp EETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEE-CCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred eeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEE-CCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence 44444444444331 24677778765322222 21 2222 34556654 34556666677765554
No 245
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.09 E-value=5.9e-08 Score=68.34 Aligned_cols=154 Identities=6% Similarity=0.025 Sum_probs=111.1
Q ss_pred EEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeE
Q 040370 24 SVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRS 102 (228)
Q Consensus 24 ~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 102 (228)
.+++. ++.|+ +.-.++.+.++|..+.+.+..+... .. . ...++++++.++++..++.|.++|..+.+....
T Consensus 70 Gi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~-~----g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~ 141 (266)
T 2iwa_A 70 GLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MK-D----GWGLATDGKILYGSDGTSILYEIDPHTFKLIKK 141 (266)
T ss_dssp EEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECC-SS-S----CCEEEECSSSEEEECSSSEEEEECTTTCCEEEE
T ss_pred EEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECC-CC-C----eEEEEECCCEEEEECCCCeEEEEECCCCcEEEE
Confidence 34443 44554 4556889999999999887766543 11 1 233556788787777889999999999988888
Q ss_pred Eecccccc---eeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEeccee-----------eeeeeEEEECCCCcEE
Q 040370 103 IVGAHGTA---EATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATH-----------TQLRFQAVFNDTEEFV 168 (228)
Q Consensus 103 ~~~~~~~~---~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 168 (228)
+....... .++.+.|. ++...+....++.|.+.|..+++.+..+..... ......++++|+++.+
T Consensus 142 I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l 220 (266)
T 2iwa_A 142 HNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRI 220 (266)
T ss_dssp EECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEE
T ss_pred EEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEE
Confidence 77532122 35677777 676555555678999999999999888864211 1245789999999999
Q ss_pred EEeeCCCCeEEEEEcCCc
Q 040370 169 LSIDEPSNEIVIWDALTA 186 (228)
Q Consensus 169 ~~~~~~d~~i~i~d~~~~ 186 (228)
++++...+.+...++...
T Consensus 221 fVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 221 FVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTCSEEEEEEEEEC
T ss_pred EEECCCCCeEEEEEEecc
Confidence 998887899999887654
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.08 E-value=3.7e-07 Score=64.73 Aligned_cols=180 Identities=8% Similarity=-0.011 Sum_probs=113.0
Q ss_pred cceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec---CCeEEEEeCC
Q 040370 20 HNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK---DGAIRLWDGV 95 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~v~iwd~~ 95 (228)
.....++++|++..|+ +-...+.|.+++++........... ......++++|++..|+.+.. .+.|..+++.
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~----~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d 154 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG----LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD 154 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS----CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECC----CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence 4678999999755554 5556788999998753321111111 235688999996665555543 3688888875
Q ss_pred CCceeeEEecccccceeEEEEECCCCCEEEEe-eCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC
Q 040370 96 SANCVRSIVGAHGTAEATSANFTKDQRFVLSC-GKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP 174 (228)
Q Consensus 96 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
. .....+... .......+++++++..|+.+ ...+.|.++|+............ .....++. ++..++.+...
T Consensus 155 g-~~~~~~~~~-~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~--d~~~lyva~~~ 227 (267)
T 1npe_A 155 G-TNRRILAQD-NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTS--YGKNLYYTDWK 227 (267)
T ss_dssp S-CCCEEEECT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEE--ETTEEEEEETT
T ss_pred C-CCcEEEEEC-CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEE--eCCEEEEEECC
Confidence 3 333333211 13456889999987665544 45678999998754433333221 12233443 35666666666
Q ss_pred CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc
Q 040370 175 SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA 210 (228)
Q Consensus 175 d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (228)
.+.|..+|..+++....+..+.......+++.|++.
T Consensus 228 ~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 228 TNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 789999999999888887443333467788887654
No 247
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.02 E-value=6.8e-08 Score=70.45 Aligned_cols=175 Identities=7% Similarity=-0.034 Sum_probs=114.4
Q ss_pred CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccc
Q 040370 31 GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTA 110 (228)
Q Consensus 31 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 110 (228)
+..+..++.++.|..+|.+ ++........ ...+.++...+++. +..++.++.|..+|.. ++....+... ..
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~----~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~--~~ 177 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTK----KAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTN--DA 177 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECS----SCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECS--SC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCC----CceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecC--CC
Confidence 5567778888999999988 6655444332 34456667776776 6667888999999998 7776666543 34
Q ss_pred eeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeE
Q 040370 111 EATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVA 190 (228)
Q Consensus 111 ~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~ 190 (228)
.+.++...+++...+ ++ +.+..+| .+++....... ....+..+...+++...+.+ . ++.+..+| .+++...
T Consensus 178 ~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~--~~~~~~~~~~~~~g~l~v~t-~-~~gl~~~~-~~g~~~~ 248 (330)
T 3hxj_A 178 ITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYA--GYWTVTRPAISEDGTIYVTS-L-DGHLYAIN-PDGTEKW 248 (330)
T ss_dssp CCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECC--SSCCCSCCEECTTSCEEEEE-T-TTEEEEEC-TTSCEEE
T ss_pred ceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEcc--CCcceeceEECCCCeEEEEc-C-CCeEEEEC-CCCCEeE
Confidence 566677777777544 44 7799999 67776655543 23445566677776655543 3 57888887 4566655
Q ss_pred EeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 191 KWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 191 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
... .....+..+...+++. |..++.+|.+..+|
T Consensus 249 ~~~-~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 249 RFK-TGKRIESSPVIGNTDT-IYFGSYDGHLYAIN 281 (330)
T ss_dssp EEE-CSSCCCSCCEECTTSC-EEEECTTCEEEEEC
T ss_pred Eee-CCCCccccceEcCCCe-EEEecCCCCEEEEC
Confidence 552 2333344455655554 55667777777776
No 248
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=99.02 E-value=2.1e-06 Score=64.22 Aligned_cols=198 Identities=9% Similarity=-0.010 Sum_probs=124.0
Q ss_pred cCcceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCC-CeEEEEecCCeEEEEeCC
Q 040370 18 DTHNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG-GMYVTASKDGAIRLWDGV 95 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~iwd~~ 95 (228)
....+..++|++.+..|+ +-...+.|..++++........... ......+++.+.+ +++++-...+.|.+.++.
T Consensus 114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~----~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d 189 (386)
T 3v65_B 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG----LESPGGLAVDWVHDKLYWTDSGTSRIEVANLD 189 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS----CSCCCCEEEETTTTEEEEEETTTTEEEECBTT
T ss_pred CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC----CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC
Confidence 345678899998555544 5556788999998765433222211 2345678888754 445555667889998886
Q ss_pred CCceeeEEecccccceeEEEEECCCCCEEEEee-CC-CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370 96 SANCVRSIVGAHGTAEATSANFTKDQRFVLSCG-KD-STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE 173 (228)
Q Consensus 96 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
.......+... -.....++++|.+..|+.+. .. +.|..+++... ....+.. ........++++|++..++.+..
T Consensus 190 g~~~~~l~~~~--l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~-~~~~~PnGlavd~~~~~lY~aD~ 265 (386)
T 3v65_B 190 GAHRKVLLWQS--LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIAD-THLFWPNGLTIDYAGRRMYWVDA 265 (386)
T ss_dssp SCSCEEEECSS--CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEEC-SSCSCEEEEEEEGGGTEEEEEET
T ss_pred CCceEEeecCC--CCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-CcEEEEE-CCCCCeeeEEEeCCCCEEEEEEC
Confidence 44333222221 34568899998666555444 34 67888887643 3333321 12334567889988888888887
Q ss_pred CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 174 PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 174 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
..+.|..+|+...... .+..........+++ ..+.++++-...+.|..++
T Consensus 266 ~~~~I~~~d~dG~~~~-~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 266 KHHVIERANLDGSHRK-AVISQGLPHPFAITV-FEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp TTTEEEEECTTSCSCE-EEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCCeeE-EEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEE
Confidence 7799999998644333 332333455678888 4456666666677777665
No 249
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.02 E-value=4.2e-07 Score=67.69 Aligned_cols=188 Identities=6% Similarity=0.003 Sum_probs=112.6
Q ss_pred CCCEEEEecCCCeEEEEEcccceEEeeeccceeee-----ccce-eeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEE
Q 040370 30 SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISV-----NGAI-NQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSI 103 (228)
Q Consensus 30 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~-----~~~i-~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 103 (228)
.+..+++++.++.|..+|.++++.+.......... ...+ ..+.. ++..++.++.++.|..+|.++++.....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 46678888889999999999998876655432100 1112 12222 4567888889999999999999987766
Q ss_pred ecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeee---eeEEEECCCCcEEEEeeCCCCeEEE
Q 040370 104 VGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQL---RFQAVFNDTEEFVLSIDEPSNEIVI 180 (228)
Q Consensus 104 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~i~i 180 (228)
.... ........ .+..++.++.++.+..+|.++++.+........... ....... +..++++. .++.+..
T Consensus 130 ~~~~--~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~-~~g~l~~ 202 (376)
T 3q7m_A 130 KVAG--EALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGG-DNGRVSA 202 (376)
T ss_dssp ECSS--CCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECC-TTTEEEE
T ss_pred eCCC--ceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEc-CCCEEEE
Confidence 5532 11111111 245788888999999999999988877654221100 0111111 34455544 4699999
Q ss_pred EEcCCcceeEEeecCCCCC------cEEEEeCC--CCcEEEEecCCCCEEEeee
Q 040370 181 WDALTAEKVAKWSSNHIGA------PRWIEHSP--AEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 181 ~d~~~~~~~~~~~~~~~~~------v~~~~~~~--~~~~l~s~~~dg~i~vwd~ 226 (228)
+|.++++............ +..+.-.| .+..++.++.++.+..+|.
T Consensus 203 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~ 256 (376)
T 3q7m_A 203 VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDL 256 (376)
T ss_dssp EETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEET
T ss_pred EECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEEC
Confidence 9999998876653221100 00011112 2445666667777777764
No 250
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.02 E-value=2.1e-07 Score=69.32 Aligned_cols=183 Identities=11% Similarity=0.035 Sum_probs=115.4
Q ss_pred CCEEEEecCCCeEEEEEcccceEEeeeccceeeec---cceeeEEeCC--CCCeEEEEecCCeEEEEeCCCCceeeEEec
Q 040370 31 GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVN---GAINQVRYSS--TGGMYVTASKDGAIRLWDGVSANCVRSIVG 105 (228)
Q Consensus 31 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 105 (228)
+..++.++.++.+..+|..+++............. ..+..+.-.| .+..++.++.++.+..+|.++++.......
T Consensus 188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~ 267 (376)
T 3q7m_A 188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL 267 (376)
T ss_dssp TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC
Confidence 45677888899999999999987766543211000 0000111112 246788888899999999999987766543
Q ss_pred ccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC
Q 040370 106 AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT 185 (228)
Q Consensus 106 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 185 (228)
. ....+.. ++..++.++.++.+..+|..+++.+........ ........ .+..++++.. +|.+.++|.++
T Consensus 268 ~----~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~--~~~~l~v~~~-~g~l~~~d~~t 337 (376)
T 3q7m_A 268 G----SVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH-RLLTSPVL--YNGNLVVGDS-EGYLHWINVED 337 (376)
T ss_dssp C----CEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT-SCCCCCEE--ETTEEEEECT-TSEEEEEETTT
T ss_pred C----CCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC-CcccCCEE--ECCEEEEEeC-CCeEEEEECCC
Confidence 2 2233333 366788888899999999999988766542111 11111111 2455565444 69999999999
Q ss_pred cceeEEeecCCCCCcEE-EEeCCCCcEEEEecCCCCEEEeee
Q 040370 186 AEKVAKWSSNHIGAPRW-IEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 186 ~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
++.+..... ....+.. ... .+..|+.++.+|.|..||.
T Consensus 338 G~~~~~~~~-~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 338 GRFVAQQKV-DSSGFQTEPVA--ADGKLLIQAKDGTVYSITR 376 (376)
T ss_dssp CCEEEEEEC-CTTCBCSCCEE--ETTEEEEEBTTSCEEEEEC
T ss_pred CcEEEEEec-CCCcceeCCEE--ECCEEEEEeCCCEEEEEeC
Confidence 998877633 2222221 222 2456788889999999873
No 251
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.00 E-value=1.6e-07 Score=75.27 Aligned_cols=186 Identities=12% Similarity=0.076 Sum_probs=120.7
Q ss_pred CCeEEEEEcccceEEeeeccceee---------------------------eccceeeEEeCCCCCeEEEEecCC-----
Q 040370 40 HPIAHLYDVNTFQCYLSANVPEIS---------------------------VNGAINQVRYSSTGGMYVTASKDG----- 87 (228)
Q Consensus 40 d~~i~vw~~~~~~~~~~~~~~~~~---------------------------~~~~i~~~~~~~~~~~l~~~~~dg----- 87 (228)
+|.|..+|.++|+.+......... .......+++.|+...++.++.++
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~ 256 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR 256 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence 589999999999987766432100 011123478888888888887776
Q ss_pred --------------eEEEEeCCCCceeeEEeccccc-------ceeEEEEECCCCC---EEEEeeCCCeEEEEEccCCee
Q 040370 88 --------------AIRLWDGVSANCVRSIVGAHGT-------AEATSANFTKDQR---FVLSCGKDSTVKLWEVSSGRL 143 (228)
Q Consensus 88 --------------~v~iwd~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~---~l~~~~~d~~i~~wd~~~~~~ 143 (228)
.|.-+|.++++.+-.++..++. .+.....+..+++ .++.++.+|.++++|.++++.
T Consensus 257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (668)
T ss_dssp HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence 3999999999988887653221 2222223333564 688999999999999999998
Q ss_pred EEEEecceee----------eee------------------------eEEEECCCCcEEEEe------------------
Q 040370 144 VKQYLGATHT----------QLR------------------------FQAVFNDTEEFVLSI------------------ 171 (228)
Q Consensus 144 ~~~~~~~~~~----------~~~------------------------~~~~~~~~~~~~~~~------------------ 171 (228)
+......... ..+ ..++++|+...+++.
T Consensus 337 l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~ 416 (668)
T 1kv9_A 337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR 416 (668)
T ss_dssp EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccc
Confidence 7544321100 000 014555655554431
Q ss_pred -----------------eCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 172 -----------------DEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 172 -----------------~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
...+|.|..||..+++.+-+.... .+.....+...+.+++.++.||.++.||..
T Consensus 417 ~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~ 487 (668)
T 1kv9_A 417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSAD 487 (668)
T ss_dssp SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred cccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC--CCCcCceeEeCCCEEEEECCcccchhhhhh
Confidence 112488999999999988776332 233333344467788889999999999853
No 252
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.97 E-value=8.9e-09 Score=76.23 Aligned_cols=129 Identities=9% Similarity=-0.084 Sum_probs=92.1
Q ss_pred eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe----------cCCeEEEEeCCCCceeeEEecccc---
Q 040370 42 IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS----------KDGAIRLWDGVSANCVRSIVGAHG--- 108 (228)
Q Consensus 42 ~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~--- 108 (228)
.|.++|..+++.+..+... ..+ .+.++|++++++++. .++.|.+||+.+++.+.++.....
T Consensus 47 ~vsvID~~t~~v~~~i~vG----~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~ 120 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGA----FLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF 120 (368)
T ss_dssp EEEEEETTTTEEEEEEEEC----TTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC
T ss_pred eEEEEECCCCeEEEEEeCC----CCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccc
Confidence 8899999999988776643 334 799999999888886 368899999999999998865310
Q ss_pred --cceeEEEEECCCCCEEEEeeC--CCeEEE--EEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEE
Q 040370 109 --TAEATSANFTKDQRFVLSCGK--DSTVKL--WEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWD 182 (228)
Q Consensus 109 --~~~i~~~~~~~~~~~l~~~~~--d~~i~~--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d 182 (228)
......+.++|||++++++.. +..+.+ +|+.+ +..+... . . ....|++...+.+.+.|+.+.+.|
T Consensus 121 ~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~--~-~---~~~~p~g~~~~~~~~~dg~~~~vd 191 (368)
T 1mda_H 121 SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA--S-C---FHIHPGAAATHYLGSCPASLAASD 191 (368)
T ss_dssp CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS--S-C---CCCEEEETTEEECCCCTTSCEEEE
T ss_pred ccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC--C-c---eEEccCCCeEEEEEcCCCCEEEEE
Confidence 123457899999999998874 457888 99877 3444321 1 1 112345544444555678888888
Q ss_pred cCC
Q 040370 183 ALT 185 (228)
Q Consensus 183 ~~~ 185 (228)
..+
T Consensus 192 ~~~ 194 (368)
T 1mda_H 192 LAA 194 (368)
T ss_dssp CCS
T ss_pred Ccc
Confidence 876
No 253
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.96 E-value=3.5e-06 Score=62.16 Aligned_cols=197 Identities=9% Similarity=-0.016 Sum_probs=122.2
Q ss_pred CcceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeEEEEeCCC
Q 040370 19 THNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAIRLWDGVS 96 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~ 96 (228)
...+..++|++....|+ +-...+.|..+++............ ......+++.+. ++++++-...+.|.+.++..
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~----~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG 147 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG----LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 147 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS----CSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC----CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC
Confidence 34578899998655554 4456788888888765432222111 234577888875 44555656678999999865
Q ss_pred CceeeEEecccccceeEEEEECCCCCEEEEe-eCC-CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC
Q 040370 97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSC-GKD-STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP 174 (228)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
......+... -.....++++|.+..|+.. ... +.|..+++... ....+.. ........++++|++..++.+...
T Consensus 148 ~~~~~l~~~~--l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~-~~~~~PnGla~d~~~~~lY~aD~~ 223 (349)
T 3v64_C 148 AHRKVLLWQS--LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIAD-THLFWPNGLTIDYAGRRMYWVDAK 223 (349)
T ss_dssp CSCEEEECTT--CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCC-SSCSCEEEEEEETTTTEEEEEETT
T ss_pred CceEEEEeCC--CCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEE-CCCCCcceEEEeCCCCEEEEEECC
Confidence 4333222221 3456889999965555444 444 78888887643 3222211 123345678899888888888877
Q ss_pred CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 175 SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 175 d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
.+.|..+|+..... ..+..........+++ .++.++++-...+.|...+
T Consensus 224 ~~~I~~~~~dG~~~-~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 224 HHVIERANLDGSHR-KAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp TTEEEEEETTSCSC-EEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCCCCce-EEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEE
Confidence 78999999864433 3332333455677887 3455566655666676655
No 254
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.92 E-value=7.9e-07 Score=71.22 Aligned_cols=118 Identities=15% Similarity=0.112 Sum_probs=75.4
Q ss_pred EEEEeC-CCCEEEEecCCC-----------eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-CCeEE
Q 040370 24 SVSFHP-SGDFLLAGTDHP-----------IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK-DGAIR 90 (228)
Q Consensus 24 ~~~~~~-~~~~l~~~~~d~-----------~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~v~ 90 (228)
+.++.| +++.++.|+.+. .+.+||..+++.......+..+ .....++++.+++++++.|+. +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~-~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH-DMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC-CCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCC-CCccccccCCCCCCEEEeCCCCCCceE
Confidence 567777 888888876542 5889999887643222111111 223345778889999999884 46899
Q ss_pred EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEee-CC-----CeEEEEEccCCee
Q 040370 91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCG-KD-----STVKLWEVSSGRL 143 (228)
Q Consensus 91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-----~~i~~wd~~~~~~ 143 (228)
+||..+.+....-.... ...-.+++..++++.++.|+ .+ ..+.+||..+.+.
T Consensus 269 ~yd~~t~~W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp EEEGGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred EecCcCCceeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 99998765433222211 22223455667889888888 34 4689999877653
No 255
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.92 E-value=1.7e-06 Score=65.68 Aligned_cols=197 Identities=14% Similarity=0.128 Sum_probs=119.9
Q ss_pred ceEEEEEeCC--CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC---C-eEEEEeC
Q 040370 21 NVRSVSFHPS--GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD---G-AIRLWDG 94 (228)
Q Consensus 21 ~v~~~~~~~~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g-~v~iwd~ 94 (228)
....++|+|+ ...|+.+...+.|+.++..++........ ......++++++++++++.... . .+...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~-----~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTN-----IGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCC-----CSCEEEEEECTTCCEEEEECCSCTTSEEEEEECG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecC-----CCCccEEEECCCCCEEEEcCCCCcccceEEEEEC
Confidence 4578999984 44455554448899999987775443321 4557899999999944444321 1 2333343
Q ss_pred CCCcee-eEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370 95 VSANCV-RSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID 172 (228)
Q Consensus 95 ~~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
..+... ..+.. ......++++| ++.++++-..++.|+.+|..++.....+...........++++|++..++.+.
T Consensus 215 ~~~~~~~~~~~~---~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 215 ASGFTERLSLCN---ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp GGTTCCEEEEEE---CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred CCCeeccccccc---cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence 222111 11211 23346688999 66666666677889999988776533332111222234689999999888777
Q ss_pred CCCCeEEEEEcCC--cce--eEEeec--C------------CCCCcEEEEe---------CCCCcEEEEecCCCCEEEee
Q 040370 173 EPSNEIVIWDALT--AEK--VAKWSS--N------------HIGAPRWIEH---------SPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 173 ~~d~~i~i~d~~~--~~~--~~~~~~--~------------~~~~v~~~~~---------~~~~~~l~s~~~dg~i~vwd 225 (228)
...+.|+.++... +.. ...+.. + .-.....+++ .+++.++++-...++|+.++
T Consensus 292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 7778999988652 221 111100 0 1224667898 77787777777777888776
No 256
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.88 E-value=8.1e-07 Score=62.01 Aligned_cols=150 Identities=12% Similarity=0.098 Sum_probs=101.9
Q ss_pred cceeeEEeCCCCCeEEEEecCC--eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEE-EeeCCCeEEEEEccCCe
Q 040370 66 GAINQVRYSSTGGMYVTASKDG--AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVL-SCGKDSTVKLWEVSSGR 142 (228)
Q Consensus 66 ~~i~~~~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~ 142 (228)
.....+.|+ ++.++.+.+.+| .|+.+|+++++.+..+.... ...-..++.. ++.|+ ....++.+.+||..+.+
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCC
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCc
Confidence 345778898 666667777766 89999999999998887642 1112234443 44444 44568899999999999
Q ss_pred eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCC-C---CCcEEEEeCCCCcEEEEecCC
Q 040370 143 LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNH-I---GAPRWIEHSPAEAAFITCGTD 218 (228)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~---~~v~~~~~~~~~~~l~s~~~d 218 (228)
.+.++..... ...+ .+++..++.+.+ ++.|.++|..+.+....+.... . ..++.+.|. +|...+..-.+
T Consensus 119 ~~~ti~~~~e---G~gl--t~dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~ 191 (262)
T 3nol_A 119 QVRSFNYDGE---GWGL--THNDQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQT 191 (262)
T ss_dssp EEEEEECSSC---CCCE--EECSSCEEECCS-SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred EEEEEECCCC---ceEE--ecCCCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccC
Confidence 9998875321 1223 246777777766 5899999999998888764321 1 334557775 67666655566
Q ss_pred CCEEEeee
Q 040370 219 RSVRFWKE 226 (228)
Q Consensus 219 g~i~vwd~ 226 (228)
+.|.+.|.
T Consensus 192 ~~I~vIDp 199 (262)
T 3nol_A 192 NKIVRIDP 199 (262)
T ss_dssp SEEEEECT
T ss_pred CeEEEEEC
Confidence 77777664
No 257
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.88 E-value=3.9e-07 Score=73.04 Aligned_cols=189 Identities=12% Similarity=0.088 Sum_probs=116.7
Q ss_pred EEEEeCCCCEEEEecCCC-------------------eEEEEEcccceEEeeeccceee-----eccceeeEEeCCCCC-
Q 040370 24 SVSFHPSGDFLLAGTDHP-------------------IAHLYDVNTFQCYLSANVPEIS-----VNGAINQVRYSSTGG- 78 (228)
Q Consensus 24 ~~~~~~~~~~l~~~~~d~-------------------~i~vw~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~- 78 (228)
.+++.|+...++.++.++ .|..+|.++|+.+...+..... ...+.....+..+|+
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~ 313 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP 313 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence 478888888888887766 4999999999988776642100 012222222223554
Q ss_pred --eEEEEecCCeEEEEeCCCCceeeEEeccc----------cccee------------------------EEEEECCCCC
Q 040370 79 --MYVTASKDGAIRLWDGVSANCVRSIVGAH----------GTAEA------------------------TSANFTKDQR 122 (228)
Q Consensus 79 --~l~~~~~dg~v~iwd~~~~~~~~~~~~~~----------~~~~i------------------------~~~~~~~~~~ 122 (228)
.++.++.+|.++++|.++|+.+....... ...++ ..++++|+..
T Consensus 314 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g 393 (668)
T 1kv9_A 314 RKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG 393 (668)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT
T ss_pred EEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC
Confidence 68899999999999999999875443211 00000 1256777666
Q ss_pred EEEEe------------------------------------eCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCc
Q 040370 123 FVLSC------------------------------------GKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEE 166 (228)
Q Consensus 123 ~l~~~------------------------------------~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (228)
.++.. ..+|.|..||+.+++.+-+..... ..........+.
T Consensus 394 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~---~~~~~~~~t~gg 470 (668)
T 1kv9_A 394 LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT---HWNGGTLSTAGN 470 (668)
T ss_dssp EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS---SCCCCEEEETTT
T ss_pred EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC---CCcCceeEeCCC
Confidence 55431 134789999999999887765321 112222233566
Q ss_pred EEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc-EEEEec
Q 040370 167 FVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA-AFITCG 216 (228)
Q Consensus 167 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~ 216 (228)
.++.+ ..|+.++.||.++++.+..+..+....-.-+.+..+|+ +++.++
T Consensus 471 ~vf~g-~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 471 LVFQG-TAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp EEEEE-CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EEEEE-CCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 67765 45899999999999999887443211112233334565 444443
No 258
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.85 E-value=2.9e-06 Score=61.76 Aligned_cols=185 Identities=12% Similarity=0.201 Sum_probs=113.6
Q ss_pred CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC----CC---eEEE-Eec--CCeEEEEeC--CCC
Q 040370 30 SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST----GG---MYVT-ASK--DGAIRLWDG--VSA 97 (228)
Q Consensus 30 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~---~l~~-~~~--dg~v~iwd~--~~~ 97 (228)
...+++.....+-+.+||+ .|+.+..+. .+.++.+..-|+ |+ ++++ .-. +++|.+|++ .++
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~------~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~ 111 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYN------TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG 111 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEEC------CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEcc------CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC
Confidence 3456666667788999999 777766654 234555555442 22 2233 333 578999966 333
Q ss_pred ceeeEEecc-----cccceeEEEEE--CCC-CC-EEEEeeCCCeEEEEEcc-------CCeeEEEEecceeeeeeeEEEE
Q 040370 98 NCVRSIVGA-----HGTAEATSANF--TKD-QR-FVLSCGKDSTVKLWEVS-------SGRLVKQYLGATHTQLRFQAVF 161 (228)
Q Consensus 98 ~~~~~~~~~-----~~~~~i~~~~~--~~~-~~-~l~~~~~d~~i~~wd~~-------~~~~~~~~~~~~~~~~~~~~~~ 161 (228)
. +..+... .....+..+++ +|. +. ++++...+|.+..|++. +.+.++++.. ......+..
T Consensus 112 ~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~Egcvv 187 (355)
T 3amr_A 112 T-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAA 187 (355)
T ss_dssp C-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEE
T ss_pred c-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEE
Confidence 3 4444210 11145666777 774 43 68888889999999983 3355666654 234556777
Q ss_pred CCCCcEEEEeeCCCCeEEEEEcC-----CcceeEEeecCCC-CCcEEEEe--CCCCc-EEEEec-CCCCEEEeee
Q 040370 162 NDTEEFVLSIDEPSNEIVIWDAL-----TAEKVAKWSSNHI-GAPRWIEH--SPAEA-AFITCG-TDRSVRFWKE 226 (228)
Q Consensus 162 ~~~~~~~~~~~~~d~~i~i~d~~-----~~~~~~~~~~~~~-~~v~~~~~--~~~~~-~l~s~~-~dg~i~vwd~ 226 (228)
.+....++++-. +..|..++.+ +++.+.....++. ..+..|++ .++++ +|++++ .+++..+||.
T Consensus 188 Dd~~g~Lyv~eE-d~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 188 DDEYGRLYIAEE-DEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR 261 (355)
T ss_dssp ETTTTEEEEEET-TTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred cCCCCeEEEecc-cceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence 788888888666 5667777754 2334444322333 36788887 44544 555555 6778999986
No 259
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.84 E-value=3.1e-06 Score=59.19 Aligned_cols=136 Identities=7% Similarity=-0.053 Sum_probs=98.1
Q ss_pred CCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccc
Q 040370 30 SGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHG 108 (228)
Q Consensus 30 ~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 108 (228)
+++.|. ....++.+.+||.++.+.+..+.... .-..++ ++++.|+.+..++.|.++|.++.+....+.....
T Consensus 104 ~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~-----eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~ 176 (268)
T 3nok_A 104 DGERLYQLTWTEGLLFTWSGMPPQRERTTRYSG-----EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR 176 (268)
T ss_dssp CSSCEEEEESSSCEEEEEETTTTEEEEEEECSS-----CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEET
T ss_pred eCCEEEEEEccCCEEEEEECCcCcEEEEEeCCC-----ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC
Confidence 444444 45568999999999999888776531 113444 4678888887889999999999998888765332
Q ss_pred cc---eeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce-----------eeeeeeEEEECCCCcEEEEeeC
Q 040370 109 TA---EATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT-----------HTQLRFQAVFNDTEEFVLSIDE 173 (228)
Q Consensus 109 ~~---~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
.. .++.+.|. +|+..+....+..|.+.|.++++.+..+.... .......++++|+++.++++|.
T Consensus 177 g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 177 GQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 22 34566776 67666665578899999999999988876421 1134577999999888888775
No 260
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.81 E-value=7.5e-06 Score=62.17 Aligned_cols=154 Identities=8% Similarity=0.089 Sum_probs=100.3
Q ss_pred ceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-CC----eEEEEeC
Q 040370 21 NVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK-DG----AIRLWDG 94 (228)
Q Consensus 21 ~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg----~v~iwd~ 94 (228)
....++++| ++..|+++...+.|+.+|++.+........ ......++|+++++.|+.+.. ++ .+...+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~-----~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG-----LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC-----CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC-----CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence 457899998 455666665558899999987664433221 456789999999996665554 22 3444443
Q ss_pred CCCcee--eEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370 95 VSANCV--RSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI 171 (228)
Q Consensus 95 ~~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
.+... ..+.. ......++++| ++..+++-..++.|..+|...+......... .......++++|++++++.+
T Consensus 213 -~g~~~~~~~l~~---~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~-~~~~P~gia~~pdG~~lyv~ 287 (430)
T 3tc9_A 213 -ESGFKVITELTK---GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ-DSGWEFHIQFHPSGNYAYIV 287 (430)
T ss_dssp -GGTSCSEEEEEE---CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS-SSSCCEEEEECTTSSEEEEE
T ss_pred -CCceeeeeeecc---CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC-CCCcceeEEEcCCCCEEEEE
Confidence 33222 22222 22346788999 6776666667789999999876542222211 12345679999999988877
Q ss_pred eCCCCeEEEEEcC
Q 040370 172 DEPSNEIVIWDAL 184 (228)
Q Consensus 172 ~~~d~~i~i~d~~ 184 (228)
....+.|..++..
T Consensus 288 d~~~~~I~~~~~d 300 (430)
T 3tc9_A 288 VVNQHYILRSDYD 300 (430)
T ss_dssp ETTTTEEEEEEEE
T ss_pred ECCCCEEEEEeCC
Confidence 7777999998865
No 261
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.79 E-value=1.6e-06 Score=68.18 Aligned_cols=186 Identities=9% Similarity=0.074 Sum_probs=113.9
Q ss_pred EEEEeCCCCEEEEecCC----------------CeEEEEEcccceEEeeecccee------eeccceeeEEeCCCCC---
Q 040370 24 SVSFHPSGDFLLAGTDH----------------PIAHLYDVNTFQCYLSANVPEI------SVNGAINQVRYSSTGG--- 78 (228)
Q Consensus 24 ~~~~~~~~~~l~~~~~d----------------~~i~vw~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~--- 78 (228)
.+++.++...++.++.+ +.|..+|.++++.+...+.... ....++. +...++|+
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~ 317 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTP 317 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEE
Confidence 35677766666665532 3699999999998777654310 0012221 22224664
Q ss_pred eEEEEecCCeEEEEeCCCCceeeEEecccc-----------ccee--------------------------EEEEECCCC
Q 040370 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHG-----------TAEA--------------------------TSANFTKDQ 121 (228)
Q Consensus 79 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----------~~~i--------------------------~~~~~~~~~ 121 (228)
.++.++.+|.+.++|.++++.+........ ..++ ..++++|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 577889999999999999988766643210 0111 235677777
Q ss_pred CEEEEee-------------------------------------CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCC
Q 040370 122 RFVLSCG-------------------------------------KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT 164 (228)
Q Consensus 122 ~~l~~~~-------------------------------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (228)
.+++... .++.|..||+.+++.+-++.... ..........
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~---~~~~~~~~t~ 474 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF---AAWGGTLYTK 474 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS---CCCSBCEEET
T ss_pred CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC---CccceeEEEC
Confidence 7666553 35789999999998877765321 1111111223
Q ss_pred CcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEE
Q 040370 165 EEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFIT 214 (228)
Q Consensus 165 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 214 (228)
+..++++ ..|+.++.+|.++++.+.++..+....-.-+.+..+++.++.
T Consensus 475 gg~v~~g-~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 475 GGLVWYA-TLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp TTEEEEE-CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCEEEEE-cCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 4556664 458999999999999998875443222222345567765443
No 262
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.79 E-value=2.1e-06 Score=65.17 Aligned_cols=153 Identities=9% Similarity=0.034 Sum_probs=96.8
Q ss_pred ceeeEEeCC-CCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC-C----eEEEEEccC
Q 040370 67 AINQVRYSS-TGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-S----TVKLWEVSS 140 (228)
Q Consensus 67 ~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~----~i~~wd~~~ 140 (228)
....++++| ++..|+.+...+.|+.+|+..+........ ......+++++++++|+.+... + .+.+++. .
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~---~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG---LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-E 213 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC---CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-G
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC---CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-C
Confidence 457889998 455566666558899999877654443332 4567899999999966666542 2 3444443 3
Q ss_pred CeeE--EEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcE-EEEecC
Q 040370 141 GRLV--KQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAA-FITCGT 217 (228)
Q Consensus 141 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~ 217 (228)
+... ..+. .......++++|++..++++...++.|..++...+................++|+|++++ +++-..
T Consensus 214 g~~~~~~~l~---~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~ 290 (430)
T 3tc9_A 214 SGFKVITELT---KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN 290 (430)
T ss_dssp GTSCSEEEEE---ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred Cceeeeeeec---cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence 3222 2222 122345677888555566656557899999987665422222223345789999999994 555556
Q ss_pred CCCEEEeee
Q 040370 218 DRSVRFWKE 226 (228)
Q Consensus 218 dg~i~vwd~ 226 (228)
.+.|..++.
T Consensus 291 ~~~I~~~~~ 299 (430)
T 3tc9_A 291 QHYILRSDY 299 (430)
T ss_dssp TTEEEEEEE
T ss_pred CCEEEEEeC
Confidence 778888764
No 263
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.78 E-value=2.5e-06 Score=67.29 Aligned_cols=185 Identities=11% Similarity=0.117 Sum_probs=112.9
Q ss_pred EEEEeCCCCEEEEecC--------------------C----CeEEEEEcccceEEeeeccceee------eccceeeEEe
Q 040370 24 SVSFHPSGDFLLAGTD--------------------H----PIAHLYDVNTFQCYLSANVPEIS------VNGAINQVRY 73 (228)
Q Consensus 24 ~~~~~~~~~~l~~~~~--------------------d----~~i~vw~~~~~~~~~~~~~~~~~------~~~~i~~~~~ 73 (228)
.+++.|+...++.+.. | +.|..+|.++|+.+...+..... ...++. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 3567777777776552 2 68999999999988776542100 011221 122
Q ss_pred C-CCCC---eEEEEecCCeEEEEeCCCCceeeEEecccc-----------ccee--------------------------
Q 040370 74 S-STGG---MYVTASKDGAIRLWDGVSANCVRSIVGAHG-----------TAEA-------------------------- 112 (228)
Q Consensus 74 ~-~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----------~~~i-------------------------- 112 (228)
. .+|+ .++.++.+|.++++|.++++.+........ ..++
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~ 408 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF 408 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence 1 3564 788899999999999999988766554310 0000
Q ss_pred ------EEEEECCCCCEEEEee---------------------------------CCCeEEEEEccCCeeEEEEecceee
Q 040370 113 ------TSANFTKDQRFVLSCG---------------------------------KDSTVKLWEVSSGRLVKQYLGATHT 153 (228)
Q Consensus 113 ------~~~~~~~~~~~l~~~~---------------------------------~d~~i~~wd~~~~~~~~~~~~~~~~ 153 (228)
..++++|+...+++.. .+|.|.-||+.+++.+-+.....
T Consensus 409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-- 486 (582)
T 1flg_A 409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-- 486 (582)
T ss_dssp TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--
T ss_pred ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--
Confidence 1345666555554432 25789999999998876665321
Q ss_pred eeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEE
Q 040370 154 QLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFI 213 (228)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 213 (228)
..........+..++. +..|+.++.||.++++.+-++..+......-+.+..+|++.+
T Consensus 487 -~~~~g~~~tagglvf~-g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 487 -PLWAGVLATAGNLVFT-GTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp -CCCSCCEEETTTEEEE-ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred -CCcccceEeCCCEEEE-ECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 1111111123556666 445899999999999999888543322222355656776433
No 264
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.78 E-value=6.7e-06 Score=59.40 Aligned_cols=172 Identities=5% Similarity=0.059 Sum_probs=114.8
Q ss_pred eEEEeecCcceEEEEEeCCCCEEEEec-CCCeEEEEEcccceEEeeeccce----eeeccceeeEEe---CCCCCeEEEE
Q 040370 12 AFRVIQDTHNVRSVSFHPSGDFLLAGT-DHPIAHLYDVNTFQCYLSANVPE----ISVNGAINQVRY---SSTGGMYVTA 83 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~----~~~~~~i~~~~~---~~~~~~l~~~ 83 (228)
.+.+.....---+++|++....|..++ ..+.|..|+...+..... .... +.....+..+.| .|+++++++.
T Consensus 5 ~i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~ 83 (334)
T 2p9w_A 5 QIDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVM 83 (334)
T ss_dssp EEEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEE
T ss_pred eEEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEE
Confidence 344444445566789988656665555 789999999976543332 2211 110224578999 6887776654
Q ss_pred e-------------cCCeEEEEeCC---CCceeeEEeccc-----------ccceeEEEEECCCCCEEEEeeCC-CeEEE
Q 040370 84 S-------------KDGAIRLWDGV---SANCVRSIVGAH-----------GTAEATSANFTKDQRFVLSCGKD-STVKL 135 (228)
Q Consensus 84 ~-------------~dg~v~iwd~~---~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~~d-~~i~~ 135 (228)
. .+..|..+|+. +++.+....... .......++..++|+..++++.. +.|..
T Consensus 84 ~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~r 163 (334)
T 2p9w_A 84 KNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIAR 163 (334)
T ss_dssp EETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEE
T ss_pred cccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEE
Confidence 3 26789999999 787766554311 12357899999999999999888 88888
Q ss_pred EEccCCeeEEEEecce----eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCc
Q 040370 136 WEVSSGRLVKQYLGAT----HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA 186 (228)
Q Consensus 136 wd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 186 (228)
.+... +.+..+.... .......+++.|++..+++..+ .+.+..+|+++.
T Consensus 164 V~pdG-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~p 216 (334)
T 2p9w_A 164 VSADG-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKP 216 (334)
T ss_dssp ECTTS-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSS
T ss_pred EeCCC-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCC
Confidence 88653 3333322111 1122457899999999999888 799999998853
No 265
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.78 E-value=2e-06 Score=67.65 Aligned_cols=192 Identities=9% Similarity=-0.025 Sum_probs=118.5
Q ss_pred CEEEEecC------CCeEEEEEcccceEEeeeccceeee---------------------------------cc-ceeeE
Q 040370 32 DFLLAGTD------HPIAHLYDVNTFQCYLSANVPEISV---------------------------------NG-AINQV 71 (228)
Q Consensus 32 ~~l~~~~~------d~~i~vw~~~~~~~~~~~~~~~~~~---------------------------------~~-~i~~~ 71 (228)
..+++++. ++.|..+|.++++.+.......... .. .-..+
T Consensus 161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~ 240 (571)
T 2ad6_A 161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY 240 (571)
T ss_dssp TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence 45555544 7899999999999877654321100 00 00235
Q ss_pred EeCCCCCeEEEEecC----------------CeEEEEeCCCCceeeEEecccc--------cceeEEEEECCCCC---EE
Q 040370 72 RYSSTGGMYVTASKD----------------GAIRLWDGVSANCVRSIVGAHG--------TAEATSANFTKDQR---FV 124 (228)
Q Consensus 72 ~~~~~~~~l~~~~~d----------------g~v~iwd~~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~---~l 124 (228)
++.++...++.+..+ +.|..+|.++++.+-.++..++ ..++ -+....+++ .+
T Consensus 241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v 319 (571)
T 2ad6_A 241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLL 319 (571)
T ss_dssp EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEE
T ss_pred EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEE
Confidence 566666666666532 3699999999998877765321 1122 122224664 57
Q ss_pred EEeeCCCeEEEEEccCCeeEEEEeccee-----------eeee--------------------------eEEEECCCCcE
Q 040370 125 LSCGKDSTVKLWEVSSGRLVKQYLGATH-----------TQLR--------------------------FQAVFNDTEEF 167 (228)
Q Consensus 125 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~-----------~~~~--------------------------~~~~~~~~~~~ 167 (228)
+.++.+|.++++|.++++.+........ ..++ ..++++|+...
T Consensus 320 ~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~ 399 (571)
T 2ad6_A 320 SHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRT 399 (571)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTE
T ss_pred EEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCE
Confidence 7888999999999999988776543210 0000 12456666666
Q ss_pred EEEee------------------------------------CCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcE
Q 040370 168 VLSID------------------------------------EPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAA 211 (228)
Q Consensus 168 ~~~~~------------------------------------~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (228)
+++.. ..++.+..||..+++.+-+.... ..+....+...+..
T Consensus 400 ~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~ 477 (571)
T 2ad6_A 400 LYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTKGGL 477 (571)
T ss_dssp EEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTE
T ss_pred EEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC--CCccceeEEECCCE
Confidence 55532 13589999999999988776332 22222222234566
Q ss_pred EEEecCCCCEEEeee
Q 040370 212 FITCGTDRSVRFWKE 226 (228)
Q Consensus 212 l~s~~~dg~i~vwd~ 226 (228)
++.++.||.+..+|.
T Consensus 478 v~~g~~dg~l~a~D~ 492 (571)
T 2ad6_A 478 VWYATLDGYLKALDN 492 (571)
T ss_dssp EEEECTTSEEEEEET
T ss_pred EEEEcCCCeEEEEEC
Confidence 777889999999985
No 266
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.75 E-value=1.5e-05 Score=58.83 Aligned_cols=195 Identities=7% Similarity=-0.069 Sum_probs=117.1
Q ss_pred cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCCeEEEEeCCCCc
Q 040370 20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDGAIRLWDGVSAN 98 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~ 98 (228)
...+|.+..++ .+|+.+. ...|+..++........... ...+..++|++.++.|+ +-...+.|..+++....
T Consensus 34 d~~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~~~~~~~-----~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~ 106 (349)
T 3v64_C 34 DRRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLNN-----LENAIALDFHHRRELVFWSDVTLDRILRANLNGSN 106 (349)
T ss_dssp TSSCEEESSSC-CEEEEEC-BSCEEEECTTSCCEEEEECS-----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCcccccccC-ceeEeec-ccceEEEeCCCCeeEEeecC-----CCceEEEEEeccccEEEEEeccCCceEEEecCCCC
Confidence 34455555553 3444443 34577777766543332221 34578899997655555 44567889999987655
Q ss_pred eeeEEecccccceeEEEEECCCC-CEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC-C
Q 040370 99 CVRSIVGAHGTAEATSANFTKDQ-RFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS-N 176 (228)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~ 176 (228)
....+... ......+++.+.+ +.+++-...+.|.+.++........... .......+++.|.+..++.+.... +
T Consensus 107 ~~~~~~~~--~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~--~l~~P~~iavdp~~g~ly~td~~~~~ 182 (349)
T 3v64_C 107 VEEVVSTG--LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ--SLEKPRAIALHPMEGTIYWTDWGNTP 182 (349)
T ss_dssp CEEEECSS--CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT--TCSCEEEEEEETTTTEEEEEECSSSC
T ss_pred ceEEEeCC--CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeC--CCCCcceEEEecCcCeEEEeccCCCC
Confidence 43333221 2345678888754 4455555678899999865432222221 223456788888888777777655 7
Q ss_pred eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEE-EecCCCCEEEeee
Q 040370 177 EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFI-TCGTDRSVRFWKE 226 (228)
Q Consensus 177 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~ 226 (228)
.|..+++.... ...+........+.++++|++..|+ +-...+.|..+++
T Consensus 183 ~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~ 232 (349)
T 3v64_C 183 RIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 232 (349)
T ss_dssp EEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 89999876433 3333223345678999998655554 4445566777663
No 267
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.75 E-value=1.9e-05 Score=57.46 Aligned_cols=202 Identities=10% Similarity=0.029 Sum_probs=122.7
Q ss_pred eecCcceEEEEEeCCCCEEE-EecCCCeEEEEEcccc---eEEeeeccceeeeccceeeEEeCCCC-CeEEEEecCCeEE
Q 040370 16 IQDTHNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTF---QCYLSANVPEISVNGAINQVRYSSTG-GMYVTASKDGAIR 90 (228)
Q Consensus 16 ~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~ 90 (228)
......+..++|++.+..|+ +-..++.|..+++... ......... . ......+++.+.+ ++.++-...+.|.
T Consensus 26 ~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~--~-~~~p~glavd~~~~~ly~~d~~~~~I~ 102 (316)
T 1ijq_A 26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--D-IQAPDGLAVDWIHSNIYWTDSVLGTVS 102 (316)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS--S-CSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC--C-CCCcCEEEEeecCCeEEEEECCCCEEE
Confidence 33455678999998665554 5556789999998751 111111100 0 2345788888644 4445556778999
Q ss_pred EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC--CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEE
Q 040370 91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD--STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFV 168 (228)
Q Consensus 91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (228)
+.++........+... ......++++|.+..|+.+... +.|...++. +.....+... .-.....+++++++..+
T Consensus 103 ~~~~~g~~~~~~~~~~--~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~-~~~~P~gla~d~~~~~l 178 (316)
T 1ijq_A 103 VADTKGVKRKTLFREN--GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTE-NIQWPNGITLDLLSGRL 178 (316)
T ss_dssp EEETTSSSEEEEEECT--TCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECS-SCSCEEEEEEETTTTEE
T ss_pred EEeCCCCceEEEEECC--CCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEEC-CCCCceEEEEeccCCEE
Confidence 9998754333323221 3456889999966655555432 688888875 3333333211 23345678899888888
Q ss_pred EEeeCCCCeEEEEEcCCcceeEEeec--CCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 169 LSIDEPSNEIVIWDALTAEKVAKWSS--NHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 169 ~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
+.+....+.|..+|+.... ...+.. ........+++. .+.++++-...+.|..++.
T Consensus 179 Y~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 179 YWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp EEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred EEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeC
Confidence 8888777899999986433 233322 123446778775 4566666666777777663
No 268
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.74 E-value=2.7e-05 Score=58.59 Aligned_cols=200 Identities=9% Similarity=0.007 Sum_probs=122.5
Q ss_pred ecCcceEEEEEeCCCCEEE-EecCCCeEEEEEcccce----EEeeeccceeeeccceeeEEeCC-CCCeEEEEecCCeEE
Q 040370 17 QDTHNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQ----CYLSANVPEISVNGAINQVRYSS-TGGMYVTASKDGAIR 90 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~ 90 (228)
.....+..++|++.+..|+ +-...+.|+.+++.... ........ ......+++.+ .+++.++-...+.|.
T Consensus 109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~----~~~p~glavD~~~~~lY~~d~~~~~I~ 184 (400)
T 3p5b_L 109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD----IQAPDGLAVDWIHSNIYWTDSVLGTVS 184 (400)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS----CSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC----CCCcccEEEEecCCceEEEECCCCeEE
Confidence 3456788999998655555 44567788888876522 11111111 34567888887 455555666678999
Q ss_pred EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC--CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEE
Q 040370 91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK--DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFV 168 (228)
Q Consensus 91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (228)
+.+++.......+... ......++++|.+.+|+.... .+.|...++... ....+... .-.....+++++.+..+
T Consensus 185 ~~~~~g~~~~~l~~~~--~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~-~~~~~~~~-~l~~P~glavd~~~~~l 260 (400)
T 3p5b_L 185 VADTKGVKRKTLFREN--GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTE-NIQWPNGITLDLLSGRL 260 (400)
T ss_dssp EECTTTCSEEEEEECS--SCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC-SCEEEECS-SCSCEEEEEEETTTTEE
T ss_pred EEeCCCCceEEEEeCC--CCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC-ccEEEEEC-CCCceEEEEEEeCCCEE
Confidence 9998755443333322 345689999996666655542 367999988643 33333211 22455778899888888
Q ss_pred EEeeCCCCeEEEEEcCCcceeEEeec-CCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 169 LSIDEPSNEIVIWDALTAEKVAKWSS-NHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 169 ~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
+.+....+.|..+|+........... ........+++. .+.++++-...+.|..+|
T Consensus 261 Y~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~ 317 (400)
T 3p5b_L 261 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSAN 317 (400)
T ss_dssp EEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEE
T ss_pred EEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEE
Confidence 88887778999999865433222211 223445677773 445566666667777766
No 269
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.73 E-value=1.1e-05 Score=61.78 Aligned_cols=160 Identities=13% Similarity=0.145 Sum_probs=99.8
Q ss_pred ceEEEEEeC-CCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEe-------CCCCCeEEEEecCC----
Q 040370 21 NVRSVSFHP-SGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRY-------SSTGGMYVTASKDG---- 87 (228)
Q Consensus 21 ~v~~~~~~~-~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~l~~~~~dg---- 87 (228)
....|+|+| +...|+ +-...+.|++.|++.+............ ......++| +++++.|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~-~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIP-TNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSS-CSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccc-cCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 467899998 344444 4444567889998887765544332111 345789999 99998666665443
Q ss_pred ---eEEEEeCCC-Ccee-----eEEecccccceeEEEEECCC-CCEEEEeeCCCeEEEEEcc-------CCee-------
Q 040370 88 ---AIRLWDGVS-ANCV-----RSIVGAHGTAEATSANFTKD-QRFVLSCGKDSTVKLWEVS-------SGRL------- 143 (228)
Q Consensus 88 ---~v~iwd~~~-~~~~-----~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~-------~~~~------- 143 (228)
.|.+.+... +... ..+.. ......++++|+ +.++++-..++.|..+|+. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~---~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA---YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE---ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred cCceEEEEecCCCCceeecccceeecc---CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence 266665333 2221 22222 223457788994 5555566677889999997 4543
Q ss_pred ----EEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcC
Q 040370 144 ----VKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL 184 (228)
Q Consensus 144 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~ 184 (228)
...+...........++++|++..++.+......|+.++..
T Consensus 296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 11221111233457899999999877777767899996653
No 270
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.73 E-value=7.8e-06 Score=56.58 Aligned_cols=152 Identities=9% Similarity=0.031 Sum_probs=100.9
Q ss_pred ccceeeEEeCCCCCeEEEEecCC--eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe
Q 040370 65 NGAINQVRYSSTGGMYVTASKDG--AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR 142 (228)
Q Consensus 65 ~~~i~~~~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 142 (228)
......+.|++ +.++.+.+.+| .|+.+|+.+++....+.... ...-..+++. .++.......++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCc
Confidence 44567889986 55666666654 89999999999998887642 1111234443 23444455678999999999999
Q ss_pred eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecC-CC---CCcEEEEeCCCCcEEEEecCC
Q 040370 143 LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN-HI---GAPRWIEHSPAEAAFITCGTD 218 (228)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~---~~v~~~~~~~~~~~l~s~~~d 218 (228)
.+.++..... ...++ +++..++++.+ ++.|.++|..+.+...++... +. ..++.+.+. +|+..+..-.+
T Consensus 97 ~~~ti~~~~~---Gwglt--~dg~~L~vSdg-s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 97 PRARFRYPGE---GWALT--SDDSHLYMSDG-TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp EEEEEECSSC---CCEEE--ECSSCEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTT
T ss_pred EEEEEeCCCC---ceEEe--eCCCEEEEECC-CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCC
Confidence 9999875422 23333 45677777766 689999999999888776432 11 234556654 56655555456
Q ss_pred CCEEEeee
Q 040370 219 RSVRFWKE 226 (228)
Q Consensus 219 g~i~vwd~ 226 (228)
..|.+-|.
T Consensus 170 ~~I~vIDp 177 (243)
T 3mbr_X 170 SRIARIDP 177 (243)
T ss_dssp TEEEEECT
T ss_pred CeEEEEEC
Confidence 66666654
No 271
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.71 E-value=2.6e-05 Score=56.73 Aligned_cols=198 Identities=9% Similarity=-0.015 Sum_probs=122.1
Q ss_pred cceEEEEEeCCCC-EEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeEEEEeCCCC
Q 040370 20 HNVRSVSFHPSGD-FLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAIRLWDGVSA 97 (228)
Q Consensus 20 ~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~ 97 (228)
....+++|++.+. .+.+-...+.|..+++........... .. -.....+++.+. ++++++-...+.|.+.++...
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~--~~-l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~ 111 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV--SG-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS 111 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE--EC-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc--CC-CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC
Confidence 4567899998544 445556678898998876531111100 01 234677888874 455555566789999998644
Q ss_pred ceeeEEecccccceeEEEEECCCCCEEEEee--CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC
Q 040370 98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCG--KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS 175 (228)
Q Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 175 (228)
. ...+.... ......+++.|.+..|+.+. ..+.|...++.. .....+... .-.....+++++++..++.+....
T Consensus 112 ~-~~~l~~~~-~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~-~l~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 112 L-RKVLFWQE-LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINS-EIYWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp S-CEEEECSS-CSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECS-SCSCEEEEEEETTTTEEEEEETTT
T ss_pred c-EEEEEeCC-CCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEEC-CCCCccEEEEeccCCEEEEEECCC
Confidence 3 33332211 34568899998666665554 357888888753 333333211 223456889999888888888878
Q ss_pred CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 176 NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 176 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
+.|..+|+.... ...+..........+++. .+.++++-...+.|..++.
T Consensus 188 ~~I~~~d~dG~~-~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 188 NFIHKSNLDGTN-RQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNK 236 (318)
T ss_dssp TEEEEEETTSCS-CEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred CEEEEEcCCCCc-eEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEEC
Confidence 999999986433 333323344556777775 3455555556677776664
No 272
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.68 E-value=7.4e-06 Score=64.70 Aligned_cols=183 Identities=10% Similarity=0.080 Sum_probs=111.5
Q ss_pred EEEEeCCCCEEEEecCC----------------CeEEEEEcccceEEeeeccceee------eccceeeEEeC-CCC---
Q 040370 24 SVSFHPSGDFLLAGTDH----------------PIAHLYDVNTFQCYLSANVPEIS------VNGAINQVRYS-STG--- 77 (228)
Q Consensus 24 ~~~~~~~~~~l~~~~~d----------------~~i~vw~~~~~~~~~~~~~~~~~------~~~~i~~~~~~-~~~--- 77 (228)
.+++.++...++.+..+ +.|..+|.++|+.+..++..... ...++. +... .+|
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~ 323 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR 323 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence 35666777777777655 38999999999988776653110 011121 2222 456
Q ss_pred CeEEEEecCCeEEEEeCCCCceeeEEeccc-----------cccee--------------------------EEEEECCC
Q 040370 78 GMYVTASKDGAIRLWDGVSANCVRSIVGAH-----------GTAEA--------------------------TSANFTKD 120 (228)
Q Consensus 78 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-----------~~~~i--------------------------~~~~~~~~ 120 (228)
..++.++.+|.+.+.|.++++.+....... ...++ ..++++|+
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~ 403 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK 403 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred EEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCC
Confidence 467778999999999999999876654321 01111 23456666
Q ss_pred CCEEEEe---------------------------------e------CCCeEEEEEccCCeeEEEEecceeeeeeeEEEE
Q 040370 121 QRFVLSC---------------------------------G------KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVF 161 (228)
Q Consensus 121 ~~~l~~~---------------------------------~------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 161 (228)
..++++. + .+|.+.-||+.+++.+-+..... ....-..
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~---~~~~g~~ 480 (599)
T 1w6s_A 404 RELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF---AVWGGTM 480 (599)
T ss_dssp TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS---CCCSBCE
T ss_pred CCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC---CccCcce
Confidence 5554432 1 34789999999998877664211 1111111
Q ss_pred CCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcE
Q 040370 162 NDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAA 211 (228)
Q Consensus 162 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (228)
...+..++.+ ..|+.++.||.++|+.+-++..+......-+.+..+|++
T Consensus 481 ~tagg~vf~g-t~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 481 ATAGDLVFYG-TLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp EETTTEEEEE-CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred EecCCEEEEE-CCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence 1245566664 458999999999999998874433222233455557764
No 273
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.66 E-value=1.1e-05 Score=63.68 Aligned_cols=137 Identities=9% Similarity=0.016 Sum_probs=86.0
Q ss_pred CeEEEEeCCCCceeeEEeccccc--------ceeEEEEEC-CCCC---EEEEeeCCCeEEEEEccCCeeEEEEecceee-
Q 040370 87 GAIRLWDGVSANCVRSIVGAHGT--------AEATSANFT-KDQR---FVLSCGKDSTVKLWEVSSGRLVKQYLGATHT- 153 (228)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~~~~--------~~i~~~~~~-~~~~---~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~- 153 (228)
+.|.-+|.++++.+-.++..++. .++. +... .+++ .++.++.+|.++++|.++++.+..+......
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 68999999999998887653221 1222 2222 4563 7888999999999999999987765432100
Q ss_pred ----------eee--------------------------------eEEEECCCCcEEEEee-------------------
Q 040370 154 ----------QLR--------------------------------FQAVFNDTEEFVLSID------------------- 172 (228)
Q Consensus 154 ----------~~~--------------------------------~~~~~~~~~~~~~~~~------------------- 172 (228)
..+ ..++++|....+++..
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 000 0234455544444321
Q ss_pred -------------CCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 173 -------------EPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 173 -------------~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
..+|.|..||+.+++.+-+..... ++..-.....+.+++.++.||.++.||.
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~ 514 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDA 514 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEET
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEEC
Confidence 125889999999999887663322 2221111224667788999999999985
No 274
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.66 E-value=2.9e-05 Score=56.62 Aligned_cols=169 Identities=12% Similarity=0.186 Sum_probs=106.5
Q ss_pred cceEEEEEeCC----CC---EEEEec-C--CCeEEEEEcc--cceEEeeecc---ceeeeccceeeEEe--CCC-CC-eE
Q 040370 20 HNVRSVSFHPS----GD---FLLAGT-D--HPIAHLYDVN--TFQCYLSANV---PEISVNGAINQVRY--SST-GG-MY 80 (228)
Q Consensus 20 ~~v~~~~~~~~----~~---~l~~~~-~--d~~i~vw~~~--~~~~~~~~~~---~~~~~~~~i~~~~~--~~~-~~-~l 80 (228)
+.++.+..-|+ ++ ++++.. . +++|.+|++. +++ +..... +...-...+..+++ +|. ++ ++
T Consensus 68 g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~ya 146 (355)
T 3amr_A 68 GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYA 146 (355)
T ss_dssp SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEE
T ss_pred CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEE
Confidence 56777777663 22 233333 3 5799999774 333 222211 11110156777887 774 44 68
Q ss_pred EEEecCCeEEEEeCC-------CCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEcc-----CCeeEEEEe
Q 040370 81 VTASKDGAIRLWDGV-------SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVS-----SGRLVKQYL 148 (228)
Q Consensus 81 ~~~~~dg~v~iwd~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~-----~~~~~~~~~ 148 (228)
++..++|.+..|++. +.+.++++.. ...+..+...+....|+.+-++..|..+|.+ +++.+..+.
T Consensus 147 fV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~ 223 (355)
T 3amr_A 147 MVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD 223 (355)
T ss_dssp EEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS
T ss_pred EEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec
Confidence 888899999999883 3355677766 4567888899988899999999888888855 344444432
Q ss_pred cceeeeeeeEEEE--CCCCc-EEEEeeCCCCeEEEEEcC-CcceeEEe
Q 040370 149 GATHTQLRFQAVF--NDTEE-FVLSIDEPSNEIVIWDAL-TAEKVAKW 192 (228)
Q Consensus 149 ~~~~~~~~~~~~~--~~~~~-~~~~~~~~d~~i~i~d~~-~~~~~~~~ 192 (228)
...-...+..+.. .++++ ++++++..++...+||.. +.+.+..+
T Consensus 224 ~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 224 GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 2111112333433 45555 888888768999999986 55666665
No 275
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.65 E-value=2.1e-06 Score=69.82 Aligned_cols=154 Identities=9% Similarity=0.028 Sum_probs=95.4
Q ss_pred ceeeEEeC-CCCCeEEEEec-CC----eEEEEeCCCC-ceeeEEecccccceeEEEEECCCCCEEEEeeCC-----CeEE
Q 040370 67 AINQVRYS-STGGMYVTASK-DG----AIRLWDGVSA-NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-----STVK 134 (228)
Q Consensus 67 ~i~~~~~~-~~~~~l~~~~~-dg----~v~iwd~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~ 134 (228)
.+....|| |||++|+.+.. +| .|+++|+.++ +.+.... ......+.|+||++.|+....| ..|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~----~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV----SGTNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE----EEECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc----cCceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 56788999 99998875543 33 5999999988 6321100 1123468899999888877665 3688
Q ss_pred EEEccCCee--EEEEecceeeeeeeEEEECCCCcEEEEeeC--CCCeEEEEEcCCcc-ee--EEeecCCCCCcEEEEeCC
Q 040370 135 LWEVSSGRL--VKQYLGATHTQLRFQAVFNDTEEFVLSIDE--PSNEIVIWDALTAE-KV--AKWSSNHIGAPRWIEHSP 207 (228)
Q Consensus 135 ~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~-~~--~~~~~~~~~~v~~~~~~~ 207 (228)
++++.+++. ...+... .......+.++|++++++.... ....|+++|+.++. .. ..+.....+...++.|+.
T Consensus 251 ~~~lgt~~~~~~lv~~~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~ 329 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEH-NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG 329 (751)
T ss_dssp EEETTSCGGGCEEEEECC-CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET
T ss_pred EEECCCCchhcEEEEecC-CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee
Confidence 888877542 2222221 2234567889999998887653 23578888988763 22 333234445666666655
Q ss_pred CCcEEEEecCC--CCEEEee
Q 040370 208 AEAAFITCGTD--RSVRFWK 225 (228)
Q Consensus 208 ~~~~l~s~~~d--g~i~vwd 225 (228)
.+.+++.+..+ +..+||.
T Consensus 330 g~~l~~~t~~~~a~~~~L~~ 349 (751)
T 2xe4_A 330 TSHLVILTNEGGAVNHKLLI 349 (751)
T ss_dssp TTEEEEEECTTTCTTCEEEE
T ss_pred CCEEEEEeCCCCCCCcEEEE
Confidence 55555555544 3444443
No 276
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.64 E-value=9e-06 Score=65.17 Aligned_cols=213 Identities=11% Similarity=0.049 Sum_probs=118.7
Q ss_pred CcCCccccceeEEEee-cCcceEEEEEeCCCCEEEEecC-CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370 2 FDFSKATAKRAFRVIQ-DTHNVRSVSFHPSGDFLLAGTD-HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM 79 (228)
Q Consensus 2 wd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 79 (228)
||....+..+...... +.....++++.++++.++.|+. +..+.+||..+.+-......+. ...-.+++..++++.
T Consensus 224 yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~---~R~~~s~~~~~dg~i 300 (656)
T 1k3i_A 224 WDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV---ARGYQSSATMSDGRV 300 (656)
T ss_dssp ECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS---CCSSCEEEECTTSCE
T ss_pred EeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCc---cccccceEEecCCeE
Confidence 4555444444333322 2233345677789999999884 5689999998876543332221 112234566678998
Q ss_pred EEEEe-cC-----CeEEEEeCCCCceeeE-------Eecc------------------cc--------------------
Q 040370 80 YVTAS-KD-----GAIRLWDGVSANCVRS-------IVGA------------------HG-------------------- 108 (228)
Q Consensus 80 l~~~~-~d-----g~v~iwd~~~~~~~~~-------~~~~------------------~~-------------------- 108 (228)
++.|+ .+ ..+.+||..+++.... +... ..
T Consensus 301 yv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~ 380 (656)
T 1k3i_A 301 FTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG 380 (656)
T ss_dssp EEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred EEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcc
Confidence 88888 34 5689999876543221 0000 00
Q ss_pred -----------------cceeEEEEEC-CCCCEEEEeeCCC-----------eEEEEEccCCeeEEEE-ecceeeeeeeE
Q 040370 109 -----------------TAEATSANFT-KDQRFVLSCGKDS-----------TVKLWEVSSGRLVKQY-LGATHTQLRFQ 158 (228)
Q Consensus 109 -----------------~~~i~~~~~~-~~~~~l~~~~~d~-----------~i~~wd~~~~~~~~~~-~~~~~~~~~~~ 158 (228)
...-.++.|. .+++.++.|+.++ .+.+||..+.+..... ...........
T Consensus 381 w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~ 460 (656)
T 1k3i_A 381 DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT 460 (656)
T ss_dssp EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCE
T ss_pred eeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCC
Confidence 0011223332 2677777877542 6778888776544332 01111222234
Q ss_pred EEECCCCcEEEEeeCCC----------CeEEEEEcCCcceeEEee-cCCCCCcEEEEeCCCCcEEEEecC
Q 040370 159 AVFNDTEEFVLSIDEPS----------NEIVIWDALTAEKVAKWS-SNHIGAPRWIEHSPAEAAFITCGT 217 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~~d----------~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~ 217 (228)
++..|+++.++.+|..+ ..+.+||..+.+-...-. ...........+.|+++.++.||.
T Consensus 461 ~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 461 SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred eEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 45667888888776431 468999987755322111 111222334556789999999985
No 277
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.64 E-value=5.2e-05 Score=62.16 Aligned_cols=197 Identities=8% Similarity=0.020 Sum_probs=124.8
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccc-----eeeeccceeeEEeCCCCCeEEEEecCCeEEEEe
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP-----EISVNGAINQVRYSSTGGMYVTASKDGAIRLWD 93 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd 93 (228)
...|.++...+++. |..|+.++-|..|+..+++........ ... ...|.++...++++.|..|+.++-|..+|
T Consensus 356 ~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~-~~~v~~i~~d~~g~~lWigt~~~Gl~~~d 433 (795)
T 4a2l_A 356 DNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIG-SNNIKAVYVDEKKSLVYIGTHAGGLSILH 433 (795)
T ss_dssp CSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCS-CSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred CCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCC-CccEEEEEEcCCCCEEEEEeCcCceeEEe
Confidence 34689998888776 445777767889998876543322111 011 45788998888887567777777899999
Q ss_pred CCCCceeeEEecc--cccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEec----ceeeeeeeEEEECCCCcE
Q 040370 94 GVSANCVRSIVGA--HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLG----ATHTQLRFQAVFNDTEEF 167 (228)
Q Consensus 94 ~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 167 (228)
.++++........ .....|.++...+++...+. +.+ -+..||..+++....... ......+.++...+++..
T Consensus 434 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l 511 (795)
T 4a2l_A 434 RNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG-TLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRL 511 (795)
T ss_dssp TTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE-ESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCE
T ss_pred CCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE-ecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCE
Confidence 8876543322100 11357889988888775544 444 588999887654332211 112245677778888877
Q ss_pred EEEeeCCCCeEEEEEcCCcceeEEee------cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 168 VLSIDEPSNEIVIWDALTAEKVAKWS------SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 168 ~~~~~~~d~~i~i~d~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
.+.+. +.+..||..+++. .+. ......|.++...++|.+.++.. . .+..||.
T Consensus 512 Wigt~---~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~ 569 (795)
T 4a2l_A 512 WIGGE---EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNE 569 (795)
T ss_dssp EEEES---SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEET
T ss_pred EEEeC---CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECC
Confidence 66653 4588899876654 221 12335688999988888666544 3 4666653
No 278
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.63 E-value=6.6e-05 Score=57.06 Aligned_cols=204 Identities=12% Similarity=0.118 Sum_probs=115.1
Q ss_pred ecCcceEEEEEeCCCCEEEEecCC---Ce-EEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCeEEEEecCCeEEE
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDH---PI-AHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGMYVTASKDGAIRL 91 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d---~~-i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~i 91 (228)
........++++++++++++.... .. +...+...+.. ..... .. ......++++| ++.++++-..++.|+.
T Consensus 179 ~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~-~~~~~--~~-~~~P~giavd~~~G~lyv~d~~~~~V~~ 254 (433)
T 4hw6_A 179 TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT-ERLSL--CN-ARGAKTCAVHPQNGKIYYTRYHHAMISS 254 (433)
T ss_dssp CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC-CEEEE--EE-CSSBCCCEECTTTCCEEECBTTCSEEEE
T ss_pred cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee-ccccc--cc-cCCCCEEEEeCCCCeEEEEECCCCEEEE
Confidence 344568899999999944443311 12 33333222111 00000 01 34467789999 6766666667788999
Q ss_pred EeCCCCceeeEEecccccceeEEEEECCCCCEEEEe-eCCCeEEEEEcc--CCee--EEEEecc-e------------ee
Q 040370 92 WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC-GKDSTVKLWEVS--SGRL--VKQYLGA-T------------HT 153 (228)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~wd~~--~~~~--~~~~~~~-~------------~~ 153 (228)
+|..++.....+........-..++|+|++++|+.+ ...+.|+.+++. ++.. ...+.+. . .-
T Consensus 255 ~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~ 334 (433)
T 4hw6_A 255 YDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARL 334 (433)
T ss_dssp ECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBC
T ss_pred EECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEE
Confidence 998877663333222112233579999999855544 456789998865 2221 1122111 0 01
Q ss_pred eeeeEEEE---------CCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecC----------------CCCCcEEEEeC-C
Q 040370 154 QLRFQAVF---------NDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN----------------HIGAPRWIEHS-P 207 (228)
Q Consensus 154 ~~~~~~~~---------~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----------------~~~~v~~~~~~-~ 207 (228)
.....+++ .+++. ++++....+.|+.++. ++......-.+ .-.....|+++ +
T Consensus 335 ~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~ 412 (433)
T 4hw6_A 335 WGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMK 412 (433)
T ss_dssp SSEEEEEEEECGGGTTSSCCEE-EEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETT
T ss_pred cCCccEEEEccccccccCCCCc-EEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECC
Confidence 12345666 44444 4555665789999984 45332222111 11236789999 6
Q ss_pred CCcEEEEecCCCCEEEeee
Q 040370 208 AEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 208 ~~~~l~s~~~dg~i~vwd~ 226 (228)
++.++++=..+++|+..++
T Consensus 413 ~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 413 RKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp TTEEEEEEGGGTEEEEEEE
T ss_pred CCEEEEEeCCCCEEEEEec
Confidence 7777777677788888775
No 279
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.62 E-value=0.0001 Score=60.40 Aligned_cols=195 Identities=7% Similarity=0.046 Sum_probs=122.8
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN 98 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 98 (228)
...|.++...++++.|..|+.++-|..+|.++++..........-....|.++...+++++.+. +.+ -+.+||..+++
T Consensus 405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~~-Gl~~~~~~~~~ 482 (795)
T 4a2l_A 405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG-TLS-ALVRFNPEQRS 482 (795)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE-ESS-CEEEEETTTTE
T ss_pred CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE-ecC-ceeEEeCCCCe
Confidence 3578999988888756677777779999988876443322110011457899999888875554 444 58889987765
Q ss_pred eeeEEec----ccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEec-----ceeeeeeeEEEECCCCcEEE
Q 040370 99 CVRSIVG----AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLG-----ATHTQLRFQAVFNDTEEFVL 169 (228)
Q Consensus 99 ~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 169 (228)
....... ......|.++...+++...+.. . +-+..||..+++. .+.. ......+.++...+++...+
T Consensus 483 ~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWi 558 (795)
T 4a2l_A 483 FTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWV 558 (795)
T ss_dssp EEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEE
T ss_pred EEEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEE
Confidence 4322111 1113568899888888755544 4 4588999887665 2221 11234567777788888766
Q ss_pred EeeCCCCeEEEEEcCCcceeEEeec--C-CCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 170 SIDEPSNEIVIWDALTAEKVAKWSS--N-HIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 170 ~~~~~d~~i~i~d~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
++. +.+..||..+++.. .+.. + ....|.++...++|.+.+++ ..| |..|+
T Consensus 559 gT~---~Gl~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~G-l~~~~ 611 (795)
T 4a2l_A 559 GTR---EGFYCFNEKDKQIK-RYNTTNGLPNNVVYGILEDSFGRLWLST-NRG-ISCFN 611 (795)
T ss_dssp EES---SCEEEEETTTTEEE-EECGGGTCSCSCEEEEEECTTSCEEEEE-TTE-EEEEE
T ss_pred EeC---CCceeECCCCCcEE-EeCCCCCCchhheEEEEECCCCCEEEEc-CCc-eEEEc
Confidence 543 36888997765433 2211 1 23468889888888876665 333 55555
No 280
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.62 E-value=4.9e-05 Score=54.93 Aligned_cols=189 Identities=12% Similarity=0.028 Sum_probs=107.8
Q ss_pred ecCcceEEEEEeCCCCEEEEecCC--CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDH--PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG 94 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d--~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~ 94 (228)
........+++.++++++++.... ..|..++..+++......... ......++..+++..+++-..++.|..+|.
T Consensus 69 ~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~---~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~ 145 (306)
T 2p4o_A 69 TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPD---AIFLNGITPLSDTQYLTADSYRGAIWLIDV 145 (306)
T ss_dssp ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTT---CSCEEEEEESSSSEEEEEETTTTEEEEEET
T ss_pred eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCC---ccccCcccccCCCcEEEEECCCCeEEEEeC
Confidence 334578899999999866655332 246677777776543222211 122344455555555555556889999998
Q ss_pred CCCce-eeEEec-------ccccceeEEEEECCCCCEEEEe-eCCCeEEEEEccC-Cee--EEEEecceeeeeeeEEEEC
Q 040370 95 VSANC-VRSIVG-------AHGTAEATSANFTKDQRFVLSC-GKDSTVKLWEVSS-GRL--VKQYLGATHTQLRFQAVFN 162 (228)
Q Consensus 95 ~~~~~-~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~wd~~~-~~~--~~~~~~~~~~~~~~~~~~~ 162 (228)
.+++. +..... ...-.....+ +++++.|+.+ ...+.|..+|+.. ++. ...+. .......+++.
T Consensus 146 ~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~---~~~~P~gi~vd 220 (306)
T 2p4o_A 146 VQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV---EQTNIDDFAFD 220 (306)
T ss_dssp TTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE---ESCCCSSEEEB
T ss_pred CCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe---ccCCCCCeEEC
Confidence 65431 111100 0001233445 7777765544 4567899999874 322 11111 11234567888
Q ss_pred CCCcEEEEeeCCCCeEEEEEcCCcceeE--EeecCCCCCcEEEEeC---CCCcEEEEec
Q 040370 163 DTEEFVLSIDEPSNEIVIWDALTAEKVA--KWSSNHIGAPRWIEHS---PAEAAFITCG 216 (228)
Q Consensus 163 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~v~~~~~~---~~~~~l~s~~ 216 (228)
+++...++ ....+.|.++|.. ++... .. ......+++++|. |+++.|+.++
T Consensus 221 ~dG~l~va-~~~~~~V~~~~~~-G~~~~~~~~-~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 221 VEGNLYGA-THIYNSVVRIAPD-RSTTIIAQA-EQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp TTCCEEEE-CBTTCCEEEECTT-CCEEEEECG-GGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred CCCCEEEE-eCCCCeEEEECCC-CCEEEEeec-ccccCCceEEEEecccCCCCEEEEEC
Confidence 88876555 4445889999964 55432 22 2223568999998 8876665544
No 281
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.61 E-value=5.6e-05 Score=54.94 Aligned_cols=184 Identities=7% Similarity=-0.054 Sum_probs=108.9
Q ss_pred EEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCCeEEEEeCCCC---ceeeEEecccc
Q 040370 33 FLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDGAIRLWDGVSA---NCVRSIVGAHG 108 (228)
Q Consensus 33 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~---~~~~~~~~~~~ 108 (228)
+|+.+.. ..|+..|+...+....... ...+..++|++.++.|+ +-..++.|..+++... .....+... .
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~-----~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~-~ 75 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIPN-----LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-D 75 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEECS-----CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS-S
T ss_pred EEEEECC-CeEEEEECCCcceEehhcC-----CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC-C
Confidence 3444443 4588889887654333221 34578899998655444 5556689999998751 222222211 1
Q ss_pred cceeEEEEECCCC-CEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC-CeEEEEEcCCc
Q 040370 109 TAEATSANFTKDQ-RFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS-NEIVIWDALTA 186 (228)
Q Consensus 109 ~~~i~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~i~d~~~~ 186 (228)
-.....+++.+.+ +.+++-...+.|.+.|+........... .......+++.|.+..++.+.... +.|...++. +
T Consensus 76 ~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~--~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G 152 (316)
T 1ijq_A 76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-G 152 (316)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC--TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-S
T ss_pred CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC--CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-C
Confidence 2345788888744 4445556678999999865332222221 123446778888777777666533 788888875 3
Q ss_pred ceeEEeecCCCCCcEEEEeCCCCcEEE-EecCCCCEEEeee
Q 040370 187 EKVAKWSSNHIGAPRWIEHSPAEAAFI-TCGTDRSVRFWKE 226 (228)
Q Consensus 187 ~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~ 226 (228)
.....+........+.++++|++..|+ +-+..+.|..+|+
T Consensus 153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~ 193 (316)
T 1ijq_A 153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 193 (316)
T ss_dssp CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEec
Confidence 333333233345678999998765554 4445567777764
No 282
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.60 E-value=2.4e-05 Score=58.60 Aligned_cols=191 Identities=7% Similarity=-0.064 Sum_probs=113.7
Q ss_pred EEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCCeEEEEeCCCCceeeE
Q 040370 24 SVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDGAIRLWDGVSANCVRS 102 (228)
Q Consensus 24 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~ 102 (228)
|.+..+ ..+|+.+. ...|+..++........... ...+..++|++.++.|+ +-...+.|..+++........
T Consensus 81 C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~~~~-----~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~ 153 (386)
T 3v65_B 81 CKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLNN-----LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 153 (386)
T ss_dssp EEECSS-CCEEEEEC-BSCEEEECTTSCCCEEEECS-----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE
T ss_pred ECCccc-cceeEeec-CccceeeccCCCcEEEEecC-----CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE
Confidence 444434 23444343 34677788776543332221 34578899997655444 555678899999876554333
Q ss_pred EecccccceeEEEEECCCC-CEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC-CeEEE
Q 040370 103 IVGAHGTAEATSANFTKDQ-RFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS-NEIVI 180 (228)
Q Consensus 103 ~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~i 180 (228)
+... ......+++.+.+ .++++-...+.|.+.++........+.. .......+++.|.+..++.+.... +.|..
T Consensus 154 ~~~~--~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~--~l~~P~giavdp~~g~ly~td~~~~~~I~r 229 (386)
T 3v65_B 154 VSTG--LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ--SLEKPRAIALHPMEGTIYWTDWGNTPRIEA 229 (386)
T ss_dssp ECSS--CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECS--SCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred EeCC--CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecC--CCCCCcEEEEEcCCCeEEEeccCCCCEEEE
Confidence 3221 2345678888754 4445555677899988864332222221 223456778888888887777655 78999
Q ss_pred EEcCCcceeEEeecCCCCCcEEEEeCCCCcEEE-EecCCCCEEEeee
Q 040370 181 WDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFI-TCGTDRSVRFWKE 226 (228)
Q Consensus 181 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~ 226 (228)
+++...... .+........+.|+++|++..|+ +-+..+.|..+|+
T Consensus 230 ~~~dG~~~~-~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~ 275 (386)
T 3v65_B 230 SSMDGSGRR-IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 275 (386)
T ss_dssp EETTSCSCE-EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECT
T ss_pred EeCCCCCcE-EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 887644333 33233345678999998655444 4445566776653
No 283
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.54 E-value=0.00021 Score=58.38 Aligned_cols=200 Identities=9% Similarity=0.002 Sum_probs=117.8
Q ss_pred ecCcceEEEEEeCCCCEE-EEecCCCeEEEEEcccce----EEeeeccceeeeccceeeEEeCCCCC-eEEEEecCCeEE
Q 040370 17 QDTHNVRSVSFHPSGDFL-LAGTDHPIAHLYDVNTFQ----CYLSANVPEISVNGAINQVRYSSTGG-MYVTASKDGAIR 90 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~ 90 (228)
.....+..++|++....| ++-...+.|+.+++.... ........ ......|++.+.++ ++++-...+.|.
T Consensus 421 ~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~----l~~P~GLAvD~~~~~LY~tD~~~~~I~ 496 (791)
T 3m0c_C 421 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD----IQAPDGLAVDWIHSNIYWTDSVLGTVS 496 (791)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS----CSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecC----CCCcceeeeeecCCcEEEEecCCCeEE
Confidence 345567889998854444 455566788888886531 11111111 34567788887664 555556678999
Q ss_pred EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC--CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEE
Q 040370 91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK--DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFV 168 (228)
Q Consensus 91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (228)
+.++........+... ......|+++|.+.+|+.+.. .+.|...++... ....+... .-.....+++.+.+..|
T Consensus 497 v~~ldG~~~~~l~~~~--l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~-~~~~lv~~-~l~~P~GLavD~~~~~L 572 (791)
T 3m0c_C 497 VADTKGVKRKTLFREN--GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTE-NIQWPNGITLDLLSGRL 572 (791)
T ss_dssp EEETTSSSEEEEEECT--TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECS-SCSCEEEEEEETTTTEE
T ss_pred EEeCCCCeEEEEEeCC--CCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC-ceEEEEeC-CCCCceEEEEecCCCeE
Confidence 9998754433333222 345789999997666655542 267999998643 33333221 23456678888888888
Q ss_pred EEeeCCCCeEEEEEcCCcceeEEeec-CCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 169 LSIDEPSNEIVIWDALTAEKVAKWSS-NHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 169 ~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
+.+....+.|...++........... .......+|++.. +.++++-...+.|...+
T Consensus 573 YwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 573 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSAN 629 (791)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEe
Confidence 88777778999999865443333211 1223445666633 34444444555565544
No 284
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.53 E-value=5.8e-05 Score=52.86 Aligned_cols=160 Identities=12% Similarity=0.124 Sum_probs=102.6
Q ss_pred ccceeeEEeCCCCCeEE-EEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee
Q 040370 65 NGAINQVRYSSTGGMYV-TASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL 143 (228)
Q Consensus 65 ~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 143 (228)
...+..++|+|+++.|+ +...++.|...|.. ++..+.+.... ....-.+++.+++.++++.-.++.+.++++.....
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe
Confidence 45699999999766454 57778899999987 88887775432 34677888888888777766778899998865442
Q ss_pred ---EEEEec----ceeeeeeeEEEECCCCcEEEEeeCCCC-eEEEEEcC-CcceeEEee------cCCCCCcEEEEeCCC
Q 040370 144 ---VKQYLG----ATHTQLRFQAVFNDTEEFVLSIDEPSN-EIVIWDAL-TAEKVAKWS------SNHIGAPRWIEHSPA 208 (228)
Q Consensus 144 ---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~d~-~i~i~d~~-~~~~~~~~~------~~~~~~v~~~~~~~~ 208 (228)
+..... .........++++|.+..++++...+. .|+.|+-. ....+.... ..+...+.+++++|.
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~ 183 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQ 183 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETT
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCC
Confidence 222211 112333468899999877777666544 45555511 111111110 123446789999994
Q ss_pred -CcEEEEecCCCCEEEeee
Q 040370 209 -EAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 209 -~~~l~s~~~dg~i~vwd~ 226 (228)
+.+++.+..+..+..+|.
T Consensus 184 tg~lliLS~~s~~L~~~d~ 202 (255)
T 3qqz_A 184 KNTLLVLSHESRALQEVTL 202 (255)
T ss_dssp TTEEEEEETTTTEEEEECT
T ss_pred CCeEEEEECCCCeEEEEcC
Confidence 556666666666766663
No 285
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.51 E-value=0.00012 Score=59.97 Aligned_cols=197 Identities=13% Similarity=0.087 Sum_probs=120.7
Q ss_pred cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce
Q 040370 20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC 99 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 99 (228)
..|.++...+++. |..|+.++-|..++..++............ ...|.++...++++ |..|+.++-+..+|.++++.
T Consensus 363 ~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~ 439 (781)
T 3v9f_A 363 KVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELL-SNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKF 439 (781)
T ss_dssp SCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CC-CSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEE
T ss_pred cceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCC-CcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcE
Confidence 5688998887776 445665556888998765433221111111 46789998887776 44566667789999876653
Q ss_pred eeEEec-ccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecc---eeeeeeeEEEECCCCcEEEEeeCCC
Q 040370 100 VRSIVG-AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA---THTQLRFQAVFNDTEEFVLSIDEPS 175 (228)
Q Consensus 100 ~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d 175 (228)
.. +.. ......|.++...+++.. ..|+. +-+..+|..+++........ .....+.++...+++...+.+..
T Consensus 440 ~~-~~~~~~~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~-- 514 (781)
T 3v9f_A 440 QI-IELEKNELLDVRVFYEDKNKKI-WIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFG-- 514 (781)
T ss_dssp EE-CCSTTTCCCCEEEEEECTTSEE-EEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESS--
T ss_pred EE-eccCCCCCCeEEEEEECCCCCE-EEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcC--
Confidence 32 221 112457888988887764 44555 56899998776543322111 01345677778888887776543
Q ss_pred CeEEEEEcCCcceeEEeecC---CCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 176 NEIVIWDALTAEKVAKWSSN---HIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 176 ~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
+.+..||..+++.. .+... ....|.++...++|.+.++.. +|.+..||.
T Consensus 515 ~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~ 566 (781)
T 3v9f_A 515 GGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSA 566 (781)
T ss_dssp SCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCT
T ss_pred CCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECC
Confidence 45778887665433 23111 234688999988888666544 665466653
No 286
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.47 E-value=9.2e-05 Score=53.55 Aligned_cols=158 Identities=12% Similarity=0.148 Sum_probs=102.5
Q ss_pred ceeeEEeCCCCCeEEEEe-cCCeEEEEeCCCCceeeE-Eec----ccccceeEEEEE---CCCCCEEEEee---------
Q 040370 67 AINQVRYSSTGGMYVTAS-KDGAIRLWDGVSANCVRS-IVG----AHGTAEATSANF---TKDQRFVLSCG--------- 128 (228)
Q Consensus 67 ~i~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~-~~~----~~~~~~i~~~~~---~~~~~~l~~~~--------- 128 (228)
...+++|++....|..++ ..+.|..||...+..... +.. ......+..+.+ .|+++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 456789988655566555 789999999875543333 211 111224688999 68877777543
Q ss_pred ----CCCeEEEEEcc---CCeeEEEEecce-----------eeeeeeEEEECCCCcEEEEeeCCC-CeEEEEEcCCccee
Q 040370 129 ----KDSTVKLWEVS---SGRLVKQYLGAT-----------HTQLRFQAVFNDTEEFVLSIDEPS-NEIVIWDALTAEKV 189 (228)
Q Consensus 129 ----~d~~i~~wd~~---~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~d-~~i~i~d~~~~~~~ 189 (228)
.+..+..||+. +++.+....... .......+...++|+..++.+. . +.|...+.. ++..
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~-~~~~I~rV~pd-G~~~ 171 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL-GMPAIARVSAD-GKTV 171 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE-SSCEEEEECTT-SCCE
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC-CCCeEEEEeCC-CCEE
Confidence 26789999999 777766554211 1134678888999887665443 3 666666644 3333
Q ss_pred EEeec-----CCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 190 AKWSS-----NHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 190 ~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
..+.. ......+.|+++|+++.|+.....|.+.-+|+
T Consensus 172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~ 213 (334)
T 2p9w_A 172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDV 213 (334)
T ss_dssp EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEEC
T ss_pred eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcC
Confidence 32211 11224679999999998888877999988885
No 287
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.46 E-value=3.3e-06 Score=68.01 Aligned_cols=197 Identities=9% Similarity=-0.005 Sum_probs=115.2
Q ss_pred cceEEEEEeCCCCEEEEe-cCCCeEEEEEccc----ceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeEEEEe
Q 040370 20 HNVRSVSFHPSGDFLLAG-TDHPIAHLYDVNT----FQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAIRLWD 93 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~-~~d~~i~vw~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd 93 (228)
..+..++|++.+..|+.+ ...+.|+.+++.. ......... . ......+++.+. ++++++-...+.|.+.+
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~---~-~~~P~glavD~~~g~LY~tD~~~~~I~v~d 481 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---D-IQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 481 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS---C-C--CCCEECCCSSSBCEECCTTTSCEEEEB
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC---C-CCCcceEEEEeeCCcEEEEeccCCeEEEEe
Confidence 456788999866666554 4567888888875 111111110 0 123567888864 44555555678899999
Q ss_pred CCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-C-CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370 94 GVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-D-STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI 171 (228)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
+........+... ......++++|.+.+|+.+.. . +.|..+++.. .....+... .......++++|++..|+.+
T Consensus 482 ~dg~~~~~l~~~~--~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~~~-~l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 482 TKGVKRKTLFREQ--GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTE-NIQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp SSSCCEEEECCCS--SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEESCS-SCSSCCCEEECTTTCCEEEE
T ss_pred cCCCceEEEEeCC--CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEEeC-CCCCccEEEEeccCCEEEEE
Confidence 8754433322221 234577889996655554442 2 6788888753 222222111 22345678899988888877
Q ss_pred eCCCCeEEEEEcCCcceeEEeec--CCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 172 DEPSNEIVIWDALTAEKVAKWSS--NHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 172 ~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
....+.|..+++..... ..+.. ........|++..+ .++++....+.|..++.
T Consensus 558 D~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR 612 (699)
T ss_dssp ETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred ecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence 77778999999864332 22212 12233445666543 55566666778887764
No 288
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.46 E-value=8.8e-05 Score=53.96 Aligned_cols=180 Identities=10% Similarity=-0.003 Sum_probs=106.3
Q ss_pred CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC-eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEEC
Q 040370 40 HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG-MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFT 118 (228)
Q Consensus 40 d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (228)
...|+..+++........... . ......++|.+.++ ++.+-...+.|..+++..+.....+.... -.....+++.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~--~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~-l~~p~glavd 87 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG--G-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-LLSPDGLACD 87 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE--E-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC-CSCCCEEEEE
T ss_pred cCeEEEEECCCCceEEEEEec--C-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC-CCCccEEEEE
Confidence 457888888765311111111 1 23467899998544 44555567889999987664222221111 2345678888
Q ss_pred C-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC-CCCeEEEEEcCCcceeEEeecCC
Q 040370 119 K-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE-PSNEIVIWDALTAEKVAKWSSNH 196 (228)
Q Consensus 119 ~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~ 196 (228)
+ .++.+++-...+.|.++++... ....+... .......+++.|.+..++.+.. ..+.|...++... ....+....
T Consensus 88 ~~~g~ly~~d~~~~~I~~~~~dG~-~~~~l~~~-~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~ 164 (318)
T 3sov_A 88 WLGEKLYWTDSETNRIEVSNLDGS-LRKVLFWQ-ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSE 164 (318)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSC-SCEEEECS-SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEEECSS
T ss_pred cCCCeEEEEECCCCEEEEEECCCC-cEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEEEECC
Confidence 7 4455555556788999998643 32333211 2234467788887777777663 3578888887543 333332333
Q ss_pred CCCcEEEEeCCCCcEEEE-ecCCCCEEEeee
Q 040370 197 IGAPRWIEHSPAEAAFIT-CGTDRSVRFWKE 226 (228)
Q Consensus 197 ~~~v~~~~~~~~~~~l~s-~~~dg~i~vwd~ 226 (228)
....+.++++|++..|+. =+..+.|..+|+
T Consensus 165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~ 195 (318)
T 3sov_A 165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNL 195 (318)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence 456789999986555544 445667777664
No 289
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.46 E-value=0.00019 Score=53.93 Aligned_cols=184 Identities=7% Similarity=-0.051 Sum_probs=110.8
Q ss_pred EEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCCeEEEEeCCCCc---eeeEEecccc
Q 040370 33 FLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDGAIRLWDGVSAN---CVRSIVGAHG 108 (228)
Q Consensus 33 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~---~~~~~~~~~~ 108 (228)
+|+.+. ...|+..++........... ...+..++|++.++.|+ +-...+.|+.+++.... ....+... .
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~-----~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~-~ 157 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPN-----LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-D 157 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECS-----CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS-S
T ss_pred eeEEec-cceeEEEccCCcceeEeccc-----cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC-C
Confidence 444443 36788888876543332221 45678999998655555 44467889999886522 12222221 1
Q ss_pred cceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC-CCeEEEEEcCCc
Q 040370 109 TAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP-SNEIVIWDALTA 186 (228)
Q Consensus 109 ~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~i~i~d~~~~ 186 (228)
......+++.+ .++++++-...+.|.+.++........+.. .......+++.|.+.+++.+... .+.|...++...
T Consensus 158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~--~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 235 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC--SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC
T ss_pred CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC--CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC
Confidence 34567888987 455555656678899999875443333321 22335678888877777776642 378888887644
Q ss_pred ceeEEeecCCCCCcEEEEeCCCCcEEEEe-cCCCCEEEeee
Q 040370 187 EKVAKWSSNHIGAPRWIEHSPAEAAFITC-GTDRSVRFWKE 226 (228)
Q Consensus 187 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~ 226 (228)
... .+........+.|+++|++..|+.+ ...+.|...|+
T Consensus 236 ~~~-~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~ 275 (400)
T 3p5b_L 236 DIY-SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 275 (400)
T ss_dssp SCE-EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccE-EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeC
Confidence 333 3323344578899999876666554 34566766653
No 290
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.43 E-value=5.3e-05 Score=59.88 Aligned_cols=193 Identities=9% Similarity=0.010 Sum_probs=118.9
Q ss_pred CCEEEEecC-CCeEEEEEc-ccceEEeeeccceeeecc-------ceeeEEeCCCCCe----EEEEecCCeEEEEeCCCC
Q 040370 31 GDFLLAGTD-HPIAHLYDV-NTFQCYLSANVPEISVNG-------AINQVRYSSTGGM----YVTASKDGAIRLWDGVSA 97 (228)
Q Consensus 31 ~~~l~~~~~-d~~i~vw~~-~~~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~----l~~~~~dg~v~iwd~~~~ 97 (228)
+..+++++. ++.|.-+|. .+|+.+............ ....+++.|.+.. ++.++.|+.|.-+|.++|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456667776 889999999 899988776543211000 0123455444444 888889999999999999
Q ss_pred ceeeEEeccccc--ceeEE-EEECCCCCEEEEee------CCCeEEEEEccCCeeEEEEecceeee--------------
Q 040370 98 NCVRSIVGAHGT--AEATS-ANFTKDQRFVLSCG------KDSTVKLWEVSSGRLVKQYLGATHTQ-------------- 154 (228)
Q Consensus 98 ~~~~~~~~~~~~--~~i~~-~~~~~~~~~l~~~~------~d~~i~~wd~~~~~~~~~~~~~~~~~-------------- 154 (228)
+.+-........ ..+.+ .... ++ .++.++ .++.|+-+|.++++.+-++.......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 988776543210 01111 1111 34 455554 37999999999999887765422110
Q ss_pred ----------------------eeeEEEECCCCcEEEEeeCC---------------CCeEEEEEcCCcceeEEeecCCC
Q 040370 155 ----------------------LRFQAVFNDTEEFVLSIDEP---------------SNEIVIWDALTAEKVAKWSSNHI 197 (228)
Q Consensus 155 ----------------------~~~~~~~~~~~~~~~~~~~~---------------d~~i~i~d~~~~~~~~~~~~~~~ 197 (228)
.-....+.+....++...++ .+.|..+|.++|+..-.+...+.
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~ 299 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence 00123445566666665442 14899999999999877754332
Q ss_pred ---------CCcEEEEeC-CCC---cEEEEecCCCCEEEeee
Q 040370 198 ---------GAPRWIEHS-PAE---AAFITCGTDRSVRFWKE 226 (228)
Q Consensus 198 ---------~~v~~~~~~-~~~---~~l~s~~~dg~i~vwd~ 226 (228)
.++. +... .+| ..++.++.+|.+.+.|.
T Consensus 300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~ 340 (599)
T 1w6s_A 300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDR 340 (599)
T ss_dssp CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred ccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEEC
Confidence 1121 2222 456 56777888998888875
No 291
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=0.00018 Score=55.34 Aligned_cols=156 Identities=8% Similarity=-0.015 Sum_probs=97.2
Q ss_pred eeeEEeCCC-CCeEEEEe-cCCeEEEEeCCCCceeeEEeccc-ccceeEEEEE-------CCCCCEEEEeeCCC------
Q 040370 68 INQVRYSST-GGMYVTAS-KDGAIRLWDGVSANCVRSIVGAH-GTAEATSANF-------TKDQRFVLSCGKDS------ 131 (228)
Q Consensus 68 i~~~~~~~~-~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~-~~~~i~~~~~-------~~~~~~l~~~~~d~------ 131 (228)
...|+|.|. ...|+.+. ..+.|++.|+.++.......... .......++| ++++++|+.+...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 457899983 44454444 44678899988776655443321 1235789999 99998666665543
Q ss_pred -eEEEEEccC-CeeE-----EEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcC-------Ccce---------
Q 040370 132 -TVKLWEVSS-GRLV-----KQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL-------TAEK--------- 188 (228)
Q Consensus 132 -~i~~wd~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-------~~~~--------- 188 (228)
.|.+++... +... ..+. .......++.+|++..++++...++.|..+|+. ++..
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~---~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIA---AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEE---EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred ceEEEEecCCCCceeecccceeec---cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266666333 2221 1221 122345677889777778777778999999987 4443
Q ss_pred --eEE-eecCCCCCcEEEEeCCCCcEE-EEecCCCCEEEeee
Q 040370 189 --VAK-WSSNHIGAPRWIEHSPAEAAF-ITCGTDRSVRFWKE 226 (228)
Q Consensus 189 --~~~-~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~ 226 (228)
... +..+.......++|+|++++| ++=....+|+.++.
T Consensus 298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 112 212334456899999999954 44455667777553
No 292
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.36 E-value=0.00043 Score=56.70 Aligned_cols=200 Identities=7% Similarity=-0.007 Sum_probs=120.2
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeecc-----ceeeeccceeeEEeCCCCCeEEEEecCCeEEEEe
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANV-----PEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD 93 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd 93 (228)
...|.++...++|. |-.|+.++-|..++............ ...-....|.++...++++ |..|+.++-|..+|
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~ 389 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFE 389 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEE
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEE
Confidence 35688998888775 55566666688888775543221110 0010145689999888776 55666666788899
Q ss_pred CCCCceeeEEe-cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370 94 GVSANCVRSIV-GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID 172 (228)
Q Consensus 94 ~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
..++....... .......|.++...+++. |..|+.++-+..+|.++++.............+.++...+++...+.+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt- 467 (781)
T 3v9f_A 390 NGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGT- 467 (781)
T ss_dssp TTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEE-
T ss_pred CCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEE-
Confidence 76543221110 011145788888887776 445666677999998776543221111123456777777777766554
Q ss_pred CCCCeEEEEEcCCcceeEEeecC----CCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 173 EPSNEIVIWDALTAEKVAKWSSN----HIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 173 ~~d~~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
. +.+..||..+++........ ....|.++...++|.+.+....+| +..||
T Consensus 468 ~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~ 521 (781)
T 3v9f_A 468 H--AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYT 521 (781)
T ss_dssp T--TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEEC
T ss_pred C--CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEe
Confidence 2 56889998776543332111 135788999998888666543344 55555
No 293
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.35 E-value=0.00049 Score=54.75 Aligned_cols=199 Identities=9% Similarity=-0.024 Sum_probs=115.2
Q ss_pred cCcceEEEEEeCCCCEEEEe-cCCCeEEEEEcccceE-EeeeccceeeeccceeeEEeCCCCC-eEEEEecCCeEEEEeC
Q 040370 18 DTHNVRSVSFHPSGDFLLAG-TDHPIAHLYDVNTFQC-YLSANVPEISVNGAINQVRYSSTGG-MYVTASKDGAIRLWDG 94 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~-~~d~~i~vw~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~ 94 (228)
.-.....++|++.+..|+.+ ...+.|..++++.... ....... ......+++.+.++ ++++-...+.|.+.++
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~----~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~ 113 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG----LLSPDGLACDWLGEKLYWTDSETNRIEVSNL 113 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSS----CSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCC----CCCcCeEEEEecCCEEEEEeCCCCEEEEEEC
Confidence 34567899999866666544 4567888888875421 1111111 24578899988555 5555566789999998
Q ss_pred CCCceeeEEecccccceeEEEEECCCCCEEEEeeC--CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370 95 VSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK--DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID 172 (228)
Q Consensus 95 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
.... ...+.... -.....+++.|.+.+|+.+.. .+.|...++.. .....+... .......+++++++..++.+.
T Consensus 114 dG~~-~~~l~~~~-l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG-~~~~~l~~~-~~~~P~Glald~~~~~LY~aD 189 (619)
T 3s94_A 114 DGSL-RKVLFWQE-LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINS-EIYWPNGLTLDYEEQKLYWAD 189 (619)
T ss_dssp TSCS-CEEEECSS-CSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEECS-SCSSEEEEEEETTTTEEEEEE
T ss_pred CCCC-EEEEEeCC-CCCCceEEEecCCCeEEEeccCCCCEEEEEECCC-CceEEEEeC-CCCCCcEEEEEccCCEEEEEe
Confidence 6543 33333211 345678999997665555543 46777777753 333333211 233456788888888888877
Q ss_pred CCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 173 EPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 173 ~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
...+.|..+|+..... ..+..+......++++..+ ..+++-...+.|...|.
T Consensus 190 ~~~~~I~~~~~dG~~~-~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~ 241 (619)
T 3s94_A 190 AKLNFIHKSNLDGTNR-QAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNK 241 (619)
T ss_dssp TTTCCEEEESSSCCEE-C---------CCCEEESSS-EEEEECTTTCSEEEEES
T ss_pred CCCCeEEEecCCCCcc-EEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEEC
Confidence 7778999999864333 2222222233456777655 44555445666766653
No 294
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.29 E-value=0.00044 Score=50.49 Aligned_cols=193 Identities=9% Similarity=0.064 Sum_probs=107.7
Q ss_pred cceEEEEEeCCCCEEEEecCCCeEEEEEc-ccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370 20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDV-NTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN 98 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 98 (228)
..+..+.+.+++..++++. ++.| |.. +.++........ . ...+..+.+.|++.+++.+...+..+-.|- .++
T Consensus 122 ~~~~~i~~~~~~~~~~~~~-~g~v--~~S~DgG~tW~~~~~~--~-~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~ 194 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITN-VGAI--YRTKDSGKNWQALVQE--A-IGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQT 194 (327)
T ss_dssp SCEEEEEEEETTEEEEEET-TCCE--EEESSTTSSEEEEECS--C-CCCEEEEEECTTSCEEEEETTSSEEEEECT-TCS
T ss_pred CCeEEEEEECCCCEEEEeC-CccE--EEEcCCCCCCEEeecC--C-CcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCC
Confidence 4567787777776666554 5543 332 334333222221 1 456888999998887776655444444442 133
Q ss_pred eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecc--eeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370 99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA--THTQLRFQAVFNDTEEFVLSIDEPSN 176 (228)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~ 176 (228)
....+.... ...+..+.+.+++..+ .++.+|.+++.+...++.-..+... .....+..+.+.+++..+++ +. ++
T Consensus 195 tW~~~~~~~-~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~-g~-~g 270 (327)
T 2xbg_A 195 AWEPHNRTT-SRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLA-GG-AG 270 (327)
T ss_dssp SCEEEECCS-SSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEE-ES-TT
T ss_pred ceeECCCCC-CCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEE-eC-CC
Confidence 333332222 4577888899888755 4556788877643324332222211 11223567778877666555 44 47
Q ss_pred eEEEEEcCCcceeEEeec--CCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 177 EIVIWDALTAEKVAKWSS--NHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 177 ~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
.+ .+....++.-..... .....+.++.|.+++. ++.++.+|.|.-++
T Consensus 271 ~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 271 AL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp CE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred eE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 66 344444554443321 2345678888875554 66677888776554
No 295
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.28 E-value=0.00071 Score=55.30 Aligned_cols=176 Identities=9% Similarity=-0.054 Sum_probs=104.7
Q ss_pred CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC-eEEEEecCCeEEEEeCCCC----ceeeEEecccccceeEEE
Q 040370 41 PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG-MYVTASKDGAIRLWDGVSA----NCVRSIVGAHGTAEATSA 115 (228)
Q Consensus 41 ~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~i~~~ 115 (228)
..|+..++........... ...+..++|.+.+. ++++-...+.|+.+++... .....+... ......|
T Consensus 404 ~~Ir~i~l~~~~~~~l~~~-----~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~--l~~P~GL 476 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIPN-----LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD--IQAPDGL 476 (791)
T ss_dssp SSEEEECTTSCCCEEEECS-----CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS--CSCCCEE
T ss_pred cceeEeeccCCcceeeecC-----CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecC--CCCccee
Confidence 4577777765543222221 34567899988544 4455556688998888653 222222211 3455678
Q ss_pred EECCCCC-EEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC-CeEEEEEcCCcceeEEee
Q 040370 116 NFTKDQR-FVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS-NEIVIWDALTAEKVAKWS 193 (228)
Q Consensus 116 ~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~i~d~~~~~~~~~~~ 193 (228)
++.+.++ ++++-...+.|.+.++.... ...+... .......+++.|...+|+.+.... +.|...++.... ...+.
T Consensus 477 AvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~-~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~-~~~lv 553 (791)
T 3m0c_C 477 AVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLV 553 (791)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEEC-TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEE
T ss_pred eeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEEeC-CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-eEEEE
Confidence 8887664 45555567899999987543 3333211 223456788888877777766433 789998886443 33333
Q ss_pred cCCCCCcEEEEeCCCCcEEEEe-cCCCCEEEeee
Q 040370 194 SNHIGAPRWIEHSPAEAAFITC-GTDRSVRFWKE 226 (228)
Q Consensus 194 ~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~ 226 (228)
.........|++++.+..|+.+ ...+.|...++
T Consensus 554 ~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~ 587 (791)
T 3m0c_C 554 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 587 (791)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEec
Confidence 4444678899999766555544 34455666553
No 296
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.25 E-value=0.001 Score=53.03 Aligned_cols=194 Identities=8% Similarity=0.006 Sum_probs=121.4
Q ss_pred cceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC-eEEEEecCCeEEEEeCCCC
Q 040370 20 HNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG-MYVTASKDGAIRLWDGVSA 97 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~ 97 (228)
..+..++|++.+..|+ +-..++.|..++++........... ......+++.+.+. +.++-...+.|.+.++...
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g----~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~ 112 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG----LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ 112 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS----CSCCCEEEEETTTTEEEEEETTTTEEEEEETTST
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCC----CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC
Confidence 4678999998655555 5556788888888754322222211 23467788876544 4455556788999998654
Q ss_pred ceeeEEecccccceeEEEEECCCCCEEEEee--CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC
Q 040370 98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCG--KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS 175 (228)
Q Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 175 (228)
. ...+.... -.....++++|....|+... ..+.|...++.... ...+.. .......+++++++..++.+....
T Consensus 113 ~-~~~l~~~~-l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~--~~~~P~GlalD~~~~~LY~aD~~~ 187 (628)
T 4a0p_A 113 H-RQVLVWKD-LDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVP--NVGRANGLTIDYAKRRLYWTDLDT 187 (628)
T ss_dssp T-CEEEECSS-CCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEEC--SCSSEEEEEEETTTTEEEEEETTT
T ss_pred c-EEEEEeCC-CCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEEC--CCCCcceEEEccccCEEEEEECCC
Confidence 3 33332211 34568999999655555554 25678888876433 333322 234556788899888888888878
Q ss_pred CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 176 NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 176 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
+.|..+|+..... ..+ .........+++.. +.++++-...+.|...|
T Consensus 188 ~~I~~~d~dG~~~-~v~-~~~l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 188 NLIESSNMLGLNR-EVI-ADDLPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp TEEEEEETTSCSC-EEE-EECCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred CEEEEEcCCCCce-EEe-eccCCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 9999999865444 223 22334456777764 45555555566676665
No 297
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.17 E-value=0.00087 Score=49.36 Aligned_cols=190 Identities=8% Similarity=0.050 Sum_probs=111.7
Q ss_pred cceEEEEEeCCCCEEEEe------------cCCCeEEEEEcccc--eEEeeeccce---eeeccceeeEEeCC--CCC-e
Q 040370 20 HNVRSVSFHPSGDFLLAG------------TDHPIAHLYDVNTF--QCYLSANVPE---ISVNGAINQVRYSS--TGG-M 79 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~------------~~d~~i~vw~~~~~--~~~~~~~~~~---~~~~~~i~~~~~~~--~~~-~ 79 (228)
...-.+...|+|..++++ ..+|.|.++|.++. +. ..+.... ....-....+.+.+ ++. +
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 345677788887655554 26899999998742 22 1221110 00023556677655 343 4
Q ss_pred EEEEe-c--CCeEEEEeCCCCce----eeEEecccccceeEEEEECCCCCEEEEee-----------------CCCeEEE
Q 040370 80 YVTAS-K--DGAIRLWDGVSANC----VRSIVGAHGTAEATSANFTKDQRFVLSCG-----------------KDSTVKL 135 (228)
Q Consensus 80 l~~~~-~--dg~v~iwd~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----------------~d~~i~~ 135 (228)
|+.+. . +..+.+|++..... +..+... .-...+.+.+.++|...++.. ..|.|..
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~-~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK-LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCT-TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccC-CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 44442 2 46788887665321 2223222 234578899999998777654 1245555
Q ss_pred EEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC-ccee--EEeecCCCCCcEEEEeCC-CCcE
Q 040370 136 WEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT-AEKV--AKWSSNHIGAPRWIEHSP-AEAA 211 (228)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~--~~~~~~~~~~v~~~~~~~-~~~~ 211 (228)
+|. ++ +..+.. .-.....++++|+++.++++.+..+.|..|++.. +... ..+ ...+....+++.+ +|++
T Consensus 208 ~d~--~~-~~~~~~--~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi~vD~e~G~l 280 (355)
T 3sre_A 208 YSP--ND-VRVVAE--GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SFDTLVDNISVDPVTGDL 280 (355)
T ss_dssp ECT--TC-CEEEEE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSEEEEEEECTTTCCE
T ss_pred EEC--Ce-EEEeec--CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eCCCCCceEEEeCCCCcE
Confidence 554 32 222211 3345578899999999888887779999999863 3221 122 2346678899998 5888
Q ss_pred EEEecCC
Q 040370 212 FITCGTD 218 (228)
Q Consensus 212 l~s~~~d 218 (228)
.+++..+
T Consensus 281 wva~~~~ 287 (355)
T 3sre_A 281 WVGCHPN 287 (355)
T ss_dssp EEEEESC
T ss_pred EEEecCC
Confidence 7766533
No 298
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.15 E-value=0.00085 Score=48.17 Aligned_cols=187 Identities=11% Similarity=0.014 Sum_probs=93.6
Q ss_pred CCCEEEEecCC-----CeEEEEEcccce---EEeeeccceeeeccceeeEEeCCCCCeEEEEecC-----CeEEEEeCCC
Q 040370 30 SGDFLLAGTDH-----PIAHLYDVNTFQ---CYLSANVPEISVNGAINQVRYSSTGGMYVTASKD-----GAIRLWDGVS 96 (228)
Q Consensus 30 ~~~~l~~~~~d-----~~i~vw~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~ 96 (228)
++..++.|+.+ ..+.+||..+.+ -......+.. ......+.. +++.++.|+.+ ..+.+||+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~--r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVR--RGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSC--CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCC--ccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCC
Confidence 56667777654 468899988765 3222222211 111222222 56677777644 3688999887
Q ss_pred CceeeEEecccccceeEEEEECCCCCEEEEeeCC-----CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370 97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-----STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI 171 (228)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
.+-...-........-.++.+ +++.++.|+.+ ..+.+||+.+.+....-... .......+... ++..++.+
T Consensus 138 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~-~~~i~v~G 213 (301)
T 2vpj_A 138 DQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA-TKRSGAGVALL-NDHIYVVG 213 (301)
T ss_dssp TEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEE-TTEEEEEC
T ss_pred CeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCC-cccccceEEEE-CCEEEEEe
Confidence 654433222211111122222 56777777754 45899999877554332111 11111112221 34444444
Q ss_pred eCC----CCeEEEEEcCCcceeEEeecCC-CCCcEEEEeCCCCcEEEEecCCC-----CEEEeee
Q 040370 172 DEP----SNEIVIWDALTAEKVAKWSSNH-IGAPRWIEHSPAEAAFITCGTDR-----SVRFWKE 226 (228)
Q Consensus 172 ~~~----d~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~ 226 (228)
|.. -..+.+||..+.+-...-.... ......+.+ ++++++.||.++ .+.+||+
T Consensus 214 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~ 276 (301)
T 2vpj_A 214 GFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDP 276 (301)
T ss_dssp CBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEET
T ss_pred CCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcC
Confidence 432 2468999988765332211111 111122222 677788887653 4566664
No 299
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.12 E-value=0.0011 Score=48.43 Aligned_cols=191 Identities=14% Similarity=0.109 Sum_probs=100.7
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN 98 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 98 (228)
...+.++.|.+ +..++ ++..+.|.. ..+.++.-......... ...+..+.+.+++..++.+ .+|.|.. ....++
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~-~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~ 152 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKL-PGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGK 152 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTC-SSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTS
T ss_pred CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCC-CCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCC
Confidence 34688899986 44444 445564432 33334432222211001 2346677777666655555 4565432 223344
Q ss_pred eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeE
Q 040370 99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEI 178 (228)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 178 (228)
.-....... ...+..+.+.+++.+++.+...+..+-.|- .++.-..+.. ........+.+.+++..++++ . +|.+
T Consensus 153 tW~~~~~~~-~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~~~-~~~~~~~~~~~~~~g~~~~~~-~-~G~~ 227 (327)
T 2xbg_A 153 NWQALVQEA-IGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWEPHNR-TTSRRLHNMGFTPDGRLWMIV-N-GGKI 227 (327)
T ss_dssp SEEEEECSC-CCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCEEEEC-CSSSCEEEEEECTTSCEEEEE-T-TTEE
T ss_pred CCEEeecCC-CcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCceeECCC-CCCCccceeEECCCCCEEEEe-C-CceE
Confidence 444443322 446888999998887776654443444442 1222111211 123455667778888766553 3 4877
Q ss_pred EEEEcCCcceeEEeecC---CCCCcEEEEeCCCCcEEEEecCCCCE
Q 040370 179 VIWDALTAEKVAKWSSN---HIGAPRWIEHSPAEAAFITCGTDRSV 221 (228)
Q Consensus 179 ~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~dg~i 221 (228)
++.+...++.-...... +...+.++.+.+++..++.+. +|.+
T Consensus 228 ~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i 272 (327)
T 2xbg_A 228 AFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL 272 (327)
T ss_dssp EEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE
T ss_pred EEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE
Confidence 77643334433322112 223588899998877666654 5655
No 300
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.10 E-value=2.4e-05 Score=63.11 Aligned_cols=177 Identities=7% Similarity=-0.076 Sum_probs=102.2
Q ss_pred CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe-cCCeEEEEeCCC----CceeeEEecccccceeEE
Q 040370 40 HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS-KDGAIRLWDGVS----ANCVRSIVGAHGTAEATS 114 (228)
Q Consensus 40 d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~iwd~~~----~~~~~~~~~~~~~~~i~~ 114 (228)
.+.|+..++...+....... ...+..++|++.+..|+.+. ..+.|+.+++.. ......+... ......
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-----~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~--~~~P~g 457 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-----LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD--IQAPDG 457 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-----CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSC--C--CCC
T ss_pred ccceEEEeCCCCcceeeecc-----CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCC--CCCcce
Confidence 35677888876554333222 34567899998766665554 567899998875 2222111111 123456
Q ss_pred EEECCC-CCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC-CeEEEEEcCCcceeEEe
Q 040370 115 ANFTKD-QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS-NEIVIWDALTAEKVAKW 192 (228)
Q Consensus 115 ~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~i~d~~~~~~~~~~ 192 (228)
+++.+. ++++++-...+.|.++++.... ...+... .......+++.|.+.+++.+.... +.|..+++.... ...+
T Consensus 458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~-~~~l~~~-~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l 534 (699)
T 1n7d_A 458 LAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRE-QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSL 534 (699)
T ss_dssp EECCCSSSBCEECCTTTSCEEEEBSSSCC-EEEECCC-SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEE
T ss_pred EEEEeeCCcEEEEeccCCeEEEEecCCCc-eEEEEeC-CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEE
Confidence 788864 4555555567889999986543 3333211 123345678888777777665433 678887765332 2222
Q ss_pred ecCCCCCcEEEEeCCCCc-EEEEecCCCCEEEeee
Q 040370 193 SSNHIGAPRWIEHSPAEA-AFITCGTDRSVRFWKE 226 (228)
Q Consensus 193 ~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~ 226 (228)
........+.|+|+|++. ++++-+..+.|..+++
T Consensus 535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~ 569 (699)
T 1n7d_A 535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 569 (699)
T ss_dssp SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECS
T ss_pred EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEcc
Confidence 222334577899998654 4455555667777764
No 301
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.08 E-value=0.0012 Score=47.55 Aligned_cols=187 Identities=7% Similarity=0.069 Sum_probs=94.3
Q ss_pred CCCEEEEecCC----CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC------CeEEEEeCCCCce
Q 040370 30 SGDFLLAGTDH----PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD------GAIRLWDGVSANC 99 (228)
Q Consensus 30 ~~~~l~~~~~d----~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~~~ 99 (228)
++..++.|+.+ ..+.+||..+.+-......+.. ......+.+ +++.++.|+.+ ..+.+||+.+.+-
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W 130 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP--RDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESW 130 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC--CBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc--ccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence 56677777654 6788999988764433322211 111122222 56677777755 4688999887754
Q ss_pred eeEEecccccceeEEEEECCCCCEEEEeeC---------CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370 100 VRSIVGAHGTAEATSANFTKDQRFVLSCGK---------DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS 170 (228)
Q Consensus 100 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
...-........-..+.+ +++.++.|+. -..+.+||+.+.+....-... .......+... ++..++.
T Consensus 131 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~-~~~i~v~ 206 (306)
T 3ii7_A 131 HTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMI-EARKNHGLVFV-KDKIFAV 206 (306)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCS-SCCBSCEEEEE-TTEEEEE
T ss_pred EeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCcc-chhhcceEEEE-CCEEEEE
Confidence 332221111111122222 5666666653 345889999887543322111 11111122222 4444444
Q ss_pred eeCCC----CeEEEEEcCCcceeEEee-cCCCCCcEEEEeCCCCcEEEEecCC-----CCEEEeee
Q 040370 171 IDEPS----NEIVIWDALTAEKVAKWS-SNHIGAPRWIEHSPAEAAFITCGTD-----RSVRFWKE 226 (228)
Q Consensus 171 ~~~~d----~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~ 226 (228)
+|... ..+.+||..+.+-...-. .........+.+ ++.+++.||.+ ..+.+||+
T Consensus 207 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~ 270 (306)
T 3ii7_A 207 GGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNT 270 (306)
T ss_dssp CCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEET
T ss_pred eCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcC
Confidence 44311 468899987764322210 111112223333 67788888854 34666664
No 302
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.94 E-value=0.0023 Score=45.90 Aligned_cols=187 Identities=13% Similarity=0.083 Sum_probs=93.2
Q ss_pred CCCEEEEecCC-----CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC-----eEEEEeCCCCce
Q 040370 30 SGDFLLAGTDH-----PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG-----AIRLWDGVSANC 99 (228)
Q Consensus 30 ~~~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~~ 99 (228)
++..++.|+.+ ..+.+||..+.+-......+.. ......+.+ +++.++.|+.++ .+.+||+.+.+-
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W 136 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDR--RSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEW 136 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSC--CBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCcc--ccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeE
Confidence 56667777644 3588899887764433322211 111222222 567777777553 578889887654
Q ss_pred eeEEecccccceeEEEEECCCCCEEEEeeCC-------CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370 100 VRSIVGAHGTAEATSANFTKDQRFVLSCGKD-------STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID 172 (228)
Q Consensus 100 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
...-...........+.+ +++.++.|+.+ ..+.+||+.+.+....-... .......+... ++..++.+|
T Consensus 137 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~-~~~iyv~GG 212 (302)
T 2xn4_A 137 FHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMS-TRRSGAGVGVL-NNLLYAVGG 212 (302)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCS-SCCBSCEEEEE-TTEEEEECC
T ss_pred eecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCc-cccccccEEEE-CCEEEEECC
Confidence 332221111111122222 56666666643 35889999876544322111 11111122221 445555544
Q ss_pred CC----CCeEEEEEcCCcceeEEeecCCC-CCcEEEEeCCCCcEEEEecCCC-----CEEEeee
Q 040370 173 EP----SNEIVIWDALTAEKVAKWSSNHI-GAPRWIEHSPAEAAFITCGTDR-----SVRFWKE 226 (228)
Q Consensus 173 ~~----d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~ 226 (228)
.. -..+.+||..+.+-...-..... ..-..+.+ ++++++.||.++ .+.+||+
T Consensus 213 ~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 213 HDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp BSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEET
T ss_pred CCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcC
Confidence 32 14688999877643322111111 11122222 677888887654 3777775
No 303
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.90 E-value=0.0085 Score=51.25 Aligned_cols=174 Identities=11% Similarity=0.094 Sum_probs=96.3
Q ss_pred eEEEEEcccceEEeeeccceeeeccceeeEE---eCCC-CCeEEEEe----------cCCeEEEEeCCCCceeeEEeccc
Q 040370 42 IAHLYDVNTFQCYLSANVPEISVNGAINQVR---YSST-GGMYVTAS----------KDGAIRLWDGVSANCVRSIVGAH 107 (228)
Q Consensus 42 ~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~-~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~ 107 (228)
.|++.|..+.+.+..+.... ...+.+++ |..+ ..+++.|. ..|.|.++++..++....... .
T Consensus 808 ~i~lidp~t~~~i~~~~l~~---nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~-~ 883 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQ---NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEK-E 883 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCT---TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEE-E
T ss_pred EEEEEeCCCCeEEEEEeCCC---CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEE-E
Confidence 35666666665554444332 33344444 4433 46788775 358899999875433222222 2
Q ss_pred ccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEE--EcCC
Q 040370 108 GTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIW--DALT 185 (228)
Q Consensus 108 ~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~--d~~~ 185 (228)
-++.+++++-- +| +|++| ....+++|++...+.+. .... .-..+........+.+++++... ..+.+. +...
T Consensus 884 v~g~v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~-~~~~-~~~~i~~~~l~~~~~~I~vgD~~-~Sv~~~~y~~~~ 957 (1158)
T 3ei3_A 884 VKGAVYSMVEF-NG-KLLAS-INSTVRLYEWTTEKELR-TECN-HYNNIMALYLKTKGDFILVGDLM-RSVLLLAYKPME 957 (1158)
T ss_dssp ESSCEEEEEEE-TT-EEEEE-ETTEEEEEEECTTSCEE-EEEE-ECCCSCEEEEEEETTEEEEEESS-BCEEEEEEETTT
T ss_pred cCCcCEEEeee-CC-EEEEE-cCCEEEEEECCCCceEE-EEee-ccccEEEEEEeccCCEEEEEEhh-heEEEEEEEcCC
Confidence 25678877633 35 44444 35789999998655443 2111 11112222222346778887765 555554 4333
Q ss_pred cceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 186 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
.+....-...+...++++.+-.++ .++.+..+|.+.+.+.
T Consensus 958 ~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~ 997 (1158)
T 3ei3_A 958 GNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQK 997 (1158)
T ss_dssp TEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEE
T ss_pred CeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEec
Confidence 333333223455678888876444 6777888999888754
No 304
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.78 E-value=0.0034 Score=45.41 Aligned_cols=181 Identities=8% Similarity=0.012 Sum_probs=87.3
Q ss_pred eCCCCEEEEecC-----C------CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC--------Ce
Q 040370 28 HPSGDFLLAGTD-----H------PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD--------GA 88 (228)
Q Consensus 28 ~~~~~~l~~~~~-----d------~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~ 88 (228)
..++..++.|+. . ..+.+||..+.+-......+... .....+.+ +++.++.|+.+ ..
T Consensus 43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r--~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~ 118 (315)
T 4asc_A 43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPR--CLFGLGEA--LNSIYVVGGREIKDGERCLDS 118 (315)
T ss_dssp CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCE--ESCEEEEE--TTEEEEECCEESSTTCCBCCC
T ss_pred EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcch--hceeEEEE--CCEEEEEeCCcCCCCCcccce
Confidence 346777777773 1 12778888877643332222111 11122222 56666666632 45
Q ss_pred EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-C-----CeEEEEEccCCeeEEEEecceeeeeeeEEEEC
Q 040370 89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-D-----STVKLWEVSSGRLVKQYLGATHTQLRFQAVFN 162 (228)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (228)
+.+||+.+.+-...-........ .+++. .+++.++.|+. + ..+.+||+.+.+....-... .......+...
T Consensus 119 ~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~ 195 (315)
T 4asc_A 119 VMCYDRLSFKWGESDPLPYVVYG-HTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQ-TARSLFGATVH 195 (315)
T ss_dssp EEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCS-SCCBSCEEEEE
T ss_pred EEEECCCCCcEeECCCCCCcccc-eeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCC-CchhceEEEEE
Confidence 88999887653322111111111 12222 35667777775 2 46899999876543322111 11111112222
Q ss_pred CCCcEEEEeeCCC----CeEEEEEcCCcceeEEeecCCC-CCcEEEEeCCCCcEEEEecCC
Q 040370 163 DTEEFVLSIDEPS----NEIVIWDALTAEKVAKWSSNHI-GAPRWIEHSPAEAAFITCGTD 218 (228)
Q Consensus 163 ~~~~~~~~~~~~d----~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d 218 (228)
++..++.+|..+ ..+.+||..+.+-...-..... .....+.+ ++++++.||.+
T Consensus 196 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~ 253 (315)
T 4asc_A 196 -DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFA 253 (315)
T ss_dssp -TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEE
T ss_pred -CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCcc
Confidence 455555555422 2588899877643322111111 11122222 56777777763
No 305
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.77 E-value=0.0094 Score=47.61 Aligned_cols=200 Identities=8% Similarity=0.011 Sum_probs=117.3
Q ss_pred cceEEEEEeCCCCEEEEe-cCCCeEEEEEcccceEEeeeccc-ee-eeccceeeEEeCCCCC-eEEEEecCCeEEEEeCC
Q 040370 20 HNVRSVSFHPSGDFLLAG-TDHPIAHLYDVNTFQCYLSANVP-EI-SVNGAINQVRYSSTGG-MYVTASKDGAIRLWDGV 95 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~-~~-~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~ 95 (228)
..+.+++|.+.+..|+.+ ...+.|+.++++........... .. .....+..+++...++ +.++-+..+.|.+.++.
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~ 419 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD 419 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence 457889999866555544 45677888877643321111110 00 0033578899988655 44566677899999985
Q ss_pred CCceeeEEecccccceeEEEEECC-CCCEEEEeeCCC--eEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370 96 SANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDS--TVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID 172 (228)
Q Consensus 96 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
++....+.... .....++++.| .+..+.+-.... .|...++. |.....+... .-.....+++.+....++.+.
T Consensus 420 -G~~~~~l~~~~-l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~~~-~l~~P~gla~D~~~~~LYw~D 495 (628)
T 4a0p_A 420 -GRSVGVVLKGE-QDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLFFS-GLSKPIALALDSRLGKLFWAD 495 (628)
T ss_dssp -SCEEEEEEECT-TCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEECS-SCSCEEEEEEETTTTEEEEEE
T ss_pred -CCeEEEEEeCC-CCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEEec-cCCCccEEEEeCCCCEEEEEe
Confidence 55444443321 45678999999 555444443333 57667765 3333333221 233456788888888888877
Q ss_pred CCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 173 EPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 173 ~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
...+.|...++.. .....+.........+++... +.++.+=...+.|...|
T Consensus 496 ~~~~~I~~~~~dG-~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~ 546 (628)
T 4a0p_A 496 SDLRRIESSDLSG-ANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKID 546 (628)
T ss_dssp TTTTEEEEEETTS-CSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEeCCC-CceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEE
Confidence 7678999999854 444444333344567777654 44444444444554443
No 306
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.76 E-value=0.0019 Score=48.41 Aligned_cols=115 Identities=16% Similarity=0.178 Sum_probs=77.9
Q ss_pred ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEE------------eeeccc--eeeeccceeeEEeCCC---CCeEEEE
Q 040370 21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCY------------LSANVP--EISVNGAINQVRYSST---GGMYVTA 83 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~------------~~~~~~--~~~~~~~i~~~~~~~~---~~~l~~~ 83 (228)
.|..+..+|+|++||..+. ..|.|-.+..+... ..+... ......+|..+.|+|- +..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 6888999999999998875 47889888733211 111111 0101467999999994 5689999
Q ss_pred ecCCeEEEEeCCCCce-eeEEecc-------cccceeEEEEECCCCCEEEEee--CCCeEEEE
Q 040370 84 SKDGAIRLWDGVSANC-VRSIVGA-------HGTAEATSANFTKDQRFVLSCG--KDSTVKLW 136 (228)
Q Consensus 84 ~~dg~v~iwd~~~~~~-~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~--~d~~i~~w 136 (228)
..|+.|++||+..... ...+... .....+.+++|.+++-.|...+ ++|.|+-.
T Consensus 146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 9999999999986321 1122211 1125788999999887777744 77887654
No 307
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.74 E-value=0.0063 Score=44.88 Aligned_cols=106 Identities=13% Similarity=0.149 Sum_probs=61.5
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEE--eeeccceeeeccceeeEEeCCC---CCeEEEEec-C-----C
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCY--LSANVPEISVNGAINQVRYSST---GGMYVTASK-D-----G 87 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~-d-----g 87 (228)
-.....++|.|+|+++++ ..+|.|.+++ +++.. ......... ......++++|+ +..|+.+.. . +
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g-~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRG-ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCST-TCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecC-CCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 456789999999985554 5569999988 44322 111111111 346789999998 555554433 2 5
Q ss_pred eEEEEeCCCCce-----e-eEEec-ccccceeEEEEECCCCCEEEEee
Q 040370 88 AIRLWDGVSANC-----V-RSIVG-AHGTAEATSANFTKDQRFVLSCG 128 (228)
Q Consensus 88 ~v~iwd~~~~~~-----~-~~~~~-~~~~~~i~~~~~~~~~~~l~~~~ 128 (228)
.|..++...+.. + ..+.. .........++|.|+|.+.++.+
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 788888764321 1 11221 00011235799999997666643
No 308
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.74 E-value=0.0055 Score=44.14 Aligned_cols=187 Identities=13% Similarity=0.031 Sum_probs=92.4
Q ss_pred CCCEEEEecC----C-----CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC-----CeEEEEeCC
Q 040370 30 SGDFLLAGTD----H-----PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD-----GAIRLWDGV 95 (228)
Q Consensus 30 ~~~~l~~~~~----d-----~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~iwd~~ 95 (228)
++..++.|+. + ..+.+||..+.+-......+.. ......+.+ +++.++.|+.+ ..+.+||+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 145 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVP--RNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPE 145 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSC--CBTCEEEEE--TTEEEEECCEETTEECCCEEEEETT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcC--ccccEEEEE--CCEEEEEcCCCCCcccccEEEECCC
Confidence 5666667665 2 4578889887764433322211 112222223 56667776643 468889988
Q ss_pred CCceeeEEecccccceeEEEEECCCCCEEEEeeCC-----CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370 96 SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-----STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS 170 (228)
Q Consensus 96 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
+.+-...-........-..+.+ +++.++.|+.+ ..+.+||+.+.+....-...........+.+ ++..++.
T Consensus 146 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~ 221 (308)
T 1zgk_A 146 RDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAA 221 (308)
T ss_dssp TTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEE
T ss_pred CCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEE
Confidence 7653322111111111122222 56777777654 4589999987654332111111111112222 4444454
Q ss_pred eeCC----CCeEEEEEcCCcceeEEeecCC-CCCcEEEEeCCCCcEEEEecCCC-----CEEEeee
Q 040370 171 IDEP----SNEIVIWDALTAEKVAKWSSNH-IGAPRWIEHSPAEAAFITCGTDR-----SVRFWKE 226 (228)
Q Consensus 171 ~~~~----d~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~ 226 (228)
+|.. -..+.+||+.+.+-...-.... ......+.+ ++++++.||.++ .+.+||+
T Consensus 222 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~ 285 (308)
T 1zgk_A 222 GGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDP 285 (308)
T ss_dssp CCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEET
T ss_pred eCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcC
Confidence 4432 1568999987764332211111 111122222 677788887543 3566664
No 309
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.72 E-value=0.011 Score=47.07 Aligned_cols=194 Identities=7% Similarity=-0.003 Sum_probs=110.3
Q ss_pred cceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeEEEEeCCCC
Q 040370 20 HNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAIRLWDGVSA 97 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~ 97 (228)
..+.+++|.+.+..|+ +-...+.|+.++++........... -.....+++.+. +++.++-+..+.|.+.++...
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~----~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~ 424 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQ----IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT 424 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS----CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECC----CCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC
Confidence 3467888888554444 4445778888887653322222111 245678888864 445556566789999998644
Q ss_pred ceeeEEecccccceeEEEEECCCCCEEEEeeC--CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC
Q 040370 98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCGK--DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS 175 (228)
Q Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 175 (228)
. ...+... .-....++++.|...+|+.+.. .+.|...++.. .....+.. ..-.....+++++.+..++.+....
T Consensus 425 ~-~~~l~~~-~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG-~~~~~l~~-~~l~~P~GlalD~~~~~LY~aD~~~ 500 (619)
T 3s94_A 425 M-RKILISE-DLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDG-SDRVVLVN-TSLGWPNGLALDYDEGKIYWGDAKT 500 (619)
T ss_dssp S-CEEEECT-TCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEEC-SSCSCEEEEEEETTTTEEEEEETTT
T ss_pred e-EEEEEEC-CCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCC-CccEEEEe-CCCCCCeeeEEcccCCEEEEEECCC
Confidence 3 3333322 1446789999996545554432 35677777653 33333321 1233456788888888888877777
Q ss_pred CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEE
Q 040370 176 NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRF 223 (228)
Q Consensus 176 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v 223 (228)
+.|..+++..... ..+.........+++...+ .+.++-...+.|..
T Consensus 501 ~~I~~~~~dG~~~-~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~ 546 (619)
T 3s94_A 501 DKIEVMNTDGTGR-RVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIER 546 (619)
T ss_dssp TEEEEEESSSCCC-EEEEECCCCSSCCEEEETT-EEEEECTTSSCEEE
T ss_pred CEEEEEecCCCce-EEEeccCCCCcEEEEEECC-EEEEeecCCCeEEE
Confidence 8999999854433 2222222223345555433 33333333444443
No 310
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.63 E-value=0.0097 Score=43.86 Aligned_cols=145 Identities=12% Similarity=0.161 Sum_probs=83.5
Q ss_pred cceEEEEEeC--CCC-EEEEe-c--CCCeEEEEEcccce-EEeeeccceeeeccceeeEEeCCCCCeEEEEe--------
Q 040370 20 HNVRSVSFHP--SGD-FLLAG-T--DHPIAHLYDVNTFQ-CYLSANVPEISVNGAINQVRYSSTGGMYVTAS-------- 84 (228)
Q Consensus 20 ~~v~~~~~~~--~~~-~l~~~-~--~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------- 84 (228)
-....+.+.+ ++. +|+++ . .+..|.+|+++... ............-...+.+.+.++|.+.++..
T Consensus 112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~ 191 (355)
T 3sre_A 112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL 191 (355)
T ss_dssp CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHH
T ss_pred eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccc
Confidence 3667777766 343 34433 2 25688888876532 11111111111134678999999998777654
Q ss_pred ---------cCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEee-CCCeEEEEEccC-Cee--EEEEecce
Q 040370 85 ---------KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCG-KDSTVKLWEVSS-GRL--VKQYLGAT 151 (228)
Q Consensus 85 ---------~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~~-~~~--~~~~~~~~ 151 (228)
..|.|.-+|. ++. ..+... -...+.++|+||++.++.+. ..+.|..||+.. ++. ...+.
T Consensus 192 ~~~e~~~~~~~g~vyr~d~--~~~-~~~~~~--l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~--- 263 (355)
T 3sre_A 192 KSWEMHLGLAWSFVTYYSP--NDV-RVVAEG--FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS--- 263 (355)
T ss_dssp HHHHHHTTCCCEEEEEECT--TCC-EEEEEE--ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---
T ss_pred ccchhhccCCccEEEEEEC--CeE-EEeecC--CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---
Confidence 1245666665 332 222221 33568899999998776654 567899999863 322 12221
Q ss_pred eeeeeeEEEECC-CCcEEEEee
Q 040370 152 HTQLRFQAVFND-TEEFVLSID 172 (228)
Q Consensus 152 ~~~~~~~~~~~~-~~~~~~~~~ 172 (228)
.....-.++..+ +|.+.+++.
T Consensus 264 ~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 264 FDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp CSSEEEEEEECTTTCCEEEEEE
T ss_pred CCCCCceEEEeCCCCcEEEEec
Confidence 234455677788 477766544
No 311
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.59 E-value=0.0095 Score=42.71 Aligned_cols=150 Identities=8% Similarity=0.088 Sum_probs=76.1
Q ss_pred CCCEEEEecCCC-----eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC-------CeEEEEeCCCC
Q 040370 30 SGDFLLAGTDHP-----IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD-------GAIRLWDGVSA 97 (228)
Q Consensus 30 ~~~~l~~~~~d~-----~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------g~v~iwd~~~~ 97 (228)
++..++.|+.++ .+.+||+.+.+-......+.. .....++.+ +++.++.|+.+ ..+.+||+.+.
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~ 183 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTR--RSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTN 183 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSC--CBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTT
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCc--ccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCC
Confidence 566667776543 577888887664433222211 111122222 56666666542 35889998876
Q ss_pred ceeeEEecccccceeEEEEECCCCCEEEEeeCC-----CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370 98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-----STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID 172 (228)
Q Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
+-...-...........+.+ +++.++.|+.+ ..+.+||+.+.+....-... .......++. .++..++.+|
T Consensus 184 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~-~~~~i~v~GG 259 (302)
T 2xn4_A 184 EWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN-MCRRNAGVCA-VNGLLYVVGG 259 (302)
T ss_dssp EEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEE-ETTEEEEECC
T ss_pred cEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC-CccccCeEEE-ECCEEEEECC
Confidence 54332211111111122222 56777777764 36899999876544322111 1111111222 2455555544
Q ss_pred CCC----CeEEEEEcCCcc
Q 040370 173 EPS----NEIVIWDALTAE 187 (228)
Q Consensus 173 ~~d----~~i~i~d~~~~~ 187 (228)
... ..+.+||..+.+
T Consensus 260 ~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 260 DDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp BCSSSBCCCEEEEETTTTE
T ss_pred cCCCcccccEEEEcCCCCe
Confidence 321 348889987654
No 312
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.59 E-value=0.0094 Score=42.67 Aligned_cols=187 Identities=12% Similarity=0.058 Sum_probs=93.2
Q ss_pred CCCEEEEec-CC-----CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC-----CeEEEEeCCCCc
Q 040370 30 SGDFLLAGT-DH-----PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD-----GAIRLWDGVSAN 98 (228)
Q Consensus 30 ~~~~l~~~~-~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~ 98 (228)
++..++.|+ .+ ..+.+||..+.+-......+.. ......+. .++..++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~ 89 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRK--RRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADE 89 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSC--CBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChh--hccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCC
Confidence 455666666 32 3688999888764433222211 11112222 256677777754 468999988766
Q ss_pred ---eeeEEecccccceeEEEEECCCCCEEEEeeCC-----CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370 99 ---CVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-----STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS 170 (228)
Q Consensus 99 ---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
-...-...........+.+ +++.++.|+.+ ..+.+||+.+.+....-...........+.. ++..++.
T Consensus 90 ~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~ 165 (301)
T 2vpj_A 90 DGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCL 165 (301)
T ss_dssp TCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEE
T ss_pred CCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEE
Confidence 3322211111111222222 56777777654 3688999887664433221111111112222 4555455
Q ss_pred eeCC----CCeEEEEEcCCcceeEEeecCCC-CCcEEEEeCCCCcEEEEecCC-----CCEEEeee
Q 040370 171 IDEP----SNEIVIWDALTAEKVAKWSSNHI-GAPRWIEHSPAEAAFITCGTD-----RSVRFWKE 226 (228)
Q Consensus 171 ~~~~----d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~ 226 (228)
+|.. -..+.+||..+.+-...-..... .....+.+ ++.+++.|+.+ ..+.+||+
T Consensus 166 GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~ 229 (301)
T 2vpj_A 166 GGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNI 229 (301)
T ss_dssp CCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEET
T ss_pred CCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeC
Confidence 4432 14688999877643322111111 11122222 56777777764 35777765
No 313
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.50 E-value=0.015 Score=42.88 Aligned_cols=144 Identities=15% Similarity=0.166 Sum_probs=80.8
Q ss_pred ceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc-eeeEEe-cccccceeEEEEECCC---CCEEEEeeC----C----CeE
Q 040370 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSAN-CVRSIV-GAHGTAEATSANFTKD---QRFVLSCGK----D----STV 133 (228)
Q Consensus 67 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~-~~~~~~~i~~~~~~~~---~~~l~~~~~----d----~~i 133 (228)
....++|.|+|+ |+.+..+|.|+++| ..++ .+..+. ..........++++|+ +..|+.+.. + ..|
T Consensus 30 ~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 30 VPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp CEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 467899999997 45556669999997 3454 111111 1111345789999997 455554433 3 567
Q ss_pred EEEEccCC--e-----eE-EEEecceeeeeeeEEEECCCCcEEEEeeCC------------CCeEEEEEcCCcc------
Q 040370 134 KLWEVSSG--R-----LV-KQYLGATHTQLRFQAVFNDTEEFVLSIDEP------------SNEIVIWDALTAE------ 187 (228)
Q Consensus 134 ~~wd~~~~--~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------d~~i~i~d~~~~~------ 187 (228)
..|+.... . .+ ..+.. ........+.|.|++...++.+.. .|.|.-++.. ++
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~-~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~np 185 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPG-AYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADNP 185 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEEC-CSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCC-CCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCCC
Confidence 77887643 1 11 11111 111224568899999876665431 2456666653 22
Q ss_pred --eeEEeecCCCCCcEEEEeCC-CCcEEEEe
Q 040370 188 --KVAKWSSNHIGAPRWIEHSP-AEAAFITC 215 (228)
Q Consensus 188 --~~~~~~~~~~~~v~~~~~~~-~~~~l~s~ 215 (228)
....+..++. ....++|+| ++.++++-
T Consensus 186 f~~~~i~a~G~r-np~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 186 FPNSPIWSYGHR-NPQGIDWHRASGVMVATE 215 (354)
T ss_dssp STTCCEEEECCS-CCCEEEECTTTCCEEEEE
T ss_pred CCCCcEEEEccC-CcceEEEeCCCCCEEEEe
Confidence 1112223443 356799999 66655543
No 314
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.49 E-value=0.02 Score=43.85 Aligned_cols=107 Identities=10% Similarity=0.176 Sum_probs=61.6
Q ss_pred ceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeE--Eecc----cccceeEEEEECCC---CCEEEEeeC--------
Q 040370 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRS--IVGA----HGTAEATSANFTKD---QRFVLSCGK-------- 129 (228)
Q Consensus 67 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~----~~~~~i~~~~~~~~---~~~l~~~~~-------- 129 (228)
....|+|.|+|+++++-...+.|++++..+++.... +... ........++|+|+ +..|+.+..
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 457899999998766654445788888655543222 2110 12456779999995 555544432
Q ss_pred -----CCeEEEEEccCC--e-----eEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370 130 -----DSTVKLWEVSSG--R-----LVKQYLGATHTQLRFQAVFNDTEEFVLSIDE 173 (228)
Q Consensus 130 -----d~~i~~wd~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
...|.-+++... + .+..............+.|.|++.+.++.+.
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665432 1 1111111111234578899999987777664
No 315
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.47 E-value=0.015 Score=42.04 Aligned_cols=181 Identities=12% Similarity=0.050 Sum_probs=86.2
Q ss_pred eCCCCEEEEecC----CC-------eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC-------CeE
Q 040370 28 HPSGDFLLAGTD----HP-------IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD-------GAI 89 (228)
Q Consensus 28 ~~~~~~l~~~~~----d~-------~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------g~v 89 (228)
..++..++.|+. ++ .+.+||..+.+-......+.. ......+.+ +++.++.|+.+ ..+
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSA--RCLFGLGEV--DDKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSC--BCSCEEEEE--TTEEEEEEEEBTTTCCEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcc--ccccceEEE--CCEEEEEcCccCCCCcccceE
Confidence 346777777773 11 277888877664433222221 111122222 56677777754 358
Q ss_pred EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC------CCeEEEEEccCCeeEEEEecceeeeeeeEEEECC
Q 040370 90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK------DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFND 163 (228)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (228)
.+||+.+.+-...-.... ...-.+++. .+++.++.|+. -..+.+||+.+.+....-... .......++..
T Consensus 130 ~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~- 205 (318)
T 2woz_A 130 LCYDPVAAKWSEVKNLPI-KVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMK-TPRSMFGVAIH- 205 (318)
T ss_dssp EEEETTTTEEEEECCCSS-CEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEE-
T ss_pred EEEeCCCCCEeECCCCCC-cccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCC-CCcccceEEEE-
Confidence 888988765433221111 111112222 35666677764 235899999887644322111 11111122222
Q ss_pred CCcEEEEeeCCC----CeEEEEEcCCcceeEEeecCC-CCCcEEEEeCCCCcEEEEecCC
Q 040370 164 TEEFVLSIDEPS----NEIVIWDALTAEKVAKWSSNH-IGAPRWIEHSPAEAAFITCGTD 218 (228)
Q Consensus 164 ~~~~~~~~~~~d----~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d 218 (228)
++..++.+|..+ ..+.+||..+.+-...-.... ......+.+ ++++++.||.+
T Consensus 206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~ 263 (318)
T 2woz_A 206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL--AGSLYAIGGFA 263 (318)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE--CCEEEEECCee
Confidence 445445544322 357788987764322210111 111122222 56777777754
No 316
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.45 E-value=0.018 Score=42.52 Aligned_cols=106 Identities=11% Similarity=0.064 Sum_probs=61.1
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccce-EEeeeccceeeeccceeeEEeCCC---CCeEEEEec----C----
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ-CYLSANVPEISVNGAINQVRYSST---GGMYVTASK----D---- 86 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~----d---- 86 (228)
-.....++|.|++++++ +..+|.|++++ .+++ .+......... ......|+++|+ +..|+.+.. +
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g-~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVG-EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCST-TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecC-CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 45678999999998555 45569999887 3444 21111110111 346789999997 444544433 3
Q ss_pred CeEEEEeCCCC--c-----ee-eEEecccccceeEEEEECCCCCEEEEee
Q 040370 87 GAIRLWDGVSA--N-----CV-RSIVGAHGTAEATSANFTKDQRFVLSCG 128 (228)
Q Consensus 87 g~v~iwd~~~~--~-----~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 128 (228)
..|..++.... . .+ ..+.... ......+.|.|+|.++++.+
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~-~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAY-IHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCS-SCCCCCEEECTTSCEEEECC
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCC-CcCCceEEECCCCcEEEEEC
Confidence 56777776543 1 11 1122110 11235689999998766644
No 317
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.43 E-value=0.0021 Score=43.74 Aligned_cols=109 Identities=10% Similarity=0.021 Sum_probs=63.5
Q ss_pred cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeecc-cee---eeccceeeEEeCCCCCeEEEEecCCeEEEEeCC
Q 040370 20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANV-PEI---SVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV 95 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~ 95 (228)
..+..++|+|++.+.++ .+|.+.-.+..+.....-... ... . -....++.|.|+|.+.++ .||.|.-++..
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~G-w~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGG-WNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSC-GGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccc-cccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 47889999999987666 667655544433111000000 000 0 112478999999987766 56999888764
Q ss_pred CCceee-----EEecccccceeEEEEECCCCCEEEEeeCCCeEEE
Q 040370 96 SANCVR-----SIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKL 135 (228)
Q Consensus 96 ~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~ 135 (228)
+..... .......=..+..+.+.|+|.+.+.. |+.++-
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence 322111 11111112467899999999876666 777543
No 318
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.41 E-value=0.018 Score=41.49 Aligned_cols=187 Identities=12% Similarity=0.001 Sum_probs=91.9
Q ss_pred CCCEEEEecC----CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec----C-----CeEEEEeCCC
Q 040370 30 SGDFLLAGTD----HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK----D-----GAIRLWDGVS 96 (228)
Q Consensus 30 ~~~~l~~~~~----d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d-----g~v~iwd~~~ 96 (228)
++..++.|+. -..+.+||..+.+-......+.. ...-..+.. ++..++.|+. + ..+.+||+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVP--RSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSC--CBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcc--cccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 5666777763 24688999988764433222211 111122222 5666777665 2 4688899887
Q ss_pred CceeeEEecccccceeEEEEECCCCCEEEEeeCC-----CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370 97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-----STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI 171 (228)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
.+-...-...........+.+ +++.++.|+.+ ..+.+||+.+.+....-...........+.+ ++..++.+
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~G 175 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVG 175 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEC
T ss_pred CeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEe
Confidence 653322111111111122222 56677777643 3588999987654332211111111112222 44444444
Q ss_pred eCC----CCeEEEEEcCCcceeEEeecCC-CCCcEEEEeCCCCcEEEEecCC-----CCEEEeee
Q 040370 172 DEP----SNEIVIWDALTAEKVAKWSSNH-IGAPRWIEHSPAEAAFITCGTD-----RSVRFWKE 226 (228)
Q Consensus 172 ~~~----d~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~ 226 (228)
|.. -..+.+||..+.+-...-.... ...-..+.+ ++++++.||.+ ..+.+||+
T Consensus 176 G~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 238 (308)
T 1zgk_A 176 GFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDV 238 (308)
T ss_dssp CBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEET
T ss_pred CCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeC
Confidence 432 1468899987664322111111 111222333 67777777764 44777765
No 319
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.40 E-value=0.021 Score=42.12 Aligned_cols=145 Identities=14% Similarity=0.174 Sum_probs=80.1
Q ss_pred ceeeEEeCCCCCeEEEEecCCeEEEEeCCCCcee--eEEe-cccccceeEEEEECCC---CCEEEEeeC-C-----CeEE
Q 040370 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCV--RSIV-GAHGTAEATSANFTKD---QRFVLSCGK-D-----STVK 134 (228)
Q Consensus 67 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~--~~~~-~~~~~~~i~~~~~~~~---~~~l~~~~~-d-----~~i~ 134 (228)
....++|.|+|++++ +..+|.|.+++ .++.. ..+. ..........++++|+ +..|+.+.. . +.|.
T Consensus 32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 457899999998554 55679999998 34321 1111 1111346789999998 555554433 2 5788
Q ss_pred EEEccCCee-----EEE-Eec-ceeeeeeeEEEECCCCcEEEEeeCC------------CCeEEEEEcCCc---------
Q 040370 135 LWEVSSGRL-----VKQ-YLG-ATHTQLRFQAVFNDTEEFVLSIDEP------------SNEIVIWDALTA--------- 186 (228)
Q Consensus 135 ~wd~~~~~~-----~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------------d~~i~i~d~~~~--------- 186 (228)
.++...+.. +.. +.. .........+.|.|++...++.+.. .+.|.-++....
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~ 188 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG 188 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence 888764321 111 210 0111233578899999766664421 156666665420
Q ss_pred ---ceeEEeecCCCCCcEEEEeCC-CCcEEEEe
Q 040370 187 ---EKVAKWSSNHIGAPRWIEHSP-AEAAFITC 215 (228)
Q Consensus 187 ---~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~ 215 (228)
.....+..++. ....++|+| ++.++++-
T Consensus 189 ~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d 220 (352)
T 2ism_A 189 RRGARPEVYSLGHR-NPQGLAWHPKTGELFSSE 220 (352)
T ss_dssp CTTSCTTEEEECCS-EECCCEECTTTCCEEEEE
T ss_pred CCCCCccEEEEcCC-CcccEEEECCCCCEEEEE
Confidence 11111212332 356789999 66655543
No 320
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.40 E-value=0.021 Score=41.98 Aligned_cols=147 Identities=10% Similarity=0.069 Sum_probs=84.1
Q ss_pred cceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeE--Ee--cccccceeEEEEECCC---CCEEEEe---eCCCeEEE
Q 040370 66 GAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRS--IV--GAHGTAEATSANFTKD---QRFVLSC---GKDSTVKL 135 (228)
Q Consensus 66 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~--~~--~~~~~~~i~~~~~~~~---~~~l~~~---~~d~~i~~ 135 (228)
.....|+|.|+|.++++--..|.|++++...++.... +. ..........++++|+ +..|+.. ..++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 3467899999999777665589999998765543221 11 0122456789999995 3444432 24456666
Q ss_pred EEccCC----------eeEE-EEecceeeeeeeEEEECCCCcEEEEeeCC------------CCeEEEEEcCCcc-----
Q 040370 136 WEVSSG----------RLVK-QYLGATHTQLRFQAVFNDTEEFVLSIDEP------------SNEIVIWDALTAE----- 187 (228)
Q Consensus 136 wd~~~~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------d~~i~i~d~~~~~----- 187 (228)
|.+..+ +.+. .+.. ........+.|.|++.+.++.+.. .|.|.-.+....-
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP 190 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPK-GVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP 190 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECC-CSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred EEeCCCCcccccCCCcEEEEEcCCC-CCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence 666541 1111 1111 112234568899999877776531 2555555543220
Q ss_pred --eeEEeecCCCCCcEEEEeCCCCcEEEE
Q 040370 188 --KVAKWSSNHIGAPRWIEHSPAEAAFIT 214 (228)
Q Consensus 188 --~~~~~~~~~~~~v~~~~~~~~~~~l~s 214 (228)
....+..+|. ....++|+|++.+.++
T Consensus 191 f~~~~i~a~G~R-Np~Gla~dp~G~L~~~ 218 (347)
T 3das_A 191 FPGSPVYSYGHR-NVQGLAWDDKQRLFAS 218 (347)
T ss_dssp STTCCEEEBCCS-BCCEEEECTTCCEEEE
T ss_pred CCCCeEEeeCCC-CcceEEECCCCCEEEE
Confidence 1112223554 3567999998776554
No 321
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.39 E-value=0.011 Score=44.33 Aligned_cols=106 Identities=9% Similarity=0.218 Sum_probs=69.9
Q ss_pred CCCCEEEEeeCCCeEEEEEccCCeeEEEEecce--eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc---------
Q 040370 119 KDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT--HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE--------- 187 (228)
Q Consensus 119 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--------- 187 (228)
.++..++.+ .++.||.-++.....-+.+.... ....+..+..+|+|.+++..|. ..|.|-.+..+.
T Consensus 30 ~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~--~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 30 QNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND--NEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp TTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS--SEEEEEECCTTCSCCCCHHHH
T ss_pred cCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC--CeEEEEEecCccccCcccccc
Confidence 345555544 34677777776443333333321 1224567999999999999875 789998887322
Q ss_pred ---eeEEeecC-----CCCCcEEEEeCC---CCcEEEEecCCCCEEEeeec
Q 040370 188 ---KVAKWSSN-----HIGAPRWIEHSP---AEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 188 ---~~~~~~~~-----~~~~v~~~~~~~---~~~~l~s~~~dg~i~vwd~~ 227 (228)
....+..+ ...+|..+.|+| .+..|++-..|+.|++||+.
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~ 157 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDIL 157 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETT
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcc
Confidence 11122111 357899999999 45688989999999999975
No 322
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.29 E-value=0.069 Score=45.85 Aligned_cols=192 Identities=12% Similarity=0.111 Sum_probs=101.7
Q ss_pred ecCcceEEEEEeCC------CCEEEEecC-CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370 17 QDTHNVRSVSFHPS------GDFLLAGTD-HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI 89 (228)
Q Consensus 17 ~~~~~v~~~~~~~~------~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 89 (228)
.-...|.|+++.|. ++++++|.. |++++|+++.+.+.+.............+.-+.+ ....+|..|-.||.+
T Consensus 551 ~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~igl~dG~l 629 (1158)
T 3ei3_A 551 EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCALGDGAL 629 (1158)
T ss_dssp ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEEETTSEE
T ss_pred CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEEeCCCeE
Confidence 34678999999863 468999986 9999999998876654433321110122333333 234578899999998
Q ss_pred EEEeC--CCCceeeE--EecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCC-
Q 040370 90 RLWDG--VSANCVRS--IVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT- 164 (228)
Q Consensus 90 ~iwd~--~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~- 164 (228)
.-+.+ .+++.... .... ..++.-..+...+..-+-+..+....+|--+ ++....-.. .........|+..
T Consensus 630 ~~~~~d~~tg~l~d~r~~~LG--~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~--~~~v~~~~~F~se~ 704 (1158)
T 3ei3_A 630 FYFGLNIETGLLSDRKKVTLG--TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVN--LKEVNYMCPLNSDG 704 (1158)
T ss_dssp EEEEECTTTCCEEEEEEEECC--SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBS--SSCCCEEEEECCSS
T ss_pred EEEEEcCCCCccccceeEEcC--CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccC--hHHhceEeccCccc
Confidence 66654 34443322 1221 3344444444434333333334545555433 332211111 1112223344432
Q ss_pred -CcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEec
Q 040370 165 -EEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCG 216 (228)
Q Consensus 165 -~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 216 (228)
..-++... ++.++|..+...+........-...+..++++|+.+.++.+.
T Consensus 705 ~~~g~v~~~--~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~ 755 (1158)
T 3ei3_A 705 YPDSLALAN--NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS 755 (1158)
T ss_dssp STTEEEEEC--SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEE
T ss_pred CCCcEEEEc--CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEE
Confidence 22333333 356998887554433322223456789999999777655443
No 323
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.28 E-value=0.05 Score=44.05 Aligned_cols=157 Identities=11% Similarity=0.145 Sum_probs=82.4
Q ss_pred CCCEEEEecCC------CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC--eEEEEeCCCCceee
Q 040370 30 SGDFLLAGTDH------PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG--AIRLWDGVSANCVR 101 (228)
Q Consensus 30 ~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~ 101 (228)
+++.++.|+.+ ..+.+||..+.+-......+. ...-.+++...+++.++.|+.++ .+.+||+.+.+-..
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~---~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~ 527 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSH---TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKD 527 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSB---CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCC---CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEE
Confidence 66677777643 357889988865433322221 11112233323778888887654 69999988765332
Q ss_pred EEe---cccccceeEEEEECCC-CCEEEEeeC--C-----CeEEEEEccCCee-----EEEEec-ceeeeeeeEEEECCC
Q 040370 102 SIV---GAHGTAEATSANFTKD-QRFVLSCGK--D-----STVKLWEVSSGRL-----VKQYLG-ATHTQLRFQAVFNDT 164 (228)
Q Consensus 102 ~~~---~~~~~~~i~~~~~~~~-~~~l~~~~~--d-----~~i~~wd~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~ 164 (228)
.-. .........++.+..+ ++.++.|+. + ..+..||+.+.+. -..+.. .........+....+
T Consensus 528 ~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~ 607 (695)
T 2zwa_A 528 VTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITP 607 (695)
T ss_dssp CCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEET
T ss_pred ccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCC
Confidence 221 1111112233445554 667777765 2 4589999988762 112211 101111122222232
Q ss_pred CcEEEEeeCC-------CCeEEEEEcCCccee
Q 040370 165 EEFVLSIDEP-------SNEIVIWDALTAEKV 189 (228)
Q Consensus 165 ~~~~~~~~~~-------d~~i~i~d~~~~~~~ 189 (228)
+..++.+|.. ...+.+||..+.+-.
T Consensus 608 ~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 608 RKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp TEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred CEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 5555555431 356999998876543
No 324
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.28 E-value=0.025 Score=40.53 Aligned_cols=185 Identities=7% Similarity=0.011 Sum_probs=92.5
Q ss_pred CEEEEecC--CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC----CeEEEEeCCCCceeeEEec
Q 040370 32 DFLLAGTD--HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD----GAIRLWDGVSANCVRSIVG 105 (228)
Q Consensus 32 ~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~~~ 105 (228)
..++.|+. ...+.+||..+.+-......+.. ......+.+ ++..++.|+.+ ..+.+||+.+.+-...-..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~ 88 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEK--RRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP 88 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCC--CBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcc--cceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence 34555654 35788999988764433322221 111222222 56677777754 6788999887754333222
Q ss_pred ccccceeEEEEECCCCCEEEEeeCC------CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC-----
Q 040370 106 AHGTAEATSANFTKDQRFVLSCGKD------STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP----- 174 (228)
Q Consensus 106 ~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 174 (228)
.........+.+ +++.++.|+.+ ..+.+||+.+.+....-... .......++. -++...+.+|..
T Consensus 89 p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~-~~~~iyv~GG~~~~~~~ 164 (306)
T 3ii7_A 89 PTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSML-TQRCSHGMVE-ANGLIYVCGGSLGNNVS 164 (306)
T ss_dssp SSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS-SCCBSCEEEE-ETTEEEEECCEESCTTT
T ss_pred CccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc-CCcceeEEEE-ECCEEEEECCCCCCCCc
Confidence 211112222222 56777777765 45899999887643321111 1111111222 244444444321
Q ss_pred ---CCeEEEEEcCCcceeEEeecCCC-CCcEEEEeCCCCcEEEEecCCC-----CEEEeee
Q 040370 175 ---SNEIVIWDALTAEKVAKWSSNHI-GAPRWIEHSPAEAAFITCGTDR-----SVRFWKE 226 (228)
Q Consensus 175 ---d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~ 226 (228)
-..+.+||..+.+-...-..... ..-..+.+ ++++++.||.++ .+.+||+
T Consensus 165 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~ 223 (306)
T 3ii7_A 165 GRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDI 223 (306)
T ss_dssp CEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEET
T ss_pred ccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeC
Confidence 24588999877643222111111 11122222 667777777543 4666664
No 325
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.26 E-value=0.016 Score=41.80 Aligned_cols=110 Identities=12% Similarity=0.166 Sum_probs=59.2
Q ss_pred CCCEEEEecCC--------CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-C-----CeEEEEeCC
Q 040370 30 SGDFLLAGTDH--------PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK-D-----GAIRLWDGV 95 (228)
Q Consensus 30 ~~~~l~~~~~d--------~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-----g~v~iwd~~ 95 (228)
++..++.|+.+ ..+.+||..+.+-......+.. ...-..+. -+++.++.|+. + ..+.+||+.
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~ 173 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYV--VYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPK 173 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSC--CBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETT
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCc--ccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCC
Confidence 55666666632 4588999988764333222211 11112222 35667777765 2 468999988
Q ss_pred CCceeeEEecccccceeEEEEECCCCCEEEEeeCCC-----eEEEEEccCCeeEE
Q 040370 96 SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS-----TVKLWEVSSGRLVK 145 (228)
Q Consensus 96 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~ 145 (228)
+.+-...-........-.++.+ +++.++.|+.++ .+.+||+.+.+...
T Consensus 174 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 226 (315)
T 4asc_A 174 KFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAP 226 (315)
T ss_dssp TTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred CCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence 7653322111111111122222 567777777654 58899998775443
No 326
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.18 E-value=0.036 Score=40.24 Aligned_cols=191 Identities=10% Similarity=0.127 Sum_probs=116.4
Q ss_pred EEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC-ceeeEEe
Q 040370 26 SFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA-NCVRSIV 104 (228)
Q Consensus 26 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~ 104 (228)
-.+|..+.+|.-. ..+++|+|+++.+.++.... ...|.-=.|-.+.. |+-.+ +..|+.|++... .+.+.+.
T Consensus 73 IMnP~~~ViALra-g~~LQiFnletK~klks~~~-----~e~VvfWkWis~~~-L~lVT-~taVyHWs~~~~s~P~kvFd 144 (365)
T 2xzh_A 73 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-----TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFD 144 (365)
T ss_dssp EECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-----SSCEEEEEECSSSE-EEEEE-SSEEEEEESSTTCCCEEEEE
T ss_pred eeCCCccEEEEec-CCeEEEechHHhhhhcceec-----CCccEEEEecCCCe-EEEEc-CCcEEEEcccCCCCCceeee
Confidence 3478888777654 57899999999888777665 45677777765443 44333 468999999754 4444554
Q ss_pred ccc--ccceeEEEEECCCCCEEEEee-------CCCeEEEEEccCCeeEEEEecceeeeeeeEEEE--CCCCcEEEEeeC
Q 040370 105 GAH--GTAEATSANFTKDQRFVLSCG-------KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVF--NDTEEFVLSIDE 173 (228)
Q Consensus 105 ~~~--~~~~i~~~~~~~~~~~l~~~~-------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 173 (228)
.+. ....|..-..+++.++++..+ -.|.+.+|..+. +..+.+++|. ..-..+.. ++....+++-+.
T Consensus 145 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGha--a~F~~~~~~g~~~~~~lf~fa~ 221 (365)
T 2xzh_A 145 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHA--ASFAQFKMEGNAEESTLFCFAV 221 (365)
T ss_dssp CCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSE--EEEEEECCTTCSSCEEEEEEEE
T ss_pred cchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeee--eeeEEEecCCCCCCceEEEEEE
Confidence 432 145677777788888876554 236788888765 3445555532 22212211 122223333222
Q ss_pred ---CCCeEEEEEcCCc---ce-----eEEee---cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 174 ---PSNEIVIWDALTA---EK-----VAKWS---SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 174 ---~d~~i~i~d~~~~---~~-----~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
..+.+++-++... .+ ...+. .....-..++..++....+..-..-|.+.+||+.
T Consensus 222 r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDle 289 (365)
T 2xzh_A 222 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE 289 (365)
T ss_dssp EETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred ecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcc
Confidence 1258888887432 11 11111 1223445677888877788888889999999974
No 327
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.15 E-value=0.028 Score=38.34 Aligned_cols=144 Identities=8% Similarity=-0.047 Sum_probs=80.3
Q ss_pred cceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce------eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEcc
Q 040370 66 GAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC------VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVS 139 (228)
Q Consensus 66 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~ 139 (228)
..+..++|+|+|.+.+. .+|.+.-.+..+... -..+-... -..-.++.|.|++.+.++ .||.|+-++-.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~G-w~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGG-WNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSC-GGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccc-cccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 36789999999886555 778877777654221 12221100 111367889999987777 56988877753
Q ss_pred CCeeEE-----EEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc------eeEEeecCCCCCcEEEEeCCC
Q 040370 140 SGRLVK-----QYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE------KVAKWSSNHIGAPRWIEHSPA 208 (228)
Q Consensus 140 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~~~ 208 (228)
+..... ...+...-.....+.+.|++...++. |+.++-....++. ....+....-..-.-+.|.|+
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~---dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~ 192 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH---GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV 192 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE---TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe---CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCC
Confidence 311110 11111112345778889999887776 3665433322111 111111122223444678898
Q ss_pred CcEEEEecCCC
Q 040370 209 EAAFITCGTDR 219 (228)
Q Consensus 209 ~~~l~s~~~dg 219 (228)
+.+.+.. +|
T Consensus 193 G~l~~v~--~g 201 (236)
T 1tl2_A 193 GTLFGVQ--GG 201 (236)
T ss_dssp SCEEEEE--TT
T ss_pred CcEEEEe--CC
Confidence 8877666 66
No 328
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.11 E-value=0.064 Score=41.90 Aligned_cols=187 Identities=13% Similarity=0.159 Sum_probs=113.7
Q ss_pred CCCEEEEec-CCCeEEEEEcccceEEeeeccceeeeccceeeEEeC--CCCCeEEEEec-------CCeE---------E
Q 040370 30 SGDFLLAGT-DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYS--STGGMYVTASK-------DGAI---------R 90 (228)
Q Consensus 30 ~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~-------dg~v---------~ 90 (228)
||++|..-. .+..|...+++..++.+....+. ...+..+.|- |+..+++.+++ ||.. .
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn---~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~ 217 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPN---VQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYT 217 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTT---CSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCC---CcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhce
Confidence 677777655 56788889999988877776654 5678888886 67778887764 2321 1
Q ss_pred E---EeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCC---------------eEEEEE---------------
Q 040370 91 L---WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS---------------TVKLWE--------------- 137 (228)
Q Consensus 91 i---wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---------------~i~~wd--------------- 137 (228)
+ .|..+.+....+.. ....-.+...+++++.++.+.+. .+.+++
T Consensus 218 ~f~~iD~~tm~v~~Qv~v---~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~ 294 (638)
T 3sbq_A 218 MYNAIDAETMEMAFQVIV---DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFIT 294 (638)
T ss_dssp EEEEEETTTCSEEEEEEE---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBC
T ss_pred EEEEEcCCccEEEEEEEc---CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEE
Confidence 1 12222222222211 11223344566777776665321 234444
Q ss_pred ----------ccC----CeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcce-------------eE
Q 040370 138 ----------VSS----GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK-------------VA 190 (228)
Q Consensus 138 ----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-------------~~ 190 (228)
.+. +.....+.. .+.....+..+|+|+++++++.-+.++.++|.+.... ..
T Consensus 295 ~~g~gv~ViD~~~~~~~~~~~~~~iP--~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~a 372 (638)
T 3sbq_A 295 LGDSKTPVLDGRKKDGKDSKFTRYVP--VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVG 372 (638)
T ss_dssp CTTCCCCEEECSCBTTBCCSSEEEEE--ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEE
T ss_pred ECCCCeeEEccccccccCCceEEEEe--CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEe
Confidence 332 111111110 2233446778999999999999999999999874221 11
Q ss_pred EeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 191 KWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 191 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
.. .-.-.....+|.++|....|---|..|.-|++
T Consensus 373 e~--e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni 406 (638)
T 3sbq_A 373 EP--ELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNM 406 (638)
T ss_dssp CC--BCCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred ec--cCCCcccEEEECCCCceEeeeeecceEEEEec
Confidence 21 23345678899999966666678999999986
No 329
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.05 E-value=0.054 Score=39.94 Aligned_cols=147 Identities=14% Similarity=0.229 Sum_probs=79.5
Q ss_pred cceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEec-----ccccceeEEEEECCC---CCEEEEee-C-------
Q 040370 66 GAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVG-----AHGTAEATSANFTKD---QRFVLSCG-K------- 129 (228)
Q Consensus 66 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----~~~~~~i~~~~~~~~---~~~l~~~~-~------- 129 (228)
.....|+|.|+|+.++.+...|.|++++.. +.....+.. .........++++|+ +..|+... .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 346789999999834455567999999853 332111110 111345689999996 44444442 2
Q ss_pred CCeEEEEEccCC--e--eEEEE-ecc----eeeeeeeEEEECCCCcEEEEeeCC------------CCeEEEEEcCCcc-
Q 040370 130 DSTVKLWEVSSG--R--LVKQY-LGA----THTQLRFQAVFNDTEEFVLSIDEP------------SNEIVIWDALTAE- 187 (228)
Q Consensus 130 d~~i~~wd~~~~--~--~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~------------d~~i~i~d~~~~~- 187 (228)
...|..+++... + ....+ ... ........+.|.|++.+.++.+.. .|.|.-++....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 235666766432 1 11111 111 011223568999999766665432 2467777754320
Q ss_pred -----------eeEEeecCCCCCcEEEEeCC-CCcEEEE
Q 040370 188 -----------KVAKWSSNHIGAPRWIEHSP-AEAAFIT 214 (228)
Q Consensus 188 -----------~~~~~~~~~~~~v~~~~~~~-~~~~l~s 214 (228)
....+..++ .....++|+| +++++++
T Consensus 177 ~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEE
T ss_pred CCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEE
Confidence 111221233 3467899999 5655544
No 330
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.97 E-value=0.078 Score=40.58 Aligned_cols=110 Identities=10% Similarity=0.101 Sum_probs=62.2
Q ss_pred cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeecccee----eeccceeeEEeCCC---CCeEEEEec-----
Q 040370 18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEI----SVNGAINQVRYSST---GGMYVTASK----- 85 (228)
Q Consensus 18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~---~~~l~~~~~----- 85 (228)
.-.....|+|.|+|+++++-...+.|++++..+++.......... .-...+..|+|+|+ +..|..+..
T Consensus 25 ~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 345678999999998777655445788887655543222111110 01356779999995 444544432
Q ss_pred --------CCeEEEEeCCCC-------ceee-EEecccccceeEEEEECCCCCEEEEee
Q 040370 86 --------DGAIRLWDGVSA-------NCVR-SIVGAHGTAEATSANFTKDQRFVLSCG 128 (228)
Q Consensus 86 --------dg~v~iwd~~~~-------~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~ 128 (228)
...|.-++.... +.+. .+... ..-....+.|.|||.+.++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~-~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSS-KDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCC-SSCCEEEEEECTTSCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCC-CCCCCCeEeECCCCeEEEEEC
Confidence 234555554322 1111 12211 112467899999998777654
No 331
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.94 E-value=0.061 Score=38.83 Aligned_cols=109 Identities=11% Similarity=0.129 Sum_probs=57.2
Q ss_pred CCCEEEEecCC-------CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec------CCeEEEEeCCC
Q 040370 30 SGDFLLAGTDH-------PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK------DGAIRLWDGVS 96 (228)
Q Consensus 30 ~~~~l~~~~~d-------~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~v~iwd~~~ 96 (228)
++..++.|+.+ ..+.+||..+.+-......+... ..-..+. .+++.++.|+. -..+.+||+.+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 184 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKV--YGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKK 184 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCE--ESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcc--cccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCC
Confidence 56666666643 35778888876644332222111 1111222 35666677664 24589999987
Q ss_pred CceeeEEecccccceeEEEEECCCCCEEEEeeCC-----CeEEEEEccCCeeE
Q 040370 97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-----STVKLWEVSSGRLV 144 (228)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~ 144 (228)
.+-...-..........++.+ +++.++.|+.+ ..+.+||+.+.+..
T Consensus 185 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 185 GDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp TEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred CEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 654332221111111122222 56677777643 35778998876543
No 332
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.94 E-value=0.08 Score=40.09 Aligned_cols=192 Identities=9% Similarity=0.121 Sum_probs=117.4
Q ss_pred EEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC-ceeeEE
Q 040370 25 VSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA-NCVRSI 103 (228)
Q Consensus 25 ~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~ 103 (228)
.-.+|..+.+|.=. ..++.|+|+++...+..... ...|.-=.|-.+. .|+-.+ +..|+.|++... .+.+.+
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-----~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvF 142 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-----TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMF 142 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-----SSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEE
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-----CCCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhhe
Confidence 44577777777554 57999999999887777665 3456666776443 344443 568999999754 344455
Q ss_pred eccc--ccceeEEEEECCCCCEEEEee-------CCCeEEEEEccCCeeEEEEecceeeeeeeEEEEC--CCCcEEEEee
Q 040370 104 VGAH--GTAEATSANFTKDQRFVLSCG-------KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFN--DTEEFVLSID 172 (228)
Q Consensus 104 ~~~~--~~~~i~~~~~~~~~~~l~~~~-------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 172 (228)
..+. ....|..-..+++.++++..+ -.|.+.+|..+. +..+.+++| ...-..+... +....+++-+
T Consensus 143 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGh--aa~F~~~~~~g~~~~~~lf~fa 219 (494)
T 1bpo_A 143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGH--AASFAQFKMEGNAEESTLFCFA 219 (494)
T ss_dssp ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCS--EEEEEEEECTTCSSEEEEEEEE
T ss_pred ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheee--eeeeEEEecCCCCCCceEEEEE
Confidence 4432 145677777888999877544 236788898865 445555553 2222222222 1222344333
Q ss_pred CC---CCeEEEEEcCCc---ce-----eEEee---cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 173 EP---SNEIVIWDALTA---EK-----VAKWS---SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 173 ~~---d~~i~i~d~~~~---~~-----~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
.. .+.+++.++... .+ ...+. .....-..++..++....+..-..-|.+.+||+.
T Consensus 220 ~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDle 288 (494)
T 1bpo_A 220 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE 288 (494)
T ss_dssp ECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred EecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecc
Confidence 22 278888888433 11 11111 1223445678888877788888889999999964
No 333
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.92 E-value=0.066 Score=38.92 Aligned_cols=203 Identities=12% Similarity=0.045 Sum_probs=106.6
Q ss_pred eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccc-eEEeeeccceeeeccceeeEEeCCCCCeEEEEe------
Q 040370 12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTF-QCYLSANVPEISVNGAINQVRYSSTGGMYVTAS------ 84 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------ 84 (228)
.++...-.++|.-=.|-. .+.|+-.+. ..|+-|+++.. .+.+.+..+..-....|..-..+++.+.++..+
T Consensus 99 klks~~~~e~VvfWkWis-~~~L~lVT~-taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~ 176 (365)
T 2xzh_A 99 KMKAHTMTDDVTFWKWIS-LNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQN 176 (365)
T ss_dssp EEEEEECSSCEEEEEECS-SSEEEEEES-SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETT
T ss_pred hhcceecCCccEEEEecC-CCeEEEEcC-CcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCC
Confidence 333334456666666653 344554443 47999998753 233333221111144566677788888666443
Q ss_pred -cCCeEEEEeCCCCceeeEEecccccceeEEEEECC--C-CCEEEEeeC---CCeEEEEEccCC---eeE-----EEE--
Q 040370 85 -KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK--D-QRFVLSCGK---DSTVKLWEVSSG---RLV-----KQY-- 147 (228)
Q Consensus 85 -~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~~~l~~~~~---d~~i~~wd~~~~---~~~-----~~~-- 147 (228)
-.|.+.+|..+. +..+.+.+| ...-..+.+.. . .+.++.+.. .+.+++.++... ... ..+
T Consensus 177 ~v~G~mQLYS~er-~~sQ~ieGh--aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~f 253 (365)
T 2xzh_A 177 RVVGAMQLYSVDR-KVSQPIEGH--AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFF 253 (365)
T ss_dssp EEEEEEEEEETTT-TEEEEECCS--EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECC
T ss_pred ccceeEEEEeecc-cccceeeee--eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeC
Confidence 237889998764 344555554 22222222211 1 123333322 258899988543 111 111
Q ss_pred ecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCE
Q 040370 148 LGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSV 221 (228)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 221 (228)
..........++..++....++.... -|.+++||+.++.++..- .-....|..-+-+.+..-++.....|.|
T Consensus 254 ppea~~DFPVamqvs~kygviyviTK-~G~ihlyDleTgt~i~~n-rIS~d~iF~ta~~~~~~Gi~~Vnr~GqV 325 (365)
T 2xzh_A 254 PPEAQNDFPVAMQISEKHDVVFLITK-YGYIHLYDLETGTCIYMN-RISGETIFVTAPHEATAGIIGVNRKGQV 325 (365)
T ss_dssp CTTCTTCCEEEEEEETTTTEEEEEET-TSEEEEEETTTCCEEEEE-ECCSSCEEEEEEEGGGTEEEEEETTCEE
T ss_pred CccccCCceEEEEecccCCEEEEEeC-CcEEEEEEcccCcEEEEe-ccCCCceEEecccCCCCcEEEEcCCCEE
Confidence 11112344556666666666666555 499999999999998876 3334444444433333334444455544
No 334
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.88 E-value=0.13 Score=41.69 Aligned_cols=156 Identities=10% Similarity=0.054 Sum_probs=82.4
Q ss_pred CCCCEEEEecCC----CeEEEEEcccceEEeee-c-----cceeeeccceeeEEeCCCCCeEEEEecC------CeEEEE
Q 040370 29 PSGDFLLAGTDH----PIAHLYDVNTFQCYLSA-N-----VPEISVNGAINQVRYSSTGGMYVTASKD------GAIRLW 92 (228)
Q Consensus 29 ~~~~~l~~~~~d----~~i~vw~~~~~~~~~~~-~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~iw 92 (228)
.++..++.|+.+ ..+.+||..+++-.... . .+.. ...-..+.+..+++.++.|+.+ ..+.+|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~--R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVA--RMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCC--CBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCcc--ccceEEEEEccCCEEEEEcCCCCCCCccccEEEE
Confidence 456677777643 46888998877543322 1 1110 1112223332267777777754 358889
Q ss_pred eCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCC--eEEEEEccCCeeEEEEe---cceeeeeeeEEEECCC-Cc
Q 040370 93 DGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS--TVKLWEVSSGRLVKQYL---GATHTQLRFQAVFNDT-EE 166 (228)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~ 166 (228)
|+.+.+-...-.... ...-.+++...+++.++.|+.++ .+.+||+.+.+....-. ..........+.+... +.
T Consensus 474 d~~t~~W~~~~~~p~-~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~ 552 (695)
T 2zwa_A 474 DMKTREWSMIKSLSH-TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQ 552 (695)
T ss_dssp ETTTTEEEECCCCSB-CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTE
T ss_pred eCCCCcEEECCCCCC-CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCE
Confidence 988764332211111 11122333334778888887655 69999998876543221 1111112223444544 44
Q ss_pred EEEEeeCC-C-----CeEEEEEcCCcc
Q 040370 167 FVLSIDEP-S-----NEIVIWDALTAE 187 (228)
Q Consensus 167 ~~~~~~~~-d-----~~i~i~d~~~~~ 187 (228)
.++.+|.. + ..+.+||+.+..
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred EEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 44444431 1 468899988776
No 335
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.83 E-value=0.087 Score=38.83 Aligned_cols=120 Identities=10% Similarity=0.044 Sum_probs=64.9
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeec-cc--eeeeccceeeEEeCCC---CCeEEEEe-c------
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSAN-VP--EISVNGAINQVRYSST---GGMYVTAS-K------ 85 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~--~~~~~~~i~~~~~~~~---~~~l~~~~-~------ 85 (228)
-.....|+|.|+++.|+++...|.|++++.. +.....+. .. ..........++++|+ +..|..+. .
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 4567899999999834455567999998853 33211111 10 0010345688999995 44444442 2
Q ss_pred -CCeEEEEeCCCC--c--eeeEE-eccc----ccceeEEEEECCCCCEEEEeeC-------------CCeEEEEEcc
Q 040370 86 -DGAIRLWDGVSA--N--CVRSI-VGAH----GTAEATSANFTKDQRFVLSCGK-------------DSTVKLWEVS 139 (228)
Q Consensus 86 -dg~v~iwd~~~~--~--~~~~~-~~~~----~~~~i~~~~~~~~~~~l~~~~~-------------d~~i~~wd~~ 139 (228)
...|..+++... . ....+ .... .......+.|.|++.+.++.+. .|.|.-+|..
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d 172 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ 172 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence 235666665432 1 11111 1100 0112356999999976665433 2456666764
No 336
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.0037 Score=45.70 Aligned_cols=115 Identities=10% Similarity=0.024 Sum_probs=72.2
Q ss_pred CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEe--CCCCCeEEEE--ecCCeEEEEeCCCCceeeEEeccc
Q 040370 32 DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRY--SSTGGMYVTA--SKDGAIRLWDGVSANCVRSIVGAH 107 (228)
Q Consensus 32 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~ 107 (228)
..++.++.||.|.-.|.++|+......... ..++....- .+.+..++.+ ..||.|..++..+|.....+....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~---~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~ 87 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPEN---FQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ 87 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGG---SCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCc---cCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence 468889999999999999999888776530 112211110 0112234433 589999999998886554443321
Q ss_pred --ccceeEE---EEE-C----CCCCEEEEeeCCCeEEEEEccCCeeEEEEec
Q 040370 108 --GTAEATS---ANF-T----KDQRFVLSCGKDSTVKLWEVSSGRLVKQYLG 149 (228)
Q Consensus 108 --~~~~i~~---~~~-~----~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 149 (228)
...++.. ... . ..+..+++|+.++.+...|+++|+.+..+..
T Consensus 88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 0111111 000 0 1456789999999999999999998887753
No 337
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.74 E-value=0.099 Score=38.34 Aligned_cols=104 Identities=13% Similarity=0.045 Sum_probs=55.5
Q ss_pred CCCEEEEecC-C---------CeEEEEEcccceEEeeeccc-eeeeccceeeEEeCCCCCeEEEEecC------------
Q 040370 30 SGDFLLAGTD-H---------PIAHLYDVNTFQCYLSANVP-EISVNGAINQVRYSSTGGMYVTASKD------------ 86 (228)
Q Consensus 30 ~~~~l~~~~~-d---------~~i~vw~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d------------ 86 (228)
+++.++.|+. + ..+.+||..+.+-....... .. .....++. .++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~--r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~ 140 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMG--MAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLN 140 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSC--CSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcc--cccceEEE--ECCEEEEEeCcCCCcCcccccchh
Confidence 5666677765 2 46889998887643332222 11 11122222 467777888754
Q ss_pred ---------------------------CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC------CCeE
Q 040370 87 ---------------------------GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK------DSTV 133 (228)
Q Consensus 87 ---------------------------g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i 133 (228)
..+.+||+.+.+-...-........-.+++.. +++.++.|+. ...+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v 219 (357)
T 2uvk_A 141 EAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAV 219 (357)
T ss_dssp HHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCE
T ss_pred hcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCce
Confidence 57899999876544332221101110222222 4666666653 2457
Q ss_pred EEEEc
Q 040370 134 KLWEV 138 (228)
Q Consensus 134 ~~wd~ 138 (228)
..||+
T Consensus 220 ~~~d~ 224 (357)
T 2uvk_A 220 FELDF 224 (357)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 77887
No 338
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.58 E-value=0.045 Score=40.22 Aligned_cols=148 Identities=9% Similarity=-0.000 Sum_probs=64.1
Q ss_pred CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec------CCeEEEEeC--CCCceeeEEeccccccee
Q 040370 41 PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK------DGAIRLWDG--VSANCVRSIVGAHGTAEA 112 (228)
Q Consensus 41 ~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~v~iwd~--~~~~~~~~~~~~~~~~~i 112 (228)
..+.+||..+.+-......+... ... .+++.. ++++++.|+. ...+..+|+ .+.+-...-.........
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~-~~~-~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~ 244 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYG-TAG-AAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVA 244 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCC-CBS-CEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCB
T ss_pred ccEEEEeCCCCcEEECCCCCCCC-ccc-ccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccc
Confidence 57889999887643332222111 111 222222 5566666653 345777876 433322111111001111
Q ss_pred EEEEECCCCCEEEEeeCC----------------------CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370 113 TSANFTKDQRFVLSCGKD----------------------STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS 170 (228)
Q Consensus 113 ~~~~~~~~~~~l~~~~~d----------------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
...+...+++.++.|+.+ ..+.+||+.+.+....-........ ..+ ...++..++.
T Consensus 245 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~-~~~~~~i~v~ 322 (357)
T 2uvk_A 245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY-GVS-LPWNNSLLII 322 (357)
T ss_dssp SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS-SEE-EEETTEEEEE
T ss_pred cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc-cee-EEeCCEEEEE
Confidence 111112256677777632 2578899887654332211111111 111 2234555555
Q ss_pred eeCCC-----CeEEEEEcCCcceeEEee
Q 040370 171 IDEPS-----NEIVIWDALTAEKVAKWS 193 (228)
Q Consensus 171 ~~~~d-----~~i~i~d~~~~~~~~~~~ 193 (228)
+|... ..+.++++++++.....+
T Consensus 323 GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 323 GGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp EEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 55421 246666888777665543
No 339
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.47 E-value=0.14 Score=36.80 Aligned_cols=161 Identities=4% Similarity=-0.027 Sum_probs=85.6
Q ss_pred CCCCEEEEec--CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC--------------CeEEEE
Q 040370 29 PSGDFLLAGT--DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD--------------GAIRLW 92 (228)
Q Consensus 29 ~~~~~l~~~~--~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------g~v~iw 92 (228)
+++..++... .++.|...+.+.....+ +. ... +--++++++.|+-+... ..|+..
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~~-l~------~~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i 93 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNIHK-LS------NDT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRI 93 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSCEE-EE------EEE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEE
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCCEE-cc------CCc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEE
Confidence 4566665442 34555555544333211 11 111 23457788887766543 367777
Q ss_pred eCCCCceeeEEecccccceeEEEEECCCCCEEEEee----CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEE
Q 040370 93 DGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCG----KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFV 168 (228)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (228)
++..++... +... . +..+++++++|+-.. ....|+..++.. .....+... .. ..+++.++.+
T Consensus 94 ~~dg~~~~~-l~~~----~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~--~~----~~~~~~g~~i 159 (302)
T 3s25_A 94 KRNGHGSTV-LDPD----P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNH--YL----FTCNTSDRYF 159 (302)
T ss_dssp ETTSCCCEE-EECS----C--EEEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESS--CC----CCSEEETTEE
T ss_pred eCCCCcceE-eecC----C--ccEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCC--Cc----eEeeEECCEE
Confidence 776655332 3221 1 225677788887665 344566666653 333444332 11 2346678888
Q ss_pred EEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecC
Q 040370 169 LSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGT 217 (228)
Q Consensus 169 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 217 (228)
+-+......|...++..+.....+ .+ ... ..++|++.+|+-...
T Consensus 160 y~t~~g~~~Iy~~~l~g~~~~~l~-~~---~~~-~~~~P~g~~iy~t~~ 203 (302)
T 3s25_A 160 YYNNPKNGQLYRYDTASQSEALFY-DC---NCY-KPVVLDDTNVYYMDV 203 (302)
T ss_dssp EEECTTTCCEEEEETTTTEEEEEE-CS---CEE-EEEEEETTEEEEEEG
T ss_pred EEEeCCCceEEEEECCCCCEEEEe-CC---Ccc-ceeeecCCEEEEEEc
Confidence 776654678888887665543322 22 222 235577776665443
No 340
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.44 E-value=0.15 Score=36.70 Aligned_cols=141 Identities=9% Similarity=0.003 Sum_probs=80.0
Q ss_pred EEEeCCCCEEEEecCC--------------CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe--c--C
Q 040370 25 VSFHPSGDFLLAGTDH--------------PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS--K--D 86 (228)
Q Consensus 25 ~~~~~~~~~l~~~~~d--------------~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~--d 86 (228)
--+++++++|+-.... ..|+..+++..+..... ... ...|+++++.|+-.. . +
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~-------~~~--~~~~s~~g~~Iy~~~~~~~~~ 128 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD-------PDP--CIYASLIGNYIYYLHYDTQTA 128 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE-------CSC--EEEEEEETTEEEEEEESSSSC
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee-------cCC--ccEEEEeCCEEEEEeecCCCC
Confidence 3457888888765432 35677777665432221 111 236777888887665 3 3
Q ss_pred CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCC
Q 040370 87 GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE 165 (228)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (228)
..|..-++.. .....+..+ .. ..++++++.|+-.+. ...|.+.++..+.....+.+ .. .. .+.|++
T Consensus 129 ~~Iy~~~~dG-s~~~~lt~~--~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~--~~-~~~P~g 195 (302)
T 3s25_A 129 TSLYRIRIDG-EEKKKIKNH--YL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NC--YK-PVVLDD 195 (302)
T ss_dssp EEEEEEETTS-CCCEEEESS--CC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CE--EE-EEEEET
T ss_pred ceEEEEECCC-CCeEEEeCC--Cc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Cc--cc-eeeecC
Confidence 4555556653 334444433 11 346777877775554 67888888876654433332 11 11 244888
Q ss_pred cEEEEeeCCC-CeEEEEEcCCcc
Q 040370 166 EFVLSIDEPS-NEIVIWDALTAE 187 (228)
Q Consensus 166 ~~~~~~~~~d-~~i~i~d~~~~~ 187 (228)
.+++-+...+ ..|..-++....
T Consensus 196 ~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 196 TNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp TEEEEEEGGGTTEEEEECSSSCC
T ss_pred CEEEEEEcCCCcEEEEEECCCCC
Confidence 8887765432 356666665444
No 341
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.07 Score=39.05 Aligned_cols=115 Identities=10% Similarity=0.045 Sum_probs=70.6
Q ss_pred CeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEEC--C-CCCEEEEe-eCCCeEEEEEccCCeeEEEEecceee
Q 040370 78 GMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFT--K-DQRFVLSC-GKDSTVKLWEVSSGRLVKQYLGATHT 153 (228)
Q Consensus 78 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~~~ 153 (228)
..++.++.||.|.-.|..+|+..-.+.... ..++....-. + ++..++.. ..||.+..+|..+|.....+......
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~-~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPEN-FQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGG-SCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCc-cCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 468899999999999999999888876631 1222221100 1 22333333 68999999999888655444321110
Q ss_pred eeeeEEEEC-----------CCCcEEEEeeCCCCeEEEEEcCCcceeEEeecC
Q 040370 154 QLRFQAVFN-----------DTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN 195 (228)
Q Consensus 154 ~~~~~~~~~-----------~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 195 (228)
. ...+... ..+..+++++. ++.+...|+++|+.+..+..+
T Consensus 90 ~-~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~-~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 90 S-TSPLHLKTNIVVNDSGKIVEDEKVYTGSM-RTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp T-TCSEEEECC----------CCEEEEECEE-EEEEEEEETTTCCEEEEESTT
T ss_pred e-ccccccCCCceeecccccccCCEEEEEec-CCEEEEEECCCCcEEEEEecC
Confidence 0 0001110 13445555444 799999999999999888433
No 342
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.91 E-value=0.54 Score=41.32 Aligned_cols=193 Identities=10% Similarity=0.122 Sum_probs=107.6
Q ss_pred EEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC-ceeeEEe
Q 040370 26 SFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA-NCVRSIV 104 (228)
Q Consensus 26 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~ 104 (228)
-.+|..+.+|.=. ..++.|+|+++...+..... ..+|.-=.|-.... |+-.+ +..|..|++... .+.+.+.
T Consensus 72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-----~e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fd 143 (1630)
T 1xi4_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-----TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFD 143 (1630)
T ss_pred ccCCCcceEEEec-CCeEEEeehHHhhhhccccc-----CCCceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHh
Confidence 3467666666544 57899999998776666554 34566667764443 33332 467999999743 2333332
Q ss_pred ccc--ccceeEEEEECCCCCEEEEee-------CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC--
Q 040370 105 GAH--GTAEATSANFTKDQRFVLSCG-------KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE-- 173 (228)
Q Consensus 105 ~~~--~~~~i~~~~~~~~~~~l~~~~-------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 173 (228)
.+. ....|..-..+++.++++..| -.|.+.+|..+.+ ..+.+.+|...-....+.-.+....+++.+.
T Consensus 144 R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~ 222 (1630)
T 1xi4_A 144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRG 222 (1630)
T ss_pred cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEec
Confidence 221 134566677788888877444 3477888887643 3333444221111111111122222333222
Q ss_pred -CCCeEEEEEcCCc---ceeEE-----ee---cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370 174 -PSNEIVIWDALTA---EKVAK-----WS---SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI 227 (228)
Q Consensus 174 -~d~~i~i~d~~~~---~~~~~-----~~---~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 227 (228)
..+.++|-++... .+... +. .....-..++..++....+..-+.-|.+.++|+.
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~ 288 (1630)
T 1xi4_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE 288 (1630)
T ss_pred CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecc
Confidence 1267888887432 11110 00 1123335567778877777788888999999864
No 343
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.76 E-value=0.38 Score=35.34 Aligned_cols=110 Identities=17% Similarity=0.149 Sum_probs=64.6
Q ss_pred ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeecc---ceeeeccceeeEEeCCC---CCeEEEE---ecCC
Q 040370 17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANV---PEISVNGAINQVRYSST---GGMYVTA---SKDG 87 (228)
Q Consensus 17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~---~~~l~~~---~~dg 87 (228)
..-.....|+|.|+|.++++--..|.|++++...++....... .... ......|+++|+ +..|... ..++
T Consensus 29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g-~~GllGia~~Pdf~~~g~lYv~yt~~~~~ 107 (347)
T 3das_A 29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSG-EGGLLGIALSPDYASDHMVYAYFTSASDN 107 (347)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBT-TBSEEEEEECTTHHHHCEEEEEEECSSSE
T ss_pred cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecC-CCCceeeEeccccccCCEEEEEEecCCCC
Confidence 4456788999999998777766589999988665543221111 1111 456789999995 3444433 2345
Q ss_pred eEEEEeCCCC----------cee-eEEecccccceeEEEEECCCCCEEEEee
Q 040370 88 AIRLWDGVSA----------NCV-RSIVGAHGTAEATSANFTKDQRFVLSCG 128 (228)
Q Consensus 88 ~v~iwd~~~~----------~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 128 (228)
.|.-|....+ +.+ ..+... ..-....+.|.||+.+.++.+
T Consensus 108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~-~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKG-VIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEEEEEBCTTSCTTCCBCCCEEEEEEECCC-SSCCCCCEEECTTSCEEEECB
T ss_pred EEEEEEeCCCCcccccCCCcEEEEEcCCCC-CCccCccccCCCCCCEEEEEC
Confidence 5666655431 111 112111 011235699999998777654
No 344
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.62 E-value=0.52 Score=35.87 Aligned_cols=203 Identities=11% Similarity=0.039 Sum_probs=108.5
Q ss_pred eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccc-eEEeeeccceeeeccceeeEEeCCCCCeEEEEe------
Q 040370 12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTF-QCYLSANVPEISVNGAINQVRYSSTGGMYVTAS------ 84 (228)
Q Consensus 12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------ 84 (228)
.++.....++|.-=.|-. .+.|+-.+ +..|+-|+++.. .+.+.+..+..-....|..-..+++.++++..+
T Consensus 98 klks~~~~e~VvfWkWis-~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~ 175 (494)
T 1bpo_A 98 KMKAHTMTDDVTFWKWIS-LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQN 175 (494)
T ss_dssp EEEEEECSSCCCEEEEEE-TTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETT
T ss_pred hhcceecCCCceEEEecC-CCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCC
Confidence 333333445666556643 33455444 357999999752 233332221111144566777788888766443
Q ss_pred -cCCeEEEEeCCCCceeeEEecccccceeEEEEECCC---CCEEEEeeC---CCeEEEEEccCC---ee-----EEEE--
Q 040370 85 -KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD---QRFVLSCGK---DSTVKLWEVSSG---RL-----VKQY-- 147 (228)
Q Consensus 85 -~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~---d~~i~~wd~~~~---~~-----~~~~-- 147 (228)
-.|.+.+|..+.+ ..+.+.+| ...-..+.+..+ .+.++.+.. .+.+++.++... .. ...+
T Consensus 176 ~v~G~mQLYS~er~-~sQ~ieGh--aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~f 252 (494)
T 1bpo_A 176 RVVGAMQLYSVDRK-VSQPIEGH--AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFF 252 (494)
T ss_dssp EEEEEEEEEESTTC-CEEEECCS--EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCC
T ss_pred cccceEEEeecccc-ccchheee--eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeC
Confidence 2478899997643 34455554 222222222211 123333333 378999998543 11 1111
Q ss_pred ecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCE
Q 040370 148 LGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSV 221 (228)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 221 (228)
...........+..++....++.... -|.+++||+.++..+..- .-....|..-+-+....-++.....|.|
T Consensus 253 ppe~~~DFPvamqvs~kygviyviTK-~G~i~lyDleTgt~i~~n-rIs~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 253 PPEAQNDFPVAMQISEKHDVVFLITK-YGYIHLYDLETGTCIYMN-RISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp CTTSTTCCEEEEEEETTTTEEEEEET-TSEEEEEETTTCCEEEEE-ECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred CcccccCceeEEEecccCCEEEEEec-CceEEEEecccceeeeee-cccCCceEEecccCCCCcEEEEccCceE
Confidence 11112344556677777777766666 499999999999998876 3334445444444433334444455554
No 345
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.31 E-value=0.8 Score=36.05 Aligned_cols=189 Identities=11% Similarity=0.135 Sum_probs=107.5
Q ss_pred EEEecCCCeEEEEEcccceEEeeeccceee---------------------eccceee--EEeCC---CCCeEEEEe-cC
Q 040370 34 LLAGTDHPIAHLYDVNTFQCYLSANVPEIS---------------------VNGAINQ--VRYSS---TGGMYVTAS-KD 86 (228)
Q Consensus 34 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~---------------------~~~~i~~--~~~~~---~~~~l~~~~-~d 86 (228)
|.+|+..|.|+|+-+.+++.+..+...... ..+.... +.+.. ||++++.-. .+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 668999999999999999877765433210 0111111 22221 456777665 45
Q ss_pred CeEEEEeCCCCceeeEEecccccceeEEEEEC--CCCCEEEEeeC-------CCeE------------EEEEccCCeeEE
Q 040370 87 GAIRLWDGVSANCVRSIVGAHGTAEATSANFT--KDQRFVLSCGK-------DSTV------------KLWEVSSGRLVK 145 (228)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~-------d~~i------------~~wd~~~~~~~~ 145 (228)
..|-.-+++..+.-+.+.... ...+..+.|- |+..|++.+++ ||.. ...|..+.+...
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn-~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPN-VQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF 231 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTT-CSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred cceEEEECCcEeeceeEeCCC-CcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence 667778888887776666544 5677888886 67788888774 2221 011222222221
Q ss_pred EEecceeeeeeeEEEECCCCcEEEEeeCC--------------------------------------CC-eEEEEEcCC-
Q 040370 146 QYLGATHTQLRFQAVFNDTEEFVLSIDEP--------------------------------------SN-EIVIWDALT- 185 (228)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------d~-~i~i~d~~~- 185 (228)
++.. ......+...+++.+.++++.+ ++ .+.+.|.+.
T Consensus 232 Qv~v---~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~ 308 (638)
T 3sbq_A 232 QVIV---DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKK 308 (638)
T ss_dssp EEEE---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCB
T ss_pred EEEc---CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccc
Confidence 1111 1111223445667777776543 11 344555444
Q ss_pred ---cceeEEeecCCCCCcEEEEeCCCCcEEEEec-CCCCEEEeeec
Q 040370 186 ---AEKVAKWSSNHIGAPRWIEHSPAEAAFITCG-TDRSVRFWKEI 227 (228)
Q Consensus 186 ---~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~ 227 (228)
+.....+ ..-......+..+|||++++.++ .+.++.++|..
T Consensus 309 ~~~~~~~~~~-iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~ 353 (638)
T 3sbq_A 309 DGKDSKFTRY-VPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAID 353 (638)
T ss_dssp TTBCCSSEEE-EEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred cccCCceEEE-EeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEee
Confidence 2222111 12233456688999999988776 57889888853
No 346
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=95.21 E-value=0.77 Score=35.26 Aligned_cols=111 Identities=11% Similarity=0.083 Sum_probs=60.3
Q ss_pred CcceEEEEEeCCCC-EEEEecCCCeEEEEEcccce---EEeeecccee-----eeccceeeEEeCCC----CCeEEEEec
Q 040370 19 THNVRSVSFHPSGD-FLLAGTDHPIAHLYDVNTFQ---CYLSANVPEI-----SVNGAINQVRYSST----GGMYVTASK 85 (228)
Q Consensus 19 ~~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~~~~~---~~~~~~~~~~-----~~~~~i~~~~~~~~----~~~l~~~~~ 85 (228)
-.....|+|.|++. .|+++...|.|++++..... .+..+..... ........|+|+|+ +.+.++-+.
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 35668999999996 56666778999999754321 1111111000 00346788999996 443333332
Q ss_pred --C----------CeEEEEeCCC----------CceeeEEecccccceeEEEEECCCCCEEEEeeC
Q 040370 86 --D----------GAIRLWDGVS----------ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK 129 (228)
Q Consensus 86 --d----------g~v~iwd~~~----------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 129 (228)
+ ..|.-|.+.. .+.+..+......-....|.|.||+.+.++.+.
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 1344455432 122233321111123578999999987776554
No 347
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.86 E-value=1.3 Score=36.19 Aligned_cols=192 Identities=12% Similarity=0.010 Sum_probs=97.8
Q ss_pred cceEEEEEeCCCCEEEEecCCCeEEEEEcccc-----eEEe---eeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370 20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTF-----QCYL---SANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL 91 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~-----~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 91 (228)
..|.++.-.+++. |..|+..+-+.+++.++. .... .......-....|.++...++|++.+.++..+-+..
T Consensus 419 ~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~ 497 (758)
T 3ott_A 419 NWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDK 497 (758)
T ss_dssp SSEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEE
T ss_pred ceEEEEEEcCCCC-EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEE
Confidence 3577777766654 555665555778886531 1111 111110001345888988888886653444455888
Q ss_pred EeCCCCceeeEEec-ccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe-cceeeeeeeEEEECCCCcEEE
Q 040370 92 WDGVSANCVRSIVG-AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL-GATHTQLRFQAVFNDTEEFVL 169 (228)
Q Consensus 92 wd~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 169 (228)
+|..+++....... ......+.++....+|...+ |+.+ -+..+|..+.+... +. ..-....+..+.. .++...+
T Consensus 498 ~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~-~~~~gl~~~~i~~i~~-~~g~lWi 573 (758)
T 3ott_A 498 INPRTREVTKLFADELTGEKSPNYLLCDEDGLLWV-GFHG-GVMRINPKDESQQS-ISFGSFSNNEILSMTC-VKNSIWV 573 (758)
T ss_dssp EETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEE-EETT-EEEEECC--CCCCB-CCCCC---CCEEEEEE-ETTEEEE
T ss_pred EeCCCCceEEecCCCcCCCcccceEEECCCCCEEE-EecC-ceEEEecCCCceEE-ecccCCCccceEEEEE-CCCCEEE
Confidence 89876654332111 11134677888777777554 4444 48888876554321 11 0111233445544 3555444
Q ss_pred EeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeC-CCCcEEEEecCCCCEE
Q 040370 170 SIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHS-PAEAAFITCGTDRSVR 222 (228)
Q Consensus 170 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~dg~i~ 222 (228)
++ . ..+..+|..+.+...-- .....+....+. ++|. |..|+.+|.+.
T Consensus 574 ~t-~--~Gl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~G~-l~fG~~~Gl~~ 621 (758)
T 3ott_A 574 ST-T--NGLWIIDRKTMDARQQN--MTNKRFTSLLFDPKEDC-VYLGGADGFGI 621 (758)
T ss_dssp EE-S--SCEEEEETTTCCEEEC----CCCCCSEEEEETTTTE-EEEECBSEEEE
T ss_pred EC-C--CCeEEEcCCCceeEEec--CCCCceeeeEEECCCCc-EEEecCCceEE
Confidence 43 3 45788888766543211 111223334443 4554 55566677443
No 348
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.73 E-value=1.5 Score=38.77 Aligned_cols=168 Identities=11% Similarity=0.053 Sum_probs=84.9
Q ss_pred CcceEEEEEeCCCCEEEEecCCCeEEEEEcccc-eEEeeeccceeeeccceeeEEeCCCCCeEEEEe-------cCCeEE
Q 040370 19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTF-QCYLSANVPEISVNGAINQVRYSSTGGMYVTAS-------KDGAIR 90 (228)
Q Consensus 19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------~dg~v~ 90 (228)
+.+|.-=.|-. .+.|+-.+ +..|.-|++... .+.+.+..+..-....|..-.-+++.++++..+ -.|.+.
T Consensus 105 ~e~VvfWkWis-~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQ 182 (1630)
T 1xi4_A 105 TDDVTFWKWIS-LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQ 182 (1630)
T ss_pred CCCceEEEecC-CCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceee
Confidence 34555555543 33444444 347899999642 222222211100134566666778888666433 348899
Q ss_pred EEeCCCCceeeEEecccccceeEEEEEC--C-CCCEEEEee---CCCeEEEEEccCC---eeEEE-------Eecceeee
Q 040370 91 LWDGVSANCVRSIVGAHGTAEATSANFT--K-DQRFVLSCG---KDSTVKLWEVSSG---RLVKQ-------YLGATHTQ 154 (228)
Q Consensus 91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~~~l~~~~---~d~~i~~wd~~~~---~~~~~-------~~~~~~~~ 154 (228)
+|..+.+. .+.+.+|. .....+... + ....++.+. ..+.+++-++... ..... +.......
T Consensus 183 LyS~er~~-sQ~iegha--~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~D 259 (1630)
T 1xi4_A 183 LYSVDRKV-SQPIEGHA--ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND 259 (1630)
T ss_pred eeeccccc-chhhhHhH--hhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccC
Confidence 99876442 23333331 111111111 1 111222221 1368888888543 11110 11111233
Q ss_pred eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe
Q 040370 155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW 192 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 192 (228)
....+..++....++.... -|.+.+||+.++..+..-
T Consensus 260 fpv~~~vs~k~g~iy~itk-~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 260 FPVAMQISEKHDVVFLITK-YGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred cceEEEeccccCEEEEEec-CceEEEEecccchhhhhc
Confidence 4455666666666666555 499999999999876654
No 349
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=93.45 E-value=2 Score=32.97 Aligned_cols=107 Identities=14% Similarity=0.109 Sum_probs=60.4
Q ss_pred ceeeEEeCCCCC-eEEEEecCCeEEEEeCCCCc---eeeEEecc-------cccceeEEEEECCC----CCEEEEeeC--
Q 040370 67 AINQVRYSSTGG-MYVTASKDGAIRLWDGVSAN---CVRSIVGA-------HGTAEATSANFTKD----QRFVLSCGK-- 129 (228)
Q Consensus 67 ~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~---~~~~~~~~-------~~~~~i~~~~~~~~----~~~l~~~~~-- 129 (228)
....|+|.|++. .++.+...|.|++++..... .+..+... ........++|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 457899999986 46666788999999754221 22222110 01345788999996 333333221
Q ss_pred C----------CeEEEEEccC----------CeeEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370 130 D----------STVKLWEVSS----------GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE 173 (228)
Q Consensus 130 d----------~~i~~wd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
+ ..|.-|.+.. .+.+..+...........+.|.|++.+.++.|.
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 1344455532 122333321112234568899999987777765
No 350
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=93.44 E-value=1.8 Score=32.29 Aligned_cols=196 Identities=8% Similarity=0.075 Sum_probs=107.4
Q ss_pred cceEEEEEeCCCCEEE--Eec-------------CCCeEEEEEcccc--eEEeeecccee--eeccceeeEEeC---CC-
Q 040370 20 HNVRSVSFHPSGDFLL--AGT-------------DHPIAHLYDVNTF--QCYLSANVPEI--SVNGAINQVRYS---ST- 76 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~--~~~-------------~d~~i~vw~~~~~--~~~~~~~~~~~--~~~~~i~~~~~~---~~- 76 (228)
-.|..+...+.+.+=+ +|- .-..|.+||+.++ +.++.+..+.. ...+.+..+.+. |.
T Consensus 87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~ 166 (381)
T 3q6k_A 87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG 166 (381)
T ss_dssp SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence 3566677766554333 221 1236889999999 88777665421 114567778776 22
Q ss_pred ---CCeEEEE-ecCCeEEEEeCCCCceeeEEeccc-----------c-----cceeEEEEECCC----CCEEEEeeCCC-
Q 040370 77 ---GGMYVTA-SKDGAIRLWDGVSANCVRSIVGAH-----------G-----TAEATSANFTKD----QRFVLSCGKDS- 131 (228)
Q Consensus 77 ---~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~-----------~-----~~~i~~~~~~~~----~~~l~~~~~d~- 131 (228)
+.++..+ +..+.|.|+|+.+++..+...... + ...+..++++|+ ++.|+-....+
T Consensus 167 ~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~ 246 (381)
T 3q6k_A 167 DCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI 246 (381)
T ss_dssp TSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS
T ss_pred CCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC
Confidence 2333333 346789999999887665542100 0 236788888887 66666555443
Q ss_pred eEEEEE---ccCCee---EEEEeccee-eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC-c---ceeEEee-cCCCCC
Q 040370 132 TVKLWE---VSSGRL---VKQYLGATH-TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT-A---EKVAKWS-SNHIGA 199 (228)
Q Consensus 132 ~i~~wd---~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~---~~~~~~~-~~~~~~ 199 (228)
.++-.. +++... +..+ +... ..........+....++.+.-+...|..|+..+ . +....+. ...-..
T Consensus 247 ~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~ 325 (381)
T 3q6k_A 247 KVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVF 325 (381)
T ss_dssp EEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCS
T ss_pred cEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccc
Confidence 233333 122211 1111 1111 112234456544445555556679999999875 1 1222221 223345
Q ss_pred cEEEEeCCCCcEEEEec
Q 040370 200 PRWIEHSPAEAAFITCG 216 (228)
Q Consensus 200 v~~~~~~~~~~~l~s~~ 216 (228)
+..+.+.+++.+.+++.
T Consensus 326 pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 326 GTDISVDSKGGLWFMSN 342 (381)
T ss_dssp EEEEEECTTSCEEEEEC
T ss_pred cCeEEECCCCeEEEEEC
Confidence 77888888877666554
No 351
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.30 E-value=2.2 Score=30.29 Aligned_cols=162 Identities=8% Similarity=0.014 Sum_probs=73.7
Q ss_pred CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC-CceeeEEecccccceeEEEEEC
Q 040370 40 HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS-ANCVRSIVGAHGTAEATSANFT 118 (228)
Q Consensus 40 d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~i~~~~~~ 118 (228)
||.|..|-............. ...|..++.... +.+.-. ||.|..|-... ++.-.... ....|..++..
T Consensus 80 ~G~v~~wG~n~~Gqlg~P~~~----~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~---~~~~i~~i~~G 149 (282)
T 3qhy_B 80 DGEVIAWGGNEDGQTTVPAEA----RSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAE---AQSGVTALDGG 149 (282)
T ss_dssp TTEEEEEECCTTSTTCCCGGG----SSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGG---GGSSEEEEEEC
T ss_pred CCEEEEeeCCCCCCCCCCccc----CCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCcc---CCCCeEEEEcc
Confidence 677777765432111110000 235666655433 333334 88888886543 22211111 13456666554
Q ss_pred CCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCC
Q 040370 119 KDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIG 198 (228)
Q Consensus 119 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 198 (228)
.+.. ++ -. ||.++.|-......+..-.. ....+..+... ....++. . ||.++.|-......+..- .....
T Consensus 150 ~~~~-~~-l~-~G~v~~wG~n~~gqlg~p~~--~~~~v~~i~~G--~~hs~al-~-~G~v~~wG~n~~gqlg~p-~~~~~ 219 (282)
T 3qhy_B 150 VYTA-LA-VK-NGGVIAWGDNYFGQTTVPAE--AQSGVDDVAGG--IFHSLAL-K-DGKVIAWGDNRYKQTTVP-TEALS 219 (282)
T ss_dssp SSEE-EE-EE-TTEEEEEECCTTSTTSCCGG--GGSSEEEEEEC--SSEEEEE-E-TTEEEEEECCTTSTTCCC-GGGGS
T ss_pred cCEE-EE-EE-CCEEEEecCCCCCCCCCcee--cCCCeEEEEec--CCEEEEE-E-CCeEEEEECCCCCCCCCC-cccCC
Confidence 3322 22 23 68888887653221110000 11223333332 2233333 3 689999965433222111 11223
Q ss_pred CcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370 199 APRWIEHSPAEAAFITCGTDRSVRFW 224 (228)
Q Consensus 199 ~v~~~~~~~~~~~l~s~~~dg~i~vw 224 (228)
.|..++.......+++ ||.|..|
T Consensus 220 ~v~~i~~G~~h~~al~---~g~v~~w 242 (282)
T 3qhy_B 220 GVSAIASGEWYSLALK---NGKVIAW 242 (282)
T ss_dssp SCCEEEECSSCEEEEE---TTEEEEE
T ss_pred CceEEEcCCCEEEEEE---CCEEEEe
Confidence 5666666544433333 7777777
No 352
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=92.25 E-value=4.1 Score=33.35 Aligned_cols=186 Identities=10% Similarity=0.022 Sum_probs=103.3
Q ss_pred ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCcee
Q 040370 21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCV 100 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 100 (228)
.|.++.. .++ .|..++.+ -+..++..+++..........-....|.++...+++.+.+ |+.+ -+..+|..+++..
T Consensus 104 ~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~ 178 (758)
T 3ott_A 104 DVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFE 178 (758)
T ss_dssp CEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEE
T ss_pred eEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceE
Confidence 4666654 244 45556655 5778887765533221110000134678888877777554 4544 4777887665432
Q ss_pred eEEeccc----ccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370 101 RSIVGAH----GTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN 176 (228)
Q Consensus 101 ~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 176 (228)
.+.... ....|.++...+++..|..|+. +-+..+|..+++... +.. .....+.++...+++...+.+ . +
T Consensus 179 -~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~~-l~~~~i~~i~~d~~g~lWigT-~--~ 251 (758)
T 3ott_A 179 -GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TEA-FHNNSIKSLALDGNGDLLAGT-D--N 251 (758)
T ss_dssp -EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEE-EEE-EEEEEEEEEEECTTCCEEEEE-T--T
T ss_pred -EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEe-ccC-CCCCeEEEEEEcCCCCEEEEe-C--C
Confidence 221111 1234788877777665555554 458889987765432 211 123456677777777777665 2 4
Q ss_pred eEEEEEcCCcceeEEeec------CCCCCcEEEEeCCCCcEEEEecCCC
Q 040370 177 EIVIWDALTAEKVAKWSS------NHIGAPRWIEHSPAEAAFITCGTDR 219 (228)
Q Consensus 177 ~i~i~d~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~dg 219 (228)
.+.+++..+++....... -....|.++....+|.+.+ |+..|
T Consensus 252 Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G 299 (758)
T 3ott_A 252 GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG 299 (758)
T ss_dssp EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS
T ss_pred ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc
Confidence 688888766543222100 1223588888887776544 33445
No 353
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=92.03 E-value=3.5 Score=34.90 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=32.9
Q ss_pred eeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe
Q 040370 111 EATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL 148 (228)
Q Consensus 111 ~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 148 (228)
.+.++...++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46677778888899999999999999999999887754
No 354
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=91.50 E-value=1.7 Score=34.47 Aligned_cols=59 Identities=19% Similarity=0.331 Sum_probs=42.7
Q ss_pred eeeEEeCCCCCeEEEEecC------------CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEe
Q 040370 68 INQVRYSSTGGMYVTASKD------------GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC 127 (228)
Q Consensus 68 i~~~~~~~~~~~l~~~~~d------------g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 127 (228)
.--|+|+|.|++++.-..+ ..+.+.+..+++..+.+..+. ..+++.++|+||++.|+..
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~-gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI-GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT-TCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC-CccCcCeeECCCCCEEEEE
Confidence 3568899999866654322 246666777777766666653 7899999999999887765
No 355
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=91.45 E-value=3 Score=30.26 Aligned_cols=191 Identities=9% Similarity=0.026 Sum_probs=96.0
Q ss_pred CCCCEEEEecCCCeEEEEEcccceEEe--eeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC---CC------C
Q 040370 29 PSGDFLLAGTDHPIAHLYDVNTFQCYL--SANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG---VS------A 97 (228)
Q Consensus 29 ~~~~~l~~~~~d~~i~vw~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~---~~------~ 97 (228)
|+...+++.+.+|.|+--.+...+... ..... . ...+..+........++..+..|.+.-... .. |
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk--e-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G 79 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK--D-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLG 79 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC--T-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC--C-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCC
Confidence 567778889999999877665322100 00111 1 344444444445556777777887665543 22 2
Q ss_pred ceeeE-EecccccceeEEE-EECC--CCCEEEEeeCCCeEEEEEccCCee------EEEEecceeeeeeeEEEECCCCcE
Q 040370 98 NCVRS-IVGAHGTAEATSA-NFTK--DQRFVLSCGKDSTVKLWEVSSGRL------VKQYLGATHTQLRFQAVFNDTEEF 167 (228)
Q Consensus 98 ~~~~~-~~~~~~~~~i~~~-~~~~--~~~~l~~~~~d~~i~~wd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 167 (228)
.++.. +.... ...|.++ ...+ ++.+++..+..|.++--.+..-.. +..+..... ..+..+........
T Consensus 80 ~~i~~~i~L~~-~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~ 157 (323)
T 1wp5_A 80 QHIANIIPIDR-DEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNE 157 (323)
T ss_dssp EEGGGTSCCCT-TCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSE
T ss_pred cChhhccCCCC-CCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCE
Confidence 21111 11111 3345543 4433 356789999999999998753221 111111112 22333333333344
Q ss_pred EEEeeCCCCeEEEEEcCCcce-------eEEeecCCCCCcEEEEeCCCCc-EEEEecCCCCEEEee
Q 040370 168 VLSIDEPSNEIVIWDALTAEK-------VAKWSSNHIGAPRWIEHSPAEA-AFITCGTDRSVRFWK 225 (228)
Q Consensus 168 ~~~~~~~d~~i~i~d~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd 225 (228)
++.... +|.+..++...-.. +.-+.......|.++...+++. .|++.+..|..+.-+
T Consensus 158 i~l~T~-~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~ 222 (323)
T 1wp5_A 158 LFLVTH-NGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMK 222 (323)
T ss_dssp EEEEET-TSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEE
T ss_pred EEEEeC-CCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEE
Confidence 444444 48888787643211 1111112234566654434344 677777777766544
No 356
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.02 E-value=3.8 Score=29.01 Aligned_cols=181 Identities=9% Similarity=0.030 Sum_probs=86.1
Q ss_pred cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce
Q 040370 20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC 99 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 99 (228)
..|..++..... .++. . ||.|..|-......+.. +... ...|..++...... ++. . ||.|..|-......
T Consensus 24 ~~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~---p~~~-~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gq 93 (282)
T 3qhy_B 24 SGVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTM---PAAT-QSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQ 93 (282)
T ss_dssp SSCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSC---CGGG-GSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTST
T ss_pred CCCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCC---CccC-CCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCC
Confidence 356777664332 2222 4 89999997654321111 1111 34677777654332 333 4 89999997554221
Q ss_pred eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEE
Q 040370 100 VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIV 179 (228)
Q Consensus 100 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 179 (228)
+.. +... ...|..++...+. .+.-. ||.|+.|-....-.+..... ....+..+.... .+.++.. ||.++
T Consensus 94 lg~-P~~~-~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~~~~--~~~~i~~i~~G~--~~~~~l~--~G~v~ 162 (282)
T 3qhy_B 94 TTV-PAEA-RSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTVPAE--AQSGVTALDGGV--YTALAVK--NGGVI 162 (282)
T ss_dssp TCC-CGGG-SSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSCCGG--GGSSEEEEEECS--SEEEEEE--TTEEE
T ss_pred CCC-Cccc-CCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCCCcc--CCCCeEEEEccc--CEEEEEE--CCEEE
Confidence 111 1111 2356666655433 33334 89999997654221111000 112233333322 2222222 58888
Q ss_pred EEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 180 IWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 180 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
.|-......+.. +..-...|..++...... ++. .||.|..|=
T Consensus 163 ~wG~n~~gqlg~-p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG 204 (282)
T 3qhy_B 163 AWGDNYFGQTTV-PAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWG 204 (282)
T ss_dssp EEECCTTSTTSC-CGGGGSSEEEEEECSSEE-EEE--ETTEEEEEE
T ss_pred EecCCCCCCCCC-ceecCCCeEEEEecCCEE-EEE--ECCeEEEEE
Confidence 886544222211 111234566666644333 232 477777773
No 357
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.30 E-value=2.3 Score=36.74 Aligned_cols=38 Identities=26% Similarity=0.314 Sum_probs=31.4
Q ss_pred ceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEe
Q 040370 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIV 104 (228)
Q Consensus 67 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 104 (228)
.+.+++..++..++++-+.|+++|+|++.+++++....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 44556666778899999999999999999998887754
No 358
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=89.20 E-value=5.1 Score=31.70 Aligned_cols=61 Identities=16% Similarity=0.288 Sum_probs=43.0
Q ss_pred ceeeEEeCCCCCeEEEEec------------CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEee
Q 040370 67 AINQVRYSSTGGMYVTASK------------DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCG 128 (228)
Q Consensus 67 ~i~~~~~~~~~~~l~~~~~------------dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 128 (228)
....|.|.++|.+.+.... ...|..++..+++....+.... ..+++.++|+||++.|+.+-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~-~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI-GCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT-TCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC-CccccCCEECCCCCEEEEEE
Confidence 4567999999987763321 1257777877777665554332 46789999999999887764
No 359
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=89.15 E-value=2.7 Score=35.55 Aligned_cols=38 Identities=26% Similarity=0.314 Sum_probs=32.3
Q ss_pred ceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEe
Q 040370 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIV 104 (228)
Q Consensus 67 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 104 (228)
.+.+++..++..++++-+.|+++|+|++.+++++....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46677777788899999999999999999998877654
No 360
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=88.46 E-value=5.7 Score=28.91 Aligned_cols=118 Identities=13% Similarity=0.162 Sum_probs=73.1
Q ss_pred CcceEEEEEeC---CCCEEEEecCCCeEEEEEcccceEEe-----eeccceeeeccceeeEEeCCCCCeEEEEecCCeEE
Q 040370 19 THNVRSVSFHP---SGDFLLAGTDHPIAHLYDVNTFQCYL-----SANVPEISVNGAINQVRYSSTGGMYVTASKDGAIR 90 (228)
Q Consensus 19 ~~~v~~~~~~~---~~~~l~~~~~d~~i~vw~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 90 (228)
...|.++..-+ +..+++..+.+|.++--.+....... ...... ...+..+........++..+..|.+.
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke---~D~lv~~~~~~~~d~ill~T~~G~~~ 170 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD---NDELVGAVLCSAGDDLLLVSANGQSI 170 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT---TCCEEEEEEECTTCEEEEEETTSEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC---CCEEEEEEEecCCCEEEEEECCCeEE
Confidence 45566554433 57799999999999999877643211 111111 34455555544556788888889988
Q ss_pred EEeCC--CC----ce---eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC
Q 040370 91 LWDGV--SA----NC---VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS 140 (228)
Q Consensus 91 iwd~~--~~----~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 140 (228)
.+... .- +. ...+... ....|.++...+++.+++..+..|.++.-.+..
T Consensus 171 rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 171 RFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp EEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 88765 21 10 1111111 145566666666667899999999999888754
No 361
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.12 E-value=2.4 Score=36.68 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=31.0
Q ss_pred eeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe
Q 040370 111 EATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL 148 (228)
Q Consensus 111 ~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 148 (228)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 33445556778899999999999999999999887754
No 362
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=87.37 E-value=6.5 Score=28.35 Aligned_cols=192 Identities=10% Similarity=0.060 Sum_probs=99.3
Q ss_pred CCCCEEEEecCCCeEEEEEcccceEEe-------eeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC---C-
Q 040370 29 PSGDFLLAGTDHPIAHLYDVNTFQCYL-------SANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS---A- 97 (228)
Q Consensus 29 ~~~~~l~~~~~d~~i~vw~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~---~- 97 (228)
|+...+++.+.+|.|+--.+...+... ...... ...+..+........++..+..|.++-..... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke---~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~ 82 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND---GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSS 82 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT---TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC--
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC---CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCC
Confidence 566788899999999988776543211 111111 33444554444556677777888877665432 1
Q ss_pred -----ceee-EEecccccceeEEEEECC---CCCEEEEeeCCCeEEEEEccCCeeE-----EEEecceeeeeeeEEEECC
Q 040370 98 -----NCVR-SIVGAHGTAEATSANFTK---DQRFVLSCGKDSTVKLWEVSSGRLV-----KQYLGATHTQLRFQAVFND 163 (228)
Q Consensus 98 -----~~~~-~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~~wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 163 (228)
..+. .+.... ...|..+...+ +..+++..+..|.++.-.+..-... ..+... ....+..+....
T Consensus 83 r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~-~~d~lv~~~~~~ 160 (312)
T 1suu_A 83 RASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLN-DKDFVTSAEIVF 160 (312)
T ss_dssp -----CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCC-TTCCEEEEEEEC
T ss_pred ccCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecC-CCCEEEEEEEeC
Confidence 1100 111111 33444443222 4567888899999999887543211 111111 122233333333
Q ss_pred CCcEEEEeeCCCCeEEEEEcCCcce-------eEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 164 TEEFVLSIDEPSNEIVIWDALTAEK-------VAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 164 ~~~~~~~~~~~d~~i~i~d~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
....++.... +|....+....-.. +..+.......|.++..-+++..+++.+..|..+..++
T Consensus 161 ~~~~i~l~T~-~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~ 229 (312)
T 1suu_A 161 KDEKVICLSK-KGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNM 229 (312)
T ss_dssp TTCEEEEEET-TSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEG
T ss_pred CCCEEEEEeC-CCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEH
Confidence 3444444444 48888887643111 11111122445666655555666778888888776654
No 363
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=87.37 E-value=3 Score=33.18 Aligned_cols=59 Identities=10% Similarity=0.058 Sum_probs=40.5
Q ss_pred eEEEEEeCCCCEEEEecCC------------CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEE
Q 040370 22 VRSVSFHPSGDFLLAGTDH------------PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTA 83 (228)
Q Consensus 22 v~~~~~~~~~~~l~~~~~d------------~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 83 (228)
.--|+|+|.|.++++-..+ ..+.+.+..+++.......+. ...++.++|+|+++.|+..
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~---gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI---GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT---TCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC---CccCcCeeECCCCCEEEEE
Confidence 3568899999866654321 345566666777655544432 6789999999999877765
No 364
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=86.71 E-value=6 Score=31.34 Aligned_cols=61 Identities=15% Similarity=0.042 Sum_probs=42.2
Q ss_pred eeeEEEECCCCcEEEEeeCC-----------CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEe
Q 040370 155 LRFQAVFNDTEEFVLSIDEP-----------SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITC 215 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 215 (228)
..-.+.|.++|...+++... ...+..++..+++....+.......++.++|+||++.|+.+
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 34568889999888865432 12677777777776554422234578999999999988765
No 365
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=85.37 E-value=7.9 Score=27.36 Aligned_cols=194 Identities=11% Similarity=-0.018 Sum_probs=102.0
Q ss_pred cceEEEEEeCCCCEEEEecCCCeEEEE---EcccceEEeeeccceeeeccceeeEEeCC-CCCeEEEEecCCeEEEEeCC
Q 040370 20 HNVRSVSFHPSGDFLLAGTDHPIAHLY---DVNTFQCYLSANVPEISVNGAINQVRYSS-TGGMYVTASKDGAIRLWDGV 95 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~ 95 (228)
+.+..+.-....++|+.-++.|.++-- ++....... + .. . ...|..+.... +..+++..+.+|.++-..+.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l-l~--~-~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~ 98 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-L-KS--R-EEKIVGAFIREKFGNRLLLATKKGYVKKIPLA 98 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-C-SS--T-TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGG
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-c-CC--C-CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHH
Confidence 456666555556677777778876543 333222111 2 11 1 45566664421 46789999999999999865
Q ss_pred CCc----eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee-------EEEEecceeeeeeeEEEECCC
Q 040370 96 SAN----CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL-------VKQYLGATHTQLRFQAVFNDT 164 (228)
Q Consensus 96 ~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 164 (228)
.-. -...+.... ...+..+........++..+..|.+..++...-.. +..+... ....+..+...++
T Consensus 99 ~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~ 176 (276)
T 3no0_A 99 EFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNG 176 (276)
T ss_dssp GTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESS
T ss_pred HhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCC
Confidence 432 111111111 34555555555666788888999988887643211 1111111 1233333333344
Q ss_pred CcEEEEeeCCCCeEEEEEcCCc-------ceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEE
Q 040370 165 EEFVLSIDEPSNEIVIWDALTA-------EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRF 223 (228)
Q Consensus 165 ~~~~~~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v 223 (228)
+.+++.... .|.++...+..- +-...+ ...+.+..+....+...++..+.+|.+..
T Consensus 177 ~~~ll~~T~-~G~~kr~~~~e~~~~~R~gkGv~~i--~~~~~lv~~~~~~~~~~i~~~t~~G~~ir 239 (276)
T 3no0_A 177 EPYLLVITA-KGRVKKISHEEIPKTNRGVKGTEVS--GTKDTLVDLIPIKEEVELLITTKNGKAFY 239 (276)
T ss_dssp CSEEEEEET-TSCEEEEEGGGSCCCCTTCCCEECC--CSSSCEEEEEEESSEEEEEEEETTSCEEE
T ss_pred CCEEEEEeC-CCcEEEeEHHHcccCCCCCcceEEE--cCCCcEEEEEEeCCCCEEEEEcCCCeEEE
Confidence 445555455 488887765322 122222 22334544433333445666667777655
No 366
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=82.36 E-value=3.9 Score=33.28 Aligned_cols=37 Identities=19% Similarity=0.483 Sum_probs=29.8
Q ss_pred eeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEec
Q 040370 111 EATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLG 149 (228)
Q Consensus 111 ~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 149 (228)
.|.++.+ +..++++-+.|+++|+|++++++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555544 467999999999999999999998877654
No 367
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=78.34 E-value=16 Score=26.21 Aligned_cols=195 Identities=9% Similarity=0.008 Sum_probs=94.4
Q ss_pred CCCCEEEEecCCCeEEEEEcccceEEeee----ccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC---CC-----
Q 040370 29 PSGDFLLAGTDHPIAHLYDVNTFQCYLSA----NVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG---VS----- 96 (228)
Q Consensus 29 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~---~~----- 96 (228)
|+...+++.+.+|.|+--.+...+....- ..........+..+........++..+..|.+.-... ..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 45667888899999887766543321110 0000000334444444444556777777787655543 22
Q ss_pred -CceeeE-EecccccceeEEEE-EC--CCCCEEEEeeCCCeEEEEEccCCee-----EEEEecceeeeeeeEEEECCCCc
Q 040370 97 -ANCVRS-IVGAHGTAEATSAN-FT--KDQRFVLSCGKDSTVKLWEVSSGRL-----VKQYLGATHTQLRFQAVFNDTEE 166 (228)
Q Consensus 97 -~~~~~~-~~~~~~~~~i~~~~-~~--~~~~~l~~~~~d~~i~~wd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 166 (228)
|.++.. +... ....|.++. .. +++.+++..+..|.++--.+..-.. +..+........+.......+.
T Consensus 81 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~- 158 (307)
T 1zi0_A 81 RGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGED- 158 (307)
T ss_dssp CCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTC-
T ss_pred CCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCC-
Confidence 221111 1111 134455543 32 3456788999999999998753211 1111111122222222333334
Q ss_pred EEEEeeCCCCeEEEEEcCCcce-------eEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370 167 FVLSIDEPSNEIVIWDALTAEK-------VAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226 (228)
Q Consensus 167 ~~~~~~~~d~~i~i~d~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 226 (228)
.++.... +|.+..++...-.. +.-+.......|.++...+++..+++.+..|.++-.++
T Consensus 159 ~i~l~T~-~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~ 224 (307)
T 1zi0_A 159 EVMLFSA-EGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAV 224 (307)
T ss_dssp EEEEEET-TSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECG
T ss_pred EEEEECC-CCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEH
Confidence 4444344 48777776543211 11111123345666655555566788888888776543
No 368
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=78.34 E-value=5.1 Score=32.65 Aligned_cols=37 Identities=11% Similarity=0.231 Sum_probs=29.8
Q ss_pred ceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEec
Q 040370 67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVG 105 (228)
Q Consensus 67 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 105 (228)
.|.++.+ +..++++-+.|.++|+||+.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555555 467999999999999999999988776655
No 369
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=77.10 E-value=20 Score=26.54 Aligned_cols=115 Identities=10% Similarity=0.054 Sum_probs=56.9
Q ss_pred CcceEEEEEeC-CCCEEEEecCCC----eEEEEEcccceEEeeeccc----eee------eccceeeEEeCCC--CCeEE
Q 040370 19 THNVRSVSFHP-SGDFLLAGTDHP----IAHLYDVNTFQCYLSANVP----EIS------VNGAINQVRYSST--GGMYV 81 (228)
Q Consensus 19 ~~~v~~~~~~~-~~~~l~~~~~d~----~i~vw~~~~~~~~~~~~~~----~~~------~~~~i~~~~~~~~--~~~l~ 81 (228)
...|.+|++.| +...|.+++..| .|.. ..+.++........ ... ....|.++++.|. ...+.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~-s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFR-SDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEE-ESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEE-eCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45799999998 344454454444 3322 22333322222111 000 0135778999872 45666
Q ss_pred EEecCCeEEEEeCCCCceeeEEecc-----------------cccceeEEEEECC-CCCEEEEeeCCCeEEE
Q 040370 82 TASKDGAIRLWDGVSANCVRSIVGA-----------------HGTAEATSANFTK-DQRFVLSCGKDSTVKL 135 (228)
Q Consensus 82 ~~~~dg~v~iwd~~~~~~~~~~~~~-----------------~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~ 135 (228)
.+...+.|...+ ..++....+... .....+.++.++| +...++.+..++.|..
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~ 203 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFE 203 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEE
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEE
Confidence 666666665553 233333222210 0123578899988 3445555554444443
No 370
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=76.40 E-value=20 Score=26.12 Aligned_cols=201 Identities=10% Similarity=-0.056 Sum_probs=99.2
Q ss_pred cceEEEEEeCCCCEEEEecCCCeEEEEEccc---------ceEEeeeccceeeeccceeeEE-eCC--CCCeEEEEecCC
Q 040370 20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNT---------FQCYLSANVPEISVNGAINQVR-YSS--TGGMYVTASKDG 87 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~---------~~~~~~~~~~~~~~~~~i~~~~-~~~--~~~~l~~~~~dg 87 (228)
+.+..+......+.|+.-+..|.++-..... |..+..+-.. .. ...|..+. ..+ +..+++..+.+|
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l-~~-~e~i~~~~~~~~~~~e~~~v~~T~~G 119 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAF-QP-EERIAQVIQIRGYTDAPYLVLATRNG 119 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTC-CT-TCCEEEEEEESSTTSSSEEEEEETTS
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCC-CC-CCEEEEEEEeccCCCCCEEEEEcCCC
Confidence 3455554444556666666677655444321 1211111111 11 34455543 332 467899999999
Q ss_pred eEEEEeCCCCce-----eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEcc--CCee-------EEEEecceee
Q 040370 88 AIRLWDGVSANC-----VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVS--SGRL-------VKQYLGATHT 153 (228)
Q Consensus 88 ~v~iwd~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~--~~~~-------~~~~~~~~~~ 153 (228)
.++--.+..... ...+.... ...+..+........++..+..|.+..+... .-.. +..+... ..
T Consensus 120 ~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~ 197 (327)
T 3uc1_A 120 LVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-ID 197 (327)
T ss_dssp EEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TT
T ss_pred EEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CC
Confidence 999987654221 11112222 3445555444455678888889988888776 2111 1111111 22
Q ss_pred eeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcce-------eEEee-cCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370 154 QLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK-------VAKWS-SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225 (228)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-------~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 225 (228)
..+..+...+++.+++.... .|.++.-.+..-.. +..+. ..-.+.+..+....+...++..+.+|.+.-++
T Consensus 198 d~Vv~~~~~~~~~~ll~~T~-~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~ 276 (327)
T 3uc1_A 198 DRLLSLNVVREGTYLLVATS-GGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTA 276 (327)
T ss_dssp CCEEEEEECCTTCEEEEEET-TSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEE
T ss_pred CEEEEEEEECCCCEEEEEeC-CCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEe
Confidence 33444444445556655555 58888776532211 11111 11123444444333344455555666655443
No 371
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=74.97 E-value=23 Score=26.28 Aligned_cols=110 Identities=16% Similarity=0.172 Sum_probs=62.5
Q ss_pred EeCCCCEEEEecCCCeEEEEEcccceE-------EeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEe---CCC
Q 040370 27 FHPSGDFLLAGTDHPIAHLYDVNTFQC-------YLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD---GVS 96 (228)
Q Consensus 27 ~~~~~~~l~~~~~d~~i~vw~~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd---~~~ 96 (228)
+-|+...+++.+.+|.|+--.+...+. ........ ...+..+........++..+..|.+.-+. +..
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke---~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~ 79 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE---EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPE 79 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC---CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCB
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC---CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcC
Confidence 346788999999999998876644221 11111111 34455555544555666677778766554 322
Q ss_pred ------CceeeE-EecccccceeEEE-EECC--CCCEEEEeeCCCeEEEEEccC
Q 040370 97 ------ANCVRS-IVGAHGTAEATSA-NFTK--DQRFVLSCGKDSTVKLWEVSS 140 (228)
Q Consensus 97 ------~~~~~~-~~~~~~~~~i~~~-~~~~--~~~~l~~~~~d~~i~~wd~~~ 140 (228)
|..+.. +.... ...|.++ .... ++.+|+.++..|.++.-.+..
T Consensus 80 ~~r~a~G~~i~~ll~L~~-~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e 132 (370)
T 3l6v_A 80 AGSNARGRPIINWIPLES-GERVQAVLPVREYADNRYVFMATRNGTVKKTPLSE 132 (370)
T ss_dssp CCTTSCCEEGGGSCCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCcccCCcCHhhccCCCC-CCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHH
Confidence 221111 11111 3445444 3332 456899999999999988754
No 372
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=74.79 E-value=23 Score=26.17 Aligned_cols=102 Identities=8% Similarity=-0.066 Sum_probs=51.1
Q ss_pred CCEEEEecCCCeEEEEEccc-ceEEeeeccceeeeccceeeEEeCC-CCCeEEEEecCC----eEEEEeCCCCceeeEEe
Q 040370 31 GDFLLAGTDHPIAHLYDVNT-FQCYLSANVPEISVNGAINQVRYSS-TGGMYVTASKDG----AIRLWDGVSANCVRSIV 104 (228)
Q Consensus 31 ~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg----~v~iwd~~~~~~~~~~~ 104 (228)
...|.+|+..| +.+++... +........ ... ...|.+|++.| +...+..+...| .|...+ ..++....+.
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~-~~~-~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~ 97 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGP-VFL-GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEAT 97 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEE-EST-TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECS
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCc-cCC-CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECC
Confidence 34677788777 55555432 222211110 011 45799999998 333455555555 444432 3333322222
Q ss_pred cc----c--------ccceeEEEEECC-C-CCEEEEeeCCCeEEEE
Q 040370 105 GA----H--------GTAEATSANFTK-D-QRFVLSCGKDSTVKLW 136 (228)
Q Consensus 105 ~~----~--------~~~~i~~~~~~~-~-~~~l~~~~~d~~i~~w 136 (228)
.. . ....|.++++.| + ...+..+...+.|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S 143 (394)
T 3b7f_A 98 RPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRS 143 (394)
T ss_dssp BCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEE
T ss_pred ccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEE
Confidence 11 0 012577888887 2 4566666666655544
No 373
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=72.78 E-value=22 Score=25.06 Aligned_cols=119 Identities=13% Similarity=0.120 Sum_probs=73.2
Q ss_pred ecCcceEEEEEeC--CCCEEEEecCCCeEEEEEcccce----EEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEE
Q 040370 17 QDTHNVRSVSFHP--SGDFLLAGTDHPIAHLYDVNTFQ----CYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIR 90 (228)
Q Consensus 17 ~~~~~v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 90 (228)
...+.|..+.. + +..+++..+.+|.++-..+.... -........ ...+..+........++..+..|.+.
T Consensus 65 ~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke---gD~l~~~~~~~~~~~ill~T~~G~~~ 140 (276)
T 3no0_A 65 SREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE---GDEVVSIASSVDETHILLFTKKGRVA 140 (276)
T ss_dssp STTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT---TCCEEEEEECCSSCEEEEEETTSEEE
T ss_pred CCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC---CCEEEEEEEeCCCCEEEEEECCCEEE
Confidence 34556666644 4 46789999999999999887643 011111111 34555555555566788888899988
Q ss_pred EEeCCCC-------ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC
Q 040370 91 LWDGVSA-------NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS 140 (228)
Q Consensus 91 iwd~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 140 (228)
.++...- .-...+.... ...|..+...+++..++..+..|.++...+..
T Consensus 141 r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 141 RFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp EEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred EEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 8865321 1111122222 34565555555567888889999999988754
No 374
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=70.67 E-value=43 Score=27.47 Aligned_cols=196 Identities=10% Similarity=0.058 Sum_probs=98.5
Q ss_pred ceEEEE-EeCCCCEEEEe-----cCCCeEEEEEcccceEEeeeccceeeecc-----ceeeEEeCCCCCeEEEEe-----
Q 040370 21 NVRSVS-FHPSGDFLLAG-----TDHPIAHLYDVNTFQCYLSANVPEISVNG-----AINQVRYSSTGGMYVTAS----- 84 (228)
Q Consensus 21 ~v~~~~-~~~~~~~l~~~-----~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~----- 84 (228)
....+. ++|++++++.+ ++-..++++|+.+++.+.....+... .+ ....++|..+. .++.+.
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k-~~~~~~~~~~~~~W~d~~-~~~~~~~~~~~ 207 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITN-SGKLLEGKFTYPTWINKD-TIIFNLVLHKN 207 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCT-TCCBCCEETCCEEEEETT-EEEECCCCSTT
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccc-cccccccccceeeEECCC-EEEEEeCCCCC
Confidence 344555 88999988753 33457999999998865321111110 10 12344676333 343332
Q ss_pred ------cCCeEEEEeCCCCc--eeeEEecccccceeEEEEECCCCCE-----EEEeeC---CCeEEEEEccC--CeeEEE
Q 040370 85 ------KDGAIRLWDGVSAN--CVRSIVGAHGTAEATSANFTKDQRF-----VLSCGK---DSTVKLWEVSS--GRLVKQ 146 (228)
Q Consensus 85 ------~dg~v~iwd~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~-----l~~~~~---d~~i~~wd~~~--~~~~~~ 146 (228)
....|+.|.+-+.. -...+.... ...-.+...++++++ +++.+. ...+.+.|... ++. ..
T Consensus 208 ~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~ 285 (711)
T 4hvt_A 208 EITSSLYPNSLYIWKRGESIEKAKKLFEVPK-EYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QK 285 (711)
T ss_dssp CBCTTSSBCEEEEEETTSCGGGCEEEEECCT-TSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EE
T ss_pred CcCcCCCCCEEEEEECCCChHHCeEEeccCC-CceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eE
Confidence 12568888776542 222333322 222334555666652 444332 24566667653 332 22
Q ss_pred EecceeeeeeeEEEECCCCcEEEEeeC---------CCCeEEEEEcCCcc-------eeEE-eecCCCCCcEEEEeCCCC
Q 040370 147 YLGATHTQLRFQAVFNDTEEFVLSIDE---------PSNEIVIWDALTAE-------KVAK-WSSNHIGAPRWIEHSPAE 209 (228)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~d~~i~i~d~~~~~-------~~~~-~~~~~~~~v~~~~~~~~~ 209 (228)
+...... .+.....+..++.+.. ..+.|...|+.++. .... +.......+..+.+..+
T Consensus 286 l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 360 (711)
T 4hvt_A 286 INMPSDA----TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD- 360 (711)
T ss_dssp CCSCTTC----EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-
T ss_pred eecCCcc----eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-
Confidence 2221111 1122335555553322 35789999987642 1222 32233446778888765
Q ss_pred cEEEEecCCCC--EEEee
Q 040370 210 AAFITCGTDRS--VRFWK 225 (228)
Q Consensus 210 ~~l~s~~~dg~--i~vwd 225 (228)
.++++...++. +.+++
T Consensus 361 ~l~~~~~~~~~~~l~~~~ 378 (711)
T 4hvt_A 361 RVFLATYDNVVAKVVTFT 378 (711)
T ss_dssp CEEEEEEETTEEEEEEEC
T ss_pred EEEEEEEECCEEEEEEEE
Confidence 56666666664 44444
No 375
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=65.00 E-value=33 Score=27.89 Aligned_cols=57 Identities=5% Similarity=0.084 Sum_probs=36.9
Q ss_pred eEEEEecCCeEE-EEeCCCCc-------eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEE
Q 040370 79 MYVTASKDGAIR-LWDGVSAN-------CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKL 135 (228)
Q Consensus 79 ~l~~~~~dg~v~-iwd~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~ 135 (228)
.++.|..+|.|. +.....+. .+..+.......+|..+.++++.+.|+.++.++.+++
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 567788888764 33222111 2223333334678899999999999999998876665
No 376
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=62.49 E-value=31 Score=27.14 Aligned_cols=71 Identities=14% Similarity=0.089 Sum_probs=44.4
Q ss_pred CcceEEEEEeCCC--CEEEEecCCCeEEEEEcccce----EEeeeccceeeecccee-eEEeCCCCCeEEEEecCCeEEE
Q 040370 19 THNVRSVSFHPSG--DFLLAGTDHPIAHLYDVNTFQ----CYLSANVPEISVNGAIN-QVRYSSTGGMYVTASKDGAIRL 91 (228)
Q Consensus 19 ~~~v~~~~~~~~~--~~l~~~~~d~~i~vw~~~~~~----~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~v~i 91 (228)
....++++....+ ..+..|+.+|.|.-..+.... ....+.... . ..+|. .+.++++..+|+.++.++.++|
T Consensus 399 ~~~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~-~-~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 399 RDRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFK-D-GSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp SSCEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCT-T-CCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ccceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeec-C-CCccccceEEccCCCeEEEEecccccee
Confidence 3467777776633 456689999987765554321 122222211 1 35674 8999999889999887765555
No 377
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=60.94 E-value=66 Score=26.15 Aligned_cols=70 Identities=14% Similarity=0.152 Sum_probs=43.4
Q ss_pred cceEEEEEe----CCC---CEEEEecCCCeEEEE-EcccceEE-eeeccceeeeccceeeEEeCCCC--CeEEEEecCCe
Q 040370 20 HNVRSVSFH----PSG---DFLLAGTDHPIAHLY-DVNTFQCY-LSANVPEISVNGAINQVRYSSTG--GMYVTASKDGA 88 (228)
Q Consensus 20 ~~v~~~~~~----~~~---~~l~~~~~d~~i~vw-~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~ 88 (228)
...++|+.. .++ ..+..|+.+|.|.-. .......+ ...... ....+|..|.++++. ..|+.++.++.
T Consensus 397 ~~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~--~~~~pI~~l~l~~~~~~~~Lyv~s~~~V 474 (663)
T 1olz_A 397 VNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLF--QDFEPVQTLLLSSKKGNRFVYAGSNSGV 474 (663)
T ss_dssp CCEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECC--TTCCCCCEEEECCSSSSCEEEEECSSCE
T ss_pred CceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEEeccc--CCCCcceeeEeccCCCccEEEEEEcCeE
Confidence 346777764 233 357789999987543 33332221 111111 114688899999987 88999988877
Q ss_pred EEE
Q 040370 89 IRL 91 (228)
Q Consensus 89 v~i 91 (228)
+++
T Consensus 475 ~~v 477 (663)
T 1olz_A 475 VQA 477 (663)
T ss_dssp EEE
T ss_pred EEE
Confidence 766
No 378
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=60.51 E-value=41 Score=26.15 Aligned_cols=57 Identities=7% Similarity=0.093 Sum_probs=36.2
Q ss_pred eEEEEecCCeEEEEeCC-CCc-------eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEE
Q 040370 79 MYVTASKDGAIRLWDGV-SAN-------CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKL 135 (228)
Q Consensus 79 ~l~~~~~dg~v~iwd~~-~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~ 135 (228)
.++.|..+|.|.=.-+. .+. .+..+.......+|..+.++++..+|+.++.++.++|
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 56678888876443322 211 2233333222568899999999999999988876654
No 379
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=58.86 E-value=54 Score=24.49 Aligned_cols=139 Identities=8% Similarity=0.094 Sum_probs=76.1
Q ss_pred CcCCcc--ccceeEEEee----cCcceEEEEEe---CC----CCEEEEe-cCCCeEEEEEcccceEEeeecc---ce--e
Q 040370 2 FDFSKA--TAKRAFRVIQ----DTHNVRSVSFH---PS----GDFLLAG-TDHPIAHLYDVNTFQCYLSANV---PE--I 62 (228)
Q Consensus 2 wd~~~~--~~~~~~~~~~----~~~~v~~~~~~---~~----~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~---~~--~ 62 (228)
||+.+. +..+.+.+.. ....+..+++. |+ +.++..+ ...+-|.|+|+.+++....... +. .
T Consensus 128 ~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~ 207 (381)
T 3q6k_A 128 YDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPT 207 (381)
T ss_dssp EESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCE
T ss_pred EECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCc
Confidence 566655 4444444421 24568888887 22 2343333 3467889999998876544321 10 0
Q ss_pred ---------eeccceeeEEeCCC----CCeEEEEecCC-eEEEEe---CCCC---ceeeEEecccccceeEEEEEC-CCC
Q 040370 63 ---------SVNGAINQVRYSST----GGMYVTASKDG-AIRLWD---GVSA---NCVRSIVGAHGTAEATSANFT-KDQ 121 (228)
Q Consensus 63 ---------~~~~~i~~~~~~~~----~~~l~~~~~dg-~v~iwd---~~~~---~~~~~~~~~~~~~~i~~~~~~-~~~ 121 (228)
.....+..++.+|+ ++.|.-..-.+ .+.--. +++. ..++.+........-..+++. .+|
T Consensus 208 ~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G 287 (381)
T 3q6k_A 208 KFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTK 287 (381)
T ss_dssp EEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTC
T ss_pred ceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCC
Confidence 01246788899987 66666555433 222222 2222 122222221001233456675 577
Q ss_pred CEEEEeeCCCeEEEEEccC
Q 040370 122 RFVLSCGKDSTVKLWEVSS 140 (228)
Q Consensus 122 ~~l~~~~~d~~i~~wd~~~ 140 (228)
..+++--....|..|+..+
T Consensus 288 ~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 288 VIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEEEEESSSSEEEEEETTS
T ss_pred eEEEEeccCCeEEEEeCCC
Confidence 7777777888999999875
No 380
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=58.83 E-value=30 Score=27.25 Aligned_cols=68 Identities=7% Similarity=0.085 Sum_probs=39.7
Q ss_pred eeeEEeCCC--CCeEEEEecCCeEEEEeCCCCc----eeeEEecccccceeE-EEEECCCCCEEEEeeCCCeEEE
Q 040370 68 INQVRYSST--GGMYVTASKDGAIRLWDGVSAN----CVRSIVGAHGTAEAT-SANFTKDQRFVLSCGKDSTVKL 135 (228)
Q Consensus 68 i~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~d~~i~~ 135 (228)
.++|+.... -..++.|..+|.|.=..+.... ....+.......+|. .+.+++++.+|+.++.++.+++
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 444444432 2356778888887655543221 223333322245674 7889998888888877654444
No 381
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=57.55 E-value=44 Score=26.24 Aligned_cols=69 Identities=10% Similarity=0.187 Sum_probs=43.3
Q ss_pred cceEEEEEeC-CC-CEEEEecCCCeEEEEEcc-cce--EEeeeccceeeeccce-eeEEeCCCCCeEEEEecCCeEEE
Q 040370 20 HNVRSVSFHP-SG-DFLLAGTDHPIAHLYDVN-TFQ--CYLSANVPEISVNGAI-NQVRYSSTGGMYVTASKDGAIRL 91 (228)
Q Consensus 20 ~~v~~~~~~~-~~-~~l~~~~~d~~i~vw~~~-~~~--~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~v~i 91 (228)
...++|+... ++ ..+..|+.+|.|.-.-+. ++. ........ . ..+| ..+.++++...|+.++.++.+++
T Consensus 387 ~~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~--~-~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 387 IQLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQ--Q-GSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp CCEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEESS--T-TSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred CceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccC--C-CCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 4577777765 33 345578899988754443 211 11122221 1 4567 48999998889999988877766
No 382
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=55.62 E-value=70 Score=24.89 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=42.7
Q ss_pred ceEEEEEeC----CCC--EEEEecCCCeEEEEEcccce--------EEeeeccceeeeccceeeEEeCCCCCeEEEEecC
Q 040370 21 NVRSVSFHP----SGD--FLLAGTDHPIAHLYDVNTFQ--------CYLSANVPEISVNGAINQVRYSSTGGMYVTASKD 86 (228)
Q Consensus 21 ~v~~~~~~~----~~~--~l~~~~~d~~i~vw~~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 86 (228)
..++|+... ++. .+..|+.+|.|.-.-+.... .+..+... ....+|..|.++++..+|+.++.+
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~--~~~~pI~~m~l~~~~~~Lyv~s~~ 482 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVF--REPTTISAMELSTKQQQLYIGSTA 482 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCS--SSCCCCCEEEEETTTTEEEEEBSS
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeec--CCCCccceEEEcCCCCEEEEEECC
Confidence 567777754 233 46678999977544332211 11111221 114688999999999999999988
Q ss_pred CeEEE
Q 040370 87 GAIRL 91 (228)
Q Consensus 87 g~v~i 91 (228)
+.++|
T Consensus 483 ~V~~v 487 (495)
T 1q47_A 483 GVAQL 487 (495)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 76665
No 383
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=51.02 E-value=74 Score=25.45 Aligned_cols=57 Identities=9% Similarity=0.064 Sum_probs=36.0
Q ss_pred eEEEEecCCeEEEEeC-CCC----c-eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEE
Q 040370 79 MYVTASKDGAIRLWDG-VSA----N-CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKL 135 (228)
Q Consensus 79 ~l~~~~~dg~v~iwd~-~~~----~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~ 135 (228)
.++.|..+|.|.-.-+ ..+ . .+..+.......+|..+.++++...|+.++.++.+++
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 5677888888653322 222 1 1222322123567889999999889998887776665
No 384
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=50.09 E-value=68 Score=23.03 Aligned_cols=162 Identities=12% Similarity=0.088 Sum_probs=82.9
Q ss_pred cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEE-------eeeccceeeeccceeeEEeCC---CCCeEEEEecCCeE
Q 040370 20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCY-------LSANVPEISVNGAINQVRYSS---TGGMYVTASKDGAI 89 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~v 89 (228)
+.+..+......+.++..+..|.++-.....-... .............|..+...+ +..+++..+..|.+
T Consensus 47 D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~ 126 (312)
T 1suu_A 47 DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKI 126 (312)
T ss_dssp CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEE
T ss_pred CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeE
Confidence 34444444445556666777787666654321100 000000001133454443322 45678888999999
Q ss_pred EEEeCCCCce-----eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee-------EEEEecceeeeeee
Q 040370 90 RLWDGVSANC-----VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL-------VKQYLGATHTQLRF 157 (228)
Q Consensus 90 ~iwd~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-------~~~~~~~~~~~~~~ 157 (228)
+.-.+..-.. ...+.... ...+..+........++..+.+|.+..+....-.. +..+... ....+.
T Consensus 127 kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv 204 (312)
T 1suu_A 127 ARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFV 204 (312)
T ss_dssp EEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEE
T ss_pred EEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEE
Confidence 9987743211 11122222 34555554444456788888999999988754211 1111111 123334
Q ss_pred EEEECCCCcEEEEeeCCCCeEEEEEcC
Q 040370 158 QAVFNDTEEFVLSIDEPSNEIVIWDAL 184 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~ 184 (228)
.+...+++..+++... .|.....++.
T Consensus 205 ~~~~v~~~~~l~~vt~-~G~~kr~~~~ 230 (312)
T 1suu_A 205 KVLSVKENPYLLIVSE-NGYGKRLNMS 230 (312)
T ss_dssp EEEECTTCSEEEEEET-TSEEEEEEGG
T ss_pred EEEEECCCCeEEEEEC-CCceEEEEHH
Confidence 4434344555555555 5888888764
No 385
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=48.91 E-value=79 Score=23.40 Aligned_cols=115 Identities=12% Similarity=0.130 Sum_probs=61.6
Q ss_pred ceEEEEEeCCCCEEEEecCCCeEEEEEcccce---------EEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370 21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ---------CYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL 91 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 91 (228)
.+..++.+......++-..||.|..|-..... ........... ...|..++.. ..+.+.-..||.|..
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~-~~~i~~va~G--~~hs~alt~~G~v~~ 182 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLR-GIEVVDVAAG--GAHSACVTAAGDLYT 182 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT-TSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccC-CCeEEEEEeC--cCeEEEEeCCCeEEE
Confidence 45556666666666677789999999653311 00111110000 2245555543 445566668899999
Q ss_pred EeCCC-Cc----------eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEcc
Q 040370 92 WDGVS-AN----------CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVS 139 (228)
Q Consensus 92 wd~~~-~~----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~ 139 (228)
|-... ++ ....+... ....+..++........+.-..||.|+.|-..
T Consensus 183 wG~n~~GqLG~~~~~~~~~p~~v~~~-~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n 240 (389)
T 3kci_A 183 WGKGRYGRLGHSDSEDQLKPKLVEAL-QGHRVVDIACGSGDAQTLCLTDDDTVWSWGDG 240 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGG-TTSCEEEEEECCSSCEEEEEETTTEEEEEECC
T ss_pred eCCCCCCCcCCCCCcccccceEeccc-CCCeEEEEEEcCCCcEEEEEccCCEEEEEeCC
Confidence 96432 11 11111111 13356666654433456666788999999643
No 386
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=44.91 E-value=1.2e+02 Score=24.27 Aligned_cols=106 Identities=8% Similarity=0.140 Sum_probs=56.4
Q ss_pred CeEEEEEcccceEEeeeccc----eeeeccceeeEEeCCCCC-eEEEEecCCe---------------------------
Q 040370 41 PIAHLYDVNTFQCYLSANVP----EISVNGAINQVRYSSTGG-MYVTASKDGA--------------------------- 88 (228)
Q Consensus 41 ~~i~vw~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~-~l~~~~~dg~--------------------------- 88 (228)
..|.+|+++ ++.+...... .+.|-..+....|.-||+ .++....+|+
T Consensus 151 ~~l~aY~ld-G~~LW~idlg~ni~aGa~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpE 229 (591)
T 2zux_A 151 VLIDAYKLD-GTKLWRINLGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPE 229 (591)
T ss_dssp CEEEEECTT-SCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCC
T ss_pred cEEEEEECC-CCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCc
Confidence 357777776 4444433321 111133466667777775 5666655554
Q ss_pred -EEEEeCCCCceeeEEecccccce---------------eEEEEECC-CCCEEEEee---CCCeEEEEEccCCeeEEEE
Q 040370 89 -IRLWDGVSANCVRSIVGAHGTAE---------------ATSANFTK-DQRFVLSCG---KDSTVKLWEVSSGRLVKQY 147 (228)
Q Consensus 89 -v~iwd~~~~~~~~~~~~~~~~~~---------------i~~~~~~~-~~~~l~~~~---~d~~i~~wd~~~~~~~~~~ 147 (228)
+.++|-.+|+.+.++........ ..++++-. +...++.+- ....+..||.+.+++....
T Consensus 230 yL~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W 308 (591)
T 2zux_A 230 YLTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLW 308 (591)
T ss_dssp EEEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEE
T ss_pred EEEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEE
Confidence 78888888887777654211111 23333321 222333332 2235888998887664443
No 387
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=43.73 E-value=72 Score=25.52 Aligned_cols=71 Identities=14% Similarity=0.058 Sum_probs=42.9
Q ss_pred cceEEEEEeC----CC---CEEEEecCCCeEEEEEccc-c----e-EEeeeccceeeeccceeeEEeCCCCCeEEEEecC
Q 040370 20 HNVRSVSFHP----SG---DFLLAGTDHPIAHLYDVNT-F----Q-CYLSANVPEISVNGAINQVRYSSTGGMYVTASKD 86 (228)
Q Consensus 20 ~~v~~~~~~~----~~---~~l~~~~~d~~i~vw~~~~-~----~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 86 (228)
...+.++... ++ ..+..|+.+|.|.-.-... + . .+....... . ..+|..+.++++...|+.++.+
T Consensus 362 ~~~T~IaVd~v~a~~g~~ytVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~-~-~~pi~~L~ls~~~~~LyV~s~~ 439 (590)
T 3nvq_A 362 YHYQKVAVHRMQASHGETFHVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFR-R-AAAIQTMSLDAERRKLYVSSQW 439 (590)
T ss_dssp SCEEEEEEEEEECTTSCEEEEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCS-S-CCCCCEEEEETTTTEEEEECSS
T ss_pred CcEEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccC-C-CCceeeEEEcCCCCEEEEEecc
Confidence 4566666542 33 3566788899876443322 2 1 111121111 1 5678999999988899999888
Q ss_pred CeEEEE
Q 040370 87 GAIRLW 92 (228)
Q Consensus 87 g~v~iw 92 (228)
+.+++-
T Consensus 440 ~V~qVP 445 (590)
T 3nvq_A 440 EVSQVP 445 (590)
T ss_dssp EEEEEE
T ss_pred eEEEcc
Confidence 776663
No 388
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=38.96 E-value=96 Score=21.53 Aligned_cols=143 Identities=8% Similarity=-0.027 Sum_probs=68.4
Q ss_pred eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC-------CeeEEEEecce
Q 040370 79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS-------GRLVKQYLGAT 151 (228)
Q Consensus 79 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~-------~~~~~~~~~~~ 151 (228)
..++.+.+|.|+--...... ...+.... ...+..+........++..+..|.++-..... |..+.....-.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~-~~~~~lke-~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDID-APGLNYKA-GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCC-STTSCCCT-TCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred EEEEEeCCCEEEEeeCCcCC-ceeccCCC-CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 45666777777765543211 01111111 33344433333444566667778766655432 22111110011
Q ss_pred eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCc-------ceeEEeecCCCCCcEEEEeC-CCCcEEEEecCCCCEEE
Q 040370 152 HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA-------EKVAKWSSNHIGAPRWIEHS-PAEAAFITCGTDRSVRF 223 (228)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~dg~i~v 223 (228)
....+..+....++.+++.... .|.++...+..- .....+ . -...+..+... ..+..++..+.+|.+..
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~-~G~~Kr~~~~e~~~~~r~G~~~i~L-~-~~d~lv~~~~~~~~~~~i~l~T~~G~~lr 158 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASD-AGYGFVCTFNDLVARNRAGKALITL-P-ENAHVMPPVVIEDASDMLLAITQAGRMLM 158 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBT-TSEEEEEEGGGGCCCSTTCEECBCC-C-TTCCBCCCEECCCTTCEEEEEETTSEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeC-CCeEEEeEHHHhcccCcCceEEEEE-C-CCCEEEEEEEecCCCCEEEEEcCCCeEEE
Confidence 2233444433334555555444 699998876432 222222 1 22345444444 34456777788888776
Q ss_pred eee
Q 040370 224 WKE 226 (228)
Q Consensus 224 wd~ 226 (228)
+.+
T Consensus 159 f~~ 161 (256)
T 1zvt_A 159 FPV 161 (256)
T ss_dssp EEG
T ss_pred EEH
Confidence 654
No 389
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=37.71 E-value=1.4e+02 Score=23.45 Aligned_cols=57 Identities=5% Similarity=-0.070 Sum_probs=34.9
Q ss_pred EEEEeeCCCCeEEEEEcC-Cc--ceeEEeecCCCCCc-EEEEeCCCCcEEEEecCCCCEEE
Q 040370 167 FVLSIDEPSNEIVIWDAL-TA--EKVAKWSSNHIGAP-RWIEHSPAEAAFITCGTDRSVRF 223 (228)
Q Consensus 167 ~~~~~~~~d~~i~i~d~~-~~--~~~~~~~~~~~~~v-~~~~~~~~~~~l~s~~~dg~i~v 223 (228)
.++..|..+|.|.-.-+. .+ .....+......+| ..+.++++...|+.++.++.++|
T Consensus 401 tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 401 TIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp EEEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 344445557877654433 21 12233322345677 48999999999999988887665
No 390
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=36.31 E-value=1.1e+02 Score=21.29 Aligned_cols=115 Identities=10% Similarity=0.023 Sum_probs=63.4
Q ss_pred ceEEEEEeCCCCEEEEecCCCeEEEEEccc-------ceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEe
Q 040370 21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNT-------FQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD 93 (228)
Q Consensus 21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~-------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd 93 (228)
.+..+......+.|+..+..|.++-..... |..+.. .........|.++....++.+++.++..|.++...
T Consensus 34 ~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~--~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~ 111 (256)
T 1zvt_A 34 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTG--KLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCT 111 (256)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGG--TCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEE
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeee--eecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeE
Confidence 344444444455566667778765554432 111101 10111144566664434566788899999999987
Q ss_pred CCCC-------ceeeEEecccccceeEEEEEC-CCCCEEEEeeCCCeEEEEEccC
Q 040370 94 GVSA-------NCVRSIVGAHGTAEATSANFT-KDQRFVLSCGKDSTVKLWEVSS 140 (228)
Q Consensus 94 ~~~~-------~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~~wd~~~ 140 (228)
+..- .....+.. ...+..+... .++..++..+.+|.+..+++..
T Consensus 112 ~~e~~~~~r~G~~~i~L~~---~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~e 163 (256)
T 1zvt_A 112 FNDLVARNRAGKALITLPE---NAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD 163 (256)
T ss_dssp GGGGCCCSTTCEECBCCCT---TCCBCCCEECCCTTCEEEEEETTSEEEEEEGGG
T ss_pred HHHhcccCcCceEEEEECC---CCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHH
Confidence 6431 22222221 3344444444 3455788888899988888754
No 391
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=35.29 E-value=69 Score=18.81 Aligned_cols=10 Identities=40% Similarity=0.332 Sum_probs=7.0
Q ss_pred CCCeEEEEEc
Q 040370 174 PSNEIVIWDA 183 (228)
Q Consensus 174 ~d~~i~i~d~ 183 (228)
.||.+.++|-
T Consensus 65 ~dGNLVl~d~ 74 (113)
T 3mez_B 65 HSGELDITDD 74 (113)
T ss_dssp TTSCEEEECT
T ss_pred CCCcEEEECC
Confidence 3678888774
No 392
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=33.29 E-value=2.1e+02 Score=23.79 Aligned_cols=63 Identities=10% Similarity=0.094 Sum_probs=38.5
Q ss_pred ccceeeEEeCCC-CCeEEEEecCCeEEEEeCCCCceeeEEeccc-----ccceeEEEEECCC-CCEEEEee
Q 040370 65 NGAINQVRYSST-GGMYVTASKDGAIRLWDGVSANCVRSIVGAH-----GTAEATSANFTKD-QRFVLSCG 128 (228)
Q Consensus 65 ~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-----~~~~i~~~~~~~~-~~~l~~~~ 128 (228)
.+.|.+|+++|. ...++.+...+.|...+ ..++.-..+.... ....+.+++++|. .+.++.+.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEe
Confidence 568999999995 45667777777666554 3444444433211 1346899999984 34444443
No 393
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=32.41 E-value=1.4e+02 Score=24.51 Aligned_cols=57 Identities=7% Similarity=0.123 Sum_probs=36.4
Q ss_pred eEEEEecCCeEEEEeCCC-C---ceeeEEeccccccee-EEEEECCCCCEEEEeeCCCeEEE
Q 040370 79 MYVTASKDGAIRLWDGVS-A---NCVRSIVGAHGTAEA-TSANFTKDQRFVLSCGKDSTVKL 135 (228)
Q Consensus 79 ~l~~~~~dg~v~iwd~~~-~---~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~d~~i~~ 135 (228)
.++.|..+|.|.-.-+.. . ..+..+.......+| ..+.++++..+|+.++..+.+++
T Consensus 414 VlFLGT~~G~l~Kv~~~~~~~~~~~~ee~~v~~~~~pI~~~l~l~~~~~~Lyv~s~~~V~qv 475 (681)
T 3oky_A 414 VVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 475 (681)
T ss_dssp EEEEEBTTSEEEEEECCCTTTCCEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred EEEEECCCceEEEEEECCCCCceEEEEEeeeccCCCceeeeeEEcCCCCEEEEEecCEEEEE
Confidence 567788899876544332 1 122333222224566 68889998889999888777666
No 394
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=32.35 E-value=2.1e+02 Score=23.42 Aligned_cols=70 Identities=16% Similarity=0.154 Sum_probs=42.0
Q ss_pred cceEEEEEe----CCCC--EEEEecCCCeEE-EEEcccce-------EEeeeccceeeeccceeeEEeCCCCCeEEEEec
Q 040370 20 HNVRSVSFH----PSGD--FLLAGTDHPIAH-LYDVNTFQ-------CYLSANVPEISVNGAINQVRYSSTGGMYVTASK 85 (228)
Q Consensus 20 ~~v~~~~~~----~~~~--~l~~~~~d~~i~-vw~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 85 (228)
...+.|+.+ ++++ .+..|+.+|.|. +.....+. .+...... ....+|..|.++++.+.|+.++.
T Consensus 412 ~~lT~IaVd~v~~~~g~ytVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~--~~~~pI~~L~ld~~~~~LYV~t~ 489 (667)
T 4gz8_A 412 YQFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVF--REPTTISAMELSTKQQQLYIGST 489 (667)
T ss_dssp CCEEEEEEEEEECSSCEEEEEEEEETTSEEEEEEEEC------CEEEEEEEEECS--SSCCCCCEEEEETTTTEEEEEBS
T ss_pred cceeEEEEEEEecCCCcEEEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeec--CCCceeeeEEEcCCCCEEEEEEC
Confidence 345666663 2343 466899999875 32222111 11111111 11567899999999999999998
Q ss_pred CCeEEE
Q 040370 86 DGAIRL 91 (228)
Q Consensus 86 dg~v~i 91 (228)
++.++|
T Consensus 490 ~~V~kV 495 (667)
T 4gz8_A 490 AGVAQL 495 (667)
T ss_dssp SCEEEE
T ss_pred CEEEEE
Confidence 887666
No 395
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=31.30 E-value=1.6e+02 Score=21.84 Aligned_cols=75 Identities=12% Similarity=0.142 Sum_probs=45.2
Q ss_pred cCcceEEEEEeC---CCCEEEEecCCCeEEEEEcccceE-----EeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370 18 DTHNVRSVSFHP---SGDFLLAGTDHPIAHLYDVNTFQC-----YLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI 89 (228)
Q Consensus 18 ~~~~v~~~~~~~---~~~~l~~~~~d~~i~vw~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 89 (228)
....|.++..-+ +..+|+.++..|.++.-.+..... +....... ...+..+........++..+.+|.+
T Consensus 97 ~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~---~d~lv~v~~~~~~~~i~l~T~~G~~ 173 (370)
T 3l6v_A 97 SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE---GDALVGVALTDGDRDVLLFASNGKT 173 (370)
T ss_dssp TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT---TCCEEEEEEECSCCEEEEEETTSEE
T ss_pred CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC---CCEEEEEEEeCCCceEEEEeCCCeE
Confidence 345566654432 456899999999999998765432 11111111 3344444444445567778888888
Q ss_pred EEEeCC
Q 040370 90 RLWDGV 95 (228)
Q Consensus 90 ~iwd~~ 95 (228)
..++..
T Consensus 174 irf~~~ 179 (370)
T 3l6v_A 174 VRFGES 179 (370)
T ss_dssp EEEEGG
T ss_pred EEEEcc
Confidence 888653
No 396
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=29.04 E-value=2.4e+02 Score=23.05 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=36.9
Q ss_pred eEEEEecCCeEEEE-eCCCCc-eeeEEecccccceeEEEEECCCC--CEEEEeeCCCeEEE
Q 040370 79 MYVTASKDGAIRLW-DGVSAN-CVRSIVGAHGTAEATSANFTKDQ--RFVLSCGKDSTVKL 135 (228)
Q Consensus 79 ~l~~~~~dg~v~iw-d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~~ 135 (228)
.++.|..+|.|.=. ...... .+..+.......+|..+.++++. .+|+.++.++.+++
T Consensus 417 V~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 67788888876433 333322 22223222225678889999987 89999988877666
No 397
>1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10
Probab=28.24 E-value=1.1e+02 Score=20.25 Aligned_cols=35 Identities=9% Similarity=0.156 Sum_probs=21.4
Q ss_pred eeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeE
Q 040370 156 RFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVA 190 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~ 190 (228)
...+.|...+..-+++...++++.+||.+-|+...
T Consensus 121 llsl~f~~g~aHaia~S~~g~~~tlFDPN~GEF~v 155 (188)
T 1ukf_A 121 LLSLRFANVQGHAIACSCEGSQFKLFDPNLGEFQS 155 (188)
T ss_dssp EEEEEETTTEEEEEEEEEETTEEEEEETTTEEEEE
T ss_pred EEEEEecCCCceeEEeccCCCeEEEeCCCCceeec
Confidence 33445554444444444457999999998776543
No 398
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=26.18 E-value=2e+02 Score=21.23 Aligned_cols=112 Identities=13% Similarity=0.069 Sum_probs=58.2
Q ss_pred eEEEEEeCCCCEEEEecCCCeEEEEEcccce---------EEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEE
Q 040370 22 VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ---------CYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLW 92 (228)
Q Consensus 22 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw 92 (228)
|..++- .....+.-..||.|..|-....- ........... ...+..++.+....+.+.-..||.|..|
T Consensus 55 i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~-~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 55 PVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQ-HVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGT-TSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred eEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEccccc-CCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 444433 33445555678888888643211 00111111000 2344556676666677777889999999
Q ss_pred eCCCC-----------ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEcc
Q 040370 93 DGVSA-----------NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVS 139 (228)
Q Consensus 93 d~~~~-----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~ 139 (228)
-.... .....+... ....|..++.. ....+.-..+|.|+.|-..
T Consensus 132 G~n~~GqLG~g~~~~~~~p~~v~~l-~~~~i~~va~G--~~hs~alt~~G~v~~wG~n 186 (389)
T 3kci_A 132 GEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAG--GAHSACVTAAGDLYTWGKG 186 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGG-TTSCEEEEEEC--SSEEEEEETTSCEEEEECC
T ss_pred eCCCCCcCCCCCCccCcCCeEeccc-CCCeEEEEEeC--cCeEEEEeCCCeEEEeCCC
Confidence 54321 011111111 12245555544 3445556678999999753
No 399
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=24.79 E-value=2.4e+02 Score=23.12 Aligned_cols=70 Identities=14% Similarity=0.079 Sum_probs=42.6
Q ss_pred cceEEEEEeCC--CCEEEEecCCCeEEEEEcccc----eEEeeeccceeeeccce-eeEEeCCCCCeEEEEecCCeEEE
Q 040370 20 HNVRSVSFHPS--GDFLLAGTDHPIAHLYDVNTF----QCYLSANVPEISVNGAI-NQVRYSSTGGMYVTASKDGAIRL 91 (228)
Q Consensus 20 ~~v~~~~~~~~--~~~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~v~i 91 (228)
...++++.... -..+..|+.+|.|.-.-+... .....+.... . ..+| ..+.++++...|+.++.++.+++
T Consensus 399 ~~lT~VaV~~~~~~tVlFLGT~~G~l~Kv~~~~~~~~~~~~ee~~v~~-~-~~pI~~~l~l~~~~~~Lyv~s~~~V~qv 475 (681)
T 3oky_A 399 DRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFK-D-GSPILRDMAFSINQLYLYVMSERQVTRV 475 (681)
T ss_dssp SCBCCCEEEEETTEEEEEEEBTTSEEEEEECCCTTTCCEEEEEEECCT-T-CCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred cceEEEEEEecCceEEEEEECCCceEEEEEECCCCCceEEEEEeeecc-C-CCceeeeeEEcCCCCEEEEEecCEEEEE
Confidence 34566666553 345668999998875444321 1222221111 1 4566 68999998888999888877766
No 400
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=24.41 E-value=2.7e+02 Score=22.21 Aligned_cols=73 Identities=11% Similarity=0.057 Sum_probs=43.3
Q ss_pred cceEEEEEeC----C--CCEEEEecCCCeEE-EEEcccc-------eEEeeecccee-------eeccceeeEEeCCCCC
Q 040370 20 HNVRSVSFHP----S--GDFLLAGTDHPIAH-LYDVNTF-------QCYLSANVPEI-------SVNGAINQVRYSSTGG 78 (228)
Q Consensus 20 ~~v~~~~~~~----~--~~~l~~~~~d~~i~-vw~~~~~-------~~~~~~~~~~~-------~~~~~i~~~~~~~~~~ 78 (228)
...+.|+... + -..+..|+.+|.|. +...... ..+........ ....+|..+.++++..
T Consensus 403 y~lT~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI~~L~ls~~~~ 482 (565)
T 3oky_B 403 YRLTKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGMQLDRASG 482 (565)
T ss_dssp SCEEEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCCCEEEEEGGGT
T ss_pred cceEEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCceEEEEEcCCCC
Confidence 3568888765 2 24566899999875 3332211 11111111110 0135788999999888
Q ss_pred eEEEEecCCeEEEE
Q 040370 79 MYVTASKDGAIRLW 92 (228)
Q Consensus 79 ~l~~~~~dg~v~iw 92 (228)
.|+.++.++.+++-
T Consensus 483 ~LYV~s~~~V~qVP 496 (565)
T 3oky_B 483 SLYVAFSTCVIKVP 496 (565)
T ss_dssp EEEEECSSCEEEEE
T ss_pred EEEEEecCeEEEee
Confidence 99999888877763
No 401
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=22.96 E-value=2.2e+02 Score=20.59 Aligned_cols=160 Identities=10% Similarity=0.061 Sum_probs=80.2
Q ss_pred cceEEEEEeCCCCEEEEecCCCeEEEEEccc---------ceEEeeeccceeeeccceeeE-EeCC--CCCeEEEEecCC
Q 040370 20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNT---------FQCYLSANVPEISVNGAINQV-RYSS--TGGMYVTASKDG 87 (228)
Q Consensus 20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~---------~~~~~~~~~~~~~~~~~i~~~-~~~~--~~~~l~~~~~dg 87 (228)
+.+..+......+.|+..+..|.+.-..... |.++... ........|..+ ...+ ++.+++.++.+|
T Consensus 39 D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~--i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G 116 (323)
T 1wp5_A 39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANI--IPIDRDEEIIKAIPINDFELNGYFLFVTRNG 116 (323)
T ss_dssp CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGT--SCCCTTCCEEEEEEESCTTSSCEEEEEETTS
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhc--cCCCCCCEEEEEEEecccCCCceEEEEeCCC
Confidence 3444444444556666677777765554422 2211111 001113345544 3332 256789999999
Q ss_pred eEEEEeCCCCc------eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee-------EEEEecceeee
Q 040370 88 AIRLWDGVSAN------CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL-------VKQYLGATHTQ 154 (228)
Q Consensus 88 ~v~iwd~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-------~~~~~~~~~~~ 154 (228)
.++--.+..-. -+..+.... ...+..+........++..+.+|.+..+....-.. +..+... ...
T Consensus 117 ~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d 194 (323)
T 1wp5_A 117 MVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGD 194 (323)
T ss_dssp EEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTC
T ss_pred eEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCC
Confidence 99998764221 122222222 34455554444556678888899888888753211 1111111 122
Q ss_pred eeeEE-EECCCCcEEEEeeCCCCeEEEEEcC
Q 040370 155 LRFQA-VFNDTEEFVLSIDEPSNEIVIWDAL 184 (228)
Q Consensus 155 ~~~~~-~~~~~~~~~~~~~~~d~~i~i~d~~ 184 (228)
.+..+ ...++...++.... .|..+..++.
T Consensus 195 ~Vv~~~~~~~~~~~ll~vt~-~G~gKr~~~~ 224 (323)
T 1wp5_A 195 YIVSGQLITSKDESIVVATQ-RGAVKKMKLT 224 (323)
T ss_dssp CEEEEEEECCTTCEEEEEET-TSEEEEEEGG
T ss_pred EEEEEEEEcCCCcEEEEEEC-CCceEEEEHH
Confidence 23333 33333314555444 4777777664
No 402
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=21.94 E-value=1.1e+02 Score=17.57 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=15.9
Q ss_pred CeEEEEEcccceEEeeeccc
Q 040370 41 PIAHLYDVNTFQCYLSANVP 60 (228)
Q Consensus 41 ~~i~vw~~~~~~~~~~~~~~ 60 (228)
-.|.|||+.+|....++..+
T Consensus 18 E~V~IvNvnNG~Rf~TYvI~ 37 (96)
T 1vc3_B 18 EQVDIYDITNGARLTTYALP 37 (96)
T ss_dssp CEEEEEETTTCCEEEEECEE
T ss_pred CEEEEEECCCCceEEEEEEE
Confidence 47899999999887776554
No 403
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=20.38 E-value=3.3e+02 Score=21.73 Aligned_cols=27 Identities=4% Similarity=0.054 Sum_probs=21.7
Q ss_pred cceeEEEEECCCCCEEEEeeCCCeEEE
Q 040370 109 TAEATSANFTKDQRFVLSCGKDSTVKL 135 (228)
Q Consensus 109 ~~~i~~~~~~~~~~~l~~~~~d~~i~~ 135 (228)
..+|..+.++++...|+.++.++.+++
T Consensus 469 ~~pI~~L~ls~~~~~LYV~s~~~V~qV 495 (565)
T 3oky_B 469 DKRIMGMQLDRASGSLYVAFSTCVIKV 495 (565)
T ss_dssp CCCCCEEEEEGGGTEEEEECSSCEEEE
T ss_pred CCceEEEEEcCCCCEEEEEecCeEEEe
Confidence 356788999998889999888876665
Done!