BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040371
         (410 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224122234|ref|XP_002318784.1| predicted protein [Populus trichocarpa]
 gi|222859457|gb|EEE97004.1| predicted protein [Populus trichocarpa]
          Length = 511

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/410 (76%), Positives = 356/410 (86%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVV+WN+MIGG+VR ARF+EALR FR M  S VEPDK+TFASVI GCA+LGAL HA
Sbjct: 102 MRARDVVTWNTMIGGYVRKARFEEALRLFRFMNKSNVEPDKYTFASVINGCAKLGALKHA 161

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH L+IEK+IELNFILS+ALIDMYSKCGKIQ AKE+FD VQRN+V +WNAMISG+A+H
Sbjct: 162 QWVHELLIEKRIELNFILSSALIDMYSKCGKIQTAKEIFDGVQRNNVCIWNAMISGLAVH 221

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GLA DA  +FTKME+ NVLPD+ITFLG+LTACSHCGLV+EGRKYFD MRSRYS+QP +EH
Sbjct: 222 GLALDAIKVFTKMEVENVLPDAITFLGILTACSHCGLVKEGRKYFDLMRSRYSVQPHIEH 281

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YGAMVDLLGRAG +EEA+ +I SM MEPDVV+WRALL ACRT+K+ ELGE A+ NISRL 
Sbjct: 282 YGAMVDLLGRAGLLEEAFAMIKSMPMEPDVVIWRALLGACRTYKKPELGEAAMANISRLR 341

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            GDYVLLSN+YC  KRWDTA+ V E+MKKKGV K +GKS  E AG +H FKAGDRSHPE 
Sbjct: 342 SGDYVLLSNIYCSQKRWDTAQGVWEMMKKKGVHKVRGKSCFEWAGFLHPFKAGDRSHPET 401

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           +AI K+L  LIQRTK  G++P T+LV MDVSEEEKEGNLYHHSEKLALAYGILKT+ G E
Sbjct: 402 EAIYKMLEGLIQRTKLAGYVPTTDLVTMDVSEEEKEGNLYHHSEKLALAYGILKTTSGAE 461

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           +RISKNLRIC+DCHSWIK++SRLL RVIIVRDRIRFHRFE GLCSCGDYW
Sbjct: 462 VRISKNLRICYDCHSWIKIVSRLLSRVIIVRDRIRFHRFENGLCSCGDYW 511



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 17/170 (10%)

Query: 72  IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFT 131
           +ELN I     ID   +    ++AK VF+ ++  DV  WN MI G        +A  +F 
Sbjct: 77  VELNLI-----IDKLMRTENYRVAKMVFNKMRARDVVTWNTMIGGYVRKARFEEALRLFR 131

Query: 132 KMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRA 191
            M   NV PD  TF  ++  C+  G ++   ++   +     I+       A++D+  + 
Sbjct: 132 FMNKSNVEPDKYTFASVINGCAKLGALKHA-QWVHELLIEKRIELNFILSSALIDMYSKC 190

Query: 192 GHIEEAYGLITSMTMEPDVVVWRALLS----------ACRTFKRLELGEV 231
           G I+ A  +   +    +V +W A++S          A + F ++E+  V
Sbjct: 191 GKIQTAKEIFDGV-QRNNVCIWNAMISGLAVHGLALDAIKVFTKMEVENV 239


>gi|147860852|emb|CAN83162.1| hypothetical protein VITISV_022557 [Vitis vinifera]
          Length = 562

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/410 (74%), Positives = 358/410 (87%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVV+WNSMIGG VRN RF+EALRFFREML+S VEPD FTFASVI GCARLG+ +HA
Sbjct: 153 MLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHA 212

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH L+IEKKI+LNFILS+ALID+YSKCG+I  AK+VF+++Q +DVSVWN+MI+G+AIH
Sbjct: 213 ELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIH 272

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GLA DA  +F++MEM +V PDSITF+G+LTACSHCGLVE+GR+YFD MR  YSIQPQLEH
Sbjct: 273 GLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEH 332

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YGAMVDLLGRAG +EEAY +I +M MEPD+V+WRALLSACR FK  ELGEVAI  IS L 
Sbjct: 333 YGAMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALLSACRNFKNPELGEVAIAKISHLN 392

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            GDY+LLSNMYC L++WD+AE VRE+MK+ GVRK++G+SW+EL GVIHQFKAGDRSHPE 
Sbjct: 393 SGDYILLSNMYCSLEKWDSAERVREMMKRDGVRKNRGRSWVELGGVIHQFKAGDRSHPET 452

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
            AI K+L  LI+RTK EGF+PAT+LVLMDVS+EE+E NL  HSEKLALAY ILKTSPGTE
Sbjct: 453 GAIYKVLEGLIRRTKLEGFMPATDLVLMDVSDEEREENLNSHSEKLALAYVILKTSPGTE 512

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IR+SKNLR CHDCH W+K++SRLL RVIIVRDRIRFH+FEGGLCSC DYW
Sbjct: 513 IRVSKNLRTCHDCHCWMKILSRLLSRVIIVRDRIRFHQFEGGLCSCRDYW 562



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 22/187 (11%)

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           YW  +LI       N I+++ +     K G+   AK VF  + R DV  WN+MI G   +
Sbjct: 122 YWGFDLITA-----NLIIASLM-----KVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRN 171

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A   F +M   NV PD  TF  ++  C+  G           M  +  IQ     
Sbjct: 172 ERFEEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEK-KIQLNFIL 230

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRAL----------LSACRTFKRLELGE 230
             A++DL  + G I  A  +  S+  + DV VW ++          L A   F ++E+  
Sbjct: 231 SSALIDLYSKCGRINTAKKVFNSIQHD-DVSVWNSMINGLAIHGLALDAIGVFSQMEMES 289

Query: 231 VAIVNIS 237
           V+  +I+
Sbjct: 290 VSPDSIT 296


>gi|225456505|ref|XP_002280974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50990
           [Vitis vinifera]
          Length = 523

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/410 (74%), Positives = 358/410 (87%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVV+WNSMIGG VRN RF+EALRFFREML+S VEPD FTFASVI GCARLG+ +HA
Sbjct: 114 MLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHA 173

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH L+IEKKI+LNFILS+ALID+YSKCG+I  AK+VF+++Q +DVSVWN+MI+G+AIH
Sbjct: 174 ELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIH 233

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GLA DA  +F++MEM +V PDSITF+G+LTACSHCGLVE+GR+YFD MR  YSIQPQLEH
Sbjct: 234 GLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEH 293

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YGAMVDLLGRAG +EEAY +I +M MEPD+V+WRALLSACR FK  ELGEVAI  IS L 
Sbjct: 294 YGAMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALLSACRNFKNPELGEVAIAKISHLN 353

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            GDY+LLSNMYC L++WD+AE VRE+MK+ GVRK++G+SW+EL GVIHQFKAGDRSHPE 
Sbjct: 354 SGDYILLSNMYCSLEKWDSAERVREMMKRDGVRKNRGRSWVELGGVIHQFKAGDRSHPET 413

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
            AI K+L  LI+RTK EGF+PAT+LVLMDVS+EE+E NL  HSEKLALAY ILKTSPGTE
Sbjct: 414 GAIYKVLEGLIRRTKLEGFMPATDLVLMDVSDEEREENLNSHSEKLALAYVILKTSPGTE 473

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IR+SKNLR CHDCH W+K++SRLL RVIIVRDRIRFH+FEGGLCSC DYW
Sbjct: 474 IRVSKNLRTCHDCHCWMKILSRLLSRVIIVRDRIRFHQFEGGLCSCRDYW 523



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 22/187 (11%)

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           YW  +LI       N I+++ +     K G+   AK VF  + R DV  WN+MI G   +
Sbjct: 83  YWGFDLITA-----NLIIASLM-----KVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRN 132

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A   F +M   NV PD  TF  ++  C+  G           M  +  IQ     
Sbjct: 133 ERFEEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEK-KIQLNFIL 191

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRAL----------LSACRTFKRLELGE 230
             A++DL  + G I  A  +  S+  + DV VW ++          L A   F ++E+  
Sbjct: 192 SSALIDLYSKCGRINTAKKVFNSIQHD-DVSVWNSMINGLAIHGLALDAIGVFSQMEMES 250

Query: 231 VAIVNIS 237
           V+  +I+
Sbjct: 251 VSPDSIT 257


>gi|317106614|dbj|BAJ53121.1| JHL07K02.11 [Jatropha curcas]
          Length = 514

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/410 (74%), Positives = 361/410 (88%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPD+DVV+WNSMIGG+VRN +F+EALR F+ MLSS VEPDKFTFASVI  CARLGALNHA
Sbjct: 105 MPDRDVVTWNSMIGGYVRNGKFEEALRSFQAMLSSNVEPDKFTFASVITACARLGALNHA 164

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H+L+++K+IE+NFILS+ALIDMYSKCG+I+ AKEVF++V+RNDVSVWN++I+G+A+H
Sbjct: 165 QWLHDLMVQKRIEVNFILSSALIDMYSKCGRIETAKEVFESVERNDVSVWNSLINGLAVH 224

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GLA DA  +F+KME  NVLPDS+TFLG+L ACSHCGLV+EGRKYFD M + YSI+PQLEH
Sbjct: 225 GLALDAMMVFSKMEAENVLPDSLTFLGILKACSHCGLVKEGRKYFDLMENYYSIKPQLEH 284

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YGAMVDLLGRAG ++EAY +IT+M MEPDV+VWR LLSACRT +  ELGEVA+ NIS   
Sbjct: 285 YGAMVDLLGRAGLLDEAYAMITAMPMEPDVIVWRILLSACRTHRNTELGEVAVANISGPK 344

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            GDYVLLSN+YC   RWD A+ VRE+MK++GVRK +GKSW E   V+H+F+AGD+SHPE 
Sbjct: 345 SGDYVLLSNIYCSQNRWDNAQEVREMMKEEGVRKRRGKSWFEWEDVVHRFRAGDKSHPET 404

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           +A+ KIL  LIQRTK EGF+P+TELV+MDVSEEEKE NLYHHSEKLALAYGILKTSPGTE
Sbjct: 405 EALYKILEGLIQRTKLEGFVPSTELVMMDVSEEEKEENLYHHSEKLALAYGILKTSPGTE 464

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IRI KNLRIC+DCH+WIKM+S LL RVII+RDRIRFHRFEGG CSCGDYW
Sbjct: 465 IRIYKNLRICYDCHNWIKMVSGLLSRVIIIRDRIRFHRFEGGSCSCGDYW 514



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 4/175 (2%)

Query: 45  ASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR 104
           AS+I        LN AY V   +    + L  +    +ID + + G+ ++AK+VF  +  
Sbjct: 50  ASLISTYVNCNQLNLAYQVIRQVFSWTVSLAGL--NLVIDSFMRIGEYEIAKKVFCKMPD 107

Query: 105 NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKY 164
            DV  WN+MI G   +G   +A   F  M   NV PD  TF  ++TAC+  G +   +  
Sbjct: 108 RDVVTWNSMIGGYVRNGKFEEALRSFQAMLSSNVEPDKFTFASVITACARLGALNHAQWL 167

Query: 165 FDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            D M  +  I+       A++D+  + G IE A  +  S+    DV VW +L++ 
Sbjct: 168 HDLMVQK-RIEVNFILSSALIDMYSKCGRIETAKEVFESVE-RNDVSVWNSLING 220


>gi|356532565|ref|XP_003534842.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g50990-like [Glycine max]
          Length = 569

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 288/410 (70%), Positives = 346/410 (84%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVV+WNSMIGG+VRN RF +AL  FR MLS+KVEPD FTFASV+  CARLGAL +A
Sbjct: 160 MSVRDVVTWNSMIGGYVRNLRFFDALSIFRRMLSAKVEPDGFTFASVVTACARLGALGNA 219

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH L++EK++ELN+ILSAALIDMY+KCG+I ++++VF+ V R+ VSVWNAMISG+AIH
Sbjct: 220 KWVHGLMVEKRVELNYILSAALIDMYAKCGRIDVSRQVFEEVARDHVSVWNAMISGLAIH 279

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GLA DA+ +F++MEM +VLPDSITF+G+LTACSHCGLVEEGRKYF  M++R+ IQPQLEH
Sbjct: 280 GLAMDATLVFSRMEMEHVLPDSITFIGILTACSHCGLVEEGRKYFGMMQNRFMIQPQLEH 339

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG MVDLLGRAG +EEAY +I  M MEPD+V+WRALLSACR  ++ ELGEVAI NISRL 
Sbjct: 340 YGTMVDLLGRAGLMEEAYAVIKEMRMEPDIVIWRALLSACRIHRKKELGEVAIANISRLE 399

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            GD+VLLSNMYC L  WD AE VR +MK +GVRKS+GKSW+EL   IHQF A  +SHPE 
Sbjct: 400 SGDFVLLSNMYCSLNNWDGAERVRRMMKTRGVRKSRGKSWVELGDGIHQFNAAYQSHPEM 459

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           ++I ++L  LIQR K EGF P T+LVLMDVSEEEKE NL  HSEKLA+AY +LKTSPGT+
Sbjct: 460 KSIYRVLEGLIQRAKLEGFTPLTDLVLMDVSEEEKEENLMFHSEKLAMAYAVLKTSPGTK 519

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IRISKNLRIC DCH+WIK++S++L R IIVRDRIRFH+FEGG+CSC DYW
Sbjct: 520 IRISKNLRICLDCHNWIKIVSKILNRKIIVRDRIRFHQFEGGVCSCKDYW 569



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 12/160 (7%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
           +I+   K G+  +AK+VF  +   DV  WN+MI G   +    DA +IF +M    V PD
Sbjct: 140 VIESLVKGGQCDIAKKVFGKMSVRDVVTWNSMIGGYVRNLRFFDALSIFRRMLSAKVEPD 199

Query: 142 SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
             TF  ++TAC+  G +    K+   +     ++       A++D+  + G I+ +  + 
Sbjct: 200 GFTFASVVTACARLGALGNA-KWVHGLMVEKRVELNYILSAALIDMYAKCGRIDVSRQVF 258

Query: 202 TSMTMEPDVVVWRALLS----------ACRTFKRLELGEV 231
             +  +  V VW A++S          A   F R+E+  V
Sbjct: 259 EEVARD-HVSVWNAMISGLAIHGLAMDATLVFSRMEMEHV 297


>gi|449449673|ref|XP_004142589.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g50990-like [Cucumis sativus]
          Length = 628

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 264/410 (64%), Positives = 332/410 (80%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVV+WNS+IGG V+NAR+DEA RFFR+ML+S ++PD FTFAS++  CA+LGA ++ 
Sbjct: 219 MPFRDVVTWNSIIGGCVKNARYDEAFRFFRQMLTSNIQPDGFTFASILNACAQLGAPSNT 278

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           +WVH  + +KKIELN +L+ ALID YSKCG IQ+AKE+F  +  +D SVWN MI G+AIH
Sbjct: 279 HWVHAQMTQKKIELNSLLTCALIDAYSKCGSIQIAKEIFSNIPHSDTSVWNVMIKGLAIH 338

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GLA DA ++F +ME  +VLPD+ITFLG+LTAC+H  L++ GR+YF+ M+S YSIQPQLEH
Sbjct: 339 GLAMDALSLFLRMEHESVLPDAITFLGVLTACNHGCLIDHGRRYFELMKSHYSIQPQLEH 398

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG MVDL  RAG +EEAY LI +M +EPDVV WR LLS CR +K  +L EVAI N+S+  
Sbjct: 399 YGVMVDLYSRAGFLEEAYSLIVTMPIEPDVVTWRTLLSGCRIYKNHKLAEVAIANMSQRK 458

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            GDYVLLSN+YC L RW  AE VR++MK   VRK +GKSW+EL G I  FK+GDR HPE+
Sbjct: 459 SGDYVLLSNIYCSLNRWKEAETVRKMMKINRVRKKRGKSWIELGGTIQHFKSGDRLHPES 518

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
            AI+K+L SL++RT++EG++P TELV MD+SEEEKE NL  HSEK+ALAY ILKTSPG +
Sbjct: 519 DAIEKVLCSLMKRTRTEGYMPVTELVFMDISEEEKEENLSFHSEKMALAYAILKTSPGAK 578

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           I ISKNLRIC DCH+WIK++SR+L RVI+VRDRIRFH+FEGG+CSCGD W
Sbjct: 579 ISISKNLRICDDCHTWIKLVSRVLCRVIVVRDRIRFHQFEGGMCSCGDRW 628



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 4/173 (2%)

Query: 45  ASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR 104
           AS++    R+G LN  + + +++  K+++L  +    LI  + K G+ + AK+VF  +  
Sbjct: 164 ASLVSTYQRVGCLNRVHQLLDILCSKQLDL--VAMNLLIGNFMKIGECKFAKKVFYKMPF 221

Query: 105 NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKY 164
            DV  WN++I G   +    +A   F +M   N+ PD  TF  +L AC+  G        
Sbjct: 222 RDVVTWNSIIGGCVKNARYDEAFRFFRQMLTSNIQPDGFTFASILNACAQLGAPSNTHWV 281

Query: 165 FDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              M  +  I+       A++D   + G I+ A  + +++    D  VW  ++
Sbjct: 282 HAQMTQK-KIELNSLLTCALIDAYSKCGSIQIAKEIFSNIP-HSDTSVWNVMI 332


>gi|387169524|gb|AFJ66185.1| hypothetical protein 11M19.3 [Arabidopsis halleri]
          Length = 511

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 268/409 (65%), Positives = 343/409 (83%), Gaps = 1/409 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAY 61
           D++V++WN MIGG+VRN +++EAL+  + MLS S ++P+KF+FAS +  CARLG L+HA 
Sbjct: 103 DQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDIKPNKFSFASSLAACARLGDLHHAK 162

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           WVH+L+I+  IELN ILS+AL+D+Y+KCG I+ ++EVF +V+RNDVS+WNAMI+G A HG
Sbjct: 163 WVHSLMIDAGIELNAILSSALVDVYAKCGDIETSREVFYSVKRNDVSIWNAMITGFATHG 222

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
           LA +A  +F++ME  +V PDSITFLGLLTACSHCGL+ +G+ YFD M  R+SIQP+LEHY
Sbjct: 223 LATEAIRVFSEMEAEHVSPDSITFLGLLTACSHCGLLGKGKVYFDIMSQRFSIQPKLEHY 282

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
           GAMVDLLGRAG ++EAY LI SM +EPDVV+WR+LLS+ RT+K  ELGE+AI N+S+   
Sbjct: 283 GAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLLSSSRTYKNPELGEIAIQNLSKAKS 342

Query: 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
           GDYVLLSN+Y   K+W++A+ VRE+M K+G+RK++GKSW+E  GVIH+FKAGD SH E +
Sbjct: 343 GDYVLLSNIYSTTKKWESAQKVRELMTKEGIRKAKGKSWVEYGGVIHRFKAGDTSHIEIK 402

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
           AI K+L  LIQ+TKSEGF+  T+LVLMDVSEEEKE NL +HSEKLALAY ILK+SPGTEI
Sbjct: 403 AIYKVLEGLIQKTKSEGFVSDTDLVLMDVSEEEKEENLNYHSEKLALAYVILKSSPGTEI 462

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           RI KN+R+C DCH+WIK +S+LL RVII+RDRIRFHRFE GLCSC DYW
Sbjct: 463 RIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRFEDGLCSCKDYW 511



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 13/169 (7%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMF-NVLP 140
           +I+   K G+  +AK+V       +V  WN MI G   +    +A      M  F ++ P
Sbjct: 81  IIESLMKIGESSLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDIKP 140

Query: 141 DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL 200
           +  +F   L AC+  G +    K+   +     I+       A+VD+  + G IE +  +
Sbjct: 141 NKFSFASSLAACARLGDLHHA-KWVHSLMIDAGIELNAILSSALVDVYAKCGDIETSREV 199

Query: 201 ITSMTMEPDVVVWRALLS----------ACRTFKRLELGEVAIVNISRL 239
             S+    DV +W A+++          A R F  +E   V+  +I+ L
Sbjct: 200 FYSVK-RNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFL 247


>gi|297792411|ref|XP_002864090.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297309925|gb|EFH40349.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 534

 Score =  579 bits (1492), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 268/409 (65%), Positives = 341/409 (83%), Gaps = 1/409 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAY 61
           D++V++WN MIGG+VRN +++EAL+  + MLS S  +P+KF+FAS +  CARLG L+HA 
Sbjct: 126 DQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDFKPNKFSFASSLAACARLGDLHHAK 185

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           WVH+L+I+  IE N ILS+AL+D+Y+KCG I+ ++EVF +V+RNDVS+WNAMI+G A HG
Sbjct: 186 WVHSLMIDGGIEFNAILSSALVDVYAKCGDIETSREVFCSVKRNDVSIWNAMITGFATHG 245

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
           LA +A  +F++ME  +V PDSITFLGLLTACSHCGL+EEG++YF  M  R+SIQP+LEHY
Sbjct: 246 LATEAIRVFSEMEAEHVSPDSITFLGLLTACSHCGLLEEGKEYFGLMSRRFSIQPKLEHY 305

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
           GAMVDLLGRAG ++EAY LI SM +EPDVV+WR+LLS+ RTFK  ELGE+AI N+S+   
Sbjct: 306 GAMVDLLGRAGQVKEAYELIESMPIEPDVVIWRSLLSSSRTFKNPELGEIAIQNLSKAKS 365

Query: 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
           GDYVLLSN+Y   K+W++A+ VRE+M K+G+RK++GKSW+E  GVIH+FKAGD SH E +
Sbjct: 366 GDYVLLSNIYSSTKKWESAQKVRELMTKEGIRKAKGKSWVEFGGVIHRFKAGDTSHIETK 425

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
           AI K+L  LIQ+TKSEGF+  T+LVLMDVSEEEKE NL +HSEKLALAY ILK+SPGTEI
Sbjct: 426 AIYKVLEGLIQKTKSEGFVSDTDLVLMDVSEEEKEENLNYHSEKLALAYVILKSSPGTEI 485

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           RI KN+R+C DCH+WIK +S+LL RVI +RDRIRFHRFE GLCSC DYW
Sbjct: 486 RIQKNIRMCSDCHNWIKAVSKLLNRVITMRDRIRFHRFEDGLCSCKDYW 534



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 13/169 (7%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMF-NVLP 140
           +I+   K G+  +AK+V       +V  WN MI G   +    +A      M  F +  P
Sbjct: 104 IIESLVKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDFKP 163

Query: 141 DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL 200
           +  +F   L AC+  G +    K+   +     I+       A+VD+  + G IE +  +
Sbjct: 164 NKFSFASSLAACARLGDLHHA-KWVHSLMIDGGIEFNAILSSALVDVYAKCGDIETSREV 222

Query: 201 ITSMTMEPDVVVWRALLS----------ACRTFKRLELGEVAIVNISRL 239
             S+    DV +W A+++          A R F  +E   V+  +I+ L
Sbjct: 223 FCSVK-RNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFL 270


>gi|9758246|dbj|BAB08745.1| unnamed protein product [Arabidopsis thaliana]
          Length = 511

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 266/409 (65%), Positives = 342/409 (83%), Gaps = 1/409 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAY 61
           D++V++WN MIGG+VRN +++EAL+  + MLS + ++P+KF+FAS +  CARLG L+HA 
Sbjct: 103 DQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKPNKFSFASSLAACARLGDLHHAK 162

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           WVH+L+I+  IELN ILS+AL+D+Y+KCG I  ++EVF +V+RNDVS+WNAMI+G A HG
Sbjct: 163 WVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWNAMITGFATHG 222

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
           LA +A  +F++ME  +V PDSITFLGLLT CSHCGL+EEG++YF  M  R+SIQP+LEHY
Sbjct: 223 LATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRRFSIQPKLEHY 282

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
           GAMVDLLGRAG ++EAY LI SM +EPDVV+WR+LLS+ RT+K  ELGE+AI N+S+   
Sbjct: 283 GAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLLSSSRTYKNPELGEIAIQNLSKAKS 342

Query: 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
           GDYVLLSN+Y   K+W++A+ VRE+M K+G+RK++GKSWLE  G+IH+FKAGD SH E +
Sbjct: 343 GDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKAKGKSWLEFGGMIHRFKAGDTSHIETK 402

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
           AI K+L  LIQ+TKS+GF+  T+LVLMDVSEEEKE NL +HSEKLALAY ILK+SPGTEI
Sbjct: 403 AIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEEEKEENLNYHSEKLALAYVILKSSPGTEI 462

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           RI KN+R+C DCH+WIK +S+LL RVII+RDRIRFHRFE GLCSC DYW
Sbjct: 463 RIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRFEDGLCSCRDYW 511



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 13/169 (7%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMF-NVLP 140
           +I+   K G+  +AK+V       +V  WN MI G   +    +A      M  F ++ P
Sbjct: 81  IIESLMKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKP 140

Query: 141 DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL 200
           +  +F   L AC+  G +    K+   +     I+       A+VD+  + G I  +  +
Sbjct: 141 NKFSFASSLAACARLGDLHHA-KWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREV 199

Query: 201 ITSMTMEPDVVVWRALLS----------ACRTFKRLELGEVAIVNISRL 239
             S+    DV +W A+++          A R F  +E   V+  +I+ L
Sbjct: 200 FYSVK-RNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFL 247


>gi|145359106|ref|NP_199912.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635749|sp|Q9FI49.2|PP428_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g50990
 gi|332008636|gb|AED96019.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 534

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 266/409 (65%), Positives = 342/409 (83%), Gaps = 1/409 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAY 61
           D++V++WN MIGG+VRN +++EAL+  + MLS + ++P+KF+FAS +  CARLG L+HA 
Sbjct: 126 DQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKPNKFSFASSLAACARLGDLHHAK 185

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           WVH+L+I+  IELN ILS+AL+D+Y+KCG I  ++EVF +V+RNDVS+WNAMI+G A HG
Sbjct: 186 WVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWNAMITGFATHG 245

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
           LA +A  +F++ME  +V PDSITFLGLLT CSHCGL+EEG++YF  M  R+SIQP+LEHY
Sbjct: 246 LATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRRFSIQPKLEHY 305

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
           GAMVDLLGRAG ++EAY LI SM +EPDVV+WR+LLS+ RT+K  ELGE+AI N+S+   
Sbjct: 306 GAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLLSSSRTYKNPELGEIAIQNLSKAKS 365

Query: 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
           GDYVLLSN+Y   K+W++A+ VRE+M K+G+RK++GKSWLE  G+IH+FKAGD SH E +
Sbjct: 366 GDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKAKGKSWLEFGGMIHRFKAGDTSHIETK 425

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
           AI K+L  LIQ+TKS+GF+  T+LVLMDVSEEEKE NL +HSEKLALAY ILK+SPGTEI
Sbjct: 426 AIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEEEKEENLNYHSEKLALAYVILKSSPGTEI 485

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           RI KN+R+C DCH+WIK +S+LL RVII+RDRIRFHRFE GLCSC DYW
Sbjct: 486 RIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRFEDGLCSCRDYW 534



 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 13/169 (7%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMF-NVLP 140
           +I+   K G+  +AK+V       +V  WN MI G   +    +A      M  F ++ P
Sbjct: 104 IIESLMKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKP 163

Query: 141 DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL 200
           +  +F   L AC+  G +    K+   +     I+       A+VD+  + G I  +  +
Sbjct: 164 NKFSFASSLAACARLGDLHHA-KWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREV 222

Query: 201 ITSMTMEPDVVVWRALLS----------ACRTFKRLELGEVAIVNISRL 239
             S+    DV +W A+++          A R F  +E   V+  +I+ L
Sbjct: 223 FYSVK-RNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFL 270


>gi|387169573|gb|AFJ66232.1| hypothetical protein 34G24.32 [Capsella rubella]
          Length = 598

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 263/409 (64%), Positives = 341/409 (83%), Gaps = 1/409 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAY 61
           D++V++WN MIGG+VRN +++EAL+  + MLS S ++P+KF+FAS +  CARLG L+HA 
Sbjct: 190 DQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDIKPNKFSFASALAACARLGDLHHAK 249

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           WVH+L+I+  IELN ILS+AL+D+Y+KCG I+ ++EVF +V+ NDVS+WNAMI+G A HG
Sbjct: 250 WVHSLMIDAGIELNTILSSALVDVYAKCGDIETSREVFYSVKWNDVSIWNAMITGFATHG 309

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
           LA +A  +F++ME  +V PDSITFLG+LTACSHCGL+EEG+++F  M  R+SIQP+LEHY
Sbjct: 310 LATEAIRVFSEMEAEHVSPDSITFLGILTACSHCGLLEEGKEFFGLMSQRFSIQPKLEHY 369

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
           GAMVDLLGRAG ++EAY LI SM +EPDVV+WR+LLS+ RT+K  ELGE+AI N+S+   
Sbjct: 370 GAMVDLLGRAGQVKEAYDLIESMPIEPDVVIWRSLLSSARTYKNPELGEIAIQNLSKAKS 429

Query: 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
           GDYVLLSN+Y   K+W+ A+ VRE+M K+G+RK++GKSW+E  GVIH+FKAGD SH + +
Sbjct: 430 GDYVLLSNIYSSTKKWENAQKVRELMTKEGIRKAKGKSWVEFGGVIHRFKAGDTSHIDTK 489

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
           AI K+L  LIQ+ KSEGF+  T+LVLMDVSEEEKE NL +HSEKLALAY ILK+SPG+EI
Sbjct: 490 AIYKVLEGLIQKAKSEGFVSDTDLVLMDVSEEEKEENLNYHSEKLALAYVILKSSPGSEI 549

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           RI KN+R+C DCH+WIK +S+LL RVII+RDRIRFHRFE GLCSC DYW
Sbjct: 550 RIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRFEDGLCSCKDYW 598



 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 13/169 (7%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMF-NVLP 140
           +I+   K G+  +AK+V       +V  WN MI G   +    +A      M  F ++ P
Sbjct: 168 IIESLMKTGEYGLAKKVLRRASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDIKP 227

Query: 141 DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL 200
           +  +F   L AC+  G +    K+   +     I+       A+VD+  + G IE +  +
Sbjct: 228 NKFSFASALAACARLGDLHHA-KWVHSLMIDAGIELNTILSSALVDVYAKCGDIETSREV 286

Query: 201 ITSMTMEPDVVVWRALLS----------ACRTFKRLELGEVAIVNISRL 239
             S+    DV +W A+++          A R F  +E   V+  +I+ L
Sbjct: 287 FYSVKWN-DVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFL 334


>gi|413955987|gb|AFW88636.1| hypothetical protein ZEAMMB73_169634 [Zea mays]
          Length = 555

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 229/410 (55%), Positives = 305/410 (74%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD++SWNSMI G VR++   EA+  F  ++SS + PD F+F+SV+  CAR GA  + 
Sbjct: 146 MPVKDLISWNSMIAGAVRSSHLKEAMNIFSRLVSSGLVPDCFSFSSVLSACARAGARRYG 205

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH+L+ E  +E+N ILS+AL+DMY+KCG+I +A E+F+ V+ N +SVWN MISG+A H
Sbjct: 206 VWVHHLMTELGVEMNHILSSALVDMYAKCGRIDVATEIFNKVKGNHISVWNTMISGLASH 265

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL +D   +F KM+   ++PD +TF+ LLTACS CG+VEE R YF  M + YSI P++EH
Sbjct: 266 GLGSDVVILFHKMKSEELVPDGVTFVALLTACSRCGMVEEARHYFRSMTTEYSITPEVEH 325

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YGA+VD L RAG ++EAY L+ SM ++PDVV+WRALLSACR ++  +LGE  I +++   
Sbjct: 326 YGALVDTLSRAGLLDEAYELVMSMNVKPDVVIWRALLSACRRYRHTKLGEATIEHMACHG 385

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            GDY LLSN+Y    RW+ +E V +  K+K VRK++G SW+EL G  H+FKAGDRSHP+ 
Sbjct: 386 SGDYTLLSNIYSSANRWNDSEEVWKQRKQKKVRKTKGLSWVELGGSTHEFKAGDRSHPDT 445

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + I  +L  L +R K EG+ P TELV  DVSEEE+E NL  HSEKLA+AY +LKT PGTE
Sbjct: 446 EDIYVVLHGLCRRAKVEGYAPLTELVTKDVSEEEREENLTFHSEKLAVAYSVLKTGPGTE 505

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           I +SKNL++C DCH W+K+IS++L RVII+RDR+RFHRFE G CSC DYW
Sbjct: 506 IMVSKNLQVCSDCHEWMKIISKVLCRVIILRDRVRFHRFESGWCSCKDYW 555



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 2/134 (1%)

Query: 86  YSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145
           + K G++  A ++F  +   D+  WN+MI+G        +A  IF+++    ++PD  +F
Sbjct: 130 FLKSGRLDKAYQIFKRMPVKDLISWNSMIAGAVRSSHLKEAMNIFSRLVSSGLVPDCFSF 189

Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
             +L+AC+  G    G  +  H+ +   ++       A+VD+  + G I+ A  +   + 
Sbjct: 190 SSVLSACARAGARRYG-VWVHHLMTELGVEMNHILSSALVDMYAKCGRIDVATEIFNKVK 248

Query: 206 MEPDVVVWRALLSA 219
               + VW  ++S 
Sbjct: 249 GN-HISVWNTMISG 261


>gi|357119982|ref|XP_003561711.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g50990-like [Brachypodium distachyon]
          Length = 555

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 229/410 (55%), Positives = 302/410 (73%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KDVVSWNSMI G VR++   +A+  F  +++S + PD F+F+SV+  CAR GAL + 
Sbjct: 146 MPVKDVVSWNSMIAGAVRSSHLKDAMILFSRLVNSGLVPDGFSFSSVLSACARAGALFYG 205

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH L+ E  +E N IL +AL+DMY+KCG+I ++ E+F+TV+RN V +WN MI  +A H
Sbjct: 206 VWVHRLMAELGVEKNNILISALVDMYAKCGRIDVSVEIFNTVKRNHVPMWNTMIGSLAAH 265

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  D   +F +ME   V+PD +TF+ LLTACSHCG+VEE R+YF+ M ++Y I P++EH
Sbjct: 266 GLGQDVVVLFHRMEHAGVVPDGVTFVALLTACSHCGMVEEARQYFEAMTTKYYITPKVEH 325

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YGAMVD L RAG ++EAY L+ SM ++PD V+WRALLSACR   + +LGE+ I  +    
Sbjct: 326 YGAMVDTLSRAGLLDEAYNLVRSMVVKPDAVIWRALLSACRRHHQTKLGEITIEQMVCQG 385

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            GDY LLSN+Y  + RW  +ENV +  KKK VRK++G SW+EL G  H+FKAGDRSHP+ 
Sbjct: 386 SGDYTLLSNIYSSINRWVDSENVWKERKKKKVRKNKGLSWVELGGSTHEFKAGDRSHPDT 445

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
             I ++L  L ++ K+EG+ P+TELV+ DVS EE+E NL  HSEKLA+AY +LKT PGTE
Sbjct: 446 DDIYRVLHGLSKKAKAEGYSPSTELVMKDVSHEEREENLTFHSEKLAVAYSVLKTGPGTE 505

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           I +SKNL+ C DCH WIK+IS++L RVII+RDR RFHRFE G CSC DYW
Sbjct: 506 IMVSKNLQTCGDCHEWIKIISKVLCRVIIMRDRARFHRFESGCCSCKDYW 555



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 65/134 (48%), Gaps = 2/134 (1%)

Query: 86  YSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145
           + K G++  A ++F  +   DV  WN+MI+G        DA  +F+++    ++PD  +F
Sbjct: 130 FLKGGQLDKAYQIFKRMPVKDVVSWNSMIAGAVRSSHLKDAMILFSRLVNSGLVPDGFSF 189

Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
             +L+AC+  G +  G  +   + +   ++       A+VD+  + G I+ +  +  ++ 
Sbjct: 190 SSVLSACARAGALFYG-VWVHRLMAELGVEKNNILISALVDMYAKCGRIDVSVEIFNTVK 248

Query: 206 MEPDVVVWRALLSA 219
               V +W  ++ +
Sbjct: 249 RN-HVPMWNTMIGS 261


>gi|356558173|ref|XP_003547382.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g50990-like [Glycine max]
          Length = 491

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/410 (57%), Positives = 296/410 (72%), Gaps = 48/410 (11%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVV+WNSM+GG+V+N+RF +AL  FR MLS KVEPD FTFA V+  CARLG L +A
Sbjct: 130 MSVRDVVTWNSMVGGYVKNSRFFDALSIFRRMLSDKVEPDGFTFALVVTACARLGXLGNA 189

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH L++EKK+ELN+ILSAALIDMY+KCG+I ++++V                SG+AIH
Sbjct: 190 KWVHGLMVEKKVELNYILSAALIDMYAKCGRIDVSRQV----------------SGLAIH 233

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GLA +A+ +F++M+M +VLPDSITF+G+LTACSHCG VEEG KYF  M++R+ IQPQL+H
Sbjct: 234 GLAMNANVVFSRMQMESVLPDSITFIGILTACSHCGFVEEGHKYFGMMQNRFMIQPQLKH 293

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG +VDLLGRAG +E+              V+WRALLSACR  ++ ELGEVAI NISRL 
Sbjct: 294 YGTVVDLLGRAGLMED--------------VIWRALLSACRIHRKKELGEVAIANISRLE 339

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            GD VLLSNMYC L  WD AE VR++MK  GVRKS+GKSW+EL   IHQF A  +SH + 
Sbjct: 340 SGDXVLLSNMYCSLN-WDGAERVRQMMKTGGVRKSRGKSWVELGDGIHQFNAAYQSHAQM 398

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           ++I ++L  L       GF P T+LVL+DVSEEE E NL  HSEKL LAY +L       
Sbjct: 399 KSIYRVLEGL------XGFTPLTDLVLVDVSEEEIEENLTFHSEKLVLAYAVL------- 445

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
                NLRIC DCH+ I ++S++L R IIVRDRIRFH+FEGG+CSC DYW
Sbjct: 446 ----XNLRICLDCHNLITIVSKILNRXIIVRDRIRFHQFEGGVCSCRDYW 491



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 20/157 (12%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
           +I+   K G+  + K VF  +   DV  WN+M+ G   +    DA +IF +M    V PD
Sbjct: 111 VIESLMKGGQCDVXK-VFGKMSVRDVVTWNSMVGGYVKNSRFFDALSIFRRMLSDKVEPD 169

Query: 142 SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIE------ 195
             TF  ++TAC+  G +    K+   +     ++       A++D+  + G I+      
Sbjct: 170 GFTFALVVTACARLGXLGNA-KWVHGLMVEKKVELNYILSAALIDMYAKCGRIDVSRQVS 228

Query: 196 ---------EAYGLITSMTME---PDVVVWRALLSAC 220
                     A  + + M ME   PD + +  +L+AC
Sbjct: 229 GLAIHGLAMNANVVFSRMQMESVLPDSITFIGILTAC 265


>gi|222624763|gb|EEE58895.1| hypothetical protein OsJ_10524 [Oryza sativa Japonica Group]
          Length = 901

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/382 (53%), Positives = 280/382 (73%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD+VSWNSMI G  RN+   +A+  F ++++S + PD F+F+SV+  CA+ GA  + 
Sbjct: 245 MPVKDLVSWNSMIAGTARNSCLKDAMNIFSKLVNSGLVPDGFSFSSVLSACAQAGARCYG 304

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH L+ E  +E+N ILS++L+DMY+KCG+I +A  +F T++RN VSVWN MI G+A H
Sbjct: 305 MWVHQLMAELGLEMNHILSSSLVDMYAKCGRIDVAIGIFMTIKRNHVSVWNTMIGGLAAH 364

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL +DA   F +ME   ++PD +TF+ LLTACSH G+VEE R+YF+ M ++YSI P++EH
Sbjct: 365 GLGSDAVMFFREMESEGLVPDGVTFVALLTACSHSGMVEEARQYFEAMTTKYSITPRIEH 424

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YGAMVD L RAG ++EAY L+ +M ++PD V+WRALLSAC  +++ +LGE+ +  I+   
Sbjct: 425 YGAMVDTLSRAGLLDEAYDLVKTMNVKPDAVIWRALLSACCRYRQTKLGEITVKEIAFQG 484

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            GDY LLSN+Y    RW+ +E V +  KKKG+RKS+G SW+EL    H+FKAGDRSHP+ 
Sbjct: 485 SGDYTLLSNIYSSANRWEDSEEVWKERKKKGIRKSKGLSWVELGRSTHEFKAGDRSHPDT 544

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
             I K+L  L  + KSEG++P TELV  DVSEEE+E NL  HSEKLA+AY ILKT P TE
Sbjct: 545 DGIYKVLHRLSNKAKSEGYIPLTELVSKDVSEEEREENLTVHSEKLAVAYSILKTMPRTE 604

Query: 361 IRISKNLRICHDCHSWIKMISR 382
           I +SKNL+ C DCH W+K++S+
Sbjct: 605 IMVSKNLQTCSDCHEWMKIVSK 626



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 4/133 (3%)

Query: 86  YSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145
           + KCG+I  A ++F  +   D+  WN+MI+G A +    DA  IF+K+    ++PD  +F
Sbjct: 229 FLKCGQIDKAYQIFKRMPVKDLVSWNSMIAGTARNSCLKDAMNIFSKLVNSGLVPDGFSF 288

Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
             +L+AC+  G    G  +   + +   ++       ++VD+  + G I+ A G+   MT
Sbjct: 289 SSVLSACAQAGARCYGM-WVHQLMAELGLEMNHILSSSLVDMYAKCGRIDVAIGIF--MT 345

Query: 206 MEPD-VVVWRALL 217
           ++ + V VW  ++
Sbjct: 346 IKRNHVSVWNTMI 358


>gi|218192640|gb|EEC75067.1| hypothetical protein OsI_11193 [Oryza sativa Indica Group]
          Length = 619

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/371 (53%), Positives = 270/371 (72%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD+VSWNSMI G  RN+   +A+  F ++++S + PD F+F+SV+  CA+ GA  + 
Sbjct: 249 MPVKDLVSWNSMIAGTARNSCLKDAMNIFSKLVNSGLVPDGFSFSSVLSACAQAGARCYG 308

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH L+ E  +E+N ILS++L+DMY+KCG+I +A  +F T++RN VSVWN MI G+A H
Sbjct: 309 MWVHQLMAELGLEMNHILSSSLVDMYAKCGRIDVAIGIFKTIKRNHVSVWNTMIGGLAAH 368

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL +DA   F +ME   ++PD +TF+ LLTACSH G+VEE R+YF+ M ++YSI P++EH
Sbjct: 369 GLGSDAVMFFREMESEGLVPDGVTFVALLTACSHSGMVEEARQYFEAMTTKYSITPRIEH 428

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YGAMVD L RAG ++EAY L+ +M ++PD V+WRALLSAC  +++ +LGE+ +  I+   
Sbjct: 429 YGAMVDTLSRAGLLDEAYDLVKTMNVKPDAVIWRALLSACCRYRQTKLGEITVKEIAFQG 488

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            GDY LLSN+Y    RW+ +E V +  KKKG+RKS+G SW+EL    H+FKAGDRSHP+ 
Sbjct: 489 SGDYTLLSNIYSSANRWEDSEEVWKERKKKGIRKSKGLSWVELGRSTHEFKAGDRSHPDT 548

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
             I K+L  L  + KSEG++P TELV  DVSEEE+E NL  HSEKLA+AY ILKT P TE
Sbjct: 549 DGIYKVLHRLSNKAKSEGYIPLTELVSKDVSEEEREENLTVHSEKLAVAYSILKTMPRTE 608

Query: 361 IRISKNLRICH 371
           I +SKNL+ C 
Sbjct: 609 IMVSKNLQTCQ 619



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 2/132 (1%)

Query: 86  YSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145
           + KCG+I  A ++F  +   D+  WN+MI+G A +    DA  IF+K+    ++PD  +F
Sbjct: 233 FLKCGQIDKAYQIFKRMPVKDLVSWNSMIAGTARNSCLKDAMNIFSKLVNSGLVPDGFSF 292

Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
             +L+AC+  G    G  +   + +   ++       ++VD+  + G I+ A G+  ++ 
Sbjct: 293 SSVLSACAQAGARCYGM-WVHQLMAELGLEMNHILSSSLVDMYAKCGRIDVAIGIFKTIK 351

Query: 206 MEPDVVVWRALL 217
               V VW  ++
Sbjct: 352 RN-HVSVWNTMI 362


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/411 (48%), Positives = 270/411 (65%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++D++SW+SMI  + +  + +EALR F EM  + V PDK T  SV+  C  +GAL     
Sbjct: 230 ERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKM 289

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  I   +IE++  L  +L+DMY+KCG I  +  VF+ +   DV  W+AMI G+A HG 
Sbjct: 290 IHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGF 349

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
              A   F+KM   ++ P+ +TF+G+L+ACSH GLV+EG  YF  M   Y + P++EHYG
Sbjct: 350 GELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYG 409

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL--- 239
            +VD+LGRAG ++EA  LI SM   PD +VWRALL ACR +K +E+ E A VN+  L   
Sbjct: 410 CVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPH 469

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           + G+YVLLSN+Y   K WD   NVR +MK   ++K  G S +E+   +H+F AGD+SHPE
Sbjct: 470 VDGNYVLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPE 529

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           ++ I ++L  +  R K+ G+ P T  VL D  E+EKE  L HHSEKLA+A+G+L T+PG+
Sbjct: 530 SKKILRMLSEITARLKANGYAPLTASVLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGS 589

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI KNLR+C DCH  IK+ISR  +R IIVRDR RFH F  G CSC DYW
Sbjct: 590 TIRIVKNLRVCDDCHIAIKLISRTYKRRIIVRDRNRFHHFVNGSCSCKDYW 640



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 128/306 (41%), Gaps = 68/306 (22%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEP-DKFTFASVIYGCARLGALNH 59
           +P  D   WN+MI  ++ +    E++  F +M   +  P D ++ + VI  C RL    +
Sbjct: 64  IPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGN 123

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEV--------------------- 98
              +H  +++  +  +  +  ALI+MY+K G I++A+ +                     
Sbjct: 124 GQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVR 183

Query: 99  ----------FDTVQRNDVSVWNAMISGVAIHG-----------------------LAAD 125
                     FD +   D+  WN MI G A  G                       +AA 
Sbjct: 184 VGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAY 243

Query: 126 ASA--------IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           A A        +F +M++ NVLPD +T + +L+AC   G +  G+   + +  R  I+  
Sbjct: 244 AKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIE-RNRIEID 302

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
           L+   ++VD+  + G I+ +  +   M    DV  W A++           GE+A+ + S
Sbjct: 303 LKLGTSLVDMYAKCGDIDNSLRVFNGMN-NRDVFAWSAMIMGLANHG---FGELALDHFS 358

Query: 238 RLMGGD 243
           +++  D
Sbjct: 359 KMISED 364



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 73/140 (52%), Gaps = 7/140 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++DV +W++MI G   +   + AL  F +M+S  ++P+  TF  V+  C+ +G ++  
Sbjct: 329 MNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEG 388

Query: 61  YWVHNLIIEKKIELNFILS--AALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGV 117
            W +   + K  +++  +     ++D+  + G++Q A E+  ++    D  VW A++   
Sbjct: 389 -WTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLGAC 447

Query: 118 AIHG---LAADASAIFTKME 134
            I+    +A +A+    ++E
Sbjct: 448 RIYKNVEIAEEATVNLLELE 467



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 6/166 (3%)

Query: 57  LNHAYWVHNLIIEKKIE-LNFILSAALIDMY--SKCGKIQMAKEVFDTVQRNDVSVWNAM 113
           LN    +H LII+  ++  NF+L+  L  ++  S    +  A+ VFD +   D  +WN M
Sbjct: 16  LNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTM 75

Query: 114 ISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRSRY 172
           I          ++ ++F +M     +P DS +   ++ AC        G+K    +  + 
Sbjct: 76  IRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVL-KI 134

Query: 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
            +   L    A++++  + G IE A  ++  M   PD+V +  LL+
Sbjct: 135 GLGSDLFVETALIEMYAKFGDIEIARNILDEMA-HPDLVPYNVLLA 179


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/413 (47%), Positives = 276/413 (66%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++DVV WN MIGG+ ++   +E+L+ FR ML +K  P++ T  +V+  C +LGAL   
Sbjct: 233 MKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESG 292

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H+ I  K I++N  +  ALIDMYSKCG ++ A+ VFD ++  DV  WN+MI G A+H
Sbjct: 293 RWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMH 352

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G +  A  +F +M      P  ITF+G+L+AC H GLVEEGR +F  MR +Y I+P++EH
Sbjct: 353 GFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEH 412

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MV+LLGRAGH+EEAYGL+ +MT+  D V+W  LL  CR    ++LGE     +V+  
Sbjct: 413 YGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQK 472

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSNMY     W+    +R +MK+ G+ K  G S +E+   +H+F AG+R H
Sbjct: 473 LANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERKH 532

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+++ I  +L  +    K+ G+ P T++VL D+ EE+KE +L  HSEKLA+A+G++ T P
Sbjct: 533 PKSKEIYVMLNEINSWLKARGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFGLISTKP 592

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT ++I KNLR+C DCH+ +KMIS +  R I++RDR RFH FE GLCSCGDYW
Sbjct: 593 GTTVKIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 645



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 122/242 (50%), Gaps = 29/242 (11%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA---------- 52
           + +V S++++I   V++  FD A  ++ +MLS  VEP+ FTF+SV+  C+          
Sbjct: 107 EPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCSLESGKVLHCQ 166

Query: 53  --RLGALNHAYWVHNLI---------------IEKKIELNFILSAALIDMYSKCGKIQMA 95
             +LG  +  Y    L+                +K  E + +    ++  YSK G++  A
Sbjct: 167 AIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKA 226

Query: 96  KEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHC 155
           + +F+ ++  DV  WN MI G A  G+  ++  +F +M +   +P+ +T L +L+AC   
Sbjct: 227 RSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQL 286

Query: 156 GLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRA 215
           G +E GR    ++ ++  IQ  +    A++D+  + G +E+A  L+     + DVV W +
Sbjct: 287 GALESGRWIHSYIENK-GIQINVHVGTALIDMYSKCGSLEDAR-LVFDRIRDKDVVAWNS 344

Query: 216 LL 217
           ++
Sbjct: 345 MI 346



 Score = 45.4 bits (106), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 85/209 (40%), Gaps = 44/209 (21%)

Query: 44  FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           FAS+I    +  ++ H   +H  ++ + +  N IL+  L   Y+  G++  +  VF+T  
Sbjct: 50  FASLI---DKSKSVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFD 106

Query: 104 RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS-------HCG 156
             +V  ++A+I       L   A   +++M    V P++ TF  +L +CS       HC 
Sbjct: 107 EPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCSLESGKVLHCQ 166

Query: 157 LVEEG------------------------RKYFDHM--RSRYSIQPQLEHYGAMVDLLGR 190
            ++ G                        R+ FD M  RS  S+   L  Y  M      
Sbjct: 167 AIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKM------ 220

Query: 191 AGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            G +++A  L   M  E DVV W  ++  
Sbjct: 221 -GELDKARSLFEGMK-ERDVVCWNVMIGG 247


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 187/413 (45%), Positives = 277/413 (67%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KD VSW +MI G++R+ RF EAL  FR M ++ V+PD+FT  SV+  CA LGAL   
Sbjct: 311 MPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELG 370

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+   I   KI+ +  +  ALIDMY KCG +  A+ +F  + + D   W AMI G+A++
Sbjct: 371 EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVN 430

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F+ M   ++LPD IT++G+L+AC+H GLV++GRKYF  M S++ I+P + H
Sbjct: 431 GHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAH 490

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG +VDLL RAG ++EAY +I +M ++ + +VW ALL+ CR ++  ++ E+ +  I  L 
Sbjct: 491 YGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELE 550

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              G  YVLL N+Y   KRW+    +R++M  KG++K+ G S +E+ G +H+F AGDRSH
Sbjct: 551 PDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSH 610

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + ID  L  + Q  K  G+ P    V +D++EE+KE +++ HSEKLA+A+G++ + P
Sbjct: 611 PQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPP 670

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI+KNLR+C DCH+  K++S++  R +IVRDR RFH F+ GLCSC DYW
Sbjct: 671 GVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 723



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 136/279 (48%), Gaps = 8/279 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+ ++  WN+MI G+ R       +  + EML   V+PD++TF  +  G  R  AL + 
Sbjct: 78  IPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYG 137

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++  ++ N  +  AL+ MY  CG++  A+ VFD   + DV  WN +IS     
Sbjct: 138 RQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKV 197

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   ++  +F  ME   VLP ++T + +L+ACS    +  G+K   ++++   ++  L  
Sbjct: 198 GKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKN-CKVESNLVL 256

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
             AM+D+    G ++ A G+  SM    D++ W  ++S    F  L   +VA     ++ 
Sbjct: 257 ENAMIDMYADCGEMDSALGIFRSMN-NRDIISWTTIVSG---FTNLGEIDVARNYFDKMP 312

Query: 241 GGDYVLLSNM---YCYLKRWDTAENVREIMKKKGVRKSQ 276
             DYV  + M   Y    R+  A  +   M+   V+  +
Sbjct: 313 EKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDE 351



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 113/250 (45%), Gaps = 39/250 (15%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P  DV++WN +I  + +  +F+E+ R F  M   +V P   T   V+  C++L  L    
Sbjct: 180 PKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGK 239

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGK------------------------------ 91
            VH+ +   K+E N +L  A+IDMY+ CG+                              
Sbjct: 240 KVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLG 299

Query: 92  -IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150
            I +A+  FD +   D   W AMI G        +A  +F  M+  NV PD  T + +LT
Sbjct: 300 EIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLT 359

Query: 151 ACSHCGLVEEG---RKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME 207
           AC+H G +E G   R Y D    R  I+  L    A++D+  + G +++A  +   M+ +
Sbjct: 360 ACAHLGALELGEWIRTYID----RNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS-Q 414

Query: 208 PDVVVWRALL 217
            D   W A++
Sbjct: 415 RDKFTWTAMI 424



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 83/191 (43%), Gaps = 7/191 (3%)

Query: 39  PDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM--YSKCGKIQMAK 96
           P      S++  C  +  L     VH   I+K +  N +L   ++      + G  Q A+
Sbjct: 16  PPTHPLISLLETCESMDQLQQ---VHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYAR 72

Query: 97  EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
            +FD +   ++ +WN MI G +         +++ +M    V PD  TF  L    +   
Sbjct: 73  RLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDI 132

Query: 157 LVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRAL 216
            +E GR+   H+  ++ +Q  +  + A+V +    G ++ A G+   +  + DV+ W  +
Sbjct: 133 ALEYGRQLHGHVL-KHGLQYNVFVHTALVQMYLLCGQLDTARGVF-DVCPKADVITWNMI 190

Query: 217 LSACRTFKRLE 227
           +SA     + E
Sbjct: 191 ISAYNKVGKFE 201


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/417 (49%), Positives = 276/417 (66%), Gaps = 7/417 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML---SSKVEPDKFTFASVIYGCARLGAL 57
           MP+++V+SW+ MI G+VR  ++ EAL  FREM     + V P++FT + V+  C RLGAL
Sbjct: 125 MPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGAL 184

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN-DVSVWNAMISG 116
            H  W H  I +  + ++ +L  ALIDMY+KCG ++ A  VF  +  N DV  W+AMISG
Sbjct: 185 EHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISG 244

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
           +A+HGLA +   +F+KM    V P+++TFL +  AC H GLV EG+ Y   M   YSI P
Sbjct: 245 LAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIP 304

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI--- 233
            ++HYG MVDL GRAG I+EA+ ++ SM MEPDV+VW ALLS  R    +E  E+A+   
Sbjct: 305 TIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKL 364

Query: 234 VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
           + +     G YVLLSN+Y    RW+   +VR++M+  G++K  G S +E+ GV+H+F  G
Sbjct: 365 IELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVG 424

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           D SHPE + I  +L  +++R K EG++  T+ VL+D+ EE KE  L  HSEKLALAYG L
Sbjct: 425 DDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLHSEKLALAYGFL 484

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           KTSPGT IRI KNLRIC DCH  IKMIS++  R IIVRD  RFH F  GLCSC DYW
Sbjct: 485 KTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 541



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 106/229 (46%), Gaps = 15/229 (6%)

Query: 2   PDKDVVSWNSMIGGFVR-----NARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA 56
           P  +   WN++I   V+            +  F  M    V+PD  TF  ++   A    
Sbjct: 20  PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSL 79

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
           L+    VH  I+   + ++  +  +LI MYS  G + MA+ +F  +   +V  W+ MI+G
Sbjct: 80  LHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMING 139

Query: 117 VAIHGLAADASAIFTKMEMF---NVLPDSITFLGLLTACSHCGLVEEGR---KYFDHMRS 170
               G   +A A+F +M+M    +V P+  T  G+L AC   G +E G+    Y D    
Sbjct: 140 YVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYID---- 195

Query: 171 RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +  +   +    A++D+  + G +E+A  + +++    DV+ W A++S 
Sbjct: 196 KCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISG 244


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 187/413 (45%), Positives = 276/413 (66%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KD VSW +MI G++R+ RF EAL  FR M ++ V+PD+FT  SV+  CA LGAL   
Sbjct: 332 MPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELG 391

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+   I   KI+ +  +  ALIDMY KCG +  A+ +F  + + D   W AMI G+A++
Sbjct: 392 EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVN 451

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F+ M   ++LPD IT++G+L+AC+H GLV++GRKYF  M S++ I+P + H
Sbjct: 452 GHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAH 511

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG +VDLL RAG ++EAY +I +M ++ + +VW ALL+ CR ++  ++ E+ +  I  L 
Sbjct: 512 YGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELE 571

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              G  YVLL N+Y   KRW+    +R++M  KG++K  G S +E+ G +H+F AGDRSH
Sbjct: 572 PDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSH 631

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + ID  L  + Q  K  G+ P    V +D++EE+KE +++ HSEKLA+A+G++ + P
Sbjct: 632 PQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPP 691

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI+KNLR+C DCH+  K++S++  R +IVRDR RFH F+ GLCSC DYW
Sbjct: 692 GVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 744



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 136/279 (48%), Gaps = 8/279 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+ ++  WN+MI G+ R       +  + EML   V+PD++TF  +  G  R  AL + 
Sbjct: 99  IPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYG 158

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++  ++ N  +  AL+ MY  CG++  A+ VFD   + DV  WN +IS     
Sbjct: 159 RQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKV 218

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   ++  +F  ME   VLP ++T + +L+ACS    +  G+K   ++++   ++  L  
Sbjct: 219 GKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKN-CKVESNLVL 277

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
             AM+D+    G ++ A G+  SM    D++ W  ++S    F  L   +VA     ++ 
Sbjct: 278 ENAMIDMYADCGEMDSALGIFRSMN-NRDIISWTTIVSG---FTNLGEIDVARNYFDKMP 333

Query: 241 GGDYVLLSNM---YCYLKRWDTAENVREIMKKKGVRKSQ 276
             DYV  + M   Y    R+  A  +   M+   V+  +
Sbjct: 334 EKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDE 372



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 113/250 (45%), Gaps = 39/250 (15%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P  DV++WN +I  + +  +F+E+ R F  M   +V P   T   V+  C++L  L    
Sbjct: 201 PKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGK 260

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGK------------------------------ 91
            VH+ +   K+E N +L  A+IDMY+ CG+                              
Sbjct: 261 KVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLG 320

Query: 92  -IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150
            I +A+  FD +   D   W AMI G        +A  +F  M+  NV PD  T + +LT
Sbjct: 321 EIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLT 380

Query: 151 ACSHCGLVEEG---RKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME 207
           AC+H G +E G   R Y D    R  I+  L    A++D+  + G +++A  +   M+ +
Sbjct: 381 ACAHLGALELGEWIRTYID----RNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS-Q 435

Query: 208 PDVVVWRALL 217
            D   W A++
Sbjct: 436 RDKFTWTAMI 445



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 83/191 (43%), Gaps = 7/191 (3%)

Query: 39  PDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM--YSKCGKIQMAK 96
           P      S++  C  +  L     VH   I+K +  N +L   ++      + G  Q A+
Sbjct: 37  PPTHPLISLLETCESMDQLQQ---VHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYAR 93

Query: 97  EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
            +FD +   ++ +WN MI G +         +++ +M    V PD  TF  L    +   
Sbjct: 94  RLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDI 153

Query: 157 LVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRAL 216
            +E GR+   H+  ++ +Q  +  + A+V +    G ++ A G+   +  + DV+ W  +
Sbjct: 154 ALEYGRQLHGHVL-KHGLQYNVFVHTALVQMYLLCGQLDTARGVF-DVCPKADVITWNMI 211

Query: 217 LSACRTFKRLE 227
           +SA     + E
Sbjct: 212 ISAYNKVGKFE 222


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/417 (49%), Positives = 276/417 (66%), Gaps = 7/417 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML---SSKVEPDKFTFASVIYGCARLGAL 57
           MP+++V+SW+ MI G+VR  ++ EAL  FREM     + V P++FT + V+  C RLGAL
Sbjct: 156 MPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGAL 215

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN-DVSVWNAMISG 116
            H  W H  I +  + ++ +L  ALIDMY+KCG ++ A  VF  +  N DV  W+AMISG
Sbjct: 216 EHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISG 275

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
           +A+HGLA +   +F+KM    V P+++TFL +  AC H GLV EG+ Y   M   YSI P
Sbjct: 276 LAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIP 335

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI--- 233
            ++HYG MVDL GRAG I+EA+ ++ SM MEPDV+VW ALLS  R    +E  E+A+   
Sbjct: 336 TIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKL 395

Query: 234 VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
           + +     G YVLLSN+Y    RW+   +VR++M+  G++K  G S +E+ GV+H+F  G
Sbjct: 396 IELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVG 455

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           D SHPE + I  +L  +++R K EG++  T+ VL+D+ EE KE  L  HSEKLALAYG L
Sbjct: 456 DDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLHSEKLALAYGFL 515

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           KTSPGT IRI KNLRIC DCH  IKMIS++  R IIVRD  RFH F  GLCSC DYW
Sbjct: 516 KTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 572



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 110/260 (42%), Gaps = 46/260 (17%)

Query: 2   PDKDVVSWNSMIGGFVR-----NARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA 56
           P  +   WN++I   V+            +  F  M    V+PD  TF  ++   A    
Sbjct: 20  PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSL 79

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA---- 112
           L+    VH  I+   + ++  +  +LI MYS CG +  A++VFD + + D+  WN+    
Sbjct: 80  LHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINA 139

Query: 113 ---------------------------MISGVAIHGLAADASAIFTKMEMF---NVLPDS 142
                                      MI+G    G   +A A+F +M+M    +V P+ 
Sbjct: 140 NFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNE 199

Query: 143 ITFLGLLTACSHCGLVEEGR---KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199
            T  G+L AC   G +E G+    Y D    +  +   +    A++D+  + G +E+A  
Sbjct: 200 FTMSGVLAACGRLGALEHGKWAHAYID----KCGMPVDVVLGTALIDMYAKCGSVEKATW 255

Query: 200 LITSMTMEPDVVVWRALLSA 219
           + +++    DV+ W A++S 
Sbjct: 256 VFSNLGPNKDVMAWSAMISG 275


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/413 (48%), Positives = 271/413 (65%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K++  WN MI G V ++ ++EAL  F EM  S V+ DK T AS++  C  LGAL   
Sbjct: 299 MPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELG 358

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H  I ++KIE++  L  AL+DMY+KCG I+ A  VF  +   DV  W A+I G+A+ 
Sbjct: 359 KWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMC 418

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +M+M  V PD+ITF+G+L ACSH GLV EG  YF+ M ++Y IQP +EH
Sbjct: 419 GQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEH 478

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVD+LGRAG I EA  LI +M M PD  V   LLSACR    L + E A   ++ + 
Sbjct: 479 YGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELD 538

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              GG YVLLSN+Y  +K W+ A+ +RE+M ++ ++K  G S +E+ GV+H+F  GD SH
Sbjct: 539 PKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSH 598

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P++  I + L  +++R KS G++P    VL D+ E+EKE  L  HSEKLA+A+G+L T+P
Sbjct: 599 PQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTP 658

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IR+ KNLR+C DCHS +K IS +  R IIVRDR RFH F  G CSC D+W
Sbjct: 659 GTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 711



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 126/241 (52%), Gaps = 12/241 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +K VVSW +MIG + +     EA++ FR M  + V+P++ T  +V+  CAR   L  A
Sbjct: 198 MVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETA 257

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  I E  I  + +L++AL+D+Y KCG   +A+++F+ +   ++  WN MI+G    
Sbjct: 258 KQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVED 317

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A ++F +M++  V  D +T   LL AC+H G +E G K+      +  I+  +  
Sbjct: 318 SDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELG-KWLHVYIEKEKIEVDVAL 376

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRAL----------LSACRTFKRLELGE 230
             A+VD+  + G IE A  +   M  E DV+ W AL          L A   F  +++ E
Sbjct: 377 GTALVDMYAKCGSIESAMRVFQEMP-EKDVMTWTALIVGLAMCGQGLKALELFHEMQMSE 435

Query: 231 V 231
           V
Sbjct: 436 V 436



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 133/309 (43%), Gaps = 40/309 (12%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+    + NS+I G+       +A+ F++ M+   ++PD+FTF S+   C   G L   
Sbjct: 100 IPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC---GVLCEG 156

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H    +     +  +   L++MYS CG +  A++VFD +    V  W  MI   A  
Sbjct: 157 KQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQW 216

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---KYFDH---------M 168
            L  +A  +F +ME+ +V P+ IT + +LTAC+    +E  +   KY D           
Sbjct: 217 DLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLT 276

Query: 169 RSRYSIQPQLEHYGAMVDLLGRA-------------GHI-----EEAYGLITSMTM---E 207
            +   +  +   Y    DL  +              GH+     EEA  L   M +   +
Sbjct: 277 SALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVK 336

Query: 208 PDVVVWRALLSACRTFKRLELGEVAIVNISR-LMGGDYVL---LSNMYCYLKRWDTAENV 263
            D V   +LL AC     LELG+   V I +  +  D  L   L +MY      ++A  V
Sbjct: 337 GDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRV 396

Query: 264 REIMKKKGV 272
            + M +K V
Sbjct: 397 FQEMPEKDV 405


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 187/413 (45%), Positives = 278/413 (67%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D VSW +MI G++R   + EAL  FREM +SK++PD+FT  SV+  CA+LGAL   
Sbjct: 223 MPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELG 282

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+   I + K++ +  +  ALIDMY KCG ++MA  +F+T+ + D   W AM+ G+AI+
Sbjct: 283 EWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAIN 342

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F++M   +V PD +T++G+L+AC+H G+V+EG+K+F  M +R+ I+P + H
Sbjct: 343 GCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAH 402

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDLLG+AGH++EA+ +I +M M+P+ +VW ALL ACR  K  E+ E AI  I  L 
Sbjct: 403 YGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELE 462

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              G  YVL  N+Y    +WD    +R++M  +G++K+ G S +E+ G++H+F AGD+SH
Sbjct: 463 PNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQSH 522

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I   L  +    K  G+ P T  V +D++EE+KE  +Y HSEKLA+A+G++ + P
Sbjct: 523 PQTKEIYGKLNKMTSDLKIAGYSPNTSEVFLDIAEEDKENAVYRHSEKLAIAFGLINSGP 582

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KNLR+C DCH   K++S++  R +IVRDR RFH F  G CSC DYW
Sbjct: 583 GVTIRIVKNLRMCIDCHHVAKLVSKVYDREVIVRDRTRFHHFRHGSCSCKDYW 635



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 109/233 (46%), Gaps = 26/233 (11%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+  V SWN M  G+ R A     +  + EML   V+PD +T+  +  G  R  AL   
Sbjct: 74  IPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLG 133

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++  ++ N     ALI+MYS CG I MA+ +FD   ++DV  WNAMISG    
Sbjct: 134 RELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYN-- 191

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                            +  D I++  ++T   + G V+  RKYF  M  R  +      
Sbjct: 192 ----------------RIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVS----- 230

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGE 230
           + AM+D   R    +EA  L   M    ++PD     ++L+AC     LELGE
Sbjct: 231 WTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGE 283



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 10/171 (5%)

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
           N II+ KI L+F  S    DM         A+++FDT+    V  WN M  G +      
Sbjct: 45  NPIIQNKI-LSFCCSREFGDMC-------YARQLFDTIPEPSVFSWNIMFKGYSRIACPK 96

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
              +++ +M   NV PD  T+  L    +    ++ GR+   H+  +Y +   +  + A+
Sbjct: 97  LGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHV-VKYGLDSNVFAHNAL 155

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVN 235
           +++    G I+ A G I  M+ + DVV W A++S     K+  +   AIV 
Sbjct: 156 INMYSLCGLIDMARG-IFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVT 205


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/414 (48%), Positives = 275/414 (66%), Gaps = 6/414 (1%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P++++VSWNS++ GF  N R +E L  FREML  +  PD FT  SV+  CA +G L    
Sbjct: 186 PERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGR 245

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT--VQRNDVSVWNAMISGVAI 119
            VH  + +  +  N     ALID+Y+KCG +  A+++F    V R  VS W ++I G+A+
Sbjct: 246 RVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVS-WTSLIVGLAV 304

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G   DA  +F+ ME   ++P  IT +G+L ACSHCGLV++G +YFD M++ Y I P++E
Sbjct: 305 NGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIE 364

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           H G MVDLLGRAG +EEA+  IT+M +EP+ VVWR LL AC   K+LE+GE A   +V +
Sbjct: 365 HLGCMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGACAMHKKLEIGEAAWARLVEL 424

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                GDYVLLSN+Y  + RW     +R+ M   GVRK+ G S +EL   +++F  GDRS
Sbjct: 425 DPGHSGDYVLLSNLYAGVGRWADVHVLRKTMVTHGVRKNPGHSLVELRNSVYEFVMGDRS 484

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HPE   I ++LG + +R + +G++P T  VL D+ +EEKE  L +HSE+LA+A+ +LK+ 
Sbjct: 485 HPETDQIYEMLGDIAERLRRQGYIPHTSNVLADIEDEEKESALNYHSERLAIAFALLKSL 544

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PGT IRI KNLR+C DCH  IK+IS++  R IIVRDR RFH F+GG CSC DYW
Sbjct: 545 PGTPIRIVKNLRVCGDCHMAIKLISKVYDREIIVRDRSRFHHFKGGACSCKDYW 598



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 122/256 (47%), Gaps = 10/256 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  D  S N+++  F  +AR   AL   R  L+    PD  T+  ++  CARL AL + 
Sbjct: 85  LPSPDPFSLNTVLRIFASSARPRVALALHRRHLAP---PDTHTYPPLLQACARLLALRYG 141

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV---QRNDVSVWNAMISGV 117
             +H    +  +     +  +L+ +Y  CG  + A  VFD +   +RN VS WN++++G 
Sbjct: 142 EGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVS-WNSVLNGF 200

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           A +G   +   +F +M      PD  T + +LTAC+  G++  GR+    + ++  +   
Sbjct: 201 AANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFV-AKVGLVGN 259

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS--ACRTFKRLELGEVAIVN 235
                A++DL  + G +++A  +   M +   VV W +L+   A   F    L   +++ 
Sbjct: 260 AHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMME 319

Query: 236 ISRLMGGDYVLLSNMY 251
             +LM  +  ++  +Y
Sbjct: 320 REKLMPTEITMVGVLY 335


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/413 (46%), Positives = 271/413 (65%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPD+DVVSW+ MI G+V+ +RF E L  F++M+  K+EP++    + +  CA LGA+   
Sbjct: 228 MPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQG 287

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+   +  K + L   L  ALIDMYSKCG ++ A EVF  ++  +V  W+AMI+G+AI+
Sbjct: 288 QWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAIN 347

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA  +F++MEM  V P+ +TF+G+L ACSH  LV+EG  +F  M S Y ++P   H
Sbjct: 348 GQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHH 407

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           +  MVDL GRAG +++A  +I SM  +P+  +W ALL+ACR     ELGE     ++ + 
Sbjct: 408 HCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELD 467

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              GG YVLLSN+Y    RWD    +R +M+++ V K+ G S+++L   IH+F AGD SH
Sbjct: 468 PNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDTIHEFVAGDSSH 527

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I   LG + Q  K+ G+ P T  VL+D+ EEEKE  L HHSEKLA+A+G++KT P
Sbjct: 528 PQLEMIYAKLGEMSQELKAAGYKPDTGQVLLDMDEEEKETALCHHSEKLAIAFGLIKTDP 587

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IRI+KNLR+C DCHS  K+IS++  R IIVRDR RFH F  G CSC D+W
Sbjct: 588 GTTIRITKNLRVCADCHSATKLISKIYNREIIVRDRCRFHHFRDGSCSCMDFW 640



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 108/248 (43%), Gaps = 34/248 (13%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNHAYW 62
            D+   N++I  +  +    +A+ F+ EM  SS V PD  TF  ++  C+ + +L     
Sbjct: 98  PDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEA 157

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+ + +        +S  L+ MY+ CG I+ A  VFD     D + WN MI G    G+
Sbjct: 158 IHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGV 217

Query: 123 AADASAIFTKMEMFNVL-------------------------------PDSITFLGLLTA 151
              A  +F  M   +V+                               P+    +  L+A
Sbjct: 218 FKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSA 277

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           C+H G +E+G ++ +    R +++  +    A++D+  + G +E A  +   M  E +V+
Sbjct: 278 CAHLGAMEQG-QWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMK-EKNVL 335

Query: 212 VWRALLSA 219
            W A+++ 
Sbjct: 336 AWSAMING 343


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/414 (45%), Positives = 275/414 (66%), Gaps = 7/414 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D +SW++MI G+++   F EAL  F +M   K+ P KF   SV+  CA LGAL+  
Sbjct: 263 MKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQG 322

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H       I+L+ +L  +L+DMY+KCG+I +A EVF+ +   +VS WNAMI G+A+H
Sbjct: 323 RWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMH 382

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A DA  +F+KM+++   P+ ITF+G+L AC+H GLV++G   F+ MR  Y ++PQ+EH
Sbjct: 383 GRAEDAIDLFSKMDIY---PNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEH 439

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG +VDLLGRAG + EA  +++S+  EP   VW ALL ACR    +ELGE     ++ + 
Sbjct: 440 YGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELE 499

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELA-GVIHQFKAGDRS 296
               G Y LLSN+Y    RW+    VR++MK++G++ + G S ++L  G +H+F  GD S
Sbjct: 500 PQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGS 559

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+ + I ++L  + +R + EG+ P    VL D+ EEEKE  ++ HSEKLA+ +G++ TS
Sbjct: 560 HPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTS 619

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PGT IRI KNLR+C DCHS  K+IS++  R IIVRDRIR+H F  G CSC D+W
Sbjct: 620 PGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 673



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 129/292 (44%), Gaps = 27/292 (9%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +V  WN MI   + N    +A+  + EM+ +   P+K+T+ +V+  C+  G +     VH
Sbjct: 102 NVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVH 161

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN-DVSVWNAMISGVAIHGLA 123
             +++  +  +  + ++ I MY+  G++  A+ + D      D   WNAMI G    G  
Sbjct: 162 AHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEV 221

Query: 124 ADASAIFTKMEMFNVLPDS---ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
             A       E+F  +PD     T+  +++  S CG+VE  R++FD M+ R  I      
Sbjct: 222 EAAR------ELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEIS----- 270

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELGE----VAI 233
           + AM+D   + G   EA  +   M  E   P   V  ++LSAC     L+ G      A 
Sbjct: 271 WSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAK 330

Query: 234 VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAG 285
            N  +L G     L +MY    R D A  V E M  K V      SW  + G
Sbjct: 331 RNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEV-----SSWNAMIG 377



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 40/223 (17%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D V WN+MI G++R    + A   F  M      PD+   ++               W  
Sbjct: 204 DAVCWNAMIDGYLRFGEVEAARELFEGM------PDRSMIST---------------W-- 240

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
                           A+I  +S+CG +++A+E FD ++  D   W+AMI G    G   
Sbjct: 241 ---------------NAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFM 285

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           +A  IF +M+   + P       +L+AC++ G +++GR +      R SIQ       ++
Sbjct: 286 EALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGR-WIHTYAKRNSIQLDGVLGTSL 344

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
           VD+  + G I+ A+ +   M+   +V  W A++       R E
Sbjct: 345 VDMYAKCGRIDLAWEVFEKMS-NKEVSSWNAMIGGLAMHGRAE 386



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 78/177 (44%), Gaps = 6/177 (3%)

Query: 56  ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCG-----KIQMAKEVFDTVQRNDVSVW 110
           +L+H    H LI+      +  ++ +L+  Y+          + +  VFD V++ +V +W
Sbjct: 47  SLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLW 106

Query: 111 NAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS 170
           N MI     +     A  ++ +M + +  P+  T+  +L ACS  G+V EG +   H+  
Sbjct: 107 NCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHL-V 165

Query: 171 RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
           ++ +        + + +    G + EA  ++     E D V W A++     F  +E
Sbjct: 166 KHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVE 222


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/413 (48%), Positives = 272/413 (65%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +K++VSW+SMI G+  N    EAL  F +ML+  ++PD +    V+  CARLGAL   
Sbjct: 270 MLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELG 329

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W  NLI   +   N +L  ALIDMY+KCG++  A EVF  +++ D  VWNA ISG+A+ 
Sbjct: 330 DWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMS 389

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA  +F +ME   + PD  TF+GLL AC+H GLVEEGR+YF+ M   +++ P++EH
Sbjct: 390 GHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEH 449

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDLLGRAG ++EA+ LI SM ME + +VW ALL  CR  +  +L EV +  +  L 
Sbjct: 450 YGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALE 509

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G+YVLLSN+Y    +W+ A  +R IM ++GV+K  G SW+E+ GV+HQF  GD SH
Sbjct: 510 PWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSH 569

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P ++ I   LG L +  K+ G++P T+ VL D+ EEEKE  +  HSEKLA+A+G++ T+P
Sbjct: 570 PLSEKIYAKLGELAKDLKAAGYVPTTDHVLFDIEEEEKEHFIGCHSEKLAVAFGLISTAP 629

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             +I + KNLR+C DCH  IK ISR+  R IIVRD  RFH F  GLCSC DYW
Sbjct: 630 NDKILVVKNLRVCGDCHEAIKHISRIAGREIIVRDNNRFHCFTDGLCSCKDYW 682



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 112/219 (51%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +PDK+  SW + I G+V   +  EA+  FR +L   + PD F+   V+  C R G L   
Sbjct: 169 IPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSG 228

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+   I E  +  N  ++ AL+D Y KCG ++ A+ VFD +   ++  W++MI G A +
Sbjct: 229 EWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASN 288

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  +F KM    + PD    +G+L +C+  G +E G    + +     +   +  
Sbjct: 289 GLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLG 348

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++D+  + G ++ A+ +   M  + D VVW A +S 
Sbjct: 349 T-ALIDMYAKCGRMDRAWEVFRGMR-KKDRVVWNAAISG 385



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 112/217 (51%), Gaps = 2/217 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + ++  +N+MI G V N  F E++  +  M    + PD FTF  V+  CAR+        
Sbjct: 70  EPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVK 129

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+L+++   E +  +  +LI++Y+KCG I  A +VFD +   + + W A ISG    G 
Sbjct: 130 MHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGK 189

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F ++    + PDS + + +L+AC   G +  G ++ D   +   +   +    
Sbjct: 190 CREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSG-EWIDEYITENGMVRNVFVAT 248

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A+VD  G+ G++E A  +   M +E ++V W +++  
Sbjct: 249 ALVDFYGKCGNMERARSVFDGM-LEKNIVSWSSMIQG 284


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/413 (46%), Positives = 270/413 (65%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP + VVSWN MI G+ +N  F EA+  F+EM SS ++P+  T  SV+   AR+GAL   
Sbjct: 230 MPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELG 289

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H    + KIE++ +L +AL+DMYSKCG I  A +VF+T+ + +   W+A+I   A+H
Sbjct: 290 KWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMH 349

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A DA   F  M    V P+ + ++G+L+ACSH GLVEEGR +F HM     +QP++EH
Sbjct: 350 GRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEH 409

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG MVDLLGRAGH+EEA  LI +M +EPD V+W+ALL AC+  K L++GE     +  L 
Sbjct: 410 YGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELA 469

Query: 241 ---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YV LSN+Y  L  W+    VR  MK   +RK  G SW+E+ G+IH+F   D SH
Sbjct: 470 PHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSH 529

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            +A+ I  +LG +  + +S G+ P T  V ++  E+E+   L +HSEK+A+A+G++ T+P
Sbjct: 530 SKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAP 589

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              ++I KNLRIC DCH+ +K+IS + +R IIVRDR RFH+FE G CSC DYW
Sbjct: 590 QHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 118/278 (42%), Gaps = 53/278 (19%)

Query: 1   MPDKDVVSWNSMIGGFVRNAR---FDEALRFFREML-SSKVEPDKFTFASVIYGCARLGA 56
           MP+ +   WN+++             EAL  F  ML   +V+P++FTF SV+  CAR   
Sbjct: 78  MPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASR 137

Query: 57  LNHAYWVHNLII-----------------------------------------------E 69
           L     +H LI+                                               +
Sbjct: 138 LREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDK 197

Query: 70  KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAI 129
           +K + N +L   +ID   + G I+ AK +FD + +  V  WN MISG A +G   +A  +
Sbjct: 198 RKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINL 257

Query: 130 FTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLG 189
           F +M+  N+ P+ +T + +L A +  G +E G K+      +  I+       A+VD+  
Sbjct: 258 FQEMQSSNIDPNYVTLVSVLPAIARIGALELG-KWIHLYAGKNKIEIDDVLGSALVDMYS 316

Query: 190 RAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
           + G I+EA  +  ++  + + + W A++ A     R E
Sbjct: 317 KCGSIDEALQVFETLP-KRNAITWSAIIGAFAMHGRAE 353


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/414 (45%), Positives = 274/414 (66%), Gaps = 7/414 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D +SW++MI G+++   F EAL  F +M   K+ P KF   SV+  CA LGAL+  
Sbjct: 262 MKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQG 321

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H       I+L+ +L  +L+DMY+KCG+I +A EVF+ +   +VS WNAMI G+A+H
Sbjct: 322 RWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMH 381

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A DA  +F+KM+   + P+ ITF+G+L AC+H GLV++G   F+ MR  Y ++PQ+EH
Sbjct: 382 GRAEDAIDLFSKMD---INPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEH 438

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG +VDLLGRAG + EA  +++S+  EP   VW ALL ACR    +ELGE     ++ + 
Sbjct: 439 YGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELE 498

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELA-GVIHQFKAGDRS 296
               G Y LLSN+Y    RW+    VR++MK++G++ + G S ++L  G +H+F  GD S
Sbjct: 499 PQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGS 558

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+ + I ++L  + +R + EG+ P    VL D+ EEEKE  ++ HSEKLA+ +G++ TS
Sbjct: 559 HPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTS 618

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PGT IRI KNLR+C DCHS  K+IS++  R IIVRDRIR+H F  G CSC D+W
Sbjct: 619 PGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 672



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 129/292 (44%), Gaps = 27/292 (9%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +V  WN MI   + N    +A+  + EM+ +   P+K+T+ +V+  C+  G +     VH
Sbjct: 101 NVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVH 160

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN-DVSVWNAMISGVAIHGLA 123
             +++  +  +  + ++ I MY+  G++  A+ + D      D   WNAMI G    G  
Sbjct: 161 AHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEV 220

Query: 124 ADASAIFTKMEMFNVLPDS---ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
             A       E+F  +PD     T+  +++  S CG+VE  R++FD M+ R  I      
Sbjct: 221 EAAR------ELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEIS----- 269

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELGE----VAI 233
           + AM+D   + G   EA  +   M  E   P   V  ++LSAC     L+ G      A 
Sbjct: 270 WSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAK 329

Query: 234 VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAG 285
            N  +L G     L +MY    R D A  V E M  K V      SW  + G
Sbjct: 330 RNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEV-----SSWNAMIG 376



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 40/223 (17%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D V WN+MI G++R    + A   F  M      PD+   ++               W  
Sbjct: 203 DAVCWNAMIDGYLRFGEVEAARELFEGM------PDRSMIST---------------W-- 239

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
                           A+I  +S+CG +++A+E FD ++  D   W+AMI G    G   
Sbjct: 240 ---------------NAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFM 284

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           +A  IF +M+   + P       +L+AC++ G +++GR +      R SIQ       ++
Sbjct: 285 EALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGR-WIHTYAKRNSIQLDGVLGTSL 343

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
           VD+  + G I+ A+ +   M+   +V  W A++       R E
Sbjct: 344 VDMYAKCGRIDLAWEVFEKMS-NKEVSSWNAMIGGLAMHGRAE 385



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 78/177 (44%), Gaps = 6/177 (3%)

Query: 56  ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCG-----KIQMAKEVFDTVQRNDVSVW 110
           +L+H    H LI+      +  ++ +L+  Y+          + +  VFD V++ +V +W
Sbjct: 46  SLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLW 105

Query: 111 NAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS 170
           N MI     +     A  ++ +M + +  P+  T+  +L ACS  G+V EG +   H+  
Sbjct: 106 NCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHL-V 164

Query: 171 RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
           ++ +        + + +    G + EA  ++     E D V W A++     F  +E
Sbjct: 165 KHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVE 221


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/413 (46%), Positives = 270/413 (65%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP + VVSWN MI G+ +N  F EA+  F+EM SS ++P+  T  SV+   AR+GAL   
Sbjct: 230 MPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELG 289

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H    + K+E++ +L +AL+DMYSKCG I  A +VF+T+ + +   W+A+I   A+H
Sbjct: 290 KWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMH 349

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A DA   F  M    V P+ + ++G+L+ACSH GLVEEGR +F HM     +QP++EH
Sbjct: 350 GRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEH 409

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG MVDLLGRAGH+EEA  LI +M +EPD V+W+ALL AC+  K L++GE     +  L 
Sbjct: 410 YGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELA 469

Query: 241 ---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YV LSN+Y  L  W+    VR  MK   +RK  G SW+E+ G+IH+F   D SH
Sbjct: 470 PHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSH 529

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            +A+ I  +LG +  + +S G+ P T  V ++  E+E+   L +HSEK+A+A+G++ T+P
Sbjct: 530 SKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAP 589

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              ++I KNLRIC DCH+ +K+IS + +R IIVRDR RFH+FE G CSC DYW
Sbjct: 590 QHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 116/278 (41%), Gaps = 53/278 (19%)

Query: 1   MPDKDVVSWNSMIGGFVRNAR---FDEALRFFREML-SSKVEPDKFTFASVIYGCARLGA 56
           MP+ +   WN+++             EAL  F  ML   +V+P++FTF SV+  CAR   
Sbjct: 78  MPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASR 137

Query: 57  LNHAYWVHNLII-----------------------------------------------E 69
           L     +H LI+                                               +
Sbjct: 138 LREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDK 197

Query: 70  KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAI 129
           +K + N +L   +ID   + G I+ AK +FD +    V  WN MISG A +G   +A  +
Sbjct: 198 RKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINL 257

Query: 130 FTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLG 189
           F +M+  N+ P+ +T + +L A +  G +E G K+      +  ++       A+VD+  
Sbjct: 258 FQEMQSSNIDPNYVTLVSVLPAIARIGALELG-KWIHLYAGKNKVEIDDVLGSALVDMYS 316

Query: 190 RAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
           + G I++A  +  ++    + + W A++ A     R E
Sbjct: 317 KCGSIDKALQVFETLPKR-NAITWSAIIGAFAMHGRAE 353


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/409 (48%), Positives = 267/409 (65%), Gaps = 3/409 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           ++  WN MI G V ++ ++EAL  F EM  S V+ DK T AS++  C  LGAL    W+H
Sbjct: 172 NLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLH 231

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             I ++KIE++  L  AL+DMY+KCG I+ A  VF  +   DV  W A+I G+A+ G   
Sbjct: 232 VYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGL 291

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
            A  +F +M+M  V PD+ITF+G+L ACSH GLV EG  YF+ M ++Y IQP +EHYG M
Sbjct: 292 KALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCM 351

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMG 241
           VD+LGRAG I EA  LI +M M PD  V   LLSACR    L + E A   ++ +    G
Sbjct: 352 VDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNG 411

Query: 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
           G YVLLSN+Y  +K W+ A+ +RE+M ++ ++K  G S +E+ GV+H+F  GD SHP++ 
Sbjct: 412 GTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSS 471

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
            I + L  +++R KS G++P    VL D+ E+EKE  L  HSEKLA+A+G+L T+PGT I
Sbjct: 472 EIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPI 531

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           R+ KNLR+C DCHS +K IS +  R IIVRDR RFH F  G CSC D+W
Sbjct: 532 RVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 580



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 116/273 (42%), Gaps = 47/273 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+    + NS+I G+       +A+ F++ M+   ++PD+FTF S+   C   G L   
Sbjct: 38  IPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC---GVLCEG 94

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA-- 118
             +H    +     +  +   L++MYS CG +  A++VFD +    V  W  MI   A  
Sbjct: 95  KQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQW 154

Query: 119 -------------------------IHGLAAD-----ASAIFTKMEMFNVLPDSITFLGL 148
                                    I+G   D     A ++F +M++  V  D +T   L
Sbjct: 155 DLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASL 214

Query: 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
           L AC+H G +E G K+      +  I+  +    A+VD+  + G IE A  +   M  E 
Sbjct: 215 LIACTHLGALELG-KWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMP-EK 272

Query: 209 DVVVWRAL----------LSACRTFKRLELGEV 231
           DV+ W AL          L A   F  +++ EV
Sbjct: 273 DVMTWTALIVGLAMCGQGLKALELFHEMQMSEV 305



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KDV++W ++I G     +  +AL  F EM  S+V+PD  TF  V+  C+  G +N  
Sbjct: 269 MPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEG 328

Query: 61  YWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
               N +  K  I+ +      ++DM  + G+I  A+++   +    D  V   ++S   
Sbjct: 329 IAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACR 388

Query: 119 IHG 121
           IHG
Sbjct: 389 IHG 391


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/413 (46%), Positives = 274/413 (66%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVV+W++MI G+ +  +  EAL  F EM  ++VEP+  T  SV+  CA LGAL   
Sbjct: 281 MQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETG 340

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH+ I  K++ L  IL  AL+D Y+KCG I  A E F+++   +   W A+I G+A +
Sbjct: 341 KWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATN 400

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F+ M   ++ P  +TF+G+L ACSH  LVEEGR++FD M   Y I+P+ EH
Sbjct: 401 GRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEH 460

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG +VDLLGRAG I+EAY  I +M +EP+ V+WRALLS+C   K +E+GE A   IV+++
Sbjct: 461 YGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLN 520

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               GDY+LLSN+Y  + +W  A  +R+ MK +G+ K+ G S +EL GV+ +F A D  H
Sbjct: 521 PSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEFFAEDSDH 580

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I + +  +I R K  G++P T  V ++V E EKE ++ HHSEKLA+A+G++K  P
Sbjct: 581 PQLKEIYQKVEEMIDRIKMAGYIPNTADVRLEVDEHEKEVSVSHHSEKLAIAFGLMKLDP 640

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+SKNLR+C DCHS  K+IS++  R I+VRDR RFH F+ G CSC DYW
Sbjct: 641 GATIRLSKNLRVCTDCHSATKLISKVYNREIVVRDRNRFHHFKDGTCSCNDYW 693



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +  VV WN++I  +++N  + E +  F+ ML   V  D+ T  SV+  C R+G      W
Sbjct: 182 ENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKW 241

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           V   + EK +  N  L  ALIDMY+KCG++  A+ +FD +Q  DV  W+AMISG      
Sbjct: 242 VAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQ 301

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A A+F++M++  V P+ +T + +L+AC+  G +E G+    ++R R  +   +    
Sbjct: 302 CREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIR-RKRLSLTIILGT 360

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKR 225
           A+VD   + G I++A     SM ++ +   W AL+    T  R
Sbjct: 361 ALVDFYAKCGCIDDAVEAFESMPVK-NSWTWTALIKGMATNGR 402



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 116/268 (43%), Gaps = 44/268 (16%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHA 60
           P      +N ++   +     ++AL  F EML  + V PD+ T A  +  C+R+  L+  
Sbjct: 79  PPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVG 138

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +    +++ +  +  + ++LI MY+ C  +  A+ +FD V+ N V +WNA+I+    +
Sbjct: 139 RGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKN 198

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTAC---------------------------- 152
           G   +   +F  M    V  D IT + ++TAC                            
Sbjct: 199 GNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLM 258

Query: 153 -------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
                  + CG + + R+ FD M+SR  +      + AM+    +A    EA  L + M 
Sbjct: 259 TALIDMYAKCGELGKARRLFDGMQSRDVVA-----WSAMISGYTQADQCREALALFSEMQ 313

Query: 206 M---EPDVVVWRALLSACRTFKRLELGE 230
           +   EP+ V   ++LSAC     LE G+
Sbjct: 314 LAEVEPNDVTMVSVLSACAVLGALETGK 341


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/411 (45%), Positives = 276/411 (67%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++DV+ W +M+  + +    D+A   F +M +S V P K T  S++  CA  GAL+   W
Sbjct: 321 NRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKW 380

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH+ I ++++E++ IL+ AL+DMY+KCG I  A  +F      D+ +WNA+I+G A+HG 
Sbjct: 381 VHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGY 440

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  IF +ME   V P+ ITF+GLL ACSH GLV EG+K F+ M   + + PQ+EHYG
Sbjct: 441 GEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYG 500

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            MVDLLGRAG ++EA+ +I SM ++P+ +VW AL++ACR  K  +LGE+A   ++ I   
Sbjct: 501 CMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPE 560

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             G  VL+SN+Y    RW  A  VR+ MK  G++K  G S +E+ G +H+F  GD+SHP+
Sbjct: 561 NCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQ 620

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
            + I+++L  + ++    G++P T  VL+++ EEEKE  L +HSEKLA+A+G++ T+P T
Sbjct: 621 IRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPST 680

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI KNLR+C+DCH+  K++S++  RVIIVRDR RFH F  G CSCGDYW
Sbjct: 681 PIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 731



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 114/258 (44%), Gaps = 47/258 (18%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA-----RLG 55
           M ++DVVSW++MI    RN  FD AL   REM   +V P +    S++   A     R+G
Sbjct: 185 MMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMG 244

Query: 56  ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE------------------ 97
              HAY + N        +    + AL+DMY+KCG + +A++                  
Sbjct: 245 KAMHAYVIRN---SNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIA 301

Query: 98  -------------VFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSIT 144
                        +FD+ Q  DV +W AM+S  A       A  +F +M    V P  +T
Sbjct: 302 GCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVT 361

Query: 145 FLGLLTACSHCGLVEEGR---KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
            + LL+ C+  G ++ G+    Y D  + R  +   L    A+VD+  + G I  A G +
Sbjct: 362 IVSLLSLCAVAGALDLGKWVHSYID--KERVEVDCILN--TALVDMYAKCGDINAA-GRL 416

Query: 202 TSMTMEPDVVVWRALLSA 219
               +  D+ +W A+++ 
Sbjct: 417 FIEAISRDICMWNAIITG 434



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 116/273 (42%), Gaps = 10/273 (3%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           WN +I  + +  +   AL  + ++     E D F   SV+  C ++        +H  ++
Sbjct: 92  WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
           +K ++ +  +  AL+ MY +C  ++ A+ VFD +   DV  W+ MI  ++ +     A  
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211

Query: 129 IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG-----A 183
           +  +M    V P  +  + ++   +    +  G+     M +        EH G     A
Sbjct: 212 LIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKA----MHAYVIRNSNNEHMGVPTTTA 267

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD 243
           ++D+  + GH+  A  L   +T +  VV W A+++ C    RLE       +        
Sbjct: 268 LLDMYAKCGHLGLARQLFNGLT-QKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMI 326

Query: 244 YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQ 276
           +  + + Y      D A N+ + M+  GVR ++
Sbjct: 327 WTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTK 359


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/413 (47%), Positives = 269/413 (65%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +KD+VSW+SMI G+  N    EAL  F +ML+    PD +    V+  CARLGAL   
Sbjct: 207 MLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELG 266

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W  NL+   +   N +L  ALIDMY+KCG++  A EVF  +++ D+ VWNA ISG+A+ 
Sbjct: 267 NWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMS 326

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +ME   + PD  TF+GLL AC+H GLV+EGR+YF+ M   +++ P++EH
Sbjct: 327 GHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEH 386

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDLLGRAG ++EA+ L+ SM ME + +VW ALL  CR  +  +L E  +  +  L 
Sbjct: 387 YGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIALE 446

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G+YVLLSN+Y    +W+ A  +R IM ++G++K  G SW+E+ GV+H+F  GD SH
Sbjct: 447 PSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLVGDTSH 506

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P ++ I   LG L++  K+ G++P T+ VL D+ EEEKE  +  HSEKLA+A+G++ T+P
Sbjct: 507 PLSEKIYAKLGELVKDLKASGYVPTTDYVLFDIEEEEKEHFIGCHSEKLAIAFGLISTAP 566

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             +IR+ KNLR+C DCH  IK ISR   R IIVRD  RFH F  G CSC DYW
Sbjct: 567 NDKIRVVKNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFNDGSCSCKDYW 619



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 114/256 (44%), Gaps = 42/256 (16%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + ++  +N+MI G V N  F E++  +  M    + PD FTF  ++  CARL        
Sbjct: 70  EPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIK 129

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA---------- 112
           +H L+++   E +  ++ +L+ +Y KCG I  A +VFD +   +V+ W A          
Sbjct: 130 LHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGK 189

Query: 113 ----------------------------MISGVAIHGLAADASAIFTKMEMFNVLPDSIT 144
                                       MI G A +GL  +A  +F KM      PD   
Sbjct: 190 CREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYA 249

Query: 145 FLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
            +G+L AC+  G +E G    + M R+ +   P L    A++D+  + G ++ A+ +   
Sbjct: 250 MVGVLCACARLGALELGNWASNLMDRNEFLGNPVLG--TALIDMYAKCGRMDSAWEVFRG 307

Query: 204 MTMEPDVVVWRALLSA 219
           M  + D+VVW A +S 
Sbjct: 308 MR-KKDIVVWNAAISG 322



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 72/166 (43%), Gaps = 2/166 (1%)

Query: 54  LGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAM 113
             +L H   VH  ++   ++ +  L   ++      G    +  +F   +  ++ ++N M
Sbjct: 20  FNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTM 79

Query: 114 ISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
           I G+ ++    ++  I+  M    + PDS TF  LL AC+     + G K    +  +  
Sbjct: 80  IHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIK-LHGLVVKAG 138

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            +       ++V L G+ G I+ A+ +   +  E +V  W A++S 
Sbjct: 139 CESDAFVNTSLVSLYGKCGFIDNAFKVFDDIP-EKNVAAWTAIISG 183


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/413 (47%), Positives = 270/413 (65%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D V+WNS+I GF  N   +EAL  +REM S  VEPD FT  S++  C  LGAL   
Sbjct: 197 MSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALG 256

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +++  +  N   S AL+D+YSKCG  + A++VFD ++   V  W ++I G+A++
Sbjct: 257 ERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVN 316

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  +F ++E   + P  ITF+G+L ACSHCG+++EG  YF  M+  Y I P++EH
Sbjct: 317 GLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEH 376

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           +G MVDLL RAG + +AY  I +M + P+ V+WR LL AC     LELGEVA   I RL 
Sbjct: 377 HGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLE 436

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               GD+VLLSN+Y   +RW   +NVR+IM  KGV+K+ G S +EL   +++F  GDRSH
Sbjct: 437 QRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSH 496

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+++    +L  + Q  K EG++P T  VL D+ EEEKE  L HH+EK+A+A+ ++ T P
Sbjct: 497 PQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPP 556

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IRI KNLR+C DCH  IK+IS++  R IIVRDR RFH F+ G CSC DYW
Sbjct: 557 GTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 108/214 (50%), Gaps = 3/214 (1%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++ +WN+MI GF  +     A+  F +M  +S + PD  TF  +    A+L  ++    +
Sbjct: 99  NIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGI 158

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H++++    +    +  +L+ MYS  G +  A +VF+ +   D   WN++I+G A++G+ 
Sbjct: 159 HSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMP 218

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  ++ +M    V PD  T + LL+AC   G +  G +   +M     +Q Q     A
Sbjct: 219 NEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQ-HASNA 277

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           ++DL  + G+  +A  +   M  E  VV W +L+
Sbjct: 278 LLDLYSKCGNFRDAQKVFDEME-ERSVVSWTSLI 310



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 83/206 (40%), Gaps = 37/206 (17%)

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
           HA+ + + +  +  + N  L  AL+ +      +  A ++F+ +Q  ++  WN MI G A
Sbjct: 55  HAFSIRHGVPPQNPDFNKHLIFALVSL---SAPMSFAAQIFNQIQAPNIFTWNTMIRGFA 111

Query: 119 IHGLAADASAIFTKMEMF-NVLPDSITFLGLLTACSHCGLVEEG--------RKYFDHMR 169
                + A  +F++M    ++LPD+ TF  L  A +    V  G        R  FD +R
Sbjct: 112 ESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLR 171

Query: 170 -------SRYSIQPQLEH---------------YGAMVDLLGRAGHIEEAYGLITSM--- 204
                    YS+   L                 + ++++     G   EA  L   M   
Sbjct: 172 FVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSE 231

Query: 205 TMEPDVVVWRALLSACRTFKRLELGE 230
            +EPD     +LLSAC     L LGE
Sbjct: 232 GVEPDGFTMVSLLSACVELGALALGE 257


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/413 (47%), Positives = 270/413 (65%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D V+WNS+I GF  N   +EAL  +REM S  VEPD FT  S++  C  LGAL   
Sbjct: 197 MSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALG 256

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +++  +  N   S AL+D+YSKCG  + A++VFD ++   V  W ++I G+A++
Sbjct: 257 ERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVN 316

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  +F ++E   + P  ITF+G+L ACSHCG+++EG  YF  M+  Y I P++EH
Sbjct: 317 GLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEH 376

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           +G MVDLL RAG + +AY  I +M + P+ V+WR LL AC     LELGEVA   I RL 
Sbjct: 377 HGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLE 436

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               GD+VLLSN+Y   +RW   +NVR+IM  KGV+K+ G S +EL   +++F  GDRSH
Sbjct: 437 QRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSH 496

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+++    +L  + Q  K EG++P T  VL D+ EEEKE  L HH+EK+A+A+ ++ T P
Sbjct: 497 PQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPP 556

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IRI KNLR+C DCH  IK+IS++  R IIVRDR RFH F+ G CSC DYW
Sbjct: 557 GTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 108/214 (50%), Gaps = 3/214 (1%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++ +WN+MI GF  +     A+  F +M  +S + PD  TF  +    A+L  ++    +
Sbjct: 99  NIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGI 158

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H++++    +    +  +L+ MYS  G  + A +VF+ +   D   WN++I+G A++G+ 
Sbjct: 159 HSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMP 218

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  ++ +M    V PD  T + LL+AC   G +  G +   +M     +Q Q     A
Sbjct: 219 NEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQ-HASNA 277

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           ++DL  + G+  +A  +   M  E  VV W +L+
Sbjct: 278 LLDLYSKCGNFRDAQKVFDEME-ERSVVSWTSLI 310



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 37/206 (17%)

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
           HA+ + + +  +  + N  L  AL+ +      +  A ++F+ +Q  ++  WN MI G A
Sbjct: 55  HAFSIRHGVPPQNPDFNKHLIFALVSL---SAPMSFAAQIFNQIQAPNIFTWNTMIRGFA 111

Query: 119 IHGLAADASAIFTKMEMF-NVLPDSITFLGLLTACSHCGLVEEG--------RKYFDHMR 169
                + A  +F++M    ++LPD+ TF  L  A +    V  G        R  FD +R
Sbjct: 112 ESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLR 171

Query: 170 -----------------SRYSIQPQLEH-----YGAMVDLLGRAGHIEEAYGLITSM--- 204
                            S Y +   + +     + ++++     G   EA  L   M   
Sbjct: 172 FVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSE 231

Query: 205 TMEPDVVVWRALLSACRTFKRLELGE 230
            +EPD     +LLSAC     L LGE
Sbjct: 232 GVEPDGFTMVSLLSACVELGALALGE 257


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/411 (45%), Positives = 276/411 (67%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++DV+ W +M+  + +    D+A   F +M +S V P K T  S++  CA  GAL+   W
Sbjct: 361 NRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKW 420

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH+ I ++++E++ IL+ AL+DMY+KCG I  A  +F      D+ +WNA+I+G A+HG 
Sbjct: 421 VHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGY 480

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  IF +ME   V P+ ITF+GLL ACSH GLV EG+K F+ M   + + PQ+EHYG
Sbjct: 481 GEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYG 540

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            MVDLLGRAG ++EA+ +I SM ++P+ +VW AL++ACR  K  +LGE+A   ++ I   
Sbjct: 541 CMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPE 600

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             G  VL+SN+Y    RW  A  VR+ MK  G++K  G S +E+ G +H+F  GD+SHP+
Sbjct: 601 NCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQ 660

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
            + I+++L  + ++    G++P T  VL+++ EEEKE  L +HSEKLA+A+G++ T+P T
Sbjct: 661 IRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPST 720

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI KNLR+C+DCH+  K++S++  RVIIVRDR RFH F  G CSCGDYW
Sbjct: 721 PIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 771



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 119/225 (52%), Gaps = 12/225 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA-----RLG 55
           M ++DVVSW++MI    RN  FD AL   REM   +V P +    S++   A     R+G
Sbjct: 155 MMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMG 214

Query: 56  ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
              HAY + N        +    + AL+DMY+KCG + +A+++F+ + +  V  W AMI+
Sbjct: 215 KAMHAYVIRN---SNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIA 271

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSI 174
           G        + + +F +M+  N+ P+ IT L L+  C   G ++ G++   + +R+ +S+
Sbjct: 272 GCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSV 331

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              L    A+VD+ G+   I  A  L  S T   DV++W A+LSA
Sbjct: 332 SLALA--TALVDMYGKCSDIRNARALFDS-TQNRDVMIWTAMLSA 373



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 111/222 (50%), Gaps = 8/222 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  K VVSW +MI G +R+ R +E  + F  M    + P++ T  S+I  C   GAL   
Sbjct: 258 LTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLG 317

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I+     ++  L+ AL+DMY KC  I+ A+ +FD+ Q  DV +W AM+S  A  
Sbjct: 318 KQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQA 377

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---KYFDHMRSRYSIQPQ 177
                A  +F +M    V P  +T + LL+ C+  G ++ G+    Y D  + R  +   
Sbjct: 378 NCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYID--KERVEVDCI 435

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           L    A+VD+  + G I  A G +    +  D+ +W A+++ 
Sbjct: 436 LN--TALVDMYAKCGDINAA-GRLFIEAISRDICMWNAIITG 474



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 86/194 (44%), Gaps = 10/194 (5%)

Query: 41  KFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD 100
            F   SV+  C ++        +H  +++K ++ +  +  AL+ MY +C  ++ A+ VFD
Sbjct: 94  NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFD 153

Query: 101 TVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE 160
            +   DV  W+ MI  ++ +     A  +  +M    V P  +  + ++   +    +  
Sbjct: 154 KMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRM 213

Query: 161 GRKYFDHMRSRYSIQPQLEHYG-----AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRA 215
           G+     M +        EH G     A++D+  + GH+  A  L   +T +  VV W A
Sbjct: 214 GKA----MHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLT-QKTVVSWTA 268

Query: 216 LLSACRTFKRLELG 229
           +++ C    RLE G
Sbjct: 269 MIAGCIRSNRLEEG 282


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/413 (48%), Positives = 273/413 (66%), Gaps = 6/413 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++++VSWNS++ GF  N R +E L  FRE L + + PD FT  SV+  CA +GAL     
Sbjct: 185 ERNLVSWNSVMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRR 244

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT--VQRNDVSVWNAMISGVAIH 120
           VH    +  +  N  +  ALID+Y+KCG ++ A +VF+   V R  VS W ++I G+A +
Sbjct: 245 VHVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVS-WTSLIVGLAGN 303

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA  +F  ME   ++P  IT +G+L ACSHCGLV++G +YF+ M+ +Y I P +EH
Sbjct: 304 GFGKDALELFGLMERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEH 363

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
            G MVDLLGRAG +EEA+  IT+M +EP+ VVWR LL AC   K+LELGE A   +V + 
Sbjct: 364 LGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGACAMHKKLELGEAAWARLVELD 423

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               GDYVLLSN+Y  + RW  A  +R+ M   GVRK+ G S +EL   +++F  GDRSH
Sbjct: 424 PGHSGDYVLLSNLYAAVGRWADAHVLRKTMATHGVRKNPGHSLVELRNSVYEFVMGDRSH 483

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE+  I + L  + +R + +G++P T  VL D+ EEEKE  L +HSE+LA+A+ +LK+ P
Sbjct: 484 PESDQIYQTLAEIAERLRCQGYVPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLP 543

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G+ IRI KNLR+C DCH  IK+IS++  R IIVRDR RFH F+GG CSC DYW
Sbjct: 544 GSPIRIVKNLRMCGDCHLVIKLISKVYDREIIVRDRSRFHHFKGGECSCKDYW 596



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 121/257 (47%), Gaps = 12/257 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +PD D  S N+++     +A    AL   R  L+    PD  T+  ++  C RL AL   
Sbjct: 83  LPDPDPFSLNTVLRIAASSAHPRIALALHRRRLAP---PDTHTYPPLLQACTRLLALREG 139

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV---QRNDVSVWNAMISGV 117
             +H    +  +     +  +L+  Y  CG  + A  VFD +   +RN VS WN++++G 
Sbjct: 140 ESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVS-WNSVMNGF 198

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           A +G   +   IF +    +++PD  T + +LTAC+  G +  GR+   H+ +       
Sbjct: 199 AANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRRV--HVFASKVGLVG 256

Query: 178 LEHYG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS--ACRTFKRLELGEVAIV 234
             H G A++DL  + G +E+A+ +   M +   VV W +L+   A   F +  L    ++
Sbjct: 257 NSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDALELFGLM 316

Query: 235 NISRLMGGDYVLLSNMY 251
              RL+  D  ++  +Y
Sbjct: 317 ERERLIPTDITMVGVLY 333


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/413 (46%), Positives = 266/413 (64%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D V WN MI G+ +N   +EAL  FR ML +K +P++ T  SV+  C +LGAL   
Sbjct: 216 MEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESG 275

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH+ I    I+ N  +  AL+DMYSKCG ++ A+ VFD +   DV  WN+MI G A+H
Sbjct: 276 RWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMH 335

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G + +A  +F  M    + P +ITF+G+L+AC H G V EG   F+ M+  Y I+P++EH
Sbjct: 336 GFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEH 395

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI---VNIS 237
           YG MV+LLGRAGH+E+AY L+ +M +EPD V+W  LL ACR   ++ LGE  +   V+ +
Sbjct: 396 YGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQN 455

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y+LLSN+Y  +  WD    +R +MK  GV+K  G S +E+   +H+F AG  +H
Sbjct: 456 LANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNH 515

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I  +L  +    KS G+ P T++VL D+ E EKE +L  HSEKLA+A+G++ T P
Sbjct: 516 PKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQP 575

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT I+I KNLR+C DCH   K+IS++  R I+VRDR RFH F  G CSCGDYW
Sbjct: 576 GTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 114/246 (46%), Gaps = 37/246 (15%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGC----------- 51
           +  V  W ++I G       ++AL F+ +ML+  VEP+ FTF+S++  C           
Sbjct: 90  NPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCPIEPGKALHSQ 149

Query: 52  --------------------ARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK 91
                               AR G +  A  + + + EK +    +   A++  Y+K G+
Sbjct: 150 AVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSL----VSLTAMLTCYAKHGE 205

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           +  A+ +FD ++  D   WN MI G   +G+  +A  +F +M      P+ +T L +L+A
Sbjct: 206 LDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSA 265

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           C   G +E GR    ++ +   IQ  +    A+VD+  + G +E+A  L+     + DVV
Sbjct: 266 CGQLGALESGRWVHSYIENN-GIQFNVHVGTALVDMYSKCGSLEDAR-LVFDKIDDKDVV 323

Query: 212 VWRALL 217
            W +++
Sbjct: 324 AWNSMI 329



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 6/176 (3%)

Query: 56  ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
            ++H   +H ++    ++ + IL+  L   Y+  G++  +  +F   Q   V  W A+I 
Sbjct: 42  TISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIH 101

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           G A+ GL   A   + +M    V P++ TF  +L  C     +E G K       +    
Sbjct: 102 GHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEPG-KALHSQAVKLGFD 156

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV 231
             L     ++D+  R G +  A  L  +M  E  +V   A+L+       L+   V
Sbjct: 157 SDLYVRTGLLDVYARGGDVVSAQQLFDTMP-EKSLVSLTAMLTCYAKHGELDAARV 211


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/413 (46%), Positives = 266/413 (64%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D V WN MI G+ +N   +EAL  FR ML +K +P++ T  SV+  C +LGAL   
Sbjct: 150 MEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESG 209

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH+ I    I+ N  +  AL+DMYSKCG ++ A+ VFD +   DV  WN+MI G A+H
Sbjct: 210 RWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMH 269

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G + +A  +F  M    + P +ITF+G+L+AC H G V EG   F+ M+  Y I+P++EH
Sbjct: 270 GFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEH 329

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI---VNIS 237
           YG MV+LLGRAGH+E+AY L+ +M +EPD V+W  LL ACR   ++ LGE  +   V+ +
Sbjct: 330 YGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQN 389

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y+LLSN+Y  +  WD    +R +MK  GV+K  G S +E+   +H+F AG  +H
Sbjct: 390 LANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNH 449

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I  +L  +    KS G+ P T++VL D+ E EKE +L  HSEKLA+A+G++ T P
Sbjct: 450 PKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQP 509

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT I+I KNLR+C DCH   K+IS++  R I+VRDR RFH F  G CSCGDYW
Sbjct: 510 GTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 562



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 97/198 (48%), Gaps = 10/198 (5%)

Query: 20  ARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILS 79
            R D ++  F         P  F + ++I+G A  G +  A  + + + EK +    +  
Sbjct: 76  GRLDYSVALF----GRTQNPSVFFWTAIIHGHALRGDVVSAQQLFDTMPEKSL----VSL 127

Query: 80  AALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVL 139
            A++  Y+K G++  A+ +FD ++  D   WN MI G   +G+  +A  +F +M      
Sbjct: 128 TAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAK 187

Query: 140 PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199
           P+ +T L +L+AC   G +E GR    ++ +   IQ  +    A+VD+  + G +E+A  
Sbjct: 188 PNEVTVLSVLSACGQLGALESGRWVHSYIENN-GIQFNVHVGTALVDMYSKCGSLEDAR- 245

Query: 200 LITSMTMEPDVVVWRALL 217
           L+     + DVV W +++
Sbjct: 246 LVFDKIDDKDVVAWNSMI 263


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/413 (46%), Positives = 272/413 (65%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +K+ +SW++MI G+++   + EAL  F  M   ++ P KF  +SV+  CA LGAL+  
Sbjct: 253 MKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQG 312

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H  +       + +L  AL+DMY+KCG++ MA +VF+ +++ +V  WNAMI G+ +H
Sbjct: 313 RWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMH 372

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A DA  +F KM+     P+ IT LG+L+AC+H G+V+EG + F+ M   Y I+P +EH
Sbjct: 373 GRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEH 432

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG +VDLLGRAG + EA  ++ SM MEP   VW ALL ACR    +ELGE     ++ + 
Sbjct: 433 YGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLELE 492

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y LLSN+Y    RWD   NVR++MK++GV+ S G S ++  GV+H+FK GD SH
Sbjct: 493 PQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSH 552

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I  +L ++I+R K EGF P T  VL D+ EEEKE  L +HSEKLA+A+G++ T P
Sbjct: 553 PQMKNIYLMLKNMIKRLKMEGFSPNTSQVLFDIEEEEKEAELQYHSEKLAIAFGLINTKP 612

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT I + KNLR+C DCHS  K+IS++  R IIVRDR R+H F+ G CSC D+W
Sbjct: 613 GTTIHVVKNLRMCEDCHSAFKLISQVYDREIIVRDRARYHHFKTGTCSCKDFW 665



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 135/280 (48%), Gaps = 18/280 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+ +V  +N +I G ++N    +A+  + +M+ +   P+KFT+ ++   C    A    
Sbjct: 90  VPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEG 149

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +I++ +  +  + +A I MY   G+++ A+ +      +DV  +NAMI G    
Sbjct: 150 VQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKC 209

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F  ME  NV   ++   G+    + CG++EE R+ F+ M+ +  I      
Sbjct: 210 GEVEAAKELFWSMEDKNVGSWNVMVSGM----AKCGMIEEARELFNEMKEKNEIS----- 260

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELGE--VAIVN 235
           + AM+D   + G+ +EA  +   M  E   P   V  ++L+AC     L+ G    A VN
Sbjct: 261 WSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVN 320

Query: 236 ISRLMGGDYVL---LSNMYCYLKRWDTAENVREIMKKKGV 272
            +     D VL   L +MY    R D A +V E M+KK V
Sbjct: 321 -NNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEV 359



 Score = 38.9 bits (89), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 76/178 (42%), Gaps = 9/178 (5%)

Query: 56  ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKC--GKIQMAKEVFDTVQRNDVSVWNAM 113
           +L+H   VH + +      +  +S  L+  Y+      +  A +VF+ V   +V V+N +
Sbjct: 42  SLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNII 101

Query: 114 ISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
           I G   +     A   + KM + +  P+  T+  L  AC+     EEG +   H+  +  
Sbjct: 102 IKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHV-IKQG 160

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV 231
           +   +    A + + G  G +E A  ++       DV+ + A++        L+ GEV
Sbjct: 161 LSGDVHIRSAGIQMYGSFGEVEGARRMLGE-DGNSDVICFNAMIDG-----YLKCGEV 212


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/412 (48%), Positives = 268/412 (65%), Gaps = 4/412 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +KD++SWN MIGG+     + EAL  FR+M  S VEP+  TF S++  CA LGAL+   W
Sbjct: 327 EKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKW 386

Query: 63  VHNLIIEKKIEL-NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           +H  I +K + L N  L  +LIDMY+KCG I+ AK+VF  ++   +  WNAMISG+A+HG
Sbjct: 387 IHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHG 446

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
            A  A  +F +M      PD ITF+G+L+ACSH GLVE GR+ F  M   Y I P+L+HY
Sbjct: 447 HANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHY 506

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL-- 239
           G M+DLLGRAG  +EA  L+ +M M+PD  +W +LL ACR    +ELGE A  ++  L  
Sbjct: 507 GCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEP 566

Query: 240 -MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
              G YVLLSN+Y    RWD    +R  +  KG++K  G S +E+  V+H+F  GD+ H 
Sbjct: 567 ENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHE 626

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           ++Q I K+L  + Q  +  G +P T  VL D+ EE KEG+L HHSEKLA+A+G++ T P 
Sbjct: 627 QSQDIYKMLDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPE 686

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T IRI KNLR+C +CHS IK+IS++  R II RDR RFH F+ G CSC DYW
Sbjct: 687 TTIRIVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHFKDGSCSCMDYW 738



 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 127/219 (57%), Gaps = 1/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P +D VSWN+MI G+ ++ RF+EAL FF+EM  + V P++ T  +V+  CA+ G+L   
Sbjct: 224 IPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELG 283

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WV + I +  +  N  L  ALIDMYSKCG +  A+++F+ +   D+  WN MI G +  
Sbjct: 284 NWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHM 343

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A A+F KM+  NV P+ +TF+ +L AC++ G ++ G+    ++  ++        
Sbjct: 344 NSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSL 403

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           + +++D+  + G+IE A  +   M  +  +  W A++S 
Sbjct: 404 WTSLIDMYAKCGNIEAAKQVFAGMKPK-SLGSWNAMISG 441



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 112/240 (46%), Gaps = 33/240 (13%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           WN+MI G   ++    A+ F+  ML   VEP+ +TF  ++  CA++GA      +H  ++
Sbjct: 100 WNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVL 159

Query: 69  EKKIELNFILSAALIDMYSKCGKIQM-------------------------------AKE 97
           +  +E +  +  +LI+MY++ G++                                 A+ 
Sbjct: 160 KLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARR 219

Query: 98  VFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL 157
           +F+ +   D   WNAMI+G A  G   +A A F +M+  NV P+  T + +L+AC+  G 
Sbjct: 220 LFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGS 279

Query: 158 VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           +E G  +       + +   L    A++D+  + G +++A  L   +  E D++ W  ++
Sbjct: 280 LELG-NWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGIC-EKDIISWNVMI 337



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K + SWN+MI G   +   + AL  FR+M     EPD  TF  V+  C+  G +   
Sbjct: 427 MKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELG 486

Query: 61  YWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
               + ++E   I         +ID+  + G    A+ +   ++ + D ++W +++    
Sbjct: 487 RQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACR 546

Query: 119 IHG 121
           +HG
Sbjct: 547 VHG 549



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 79/159 (49%), Gaps = 4/159 (2%)

Query: 63  VHNLIIEKKIELNFILSAALIDM--YSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           +H+ II+  +       + LI+    S  G +  A  +F+++++ +  +WN MI G ++ 
Sbjct: 51  IHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLS 110

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                A   + +M +  V P+S TF  LL +C+  G  +EG++   H+  +  ++     
Sbjct: 111 SSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVL-KLGLESDPFV 169

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           + +++++  + G +  A  L+ S +   D V + AL++ 
Sbjct: 170 HTSLINMYAQNGELGYAE-LVFSKSSLRDAVSFTALITG 207


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/413 (47%), Positives = 270/413 (65%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVV+W++MI G+ ++ R  EAL  F EM  ++V P+  T  SV+  CA LGAL   
Sbjct: 333 MHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETG 392

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH+ I  K + L  IL  AL+D Y+KCG I+ A + F+++   +   W A+I G+A +
Sbjct: 393 KWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASN 452

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G + +A  +F+ M   N+ P  +TF+G+L ACSH  LVEEGR++F  M   Y I P++EH
Sbjct: 453 GRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEH 512

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDLLGRAG I+EAY  I +M +EP+ VVWRALLSAC   K +E+GE A   IV + 
Sbjct: 513 YGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLD 572

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G+Y+LLSN Y  + +W  A  VR+ MK+KGV K  G S +EL G I +F A D  H
Sbjct: 573 PCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEH 632

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+   I + +  +I+  K  G++P T    +DV E EK+ ++ HHSEKLA+A+G++K+ P
Sbjct: 633 PQLTEIYEKVHEMIENIKMVGYIPNTADARLDVDEYEKQVSVSHHSEKLAIAFGLMKSRP 692

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+SKNLR+C DCHS  K+IS++  R IIVRDR RFH F+ GLCSC DYW
Sbjct: 693 GATIRLSKNLRVCIDCHSATKLISKVYNREIIVRDRNRFHHFKDGLCSCNDYW 745



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 123/229 (53%), Gaps = 6/229 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K V++WN+MI G+V+N  + E +  F+ ML  +   D+ T  SV   C RLG  N   W+
Sbjct: 235 KGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWI 294

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
                EK +  +  L+ AL+DMY+KCG++  A+ +FD +   DV  W+AMISG       
Sbjct: 295 AEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRC 354

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A AIF +M+   V P+ +T + +L+AC+  G +E G+    ++R R  +   +    A
Sbjct: 355 REALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIR-RKDLPLTVILGTA 413

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL----SACRTFKRLEL 228
           +VD   + G I++A     SM +  +   W AL+    S  R+ + LEL
Sbjct: 414 LVDFYAKCGCIKDAVKAFESMPVR-NTWTWTALIKGMASNGRSREALEL 461



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 106/218 (48%), Gaps = 3/218 (1%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHA 60
           P +   S+N +I  F+R    ++AL  F EML  + V PD+ T A+ +  C+R+  L+  
Sbjct: 131 PPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVG 190

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V     ++   ++  +  +LI MY+ CG +  A  +F TVQ   V  WNAMI+G   +
Sbjct: 191 RGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKN 250

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +   +F  M       D +T L + TAC   G    G+   ++   +  ++ +   
Sbjct: 251 GDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSR-NL 309

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
             A+VD+  + G +++A  L   M    DVV W A++S
Sbjct: 310 ATALVDMYAKCGELDKARRLFDRMHSR-DVVAWSAMIS 346


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/411 (47%), Positives = 269/411 (65%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K++ SWN MI G V ++ ++EAL  FREM +  ++ DK T AS++  C  LGAL    W
Sbjct: 250 EKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKW 309

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  I +++I+++  L  AL+DMY+KCG I+ A +VF  +   DV  W A+I G+A+ G 
Sbjct: 310 LHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQ 369

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A +A   F +M +  V PD+ITF+G+L ACSH G V+EG  +F+ M   Y IQP +EHYG
Sbjct: 370 AENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYG 429

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            +VD+LGRAG I EA  LI SM M PD  V   LL ACR    LE  E A   ++ I   
Sbjct: 430 GLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPY 489

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             G YVLLSN+Y   K+W+ A+  RE+M ++G+RK  G S +E+ GV+H+F  GD SH +
Sbjct: 490 HSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQ 549

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           +  I+++L  +I + K+ G++P    VL D++EEEKE  L  HSEKLA+A+G+L TS GT
Sbjct: 550 SSEINEMLEDMISKLKNAGYVPDKSEVLFDMAEEEKETELSLHSEKLAIAFGLLSTSVGT 609

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IR+ KNLRIC DCHS  K+IS+L  R IIVRDR RFH F+ G CSC  +W
Sbjct: 610 PIRVVKNLRICSDCHSATKLISKLYNREIIVRDRNRFHHFKDGTCSCRGFW 660



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 118/218 (54%), Gaps = 3/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           M DK VVSW +MIG   +  + +EA+R F  M+ S+ V+P++ T  +V+  CAR   L  
Sbjct: 146 MEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAM 205

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  I E     + +L+  L+D+Y KCG +Q+A+++FD  Q  ++  WN MI+G   
Sbjct: 206 VKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVE 265

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
                +A  +F +M+   +  D +T   LL AC+H G +E G+    +++ +  I   + 
Sbjct: 266 DSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIK-KQRIDVDVA 324

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              A+VD+  + G IE A  +   M  E DV+ W AL+
Sbjct: 325 LGTALVDMYAKCGSIETAIQVFHEMP-EKDVMTWTALI 361



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 109/269 (40%), Gaps = 47/269 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+    + NS+I G        EAL F++EM+   + PD++TF S+   C      +  
Sbjct: 48  IPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRN---SSEG 104

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H    +     +      L++MYS CG +  A++VFD ++   V  W  MI   A  
Sbjct: 105 KQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQW 164

Query: 121 GLAADASAIFTK-MEMFNVLPDSITFLGLLTACSH------------------------- 154
               +A  +F + M+  NV P+ +T + +LTAC+                          
Sbjct: 165 DQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVL 224

Query: 155 ----------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
                     CG V+  R  FD  + +      L  +  M++      + EEA  L   M
Sbjct: 225 NTVLMDVYCKCGCVQLARDLFDKAQEK-----NLFSWNIMINGHVEDSNYEEALLLFREM 279

Query: 205 T---MEPDVVVWRALLSACRTFKRLELGE 230
               ++ D V   +LL AC     LELG+
Sbjct: 280 QTKGIKGDKVTMASLLLACTHLGALELGK 308



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KDV++W ++I G     + + AL++F EM    V+PD  TF  V+  C+  G ++  
Sbjct: 349 MPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEG 408

Query: 61  YWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
               N + +   I+        L+D+  + G+I  A+E+  ++    D  V   ++    
Sbjct: 409 ISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACR 468

Query: 119 IHG 121
           IHG
Sbjct: 469 IHG 471


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 183/413 (44%), Positives = 276/413 (66%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVV+W++MI G+ + +R  EAL  F EM  + ++P++ T  S++  CA LGAL   
Sbjct: 286 MDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETG 345

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH  I +K+++L   L  AL+D Y+KCG ++ + EVF  +   +V  W  +I G+A +
Sbjct: 346 KWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASN 405

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A   F  M   NV P+ +TF+G+L+ACSH GLV+EGR  F  M   + I+P++EH
Sbjct: 406 GQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEH 465

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVD+LGRAG IEEA+  I +M ++P+ V+WR LL++C+  K +E+GE +   ++ + 
Sbjct: 466 YGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILE 525

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               GDY+LLSN+Y  + RW+ A  VR  MK+KG++K+ G S +EL GVIH+F A D  H
Sbjct: 526 PTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVH 585

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            +++ I   +  ++++ KS G++P T    +D  E++KE ++ HHSEKLA+A+G++K+ P
Sbjct: 586 SQSEEIYNAIEDMMKQIKSAGYVPNTAEARLDAEEDDKESSVSHHSEKLAIAFGLIKSPP 645

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IRI+KNLR+C DCH+  K++S++  R I+VRDR RFH F+ G CSC DYW
Sbjct: 646 GTTIRITKNLRVCTDCHNATKLVSKVFNREIVVRDRTRFHHFKEGSCSCNDYW 698



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 123/220 (55%), Gaps = 4/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++V +WNSM  G+ ++  ++E ++ F EML   +  D+ T  SV+  C RL  L   
Sbjct: 185 MSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELG 244

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W++  + EK ++ N  L  +L+DMY+KCG++  A+ +FD + R DV  W+AMISG +  
Sbjct: 245 EWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQA 304

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR-KYFDHMRSRYSIQPQLE 179
               +A  +F +M+  N+ P+ IT + +L++C+  G +E G+  +F   + R  +   L 
Sbjct: 305 SRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLG 364

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A++D   + G +E +  +   M ++ +V+ W  L+  
Sbjct: 365 --TALMDFYAKCGSVESSIEVFGKMPVK-NVLSWTVLIQG 401



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 112/217 (51%), Gaps = 2/217 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + D  ++N MI GF       EA+  F+EM  + V+PD+FTF  ++  C+RL AL+    
Sbjct: 86  EPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQ 145

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H LI++     +  +   LI MY+ CG++++A+ VFD +   +V  WN+M +G    G 
Sbjct: 146 IHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGN 205

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +   +F +M   ++  D +T + +LTAC     +E G ++ +       ++       
Sbjct: 206 WEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELG-EWINRYVEEKGLKGNPTLIT 264

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++VD+  + G ++ A  L   M    DVV W A++S 
Sbjct: 265 SLVDMYAKCGQVDTARRLFDQMDRR-DVVAWSAMISG 300



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 110/272 (40%), Gaps = 56/272 (20%)

Query: 47  VIYGCARLGALN--HAYWVHN-LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           ++  C  +  LN  HA+ +   L+++ K+  N + SAA++   S    +  A  +F  + 
Sbjct: 30  ILEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTS----MDYAVSIFRQID 85

Query: 104 RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS---------- 153
             D   +N MI G  +     +A  +F +M   +V PD  TF  +L  CS          
Sbjct: 86  EPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQ 145

Query: 154 -------------------------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLL 188
                                    +CG VE  R+ FD M  R      +  + +M    
Sbjct: 146 IHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSER-----NVRTWNSMFAGY 200

Query: 189 GRAGHIEEAYGLITSMTMEPDV----VVWRALLSACRTFKRLELGE--VAIVNISRLMGG 242
            ++G+ EE   L   M +E D+    V   ++L+AC     LELGE     V    L G 
Sbjct: 201 TKSGNWEEVVKLFHEM-LELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGN 259

Query: 243 DYVLLS--NMYCYLKRWDTAENVREIMKKKGV 272
             ++ S  +MY    + DTA  + + M ++ V
Sbjct: 260 PTLITSLVDMYAKCGQVDTARRLFDQMDRRDV 291


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 182/413 (44%), Positives = 269/413 (65%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D +SW+SM+ G++   R+ EAL  F++M   +  P +F  +SV+  C+ +GA++  
Sbjct: 254 MSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQG 313

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH  +    I+L+ +L  AL+DMY+KCG++ M  EVF+ ++  ++  WNAMI G+AIH
Sbjct: 314 RWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIH 373

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A DA  +F+K++   + P+ IT +G+LTAC+H G V++G + F  MR  Y + P+LEH
Sbjct: 374 GRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEH 433

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDLLGR+G   EA  LI SM M+P+  VW ALL ACR     +L E     ++ + 
Sbjct: 434 YGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELE 493

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y  + R+D    +R++MK +G++   G S ++L G +H+FK GD SH
Sbjct: 494 PQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSH 553

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I + L  + +R +  G  P T  VL D+ EEEKE  + +HSEKLA+A+G++ T P
Sbjct: 554 PQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLP 613

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  I I KNLR+C DCHS  K+IS++  R IIVRDR+R+H F+ G CSC D+W
Sbjct: 614 GKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 132/279 (47%), Gaps = 18/279 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+ +V  WN +I G + N +  +A+ F+  M+     P+KFT+ ++   C+   A+   
Sbjct: 93  IPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSVAQAVQEG 151

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++  I  +  + +A I MY+  G+++ A+++F + + +DV  WN MI G    
Sbjct: 152 RQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGE-SDVVCWNTMIDGYLKC 210

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G+   A  +F +M + N+   ++   GL       G + + RK FD M  R  I      
Sbjct: 211 GVLEAAKGLFAQMPVKNIGSWNVMINGLAKG----GNLGDARKLFDEMSERDEIS----- 261

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELGEVAIVNIS 237
           + +MVD    AG  +EA  +   M  E   P   +  ++L+AC     ++ G      + 
Sbjct: 262 WSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLK 321

Query: 238 R-LMGGDYVL---LSNMYCYLKRWDTAENVREIMKKKGV 272
           R  +  D VL   L +MY    R D    V E MK++ +
Sbjct: 322 RNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREI 360



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 6/174 (3%)

Query: 48  IYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKC--GKIQMAKEVFDTVQRN 105
           ++    + +L +   +H L++      +  +S AL+  Y+         A +VF ++   
Sbjct: 37  LFDSKSITSLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNP 96

Query: 106 DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYF 165
           +V +WN +I G   +     A   + +M + +  P+  T+  L  ACS    V+EGR+  
Sbjct: 97  NVFIWNIVIKGCLENNKLFKAIYFYGRM-VIDARPNKFTYPTLFKACSVAQAVQEGRQIH 155

Query: 166 DHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            H+  ++ I   +    A + +    G +E+A  +  S   E DVV W  ++  
Sbjct: 156 GHV-VKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYS--GESDVVCWNTMIDG 206


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 182/413 (44%), Positives = 269/413 (65%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D +SW+SM+ G++   R+ EAL  F++M   +  P +F  +SV+  C+ +GA++  
Sbjct: 254 MSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQG 313

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH  +    I+L+ +L  AL+DMY+KCG++ M  EVF+ ++  ++  WNAMI G+AIH
Sbjct: 314 RWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIH 373

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A DA  +F+K++   + P+ IT +G+LTAC+H G V++G + F  MR  Y + P+LEH
Sbjct: 374 GRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEH 433

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDLLGR+G   EA  LI SM M+P+  VW ALL ACR     +L E     ++ + 
Sbjct: 434 YGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELE 493

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y  + R+D    +R++MK +G++   G S ++L G +H+FK GD SH
Sbjct: 494 PQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSH 553

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I + L  + +R +  G  P T  VL D+ EEEKE  + +HSEKLA+A+G++ T P
Sbjct: 554 PQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLP 613

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  I I KNLR+C DCHS  K+IS++  R IIVRDR+R+H F+ G CSC D+W
Sbjct: 614 GKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 132/279 (47%), Gaps = 18/279 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+ +V  WN +I G + N +  +A+ F+  M+     P+KFT+ ++   C+   A+   
Sbjct: 93  IPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSVAQAVQEG 151

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++  I  +  + +A I MY+  G+++ A+++F + + +DV  WN MI G    
Sbjct: 152 RQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGE-SDVVCWNTMIDGYLKC 210

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G+   A  +F +M + N+   ++   GL       G + + RK FD M  R  I      
Sbjct: 211 GVLEAAKGLFAQMPVKNIGSWNVMINGLAKG----GNLGDARKLFDEMSERDEIS----- 261

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELGEVAIVNIS 237
           + +MVD    AG  +EA  +   M  E   P   +  ++L+AC     ++ G      + 
Sbjct: 262 WSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLK 321

Query: 238 R-LMGGDYVL---LSNMYCYLKRWDTAENVREIMKKKGV 272
           R  +  D VL   L +MY    R D    V E MK++ +
Sbjct: 322 RNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREI 360



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 6/174 (3%)

Query: 48  IYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKC--GKIQMAKEVFDTVQRN 105
           ++    + +L +   +H L++      +  +S AL+  Y+         A +VF ++   
Sbjct: 37  LFDSKSITSLQYLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNP 96

Query: 106 DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYF 165
           +V +WN +I G   +     A   + +M + +  P+  T+  L  ACS    V+EGR+  
Sbjct: 97  NVFIWNIVIKGCLENNKLFKAIYFYGRM-VIDARPNKFTYPTLFKACSVAQAVQEGRQIH 155

Query: 166 DHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            H+  ++ I   +    A + +    G +E+A  +  S   E DVV W  ++  
Sbjct: 156 GHV-VKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYS--GESDVVCWNTMIDG 206


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/411 (46%), Positives = 267/411 (64%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+D  SW+SMI  + ++ R  EAL  +REM ++ + PD  T  SV+  C+ LGAL     
Sbjct: 82  DRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAE 141

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  +   +IEL+  L  ALIDMY+KCG I+ A+ VFD +   DV  W++MI G+A HGL
Sbjct: 142 VHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGL 201

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             ++ ++F+KM    + P+ +TF+G+L AC+H GLV EG+KYF  M   + I+P +EHYG
Sbjct: 202 GHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYG 261

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVN---ISRL 239
            MVDLLGR+GH+EEA  LI SMT EPD ++WRALL ACR  K +E+ E A+     +  L
Sbjct: 262 CMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVLDPL 321

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             G YVLLSN+Y     W+    +R+ +++  +++  G+S +E    IH+F +GDR HP 
Sbjct: 322 GDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFVSGDRLHPR 381

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           ++ I ++L  ++ R K  G+ P T LVL D+ E+ KE +L  HSEKLA+A+ +L T   +
Sbjct: 382 SKEIYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQSKERSLAEHSEKLAIAFALLTTPARS 441

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI+KNLR C DCHS +K+IS +  R +IVRDR RFH F  G CSC DYW
Sbjct: 442 TIRITKNLRACEDCHSAMKLISLVYDRKLIVRDRNRFHHFSEGQCSCKDYW 492



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 73/137 (53%), Gaps = 2/137 (1%)

Query: 81  ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP 140
            +I  Y+  G++ +A+E+FD  +  D   W++MIS  A    + +A  ++ +M   +++P
Sbjct: 59  TMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIP 118

Query: 141 DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL 200
           D IT + +++ACS  G +  G +    + S   I+  L+   A++D+  + G IE A  +
Sbjct: 119 DCITLVSVVSACSDLGALAVGAEVHRFVESN-RIELDLKLGTALIDMYAKCGDIESAQRV 177

Query: 201 ITSMTMEPDVVVWRALL 217
              M  E DV  W +++
Sbjct: 178 FDRMP-EKDVQTWSSMI 193



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 2/143 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KDV +W+SMI G   +    E+L  F +M+S  ++P+  TF  V+  C  +G ++  
Sbjct: 181 MPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEG 240

Query: 61  -YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             +  ++     IE        ++D+  + G ++ A+++  ++    D  +W A++    
Sbjct: 241 KKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACR 300

Query: 119 IHGLAADASAIFTKMEMFNVLPD 141
           IH     A     K+ + + L D
Sbjct: 301 IHKNVEIAEEAMAKLRVLDPLGD 323



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 88/196 (44%), Gaps = 16/196 (8%)

Query: 85  MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSIT 144
           MY+K G++ +A++ FD     DV + N M++        A+A  +F  M M     D ++
Sbjct: 1   MYAKAGRVDLARDAFDEAPLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPM----RDLVS 56

Query: 145 FLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
           +  ++   +  G V   R+ FD    R +       + +M+    ++   +EA  L   M
Sbjct: 57  WNTMIHGYAMRGEVGLAREIFDGTEDRDAFS-----WSSMISAYAKSRRSKEALELWREM 111

Query: 205 ---TMEPDVVVWRALLSACRTFKRLELG-EVAIVNISRLMGGDYVL---LSNMYCYLKRW 257
              ++ PD +   +++SAC     L +G EV     S  +  D  L   L +MY      
Sbjct: 112 HAASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDI 171

Query: 258 DTAENVREIMKKKGVR 273
           ++A+ V + M +K V+
Sbjct: 172 ESAQRVFDRMPEKDVQ 187


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/412 (46%), Positives = 276/412 (66%), Gaps = 3/412 (0%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P ++ V+WN++I G V+    ++ALR F  ML  +V+  + T++S +  CA L AL    
Sbjct: 200 PHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGL 259

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H+L ++   + + +++ ALIDMY+KCG I+ A+ VFD + + D   WNAMISG ++HG
Sbjct: 260 QIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHG 319

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
           L  +A  IF KM+   V PD +TF+G+L+AC++ GL+++G+ YF  M   + I+P +EHY
Sbjct: 320 LGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHY 379

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
             MV LLGR GH+++A  LI  +  +P V+VWRALL AC     +ELG ++   +  +  
Sbjct: 380 TCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEP 439

Query: 242 GD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
            D   +VLLSNMY   KRWD   +VR+ MK+KGV+K  G SW+E  G +H F  GD SHP
Sbjct: 440 QDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHP 499

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           E + I+ +L  L  +TK  G++P   +VL+DV +EEKE  L+ HSE+LAL++GI++T  G
Sbjct: 500 EVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSG 559

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + IRI KNLRIC DCH+ IK IS++++R I+VRD  RFH F+ GLCSCGDYW
Sbjct: 560 SPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 611



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 128/242 (52%), Gaps = 15/242 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++ +S+ ++I G+  + RF EA+  F   L  +V P++FTFASV+  CA +  LN  
Sbjct: 99  MPERNTISFVTLIQGYAESVRFLEAIELFVR-LHREVLPNQFTFASVLQACATMEGLNLG 157

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF-DTVQRNDVSVWNAMISGVAI 119
             +H  +I+  +  +  +S AL+D+Y+KCG+++ + E+F ++  RNDV+ WN +I G   
Sbjct: 158 NQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVT-WNTVIVGHVQ 216

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            G    A  +F  M  + V    +T+   L AC+    +E G +    +  + +    + 
Sbjct: 217 LGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQ-IHSLTVKTTFDKDIV 275

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS----------ACRTFKRLELG 229
              A++D+  + G I++A  L+  +  + D V W A++S          A R F +++  
Sbjct: 276 VTNALIDMYAKCGSIKDAR-LVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQET 334

Query: 230 EV 231
           EV
Sbjct: 335 EV 336



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 4/124 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALN-- 58
           M  +D VSWN+MI G+  +    EALR F +M  ++V+PDK TF  V+  CA  G L+  
Sbjct: 300 MNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQG 359

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGV 117
            AY+  ++I +  IE        ++ +  + G +  A ++ D +  +  V VW A++   
Sbjct: 360 QAYFT-SMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGAC 418

Query: 118 AIHG 121
            IH 
Sbjct: 419 VIHN 422



 Score = 42.4 bits (98), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 43/215 (20%), Positives = 92/215 (42%), Gaps = 7/215 (3%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFT---FASVIYGCARLGALNHAYW 62
           +V  N+ +  F R     ++ +  +E +   V P +F    +A+ +  C +    +    
Sbjct: 1   MVCRNNFLIQFSRRGFSVQSAKLTQEFVG-HVSPSEFNSHAYANALQDCIQKDEPSRGKG 59

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  I+++   L+      L++MY K   +  A ++FD +   +   +  +I G A    
Sbjct: 60  LHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVR 119

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F ++    VLP+  TF  +L AC+    +  G +   H+  +  +   +    
Sbjct: 120 FLEAIELFVRLHR-EVLPNQFTFASVLQACATMEGLNLGNQIHCHV-IKIGLHSDVFVSN 177

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           A++D+  + G +E +  L        D V W  ++
Sbjct: 178 ALMDVYAKCGRMENSMELFAESPHRND-VTWNTVI 211


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/413 (45%), Positives = 271/413 (65%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D+V+WNSMI GF  N R +EAL  FREM    VEPD FT  S++   A LGAL   
Sbjct: 179 MKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELG 238

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +++  +  N  ++ +L+D+Y+KCG I+ A+ VF  +   +   W ++I G+A++
Sbjct: 239 RRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVN 298

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +ME   ++P  ITF+G+L ACSHCG+++EG +YF  M+    I P++EH
Sbjct: 299 GFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEH 358

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDLL RAG +++AY  I +M ++P+ V+WR LL AC     L LGE+A   ++N+ 
Sbjct: 359 YGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLE 418

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               GDYVLLSN+Y   +RW   + +R  M K GV+K+ G S +EL   +++F  GDRSH
Sbjct: 419 PKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSH 478

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P++Q +  +L  + +  K EG++P T  VL D+ EEEKE  L +HSEK+A+A+ +L T P
Sbjct: 479 PQSQDVYALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKVAIAFMLLNTPP 538

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IR+ KNLR+C DCH  IK+I+++  R I++RDR RFH F GG CSC DYW
Sbjct: 539 GTPIRVMKNLRVCADCHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 115/215 (53%), Gaps = 2/215 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + +V +WN++I G+  +     A  F+R+M+ S VEPD  T+  ++   ++   +     
Sbjct: 80  NPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEA 139

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H++ I    E    +  +L+ +Y+ CG  + A +VF+ ++  D+  WN+MI+G A++G 
Sbjct: 140 IHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGR 199

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F +M +  V PD  T + LL+A +  G +E GR+   ++  +  +        
Sbjct: 200 PNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLL-KVGLSKNSHVTN 258

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           +++DL  + G I EA  + + M+ E + V W +L+
Sbjct: 259 SLLDLYAKCGAIREAQRVFSEMS-ERNAVSWTSLI 292



 Score = 43.1 bits (100), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 66/186 (35%), Gaps = 43/186 (23%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
           +  + S    +  A  VF  +   +V  WN +I G A     + A   + +M +  V PD
Sbjct: 58  IFTIVSLSAPMSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPD 117

Query: 142 SITFLGLLTACSH-----------------------------------CGLVEEGRKYFD 166
           + T+  LL A S                                    CG  E   K F+
Sbjct: 118 THTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFE 177

Query: 167 HMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTF 223
            M+ R      L  + +M++     G   EA  L   M+   +EPD     +LLSA    
Sbjct: 178 LMKER-----DLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAEL 232

Query: 224 KRLELG 229
             LELG
Sbjct: 233 GALELG 238


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/416 (47%), Positives = 275/416 (66%), Gaps = 7/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           MP ++ VSW  M+ G+V +  ++EAL+ F +ML   +V+P++    S++  CA LGAL+ 
Sbjct: 249 MPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQ 308

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             W+H  I + +I L+  +S ALIDMY+KCG+I  A+ VFD + + D+  W +MISG+++
Sbjct: 309 GKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSM 368

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HGL A+    F++M      PD IT LG+L  CSH GLVEEG   F  M   + I P+LE
Sbjct: 369 HGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLE 428

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HYG ++DLLGRAG +E A+  I SM MEPDVV WRALLSACR    ++LGE  I +I+ L
Sbjct: 429 HYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAEL 488

Query: 240 M----GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
                GG YVLLSN+Y  + +W++   VR+ M ++G     G SW+E+ GV+H+F A D+
Sbjct: 489 CPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWIEIDGVVHEFLAADK 548

Query: 296 SHPEAQAIDKILGSLIQRTKSE-GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
            HP    I+K L  +++R   E G++P+T+ VL D++EE+KE  +  HSEKLA+A+G+L 
Sbjct: 549 LHPRISEINKKLNEVLRRISIEGGYVPSTKQVLFDLNEEDKEQAVSWHSEKLAVAFGLLS 608

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T  GT IRI+KNLR C DCHS +K IS +  R I+VRDR RFH F  G CSC DYW
Sbjct: 609 TQEGT-IRITKNLRTCEDCHSAMKTISLVFNREIVVRDRSRFHTFRYGNCSCTDYW 663



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 112/252 (44%), Gaps = 43/252 (17%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSS--KVEPDKFTFASVIYGCARLGAL-NHAYW 62
            + WN MI  + +     E+L  F +ML+       DK+TF  V   C+R   L  +   
Sbjct: 119 TIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGEN 178

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH ++++   E +  +  +L++MYS   ++  AK VFD + + DV  W +++ G A+ G 
Sbjct: 179 VHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGE 238

Query: 123 AADASAIFTKM-------------------------EMFN-------VLPDSITFLGLLT 150
              A  +F  M                         + FN       V P+    + +L+
Sbjct: 239 LVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILS 298

Query: 151 ACSHCGLVEEGR---KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME 207
           AC+H G +++G+    Y D  ++R  +   +    A++D+  + G I+ A  +   +   
Sbjct: 299 ACAHLGALDQGKWIHVYID--KNRILLSSNIS--TALIDMYAKCGRIDCARRVFDGLHKR 354

Query: 208 PDVVVWRALLSA 219
            D++ W +++S 
Sbjct: 355 -DLLTWTSMISG 365


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/413 (45%), Positives = 268/413 (64%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++++V+WNS+I G+  N R +EAL  FREM    VEPD FT  S++  CA LGAL   
Sbjct: 201 MAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALG 260

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H  +++  ++ N     AL+D+Y+KCG I+ A +VFD ++   V  W ++I G+A++
Sbjct: 261 RRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVN 320

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F ++E   ++P  ITF+G+L ACSHCG+V+EG  YF  M+  Y I P++EH
Sbjct: 321 GFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEH 380

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDLLGRAG +++A+  I +M M+P+ VVWR LL AC     L LGEVA   + +L 
Sbjct: 381 YGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLE 440

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               GDYVLLSN+Y   +RW     VR  M ++GV+K+ G S +EL   +H+F  GDRSH
Sbjct: 441 PKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSH 500

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I   L  + +  K EG++P    VL D+ EEEKE  L +HSEK+A+A+ ++ T+ 
Sbjct: 501 PQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAA 560

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH  IK+IS++  R I+VRDR RFH F+ G CSC DYW
Sbjct: 561 GIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSRFHHFKDGHCSCKDYW 613



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 118/235 (50%), Gaps = 12/235 (5%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + ++ +WN+MI G+  +     AL  +R+M  S +EPD  T+  ++   A+L  +     
Sbjct: 102 NPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEK 161

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH++ I    E    +   L+ MY+ CG  + A ++F+ +   ++  WN++I+G A++G 
Sbjct: 162 VHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGR 221

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F +M +  V PD  T + LL+AC+  G +  GR+   +M  +  +   L    
Sbjct: 222 PNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYM-VKVGLDGNLHAGN 280

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL----------SACRTFKRLE 227
           A++DL  + G I +A+ +   M  E  VV W +L+           A   FK LE
Sbjct: 281 ALLDLYAKCGSIRQAHKVFDEME-EKSVVSWTSLIVGLAVNGFGKEALELFKELE 334



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 2/138 (1%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
           +  + S C  +  A ++F  +Q  ++  WN MI G A       A  ++ +M +  + PD
Sbjct: 80  IFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPD 139

Query: 142 SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
           + T+  LL A +    V EG K    +  R   +  +     +V +    GH E A+ L 
Sbjct: 140 THTYPFLLKAIAKLMDVREGEKVHS-IAIRNGFESLVFVQNTLVHMYAACGHAESAHKLF 198

Query: 202 TSMTMEPDVVVWRALLSA 219
             M  E ++V W ++++ 
Sbjct: 199 ELMA-ERNLVTWNSVING 215


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/413 (46%), Positives = 270/413 (65%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVV+W++MI G+ +  R  EAL  F EM    V P++ T  SV+Y CA LGA    
Sbjct: 283 MDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETG 342

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH  I +KK++L   L   LID Y+KCG I  + EVF  +   +V  W A+I G+A +
Sbjct: 343 KWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANN 402

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A   F+ M   +V P+ +TF+G+L+ACSH  LV++GR  F+ MR  + I+P++EH
Sbjct: 403 GEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEH 462

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVD+LGRAG +EEAY  I +M   P+ VVWR LL++CR  K +E+ E ++ +I+RL 
Sbjct: 463 YGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLE 522

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               GDY+LLSN Y  + R + A  VR ++K+K ++K  G S +EL GV+H+F + D  H
Sbjct: 523 PAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEH 582

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
             ++ I   L  ++++ K  G++P T+   ++  EE KE ++ HHSEKLA+AYG+++TSP
Sbjct: 583 KHSKEIHDALDKMMKQIKRLGYVPNTDDARLEAEEESKETSVSHHSEKLAIAYGLIRTSP 642

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T IRISKNLR+C DCH+  K IS++  R+IIVRDR RFH F+ GLCSC DYW
Sbjct: 643 RTTIRISKNLRMCRDCHNATKFISQVFERMIIVRDRNRFHHFKDGLCSCNDYW 695



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 125/219 (57%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++ +V+WNSM+ G+ +N  +DE ++ FR++L  ++E D  T  SV+  C RL  L   
Sbjct: 182 MPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIG 241

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +   I+ K +  N  L+ +LIDMY+KCG++  A+++FD + + DV  W+AMISG A  
Sbjct: 242 ELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQA 301

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A  +F +M+  NV P+ +T + +L +C+  G  E G+    +++ +  ++  +  
Sbjct: 302 DRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKK-KMKLTVTL 360

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              ++D   + G+I+ +  +   M+ + +V  W AL+  
Sbjct: 361 GTQLIDFYAKCGYIDRSVEVFKEMSFK-NVFTWTALIQG 398



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 111/212 (52%), Gaps = 2/212 (0%)

Query: 8   SWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLI 67
           ++N MI G       D AL  F++M    V+ DKFTF+SV+  C+R+ AL     VH LI
Sbjct: 88  AYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALI 147

Query: 68  IEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADAS 127
           ++   + N  +   LI MY+ CG+I +A+ VFD +    +  WN+M+SG   +GL  +  
Sbjct: 148 LKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVV 207

Query: 128 AIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDL 187
            +F K+    +  D +T + +L AC     +E G    +++ S+  ++       +++D+
Sbjct: 208 KLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSK-GLRRNNTLTTSLIDM 266

Query: 188 LGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             + G ++ A  L   M  + DVV W A++S 
Sbjct: 267 YAKCGQVDTARKLFDEMD-KRDVVAWSAMISG 297



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 104/254 (40%), Gaps = 49/254 (19%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKC--GKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           VH  +++ +  L+ I++ A+++  +      I  A  +F+ + + + S +N MI G+A  
Sbjct: 40  VHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDKPESSAYNVMIRGLAFK 99

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACS--------------------------- 153
               +A  +F KM   +V  D  TF  +L ACS                           
Sbjct: 100 RSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVE 159

Query: 154 --------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL---IT 202
                   +CG +   R  FD M  R  +      + +M+    + G  +E   L   I 
Sbjct: 160 NTLIQMYANCGQIGVARHVFDGMPERSIVA-----WNSMLSGYTKNGLWDEVVKLFRKIL 214

Query: 203 SMTMEPDVVVWRALLSACRTFKRLELGE-VAIVNISRLMGGDYVL---LSNMYCYLKRWD 258
            + +E D V   ++L AC     LE+GE +    +S+ +  +  L   L +MY    + D
Sbjct: 215 ELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVD 274

Query: 259 TAENVREIMKKKGV 272
           TA  + + M K+ V
Sbjct: 275 TARKLFDEMDKRDV 288


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/415 (46%), Positives = 269/415 (64%), Gaps = 6/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KD+V+WNS+I GF  N + +EAL  ++ M S  VEPD FT  S++  CA L  L   
Sbjct: 67  MPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLG 126

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT--VQRNDVSVWNAMISGVA 118
              H  +++  +  N   + AL+D+Y+KCG I  A+++FD   ++RN VS W ++I G+A
Sbjct: 127 RRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVS-WTSLIVGLA 185

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           ++G   +A   F  ME   ++P  ITF+G+L ACSHCG+V EG +YF  M+ +Y I P++
Sbjct: 186 VNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRI 245

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           EHYG MVDLLGRAG ++EAY  I  M ++P+ V+WR LL AC     L LG  A   + +
Sbjct: 246 EHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLLQ 305

Query: 239 LM---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L     GDYVLLSN+Y   +RW     VR  M  +GVRK+ G S +EL   +H+F  GDR
Sbjct: 306 LEPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHVHEFVMGDR 365

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           +HP+++AI K+L  +  + K  G++P T  VL D+ EEEKE  L++HSEK+A+A+ ++ T
Sbjct: 366 THPQSEAIYKMLVEMAMKLKLAGYVPHTANVLADIEEEEKESALFYHSEKIAIAFMLINT 425

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            PGT IRI KNLR+C DCH  IK+IS++  R I+VRD  RFH F  G CSC DYW
Sbjct: 426 LPGTPIRIIKNLRVCADCHFAIKLISKVFERDIVVRDCSRFHHFRDGSCSCRDYW 480



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 67/125 (53%), Gaps = 1/125 (0%)

Query: 93  QMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC 152
           + A +VF+ +   D+  WN++I+G A++G   +A  ++ +M    V PD  T + LL+AC
Sbjct: 58  ESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSAC 117

Query: 153 SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
           +    +  GR+   +M  +  +   L    A++DL  + G I EA  +   M +E +VV 
Sbjct: 118 AELATLVLGRRAHVYM-VKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVS 176

Query: 213 WRALL 217
           W +L+
Sbjct: 177 WTSLI 181


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/413 (45%), Positives = 265/413 (64%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D V WN MI G+ +N   +EAL  FR ML +K +P++ T  SV+  C +LGAL   
Sbjct: 163 MEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESG 222

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH+ I    I+ N  +  AL+DMYSKCG ++ A+ VFD +   DV  WN+MI G A+ 
Sbjct: 223 RWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMX 282

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G + +A  +F  M    + P +ITF+G+L+AC H G V EG   F+ M+  Y I+P++EH
Sbjct: 283 GFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEH 342

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI---VNIS 237
           YG MV+LLGRAGH+E+AY L+ +M +EPD V+W  LL ACR   ++ LGE  +   V+ +
Sbjct: 343 YGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQN 402

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y+LLSN+Y  +  WD    +R +MK  GV+K  G S +E+   +H+F AG  +H
Sbjct: 403 LANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNH 462

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I  +L  +    KS G+ P T++VL D+ E EKE +L  HSEKLA+A+G++ T P
Sbjct: 463 PKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQP 522

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT I+I KNLR+C DCH   K+IS++  R I+VRDR RFH F  G CSCGDYW
Sbjct: 523 GTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 575



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 114/246 (46%), Gaps = 37/246 (15%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGC----------- 51
           +  V  W ++I G       ++AL F+ +ML+  VEP+ FTF+S++  C           
Sbjct: 37  NPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCPIEPGKALHSQ 96

Query: 52  --------------------ARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK 91
                               AR G +  A  + + + EK +    +   A++  Y+K G+
Sbjct: 97  AVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSL----VSLTAMLTCYAKHGE 152

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           +  A+ +FD ++  D   WN MI G   +G+  +A  +F +M      P+ +T L +L+A
Sbjct: 153 LDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSA 212

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           C   G +E GR    ++ +   IQ  +    A+VD+  + G +E+A  L+     + DVV
Sbjct: 213 CGQLGALESGRWVHSYIENN-GIQFNVHVGTALVDMYSKCGSLEDAR-LVFDKIDDKDVV 270

Query: 212 VWRALL 217
            W +++
Sbjct: 271 AWNSMI 276



 Score = 45.4 bits (106), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 6/146 (4%)

Query: 86  YSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145
           Y+  G++  +  +F   Q   V  W A+I G A+ GL   A   + +M    V P++ TF
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78

Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
             +L  C     +E G K       +      L     ++D+  R G +  A  L  +M 
Sbjct: 79  SSILKLCP----IEPG-KALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMP 133

Query: 206 MEPDVVVWRALLSACRTFKRLELGEV 231
            E  +V   A+L+       L+   V
Sbjct: 134 -EKSLVSLTAMLTCYAKHGELDAARV 158


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/414 (46%), Positives = 272/414 (65%), Gaps = 5/414 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++DVVSW ++I G+ +N   DE+L  F +M  + ++ D+F   SV+  CA L AL   
Sbjct: 102 MSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELG 161

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAI 119
              H  +++    L+ ++ +AL+DMY+K G ++ A +VFD + QRN+VS WN++I+G A 
Sbjct: 162 RQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVS-WNSIITGCAQ 220

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   DA  +F +M    + P+ I+F+G+L+ACSH GLV EGR YF+ M   Y I P + 
Sbjct: 221 HGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVS 280

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE-VA--IVNI 236
           HY  M+DLLGRAG ++EA   I  M +EPDV VW ALL ACR     EL + +A  ++ +
Sbjct: 281 HYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGM 340

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
              + G YVLLSN+Y    +WD A  VR++MK +GV K  G SW+E+  ++H F AG+ S
Sbjct: 341 EVQIAGIYVLLSNIYAAAGQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETS 400

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+ + I + L SL ++ K+ G++P    VL DV ++EKE +L HHSEKLA+A+GI+ T+
Sbjct: 401 HPQLKEIHEFLESLSRKMKAAGYVPNKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTN 460

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PGT IR++KNLR+C DCH+ IK IS    R I+VRD  RFH F+ G CSCGDYW
Sbjct: 461 PGTTIRVAKNLRVCGDCHTVIKFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 104/226 (46%), Gaps = 35/226 (15%)

Query: 32  MLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK 91
           M+   V+P++FT ++V+  CA + +L      HN II+   E + ++  AL+ MY++CG 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 92  IQMAKEVFDTVQRNDVSVWNAMIS-------------------------------GVAIH 120
           ++ A  VFD +       WNAMI+                               G A +
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
           G   ++  +F +M    +  D      +L+AC+    +E GR++  + ++S +++   + 
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVG 180

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKR 225
              A+VD+  ++G +E+A  +   M    + V W ++++ C    R
Sbjct: 181 --SALVDMYAKSGSMEDACQVFDKMPQRNE-VSWNSIITGCAQHGR 223


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/413 (46%), Positives = 271/413 (65%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVV+W++MI G+ +  +  EAL  F EM  ++VEP+  T  SV+  CA LGAL   
Sbjct: 282 MQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETG 341

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH+ +  K++ L  IL  AL+D Y+KCG I  A E F+++   +   W A+I G+A +
Sbjct: 342 KWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATN 401

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F+ M    + P  +TF+G+L ACSH  LVEEGR++FD M   Y I+P++EH
Sbjct: 402 GRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEH 461

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDLLGRAG ++EAY  I +M +EP+ V+WRALLS+C   + + +GE A   I++++
Sbjct: 462 YGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLN 521

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               GDYVLLSN+Y    +W  A  VR+ MK +G+ K+ G S +EL GV+ +F A D  H
Sbjct: 522 PSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDH 581

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE + I + +  +I R K  G++P T  V ++V E EKE ++ HHSEKLA+A+G++K  P
Sbjct: 582 PELREIYQKVEEMIGRIKVAGYVPNTADVRLEVEEREKEVSVSHHSEKLAIAFGLMKLDP 641

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+SKNLR+C DCHS  K+IS++  R I+VRDR  FH F+ G CSC DYW
Sbjct: 642 GATIRLSKNLRVCADCHSATKLISKVYDREIVVRDRNIFHHFKDGTCSCNDYW 694



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 120/224 (53%), Gaps = 4/224 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +  VV WN+++  +++N  + E +  F+ ML   V  D+ T  SV+  C R+G      W
Sbjct: 183 ESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKW 242

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           V   + E+ +  N  L  AL+DMY+KCG+I  A+ +FD +Q  DV  W+AMISG      
Sbjct: 243 VAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQ 302

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLEHY 181
             +A  +F++M++  V P+ +T + +L+AC+  G +E G+    ++ R R S+   L   
Sbjct: 303 CREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGT- 361

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKR 225
            A+VD   + G I++A     SM ++ +   W AL+    T  R
Sbjct: 362 -ALVDFYAKCGCIDDAVEAFESMPVK-NSWTWTALIKGMATNGR 403



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 118/269 (43%), Gaps = 45/269 (16%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREML--SSKVEPDKFTFASVIYGCARLGALNH 59
           P      +N ++  F+     ++AL  F EML  +S    D+ T A  +  C+R+ AL+ 
Sbjct: 79  PPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDV 138

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              V    +++ +  +  + ++LI MY+ CG +  A+ VFD  + + V +WNA+++    
Sbjct: 139 GRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLK 198

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTAC--------------------------- 152
           +G   +   +F  M    V  D +T + ++TAC                           
Sbjct: 199 NGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKL 258

Query: 153 --------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
                   + CG + + R+ FD M+SR  +      + AM+    +A    EA GL + M
Sbjct: 259 VTALMDMYAKCGEIGKARRLFDGMQSRDVVA-----WSAMISGYTQADQCREALGLFSEM 313

Query: 205 TM---EPDVVVWRALLSACRTFKRLELGE 230
            +   EP+ V   ++LSAC     LE G+
Sbjct: 314 QLARVEPNDVTMVSVLSACAVLGALETGK 342


>gi|414885893|tpg|DAA61907.1| TPA: hypothetical protein ZEAMMB73_945776 [Zea mays]
          Length = 584

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/416 (48%), Positives = 269/416 (64%), Gaps = 6/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           MP +D VSWN+++   V N  +DEA+  FREML+S+  +PD+ T  SV+   A LGAL H
Sbjct: 169 MPSRDSVSWNTVLSWCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAH 228

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             W H  +  K IE+   LS+ALI+MYSKCG I+ A  VFD V  +  +  WNAM++G  
Sbjct: 229 GLWAHAYVFRKCIEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGKRSLDTWNAMLAGFT 288

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            +G +  A  +FT+ME   ++P+ ITF  +L ACSH GLVEEG KYF  M   Y I+P +
Sbjct: 289 ANGYSERALELFTRMESTRLMPNKITFNTVLNACSHGGLVEEGMKYFQRMSRFYGIEPDI 348

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
            HYG MVDL  RAG  E+A  +I +M MEPD  + +ALL ACRT K LELG+     +  
Sbjct: 349 AHYGCMVDLFCRAGMFEKAEEIIQTMPMEPDASMLKALLGACRTHKNLELGKKVGHRLIE 408

Query: 239 LMGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
               D   YVLLSN+Y     W     VR++M  +GV K+ G S +EL GVIH+F +GD+
Sbjct: 409 AAANDHAGYVLLSNIYALDGNWGGVHKVRKLMLDRGVLKTPGSSSVELNGVIHEFISGDK 468

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEE-KEGNLYHHSEKLALAYGILK 354
           SH   + I K+LG + Q+ KS G+ P T  VL+D+ +E+ KE +L  HSEKLA+A+G++ 
Sbjct: 469 SHSRKRDIYKMLGEICQQLKSSGYTPDTSQVLLDIDDEDVKESSLALHSEKLAIAFGLIS 528

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T+PGT IR+  NLRIC DCH+ IK+IS++  R IIVRD  RFH F  G CSCGDYW
Sbjct: 529 TAPGTPIRVVNNLRICGDCHNAIKLISKIYGRCIIVRDANRFHHFRKGSCSCGDYW 584



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 82/417 (19%), Positives = 151/417 (36%), Gaps = 95/417 (22%)

Query: 25  ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFI-LSAALI 83
           ALR F  +L S  +PD   +      CAR      A  +H    ++ +  +   +   L+
Sbjct: 59  ALRLFDHLLRSGADPDPAAYELAFASCARARDRATAAQLHAHAAKRGLVASHRRVRCRLV 118

Query: 84  DMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA------------------------- 118
             Y+ CG +  A+ VFD    ND+  WN ++ G A                         
Sbjct: 119 HAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDEDLLRDFFARMPSRDSVSWN 178

Query: 119 -------IHGLAADASAIFTKM-EMFNVLPDSITFLGLLTAC------------------ 152
                  ++G   +A A+F +M       PD +T + +++A                   
Sbjct: 179 TVLSWCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAHGLWAHAYVFR 238

Query: 153 -----------------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIE 195
                            S CG +E     FD++  + S    L+ + AM+      G+ E
Sbjct: 239 KCIEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGKRS----LDTWNAMLAGFTANGYSE 294

Query: 196 EAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG-----GDYVLL 247
            A  L T M    + P+ + +  +L+AC     +E G      +SR  G       Y  +
Sbjct: 295 RALELFTRMESTRLMPNKITFNTVLNACSHGGLVEEGMKYFQRMSRFYGIEPDIAHYGCM 354

Query: 248 SNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKIL 307
            +++C    ++ AE + + M  +             A ++       R+H   +   K+ 
Sbjct: 355 VDLFCRAGMFEKAEEIIQTMPME-----------PDASMLKALLGACRTHKNLELGKKVG 403

Query: 308 GSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIRIS 364
             LI+   ++    A  ++L ++   +      H   KL L  G+LKT   + + ++
Sbjct: 404 HRLIEAAANDH---AGYVLLSNIYALDGNWGGVHKVRKLMLDRGVLKTPGSSSVELN 457


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/407 (46%), Positives = 264/407 (64%), Gaps = 4/407 (0%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           VSWN+MI G+ +N R  EAL  F EM S  ++PD FT  SVI   A L    HA W+H L
Sbjct: 416 VSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGL 475

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           II   ++ N  ++ AL+DMYSKCG I MA+++FD +    V  WNAMI G   HGL   A
Sbjct: 476 IIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAA 535

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186
             +F KM+   V P+ IT+L +++ACSH GLV+EG ++F  M+  Y ++P ++HYGAMVD
Sbjct: 536 LDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVD 595

Query: 187 LLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM---GGD 243
           LLGRAG I+EA+  I +M + P + V+ A+L AC+  K +E+GE A   +  L    GG 
Sbjct: 596 LLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGY 655

Query: 244 YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAI 303
           +VLL+N+Y    +W     VR+ M+KKG++K+ G S +EL   +H F +G  +HP+++ I
Sbjct: 656 HVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRI 715

Query: 304 DKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIRI 363
              L  L+   K+ G++P T L+L DV ++ +E  L  HSEKLA+A+G+L TSPGT I +
Sbjct: 716 YAFLEELVYEIKAAGYVPDTNLIL-DVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIHV 774

Query: 364 SKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            KNLR+C DCH+  K IS +  R IIVRD  RFH F+ G+CSCGDYW
Sbjct: 775 RKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 3/172 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D+VSWN++I GF +N    +AL     M      PD  T  +V+   A +G L   
Sbjct: 208 MPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVG 267

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   I         +S AL DMYSKCG ++ A+ +FD + +  V  WN+M+ G   +
Sbjct: 268 KSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQN 327

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---KYFDHMR 169
           G    A A+F KM    + P  +T +  L AC+  G +E G+   K+ D + 
Sbjct: 328 GEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLN 379



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 125/303 (41%), Gaps = 47/303 (15%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           DK    +++M+ G+ +N+  + AL F   M    V+P  + F  ++  C     L     
Sbjct: 109 DKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKE 168

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  +I      N      +++MY+KC +I  A ++FD +   D+  WN +I+G + +G 
Sbjct: 169 IHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGF 228

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTAC------------------------------ 152
           A  A  +  +M+     PDSIT + +L A                               
Sbjct: 229 AKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTA 288

Query: 153 -----SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT-- 205
                S CG VE  R  FD M  +  +      + +M+D   + G  E+A  +   M   
Sbjct: 289 LADMYSKCGSVETARLIFDGMDQKTVVS-----WNSMMDGYVQNGEPEKAIAVFEKMLEE 343

Query: 206 -MEPDVVVWRALLSACRTFKRLELGEVAIVNISRL-MGGDYVLLS---NMYCYLKRWDTA 260
            ++P  V     L AC     LE G+     + +L +G D  +++   +MY   KR D A
Sbjct: 344 GIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIA 403

Query: 261 ENV 263
            ++
Sbjct: 404 SDI 406



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 8/125 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + D+ V++WN+MI G+  +     AL  F +M    VEP+  T+ SVI  C+  G ++  
Sbjct: 511 ISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEG 570

Query: 61  Y-WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS----VWNAMIS 115
                ++  +  +E +     A++D+  + G+I   KE +D ++   +S    V+ AM+ 
Sbjct: 571 LRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRI---KEAWDFIENMPISPGITVYGAMLG 627

Query: 116 GVAIH 120
              IH
Sbjct: 628 ACKIH 632



 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 2/154 (1%)

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
           L+I+  +    +    L+ ++SK G I  A  VF+ +     ++++ M+ G A +     
Sbjct: 71  LVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLET 130

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           A A   +M   +V P    F  LL  C     ++ G++    + +  S    +     +V
Sbjct: 131 ALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITN-SFAANVFAMTGVV 189

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++  +   I++AY +   M  E D+V W  +++ 
Sbjct: 190 NMYAKCRQIDDAYKMFDRMP-ERDLVSWNTIIAG 222


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/414 (44%), Positives = 270/414 (65%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +K+ +SW +MI G+V+     EAL+ F EM +S VEPD  + A+ +  CA+LGAL   
Sbjct: 207 MAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQG 266

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H+ + + +I ++ +L   LIDMY+KCG+++ A EVF  +++  V  W A+ISG A H
Sbjct: 267 KWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYH 326

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A + F +M+   + P+ ITF  +LTACS+ GLVEEG+  F  M   Y+++P +EH
Sbjct: 327 GHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEH 386

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE---VAIVNIS 237
           YG +VDLLGRAG ++EA   I  M ++P+ V+W ALL ACR  K +ELGE     ++ I 
Sbjct: 387 YGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAID 446

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              GG YV  +N++   K+WD A   R +MK++GV K  G S + L G  H+F AGDRSH
Sbjct: 447 PYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSH 506

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMD-VSEEEKEGNLYHHSEKLALAYGILKTS 356
           PE + I      + ++ +  G++P  E +L+D V ++E+E  ++ HSEKLA+ YG++KT 
Sbjct: 507 PEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTK 566

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PGT IRI KNLR+C DCH   K+IS++ +R I++RDR RFH F  G CSCGDYW
Sbjct: 567 PGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 110/247 (44%), Gaps = 35/247 (14%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGAL------- 57
           D   WN MI GF  +   + +L  ++ ML S    + +TF S++  C+ L A        
Sbjct: 79  DTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIH 138

Query: 58  ---------NHAYWVHNLIIEKKIELNFILSAALIDM---------------YSKCGKIQ 93
                    N  Y V++LI    +  NF L+  L D                Y K GK+ 
Sbjct: 139 AQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMD 198

Query: 94  MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
           +A  +F  +   +   W  MISG     +  +A  +F +M+  +V PD+++    L+AC+
Sbjct: 199 IALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACA 258

Query: 154 HCGLVEEGRKYFDHM-RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
             G +E+G+    ++ ++R  +   L     ++D+  + G +EEA  +  ++  +  V  
Sbjct: 259 QLGALEQGKWIHSYLNKTRIRMDSVLG--CVLIDMYAKCGEMEEALEVFKNIK-KKSVQA 315

Query: 213 WRALLSA 219
           W AL+S 
Sbjct: 316 WTALISG 322



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 8/144 (5%)

Query: 74  LNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM 133
           L+F +S+   D       +  A+ VFD   R D  +WN MI G +       +  ++ +M
Sbjct: 53  LSFCISSTSSDF------LPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRM 106

Query: 134 EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGH 193
              +   ++ TF  LL ACS+    EE  +    + ++   +  +    ++++     G+
Sbjct: 107 LCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQI-TKLGYENDVYAVNSLINSYAVTGN 165

Query: 194 IEEAYGLITSMTMEPDVVVWRALL 217
            + A+ L   +  EPD V W +++
Sbjct: 166 FKLAHLLFDRIP-EPDDVSWNSVI 188


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/416 (45%), Positives = 275/416 (66%), Gaps = 6/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++DV+SW +MI G+ +  +  EAL  F+EM +  ++PD+ T  +V+  CARLGA +  
Sbjct: 307 MHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLG 366

Query: 61  YWVHNLIIEKKI-ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS--VWNAMISGV 117
             +++  IE  +   N IL+AA++DMY+KCG I  A E+F  V +N  +  V+N+MI+G+
Sbjct: 367 KRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGL 426

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           A HGL   A  +F ++    + PD +TF+G+L AC H GL+EEG+K F+ M + Y I+PQ
Sbjct: 427 AQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQ 486

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IV 234
           +EHYG MVDLLGR G +EEAY L+  M  E + V+WRALLSACRT   +++GE+A   ++
Sbjct: 487 MEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLL 546

Query: 235 NISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294
            +    G  YVLLSN+     +W+ A  VR++M+  G+RK  G S++EL G IH+F A D
Sbjct: 547 EMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASD 606

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
           +SHP+ + I+ +L  +  R KS G++P T  V+ D+ EEEKE  + +HSEKLALA+G++ 
Sbjct: 607 KSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMY 666

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            SP   IRI KNLRIC DCH   K++S +  R I VRD +RFH F  G CSC D+W
Sbjct: 667 CSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDFW 722



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 109/228 (47%), Gaps = 34/228 (14%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D+VS+N+MI G+    + + AL  F EM +S + PD+FTF ++   C+ L   N    +
Sbjct: 175 RDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQI 234

Query: 64  HNLIIE--KKIELNFILSAALIDMYSKCGKIQMAKEVFDTV------------------- 102
           H  + +  + I+ N +L +A++DMY+KCG I +A+ VF T+                   
Sbjct: 235 HAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARC 294

Query: 103 -------------QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
                           DV  W AMISG +  G  ++A  +F +ME   + PD +T + +L
Sbjct: 295 GEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVL 354

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEA 197
           +AC+  G  + G++ +                 A++D+  + G I+ A
Sbjct: 355 SACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSA 402



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 107/215 (49%), Gaps = 2/215 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKV-EPDKFTFASVIYGCARLGALNHAYWV 63
           ++  WN+MI G+ R+    EA+  +  M++  +  P+ FTF  ++  CARL +L   + V
Sbjct: 74  NLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEV 133

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H+ II+   E +  +  ALI +YS  G + +A+ +FD     D+  +N MI G A     
Sbjct: 134 HSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQP 193

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLEHYG 182
             A  +F +M+   +LPD  TF+ L + CS       G++    + ++  SI   +    
Sbjct: 194 ESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKS 253

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           A+VD+  + G I  A  + ++M        W +++
Sbjct: 254 AIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMV 288


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/413 (45%), Positives = 270/413 (65%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P++D VSW +MI G++R  RF EAL  FREM  S V+PD+FT  S++  CA LGAL   
Sbjct: 300 IPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELG 359

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WV   I +  I+ +  +  ALIDMY KCG +  AK+VF  +   D   W AMI G+AI+
Sbjct: 360 EWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAIN 419

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A A+F+ M   ++ PD IT++G+L AC+H G+VE+G+ +F  M  ++ I+P + H
Sbjct: 420 GHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTH 479

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDLLGRAG +EEA+ +I +M ++P+ +VW +LL ACR  K ++L E+A   I  L 
Sbjct: 480 YGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELE 539

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              G  YVLL N+Y   KRW+    VR++M ++G++K+ G S +EL G +++F AGD+SH
Sbjct: 540 PENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSH 599

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+++ I   L +++Q     G+ P T  V +D+ EE+KE  LY HSEKLA+AY ++ + P
Sbjct: 600 PQSKEIYAKLENMMQDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGP 659

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KNLR+C DCH   K++S    R +IVRD+ RFH F  G CSC ++W
Sbjct: 660 GITIRIVKNLRMCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 172/423 (40%), Gaps = 78/423 (18%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +VV+WN M+ G+ R  +F ++   F EM    V P+  T   ++  C++L  L     ++
Sbjct: 172 EVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIY 231

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG--- 121
             I    +E N IL   LIDM++ CG++  A+ VFD ++  DV  W ++++G A  G   
Sbjct: 232 KYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQID 291

Query: 122 LA----------------------------ADASAIFTKMEMFNVLPDSITFLGLLTACS 153
           LA                             +A A+F +M+M NV PD  T + +LTAC+
Sbjct: 292 LARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACA 351

Query: 154 HCGLVEEG---RKYFD----------------------HMRSRYSIQPQLEH-----YGA 183
           H G +E G   + Y D                      ++     +  ++ H     + A
Sbjct: 352 HLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTA 411

Query: 184 MVDLLGRAGHIEEAYGLITSM---TMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           M+  L   GH EEA  + ++M   ++ PD + +  +L AC     +E G+   ++++   
Sbjct: 412 MIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQH 471

Query: 241 G--GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
           G   +      M   L R    E   E++    V K     W  L G         R H 
Sbjct: 472 GIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPV-KPNSIVWGSLLGAC-------RVHK 523

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
             Q  +     +++     G   A  ++L ++    K         KL +  GI KT PG
Sbjct: 524 NVQLAEMAAKQILELEPENG---AVYVLLCNIYAACKRWENLRQVRKLMMERGIKKT-PG 579

Query: 359 TEI 361
             +
Sbjct: 580 CSL 582



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 114/229 (49%), Gaps = 2/229 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P   +  WN+MI G+ R       +  +  ML+S ++PD+FTF  ++ G  R  AL + 
Sbjct: 67  IPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYG 126

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             + N  ++   + N  +  A I M+S C  + +A++VFD     +V  WN M+SG    
Sbjct: 127 KVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRV 186

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                +  +F +ME   V P+S+T + +L+ACS    +E G+  + ++     ++  L  
Sbjct: 187 KQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGI-VERNLIL 245

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG 229
              ++D+    G ++EA  +  +M    DV+ W ++++      +++L 
Sbjct: 246 ENVLIDMFAACGEMDEAQSVFDNMK-NRDVISWTSIVTGFANIGQIDLA 293



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 45/224 (20%)

Query: 90  GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
           GK+  A++VFD + +  + +WN MI G +      +  +++  M   N+ PD  TF  LL
Sbjct: 55  GKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLL 114

Query: 150 TACSHCGLVEEGRKYFDH-----MRSRYSIQPQLEHYGA---MVDLLGRAGHIEEAYGLI 201
              +    ++ G+   +H       S   +Q    H  +   +VDL  +   + +A+ ++
Sbjct: 115 KGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVV 174

Query: 202 TSMTM-------------------------EPDVVVWRALLSACRTFKRLELGEVAIVNI 236
           T   M                          P+ V    +LSAC   K LE G+    +I
Sbjct: 175 TWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGK----HI 230

Query: 237 SRLMGGDYV--------LLSNMYCYLKRWDTAENVREIMKKKGV 272
            + + G  V        +L +M+      D A++V + MK + V
Sbjct: 231 YKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDV 274


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/414 (46%), Positives = 270/414 (65%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KD +SWNS+I G V+N  FD  L FFR ML   V+P   +F+SVI  CA L AL+  
Sbjct: 288 LPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLG 347

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I+    + N  ++++L+DMY+KCG I+MA+ VFD + + D+  W A+I G A+H
Sbjct: 348 RQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMH 407

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A DA ++F  M    V P  + F+ +LTACSH GLV+EG +YF+ M   + I P LEH
Sbjct: 408 GHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEH 467

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMT-MEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           Y A+ DLLGRAG +EEAY  I++M  ++P   VW  LL+ACR  K +EL E     ++++
Sbjct: 468 YAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSV 527

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVL+SN+Y   +RW  A  +R  M+KKG++K+   SW+E+   +H F AGD+S
Sbjct: 528 DSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDKS 587

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP    I+K L  L+++ + EG++  T  VL DV EE K   L++HSE+LA+AYGI+ T+
Sbjct: 588 HPYYDKINKALDVLLEQMEKEGYVIDTNQVLHDVDEELKRELLHNHSERLAIAYGIISTT 647

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            GT IR+ KN+R+C DCH+ IK I++++ R I VRD  RFH F+ G CSCGDYW
Sbjct: 648 AGTTIRVIKNIRVCADCHTAIKFITKIVGREITVRDNSRFHHFKNGSCSCGDYW 701



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 115/221 (52%), Gaps = 3/221 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNH 59
           MP +DVVSWN++I GF +N  + EAL   REM  + K++PD FT +S++   A    +N 
Sbjct: 186 MPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNK 245

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H   +    + +  + ++LIDMY+KC +++ +   F  + R D   WN++I+G   
Sbjct: 246 GKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQ 305

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G        F +M   NV P +++F  ++ AC+H   +  GR+    +  R        
Sbjct: 306 NGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCI-VRLGFDDNEF 364

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
              ++VD+  + G+I+ A  +   +  + D+V W A++  C
Sbjct: 365 IASSLVDMYAKCGNIKMARYVFDRID-KRDMVAWTAIIMGC 404



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 102/231 (44%), Gaps = 22/231 (9%)

Query: 8   SWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLI 67
           +W+S+I  +  ++    +   F  M S  V P++  F S++     L     A+ +H   
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACT 136

Query: 68  IEKKIELNFILSAALIDMYSK---CGK------------IQMAKEVFDTVQRNDVSVWNA 112
           +   ++ +  ++ ALI+ Y+K    GK            I   K+VFD +   DV  WN 
Sbjct: 137 VRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNT 196

Query: 113 MISGVAIHGLAADASAIFTKMEMFNVL-PDSITFLGLLTACSHCGLVEEGRKYFDHMRSR 171
           +I+G A +G+  +A  +  +M     L PDS T   +L   +    V +G++   +   R
Sbjct: 197 VIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYA-VR 255

Query: 172 YSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP--DVVVWRALLSAC 220
                 +    +++D+  +   +E +   + +  + P  D + W ++++ C
Sbjct: 256 NGFDGDVFIGSSLIDMYAKCNRLECS---LRAFYILPRKDAISWNSIIAGC 303


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/413 (46%), Positives = 269/413 (65%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KD+VSW+++I G+ ++  F E L  F EM   ++ PD+    SVI  C  L AL+  
Sbjct: 396 MPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQG 455

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH  I +  +++N IL   L+DMY KCG ++ A EVF+ ++   VS WNA+I G+A++
Sbjct: 456 KWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVN 515

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL   +  +F++M+   V+P+ ITF+G+L AC H GLV+EGR +F  M  ++ I+P ++H
Sbjct: 516 GLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKH 575

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDLLGRAG + EA  LI SM M PDV  W ALL AC+     E+GE     ++ + 
Sbjct: 576 YGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQ 635

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G +VLLSN++     W+    VR +MK++GV K+ G S +E  GV+H+F AGD++H
Sbjct: 636 PDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTH 695

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    ++ +L  + +R K EG+ P T  V +D+ EEEKE  L+ HSEKLA+A+G+L  SP
Sbjct: 696 PWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTISP 755

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T IRI KNLRIC+DCH+  K+IS+   R I+VRDR RFH F+ G CSC DYW
Sbjct: 756 PTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 808



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 121/248 (48%), Gaps = 33/248 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +KD+VSW+++I G+ +N  ++EAL  F EM ++ +  D+    SV+  CA L  +   
Sbjct: 264 MDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTG 323

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYS-------------------------------KC 89
             +H L+I   IE    L  ALI MYS                               KC
Sbjct: 324 KMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKC 383

Query: 90  GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
           G ++ A+ +FD +   D+  W+A+ISG A H   ++  A+F +M++  + PD    + ++
Sbjct: 384 GSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVI 443

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
           +AC+H   +++G+    ++R +  ++  +     ++D+  + G +E A  +   M  E  
Sbjct: 444 SACTHLAALDQGKWVHAYIR-KNGLKVNVILGTTLLDMYMKCGCVENALEVFNGME-EKG 501

Query: 210 VVVWRALL 217
           V  W AL+
Sbjct: 502 VSSWNALI 509



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 120/251 (47%), Gaps = 16/251 (6%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           WN+M+  ++++   ++AL  ++ M+ + V PD +T+  V+  CA          +H+ ++
Sbjct: 109 WNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVL 168

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
           +   + +  +   LI+MY+ CG ++ A+++FD     D   WN++++G    G   +A  
Sbjct: 169 KVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKL 228

Query: 129 IFTKMEMFNVLPDS--ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186
           IF +M   N++  +  I  LG +      G V E  K F+ M  +  +      + A++ 
Sbjct: 229 IFDQMPQRNIVASNSMIVLLGKM------GQVMEAWKLFNEMDEKDMVS-----WSALIS 277

Query: 187 LLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD 243
              + G  EEA  +   M    M  D VV  ++LSAC     ++ G++    + R+    
Sbjct: 278 GYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIES 337

Query: 244 YVLLSNMYCYL 254
           YV L N   ++
Sbjct: 338 YVNLQNALIHM 348



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 106/218 (48%), Gaps = 10/218 (4%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D DV   N++I  +       +A + F E   S V  D  ++ S++ G  + G +  A  
Sbjct: 173 DSDVYVQNTLINMYAVCGNMRDARKLFDE---SPV-LDSVSWNSILAGYVKKGDVEEA-- 226

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
              LI ++  + N + S ++I +  K G++  A ++F+ +   D+  W+A+ISG   +G+
Sbjct: 227 --KLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGM 284

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F +M    +  D +  + +L+AC+H  +V+ G K    +  R  I+  +    
Sbjct: 285 YEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTG-KMIHGLVIRMGIESYVNLQN 343

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
           A++ +   +G I +A  L    +   D + W +++S C
Sbjct: 344 ALIHMYSGSGEIMDAQKLFNG-SHNLDQISWNSMISGC 380



 Score = 39.7 bits (91), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 48/233 (20%), Positives = 83/233 (35%), Gaps = 73/233 (31%)

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAK-----------EVFDTVQRNDV 107
           H +  HNL    +I    IL+  + D ++    ++ +            ++FD ++ ++ 
Sbjct: 47  HLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNG 106

Query: 108 SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS-----------H-- 154
            +WN M+        A  A  ++  M   NV PD+ T+  ++ AC+           H  
Sbjct: 107 FMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDH 166

Query: 155 ----------------------CGLVEEGRKYFDHMRSRYSI------------------ 174
                                 CG + + RK FD      S+                  
Sbjct: 167 VLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEA 226

Query: 175 --------QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                   Q  +    +M+ LLG+ G + EA+ L   M  E D+V W AL+S 
Sbjct: 227 KLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMD-EKDMVSWSALISG 278


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/413 (45%), Positives = 263/413 (63%), Gaps = 5/413 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           DK+VVSWN MIGG+   + + EAL  FR M+ S ++P+  TF S++  CA LGAL+   W
Sbjct: 324 DKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKW 383

Query: 63  VHNLIIE--KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           VH  + +  K ++    L  +LIDMY+KCG + +AK +FD +    ++ WNAMISG A+H
Sbjct: 384 VHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMH 443

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F++M     +PD ITF+G+LTAC H GL+  GR+YF  M   Y + P+L H
Sbjct: 444 GHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPH 503

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG M+DL GRAG  +EA  L+ +M M+PD  +W +LL ACR  +R+EL E    ++  L 
Sbjct: 504 YGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELE 563

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             +   YVLLSN+Y    RW+    +R  +    ++K  G S +E+  V+H+F  GD+ H
Sbjct: 564 PENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVH 623

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P++  I K+L  +  R +  GF+P T  VL D+ EE KEG L HHSEKLA+A+G++ T P
Sbjct: 624 PQSNEIYKMLDEIDMRLEKAGFVPDTSEVLYDMDEEWKEGVLSHHSEKLAIAFGLISTKP 683

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IRI KNLR+C +CHS  K+IS++  R II RDR RFH F+ G CSC DYW
Sbjct: 684 GTTIRIMKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCKDYW 736



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 130/270 (48%), Gaps = 46/270 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA-LNH 59
           +P +DVVSWN+MI G+ ++ R +EA+ FF EM  +KV P+  T  SV+  CA+ G+ L  
Sbjct: 220 IPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQL 279

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             WV + I ++ +  N  L   LIDMY KCG ++ A  +F+ +Q  +V  WN MI G   
Sbjct: 280 GNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTH 339

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH------------------------- 154
                +A  +F +M   N+ P+ +TFL +L AC++                         
Sbjct: 340 MSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTV 399

Query: 155 ------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
                       CG +   ++ FD M ++      L  + AM+      GH + A GL +
Sbjct: 400 ALWTSLIDMYAKCGDLAVAKRIFDCMNTK-----SLATWNAMISGFAMHGHTDTALGLFS 454

Query: 203 SMTME---PDVVVWRALLSACRTFKRLELG 229
            MT E   PD + +  +L+AC+    L LG
Sbjct: 455 RMTSEGFVPDDITFVGVLTACKHAGLLSLG 484



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 91/391 (23%), Positives = 151/391 (38%), Gaps = 97/391 (24%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           V WN MI G   +     AL ++  M+SS  EP+++TF S+   C ++   +    VH  
Sbjct: 94  VIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAH 153

Query: 67  IIEKKIELNFILSAALIDMYSKCGK-------------------------------IQMA 95
           +++  +E N  +  +LI+MY++ G+                               +  A
Sbjct: 154 VLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEA 213

Query: 96  KEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH- 154
           +E+FD +   DV  WNAMISG A  G   +A A F +M    V P+  T L +L+AC+  
Sbjct: 214 RELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQS 273

Query: 155 -----------------------------------CGLVEEGRKYFDHMRSRYSIQPQLE 179
                                              CG +EE    F+ ++ +  +     
Sbjct: 274 GSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVS---- 329

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSM---TMEPDVVVWRALLSACRTFKRLELGEVAIVNI 236
            +  M+         +EA GL   M    ++P+ V + ++L AC     L+LG+     +
Sbjct: 330 -WNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYV 388

Query: 237 SRLMG------GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQF 290
            + M         +  L +MY        A+ + + M  K +      +W     +I  F
Sbjct: 389 DKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSL-----ATW---NAMISGF 440

Query: 291 KAGDRSHPEAQAIDKILGSLIQRTKSEGFLP 321
                +       D  LG L  R  SEGF+P
Sbjct: 441 AMHGHT-------DTALG-LFSRMTSEGFVP 463



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K + +WN+MI GF  +   D AL  F  M S    PD  TF  V+  C   G L+  
Sbjct: 425 MNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLG 484

Query: 61  -YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             +  ++I + K+         +ID++ + G    A+ +   ++ + D ++W +++    
Sbjct: 485 RRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACR 544

Query: 119 IH 120
           IH
Sbjct: 545 IH 546


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/413 (46%), Positives = 273/413 (66%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP + VVSWN MI G+ ++  F EA+  FREM  ++V P+  T  SV+   +RLGAL   
Sbjct: 219 MPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELG 278

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH   +   I ++ +L +ALIDMY+KCG I+ A +VF+ + + +V  W+ +I+G+A+H
Sbjct: 279 KWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMH 338

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A D    F  ME   V+P  +T++GLL+ACSH GLV EGR +FDHM     ++P++EH
Sbjct: 339 GRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEH 398

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG MVDLLGRAG +EE+  LI +M ++PD V+W+ALL AC+    +E+G+    ++  L 
Sbjct: 399 YGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELA 458

Query: 241 ---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YV LSN+Y  L  W+    VR +MK+  VRK  G SW+EL GVIH+F   D SH
Sbjct: 459 PHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWIELDGVIHEFLVEDDSH 518

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+++ I  +L  + +     G+ P T  VL ++ EE+KE +L +HSEK+A+A+G++ T P
Sbjct: 519 PKSKKIHSMLQEMSRNLILVGYRPNTTQVLTNMDEEDKESSLNYHSEKIAIAFGLISTQP 578

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T +RI+KNLRIC DCHS IK+IS++ +R IIVRDR RFH F  G CSC DYW
Sbjct: 579 QTPLRITKNLRICEDCHSSIKLISKIYKRKIIVRDRKRFHHFVNGSCSCMDYW 631



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 116/267 (43%), Gaps = 51/267 (19%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLGALNH 59
           M   +  S+N++I     +    +AL  F EM+    VEP+ FTF SV   C R   L  
Sbjct: 71  MHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLRE 130

Query: 60  AYWVHNLIIE----------------------------------------------KKIE 73
              VH L ++                                              ++++
Sbjct: 131 GRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVD 190

Query: 74  LNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM 133
            + +L   +ID Y + G++++A+ +FD + +  V  WN MI+G A  G   +A  +F +M
Sbjct: 191 GDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREM 250

Query: 134 EMFNVLPDSITFLGLLTACSHCGLVEEGR-KYFDHMRSRYSIQPQLEHYGAMVDLLGRAG 192
           +M  V P+ +T + +L A S  G +E G+  +   +R+   +   L    A++D+  + G
Sbjct: 251 QMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLG--SALIDMYAKCG 308

Query: 193 HIEEAYGLITSMTMEPDVVVWRALLSA 219
            IE+A  +   +  + +VV W  +++ 
Sbjct: 309 SIEKALQVFEGLP-KRNVVTWSTIIAG 334


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/413 (45%), Positives = 268/413 (64%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  D +SWNS+I G V+N  FDE L+FF++ML +K++P+  +F+S++  CA L  L+  
Sbjct: 297 LPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLG 356

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  II  + + N  +++AL+DMY+KCG I+ A+ +FD ++  D+  W AMI G A+H
Sbjct: 357 KQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALH 416

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A DA ++F +ME+  V P+ + F+ +LTACSH GLV+E  KYF+ M   Y I P LEH
Sbjct: 417 GHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEH 476

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y A+ DLLGR G +EEAY  I+ M +EP   VW  LL+ACR  K +EL E     +  + 
Sbjct: 477 YAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVD 536

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    RW  A  +R  M+ KG++K    SW+E+   +H F AGD+SH
Sbjct: 537 PQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSH 596

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    I++ L  L+++ + EG++  T  VL DV EE+K   L  HSE+LA+ +GI+ T  
Sbjct: 597 PYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPA 656

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IR++KNLR+C DCH+  K IS+++ R I+VRD  RFH F+ G CSCGD+W
Sbjct: 657 GTTIRVTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 709



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 125/239 (52%), Gaps = 14/239 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+VSWN++I G  +N   ++AL   REM ++ + PD FT +SV+   A    L   
Sbjct: 196 MPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKG 255

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   I    + +  + ++LIDMY+KC ++  +  VF  + ++D   WN++I+G   +
Sbjct: 256 KEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQN 315

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
           G+  +    F +M +  + P+ ++F  ++ AC+H   +  G++   + +RSR+     + 
Sbjct: 316 GMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIA 375

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL----------SACRTFKRLEL 228
              A+VD+  + G+I  A  +   M +  D+V W A++           A   FKR+E+
Sbjct: 376 --SALVDMYAKCGNIRTARWIFDKMELY-DMVSWTAMIMGYALHGHAYDAISLFKRMEV 431



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 108/245 (44%), Gaps = 33/245 (13%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
            ++W S+I  +  +  F  +L FF +ML+S   PD   F SV+  C  +  L     VH 
Sbjct: 71  TLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHG 130

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMA-----------------------------K 96
            II   +  +     AL++MYSK   ++                               +
Sbjct: 131 CIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLR 190

Query: 97  EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
           +VF+ + + D+  WN +ISG A +G+  DA  +  +M   ++ PDS T   +L   +   
Sbjct: 191 KVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYV 250

Query: 157 LVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRA 215
            + +G++   + +R+ Y     +    +++D+  +   ++++  +   M  + D + W +
Sbjct: 251 NLLKGKEIHGYAIRNGYDADVFIG--SSLIDMYAKCTRVDDSCRVFY-MLPQHDGISWNS 307

Query: 216 LLSAC 220
           +++ C
Sbjct: 308 IIAGC 312


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/413 (45%), Positives = 261/413 (63%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP K+VV+WN++I G+ ++    EAL  F EM +  ++PD F   SV+  CA   AL   
Sbjct: 383 MPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQG 442

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   I    E N ++   L+D+Y+KCG +  A+++F+ +   DV  W  MI    IH
Sbjct: 443 KQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIH 502

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA A+F+KM+      D I F  +LTACSH GLV++G +YF  M+S Y + P+LEH
Sbjct: 503 GHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEH 562

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  +VDLLGRAGH++EA G+I +M++EPD  VW ALL ACR    +ELGE A  ++  L 
Sbjct: 563 YACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELD 622

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y   +RW+    +R++MK+KGV+K  G S + +   +  F  GDR+H
Sbjct: 623 PDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTH 682

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+++ I  +L  L ++ +  G++P T L L DV EE KE  L  HSEKLA+++GI+ TSP
Sbjct: 683 PQSEQIYAMLEILYEQMRKAGYVPNTNLALQDVEEEAKENILSSHSEKLAISFGIINTSP 742

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KNLR+C DCH+  K IS+++ R IIVRD  RFH  + G CSCGDYW
Sbjct: 743 GIPIRIMKNLRVCSDCHNATKFISKIVGREIIVRDANRFHHVKNGFCSCGDYW 795



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 121/219 (55%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DV SWN++IGG+  N++  EAL FF  M    ++P+  T  SV+  CA L AL   
Sbjct: 282 MPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQG 341

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   I    E N ++  AL++MY+KCG +  A ++F+ + + +V  WNA+ISG + H
Sbjct: 342 QQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQH 401

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A A+F +M+   + PDS   + +L AC+H   +E+G++   +   R   +  +  
Sbjct: 402 GHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYT-IRSGFESNVVV 460

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              +VD+  + G++  A  L   M  E DVV W  ++ A
Sbjct: 461 GTGLVDIYAKCGNVNTAQKLFERMP-EQDVVSWTTMILA 498



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 127/223 (56%), Gaps = 10/223 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVVSWN++I G+ +N +  EAL  F EM  + ++P+  T  SV+  CA L AL   
Sbjct: 181 MPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQG 240

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   I   IE + ++   L++MY+KCG +  A ++F+ +   DV+ WNA+I G +++
Sbjct: 241 KQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLN 300

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A A F +M++  + P+SIT + +L AC+H   +E+G++        Y+I+   E 
Sbjct: 301 SQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHG-----YAIRSGFES 355

Query: 181 Y----GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                 A+V++  + G++  AY L   M  + +VV W A++S 
Sbjct: 356 NDVVGNALVNMYAKCGNVNSAYKLFERMP-KKNVVAWNAIISG 397



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 119/214 (55%), Gaps = 2/214 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
            + V W   I G+V+N  +++ALR + +M  + + PDK  F SVI  C     L     V
Sbjct: 83  NNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKV 142

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  II +  E + I+  AL  MY+KCG ++ A++VFD + + DV  WNA+I+G + +G  
Sbjct: 143 HEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQP 202

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A A+F++M++  + P+S T + ++  C+H   +E+G++   +   R  I+  +     
Sbjct: 203 YEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYA-IRSGIESDVLVVNG 261

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           +V++  + G++  A+ L   M +  DV  W A++
Sbjct: 262 LVNMYAKCGNVNTAHKLFERMPIR-DVASWNAII 294



 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 2/116 (1%)

Query: 104 RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
           RN+  VW   I G   +G    A  ++ +M+   + PD + FL ++ AC     ++ GRK
Sbjct: 82  RNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRK 141

Query: 164 YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             + + +R   +  +    A+  +  + G +E A  +   M    DVV W A+++ 
Sbjct: 142 VHEDIIAR-GFESDVIVGTALASMYTKCGSLENARQVFDRMPKR-DVVSWNAIIAG 195


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/414 (47%), Positives = 270/414 (65%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVVSWNSM+  + +  + +EAL  F +M +  V+P + T  S++  CA LGAL+  
Sbjct: 349 MPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKG 408

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I + +IE+N I+  AL+DMY+KCGKI +A +VF+ ++  DV  WN +I+G+AIH
Sbjct: 409 LHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIH 468

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M+   V P+ ITF+ +L+ACSH G+V+EG+K  D M S Y I+P++EH
Sbjct: 469 GNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEH 528

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG ++DLL RAG +EEA  LI +M MEP+     ALL  CR     ELGE+    ++N+ 
Sbjct: 529 YGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQ 588

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y+LLSN+Y   K+WD A  VR +MK  G+ K  G S +EL G++H+F AGD SH
Sbjct: 589 PCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSH 648

Query: 298 PEAQAIDKILGSLIQRTKSE-GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           PE+  I + L  +  R KS  G+   T  VL+D+ EE+KE  L  HSEKLA+AYG+L   
Sbjct: 649 PESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLD 708

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
               IRI KNLR+C DCH  IK+IS++  R IIVRDR RFH FE G CSC D+W
Sbjct: 709 SKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 762



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 101/210 (48%), Gaps = 10/210 (4%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           +NS+I     +    EAL  +  ML S ++PD  T+  VI  C           VH  ++
Sbjct: 163 YNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVV 222

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
           +   E +  + ++LI +Y+    +  AK++F+     DV  WNAMI G   H     A  
Sbjct: 223 KSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARM 282

Query: 129 IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLL 188
           +F +M    V  D I++  ++   +  G ++E ++ FD M  R      L  + +M+   
Sbjct: 283 VFDRM----VCRDVISWNTMINGYAIVGKIDEAKRLFDEMPER-----NLVSWNSMLAGF 333

Query: 189 GRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
            + G++E+A+GL + M    DVV W ++L+
Sbjct: 334 VKCGNVEDAFGLFSEMPCR-DVVSWNSMLA 362



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 110/217 (50%), Gaps = 12/217 (5%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +DVVSWN+MI G+V++     A   F  M+      D  ++ ++I G A +G ++ A   
Sbjct: 259 RDVVSWNAMIDGYVKHVEMGHARMVFDRMVCR----DVISWNTMINGYAIVGKIDEA--- 311

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
              + ++  E N +   +++  + KCG ++ A  +F  +   DV  WN+M++  A  G  
Sbjct: 312 -KRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKP 370

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR-SRYSIQPQLEHYG 182
            +A A+F +M    V P   T + LL+AC+H G +++G     ++  +R  +   +    
Sbjct: 371 NEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVG--T 428

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A+VD+  + G I  A  +  +M  + DV+ W  +++ 
Sbjct: 429 ALVDMYAKCGKISLATQVFNAMESK-DVLAWNTIIAG 464


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/413 (44%), Positives = 266/413 (64%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D+D  SW+SM+  + +  R  +AL  +REM ++ V PD  T  SV+  C+ +GAL   
Sbjct: 163 MDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVG 222

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +    +EL+  L  ALIDMY+KCG I+ +  VF ++   DV  W++MI G+A H
Sbjct: 223 AEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANH 282

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA ++F++M    + P+ +TF+G+L +C+H GLV +G+KYF  M   + + P+++H
Sbjct: 283 GFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQH 342

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDLLGR+GHIEEA  LI  M  EPD V+WRALL ACR +K +E+ E A+  +  L 
Sbjct: 343 YGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLD 402

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y     W+    +R  ++++ +++  G+S +E    IH+F +GDRSH
Sbjct: 403 PHADGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQNTIHEFISGDRSH 462

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P ++ I K+LG ++ R +  G+ P T LVL D+ E+ KE  L  HSEKLA+A+G+L T  
Sbjct: 463 PRSKEIYKMLGEMMDRLRQAGYKPMTGLVLQDIDEQSKERALAEHSEKLAVAFGLLTTPA 522

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G+ +RI+KNLR C DCHS IK+I+ L  R +I+RDR RFH F  G CSC DYW
Sbjct: 523 GSTLRITKNLRACEDCHSAIKLIALLYERKLIIRDRNRFHHFSEGRCSCKDYW 575



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 93/216 (43%), Gaps = 41/216 (18%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P +DV   N M+  +V      EA R F  M     E D  ++ ++I+G           
Sbjct: 102 PRRDVFLCNVMLAAYVTRGEVAEARRVFDGMR----ERDMVSWNTMIHG----------- 146

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
                                   Y+  G++ +A+EVF+ +   D   W++M+S      
Sbjct: 147 ------------------------YAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGR 182

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
            + DA  ++ +M    V PD  T + +L+ACS  G +  G +    + S   ++  ++  
Sbjct: 183 RSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESN-GVELDVKLG 241

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
            A++D+  + G IE +  +  SM ++ DV+ W +++
Sbjct: 242 TALIDMYAKCGDIENSVRVFHSMPVK-DVLTWSSMI 276



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 12/158 (7%)

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           +  +  AL++ Y+K G+  +A+  FD   R DV + N M++     G  A+A  +F  M 
Sbjct: 74  DLFVRTALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAEARRVFDGMR 133

Query: 135 MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194
                 D +++  ++   +  G V+  R+ F+ M  R +       + +M+    +    
Sbjct: 134 E----RDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFS-----WSSMMSAYTKGRRS 184

Query: 195 EEAYGLITSM---TMEPDVVVWRALLSACRTFKRLELG 229
           ++A  L   M    + PD     ++LSAC     L +G
Sbjct: 185 KDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVG 222


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/410 (45%), Positives = 261/410 (63%), Gaps = 3/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D +SWNS++ G+V+N R++EALR FR+M+S+KV P    F+SVI  CA L  L+    +
Sbjct: 270 RDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQL 329

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  ++      N  +++AL+DMYSKCG IQ A+++FD +  +D   W A+I G A+HG  
Sbjct: 330 HGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHG 389

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A ++F +M+   V P+ + F+ +LTACSH GLV+E   YF+ M   Y +  +LEHY A
Sbjct: 390 HEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAA 449

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
           + DLLGRAG +EEAY  I+ M +EP   VW  LLS+C   K LEL E     I  I    
Sbjct: 450 VADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSEN 509

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G YVL+ NMY    RW     +R  ++KKG+RK    SW+E+    H F +GDRSHP  
Sbjct: 510 MGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSM 569

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
             I++ L +++++ + EG++  T  VL DV EE K   L+ HSE+LA+A+GI+ T PGT 
Sbjct: 570 DRINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTT 629

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IR++KN+RIC DCH  IK IS++  R IIVRD  RFH F  G CSCGDYW
Sbjct: 630 IRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGSCSCGDYW 679



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 105/214 (49%), Gaps = 2/214 (0%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           V++W S+I  F   + F  AL  F EM +S   PD   F SV+  C  +  L     VH 
Sbjct: 70  VLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHG 129

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
            I+   ++ +     AL++MYSK   I   ++VF+ + R DV  +N +I+G A  G+  D
Sbjct: 130 FIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYED 189

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           A  +  +M   ++ PD+ T   +L   S    V +G++   ++  R  I   +    ++V
Sbjct: 190 ALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYV-IRKGIDSDVYIGSSLV 248

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           D+  ++  IE++  + + +    D + W +L++ 
Sbjct: 249 DMYAKSARIEDSERVFSHL-YRRDSISWNSLVAG 281


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/418 (46%), Positives = 277/418 (66%), Gaps = 10/418 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KDVVSW +MI G ++   F EAL  F  ML+  + P+++T AS +  CA L AL+  
Sbjct: 194 MPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQG 253

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR--NDVSVWNAMISGVA 118
            W+H  I +  I++N  L A LIDMY+KCG+++ A ++F++  R    V  WNAMI G A
Sbjct: 254 RWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFA 313

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG + +A  +F +M++  V P+ +TF+ LL ACSH   VEEGR YF+ M S Y ++P+L
Sbjct: 314 VHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPEL 373

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE-----VAI 233
           EHYG +VDLLGRAG ++EA  +I+SM + PDV +W ALLSAC+  K  E+GE     V  
Sbjct: 374 EHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKIHKDAEMGERVGKIVKE 433

Query: 234 VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
           ++ + L  G +VLL+N+Y     W+ A  +RE + + G +K+ G S +EL G+ HQF  G
Sbjct: 434 LDPNHL--GCHVLLANIYSLTGNWNEARTLREKIAESGKKKTPGCSSIELNGMFHQFLVG 491

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSE-EEKEGNLYHHSEKLALAYGI 352
           DRSHP+ + +   L  +I + K  G++P +  VL+D+ + E++E  L  HSEKLA+A+G+
Sbjct: 492 DRSHPQTKQLYLFLDEMITKLKIAGYIPESGEVLLDIDDNEDRETALLKHSEKLAIAFGL 551

Query: 353 LKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + T+P T IRI KNLR+C DCH  IK IS++  R IIVRDRIR+H F+ G CSC DYW
Sbjct: 552 MNTTPKTPIRIVKNLRVCSDCHLAIKFISKVYDREIIVRDRIRYHHFKDGTCSCNDYW 609



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 110/252 (43%), Gaps = 37/252 (14%)

Query: 1   MPDKDVVSWNSMIG--GFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA------ 52
            P  D+  +N++I    F   +  D   +F   +   ++ P++++FA    GC       
Sbjct: 60  FPQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVL 119

Query: 53  ----------RLGALNHAYWVHNLIIEKKIELNFILSAALI-------DMYS-------- 87
                     +LG  N+ + V N +I   + L+F++ A  +       DMYS        
Sbjct: 120 EGEQVRVHAIKLGLENNLF-VTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGY 178

Query: 88  -KCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFL 146
            + GK+  A+++FD +   DV  W  MISG    G   +A  IF  M    + P+  T  
Sbjct: 179 ARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLA 238

Query: 147 GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT- 205
             L AC++   +++GR    +++ + +IQ        ++D+  + G +E A  L  S   
Sbjct: 239 SSLAACANLVALDQGRWMHVYIK-KNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPR 297

Query: 206 MEPDVVVWRALL 217
           ++  V  W A++
Sbjct: 298 LKRKVWPWNAMI 309


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/411 (43%), Positives = 267/411 (64%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + + V+WN+MI  +V+   F  A+  F++M S  V+P + T  S++  CA LGAL+   W
Sbjct: 95  NSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEW 154

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  I  K+++++ +L  ALIDMY KCG ++ A +VF  + R ++  WN++I G+ ++G 
Sbjct: 155 IHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGR 214

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A A F  ME   + PD +TF+G+L+ CSH GL+  G++YF  M   Y ++P +EHYG
Sbjct: 215 GEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYG 274

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            MVDLLGRAG+++EA  LI +M M+P+ +V  +LL AC+  K  +LGE     ++ +   
Sbjct: 275 CMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPC 334

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
            GG+YV LSN+Y  L RWD     R++M K+GV K+ G S +E+  ++H+F AGD SHP+
Sbjct: 335 DGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQ 394

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
              I+  L  + +  K +G +P T  VL D+ EEEKEG + +HSE++A+A+G++ T PG 
Sbjct: 395 FTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGK 454

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IR+ KNLR C DCHS +K+IS   +R IIVRDR RFH F  G CSC DYW
Sbjct: 455 TIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 505



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 103/195 (52%), Gaps = 6/195 (3%)

Query: 26  LRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM 85
           L F+  ML + V P K +F+ ++  CA  G        H  I++   E + IL   L+D 
Sbjct: 15  LGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDF 74

Query: 86  YSKCGKIQMAKEVFDTV-QRNDVSV-WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSI 143
           Y+K G ++ A+ +FD + +RN  SV WN MIS     G    A ++F +M+  NV P  +
Sbjct: 75  YAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEV 134

Query: 144 TFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
           T + LL+AC+H G ++ G     ++R+ R  I   L +  A++D+  + G +E A  +  
Sbjct: 135 TMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGN--ALIDMYCKCGALEAAIDVFH 192

Query: 203 SMTMEPDVVVWRALL 217
            ++ + ++  W +++
Sbjct: 193 GLSRK-NIFCWNSII 206


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/413 (44%), Positives = 271/413 (65%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M   D VSW++MIGG+VR  R  +A+  FREM    V PD+ T  SV+  C  LGAL   
Sbjct: 75  MYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGLGALELG 134

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WV + + +++++ N  LS ALIDM++KCG +  A  +F +++  ++  W ++I G+A+H
Sbjct: 135 KWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMH 194

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A A+F +M    V PD + F+GLL+ACSH GLV++G++YFD MR  +SI P++EH
Sbjct: 195 GRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEH 254

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR-- 238
           YG MVD+L RAG ++EA   +  M ++P+ VVWR L++ACR    L+LGE     + R  
Sbjct: 255 YGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQLIRNE 314

Query: 239 -LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
            +   +YVLLSN+Y  +  W+    +RE M  KG++K  G + +EL   I++F AGD+SH
Sbjct: 315 PMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIELDNEIYEFVAGDKSH 374

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            +++ I +++  + +  K  G++P T  VL+D+ +E+KE  L  HSEKLA+A+ +L T P
Sbjct: 375 AQSKEIYEMVDEMGKEMKRAGYMPTTTEVLLDIDDEDKEDTLNRHSEKLAIAFALLNTPP 434

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IRI KNLR+C DCHS  K IS++  R I+VRDR RFH F+ GLCSC D+W
Sbjct: 435 GTLIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHFKNGLCSCRDFW 487



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 104/192 (54%), Gaps = 6/192 (3%)

Query: 32  MLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKC-- 89
           ML  K  P+KFT+  V+  CA +G LN    VH  +++        +   L+ MY  C  
Sbjct: 1   MLERKKLPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRG 60

Query: 90  --GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLG 147
             G I+ A++VFD + ++D   W+AMI G    G ++DA  +F +M++  V PD IT + 
Sbjct: 61  GEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVS 120

Query: 148 LLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME 207
           +L+AC+  G +E G K+ +    +  +Q  +E   A++D+  + G +++A  L  SM  E
Sbjct: 121 VLSACTGLGALELG-KWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMR-E 178

Query: 208 PDVVVWRALLSA 219
            ++V W +++  
Sbjct: 179 RNIVSWTSVIGG 190


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/410 (43%), Positives = 267/410 (65%), Gaps = 3/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++ V+WN+MI  +V+   F  A+  F++M S  V+P + T  S++  CA LGAL+   W+
Sbjct: 168 RNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWI 227

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  I  K+++++ +L  ALIDMY KCG ++ A +VF  + R ++  WN++I G+ ++G  
Sbjct: 228 HGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRG 287

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A A F  ME   + PD +TF+G+L+ CSH GL+  G++YF  M   Y ++P +EHYG 
Sbjct: 288 EEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGC 347

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
           MVDLLGRAG+++EA  LI +M M+P+ +V  +LL AC+  K  +LGE     ++ +    
Sbjct: 348 MVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCD 407

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
           GG+YV LSN+Y  L RWD     R++M K+GV K+ G S +E+  ++H+F AGD SHP+ 
Sbjct: 408 GGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQF 467

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
             I+  L  + +  K +G +P T  VL D+ EEEKEG + +HSE++A+A+G++ T PG  
Sbjct: 468 TQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKT 527

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IR+ KNLR C DCHS +K+IS   +R IIVRDR RFH F  G CSC DYW
Sbjct: 528 IRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 577



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 112/220 (50%), Gaps = 15/220 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVV+ N+MI    ++   +EA   F  M     E +  ++ S+I    +LG +N A
Sbjct: 71  MPRRDVVANNAMISALSKHGYVEEARNLFDNM----TERNSCSWNSMITCYCKLGDINSA 126

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV--QRNDVSVWNAMISGVA 118
                L+ +     + +   A+ID Y K  ++  A+E+F  +   RN V+ WN MIS   
Sbjct: 127 ----RLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVT-WNTMISAYV 181

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQ 177
             G    A ++F +M+  NV P  +T + LL+AC+H G ++ G     ++R+ R  I   
Sbjct: 182 QCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVV 241

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           L +  A++D+  + G +E A  +   ++ + ++  W +++
Sbjct: 242 LGN--ALIDMYCKCGALEAAIDVFHGLSRK-NIFCWNSII 278



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 9/188 (4%)

Query: 32  MLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK 91
           ML + V P K +F+ ++  CA  G        H  I++   E + IL   L+D Y+K G 
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           ++ AK VF  + R DV   NAMIS ++ HG   +A  +F  M   N    S ++  ++T 
Sbjct: 61  LKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERN----SCSWNSMITC 116

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
               G +   R  FD    +  +      + A++D   ++  +  A  L   M    + V
Sbjct: 117 YCKLGDINSARLMFDCNPVKDVVS-----WNAIIDGYCKSKQLVAAQELFLLMGSARNSV 171

Query: 212 VWRALLSA 219
            W  ++SA
Sbjct: 172 TWNTMISA 179


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/415 (45%), Positives = 273/415 (65%), Gaps = 6/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KD+V+WNS+I GF  N + +EAL  + EM S  ++PD FT  S++  CA++GAL   
Sbjct: 182 MPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLG 241

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD-TVQRNDVSVWNAMISGVAI 119
             VH  +I+  +  N   S  L+D+Y++CG+++ AK +FD  V +N VS W ++I G+A+
Sbjct: 242 KRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVS-WTSLIVGLAV 300

Query: 120 HGLAADASAIFTKMEMFN-VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +G   +A  +F  ME    +LP  ITF+G+L ACSHCG+V+EG +YF  MR  Y I+P++
Sbjct: 301 NGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRI 360

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           EH+G MVDLL RAG +++AY  I SM M+P+VV+WR LL AC      +L E A + I +
Sbjct: 361 EHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQ 420

Query: 239 L---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L     GDYVLLSNMY   +RW   + +R+ M + GV+K  G S +E+   +H+F  GD+
Sbjct: 421 LEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDK 480

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SHP++ AI   L  +  R +SEG++P    V +DV EEEKE  + +HSEK+A+A+ ++ T
Sbjct: 481 SHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLIST 540

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              + I + KNLR+C DCH  IK++S++  R I+VRDR RFH F+ G CSC DYW
Sbjct: 541 PERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 109/214 (50%), Gaps = 3/214 (1%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +V  WN++I G+        A   +REM +S  VEPD  T+  +I     +  +     +
Sbjct: 84  NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H+++I         +  +L+ +Y+ CG +  A +VFD +   D+  WN++I+G A +G  
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKP 203

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A A++T+M    + PD  T + LL+AC+  G +  G++   +M  +  +   L     
Sbjct: 204 EEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM-IKVGLTRNLHSSNV 262

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           ++DL  R G +EEA  L   M ++ + V W +L+
Sbjct: 263 LLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLI 295


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/413 (45%), Positives = 260/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P +DVV+W +M+ G+ +    DEA+  FR M    ++PDK TF S +  C+    L   
Sbjct: 359 LPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEG 418

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  ++     L+  L +AL+ MY+KCG +  A+ VF+ +   +V  W AMI+G A H
Sbjct: 419 KSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQH 478

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A   F +M+   + PD +TF  +L+AC+H GLVEEGRK+F  M   Y I+P +EH
Sbjct: 479 GRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEH 538

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y   VDLLGRAGH+EEA  +I +M  +P   VW ALLSACR    +E GE A  N+ +L 
Sbjct: 539 YSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLD 598

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D   YV LSN+Y    R++ AE VR++M+K+ V K  G+SW+E+ G +H F   D+SH
Sbjct: 599 PDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSH 658

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PEA+ I   LG L ++ K +G++P T  VL DV EE+K   L  HSE+LA+ YG++KT P
Sbjct: 659 PEAKEIYAELGKLTEQIKEQGYVPDTRFVLHDVDEEQKVQTLCSHSERLAITYGLMKTPP 718

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IRI KNLR+C DCH+  K IS+++ R II RD  RFH F  G+CSCGD+W
Sbjct: 719 GTPIRIVKNLRVCGDCHTASKFISKVVGREIIARDAHRFHHFVDGVCSCGDFW 771



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 4/226 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+K+VV+W  +I G+ +  + D AL    +M  ++V P+K T+ S++ GC    AL H 
Sbjct: 258 LPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHG 317

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  II+        +  ALI MY KCG ++ A+++F  +   DV  W AM++G A  
Sbjct: 318 KKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQL 377

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLE 179
           G   +A  +F +M+   + PD +TF   LT+CS    ++EG+     +  + YS+   L+
Sbjct: 378 GFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQ 437

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKR 225
              A+V +  + G +++A  +   M+ E +VV W A+++ C    R
Sbjct: 438 --SALVSMYAKCGSMDDARLVFNQMS-ERNVVAWTAMITGCAQHGR 480



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 108/224 (48%), Gaps = 16/224 (7%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+++VSW +MI  FV   +  EA + +  M  +  +PDK TF S++        L     
Sbjct: 159 DRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQK 218

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  I +  +EL   +  +L+ MY+KCG I  A+ +FD +   +V  W  +I+G A  G 
Sbjct: 219 VHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQ 278

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
              A  +  KM+   V P+ IT+  +L  C+    +E G+K       RY IQ     YG
Sbjct: 279 VDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVH-----RYIIQ---SGYG 330

Query: 183 -------AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                  A++ +  + G ++EA  L   +    DVV W A+++ 
Sbjct: 331 REIWVVNALITMYCKCGGLKEARKLFGDLPHR-DVVTWTAMVTG 373



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 103/216 (47%), Gaps = 4/216 (1%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D ++ +  +    +  R  EAL     M+          F  ++  CARL +L     VH
Sbjct: 60  DTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVH 119

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             I++  I+ N  L   L+ MY+KCG +  A+ VFD ++  ++  W AMI          
Sbjct: 120 AAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNL 179

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLEHYGA 183
           +A   +  M++    PD +TF+ LL A ++  L++ G+K + +  ++   ++P++    +
Sbjct: 180 EAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVG--TS 237

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +V +  + G I +A  +   +  E +VV W  L++ 
Sbjct: 238 LVGMYAKCGDISKAQVIFDKLP-EKNVVTWTLLIAG 272


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/413 (46%), Positives = 269/413 (65%), Gaps = 3/413 (0%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            + +K +VSWN MI  ++ N+   EA+  F +M    V+PD  + ASV+  C  L AL   
Sbjct: 1255 LANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLG 1314

Query: 61   YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              +H  ++ K+++ N +L  ALIDMY+KCG ++ A+EVFD ++  DV  W +MIS   ++
Sbjct: 1315 RRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMN 1374

Query: 121  GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            G   DA ++F++M+   + PDSI F+ +L+ACSH GL++EGR YF  M     I P++EH
Sbjct: 1375 GKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEH 1434

Query: 181  YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
            +  MVDLLGRAG ++EAYG I  M MEP+  VW ALLSACR +  + +G +A   + +L 
Sbjct: 1435 FVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLC 1494

Query: 240  --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                G YVLLSN+Y    RW+    VR IMK KG++K  G S  EL   +H F AGD+SH
Sbjct: 1495 PEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSH 1554

Query: 298  PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            P+++ I + L  L+ + K  G++P T+  L DV EE+KE +L  HSEKLA+A+ IL T+P
Sbjct: 1555 PQSKQIYEELDVLVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAP 1614

Query: 358  GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G+ IRI+KNLR+C DCH   K+IS+++ R I +RD  RFH F  G+CSCGDYW
Sbjct: 1615 GSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 1667



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 110/232 (47%), Gaps = 6/232 (2%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            +P K+VV +N MI  +V N  + +AL  F+ M    ++PD +T+  V+   +    L   
Sbjct: 1086 IPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVG 1145

Query: 61   YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              +H  ++   ++LN  +   LI MY KCG +  A  V D +   DV  WN++++G A +
Sbjct: 1146 MQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARN 1205

Query: 121  GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            G   DA  +  +ME+  + PD+ T   LL A ++  L  +   +   M  + + +  L  
Sbjct: 1206 GQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCL--DNVSFVKEMFMKLANK-SLVS 1262

Query: 181  YGAMVDLLGRAGHIEEAYGLITSM---TMEPDVVVWRALLSACRTFKRLELG 229
            +  M+ +        EA  +   M    ++PD +   ++L AC     L LG
Sbjct: 1263 WNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLG 1314



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 2/155 (1%)

Query: 66   LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
            + I+  +  N  L   L+  Y+ CG+    + +FD + + +V  +N MI     + L +D
Sbjct: 1050 ICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSD 1109

Query: 126  ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
            A  +F  M    + PD  T+  +L A S    +  G +    +  R  +   +     ++
Sbjct: 1110 ALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAV-VRVGLDLNVFVGNGLI 1168

Query: 186  DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
             + G+ G + EA  ++  M    DVV W +L++ C
Sbjct: 1169 SMYGKCGCLVEACRVLDZMPCR-DVVSWNSLVAGC 1202


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/412 (47%), Positives = 267/412 (64%), Gaps = 6/412 (1%)

Query: 4    KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
            +++VSWNSM+  F  N R +E L  F EML     PD FT  SV+  CA  GAL     V
Sbjct: 870  RNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRV 929

Query: 64   HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT--VQRNDVSVWNAMISGVAIHG 121
            H  + +  +  N  +S ALID+Y+KCG +  A+ +F+   + R  VS W ++I G+A +G
Sbjct: 930  HVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVS-WTSLIVGLAANG 988

Query: 122  LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
               +A  +F+ ME   ++P  IT +G+L ACSHCGLV++G +YFD M+  Y I P++EH 
Sbjct: 989  FGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHL 1048

Query: 182  GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISR 238
            G MVDLLGRAG +EEAY  I +M +EP+ VVWR LL +C   K+LELG+VA   +V +  
Sbjct: 1049 GCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDP 1108

Query: 239  LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
               GDYVLLSN+Y  +  W     +R+ M K  VRK+ G S +EL   +++F  GDRSHP
Sbjct: 1109 GHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHP 1168

Query: 299  EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
            E++ I ++L  + +R + EG++P T  VL D+ EEEKE  L +HSE+LA+A+ +LK+ PG
Sbjct: 1169 ESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPG 1228

Query: 359  TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IRI KNLR+C DCH    +IS++  R IIVRDR RFH F+GG CSC DYW
Sbjct: 1229 IPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 1280



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 114/253 (45%), Gaps = 10/253 (3%)

Query: 5    DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
            D    N+++     + R   AL   R  L+    PD  T+  +I  CARL AL     +H
Sbjct: 771  DPFPLNTVLRIAAGSPRPRVALELHRRRLAL---PDTHTYPPLIQACARLLALREGECLH 827

Query: 65   NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ---RNDVSVWNAMISGVAIHG 121
                +        +  +L+ +Y  CG  + A +VFD +    RN VS WN+M++  A +G
Sbjct: 828  AEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVS-WNSMLNSFAANG 886

Query: 122  LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
               +   +F +M   +  PD  T + +LTAC+  G +  GR+   ++  +  +       
Sbjct: 887  RPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVE-KVGLVENSHVS 945

Query: 182  GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS--ACRTFKRLELGEVAIVNISRL 239
             A++DL  + G + +A  +   M +   VV W +L+   A   F +  L   +++   +L
Sbjct: 946  NALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKL 1005

Query: 240  MGGDYVLLSNMYC 252
            +  +  ++  +Y 
Sbjct: 1006 VPTEITMVGVLYA 1018


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/411 (45%), Positives = 266/411 (64%), Gaps = 1/411 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D+VSWN+MI G V N    EAL  FR M+     P++ T  SV+  C   GAL   
Sbjct: 134 MPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETG 193

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH  + +K++  +  L  AL+DMY+KCG +++A EVF  ++  +   WNAMI+G+A++
Sbjct: 194 KWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLRARNTCTWNAMINGLAMN 253

Query: 121 GLAADASAIFTKMEMF-NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           G +A A  +F +ME+   V PD +TF+G+L ACSH G V+ G+++F  +  +Y ++  LE
Sbjct: 254 GYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVELILE 313

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY  MVDLL R+GH++EA+ LIT M M+PDVVVWRALL  CR  K +++ E  I  +   
Sbjct: 314 HYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNVKMAENVISEMEAT 373

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             GD+VLLSN+Y  + RW+  E+VR  M+ KG+ K  G S +E+ G IH+F +GD+SHP 
Sbjct: 374 CSGDHVLLSNLYAAVGRWNGVEDVRRTMRSKGIEKIPGCSSVEMDGSIHEFISGDKSHPS 433

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
              I   L  +  R +  G++  T  V  D+ +EEKE  L +HSEKLA+A+G++   P  
Sbjct: 434 YDDIHAKLIEIGGRMQQHGYVTETAEVFYDIEDEEKEQALGYHSEKLAIAFGLIGGPPEA 493

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI KNLR C DCHS+ K++S++  R I+VRDR RFH F GG CSC D+W
Sbjct: 494 TIRIVKNLRFCTDCHSFAKLVSKIYHREIVVRDRARFHHFRGGACSCNDFW 544



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 110/238 (46%), Gaps = 29/238 (12%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIE 69
           N+ I G+    R  +A R F  M       D  +F S+I+G A  G +  A      + E
Sbjct: 50  NAFIQGYCSAGRVTDARRVFDGMPRR----DTVSFNSMIHGYAVSGDVGSA----QRLFE 101

Query: 70  KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAI 129
           + +    +   +++  + + G ++ A+ VF+ +   D+  WNAMISG   + L  +A  +
Sbjct: 102 RVLAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCL 161

Query: 130 FTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---KYFDHMRSRYSIQPQLEHYG-AMV 185
           F  M     +P+  T + +L+AC+  G +E G+    + +  R R+      E  G A+V
Sbjct: 162 FRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWD-----EFLGTALV 216

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS----------ACRTFKRLEL-GEVA 232
           D+  + G +E A  + T +    +   W A+++          A   F+++EL G VA
Sbjct: 217 DMYAKCGAVELALEVFTGLRAR-NTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVA 273


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/407 (46%), Positives = 262/407 (64%), Gaps = 4/407 (0%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           VSWN+MI G+ +N R  EAL  F EM S  ++PD FT  SVI   A L    HA W+H L
Sbjct: 416 VSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGL 475

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           II   ++ N  ++ AL+DMYSKCG I MA+++FD +    V  WNAMI G   HGL   A
Sbjct: 476 IIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAA 535

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186
             +F KM+   V P+ IT+L +++ACSH GLV+EG ++F  M+  Y ++P ++HYGAMVD
Sbjct: 536 LDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVD 595

Query: 187 LLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM---GGD 243
           LLGRAG I+EA+  I +M + P + V+ A   AC+  K +E+GE A   +  L    GG 
Sbjct: 596 LLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGY 655

Query: 244 YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAI 303
           +VLL+N+Y    +W     VR+ M+KKG++K+ G S +EL   +H F +G  +HP+++ I
Sbjct: 656 HVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRI 715

Query: 304 DKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIRI 363
              L  L+   K+ G++P T L+L DV ++ +E  L  HSEKLA+A+G+L TSPGT I +
Sbjct: 716 YAFLEELVYEIKAAGYVPDTNLIL-DVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIHV 774

Query: 364 SKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            KNLR+C DCH+  K IS +  R IIVRD  RFH F+ G+CSCGDYW
Sbjct: 775 RKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 3/172 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D+VSWN++I GF +N    +AL     M      PD  T  +V+   A +G L   
Sbjct: 208 MPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVG 267

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   I         +S AL DMYSKCG ++ A+ +FD + +  V  WN+M+ G   +
Sbjct: 268 KSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQN 327

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---KYFDHMR 169
           G    A A+F KM    + P  +T +  L AC+  G +E G+   K+ D + 
Sbjct: 328 GEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLN 379



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 125/303 (41%), Gaps = 47/303 (15%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           DK    +++M+ G+ +N+  + AL F   M    V+P  + F  ++  C     L     
Sbjct: 109 DKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKE 168

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  +I      N      +++MY+KC +I  A ++FD +   D+  WN +I+G + +G 
Sbjct: 169 IHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGF 228

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTAC------------------------------ 152
           A  A  +  +M+     PDSIT + +L A                               
Sbjct: 229 AKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTA 288

Query: 153 -----SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT-- 205
                S CG VE  R  FD M  +  +      + +M+D   + G  E+A  +   M   
Sbjct: 289 LADMYSKCGSVETARLIFDGMDQKTVVS-----WNSMMDGYVQNGEPEKAIAVFEKMLEE 343

Query: 206 -MEPDVVVWRALLSACRTFKRLELGEVAIVNISRL-MGGDYVLLS---NMYCYLKRWDTA 260
            ++P  V     L AC     LE G+     + +L +G D  +++   +MY   KR D A
Sbjct: 344 GIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIA 403

Query: 261 ENV 263
            ++
Sbjct: 404 SDI 406



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 18/150 (12%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + D+ V++WN+MI G+  +     AL  F +M    VEP+  T+ SVI  C+  G ++  
Sbjct: 511 ISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEG 570

Query: 61  Y-WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
                ++  +  +E +     A++D+  + G+I   KE +D ++   +S       G+ +
Sbjct: 571 LRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRI---KEAWDFIENMPIS------PGITV 621

Query: 120 HGLAADASAIFTKME--------MFNVLPD 141
           +G    A  I   +E        +F + PD
Sbjct: 622 YGAXXGACKIHKNIEVGEKAAKKLFELNPD 651



 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 2/154 (1%)

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
           L+I+  +    +    L+ ++SK G I  A  VF+ +     ++++ M+ G A +     
Sbjct: 71  LVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLET 130

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           A A   +M   +V P    F  LL  C     ++ G++    + +  S    +     +V
Sbjct: 131 ALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITN-SFAANVFAMTGVV 189

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++  +   I++AY +   M  E D+V W  +++ 
Sbjct: 190 NMYAKCRQIDDAYKMFDRMP-ERDLVSWNTIIAG 222


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/413 (46%), Positives = 263/413 (63%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++ VSWN+MI  +V++ R  EA   F  M    V  DKF  AS++  C  LGAL   
Sbjct: 212 MPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQG 271

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H  I +  IEL+  L+  +IDMY KCG ++ A EVF+ + +  +S WN MI G+A+H
Sbjct: 272 KWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMH 331

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +ME   V PD ITF+ +L+AC+H GLVEEG+ YF +M     ++P +EH
Sbjct: 332 GKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEH 391

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV---AIVNIS 237
           +G MVDLLGRAG +EEA  LI  M + PD  V  AL+ ACR     ELGE     ++ + 
Sbjct: 392 FGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELE 451

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLL+N+Y    RW+    VR++M  +GV+K+ G S +E    + +F AG R+H
Sbjct: 452 PHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAH 511

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+A+ I   L  +++  +S G++P T+ VL D+ EEEKE  LY+HSEKLA+A+G+LKT P
Sbjct: 512 PQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKP 571

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  +RISKNLRIC DCH   K+IS++  R II+RDR RFH F  G CSC DYW
Sbjct: 572 GETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 624



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 114/265 (43%), Gaps = 38/265 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA-------- 52
           +P  D   +N++  G++R       +  +  ML   V P+KFT+  +I  C         
Sbjct: 80  IPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEG 139

Query: 53  --------RLGALNHAYWVHNLI---------------IEKKIELNFILSAALIDMYSKC 89
                   + G     + ++NLI                +   + + +   +LI  YS+ 
Sbjct: 140 KQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQW 199

Query: 90  GKIQMAKEVFDTV-QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGL 148
           G +  A+EVF+ + +RN VS WNAMI+         +A A+F +M + NV+ D      +
Sbjct: 200 GFVDKAREVFELMPERNSVS-WNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASM 258

Query: 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
           L+AC+  G +E+G K+      +  I+   +    ++D+  + G +E+A  +   +  + 
Sbjct: 259 LSACTGLGALEQG-KWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELP-QK 316

Query: 209 DVVVWRALLSACRTFKRLELGEVAI 233
            +  W  ++       +   GE AI
Sbjct: 317 GISSWNCMIGGLAMHGK---GEAAI 338



 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 2/133 (1%)

Query: 87  SKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFL 146
           SK G +  A EVFD +   D  ++N +  G     LA +   ++++M   +V P+  T+ 
Sbjct: 65  SKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYP 124

Query: 147 GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM 206
            L+ AC     +EEG++   H+  ++           ++ +      +E+A  +  +M  
Sbjct: 125 PLIRACCIDYAIEEGKQIHAHVL-KFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMP- 182

Query: 207 EPDVVVWRALLSA 219
           + DVV W +L++ 
Sbjct: 183 QRDVVSWTSLITG 195


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/415 (45%), Positives = 273/415 (65%), Gaps = 6/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KD+V+WNS+I GF  N + +EAL  + EM S  ++PD FT  S++  CA++GAL   
Sbjct: 49  MPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLG 108

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT-VQRNDVSVWNAMISGVAI 119
             VH  +I+  +  N   S  L+D+Y++CG+++ AK +FD  V +N VS W ++I G+A+
Sbjct: 109 KRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVS-WTSLIVGLAV 167

Query: 120 HGLAADASAIFTKMEMFN-VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +G   +A  +F  ME    +LP  ITF+G+L ACSHCG+V+EG +YF  MR  Y I+P++
Sbjct: 168 NGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRI 227

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           EH+G MVDLL RAG +++AY  I SM M+P+VV+WR LL AC      +L E A + I +
Sbjct: 228 EHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQ 287

Query: 239 L---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L     GDYVLLSNMY   +RW   + +R+ M + GV+K  G S +E+   +H+F  GD+
Sbjct: 288 LEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDK 347

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SHP++ AI   L  +  R +SEG++P    V +DV EEEKE  + +HSEK+A+A+ ++ T
Sbjct: 348 SHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLIST 407

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              + I + KNLR+C DCH  IK++S++  R I+VRDR RFH F+ G CSC DYW
Sbjct: 408 PERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 462



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 83/155 (53%), Gaps = 2/155 (1%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+++I         +  +L+ +Y+ CG +  A +VFD +   D+  WN++I+G A +G 
Sbjct: 10  IHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGK 69

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A A++T+M    + PD  T + LL+AC+  G +  G++   +M  +  +   L    
Sbjct: 70  PEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM-IKVGLTRNLHSSN 128

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
            ++DL  R G +EEA  L   M ++ + V W +L+
Sbjct: 129 VLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLI 162


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/413 (46%), Positives = 264/413 (63%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KD+VSW +MI G+  N    EA+  F +M    V+PD +T   V+  CARLGAL   
Sbjct: 274 MPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELG 333

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WV  L+   +   N +L  ALID+Y+KCG +  A EVF  ++  D  VWNA+ISG+A++
Sbjct: 334 EWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMN 393

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    +  +F ++E   + PD  TF+GLL  C+H GLV+EGR+YF+ M   +S+ P +EH
Sbjct: 394 GYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEH 453

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDLLGRAG ++EA+ LI +M ME + +VW ALL ACR  +  +L E+A+  +  L 
Sbjct: 454 YGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELE 513

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G+YVLLSN+Y    +WD A  VR  M +K ++K  G SW+E+ G++H+F  GD+ H
Sbjct: 514 PWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYH 573

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P ++ I   L  L ++ K  G++P T+ VL D+ EEEKE  L  HSEKLA+A+G++  +P
Sbjct: 574 PLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFLGCHSEKLAIAFGLISATP 633

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IR+ KNLR+C DCH  IK+IS +  R I VRD  RFH F  G CSC DYW
Sbjct: 634 TAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDYW 686



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 127/220 (57%), Gaps = 4/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +PDK+VVSW ++I G++   +F EA+  FR +L   + PD FT   V+  C +LG LN  
Sbjct: 173 IPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSG 232

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H  I+E  +  N  +  +L+DMY+KCG ++ A+ VFD +   D+  W AMI G A++
Sbjct: 233 EWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALN 292

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLE 179
           GL  +A  +F +M+  NV PD  T +G+L+AC+  G +E G      + R+ +   P L 
Sbjct: 293 GLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLG 352

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A++DL  + G +  A+ +   M  E D VVW A++S 
Sbjct: 353 T--ALIDLYAKCGSMSRAWEVFKGMK-EKDRVVWNAIISG 389



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 120/264 (45%), Gaps = 43/264 (16%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           ++  WN+MI G V N  FD+A+ F+  M S    P+ FTF  V+  CARL  L     +H
Sbjct: 76  NIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIH 135

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
            L+++   + +  +  +L+ +Y+KCG ++ A +VFD +   +V  W A+ISG    G   
Sbjct: 136 TLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFR 195

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSH------------------------------ 154
           +A  +F ++   N+ PDS T + +L+AC+                               
Sbjct: 196 EAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLV 255

Query: 155 -----CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME-- 207
                CG +E+ R  FD M  +      +  +GAM+      G  +EA  L   M  E  
Sbjct: 256 DMYAKCGNMEKARSVFDGMPEK-----DIVSWGAMIQGYALNGLPKEAIDLFLQMQRENV 310

Query: 208 -PDVVVWRALLSACRTFKRLELGE 230
            PD      +LSAC     LELGE
Sbjct: 311 KPDCYTVVGVLSACARLGALELGE 334



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 67/142 (47%), Gaps = 6/142 (4%)

Query: 82  LIDMYSKCG----KIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFN 137
           L++M  +C          + +F  +++ ++ +WN MI G+  +    DA   +  M    
Sbjct: 48  LLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEG 107

Query: 138 VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEA 197
            LP++ TF  +L AC+    ++ G K    +  +      +    ++V L  + G++E+A
Sbjct: 108 FLPNNFTFPFVLKACARLLDLQLGVK-IHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDA 166

Query: 198 YGLITSMTMEPDVVVWRALLSA 219
           + +   +  + +VV W A++S 
Sbjct: 167 HKVFDDIP-DKNVVSWTAIISG 187


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/411 (47%), Positives = 268/411 (65%), Gaps = 4/411 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +DV+SWN+MI G+    + +EAL  F +M +  V+P + T  S++  CA LGAL+    +
Sbjct: 261 RDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHL 320

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  I + +IE+N I+  AL+DMY+KCGKI +A +VF+ ++  DV  WN +I+G+AIHG  
Sbjct: 321 HTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNV 380

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F +M+   V P+ ITF+ +L+ACSH G+V+EG+K  D M S Y I+P++EHYG 
Sbjct: 381 KEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGC 440

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
           ++DLL RAG +EEA  LI +M MEP+     ALL  CR     ELGE+    ++N+    
Sbjct: 441 VIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCH 500

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G Y+LLSN+Y   K+WD A  VR +MK  G+ K  G S +EL G++H+F AGD SHPE+
Sbjct: 501 SGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPES 560

Query: 301 QAIDKILGSLIQRTKSE-GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
             I + L  +  R KS  G+   T  VL+D+ EE+KE  L  HSEKLA+AYG+L      
Sbjct: 561 NKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKE 620

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI KNLR+C DCH  IK+IS++  R IIVRDR RFH FE G CSC D+W
Sbjct: 621 AIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 671



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 108/243 (44%), Gaps = 35/243 (14%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           +NS+I     +    EAL  +  ML S ++PD  T+  VI  C           VH  ++
Sbjct: 134 YNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVV 193

Query: 69  EKKIELN-FILSA------------------------------ALIDMYSKCGKIQMAKE 97
           +   E + +I+S+                              A+ID Y K  ++  A+ 
Sbjct: 194 KSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARM 253

Query: 98  VFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL 157
           VFD +   DV  WN MI+G AI G   +A A+F +M    V P   T + LL+AC+H G 
Sbjct: 254 VFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGA 313

Query: 158 VEEGRKYFDHMR-SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRAL 216
           +++G     ++  +R  +   +    A+VD+  + G I  A  +  +M  + DV+ W  +
Sbjct: 314 LDKGLHLHTYINDNRIEVNSIVG--TALVDMYAKCGKISLATQVFNAMESK-DVLAWNTI 370

Query: 217 LSA 219
           ++ 
Sbjct: 371 IAG 373



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 66/127 (51%), Gaps = 10/127 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KDV++WN++I G   +    EA + F+EM  + VEP+  TF +++  C+  G ++  
Sbjct: 359 MESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEG 418

Query: 61  YWVHNLI-----IEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMI 114
             + + +     IE K+E        +ID+ ++ G ++ A E+  T+    + S   A++
Sbjct: 419 QKLLDCMSSSYGIEPKVE----HYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALL 474

Query: 115 SGVAIHG 121
            G  IHG
Sbjct: 475 GGCRIHG 481


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/412 (44%), Positives = 274/412 (66%), Gaps = 4/412 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +KDV+SW SM+ G  ++  F E+L  FR+M   K+EPD+ T   V+  CA+ GAL+   +
Sbjct: 74  EKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALDQGKY 133

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H LI + +I  + +L  AL+DMY+KCG I +A +VF  ++  +V  WNAMI G+A+HG 
Sbjct: 134 IHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGH 193

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             DA ++F +ME   ++PD +TF+ LL ACSH GLV+EG   F  M++++ I+P++EHYG
Sbjct: 194 GEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYG 253

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            +VDLL RA  +++A   I +M ++ + V+W  LL ACR+    +L E     ++ +   
Sbjct: 254 CVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIXRRVIELEPD 313

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             G YV+LSN+Y  + +WD A  +R+ MK KG+ K+ G SW+EL G+IHQF AGDRSH +
Sbjct: 314 SCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQ 373

Query: 300 AQAIDKILGSLIQRTKSE-GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
            + I  ++  + +R   + G +P T  VL D+ EEEKE +L+ HSEKLA+A G++ T  G
Sbjct: 374 TEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSG 433

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + IRI KNLR+C+DCHS++K+ S++  R I+ RDR RFH F+ G CSC D+W
Sbjct: 434 SPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 485



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 105/182 (57%), Gaps = 2/182 (1%)

Query: 36  KVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMA 95
            + PD+ T  S++  CA+LG L     +H+   E  ++ N  ++ A++DMY KC  I+ A
Sbjct: 6   NLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESA 65

Query: 96  KEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHC 155
           +EVF+ ++  DV  W +M+SG+A  G   ++ A+F KM++  + PD IT +G+L+AC+  
Sbjct: 66  QEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQT 125

Query: 156 GLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRA 215
           G +++G KY   +  ++ I   L    A+VD+  + G I+ A  +   M +  +V  W A
Sbjct: 126 GALDQG-KYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-NVFTWNA 183

Query: 216 LL 217
           ++
Sbjct: 184 MI 185



 Score = 38.9 bits (89), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 130 FTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLG 189
            TK++  N+ PD +T + L+ AC+  G +E G K          +   L    A++D+  
Sbjct: 1   MTKLD--NLRPDEVTMVSLVPACAQLGNLERG-KLLHSYSKELGLDENLSVNNAILDMYC 57

Query: 190 RAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +   IE A  +   +  E DV+ W ++LS 
Sbjct: 58  KCDDIESAQEVFNRIR-EKDVLSWTSMLSG 86


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/413 (46%), Positives = 272/413 (65%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++DV+SWN MIGG+     + EAL  FREML+S VEP + TF S++  CA LGA++  
Sbjct: 322 MLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLG 381

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H  I +    ++  LS +LID+Y+KCG I  A++VFD ++   ++ WNAMI G+A+H
Sbjct: 382 KWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMH 441

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A  A  +F+KM    + P+ ITF+G+L+AC H GLV+ G+++F  M   Y I P+ +H
Sbjct: 442 GQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQH 501

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG M+DLLGRAG  EEA  L+ +M ++PD  +W +LL ACR   R+ELGE+    +  L 
Sbjct: 502 YGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELE 561

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    +WD    +R  +  +G++K  G + +E+  V+H+F  GD+ H
Sbjct: 562 PDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVH 621

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+++ I ++L  + ++ K  GF+  T  VL D+ EE KEG L HHSEKLA+A+G++ T P
Sbjct: 622 PQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKEGALSHHSEKLAIAFGLISTKP 681

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IRI KNLR+C +CHS  K+IS++  R II RDR RFH F+ G CSC DYW
Sbjct: 682 GTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCNDYW 734



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/268 (32%), Positives = 132/268 (49%), Gaps = 43/268 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KDVVSWN+MI G+ +  R  EAL  F +M  + V P++ T  SV+  CA+  AL+  
Sbjct: 221 MPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLG 280

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             + + I ++ +  N  L  ALIDMYSKCG +Q A+E+FD +   DV  WN MI G    
Sbjct: 281 NSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHM 340

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSH-------------------------- 154
               +A A+F +M    V P  ITFL +L +C+H                          
Sbjct: 341 CSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLS 400

Query: 155 ---------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
                    CG +   R+ FD M+ +      L  + AM+  L   G  ++A+ L + M+
Sbjct: 401 TSLIDLYAKCGNIVAARQVFDGMKIK-----SLASWNAMICGLAMHGQADKAFELFSKMS 455

Query: 206 ---MEPDVVVWRALLSACRTFKRLELGE 230
              +EP+ + +  +LSAC+    ++LG+
Sbjct: 456 SDGIEPNEITFVGILSACKHAGLVDLGQ 483



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 114/246 (46%), Gaps = 33/246 (13%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + ++  WNSMI G   +     AL FF  M+ S VEP+ +TF  ++  CA+L + +    
Sbjct: 91  EPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQ 150

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQ----------------------------- 93
           +H  +++     +  +  +LI+MY++ G++                              
Sbjct: 151 IHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGY 210

Query: 94  --MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
              A+++FD +   DV  WNAMI+G A  G + +A  +F  M   NV P+  T + +L+A
Sbjct: 211 MDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSA 270

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           C+    ++ G      +  R  +   L+   A++D+  + G ++ A  L   M +E DV+
Sbjct: 271 CAQSNALDLGNSMRSWIEDR-GLCSNLKLVNALIDMYSKCGDLQTARELFDDM-LERDVI 328

Query: 212 VWRALL 217
            W  ++
Sbjct: 329 SWNVMI 334



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 77/159 (48%), Gaps = 4/159 (2%)

Query: 63  VHNLIIEKKIELNFILSAALIDM--YSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           +H  II+  +       + LI+    S+ G I  A  +F++++  ++ +WN+MI G+++ 
Sbjct: 48  IHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMS 107

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
              A A   F +M    V P+S TF  LL +C+      EG++   H+     +     H
Sbjct: 108 LSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIH 167

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +++++  ++G +  A  L+   +   D + + AL++ 
Sbjct: 168 -TSLINMYAQSGEMNNAQ-LVFDQSNFRDAISFTALIAG 204


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/413 (46%), Positives = 257/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K+VVSW +MI GF +N   ++AL  F  ML   V P+  T  S +  C ++GAL   
Sbjct: 265 MPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVG 324

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +HN +     +LN  +  AL+DMY+KCG I+ A  VF   +  D+  W+ MI G AIH
Sbjct: 325 ERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIH 384

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A   F KM+   + PD + FL +LTACSH G V++G  +F+ MR  YSI+P ++H
Sbjct: 385 GCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKH 444

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  +VDLLGRAG ++EA   I SM + PD V+W AL  ACR  K +E+ E+    + +L 
Sbjct: 445 YTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLE 504

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YV LSN+Y  + RW+  E VR +MK +GV K  G S++E+ G +H F AGD +H
Sbjct: 505 PKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAH 564

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
             A+ I   L  +    K EG++P T  VL ++ EEEKE  L  HSEKLALA+G++ T+P
Sbjct: 565 VRAEEISLKLEEITASAKQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAP 624

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G+ IRI KNLR+C DCHS +K  S+L RR II+RD  RFH F+ G CSCGDYW
Sbjct: 625 GSTIRIVKNLRVCGDCHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 677



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 111/234 (47%), Gaps = 18/234 (7%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           ++  +N++I G   N+RF+ ++  F  ML   + PD+ T   V+   A L  +     +H
Sbjct: 102 NLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLH 161

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD-TVQRN---DVSVWNAMISGVAIH 120
             +++  +E +  +  +L+DMY K G++    ++FD + QRN    + +WN +I+G    
Sbjct: 162 GGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKV 221

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  + A+++F  M   N    + ++  L+      G ++  R+ F  M  +  +      
Sbjct: 222 GDLSKAASLFEAMPERN----AGSWNSLINGFVRNGDLDRARELFVQMPEKNVVS----- 272

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTME----PDVVVWRALLSACRTFKRLELGE 230
           +  M++   + G  E+A  +   M  E     D+ V  ALL AC     L++GE
Sbjct: 273 WTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALL-ACTKIGALQVGE 325



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 94/207 (45%), Gaps = 6/207 (2%)

Query: 11  SMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEK 70
           S++  +V+       L+ F E            +  +I GC ++G L+ A      + E 
Sbjct: 178 SLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAA----SLFEA 233

Query: 71  KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIF 130
             E N     +LI+ + + G +  A+E+F  +   +V  W  MI+G + +G    A ++F
Sbjct: 234 MPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMF 293

Query: 131 TKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGR 190
            +M    V P+ +T +  L AC+  G ++ G +  +++ S    Q       A+VD+  +
Sbjct: 294 WRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSN-GFQLNRGIGTALVDMYAK 352

Query: 191 AGHIEEAYGLITSMTMEPDVVVWRALL 217
            G+I+ A  +    T   D++ W  ++
Sbjct: 353 CGNIKSASRVFVE-TKGKDLLTWSVMI 378


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/412 (47%), Positives = 267/412 (64%), Gaps = 6/412 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +++VSWNSM+  F  N R +E L  F EML     PD FT  SV+  CA  GAL     V
Sbjct: 182 RNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRV 241

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT--VQRNDVSVWNAMISGVAIHG 121
           H  + +  +  N  +S ALID+Y+KCG +  A+ +F+   + R  VS W ++I G+A +G
Sbjct: 242 HVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVS-WTSLIVGLAANG 300

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              +A  +F+ ME   ++P  IT +G+L ACSHCGLV++G +YFD M+  Y I P++EH 
Sbjct: 301 FGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHL 360

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISR 238
           G MVDLLGRAG +EEAY  I +M +EP+ VVWR LL +C   K+LELG+VA   +V +  
Sbjct: 361 GCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDP 420

Query: 239 LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
              GDYVLLSN+Y  +  W     +R+ M K  VRK+ G S +EL   +++F  GDRSHP
Sbjct: 421 GHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHP 480

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           E++ I ++L  + +R + EG++P T  VL D+ EEEKE  L +HSE+LA+A+ +LK+ PG
Sbjct: 481 ESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPG 540

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             IRI KNLR+C DCH    +IS++  R IIVRDR RFH F+GG CSC DYW
Sbjct: 541 IPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 592



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 114/252 (45%), Gaps = 10/252 (3%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D    N+++     + R   AL   R  L+    PD  T+  +I  CARL AL     +H
Sbjct: 83  DPFPLNTVLRIAAGSPRPRVALELHRRRLAL---PDTHTYPPLIQACARLLALREGECLH 139

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ---RNDVSVWNAMISGVAIHG 121
               +        +  +L+ +Y  CG  + A +VFD +    RN VS WN+M++  A +G
Sbjct: 140 AEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVS-WNSMLNSFAANG 198

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              +   +F +M   +  PD  T + +LTAC+  G +  GR+   ++  +  +       
Sbjct: 199 RPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYV-EKVGLVENSHVS 257

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS--ACRTFKRLELGEVAIVNISRL 239
            A++DL  + G + +A  +   M +   VV W +L+   A   F +  L   +++   +L
Sbjct: 258 NALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKL 317

Query: 240 MGGDYVLLSNMY 251
           +  +  ++  +Y
Sbjct: 318 VPTEITMVGVLY 329


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/413 (44%), Positives = 268/413 (64%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++ V+WN++I G+  N +F +A+  FR ML+   +P + T   V+  C+ LGA N  
Sbjct: 150 MPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQG 209

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H  I   ++ LN  +  ALIDMY+KCG +   ++VF+ ++  +V  WN +ISG A++
Sbjct: 210 KWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMN 269

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A   F++M M N  PD +TFLG+L AC H GLV EGR  F  M+ ++ +QP++EH
Sbjct: 270 GQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEH 329

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDLLGRAG +EEA  LI SM++EPD ++WRALL ACR     +LGE  I  +  L 
Sbjct: 330 YGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELE 389

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              G +YVLLSN+Y   +RW     +R +M  +G+RK  G S +E+  V+++F A +   
Sbjct: 390 PNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRKVPGCSSIEINNVVYEFVASNDRK 449

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE +AI K L +LI++ K  G++  T++ L D+ +EEKE ++ +HSEKLALA+G+L +  
Sbjct: 450 PEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKLALAFGLLNSPL 509

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              +RI KNLRIC DCH + K++S + +R I+VRDR RFH F  G CSC DYW
Sbjct: 510 DCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 103/234 (44%), Gaps = 11/234 (4%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIE 69
           NSMI  ++   +   +L  F  M    + PD  TF +V+   A+L        +H ++I+
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 70  KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAI 129
                +   S AL+ +Y  C  I  A ++FD +   +   WNA+I+G   +     A   
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDA 177

Query: 130 FTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---KYFDHMRSRYSIQPQLEHYGAMVD 186
           F  M      P   T + +L+ACSH G   +G+   ++  H R R ++        A++D
Sbjct: 178 FRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGT----ALID 233

Query: 187 LLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           +  + G + E   +   +  E +V  W  L+S    +     G+ A+   SR++
Sbjct: 234 MYAKCGAVYEVEKVFEEIR-EKNVYTWNVLISG---YAMNGQGDAALQAFSRML 283


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/410 (45%), Positives = 261/410 (63%), Gaps = 3/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D +SWNS++ G+V+N R++EALR FR+M+++KV+P    F+SVI  CA L  L+    +
Sbjct: 306 RDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQL 365

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  ++      N  +++AL+DMYSKCG I+ A+++FD +   D   W A+I G A+HG  
Sbjct: 366 HGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHG 425

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A ++F +M+   V P+ + F+ +LTACSH GLV+E   YF+ M   Y +  +LEHY A
Sbjct: 426 HEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAA 485

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
           + DLLGRAG +EEAY  I+ M +EP   VW  LLS+C   K LEL E     I  +    
Sbjct: 486 VADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSEN 545

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G YVL+ NMY    RW     +R  M+KKG+RK    SW+E+    H F +GDRSHP  
Sbjct: 546 MGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSM 605

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
             I++ L +++++ + EG++  T  VL DV EE K   L+ HSE+LA+A+GI+ T PGT 
Sbjct: 606 DKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTT 665

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IR++KN+RIC DCH  IK IS++  R IIVRD  RFH F  G CSCGDYW
Sbjct: 666 IRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 107/250 (42%), Gaps = 38/250 (15%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           V++W S+I  F   + F +AL  F EM +S   PD   F SV+  C  +  L     VH 
Sbjct: 70  VLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHG 129

Query: 66  LIIEKKIELNFILSAALIDMYSKC----GKIQMA-------------------------- 95
            I+   ++ +     AL++MY+K      KI +                           
Sbjct: 130 FIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMP 189

Query: 96  ------KEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
                 + VF+ + R DV  +N +I+G A  G+  DA  +  +M   ++ PDS T   +L
Sbjct: 190 FGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVL 249

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
              S    V +G++   ++  R  I   +    ++VD+  ++  IE++  + + +    D
Sbjct: 250 PIFSEYVDVIKGKEIHGYV-IRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCR-D 307

Query: 210 VVVWRALLSA 219
            + W +L++ 
Sbjct: 308 GISWNSLVAG 317


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/413 (46%), Positives = 275/413 (66%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K+V SW SMI GFV+  + +EA+  F ++    V P++ T  SV+  CA LG L+  
Sbjct: 102 MPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLG 161

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH    +   + N  +   LIDMY KCG ++ A+ VF  ++   V  W+AMI+G+A+H
Sbjct: 162 RIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMH 221

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +A  +F++M    V P+ +TF+GLL ACSH GL++EGR++F  M + Y + PQ+EH
Sbjct: 222 GQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEH 281

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR-- 238
           YG +VDL  RAG +EEA+  I SM ++P+ VVW ALL  C+  K ++L E AI ++S   
Sbjct: 282 YGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELD 341

Query: 239 -LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
            L  G YV++SN+Y   +RW+ A  VR++MK +GV+K+ G S + + GV+H+F AGD++H
Sbjct: 342 PLNDGYYVVISNIYAEAERWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTH 401

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+A+ I KI   L+ + K  G+ P T +VL+D+ E+EKE  LY HSEKLA+ +G++ T  
Sbjct: 402 PQAEDICKIWDKLLVKMKRRGYAPKTSVVLLDMEEKEKEKFLYRHSEKLAVVFGLMTTPE 461

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IRI KNLR+C DCH+ +K+IS ++ R IIVRDR RFH F  G CSC D+W
Sbjct: 462 GTPIRIMKNLRVCEDCHAALKIISGIVSREIIVRDRNRFHCFRDGQCSCRDFW 514



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 91/214 (42%), Gaps = 33/214 (15%)

Query: 37  VEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAK 96
           V PD FT + V+  C +L  + +   +H L  +     N  L   ++++Y  CG++  A 
Sbjct: 6   VLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAM 65

Query: 97  EVFDTVQRNDVSVWN-------------------------------AMISGVAIHGLAAD 125
            +F+ + + D   WN                               +MISG    G   +
Sbjct: 66  LLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNE 125

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           A  +F K+E   V P+ +T + +L AC+  G ++ GR   ++  ++   +  +     ++
Sbjct: 126 AIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEY-STKSGFKRNVHVCNTLI 184

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           D+  + G +E A  +   M  E  VV W A+++ 
Sbjct: 185 DMYVKCGCLENARRVFYEME-ERTVVSWSAMIAG 217


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/413 (44%), Positives = 268/413 (64%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++ V+WN++I G+  N +F +A+  FR ML+   +P + T   V+  C+ LGA N  
Sbjct: 150 MPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQG 209

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H  I   ++ LN  +  ALIDMY+KCG +   ++VF+ ++  +V  WN +ISG A++
Sbjct: 210 KWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMN 269

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A   F++M M N  PD +TFLG+L AC H GLV EGR  F  M+ ++ +QP++EH
Sbjct: 270 GQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEH 329

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDLLGRAG +EEA  LI SM++EPD ++WRALL ACR     +LGE  I  +  L 
Sbjct: 330 YGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELE 389

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              G +YVLLSN+Y   +RW     +R +M  +G+RK  G S +E+  V+++F A +   
Sbjct: 390 PNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRKVPGCSSIEINNVVYEFVASNDRK 449

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE +AI K L +LI++ K  G++  T++ L D+ +EEKE ++ +HSEKLALA+G+L +  
Sbjct: 450 PEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKLALAFGLLNSPL 509

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              +RI KNLRIC DCH + K++S + +R I+VRDR RFH F  G CSC DYW
Sbjct: 510 DCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 103/234 (44%), Gaps = 11/234 (4%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIE 69
           NSMI  ++   +   +L  F  M    + PD  TF +V+   A+L        +H ++I+
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 70  KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAI 129
                +   S AL+ +Y  C  I  A ++FD +   +   WNA+I+G   +     A   
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDA 177

Query: 130 FTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---KYFDHMRSRYSIQPQLEHYGAMVD 186
           F  M      P   T + +L+ACSH G   +G+   ++  H R R ++        A++D
Sbjct: 178 FRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGT----ALID 233

Query: 187 LLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           +  + G + E   +   +  E +V  W  L+S    +     G+ A+   SR++
Sbjct: 234 MYAKCGAVYEVEKVFEEIR-EKNVYTWNVLISG---YAMNGQGDAALQAFSRML 283


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/413 (45%), Positives = 268/413 (64%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + +K +VSWN MI  ++ N+   EA+  F +M    V+PD  + ASV+  C  L AL   
Sbjct: 266 LANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLG 325

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  ++ K+++ N +L  ALIDMY+KCG ++ A+EVFD ++  DV  W +MIS   ++
Sbjct: 326 RRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMN 385

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA ++F++M+   + PDSI F+ +L+ACSH GL++EGR YF  M     I P++EH
Sbjct: 386 GKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEH 445

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           +  MVDLLGRAG ++EAYG I  M MEP+  VW ALLSACR +  + +G +A   + +L 
Sbjct: 446 FVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLC 505

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    RW+    VR IMK KG++K  G S  EL   +H F AGD+SH
Sbjct: 506 PEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSH 565

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+++ I + L   + + K  G++P T+  L DV EE+KE +L  HSEKLA+A+ IL T+P
Sbjct: 566 PQSKQIYEELDVSVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAP 625

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G+ IRI+KNLR+C DCH   K+IS+++ R I +RD  RFH F  G+CSCGDYW
Sbjct: 626 GSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 678



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 109/232 (46%), Gaps = 6/232 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P K+VV +N MI  +V N  + +AL  F+ M    ++PD +T+  V+   +    L   
Sbjct: 97  IPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVG 156

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  ++   ++LN  +   LI MY KCG +  A  V D +   DV  WN++++G A +
Sbjct: 157 MQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARN 216

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA  +  +ME+  + PD+ T   LL A ++  L  +   +   M  + +    L  
Sbjct: 217 GQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCL--DNVSFVKEMFMKLA-NKSLVS 273

Query: 181 YGAMVDLLGRAGHIEEAYGLITSM---TMEPDVVVWRALLSACRTFKRLELG 229
           +  M+ +        EA  +   M    ++PD +   ++L AC     L LG
Sbjct: 274 WNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLG 325



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 2/155 (1%)

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
           + I+  +  N  L   L+  Y+ CG+    + +FD + + +V  +N MI     + L +D
Sbjct: 61  ICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSD 120

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           A  +F  M    + PD  T+  +L A S    +  G +    +  R  +   +     ++
Sbjct: 121 ALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAV-VRVGLDLNVFVGNGLI 179

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
            + G+ G + EA  ++  M    DVV W +L++ C
Sbjct: 180 SMYGKCGCLVEACRVLDQMPCR-DVVSWNSLVAGC 213


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/414 (46%), Positives = 267/414 (64%), Gaps = 5/414 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  + VVSWN+MI G+  N  F +A+  FREM    + P+  T  SV+   +RLG+L   
Sbjct: 234 MRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG 293

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H    +  I ++ +L +ALIDMYSKCG I+ A  VF+ + R +V  W+AMI+G AIH
Sbjct: 294 EWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIH 353

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A DA   F KM    V P  + ++ LLTACSH GLVEEGR+YF  M S   ++P++EH
Sbjct: 354 GQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEH 413

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG MVDLLGR+G ++EA   I +M ++PD V+W+ALL ACR    +E+G+  + NI   M
Sbjct: 414 YGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGK-RVANILMDM 472

Query: 241 ----GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YV LSNMY     W     +R  MK+K +RK  G S +++ GV+H+F   D S
Sbjct: 473 VPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDS 532

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+A+ I+ +L  +  + +  G+ P T  VL+++ EE+KE  L++HSEK+A A+G++ TS
Sbjct: 533 HPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTS 592

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PG  IRI KNLRIC DCHS IK+IS++ +R I VRDR RFH F+ G CSC DYW
Sbjct: 593 PGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 127/269 (47%), Gaps = 54/269 (20%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEAL---RFFREMLSSK-VEPDKFTFASVIYGCARLGA 56
           MP ++  SWN++I GF  +   D+AL     F EM+S + VEP++FTF SV+  CA+ G 
Sbjct: 85  MPQRNCFSWNTIIRGFSESDE-DKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGK 143

Query: 57  LNHAYWVHNL------------------------------------IIEK---------K 71
           +     +H L                                    IIEK         K
Sbjct: 144 IQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRK 203

Query: 72  IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFT 131
            +   +L   +ID Y + G  + A+ +FD +++  V  WN MISG +++G   DA  +F 
Sbjct: 204 RDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFR 263

Query: 132 KMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS-IQPQLEHYGAMVDLLGR 190
           +M+  ++ P+ +T + +L A S  G +E G   + H+ +  S I+       A++D+  +
Sbjct: 264 EMKKGDIRPNYVTLVSVLPAISRLGSLELGE--WLHLYAEDSGIRIDDVLGSALIDMYSK 321

Query: 191 AGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            G IE+A  +   +  E +V+ W A+++ 
Sbjct: 322 CGIIEKAIHVFERLPRE-NVITWSAMING 349


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/413 (45%), Positives = 273/413 (66%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M   +V+ WN+MI G+ +N   +EA+  F+EM+S  +  D  T  S I  CA++G+L+ A
Sbjct: 331 MEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLA 390

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+ + I + +   +  ++ ALIDM++KCG + +A+EVFD     DV VW+AMI G  +H
Sbjct: 391 KWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLH 450

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA  +F  M+   V P+ +TF+GLLTAC+H GLVEEG + F  M+  Y I+ + +H
Sbjct: 451 GRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMK-YYGIEARHQH 509

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  +VDLLGR+GH+ EAY  IT+M +EP V VW ALL AC+ ++ + LGE A   + ++ 
Sbjct: 510 YACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLD 569

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YV LSN+Y   + WD+   VR +M++KG+ K  G S +E+ G +  F+ GD+SH
Sbjct: 570 PFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQAFRVGDKSH 629

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + I + L SL +R K  GF+P  E VL D+++EEKE  L +HSE+LA+AYG++ T+P
Sbjct: 630 PRFKEIFEELESLERRLKEAGFIPHIESVLHDLNQEEKEETLCNHSERLAIAYGLISTAP 689

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT +RI+KNLR C +CHS  K+IS+L+ R I+VRD  RFH F+ G+CSC DYW
Sbjct: 690 GTTLRITKNLRACINCHSATKLISKLVNREIVVRDANRFHHFKNGVCSCRDYW 742



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 118/217 (54%), Gaps = 2/217 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + D+++VSW SMI G+ +N    EALR F +M    V+PD     SV+     +  L   
Sbjct: 230 LDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQG 289

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++  +E    L  +L  MY+KCG++ +A+  FD ++  +V +WNAMISG A +
Sbjct: 290 KSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKN 349

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M   N+  DSIT    + AC+  G ++  +   D++ ++   +  +  
Sbjct: 350 GYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYI-NKTEYRNDVFV 408

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             A++D+  + G ++ A  +    T++ DVVVW A++
Sbjct: 409 NTALIDMFAKCGSVDLAREVF-DRTLDKDVVVWSAMI 444



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 115/268 (42%), Gaps = 43/268 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            P+  V  WN++I G+  +  F +A+  +  M +S V PD FT   V+  C+ +  L   
Sbjct: 129 FPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVG 188

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  I     E +  +   L+ +Y+KCG+++ A+ VF+ +   ++  W +MISG   +
Sbjct: 189 KRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQN 248

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTA---------------C------------- 152
           GL  +A  IF +M   NV PD I  + +L A               C             
Sbjct: 249 GLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLL 308

Query: 153 -------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM- 204
                  + CG V   R +FD M       P +  + AM+    + G+  EA GL   M 
Sbjct: 309 ISLTAMYAKCGQVMVARSFFDQMEI-----PNVMMWNAMISGYAKNGYTNEAVGLFQEMI 363

Query: 205 --TMEPDVVVWRALLSACRTFKRLELGE 230
              +  D +  R+ + AC     L+L +
Sbjct: 364 SKNIRTDSITVRSAILACAQVGSLDLAK 391



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 80/162 (49%), Gaps = 4/162 (2%)

Query: 59  HAYWVH-NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
           H   +H  L++   +E  F+++   ++     G+I  A++VFD      V +WNA+I G 
Sbjct: 86  HLNQIHAQLVVSGLVESGFLVTK-FVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGY 144

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           + H    DA  ++++M+   V PD  T   +L ACS   ++E G++    +  R   +  
Sbjct: 145 SSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQI-FRLGFESD 203

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +     +V L  + G +E+A  +   +  + ++V W +++S 
Sbjct: 204 VFVQNGLVALYAKCGRVEQARIVFEGLD-DRNIVSWTSMISG 244


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/413 (45%), Positives = 263/413 (63%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KDVVSW++MI G+ ++  F EAL  F+EM    V PD+    S I  C  L  L+  
Sbjct: 363 MPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLG 422

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H  I   K+++N ILS  LIDMY KCG ++ A EVF  ++   VS WNA+I G+A++
Sbjct: 423 KWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMN 482

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    +  +F  M+    +P+ ITF+G+L AC H GLV +GR YF+ M   + I+  ++H
Sbjct: 483 GSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKH 542

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE---VAIVNIS 237
           YG MVDLLGRAG ++EA  LI SM M PDV  W ALL ACR  +  E+GE     ++ + 
Sbjct: 543 YGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQ 602

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G +VLLSN+Y     W     +R IM + GV K+ G S +E  G +H+F AGD++H
Sbjct: 603 PDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKTH 662

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+   I+ +L  +  + K EG++P T  V +D+ EEEKE  L+ HSEKLA+A+G++  SP
Sbjct: 663 PQINDIEHMLDVVAAKLKIEGYVPTTSEVSLDIDEEEKETALFRHSEKLAVAFGLITISP 722

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T IR++KNLRIC+DCH+ +K+IS+   R I+VRDR RFH F+ G CSC D+W
Sbjct: 723 PTPIRVTKNLRICNDCHTVVKLISKAFDRDIVVRDRHRFHHFKHGACSCMDFW 775



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 117/247 (47%), Gaps = 34/247 (13%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++D+VSW++M+  + +N   +EAL  F EM  S V  D+    S +  C+R+  +    W
Sbjct: 232 ERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRW 291

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD---------------------- 100
           VH L ++  +E    L  ALI +YS CG+I  A+ +FD                      
Sbjct: 292 VHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCG 351

Query: 101 ----------TVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150
                     ++   DV  W+AMISG A H   ++A A+F +M++  V PD    +  ++
Sbjct: 352 SIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAIS 411

Query: 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
           AC+H   ++ G K+     SR  +Q  +     ++D+  + G +E A  +  +M  E  V
Sbjct: 412 ACTHLATLDLG-KWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAME-EKGV 469

Query: 211 VVWRALL 217
             W A++
Sbjct: 470 STWNAVI 476



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 116/257 (45%), Gaps = 13/257 (5%)

Query: 3   DKDVVSWNSMIGG--FVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + +  +WN+++    +++N+   +AL  ++  L+S  +PD +T+  ++  CA   +    
Sbjct: 66  NPNTFTWNTIMRAHLYLQNSPH-QALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEG 124

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   +    + +  +   L+++Y+ CG +  A+ VF+     D+  WN +++G    
Sbjct: 125 RQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQA 184

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F  M   N +  +     ++      G VE+ R+ F+ +R R   +  +  
Sbjct: 185 GEVEEAERVFEGMPERNTIASN----SMIALFGRKGCVEKARRIFNGVRGR---ERDMVS 237

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
           + AMV    +    EEA  L   M    +  D VV  + LSAC     +E+G        
Sbjct: 238 WSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAV 297

Query: 238 RLMGGDYVLLSNMYCYL 254
           ++   DYV L N   +L
Sbjct: 298 KVGVEDYVSLKNALIHL 314



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 100/232 (43%), Gaps = 45/232 (19%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P  D+VSWN+++ G+V+    +EA R F  M      P++                    
Sbjct: 167 PVLDLVSWNTLLAGYVQAGEVEEAERVFEGM------PER-------------------- 200

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV--QRNDVSVWNAMISGVAI 119
                        N I S ++I ++ + G ++ A+ +F+ V  +  D+  W+AM+S    
Sbjct: 201 -------------NTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQ 247

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           + +  +A  +F +M+   V  D +  +  L+ACS    VE GR +   +  +  ++  + 
Sbjct: 248 NEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGR-WVHGLAVKVGVEDYVS 306

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA---CRTFKRLEL 228
              A++ L    G I +A  +        D++ W +++S    C + +  E+
Sbjct: 307 LKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEM 358


>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/414 (47%), Positives = 268/414 (64%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVVSWNSM+  + +  + +EAL  F +M +  V+P + T  S++  CA LGAL+  
Sbjct: 174 MPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKG 233

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I + +IE+N I+  AL+DMY+KCGKI +A +VF+ ++  DV  WN +I+G+AIH
Sbjct: 234 LHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIH 293

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M+   V P+ ITF+ +L+ACSH G+V+EG+K  D M S Y I+P++EH
Sbjct: 294 GHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEH 353

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG ++DLL RAG +EEA  LI +M MEP+     ALL  CR     ELGE+    ++N+ 
Sbjct: 354 YGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFELGEMVGKRLINLQ 413

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y+LLSN+Y   K+WD A  VR +MK  G+ K  G S +EL G++H+F AGD SH
Sbjct: 414 PCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSH 473

Query: 298 PEAQAIDKILGSLIQRTKSE-GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           PE+  I + L  +  R KS  G    T  VL+D+ EE+KE  L  HSEKLA+AYG+L   
Sbjct: 474 PESNKIYEKLNEIHTRLKSAIGHSADTGDVLLDMEEEDKEHALPVHSEKLAIAYGLLHLD 533

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
               IRI KNLR+C DCH   K+IS++  R IIVRDR RFH FE G CSC D+W
Sbjct: 534 SKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 587



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 4/131 (3%)

Query: 90  GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
           GK   A  +F  +   DV  WN+M++  A  G   +A A+F +M    V P   T + LL
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 221

Query: 150 TACSHCGLVEEGRKYFDHMR-SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
           +AC+H G +++G     ++  +R  +   +    A+VD+  + G I  A  +  +M  + 
Sbjct: 222 SACAHLGALDKGLHLHTYINDNRIEVNSIVG--TALVDMYAKCGKISLATQVFNAMESK- 278

Query: 209 DVVVWRALLSA 219
           DV+ W  +++ 
Sbjct: 279 DVLAWNTIIAG 289


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/415 (45%), Positives = 274/415 (66%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + ++D +SWNS+I G V+N RFD+ L FFR ML  KV+P + +F+SVI  CA L ALN  
Sbjct: 260 LSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLG 319

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ--RNDVSVWNAMISGVA 118
             +H  II    + N  ++++L+DMY+KCG I+MA+ +F+ ++    D+  W A+I G A
Sbjct: 320 KQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCA 379

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG A DA ++F +M +  V P  + F+ +LTACSH GLV+EG KYF+ M+  + + P L
Sbjct: 380 MHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGL 439

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           EHY A+ DLLGRAG +EEAY  I++M  EP   VW  LL+ACR  K +EL E  +  I  
Sbjct: 440 EHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILL 499

Query: 239 LMGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           +  G+   +V++SN+Y   +RW  A  +R  M+K G++K+   SW+E+   +H F AGD+
Sbjct: 500 VDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDK 559

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SHP    I++ L  L+++ + EG++  T  VL DV EE K   L  HSE+LA+A+GI+ T
Sbjct: 560 SHPYYDKINEALNILLEQMEKEGYVLDTNEVLHDVDEEHKRDLLRTHSERLAIAFGIIST 619

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + GT IR+ KN+R+C DCH+ IK +++++ R IIVRD  RFH F+ G CSCGDYW
Sbjct: 620 TSGTTIRVIKNIRVCVDCHTAIKFMAKIVGREIIVRDNSRFHHFKNGSCSCGDYW 674



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 110/221 (49%), Gaps = 2/221 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVVSWN++I G  +N  ++EAL   +EM    + PD FT +S++        +   
Sbjct: 159 MPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKG 218

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   I    + +  + ++LIDMY+KC +++++   F  +   D   WN++I+G   +
Sbjct: 219 KEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQN 278

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G        F +M    V P  ++F  ++ AC+H   +  G++   ++  R         
Sbjct: 279 GRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYI-IRLGFDDNKFI 337

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTM-EPDVVVWRALLSAC 220
             +++D+  + G+I+ A  +   + M + D+V W A++  C
Sbjct: 338 ASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGC 378



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/248 (20%), Positives = 104/248 (41%), Gaps = 30/248 (12%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           ++W  +I  +  +     +L  F  + S  + PD+  F S++         N A  +H  
Sbjct: 42  LAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAA 101

Query: 67  IIEKKIELNFILSAALIDMYSK----------------------CGKIQMAKEVFDTVQR 104
           +I      +   + AL++MYSK                        KI   +++FD +  
Sbjct: 102 VIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPV 161

Query: 105 NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKY 164
            DV  WN +I+G A +G+  +A  +  +M   N+ PDS T   +L   +    V +G++ 
Sbjct: 162 RDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEI 221

Query: 165 FDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE---AYGLITSMTMEPDVVVWRALLSACR 221
             +   R+     +    +++D+  +   +E    A+ L+++     D + W ++++ C 
Sbjct: 222 HGYA-IRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNR----DAISWNSIIAGCV 276

Query: 222 TFKRLELG 229
              R + G
Sbjct: 277 QNGRFDQG 284


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/415 (46%), Positives = 263/415 (63%), Gaps = 5/415 (1%)

Query: 1   MP--DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALN 58
           MP  D++ VSWN+MI  +V++ R  EA   F  M    V  DKF  AS++  C  LGAL 
Sbjct: 155 MPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALE 214

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
              W+H  I +  IEL+  L+  +IDMY KCG ++ A EVF+ + +  +S WN MI G+A
Sbjct: 215 QGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLA 274

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG    A  +F +ME   V PD ITF+ +L+AC+H GLVEEG+ YF +M     ++P +
Sbjct: 275 MHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGM 334

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV---AIVN 235
           EH+G MVDLLGRAG +EEA  LI  M + PD  V  AL+ ACR     ELGE     ++ 
Sbjct: 335 EHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIE 394

Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           +     G YVLL+N+Y    RW+    VR++M  +GV+K+ G S +E    + +F AG R
Sbjct: 395 LEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGR 454

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           +HP+A+ I   L  +++  +S G++P T+ VL D+ EEEKE  LY+HSEKLA+A+G+LKT
Sbjct: 455 AHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKT 514

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            PG  +RISKNLRIC DCH   K+IS++  R II+RDR RFH F  G CSC DYW
Sbjct: 515 KPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 569



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 99/222 (44%), Gaps = 9/222 (4%)

Query: 15  GFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIEL 74
           G++R       +  +  ML   V P+KFT+  +I  C    A+     +H  +++     
Sbjct: 68  GYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGA 127

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTV---QRNDVSVWNAMISGVAIHGLAADASAIFT 131
           +      LI MY     ++ A+ VFD +    RN VS WNAMI+         +A A+F 
Sbjct: 128 DGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVS-WNAMIAAYVQSNRLHEAFALFD 186

Query: 132 KMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRA 191
           +M + NV+ D      +L+AC+  G +E+G K+      +  I+   +    ++D+  + 
Sbjct: 187 RMRLENVVLDKFVAASMLSACTGLGALEQG-KWIHGYIEKSGIELDSKLATTVIDMYCKC 245

Query: 192 GHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI 233
           G +E+A  +   +  +  +  W  ++       +   GE AI
Sbjct: 246 GCLEKASEVFNELP-QKGISSWNCMIGGLAMHGK---GEAAI 283


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/413 (44%), Positives = 268/413 (64%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + ++D + WN MI G+ ++   +E L  FR+ML++KV P++ T  +V+  C + GAL   
Sbjct: 32  LEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRPNEVTVLAVLSACGQTGALETG 91

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH+ I    I +N  +  +LIDMYSKCG ++ A+ VF+ +   DV  WN+M+ G A+H
Sbjct: 92  RWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVVAWNSMVVGYAMH 151

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G + DA  +F +M M    P  ITF+G+L ACSH GLV EG K+F  M+  Y I+P++EH
Sbjct: 152 GFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKFFYSMKDEYGIEPKVEH 211

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MV+LLGRAG++EEAY L+ +M ++ D V+W  LL ACR    + LGE     +V+ +
Sbjct: 212 YGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHGNIALGEQIAEYLVSQN 271

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y     W+    VR +MK+ G  K  G S +E+   +H+F AGD  H
Sbjct: 272 LANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGFEKEPGCSSIEVNNKVHEFLAGDLRH 331

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+++ I ++L  +    K+ G+ P T++VL D+ + +KE +L  HSEKLALA+G++ T P
Sbjct: 332 PKSREIYEMLEEINGWLKTHGYTPQTDIVLHDLEDAQKERSLGVHSEKLALAFGLITTKP 391

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT I+I KNLR+C DCH+  K+IS++  R +++RDR RFH F  GLCSCGDYW
Sbjct: 392 GTTIKIVKNLRVCADCHAVTKLISKITGRKVVMRDRNRFHHFVNGLCSCGDYW 444



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 2/145 (1%)

Query: 73  ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTK 132
           E + +   A+I  Y+K G I  A+ +FD ++  D   WN MI G A HGL  +   +F +
Sbjct: 3   EKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQ 62

Query: 133 MEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAG 192
           M    V P+ +T L +L+AC   G +E GR    ++ +   I   +    +++D+  + G
Sbjct: 63  MLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENN-GIGINVRVGTSLIDMYSKCG 121

Query: 193 HIEEAYGLITSMTMEPDVVVWRALL 217
            +E+A  L+       DVV W +++
Sbjct: 122 SLEDAR-LVFERISNKDVVAWNSMV 145


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/414 (46%), Positives = 265/414 (64%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KD V WN+MI G+ ++ R +EALR FR ML S VEPD+ T   V+   A+LG +   
Sbjct: 479 LPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESG 538

Query: 61  YWVHNLIIE-KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
            W+H+ +   ++++L+  +  ALIDMY KCG +  A +VF  +   D+ VWNAMI+G A+
Sbjct: 539 KWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAM 598

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG +  A  +F +     + P  ITF+GLL ACSH G+VEEGR++F  M   Y I P++E
Sbjct: 599 HGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIE 658

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG-EVAIVNISR 238
           HYG MVDLLGRAG I+EA+ L+ SM + PD V+W +LL+ACR  K + LG ++A   +++
Sbjct: 659 HYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAK 718

Query: 239 LMG--GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
            +   G Y+LLSN+Y  +  W     VR +MK  G++K  G S +E+   +++F AGD S
Sbjct: 719 GLANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFVAGDMS 778

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP    I  +L  +    K  G +P TELVL D+ E  KE  L  HSEKLALA+G++ T 
Sbjct: 779 HPRTDEIYVMLDKMNGLVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLALAFGLISTQ 838

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PG  I+I KNLR C DCH+ +K+ISR+  R I+ RDR RFH F  G CSCGDYW
Sbjct: 839 PGATIKIVKNLRACSDCHAVLKLISRITGRKIVFRDRNRFHHFVDGSCSCGDYW 892



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 73/138 (52%), Gaps = 1/138 (0%)

Query: 81  ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP 140
           A++  Y+  G +  A+ +FD +   D   WNAMI G   HG   +A  +F +M    V P
Sbjct: 458 AMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEP 517

Query: 141 DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL 200
           D +T + +L+A +  G VE G+    ++++   +Q  +    A++D+  + G + +A  +
Sbjct: 518 DEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDV 577

Query: 201 ITSMTMEPDVVVWRALLS 218
              +  + D+VVW A+++
Sbjct: 578 FHGIG-DKDIVVWNAMIN 594


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/413 (45%), Positives = 273/413 (66%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++V SW SMIGG+ +  +  EA+  F EM  + + P++ T  +V+  CA +G L   
Sbjct: 205 MPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLG 264

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+       E N  +   LIDMY KCG ++ A  +FD ++   V  W+AMI+G+A H
Sbjct: 265 RRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAH 324

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A DA A+F KM    V P+++TF+G+L ACSH G+VE+GRKYF  M   Y I P++EH
Sbjct: 325 GRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEH 384

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR-- 238
           YG MVDL  RAG ++EA+  I +M + P+ VVW ALL  C+  K ++L E A  ++S+  
Sbjct: 385 YGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLD 444

Query: 239 -LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
            L  G YV+LSN+Y    RW+    VR++M+ +GV+K+ G S + + GV++ F AGD +H
Sbjct: 445 PLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTH 504

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I +    L+QR K +G++P T +VL+D+ E++KE  LY HSEKLA+ +G++KT+P
Sbjct: 505 PQTEEIFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTP 564

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IRI KNLR+C DCH+ +K+IS +  R I+VRDR RFH F+ G CSCGDYW
Sbjct: 565 GTVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 617



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 115/254 (45%), Gaps = 33/254 (12%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +V  WN+ +  F       +A+  F  +    + PD +T + V+  C+RL  + +   VH
Sbjct: 77  EVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVH 136

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWN------------- 111
             + +  ++ N  L   ++ +Y+ CG+I +A++VFD + + DV  WN             
Sbjct: 137 GYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAE 196

Query: 112 ------------------AMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
                             +MI G A  G + +A  +F +ME   +LP+ +T + +L AC+
Sbjct: 197 GAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACA 256

Query: 154 HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVW 213
             G +  GR+  D   +R   +  +     ++D+  + G +E+A  +  +M  E  VV W
Sbjct: 257 DMGNLVLGRRIHD-FSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNME-ERTVVSW 314

Query: 214 RALLSACRTFKRLE 227
            A+++      R E
Sbjct: 315 SAMIAGLAAHGRAE 328



 Score = 44.7 bits (104), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 2/124 (1%)

Query: 95  AKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
           AK +F  +  ++V+ WN  +   A     ADA ++F ++  F++ PD  T   +L ACS 
Sbjct: 66  AKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSR 125

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
              V  G+    ++  +  +Q  +     +V L    G I  A  +   M  + DV+ W 
Sbjct: 126 LLDVRNGKIVHGYVE-KLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMP-QRDVITWN 183

Query: 215 ALLS 218
            +++
Sbjct: 184 IMIA 187


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/413 (44%), Positives = 266/413 (64%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +PD+++VSWN++I G+  N  F + +  FREM  +  +P + T   V+  CA LGALN  
Sbjct: 203 IPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGALNQG 262

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+ + I   ++ LN  +  ALIDMY+KCG +  A+++F  ++  +V  WN +ISG A++
Sbjct: 263 RWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMN 322

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A   F++M M    PD +TFLG+L AC H GLV EGR YF  M+  + ++P++EH
Sbjct: 323 GRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEH 382

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDLLGRAG ++EA  LI +M+M+PD ++WR LL ACR    ++LGE AI  +  L 
Sbjct: 383 YGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQLGEFAIKKLLELE 442

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              G +YVLL+N+Y   +RWD    VRE+M  + VRK  G S +E+  V+++F   +   
Sbjct: 443 PNNGENYVLLANLYARDQRWDKVGEVREMMDCRRVRKVPGCSSIEIDNVVYEFVVSNYIK 502

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + + K+L  + ++ K  G++  T +   D+ EEEKE +L +HSEKLALA+G+LK+  
Sbjct: 503 PGFEEVYKLLADMNKKLKLAGYVADTGMASYDIEEEEKEHSLMYHSEKLALAFGLLKSPS 562

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  +RI KNLRIC DCH + K++S++ RR I VRDR RFH F GG CSC DYW
Sbjct: 563 GLTLRIVKNLRICQDCHGFFKIVSKVYRRDISVRDRNRFHHFVGGACSCKDYW 615



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 119/234 (50%), Gaps = 11/234 (4%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIE 69
           NSMI  +  + +   ++  + +M  + + PD  TF +V+   A+L        +H  II+
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170

Query: 70  KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAI 129
              E N  +S AL++MY  C  +  A++VFD +   ++  WNA+I+G   + +      +
Sbjct: 171 MGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDV 230

Query: 130 FTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---KYFDHMRSRYSIQPQLEHYGAMVD 186
           F +M++    P  +T +G+L AC+H G + +GR    Y DH R R ++        A++D
Sbjct: 231 FREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGT----ALID 286

Query: 187 LLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           +  + G ++EA  +  +M ++ +V  W  L+S      R   GE A+   SR++
Sbjct: 287 MYAKCGVVDEAEKIFKAMRVK-NVYTWNVLISGYAMNGR---GESALQAFSRMI 336


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/410 (46%), Positives = 262/410 (63%), Gaps = 4/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K +VSWN+MI G+ +N R +EA+ +F +M    ++PD FT  SVI   A L  L  A W+
Sbjct: 441 KTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWI 500

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H L+I   ++ N  ++ AL+DMY+KCG +  A+++FD +    V+ WNAMI G   HGL 
Sbjct: 501 HGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLG 560

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  +F KM+   + P+ +TFL +L+ACSH GLVEEG +YF  M+  Y ++P ++HYGA
Sbjct: 561 KAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGA 620

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
           MVDLLGRA  + EA+  I  M +EP + V+ A+L ACR  K +ELGE A   I ++    
Sbjct: 621 MVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDD 680

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
           GG +VLL+N+Y     WD    VR  M+KKG++K+ G S +EL   +H F +G  SHP+A
Sbjct: 681 GGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQA 740

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + I   L +L  R K+ G++P T  V  DV +  KE  L  HSEKLA+A+ +L TSPGT 
Sbjct: 741 KKIYAFLETLGNRIKAAGYMPDTNSV-HDVEDVVKEQLLNSHSEKLAIAFSLLNTSPGTT 799

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           I + KNLR+C DCH+  K IS + +R IIVRD  RFH F+ G CSCGDYW
Sbjct: 800 IHLRKNLRVCGDCHNATKYISLVTKREIIVRDMRRFHHFKDGTCSCGDYW 849



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 124/267 (46%), Gaps = 43/267 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K VVSWNSMI G+V+N     A+  F++M+  +VE    T    ++ CA LG +   
Sbjct: 337 MTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQG 396

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            +VH L+ + ++  +  +  +LI MYSKC ++ +A E+F+ +Q   +  WNAMI G A +
Sbjct: 397 RFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQN 456

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSH-------------------------- 154
           G   +A   F KM++ N+ PDS T + ++ A +                           
Sbjct: 457 GRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVA 516

Query: 155 ---------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
                    CG V   RK FD M  R+     +  + AM+D  G  G  + A  L   M 
Sbjct: 517 TALVDMYAKCGAVHTARKLFDMMDERH-----VTTWNAMIDGYGTHGLGKAALELFEKMK 571

Query: 206 ME---PDVVVWRALLSACRTFKRLELG 229
            E   P+ V +  +LSAC     +E G
Sbjct: 572 KEVIKPNEVTFLCVLSACSHSGLVEEG 598



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 83/162 (51%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D+V WN++I G+ +N     AL     M      PD  T  S++   A +G+L   
Sbjct: 236 MPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIG 295

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   +    E    +S AL+DMYSKCG +  A+ +FD +    V  WN+MI G   +
Sbjct: 296 RSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQN 355

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR 162
           G    A  IF KM    V   ++T +G L AC+  G VE+GR
Sbjct: 356 GDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGR 397



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 116/248 (46%), Gaps = 21/248 (8%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           +++M+ G+ RN+  D+A+ FF  M    V P  + F  ++  C     L     +H  +I
Sbjct: 143 YHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLI 202

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
                 N      +++MY+KC  ++ A ++FD +   D+  WN +ISG A +G    A  
Sbjct: 203 VNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALE 262

Query: 129 IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY----GAM 184
           +  +M+     PDSIT + +L A +  G +  GR         YS++   E +     A+
Sbjct: 263 LVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHG-----YSMRAGFESFVNVSTAL 317

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL----------SACRTFKRLELGEVAIV 234
           VD+  + G +  A  +   MT +  VV W +++          +A   F+++   +V + 
Sbjct: 318 VDMYSKCGSVGTARLIFDRMTGK-TVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMT 376

Query: 235 NISRLMGG 242
           N++ +MG 
Sbjct: 377 NVT-VMGA 383



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 61/125 (48%), Gaps = 8/125 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++ V +WN+MI G+  +     AL  F +M    ++P++ TF  V+  C+  G +   
Sbjct: 539 MDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEG 598

Query: 61  Y-WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR----NDVSVWNAMIS 115
           + +  ++  +  +E       A++D+  +  ++    E +D +Q+      +SV+ AM+ 
Sbjct: 599 FQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLN---EAWDFIQKMPIEPAISVFGAMLG 655

Query: 116 GVAIH 120
              IH
Sbjct: 656 ACRIH 660


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/413 (43%), Positives = 267/413 (64%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +KDV++W +MI  + +    D A + F +M  + V P++ T  S++  CA  GAL+  
Sbjct: 293 MKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMG 352

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W H  I ++ +E++ IL  ALIDMY+KCG I  A+ +F      D+  WN M++G  +H
Sbjct: 353 KWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMH 412

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +FT+ME   V P+ ITF+G L ACSH GLV EG+  F+ M   + + P++EH
Sbjct: 413 GYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEH 472

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDLLGRAG ++EAY +I SM + P++ +W A+L+AC+  K   +GE+A   ++ + 
Sbjct: 473 YGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAARELLALE 532

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G  VL+SN+Y    RW+    +R+ +K  G++K  G S +E+ G++H FK GD +H
Sbjct: 533 PQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGLVHDFKMGDTAH 592

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + I ++L  + ++ K  G+LP T +VL ++ EEEKE  L +HSEKLA+A+G++ T+P
Sbjct: 593 PLIEKISEMLAEMSKKLKEAGYLPDTSVVLHNIDEEEKETALNYHSEKLAMAFGLISTAP 652

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IR+ KNLRIC DCH+  K++S++ +RVIIVRDR RFH F  G CSCG YW
Sbjct: 653 GTPIRVVKNLRICDDCHTVTKLLSKIYKRVIIVRDRNRFHHFREGSCSCGGYW 705



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 112/216 (51%), Gaps = 2/216 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           + +VSW +MI G++R    +E  R F  M+   V P+  T  S+I  C  +GA+     +
Sbjct: 195 RSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRL 254

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  I+     ++  L+ AL+DMY KCG+I+ A+ +FD+++  DV  W AMIS  A     
Sbjct: 255 HAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCI 314

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  +F +M    V P+ +T + LL+ C+  G ++ G K+F     +  ++  +    A
Sbjct: 315 DYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMG-KWFHAYIDKQGVEVDVILKTA 373

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++D+  + G I  A  L  S  ++ D+  W  +++ 
Sbjct: 374 LIDMYAKCGDISGAQRLF-SEAIDRDICTWNVMMAG 408



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 26/218 (11%)

Query: 25  ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84
           AL  +  M    +E D F   SV+  C+++        +H   ++  +  +  +  AL+ 
Sbjct: 93  ALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQ 152

Query: 85  MYSKCGKIQMAKEVFDTVQRNDVSVWN----------------------AMISGVAIHGL 122
           MYS+CG +  A+ +FD +   DV  W+                      AMI+G      
Sbjct: 153 MYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCND 212

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHY 181
             +   +F +M   NV P+ IT L L+ +C   G V+ G++   + +R+ + +   L   
Sbjct: 213 LEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALA-- 270

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            A+VD+ G+ G I  A  +  SM    DV+ W A++SA
Sbjct: 271 TALVDMYGKCGEIRSARAIFDSMK-NKDVMTWTAMISA 307


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/414 (45%), Positives = 266/414 (64%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD + WN+MI G+ ++ R +EALR FR ML S V+PD+      +   A+LG     
Sbjct: 222 MPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESG 281

Query: 61  YWVHNLIIE-KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
            W+H+ +   ++++LN  +  ALIDMY KCG ++ A  VF+++   D+ VWNAMI+G A+
Sbjct: 282 RWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAM 341

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG +  A  +F+++    + P  ITF+GLL ACSH GLV+EG ++F  M   Y+I P++E
Sbjct: 342 HGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIE 401

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HYG MVDLLGRAG IEEA+ L+ SMT+ PD V+W +LL+ACR  K + LG+     +V  
Sbjct: 402 HYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAG 461

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G Y+LLSN+Y  +  W+    VR +MK  G++K  G S +E+   +++F AGD S
Sbjct: 462 GLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMS 521

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP    I  +L  +    K +G +P TELVL D+ E  KE  L  HSEKLA+A+G++ T+
Sbjct: 522 HPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGLISTA 581

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PG  I+I KNLR C DCH+ +K+IS++  R I+ RDR RFH F  G C+CGDYW
Sbjct: 582 PGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 635



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 104/246 (42%), Gaps = 29/246 (11%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGC--ARLGALNH 59
           PD   V + S I           AL    EML   + P   T +S +  C    LG   H
Sbjct: 94  PDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACHGLALGRALH 153

Query: 60  AY----------WVHNLII----------------EKKIELNFILSAALIDMYSKCGKIQ 93
           AY          +V   ++                ++  + + +   A++  Y+K G + 
Sbjct: 154 AYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALD 213

Query: 94  MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
            A+E+FD +   D   WNAMI G   HG   +A  +F  M    V PD +  +  L+A +
Sbjct: 214 DARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVA 273

Query: 154 HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVW 213
             G  E GR    ++++   +Q       A++D+  + G +E+A  +  S+  + D+VVW
Sbjct: 274 QLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIG-DKDIVVW 332

Query: 214 RALLSA 219
            A+++ 
Sbjct: 333 NAMING 338


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/414 (45%), Positives = 266/414 (64%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD + WN+MI G+ ++ R +EALR FR ML S V+PD+      +   A+LG     
Sbjct: 221 MPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESG 280

Query: 61  YWVHNLIIE-KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
            W+H+ +   ++++LN  +  ALIDMY KCG ++ A  VF+++   D+ VWNAMI+G A+
Sbjct: 281 RWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAM 340

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG +  A  +F+++    + P  ITF+GLL ACSH GLV+EG ++F  M   Y+I P++E
Sbjct: 341 HGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIE 400

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HYG MVDLLGRAG IEEA+ L+ SMT+ PD V+W +LL+ACR  K + LG+     +V  
Sbjct: 401 HYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAG 460

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G Y+LLSN+Y  +  W+    VR +MK  G++K  G S +E+   +++F AGD S
Sbjct: 461 GLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMS 520

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP    I  +L  +    K +G +P TELVL D+ E  KE  L  HSEKLA+A+G++ T+
Sbjct: 521 HPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGLISTA 580

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PG  I+I KNLR C DCH+ +K+IS++  R I+ RDR RFH F  G C+CGDYW
Sbjct: 581 PGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 634



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 104/246 (42%), Gaps = 29/246 (11%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGC--ARLGALNH 59
           PD   V + S I           AL    EML   + P   T +S +  C    LG   H
Sbjct: 93  PDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACHGLALGRALH 152

Query: 60  AY----------WVHNLII----------------EKKIELNFILSAALIDMYSKCGKIQ 93
           AY          +V   ++                ++  + + +   A++  Y+K G + 
Sbjct: 153 AYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALD 212

Query: 94  MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
            A+E+FD +   D   WNAMI G   HG   +A  +F  M    V PD +  +  L+A +
Sbjct: 213 DARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVA 272

Query: 154 HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVW 213
             G  E GR    ++++   +Q       A++D+  + G +E+A  +  S+  + D+VVW
Sbjct: 273 QLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIG-DKDIVVW 331

Query: 214 RALLSA 219
            A+++ 
Sbjct: 332 NAMING 337


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 177/413 (42%), Positives = 270/413 (65%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D VSW +MI G+++  RF E L  FREM ++ ++PD+FT  S++  CA LGAL   
Sbjct: 312 MPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELG 371

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+   I + +I+++  +  ALIDMY  CG ++ A  +F+ +   D   W A+I G+AI+
Sbjct: 372 EWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAIN 431

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F++M   ++ PD +T +G+L AC+H G+V++G+K+F  M +++ I+P + H
Sbjct: 432 GYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAH 491

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDLLGRAGH++EA+ +I +M ++P+ +VW +LL ACR  +  E+ E+A   I  L 
Sbjct: 492 YGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELE 551

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              G  YVLL N+Y    RW+    VR++M  +G++K+ G S +E+ G +H+F AGD+ H
Sbjct: 552 PENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVH 611

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+++ I   L  +    K  G+ P T  V +D+ EEEKE  +Y HSEKLA+A+G++ + P
Sbjct: 612 PQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHSEKLAIAFGLISSGP 671

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KNLR+C DCH   K++S++  R +IVRDR RFH F  G CSC DYW
Sbjct: 672 GVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHGSCSCKDYW 724



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 119/247 (48%), Gaps = 39/247 (15%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           DVV+WN MI G+ R+ +FDE+++ F EM   +V P   T  SV+  C++L  LN    VH
Sbjct: 184 DVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVH 243

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             + + KIE   +L  ALIDMY+ CG +  A  +FD ++  DV  W A+++G    G   
Sbjct: 244 RYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVG 303

Query: 125 DAS-------------------------------AIFTKMEMFNVLPDSITFLGLLTACS 153
            A                                ++F +M+  N+ PD  T + +LTAC+
Sbjct: 304 LARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACA 363

Query: 154 HCGLVEEG---RKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
           H G +E G   + Y D    +  I+       A++D+    G++E+A  +  +M    D 
Sbjct: 364 HLGALELGEWIKAYID----KNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHR-DK 418

Query: 211 VVWRALL 217
           + W A++
Sbjct: 419 ISWTAVI 425



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 116/229 (50%), Gaps = 2/229 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP  +   WN+MI G+ R    + A+  + EML   V PD++T+  ++    R  A+   
Sbjct: 79  MPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCG 138

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ I++     N  +  ALI +YS  G++ +A+ VFD   + DV  WN MISG    
Sbjct: 139 RELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRS 198

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               ++  +F +ME   VLP SIT + +L+ACS    +  G++   +++    I+P    
Sbjct: 199 KQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKD-LKIEPVRVL 257

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG 229
             A++D+    G ++ A G+  +M    DV+ W A+++      ++ L 
Sbjct: 258 ENALIDMYAACGDMDTALGIFDNMKSR-DVISWTAIVTGFTNLGQVGLA 305



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 7/184 (3%)

Query: 46  SVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSK--CGKIQMAKEVFDTVQ 103
           S+I  C  +  L     +H+  I   +  N I+ A +I    K   G ++ A+ VFDT+ 
Sbjct: 24  SLIKTCKSMAQLKQ---IHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMP 80

Query: 104 RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
             +  VWN MI G +  G    A +++ +M    V+PD  T+  LL   +    V+ GR+
Sbjct: 81  GPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRE 140

Query: 164 YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTF 223
             DH+  +      +    A++ L   +G +  A G+    + + DVV W  ++S     
Sbjct: 141 LHDHI-VKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDR-SSKGDVVTWNVMISGYNRS 198

Query: 224 KRLE 227
           K+ +
Sbjct: 199 KQFD 202


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/417 (46%), Positives = 272/417 (65%), Gaps = 8/417 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++DVVSW ++I G+V+   F EAL  F EML +   P++FT AS +  CA L AL+  
Sbjct: 209 MSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQG 268

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVW--NAMISGVA 118
            W+H  I + +I++N  L A+L+DMY+KCG+I  A +VF       + VW  NAMI G A
Sbjct: 269 RWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYA 328

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG + +A  +F +M++  V P+ +TF+ LL ACSH  LVEEGR YF  M S Y I+P++
Sbjct: 329 MHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEI 388

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           EHYG MVDLLGR+G ++EA   + +M M PD  +W ALL ACR  K +E G+  I  I +
Sbjct: 389 EHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQ-RIGKIIK 447

Query: 239 LMGGD----YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294
            +  D    +VLL+N+Y    +WD A+ VR+ ++  G +K+ G S +EL GV HQF  GD
Sbjct: 448 ELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGD 507

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDV-SEEEKEGNLYHHSEKLALAYGIL 353
           RSHP+ + +   L  +  + K+ G++P    VL+D+  EE+KE  L  HSEKLA+A+G++
Sbjct: 508 RSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLI 567

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T PGT IRI KNLR+C DCH   K IS++ +R IIVRDRIR+H F+ G CSC DYW
Sbjct: 568 NTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 624



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 112/299 (37%), Gaps = 72/299 (24%)

Query: 1   MPDKDVVSWNSMIGGF-VRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCAR-LGAL 57
           +P  DV  +N+MI    V       ++R F  M+  S   P+++TF  V   C   LG L
Sbjct: 75  IPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVL 134

Query: 58  -NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
                 VH + I   +E N  ++ A+I MY+  G +  A+ VFD     D+  WN MI G
Sbjct: 135 EGEQIRVHAIKI--GLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGG 192

Query: 117 VAIHGLAADASAIFTKMEMFNVL-------------------------------PDSITF 145
               G    A  +F +M   +V+                               P+  T 
Sbjct: 193 YVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTL 252

Query: 146 LGLLTACSHCGLVEEGR---KYFDH-----------------------------MRSRYS 173
              L AC++   +++GR    Y D                                  Y 
Sbjct: 253 ASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYG 312

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELG 229
           ++ ++  + AM+      G  +EA  L   M +E   P+ V + ALL+AC   K +E G
Sbjct: 313 LKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEG 371



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 7/164 (4%)

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
            HA+ +   +I   I  N +L   +    S  G +  A ++FD + + DV ++N MI   
Sbjct: 34  THAHLITTGLILHPITANKLLKVLIA---SSFGSLSYAHQLFDQIPKPDVFIYNTMIKAH 90

Query: 118 AIHGLAADASA-IFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           A+   ++  S  IF  M  +   LP+  TF+ +  AC +   V EG +   H   +  ++
Sbjct: 91  AVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHA-IKIGLE 149

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             L    AM+ +    G ++EA   +   +++ D+  W  ++  
Sbjct: 150 SNLFVTNAMIRMYANWGLVDEAR-RVFDWSLDQDLYSWNIMIGG 192


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/418 (46%), Positives = 270/418 (64%), Gaps = 11/418 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNH 59
           MP +D+ +WN++I  + +N +  EAL  FRE+ L+   +P++ T AS +  CA+LGA++ 
Sbjct: 324 MPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDL 383

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             W+H  I ++ I+LNF ++ +LIDMYSKCG ++ A EVF +V+R DV VW+AMI+G+A+
Sbjct: 384 GGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAM 443

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG    A  +F+KM+   V P+++TF  LL ACSH GLV+EGR +F+ MR  Y + P  +
Sbjct: 444 HGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSK 503

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY  MVD+LGRAG +EEA  LI  M + P   VW ALL ACR +  +EL E+A    SRL
Sbjct: 504 HYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMA---CSRL 560

Query: 240 MGGD------YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
           +  D      YVLLSN+Y    +WD    +R+ MK  G+ K  G S +E+ G+IH+F  G
Sbjct: 561 LETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVG 620

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEE-KEGNLYHHSEKLALAYGI 352
           D SHP +  I   L  ++ R KS G++     +L  V EE  KE  L  HSEKLA+AYG+
Sbjct: 621 DNSHPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHALNLHSEKLAIAYGL 680

Query: 353 LKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           ++  P   IRI KNLR+C DCHS  K+IS+L  R I++RDR RFH F GG CSC DYW
Sbjct: 681 IRMEPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFHHFSGGNCSCMDYW 738



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 123/249 (49%), Gaps = 34/249 (13%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +KD+VSWNSMI GFV+    +EAL+ F+ M      P++ T   V+  CA+   L    W
Sbjct: 194 EKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRW 253

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQ----------------------------- 93
             + I    I++N ILS A++DMY KCG ++                             
Sbjct: 254 ACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGD 313

Query: 94  --MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMF-NVLPDSITFLGLLT 150
              A+ VFD + R D++ WNA+IS    +G   +A AIF ++++  N  P+ +T    L 
Sbjct: 314 YDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLA 373

Query: 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
           AC+  G ++ G     +++ +  I+       +++D+  + GH+E+A  +  S+    DV
Sbjct: 374 ACAQLGAMDLGGWIHVYIK-KQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERR-DV 431

Query: 211 VVWRALLSA 219
            VW A+++ 
Sbjct: 432 FVWSAMIAG 440



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 112/218 (51%), Gaps = 3/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           +P  ++ +WN++I  F  + +  + L  F +ML  S+  P+ +TF  VI     + +L  
Sbjct: 90  IPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLA 149

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H ++++     +  +S +LI  YS  G +  A  VF  +   D+  WN+MISG   
Sbjct: 150 GQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQ 209

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            G   +A  +F +M+M N  P+ +T +G+L+AC+    +E GR   D++  R  I   L 
Sbjct: 210 GGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIE-RNGIDINLI 268

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              AM+D+  + G +E+A  L   M  E D+V W  ++
Sbjct: 269 LSNAMLDMYVKCGSLEDARRLFDKME-EKDIVSWTTMI 305



 Score = 41.6 bits (96), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 13/153 (8%)

Query: 87  SKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM-EMFNVLPDSITF 145
           S    +  A +VFD + R ++  WN +I   A          +F +M       P+S TF
Sbjct: 75  SSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTF 134

Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
             ++ A +    +  G+     M  + S    L    +++      G ++ AY L+ S  
Sbjct: 135 PFVIKAATEVSSLLAGQA-IHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAY-LVFSKI 192

Query: 206 MEPDVVVWRALLS----------ACRTFKRLEL 228
           +E D+V W +++S          A + FKR+++
Sbjct: 193 VEKDIVSWNSMISGFVQGGSPEEALQLFKRMKM 225


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/397 (46%), Positives = 260/397 (65%), Gaps = 7/397 (1%)

Query: 18  RNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFI 77
           R   F EAL  F +M   K+ P KF   SV+  CA LGAL+   W+H       I+L+ +
Sbjct: 231 RKGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGV 290

Query: 78  LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFN 137
           L  +L+DMY+KCG+I +A EVF+ +   +VS WNAMI G+A+HG A DA  +F+KM+   
Sbjct: 291 LGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD--- 347

Query: 138 VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEA 197
           + P+ ITF+G+L AC+H GLV++G   F+ MR  Y ++PQ+EHYG +VDLLGRAG + EA
Sbjct: 348 INPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEA 407

Query: 198 YGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDYVLLSNMYCYL 254
             +++S+  EP   VW ALL ACR    +ELGE     ++ +     G Y LLSN+Y   
Sbjct: 408 EKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKA 467

Query: 255 KRWDTAENVREIMKKKGVRKSQGKSWLELA-GVIHQFKAGDRSHPEAQAIDKILGSLIQR 313
            RW+    VR++MK++G++ + G S ++L  G +H+F  GD SHP+ + I ++L  + +R
Sbjct: 468 GRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKER 527

Query: 314 TKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIRISKNLRICHDC 373
            + EG+ P    VL D+ EEEKE  ++ HSEKLA+ +G++ TSPGT IRI KNLR+C DC
Sbjct: 528 LQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDC 587

Query: 374 HSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           HS  K+IS++  R IIVRDRIR+H F  G CSC D+W
Sbjct: 588 HSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 624



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 104/226 (46%), Gaps = 13/226 (5%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +V  WN MI   + N    +A+  + EM+ +   P+K+T+ +V+  C+  G +     VH
Sbjct: 122 NVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVH 181

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI---HG 121
             +++  +  +  + ++ I MY+  G++  A+ + D             +  V +    G
Sbjct: 182 AHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDK--------GGEVDAVCMPDRKG 233

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              +A  IF +M+   + P       +L+AC++ G +++GR +      R SIQ      
Sbjct: 234 CFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGR-WIHTYAKRNSIQLDGVLG 292

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
            ++VD+  + G I+ A+ +   M+ + +V  W A++       R E
Sbjct: 293 TSLVDMYAKCGRIDLAWEVFEKMSNK-EVSSWNAMIGGLAMHGRAE 337



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 5/123 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +K+V SWN+MIGG   + R ++A+  F +M    + P++ TF  V+  CA  G +   
Sbjct: 315 MSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKG 371

Query: 61  YWVHN-LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDV-SVWNAMISGVA 118
             + N +  E  +E        ++D+  + G +  A++V  ++      +VW A++    
Sbjct: 372 LTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACR 431

Query: 119 IHG 121
            HG
Sbjct: 432 KHG 434



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 102/267 (38%), Gaps = 42/267 (15%)

Query: 56  ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCG-----KIQMAKEVFDTVQRNDVSVW 110
           +L+H    H LI+      +  ++ +L+  Y+          + +  VFD V++ +V +W
Sbjct: 67  SLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLW 126

Query: 111 NAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS 170
           N MI     +     A  ++ +M + +  P+  T+  +L ACS  G+V EG +   H+  
Sbjct: 127 NCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVK 186

Query: 171 R----------------------YSIQPQLEHYGAMVD---LLGRAGHIEEAYGLITSMT 205
                                     +  L+  G  VD   +  R G   EA  +   M 
Sbjct: 187 HGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCMPDRKGCFMEALEIFHQMQ 246

Query: 206 ME---PDVVVWRALLSACRTFKRLELGE----VAIVNISRLMGGDYVLLSNMYCYLKRWD 258
            E   P   V  ++LSAC     L+ G      A  N  +L G     L +MY    R D
Sbjct: 247 KEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRID 306

Query: 259 TAENVREIMKKKGVRKSQGKSWLELAG 285
            A  V E M  K V      SW  + G
Sbjct: 307 LAWEVFEKMSNKEV-----SSWNAMIG 328


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/417 (46%), Positives = 272/417 (65%), Gaps = 8/417 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++DVVSW ++I G+V+   F EAL  F EML +   P++FT AS +  CA L AL+  
Sbjct: 124 MSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQG 183

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVW--NAMISGVA 118
            W+H  I + +I++N  L A+L+DMY+KCG+I  A +VF       + VW  NAMI G A
Sbjct: 184 RWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYA 243

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG + +A  +F +M++  V P+ +TF+ LL ACSH  LVEEGR YF  M S Y I+P++
Sbjct: 244 MHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEI 303

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           EHYG MVDLLGR+G ++EA   + +M M PD  +W ALL ACR  K +E G+  I  I +
Sbjct: 304 EHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQ-RIGKIIK 362

Query: 239 LMGGD----YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294
            +  D    +VLL+N+Y    +WD A+ VR+ ++  G +K+ G S +EL GV HQF  GD
Sbjct: 363 ELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGD 422

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDV-SEEEKEGNLYHHSEKLALAYGIL 353
           RSHP+ + +   L  +  + K+ G++P    VL+D+  EE+KE  L  HSEKLA+A+G++
Sbjct: 423 RSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLI 482

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T PGT IRI KNLR+C DCH   K IS++ +R IIVRDRIR+H F+ G CSC DYW
Sbjct: 483 NTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 539



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 103/274 (37%), Gaps = 71/274 (25%)

Query: 25  ALRFFREMLS-SKVEPDKFTFASVIYGCAR-LGAL-NHAYWVHNLIIEKKIELNFILSAA 81
           ++R F  M+  S   P+++TF  V   C   LG L      VH + I   +E N  ++ A
Sbjct: 15  SMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKI--GLESNLFVTNA 72

Query: 82  LIDMYSK-------------------------------CGKIQMAKEVFDTVQRNDVSVW 110
           +I MY+                                 G+I  AKE+FD +   DV  W
Sbjct: 73  MIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSW 132

Query: 111 NAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---KYFDH 167
             +I+G    G   +A  +F +M      P+  T    L AC++   +++GR    Y D 
Sbjct: 133 TTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDK 192

Query: 168 -----------------------------MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAY 198
                                            Y ++ ++  + AM+      G  +EA 
Sbjct: 193 SEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAI 252

Query: 199 GLITSMTME---PDVVVWRALLSACRTFKRLELG 229
            L   M +E   P+ V + ALL+AC   K +E G
Sbjct: 253 DLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEG 286


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/411 (46%), Positives = 264/411 (64%), Gaps = 4/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           DK++V+W++M+ G+ R    +EAL  FREM +  VEPD+ T  SVI  CA+ GAL+   W
Sbjct: 239 DKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKW 298

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  I  K I ++  LS ALIDMY+KCG I+ A+ VFD +   D   W+AMI G AIHGL
Sbjct: 299 VHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGL 358

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             DA  +F++M    V P+++TF+G+L+AC+H GLVE+GR+Y+  M++   I+P +E+YG
Sbjct: 359 VEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQN-LGIKPSMENYG 417

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL--- 239
            MVDLL R+G +++AY  +  M + P+ V+WR LL AC++  R+++ E A   +  L   
Sbjct: 418 CMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPH 477

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
              +YVLLSN+Y    +WD    +R  MK K V    G+S +E+ G +H+F   D SHPE
Sbjct: 478 NPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPE 537

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
            + I  +L  +  R +  G  P T  VL DV EEEKE  L  HSE+LA+AYG+LKT    
Sbjct: 538 IREIRLVLREMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPH 597

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IR+ KNLR C DCH   K+IS+   R I+VRDR+RFH+F GG CSC D+W
Sbjct: 598 VIRVVKNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 648



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 114/222 (51%), Gaps = 11/222 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           +PD     +NS+I      A    AL  +R ML +    P+ FT A  +  CA + A   
Sbjct: 135 IPDPTAFCYNSLIRALP-AAGSAPALAVYRRMLRAGSPRPNSFTLAFALKACAAVPAPGE 193

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN-DVSVWNAMISGVA 118
              +H   + + +  +  +   L+++Y+KC ++ +A+ VFD +  + ++  W+AM+SG +
Sbjct: 194 GRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYS 253

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---KYFDHMRSRYSIQ 175
             G+  +A  +F +M+   V PD +T + +++AC+  G ++ G+    Y D    R  I 
Sbjct: 254 RVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYID----RKGIT 309

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             LE   A++D+  + G IE A G+  +M +E D   W A++
Sbjct: 310 VDLELSTALIDMYAKCGLIERARGVFDAM-VEKDTKAWSAMI 350



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 8/94 (8%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +KD  +W++MI GF  +   ++AL  F  ML  KV P+  TF  V+  CA  G +   
Sbjct: 338 MVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDG 397

Query: 61  --YW--VHNLIIEKKIELNFILSAALIDMYSKCG 90
             YW  + NL I+  +E N+     ++D+  + G
Sbjct: 398 RRYWSIMQNLGIKPSME-NY---GCMVDLLCRSG 427


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/414 (45%), Positives = 266/414 (64%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KD + WN+MI G+ ++ + +EAL+ FR ML S  EPD+ T   V+   A+LG +   
Sbjct: 211 LPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESG 270

Query: 61  YWVHNLIIEKK-IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
            W+H+ +   + ++LN  ++ AL+DMY KCG ++ A  VF  +   D+ VWNAMI+G A+
Sbjct: 271 KWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAM 330

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG +  A  +F ++    + P  ITF+GLL ACSH GLVEEGR +F  M   Y I P++E
Sbjct: 331 HGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIE 390

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE-VA--IVNI 236
           HYG MVDLLGRAG IEEA+ L+ S+T+ PD V+W +LL+ACR  K + LG+ +A  +V  
Sbjct: 391 HYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRIADFLVAN 450

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G Y+LLSN+Y  + +W+    VR +MK  G++K  G S +E+   +++F AGD S
Sbjct: 451 GLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYEFVAGDMS 510

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP    I  +L  +    K  G +P TELVL D+ E  KE  L  HSEKLA+A+G++ + 
Sbjct: 511 HPCTDEIYAMLDKMNALVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLAVAFGLISSR 570

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PG+ I+I KNLR C DCH+ +K+IS++  R I+ RDR RFH F  G C+CGDYW
Sbjct: 571 PGSTIKIVKNLRACSDCHAVLKLISKITSRKIVFRDRNRFHHFVDGSCTCGDYW 624



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 105/244 (43%), Gaps = 29/244 (11%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGC--ARLGALNHA 60
           D   + + S I            L    +MLS  + P   T ++ +  C    LG   HA
Sbjct: 84  DPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPACRGLSLGRALHA 143

Query: 61  Y----------WVHNLII----------------EKKIELNFILSAALIDMYSKCGKIQM 94
           Y          +V   ++                ++  + + +   A++  Y+  G +  
Sbjct: 144 YAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDD 203

Query: 95  AKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
           A+ +FD + R D   WNAMI G   HG   +A  +F +M   +  PD +T + +L+A + 
Sbjct: 204 ARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQ 263

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
            G VE G+    ++++   +Q  +    A+VD+  + G +E+A  +   +    D+VVW 
Sbjct: 264 LGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIG-NKDIVVWN 322

Query: 215 ALLS 218
           A+++
Sbjct: 323 AMIN 326


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/415 (46%), Positives = 263/415 (63%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D+DVVSW SMI GFV + R  EA+R F EM+   VEP++ T  SV+  CA  GA+   
Sbjct: 157 MRDRDVVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMG 216

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V  +I E+KI L   +  ALIDMY+KCG I  A++VFD +   DV  W AMISG+A H
Sbjct: 217 RRVQGVIEERKIGLEANVRTALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANH 276

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  +F +ME F + PD  T   +L+AC + G   EG  YF+ M  +Y I+P ++H
Sbjct: 277 GLCEEAVTLFDQMESFGLRPDERTMTAVLSACRNAGWFSEGFAYFNSMWCKYGIKPTIQH 336

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV-----AIVN 235
           YG MVDLL R GH++EA   I  M +EPDVV+WR L+ A +    ++  E       ++ 
Sbjct: 337 YGCMVDLLARTGHLDEAEEFIRKMPIEPDVVLWRTLIWASKVHGDIDRSEQLMKDRGLLK 396

Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           +     G YVLL N+Y    +W     +RE+M +KG+ K  G S +E+ G++H+F AGD 
Sbjct: 397 MDSDDCGSYVLLGNVYASAGKWHDKAKMRELMNQKGLSKPPGCSRIEVDGLVHEFAAGDS 456

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
            H EA+ I   L  + +R K+EG+ P    VL+++  +EK   L HHSEKLA+A+G++KT
Sbjct: 457 GHIEAEKIYAKLDEVEERLKAEGYHPKLSEVLLEIDNKEKAFQLRHHSEKLAVAFGLIKT 516

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           SPGTEIRI KNLR C DCHS +K+IS++ ++ IIVRDRIRFH F  G CSC DYW
Sbjct: 517 SPGTEIRIVKNLRSCEDCHSVLKLISKIYQQDIIVRDRIRFHHFINGDCSCKDYW 571



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 101/212 (47%), Gaps = 4/212 (1%)

Query: 10  NSMIGGFVRNARFDEALRFFREML--SSKVEPDKFTFASVIYGCARLGALNHAYWVHNLI 67
           N+MI  + +     +AL  F  ML   +   PDKFT+  ++  CARL        +H LI
Sbjct: 63  NTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLHGLI 122

Query: 68  IEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADAS 127
            +  +E +  +S  LI MYS CGK   A +VF  ++  DV  W +MI G      A +A 
Sbjct: 123 YKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEAI 182

Query: 128 AIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDL 187
            +F +M    V P+  T + +L AC+  G V  GR+    +  R  I  +     A++D+
Sbjct: 183 RLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEER-KIGLEANVRTALIDM 241

Query: 188 LGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             + G I  A  +   + +  DV  W A++S 
Sbjct: 242 YAKCGSIGSARKVFDGI-VNKDVFAWTAMISG 272


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/411 (46%), Positives = 264/411 (64%), Gaps = 4/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           DK++V+W++M+ G+ R    +EAL  FREM +  VEPD+ T  SVI  CA+ GAL+   W
Sbjct: 190 DKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKW 249

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  I  K I ++  LS ALIDMY+KCG I+ A+ VFD +   D   W+AMI G AIHGL
Sbjct: 250 VHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGL 309

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             DA  +F++M    V P+++TF+G+L+AC+H GLVE+GR+Y+  M++   I+P +E+YG
Sbjct: 310 VEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQN-LGIKPSMENYG 368

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL--- 239
            MVDLL R+G +++AY  +  M + P+ V+WR LL AC++  R+++ E A   +  L   
Sbjct: 369 CMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPH 428

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
              +YVLLSN+Y    +WD    +R  MK K V    G+S +E+ G +H+F   D SHPE
Sbjct: 429 NPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPE 488

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
            + I  +L  +  R +  G  P T  VL DV EEEKE  L  HSE+LA+AYG+LKT    
Sbjct: 489 IREIRLVLREMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPH 548

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IR+ KNLR C DCH   K+IS+   R I+VRDR+RFH+F GG CSC D+W
Sbjct: 549 VIRVVKNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 599



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 113/219 (51%), Gaps = 5/219 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           +PD     +NS+I      A    AL  +R ML +    P+ FT A  +  CA + A   
Sbjct: 86  IPDPTAFCYNSLIRALP-AAGSAPALAVYRRMLRAGSPRPNSFTLAFALKACAAVPAPGE 144

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN-DVSVWNAMISGVA 118
              +H   + + +  +  +   L+++Y+KC ++ +A+ VFD +  + ++  W+AM+SG +
Sbjct: 145 GRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYS 204

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
             G+  +A  +F +M+   V PD +T + +++AC+  G ++ G K+      R  I   L
Sbjct: 205 RVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLG-KWVHAYIDRKGITVDL 263

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           E   A++D+  + G IE A G+  +M +E D   W A++
Sbjct: 264 ELSTALIDMYAKCGLIERARGVFDAM-VEKDTKAWSAMI 301



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 8/94 (8%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +KD  +W++MI GF  +   ++AL  F  ML  KV P+  TF  V+  CA  G +   
Sbjct: 289 MVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDG 348

Query: 61  --YW--VHNLIIEKKIELNFILSAALIDMYSKCG 90
             YW  + NL I+  +E N+     ++D+  + G
Sbjct: 349 RRYWSIMQNLGIKPSME-NY---GCMVDLLCRSG 378


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/415 (44%), Positives = 270/415 (65%), Gaps = 5/415 (1%)

Query: 1   MPDKD-VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           MP+K+  +SW +MI G+V+     EAL+ F EM +S V PD  + AS +  C++LGAL  
Sbjct: 202 MPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQ 261

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             W+H+   + +  ++ +L   LIDMY+KCG+++ A  VF  ++   V VW A+ISG A 
Sbjct: 262 GKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAY 321

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HGL  +A + F +M+   V P++ITF  +LTACS+ GLVEEG+  F+ +   Y+++P +E
Sbjct: 322 HGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIE 381

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV---AIVNI 236
           HYG MVDLLGRAG + EA   I  M ++P+ V+W +LL AC+  K +ELGE     ++ +
Sbjct: 382 HYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGEILIEM 441

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
               GG YV ++N++   K+WD A   R +M+++GV K  G S + L G  H+F AGDRS
Sbjct: 442 DSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISLEGTTHEFLAGDRS 501

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMD-VSEEEKEGNLYHHSEKLALAYGILKT 355
           H E Q I      + ++ +  G++P  E +L+D V +EEKE  ++ HSEKLA+ YG++KT
Sbjct: 502 HAEIQEIRTKWRFVRRKLEENGYVPELEDMLLDLVDDEEKEAIVHQHSEKLAITYGLMKT 561

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            PGT IRI KNLR+C DCH  + +IS++ +R I++RDR RFH F+ G CSCGDYW
Sbjct: 562 KPGTTIRIMKNLRVCKDCHKVMNLISKIYKRDIVMRDRTRFHHFKDGKCSCGDYW 616



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 40/250 (16%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D   WN MI G   + + D +L  +  ML      + +TF  ++  C+ L A      +H
Sbjct: 74  DTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIH 133

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA------------ 112
             I +     +     +LI+ Y+  G  + A  +FD +Q  D   WN+            
Sbjct: 134 AHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMD 193

Query: 113 --------------------MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC 152
                               MISG    G+  +A  +F +M+  NV PD+++    L+AC
Sbjct: 194 MALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSAC 253

Query: 153 SHCGLVEEGR---KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
           S  G +E+G+    Y +  R+R  I   L     ++D+  + G +EEA G+  +M  +  
Sbjct: 254 SQLGALEQGKWIHSYANKTRTR--IDSVL--CCVLIDMYAKCGEMEEALGVFKNMKTK-S 308

Query: 210 VVVWRALLSA 219
           V VW AL+S 
Sbjct: 309 VQVWTALISG 318


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/413 (44%), Positives = 262/413 (63%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K++V+W+ MI G+ +N+ FD+A+  +  + S  V  ++    SVI  CA LGAL   
Sbjct: 205 MPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELG 264

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H+ I+  K+ +N IL  AL+DMY++CG I  A  VFD +   D   W  +I+G A+H
Sbjct: 265 ERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMH 324

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A  A   F++ME   + P  ITF  +L+ACSH GLVE G + F+ M+  Y I+P+LEH
Sbjct: 325 GYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEH 384

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDLLGRAG + EA   +  M M+P+  +W ALL ACR  K  E+ E A   ++ + 
Sbjct: 385 YGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELK 444

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    +W+  EN+R++MK++GV K  G +  E+ G +H+F  GD++H
Sbjct: 445 PEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIGDKTH 504

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE Q I+++   ++ + +  G+    +  L D+ EEEKE N++ HSEKLA+AY I++T  
Sbjct: 505 PEIQQIERMWEEILGKIRLAGYTGNNDDALFDIDEEEKESNIHRHSEKLAIAYAIMRTKG 564

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IRI KNLR+C DCH+  K+IS++  R +IVRDR RFH F+GG CSC DYW
Sbjct: 565 HDPIRIVKNLRVCEDCHTATKLISKVYERELIVRDRNRFHHFKGGACSCMDYW 617



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/251 (20%), Positives = 110/251 (43%), Gaps = 35/251 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + + ++  +NS I GF  +   D++  F+ +   + + PD  T+  ++  C + G+L+  
Sbjct: 73  IQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMG 132

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYS-------------------------------KC 89
              H  II    + +  +  +L+ MYS                               K 
Sbjct: 133 IQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKS 192

Query: 90  GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
           G +  A+++FD +   ++  W+ MISG A +     A  ++  ++   V  +    + ++
Sbjct: 193 GDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVI 252

Query: 150 TACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
            +C+H G +E G +  D+ +R++ ++   L    A+VD+  R G I++A  +   +    
Sbjct: 253 ASCAHLGALELGERAHDYILRNKMTVNLILG--TALVDMYARCGSIDKAIWVFDQLPGR- 309

Query: 209 DVVVWRALLSA 219
           D + W  L++ 
Sbjct: 310 DALSWTTLIAG 320



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 30/164 (18%), Positives = 74/164 (45%), Gaps = 2/164 (1%)

Query: 56  ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
            L+H   +H  +I      +   ++ LI +      +  A +VF  +Q  ++ ++N+ I 
Sbjct: 27  TLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIR 86

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           G +       +   + + +   ++PD++T+  L+ AC+  G ++ G +    +  R+   
Sbjct: 87  GFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQI-IRHGFD 145

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +    ++V +    G I+ A  +   ++   DVV W ++++ 
Sbjct: 146 SDVYVQNSLVTMYSTLGDIKSASYVFRRISC-LDVVSWTSMVAG 188


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/414 (44%), Positives = 260/414 (62%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++ VSW++M+ G+V+     EALR F  M +  V PD      V+  CA+ GAL   
Sbjct: 169 MPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQG 228

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH  +    I++N     AL+DMYSKCG++Q+A +VF+ +Q  +V  W  MI G+A+H
Sbjct: 229 KWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMH 288

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  ++A  +F +ME   + PD I F+G+L AC+H GLV++GR+ FD M  +Y I+P++EH
Sbjct: 289 GRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEH 348

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI---VNIS 237
           YG MVDLL R G + EA  +I  M MEPD ++W AL++ CR  K +E  E      + + 
Sbjct: 349 YGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFHKNVEFAEYVAKHWILLE 408

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    R  +A  +R +M++KGV K+ G S +E+ GVIHQF  GD SH
Sbjct: 409 PDKSGAYVLLSNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEVNGVIHQFIVGDLSH 468

Query: 298 PEAQAIDKILGSLIQRTK-SEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           P  + I      +  R +  EG++P  + VL+D+ EEEKEG L  HSEKLA+A+ ++  S
Sbjct: 469 PRIKDILSKWYEIDTRIRLEEGYIPDMKEVLLDIEEEEKEGALSRHSEKLAIAFALISIS 528

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
               IRI KNLR+CHDCH   K+IS++  R I+VRDR RFH F+ G CSC DYW
Sbjct: 529 DNMPIRIFKNLRVCHDCHHVTKLISKVYGREIVVRDRTRFHLFKEGTCSCKDYW 582



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 109/246 (44%), Gaps = 42/246 (17%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASV---------IYGCARLGALNHA 60
           +++I    R+AR   AL  +  +L + + P   T  S+         + G A L    H 
Sbjct: 41  DALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMALSPAVPGAAVLALTVHT 100

Query: 61  Y----------WVHNLIIEKKIELNFILSAA-------------------LIDMYSKCGK 91
           +           V N +I  ++   F+ S A                   LI  Y++ G+
Sbjct: 101 HAVKLGLDRFVLVSNALI--RVHAGFLGSLADGLLLLRTAAAVDASTFNTLITAYARAGR 158

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           +  A+ +FD +   +   W+AM++G    G   +A  IF +M+  +V PD    +G+L A
Sbjct: 159 LADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAA 218

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           C+  G +E+G+    ++++ + I+  L    A+VD+  + G ++ A  +   M  + +V+
Sbjct: 219 CAQHGALEQGKWVHGYLKA-HGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYK-NVL 276

Query: 212 VWRALL 217
            W  ++
Sbjct: 277 AWTTMI 282


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/405 (47%), Positives = 258/405 (63%), Gaps = 3/405 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KDVVSW+SMI G+ +N  FDE L  F+EM  S  +PD+ T  SVI  CARL AL   
Sbjct: 468 MPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQG 527

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH  I    + +N IL   LIDMY KCG ++ A EVF  +    +S WNA+I G+A++
Sbjct: 528 KWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMN 587

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL   +  +F+ M+  +V P+ ITF+G+L AC H GLV+EG+ +F  M   + IQP ++H
Sbjct: 588 GLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKH 647

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDLLGRAG ++EA  L+  M M PDV  W ALL AC+     E+G      ++ + 
Sbjct: 648 YGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQ 707

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G +VLLSN+Y    +WD    +R +M K  V K  G S +E  GVIH+F AGD++H
Sbjct: 708 PDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTH 767

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+  AI+ +L  +  + K EG+ P    VL+DV EEEKE  L+ HSEKLA+A+G++  SP
Sbjct: 768 PDMDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISP 827

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGG 402
            T IRI KNLRIC+DCH+  K+IS+   R I+VRDR RFH FE G
Sbjct: 828 PTPIRIMKNLRICNDCHTAAKLISKAFCRKIVVRDRHRFHHFEQG 872



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 118/248 (47%), Gaps = 33/248 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +KD+V+W+++I  F +N  ++EA+R F  M    V  D+    S +  CA L  +N  
Sbjct: 336 MLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMG 395

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQM-------------------------- 94
             +H+L ++   E    L  ALI MYSKCG I +                          
Sbjct: 396 KLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKC 455

Query: 95  -----AKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
                AK +FD++   DV  W++MISG A + L  +  A+F +M+M    PD  T + ++
Sbjct: 456 NLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVI 515

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
           +AC+    +E+G+    +++ R  +   +     ++D+  + G +E A  +   M +E  
Sbjct: 516 SACARLAALEQGKWVHAYIK-RNGLTINVILGTTLIDMYMKCGCVETALEVFYGM-IEKG 573

Query: 210 VVVWRALL 217
           +  W AL+
Sbjct: 574 ISTWNALI 581



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 107/236 (45%), Gaps = 18/236 (7%)

Query: 25  ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84
           A   ++ MLS+ +  D +T+  +I  C+   +   A  VHN +++   + +  +   LI+
Sbjct: 197 AFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLIN 256

Query: 85  MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDS-- 142
            +S C  +  A  VF+     D   WN++++G    G   +A  I+ +M   +++  +  
Sbjct: 257 CFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSM 316

Query: 143 ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
           I   G+       GLV E  K FD M     ++  +  + A++    +    EEA     
Sbjct: 317 IVLFGMR------GLVVEACKLFDEM-----LEKDMVTWSALIACFQQNEMYEEAIRTFV 365

Query: 203 SM---TMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD-YVLLSNMYCYL 254
            M    +  D VV  + LSAC     + +G++ I ++S  +G + Y+ L N   Y+
Sbjct: 366 GMHKIGVMVDEVVAVSALSACANLLVVNMGKL-IHSLSLKIGTESYINLQNALIYM 420


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/413 (45%), Positives = 261/413 (63%), Gaps = 3/413 (0%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            M  +D+VSW SMI G+  N    E L FF  M SS V P++ +  SV+  C  LGAL   
Sbjct: 879  MAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKG 938

Query: 61   YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             W H+ +I+   E + +++ A++DMYSKCG + +A+ +FD     D+  W+AMI+   IH
Sbjct: 939  EWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIH 998

Query: 121  GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            G    A  +F +M    V P  +TF  +L+ACSH GL+EEG+ YF  M   + I  +L +
Sbjct: 999  GHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSN 1058

Query: 181  YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
            Y  MVDLLGRAG + EA  LI +M +EPD  +W +LL ACR    L+L E     + ++ 
Sbjct: 1059 YACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLD 1118

Query: 238  RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             +  G +VLLSN+Y    RW+  E VR++M ++G  K QG S +E    +H+F  GDRSH
Sbjct: 1119 PVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSH 1178

Query: 298  PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            P+ + +   L  L    K  G++P T+ VL D+ EE KE  L +HSE+LA+A+G++ TSP
Sbjct: 1179 PQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAIAFGLINTSP 1238

Query: 358  GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            GT +RI+KNLRIC DCH+ IK+IS+++ RVI+VRD  RFHRFE G+CSCGDYW
Sbjct: 1239 GTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 1291



 Score =  247 bits (630), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 129/364 (35%), Positives = 205/364 (56%), Gaps = 7/364 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KDVVSW +++ G+ +N    +++  FR MLS  ++PD      ++   + LG    A
Sbjct: 368 LPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQA 427

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  ++      N  + A+LI++YSKCG +  A ++F  +   DV +W++MI+   IH
Sbjct: 428 LCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIH 487

Query: 121 GLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           G   +A  IF +M +   V P+++TFL +L+ACSH GLVEEG K FD M   Y ++P  E
Sbjct: 488 GRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSE 547

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           H+G MVDLLGR G + +A  +I  M +     VW ALL ACR    +E+GE A  N+  L
Sbjct: 548 HFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWL 607

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G Y+LLSN+Y    +WD    +R  +K++G++K  G+S +E+ G +H F A DR 
Sbjct: 608 DPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRF 667

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP++Q I ++L  L  +   E ++P  + +L D     +    +   +     Y  + ++
Sbjct: 668 HPDSQKIYELLRKLEAQMGKEVYIPDLDFLLHDTGAVLQ---FWQRIKATESKYKTIGSA 724

Query: 357 PGTE 360
           PGT+
Sbjct: 725 PGTD 728



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 116/219 (52%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KDV+SW++MI  +  N   +EAL  F EM+  + EP+  T  S +  CA    L   
Sbjct: 267 MPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEG 326

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H + + K  EL+F +S ALIDMY KC     A ++F  + + DV  W A++SG A +
Sbjct: 327 KKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQN 386

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G+A  +  +F  M    + PD++  + +L A S  G+ ++      ++  R      +  
Sbjct: 387 GMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYV-VRSGFNSNVFV 445

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             ++++L  + G + +A  L   M +  DVV+W ++++A
Sbjct: 446 GASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSSMIAA 483



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 10/223 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+     WN MI GF  + RF  +L  + +M+   ++PDKF F   +  CA L  L   
Sbjct: 778 IPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRG 837

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  ++      +  + AAL+DMY+KCG I+ A+ VFD +   D+  W +MISG A +
Sbjct: 838 KVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHN 897

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  ++    F  M    V+P+ ++ L +L AC + G + +G  +       Y IQ   E 
Sbjct: 898 GYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWF-----HSYVIQTGFEF 952

Query: 181 ----YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                 A++D+  + G ++ A  L    T   D+V W A++++
Sbjct: 953 DILVATAIMDMYSKCGSLDLARCLFDE-TAGKDLVCWSAMIAS 994



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 113/220 (51%), Gaps = 5/220 (2%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE-PDKFTFASVIYGCARLGALNHA 60
           P  +V  WNS +  + R  +++E LR F  M+ +  E PD FT    +  CA L  L   
Sbjct: 63  PHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122

Query: 61  YWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             +H    +  +I  +  + +AL+++YSKCG++  A +VF+  QR D  +W +M++G   
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQ 182

Query: 120 HGLAADASAIFTKMEMFN-VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +    +A A+F++M M + V+ D +T + +++AC+    V+ G      +  R      L
Sbjct: 183 NNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAG-SCVHGLVIRREFDGDL 241

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
               ++++L  + G  + A  L + M  E DV+ W  +++
Sbjct: 242 PLVNSLLNLYAKTGCEKIAANLFSKMP-EKDVISWSTMIA 280



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 108/216 (50%), Gaps = 3/216 (1%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           D V W SM+ G+ +N   +EAL  F +M +   V  D  T  SV+  CA+L  +     V
Sbjct: 169 DTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCV 228

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H L+I ++ + +  L  +L+++Y+K G  ++A  +F  +   DV  W+ MI+  A +  A
Sbjct: 229 HGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAA 288

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F +M      P+S+T +  L AC+    +EEG+K    +      +       A
Sbjct: 289 NEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKK-IHKIAVWKGFELDFSVSTA 347

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++D+  +    +EA  L   +  + DVV W ALLS 
Sbjct: 348 LIDMYMKCSCPDEAVDLFQRLP-KKDVVSWVALLSG 382



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 5/186 (2%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+ + +  I  +   +  L  +Y+KC  +Q A++VFD     +V +WN+ +        
Sbjct: 23  LHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQ 82

Query: 123 AADASAIFTKME-MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
             +   +F  M       PD+ T    L AC+   ++E G+      +    I   +   
Sbjct: 83  WEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVG 142

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
            A+V+L  + G + EA  +       PD V+W ++++    +++    E A+   S+++ 
Sbjct: 143 SALVELYSKCGQMGEALKVFEEFQ-RPDTVLWTSMVTG---YQQNNDPEEALALFSQMVM 198

Query: 242 GDYVLL 247
            D V+L
Sbjct: 199 MDCVVL 204



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 2/135 (1%)

Query: 85  MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSIT 144
           MY    +I  A  VF+ +      +WN MI G A  G    +  +++KM    + PD   
Sbjct: 761 MYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFA 820

Query: 145 FLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
           F   L +C+    ++ G+    H+         L    A+VD+  + G IE A  +   M
Sbjct: 821 FPFALKSCAGLSDLQRGKVIHQHLVC-CGCSNDLFVDAALVDMYAKCGDIEAARLVFDKM 879

Query: 205 TMEPDVVVWRALLSA 219
            +  D+V W +++S 
Sbjct: 880 AVR-DLVSWTSMISG 893


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/417 (46%), Positives = 270/417 (64%), Gaps = 10/417 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K VVSWN MI G  +N  F EA+  F +M    V P+  T  SV+   +RLGA+   
Sbjct: 216 MPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELG 275

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
            WVH    + +IE++ +L +ALIDMYSKCG I  A +VF+ ++ + +   W+A+I G+A+
Sbjct: 276 KWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAM 335

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG A DA   F +M+   V P  + ++G+L+ACSH GLVEEGR  + HM +   + P++E
Sbjct: 336 HGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIE 395

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HYG MVDLLGRAG +EEA  LI +M ++PD V+ +ALL AC+    +E+GE  I  I  L
Sbjct: 396 HYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGE-RIAKI--L 452

Query: 240 MG------GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
           MG      G YV LSNM+     W+    VR  MK+  +RK  G SW+EL GVIH+F   
Sbjct: 453 MGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSWIELDGVIHEFLVE 512

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           D SHP A+ I  +L  +  R +S G+ P T  VL+++ E+EK+  L++HSEK+A+A+G++
Sbjct: 513 DDSHPRAEGIHSMLEEMSDRLRSVGYRPNTTQVLLNMDEKEKQSALHYHSEKIAIAFGLI 572

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T P T ++I KNLR+C DCHS IK++S++  R IIVRDR RFH FE G CSC DYW
Sbjct: 573 STRPQTPLQIVKNLRVCEDCHSSIKLVSKIYNRKIIVRDRKRFHHFENGSCSCMDYW 629



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 116/255 (45%), Gaps = 41/255 (16%)

Query: 5   DVVSWNSMIGGFVRNARFD-------EALRFFREMLSSK-VEPDKFTFASVIYGCARLGA 56
           +  SWN++I     +   D       EAL +F  ML+   VEP+KFTF  V+  CA+L  
Sbjct: 79  NCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLAR 138

Query: 57  LNHAYWVHNLII--------------------------------EKKIELNFILSAALID 84
           +     +H  ++                                + ++E N +L   +ID
Sbjct: 139 IEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMID 198

Query: 85  MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSIT 144
            Y + G ++ ++E+FD++    V  WN MISG A +G   +A  +F  M++ +V P+ +T
Sbjct: 199 GYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVT 258

Query: 145 FLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
            + +L A S  G +E G K+      +  I+       A++D+  + G I++A  +   +
Sbjct: 259 LVSVLPAVSRLGAIELG-KWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGI 317

Query: 205 TMEPDVVVWRALLSA 219
             + + + W A++  
Sbjct: 318 RNKKNPITWSAIIGG 332


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/412 (43%), Positives = 274/412 (66%), Gaps = 4/412 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +KDV+SW SM+ G  ++  F EAL  F++M  +K+E D+ T   V+  CA+ GAL+   +
Sbjct: 276 EKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKY 335

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H LI + +I  + +L  AL+DMY+KCG I +A +VF  ++  +V  WNA+I G+A+HG 
Sbjct: 336 IHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGH 395

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             DA ++F +ME   ++PD +TF+ LL ACSH GLV+EG   F  M++++ I+P++EHYG
Sbjct: 396 GEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYG 455

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            +VDLL RA  +++A   I +M ++ + V+W  LL ACR+    +L E     ++ +   
Sbjct: 456 CVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPD 515

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             G YV+LSN+Y  + +WD A  +R+ MK KG+ K+ G SW+EL G+IHQF AGDRSH +
Sbjct: 516 SCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQ 575

Query: 300 AQAIDKILGSLIQRTKSE-GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
            + I  ++  + +R   + G +P T  VL D+ EEEKE +L+ HSEKLA+A G++ T  G
Sbjct: 576 TEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSG 635

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + IRI KNLR+C+DCHS++K+ S++  R I+ RDR RFH F+ G CSC D+W
Sbjct: 636 SPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 687



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 120/215 (55%), Gaps = 3/215 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYW 62
           +DVV+WN MI   +     ++A     EM     + PD+ T  S++  CA+LG L    +
Sbjct: 175 RDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKF 234

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+   E  ++ N  ++ A++DMY KC  I+ A+EVF+ ++  DV  W +M+SG+A  G 
Sbjct: 235 LHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGY 294

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A A+F KM++  +  D IT +G+L+AC+  G +++G KY   +  ++ I   L    
Sbjct: 295 FQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQG-KYIHLLIDKFEINCDLVLET 353

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           A+VD+  + G I+ A  +   M +  +V  W AL+
Sbjct: 354 ALVDMYAKCGSIDLALQVFRRMRVR-NVFTWNALI 387



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 116/248 (46%), Gaps = 13/248 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M + D    N+MI G+ R+    EA+  +  M+   V  D +T+  V+  CARLGA+   
Sbjct: 71  MQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLG 130

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H  +++     +  +  ALI  Y  CG    A +VFD     DV  WN MI+     
Sbjct: 131 RRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNK 190

Query: 121 GLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           GL+  A  +  +M ++ N+ PD +T + L+ AC+  G +E G K+         +   L 
Sbjct: 191 GLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERG-KFLHSYSKELGLDENLR 249

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS----------ACRTFKRLELG 229
              A++D+  +   IE A  +   +  E DV+ W ++LS          A   F++++L 
Sbjct: 250 VNNAILDMYCKCDDIESAQEVFNRIR-EKDVLSWTSMLSGLAKSGYFQEALALFQKMQLN 308

Query: 230 EVAIVNIS 237
           ++ +  I+
Sbjct: 309 KIELDEIT 316



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 109/261 (41%), Gaps = 47/261 (18%)

Query: 64  HNLIIEKKIELNFILSAALIDMY--SKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           H L++   +  N + S+ LI     S  G +  A+++F  +Q  D  + N MI G A   
Sbjct: 31  HALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQ 90

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR------YSIQ 175
              +A +++  M    V  D+ T+  +L AC+  G V+ GR++   +         + I 
Sbjct: 91  NPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVIN 150

Query: 176 PQLEHY------GAMVDLLGRA------------------GHIEEAYGLITSMT----ME 207
             ++ Y      G   D+   +                  G  E+A+ L+  MT    + 
Sbjct: 151 ALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLR 210

Query: 208 PDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSN-----MYCYLKRWDTAEN 262
           PD V   +L+ AC     LE G+  + + S+ +G D  L  N     MYC   + D  E+
Sbjct: 211 PDEVTMVSLVPACAQLGNLERGKF-LHSYSKELGLDENLRVNNAILDMYC---KCDDIES 266

Query: 263 VREIMKKKGVRKSQGKSWLEL 283
            +E+  +  +R+    SW  +
Sbjct: 267 AQEVFNR--IREKDVLSWTSM 285


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/413 (44%), Positives = 267/413 (64%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KD+VSW++MI G+  N    +AL  F +M S  ++PD +T   V+  CA LGAL+  
Sbjct: 276 MPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLG 335

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W  +L+   +   N +L  ALIDMYSKCG +  A E+F  ++R D  VWNAM+ G++++
Sbjct: 336 IWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMN 395

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A    ++F+ +E   + PD  TF+GLL  C+H G V EGR++F++M+  +S+ P +EH
Sbjct: 396 GHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEH 455

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDLLGRAG + EA+ LI +M M+P+ VVW ALL  C+  K   L E  +  +  L 
Sbjct: 456 YGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELE 515

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G+YV LSN+Y    RW+ AE +R  MK++ ++K +  SW+E+ G++H+F  GD+SH
Sbjct: 516 PWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSH 575

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
             ++ I   L  L +  K+ G +P TE VL D+ EEEKE  L +HSEKLA+A+G++ + P
Sbjct: 576 WLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPP 635

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IR+ KNLR+C DCH  IK+IS++ +R II+RD  RFH F  G CSC DYW
Sbjct: 636 NHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 124/218 (56%), Gaps = 4/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +PDK+VVSW ++I G++ +  F EA+  F+++L   ++PD F+   V+  CARLG     
Sbjct: 175 IPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSG 234

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+   I +  +  N  ++ +L+DMY KCG ++ A  +F  +   D+  W+ MI G A +
Sbjct: 235 EWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFN 294

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLE 179
           GL   A  +F +M+  N+ PD  T +G+L+AC+  G ++ G      M R+ +   P L 
Sbjct: 295 GLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLG 354

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              A++D+  + G + +A+ + T+M  + D VVW A++
Sbjct: 355 --TALIDMYSKCGSVTQAWEIFTAMKRK-DRVVWNAMM 389



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 104/217 (47%), Gaps = 2/217 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + ++  WN+MI G V    FD+A+  +  M      P+ FT   V+  CAR   +     
Sbjct: 76  EPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLK 135

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+L+++   + +  +  +L+ +Y KC     A +VFD +   +V  W A+I+G    G 
Sbjct: 136 IHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGH 195

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A   F K+    + PDS + + +L AC+  G    G ++ D   S   +   +    
Sbjct: 196 FREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSG-EWIDRYISDSGMGRNVFVAT 254

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +++D+  + G++E A  LI S   E D+V W  ++  
Sbjct: 255 SLLDMYVKCGNLERA-NLIFSAMPEKDIVSWSTMIQG 290



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 71/190 (37%), Gaps = 38/190 (20%)

Query: 74  LNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM 133
           LN IL  AL       G    +K VF  V+  ++ +WN MI G+       DA  ++  M
Sbjct: 51  LNLILCCAL-----DFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSM 105

Query: 134 EMFNVLPDSITFLGLLTACS-----------HCGLVEEGRKY-----------------F 165
                LP++ T   +L AC+           H  LV+ G  +                 F
Sbjct: 106 RGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNF 165

Query: 166 DHMRSRYSIQP--QLEHYGAMVDLLGRAGHIEEAYGL---ITSMTMEPDVVVWRALLSAC 220
           D     +   P   +  + A++     +GH  EA G    +  M ++PD      +L+AC
Sbjct: 166 DDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAAC 225

Query: 221 RTFKRLELGE 230
                   GE
Sbjct: 226 ARLGDCTSGE 235


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/416 (45%), Positives = 264/416 (63%), Gaps = 9/416 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D VSW +MI G+V  ARF EAL  FREM  S V  D+FT  SVI  CA+LGAL   
Sbjct: 215 MPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMG 274

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WV   +  + I+++  +  ALIDMYSKCG I+ A +VF  +   D   W A+I G+A++
Sbjct: 275 EWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVN 334

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M   +  PD +TF+G+LTAC+H GLV++GR++F  M   Y+I P + H
Sbjct: 335 GYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVH 394

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG ++DLLGRAG I EA   I  M M P+  +W  LL+ACR     E+GE+      RL+
Sbjct: 395 YGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELV---AERLL 451

Query: 241 GGD------YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294
             D      Y+LLSN+Y    RW+    +R  + +KG++K  G S +E+ G+IH+F AGD
Sbjct: 452 ELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHEFVAGD 511

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
           +SHP ++ I   L S+I    + G+ P    V ++V+E+EK+  LY HSEKLA+A+ +L 
Sbjct: 512 QSHPMSKEIYSKLESIISDLNNVGYFPDVTEVFVEVAEKEKKKVLYWHSEKLAIAFALLS 571

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + P T IRI KNLR+C DCH+ IK+ISRL  R ++VRDR RFH F  G CSC DYW
Sbjct: 572 SKPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 627



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 108/244 (44%), Gaps = 36/244 (14%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALN--HAYWVH 64
           V+WN++I G  R  RF E+   F +M  +   P   T+ SV+  C + G  +      VH
Sbjct: 88  VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGK-GTRDVLLGMQVH 146

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             ++   +  +  +  AL+DMY++C  +  A +VFD +Q   V  W +++SG+A  G   
Sbjct: 147 GRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVD 206

Query: 125 DASAIFTKM-------------------------EMF------NVLPDSITFLGLLTACS 153
           +A  +F +M                         EMF      NV  D  T + ++TAC+
Sbjct: 207 EARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACA 266

Query: 154 HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVW 213
             G +E G     +M SR  I+       A++D+  + G IE A  +   M    D   W
Sbjct: 267 QLGALEMGEWVRVYM-SRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHR-DKFTW 324

Query: 214 RALL 217
            A++
Sbjct: 325 TAII 328



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 89/208 (42%), Gaps = 21/208 (10%)

Query: 23  DEALRFFREMLSSKVEPDKFTFASVIYGCARL----GALNHAYWVHNLIIEKKIELNFIL 78
           ++A+  +  ML+    PD +TF +++   AR     G+   A  VH  ++   +  N  +
Sbjct: 1   EDAVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHV 60

Query: 79  SAALIDMYSKCGKIQMAKEVFDTVQRNDVSV-WNAMISGVAIHGLAADASAIFTKMEMFN 137
           +++L+  Y+  G    A+ +   V   D  V WNA+ISG    G   ++   F  M    
Sbjct: 61  ASSLVAAYTAGGDGAAARAL---VGECDTPVAWNALISGHNRGGRFGESCGSFVDMARAG 117

Query: 138 VLPDSITFLGLLTACSH------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRA 191
             P  +T++ +L+AC         G+   GR           + P L    A+VD+    
Sbjct: 118 AAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGS------GVLPDLRVENALVDMYAEC 171

Query: 192 GHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +  A+ +   M +   VV W +LLS 
Sbjct: 172 ADMGSAWKVFDGMQVR-SVVSWTSLLSG 198


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/412 (44%), Positives = 265/412 (64%), Gaps = 3/412 (0%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P KD V+W++MIGG+ R      A+  FREM  + V PD+ T  SV+  CA LGAL    
Sbjct: 294 PVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGK 353

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           W+ + I  K I  +  L  ALIDM++KCG +  A +VF  ++   +  W +MI G+A+HG
Sbjct: 354 WLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHG 413

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              +A  +F +M    V PD + F+G+L+ACSH GLV++G  YF+ M + +SI P++EHY
Sbjct: 414 RGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHY 473

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
           G MVD+L RAG + EA   + +M +EP+ V+WR++++AC     L+LGE     + R   
Sbjct: 474 GCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVAKELIRREP 533

Query: 242 ---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
               +YVLLSN+Y  L RW+    VRE+M  KG+RK  G + +E+   I++F AGD+SH 
Sbjct: 534 SHESNYVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSHD 593

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           + + I +++  + +  K  G++P T  VL+D+ EE+KE  LY HSEKLA+A+ +L T PG
Sbjct: 594 QYKEIYEMVEEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLSTPPG 653

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T IRI KNLR+C DCHS  K IS++  R I+VRDR RFH F+ GLCSCGD+W
Sbjct: 654 TPIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCGDFW 705



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 110/223 (49%), Gaps = 10/223 (4%)

Query: 2   PDKDVVSWNSMIGGFVRNARF-DEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           P  D   +N++I  F +       ALRF+  M    V P+KFTF  V+  CA +  L   
Sbjct: 187 PSHDAFLFNTLIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELG 246

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKC------GKIQMAKEVFDTVQRNDVSVWNAMI 114
             VH  +++   E +  +   L+ MY  C      G +  AK+VFD     D   W+AMI
Sbjct: 247 GAVHASMVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPVS-AKKVFDESPVKDSVTWSAMI 305

Query: 115 SGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI 174
            G A  G +A A  +F +M++  V PD IT + +L+AC+  G +E G K+ +    R +I
Sbjct: 306 GGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELG-KWLESYIERKNI 364

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              +E   A++D+  + G ++ A  +   M +   +V W +++
Sbjct: 365 MRSVELCNALIDMFAKCGDVDRAVKVFREMKVR-TIVSWTSMI 406



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 12/128 (9%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  + +VSW SMI G   + R  EA+  F EM+   V+PD   F  V+  C+  G ++  
Sbjct: 394 MKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKG 453

Query: 61  YWVHNLI-----IEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT--VQRNDVSVWNAM 113
           ++  N +     I  KIE        ++DM S+ G++  A E      V+ N V +W ++
Sbjct: 454 HYYFNTMENMFSIVPKIE----HYGCMVDMLSRAGRVNEALEFVRAMPVEPNQV-IWRSI 508

Query: 114 ISGVAIHG 121
           ++     G
Sbjct: 509 VTACHARG 516


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/413 (46%), Positives = 267/413 (64%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D V W  +I G VRN  F+  L  FREM    VEP++ TF  V+  CA+LGAL   
Sbjct: 217 MGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELG 276

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H  + +  +E+N  ++ ALI+MYS+CG I  A+ +FD V+  DVS +N+MI G+A+H
Sbjct: 277 RWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALH 336

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G + +A  +F++M    V P+ ITF+G+L ACSH GLV+ G + F+ M   + I+P++EH
Sbjct: 337 GKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEH 396

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNIS--- 237
           YG MVD+LGR G +EEA+  I  M +E D  +  +LLSAC+  K + +GE     +S   
Sbjct: 397 YGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLLSEHY 456

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
           R+  G +++LSN Y  L RW  A  VRE M+K G+ K  G S +E+   IH+F +GD  H
Sbjct: 457 RIDSGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNNAIHEFFSGDLRH 516

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE + I K L  L   TK EG+LPATE+ L D+ +E+KE  L  HSE+LA+ YG++ T  
Sbjct: 517 PERKRIYKKLEELNYLTKFEGYLPATEVALHDIDDEQKELALAVHSERLAICYGLVSTEA 576

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T +R+ KNLRIC DCH+ IK+I+++ RR I+VRDR RFH FE G CSC DYW
Sbjct: 577 YTTLRVGKNLRICDDCHAMIKLIAKITRRKIVVRDRNRFHHFENGECSCKDYW 629



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 116/248 (46%), Gaps = 33/248 (13%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + +V  + S+I GFV    + +A+  F +M+   V  D +   +++  C    AL     
Sbjct: 87  NPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKE 146

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV------------- 109
           VH L+++  + L+  ++  L+++Y KCG ++ A+++FD +   DV               
Sbjct: 147 VHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGM 206

Query: 110 ------------------WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
                             W  +I G+  +G       +F +M++  V P+ +TF+ +L+A
Sbjct: 207 VEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSA 266

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           C+  G +E GR    +MR +  ++      GA++++  R G I+EA  L   + ++ DV 
Sbjct: 267 CAQLGALELGRWIHAYMR-KCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVK-DVS 324

Query: 212 VWRALLSA 219
            + +++  
Sbjct: 325 TYNSMIGG 332


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/413 (44%), Positives = 267/413 (64%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KD+VSW++MI G+  N    +AL  F +M S  ++PD +T   V+  CA LGAL+  
Sbjct: 276 MPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLG 335

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W  +L+   +   N +L  ALIDMYSKCG +  A E+F  +++ D  VWNAM+ G++++
Sbjct: 336 IWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMN 395

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A    ++F+ +E   + PD  TF+GLL  C+H G V EGR++F++M+  +S+ P +EH
Sbjct: 396 GHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEH 455

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDLLGRAG + EA+ LI +M M+P+ VVW ALL  C+  K   L E  +  +  L 
Sbjct: 456 YGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELE 515

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G+YV LSN+Y    RW+ AE +R  MK++ ++K +  SW+E+ G++H+F  GD+SH
Sbjct: 516 PWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSH 575

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
             ++ I   L  L +  K+ G +P TE VL D+ EEEKE  L +HSEKLA+A+G++ + P
Sbjct: 576 WLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPP 635

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IR+ KNLR+C DCH  IK+IS++ +R II+RD  RFH F  G CSC DYW
Sbjct: 636 NHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 124/218 (56%), Gaps = 4/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +PDK+VVSW ++I G++ +  F EA+  F+++L   ++PD F+   V+  CARLG     
Sbjct: 175 IPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSG 234

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+   I +  +  N  ++ +L+DMY KCG ++ A  +F  +   D+  W+ MI G A +
Sbjct: 235 EWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFN 294

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLE 179
           GL   A  +F +M+  N+ PD  T +G+L+AC+  G ++ G      M R+ +   P L 
Sbjct: 295 GLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLG 354

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              A++D+  + G + +A+ + T+M  + D VVW A++
Sbjct: 355 --TALIDMYSKCGSVTQAWEIFTAMK-KKDRVVWNAMM 389



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 104/217 (47%), Gaps = 2/217 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + ++  WN+MI G V    FD+A+  +  M      P+ FT   V+  CAR   +     
Sbjct: 76  EPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLK 135

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+L+++   + +  +  +L+ +Y KC     A +VFD +   +V  W A+I+G    G 
Sbjct: 136 IHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGH 195

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A   F K+    + PDS + + +L AC+  G    G ++ D   S   +   +    
Sbjct: 196 FREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSG-EWIDRYISDSGMGRNVFVAT 254

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +++D+  + G++E A  LI S   E D+V W  ++  
Sbjct: 255 SLLDMYVKCGNLERA-NLIFSAMPEKDIVSWSTMIQG 290



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 71/190 (37%), Gaps = 38/190 (20%)

Query: 74  LNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM 133
           LN IL  AL       G    +K VF  V+  ++ +WN MI G+       DA  ++  M
Sbjct: 51  LNLILCCAL-----DFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSM 105

Query: 134 EMFNVLPDSITFLGLLTACS-----------HCGLVEEGRKY-----------------F 165
                LP++ T   +L AC+           H  LV+ G  +                 F
Sbjct: 106 RGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNF 165

Query: 166 DHMRSRYSIQP--QLEHYGAMVDLLGRAGHIEEAYGL---ITSMTMEPDVVVWRALLSAC 220
           D     +   P   +  + A++     +GH  EA G    +  M ++PD      +L+AC
Sbjct: 166 DDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAAC 225

Query: 221 RTFKRLELGE 230
                   GE
Sbjct: 226 ARLGDCTSGE 235


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/416 (46%), Positives = 272/416 (65%), Gaps = 7/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS---SKVEPDKFTFASVIYGCARLGAL 57
           MP+K+V+SW+ MI G+V    +  AL  FR + +   S++ P++FT +SV+  CARLGAL
Sbjct: 152 MPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGAL 211

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISG 116
            H  WVH  I +  ++++ +L  +LIDMY+KCG I+ AK +FD +    DV  W+AMI+ 
Sbjct: 212 QHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITA 271

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
            ++HGL+ +   +F +M    V P+++TF+ +L AC H GLV EG +YF  M + Y + P
Sbjct: 272 FSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSP 331

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNI 236
            ++HYG MVDL  RAG IE+A+ ++ SM MEPDV++W ALL+  R    +E  E+AI  +
Sbjct: 332 MIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITKL 391

Query: 237 SRLMGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
             L   +   YVLLSN+Y  L RW    ++R++M+ +G++K  G S +E+ GVI +F AG
Sbjct: 392 LELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPGCSLVEVDGVIREFFAG 451

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           D SHPE   +  +L  +++R +  G+   T  VL+D+ EE KE  L  HSEKLA+AY  L
Sbjct: 452 DNSHPELLNLYVMLDEIMKRLEKHGYERNTGEVLLDLDEEGKEFALSLHSEKLAIAYCFL 511

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDY 409
           +TSPGT IRI KNLRIC DCH  IK+IS+   R IIVRD  RFH F+ GLCSC DY
Sbjct: 512 RTSPGTTIRIVKNLRICSDCHVAIKIISKEFNREIIVRDCNRFHHFKNGLCSCKDY 567



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 107/256 (41%), Gaps = 42/256 (16%)

Query: 2   PDKDVVSWNSMIGGFVR----NARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGAL 57
           P+ +   WN++I    R    N  F  AL  +  M    V PD  TF  ++     +   
Sbjct: 20  PNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQS---INTP 76

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
           +    +H  I+   +  +  +  +LI+MYS CG    A++ FD + + D+  WNA+I   
Sbjct: 77  HRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHAN 136

Query: 118 AIHGLAADASAIFTKMEMFNVL----------------------------------PDSI 143
           A  G+   A  +F +M   NV+                                  P+  
Sbjct: 137 AKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEF 196

Query: 144 TFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
           T   +L+AC+  G ++ G K+      +  ++  +    +++D+  + G IE A  +  +
Sbjct: 197 TMSSVLSACARLGALQHG-KWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDN 255

Query: 204 MTMEPDVVVWRALLSA 219
           +  E DV+ W A+++A
Sbjct: 256 LGPEKDVMAWSAMITA 271


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/414 (44%), Positives = 269/414 (64%), Gaps = 5/414 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD VS++++I G V+N   ++AL  FR+M SS + P   T  +++  C+ L AL H 
Sbjct: 373 MIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHG 432

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H   + +    +  +  A+IDMYSKCGKI +++E+FD +Q  D+  WN MI G  IH
Sbjct: 433 TCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIH 492

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A ++F +++   + PD +T + +L+ACSH GLV EG+ +F  M   ++I+P++ H
Sbjct: 493 GLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAH 552

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MVDLL RAG+++EAY  I  M   P+V +W ALL+ACRT K +E+GE     I +L+
Sbjct: 553 YICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKI-QLL 611

Query: 241 G----GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
           G    G++VL+SN+Y  + RWD A  +R I +  G +KS G SW+E++GVIH F  G +S
Sbjct: 612 GPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQS 671

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP++ +I+K L  L+ + K  G+   +  VL DV EEEKE  L +HSEK+A+A+GIL TS
Sbjct: 672 HPQSASINKKLQELLVQMKKLGYRADSSFVLHDVEEEEKEQILLYHSEKVAIAFGILNTS 731

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           P + I ++KNLRIC DCHS IK I+ L  R I VRD  RFH F+ G+C+C D+W
Sbjct: 732 PSSRILVTKNLRICVDCHSAIKFITLLTEREITVRDASRFHHFKDGICNCQDFW 785



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 117/225 (52%), Gaps = 15/225 (6%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALN---- 58
           D+D+V+WN+MI  F  +A   + +    +M  + V P+  T  S++    +  AL+    
Sbjct: 172 DRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKA 231

Query: 59  -HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
            HAY++ N   +     N +L  AL+DMY+KC  +  A+++F+TV + +   W+AMI G 
Sbjct: 232 IHAYYIRNFFFD-----NVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGY 286

Query: 118 AIHGLAADASAIFTKME-MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQ 175
            +H   +DA A++  M  ++ + P   T   +L AC+    ++ G+K   HM +S   + 
Sbjct: 287 VLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLD 346

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
             +    +++ +  + G ++ A G +  M +  D V + A++S C
Sbjct: 347 TTVG--NSLISMYAKCGIMDNAVGFLDEM-IAKDTVSYSAIISGC 388



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 116/256 (45%), Gaps = 44/256 (17%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYW 62
           K+ V W++MIGG+V +    +AL  + +ML    + P   T A+++  CA+L  L     
Sbjct: 274 KNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKK 333

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  +I+  ++L+  +  +LI MY+KCG +  A    D +   D   ++A+ISG   +G 
Sbjct: 334 LHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGY 393

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSH---------------------------- 154
           A  A  IF +M+   + P   T + LL ACSH                            
Sbjct: 394 AEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNA 453

Query: 155 -------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL---ITSM 204
                  CG +   R+ FD M++R  I      +  M+   G  G   EA  L   + ++
Sbjct: 454 IIDMYSKCGKITISREIFDRMQNRDIIS-----WNTMIIGYGIHGLCVEALSLFQELQAL 508

Query: 205 TMEPDVVVWRALLSAC 220
            ++PD V   A+LSAC
Sbjct: 509 GLKPDDVTLIAVLSAC 524



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 2/164 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P   VV WN MI  +  +  F +++  +  ML   V P  FTF  ++  C+ L AL   
Sbjct: 67  IPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSSLQALQLG 126

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV--QRNDVSVWNAMISGVA 118
             +H       + ++  +S AL+ MY+KCG +  A+ +F+++  Q  D+  WNAMI+  +
Sbjct: 127 RLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFS 186

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR 162
            H L A       +M+   V P+S T + +L        + +G+
Sbjct: 187 FHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGK 230



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 2/131 (1%)

Query: 90  GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
            +IQ+A+ VFD + +  V +WN MI   A  G    +  ++  M    V P + TF  LL
Sbjct: 55  NEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLL 114

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP- 208
            ACS    ++ GR    H      +   L    A++ +  + GH+ +A  L  S++ +  
Sbjct: 115 KACSSLQALQLGRLIHTHAHI-LGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDR 173

Query: 209 DVVVWRALLSA 219
           D+V W A+++A
Sbjct: 174 DIVAWNAMIAA 184


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/417 (43%), Positives = 270/417 (64%), Gaps = 11/417 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +  V+W++MIGG+VR     +A+  FREM ++ V+ D+ T   V+     LGAL  A
Sbjct: 190 MPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQADEVTVIGVLAAATDLGALELA 249

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WV   +  + I  +  L  ALID  +KCG +  A  VF+ +Q+  V  W ++I  +A+ 
Sbjct: 250 RWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAME 309

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M++  V PD + F+G+LTACSH G+V+EG  YFD M+  Y I+P++EH
Sbjct: 310 GRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEH 369

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG MVD+ GRAG +E A   + +M ++P+ V+WR+L+SACR   RLELGE    +I+R +
Sbjct: 370 YGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGE----SITRSL 425

Query: 241 -------GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
                    +Y++LSN++   +RW     +R  M K+G++K  G S +EL G +H+F AG
Sbjct: 426 LHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAG 485

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           D SHP+ + I +++  + +  +  G + AT  VL+D+ EE+KEG L  HSEKLA+A+ +L
Sbjct: 486 DESHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFALL 545

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           +T PGT++R+ KNLR+C DCH+ IK IS++ RR I+VRDR RFHRF+ G CSC D+W
Sbjct: 546 RTPPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 94/198 (47%), Gaps = 5/198 (2%)

Query: 25  ALRFFREMLSSKVEPDKFTFASVIYGCARL-GALNHAYWVHNLIIEKKIELNFILSAALI 83
           A  FF  ML   V P+KFTF  ++  CA L G+ +     H   ++     +  +S  LI
Sbjct: 110 AAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLI 169

Query: 84  DMYSKCGK--IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
            MYS  G   +  A+ VFD + +     W+AMI G    GL++DA  +F +M+   V  D
Sbjct: 170 HMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQAD 229

Query: 142 SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
            +T +G+L A +  G +E  R +      R  I   +    A++D L + G ++ A  + 
Sbjct: 230 EVTVIGVLAAATDLGALELAR-WVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVF 288

Query: 202 TSMTMEPDVVVWRALLSA 219
             M     VV W +++ A
Sbjct: 289 EGMQQR-SVVSWTSVIDA 305


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/414 (44%), Positives = 259/414 (62%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P +DVV+W +M+ G+ +    DEA+  FR M    ++PDK TF SV+  C+    L   
Sbjct: 310 LPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEG 369

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV-AI 119
             +H  ++     L+  L +AL+ MY+KCG +  A  VF+ +   +V  W A+I+G  A 
Sbjct: 370 KRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQ 429

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +A   F +M+   + PD +TF  +L+AC+H GLVEEGRK+F  M   Y I+P +E
Sbjct: 430 HGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVE 489

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY   VDLLGRAGH+EEA  +I SM   P   VW ALLSACR    +E GE A  N+ +L
Sbjct: 490 HYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKL 549

Query: 240 MGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
              D   YV LS++Y    R++ AE VR++M+K+ V K  G+SW+E+ G +H F   D+S
Sbjct: 550 DPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKS 609

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HPE++ I   LG L ++ K  G++P T  VL DV EE+KE  L+ HSE+LA+ YG++KT 
Sbjct: 610 HPESEQIYVELGKLTEQIKEMGYVPDTRFVLHDVDEEQKERILFSHSERLAITYGLMKTP 669

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PG  IRI KNLR+C DCH+  K IS+++ R II RD  RFH F  G+CSCGD+W
Sbjct: 670 PGMPIRIVKNLRVCGDCHTATKFISKVVGREIIARDAQRFHHFADGVCSCGDFW 723



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 123/221 (55%), Gaps = 4/221 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+K+VV+W  +I G+ +  + D AL     M  ++V P+K TFAS++ GC    AL H 
Sbjct: 209 LPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHG 268

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  II+        +  +LI MY KCG ++ A+++F  +   DV  W AM++G A  
Sbjct: 269 KKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQL 328

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLE 179
           G   +A  +F +M+   + PD +TF  +LT+CS    ++EG++    +  + Y++   L+
Sbjct: 329 GFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQ 388

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
              A+V +  + G +++A  +   M+ E +VV W A+++ C
Sbjct: 389 --SALVSMYAKCGSMDDASLVFNQMS-ERNVVAWTAIITGC 426



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 10/221 (4%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+++VSW +MI  FV   +  EA + +  M  +  +PDK TF S++        L     
Sbjct: 110 DRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQK 169

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  I+E  +EL   +  +L+ MY+KCG I  A+ +FD +   +V  W  +I+G A  G 
Sbjct: 170 VHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQ 229

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP----QL 178
              A  +   M+   V P+ ITF  +L  C+    +E G+K       RY IQ     +L
Sbjct: 230 VDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVH-----RYIIQSGYGREL 284

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               +++ +  + G +EEA  L + +    DVV W A+++ 
Sbjct: 285 WVVNSLITMYCKCGGLEEARKLFSDLPHR-DVVTWTAMVTG 324



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 99/203 (48%), Gaps = 4/203 (1%)

Query: 18  RNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFI 77
           +  R  EAL     M+          F  ++  CARL +L     VH  I++  I+ N  
Sbjct: 24  KTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 83

Query: 78  LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFN 137
           L   L+ MY+KCG +  A+ VFD+++  ++  W AMI          +A   +  M++  
Sbjct: 84  LENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAG 143

Query: 138 VLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196
             PD +TF+ LL A ++  L++ G+K + + + +   ++P++    ++V +  + G I +
Sbjct: 144 CKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG--TSLVGMYAKCGDISK 201

Query: 197 AYGLITSMTMEPDVVVWRALLSA 219
           A  +I     E +VV W  L++ 
Sbjct: 202 AR-VIFDRLPEKNVVTWTLLIAG 223


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/416 (45%), Positives = 268/416 (64%), Gaps = 7/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + +KDV+SWN+MIGG+     + EAL  F+EML S   P+  T  S++  CA+LGA++  
Sbjct: 296 LSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFG 355

Query: 61  YWVHNLIIEKKIE---LNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
            W+H + I+K+I+       L  +LIDMY+KCG I+ A +VF+++    +S  NAMI G 
Sbjct: 356 RWIH-VYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGF 414

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           A+HG A  A  IF++M    + PD ITF+GLL+ACSH G+++ GR+ F  M   Y I P+
Sbjct: 415 AMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPK 474

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV---AIV 234
           LEHYG M+DLLG  G  +EA  +I +MTMEPD V+W +LL AC+    +ELGE     ++
Sbjct: 475 LEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLI 534

Query: 235 NISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294
            I     G YVLLSN+Y    RW+   N+R ++  KG++K  G S +E+  V+H+F  GD
Sbjct: 535 KIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGD 594

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
           + HP  + I  +L  +    +  GF+P T  VL ++ EE K+G L HHSEKLA+A+G++ 
Sbjct: 595 KFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEFKQGALRHHSEKLAIAFGLIS 654

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T PGT++ I KNLR+C +CH   K+IS++ +R II RDR RFH F  G+CSC DYW
Sbjct: 655 TKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 133/290 (45%), Gaps = 43/290 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KDVVSWN++I G+       EAL  F+EM+ + V+PD+ T  +V+  CA+ G++   
Sbjct: 195 IPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLG 254

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ I +  +  N  +  ALID+YSKCG+++ A  +F  +   DV  WN MI G    
Sbjct: 255 RQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHL 314

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---KYFDHMRSRYSIQPQ 177
            L  +A  +F +M      P+ +T L +L AC+  G ++ GR    Y D      +    
Sbjct: 315 NLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASS 374

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSM--------------------------------- 204
           L    +++D+  + G IE A+ +  SM                                 
Sbjct: 375 LR--TSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRK 432

Query: 205 -TMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCY 253
             +EPD + +  LLSAC     L+LG      I R M  +Y +   +  Y
Sbjct: 433 NGIEPDDITFVGLLSACSHSGMLDLGR----RIFRSMTQNYKITPKLEHY 478



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 116/248 (46%), Gaps = 33/248 (13%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + +++ WN+M  G   ++    A++ +  M+S  + P+ +TF  ++  CA+L        
Sbjct: 65  EPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQ 124

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGK------------------------------- 91
           +H  +++   EL+  +  +LI MY K G+                               
Sbjct: 125 IHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGY 184

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           I+ A+++FD +   DV  WNA+ISG A  G   +A  +F +M   NV PD  T + +++A
Sbjct: 185 IESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSA 244

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           C+  G ++ GR+    +   + +   L+   A++DL  + G +E A GL   ++   DV+
Sbjct: 245 CAQSGSIQLGRQVHSWI-DDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLS-NKDVI 302

Query: 212 VWRALLSA 219
            W  ++  
Sbjct: 303 SWNTMIGG 310



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 83/176 (47%), Gaps = 6/176 (3%)

Query: 46  SVIYGCARLGALN--HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           S+++ C  L +L   HA  +   +      L+ +L   ++        +  A  VF+T+Q
Sbjct: 7   SLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILS--PNFDGLPYAISVFETIQ 64

Query: 104 RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
             ++ +WN M  G A+      A  ++  M    +LP+S TF  LL +C+   + +EG++
Sbjct: 65  EPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQ 124

Query: 164 YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              H+  +   +  L  + +++ +  + G  ++A+ +    +   DVV + AL++ 
Sbjct: 125 IHGHVL-KLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHR-DVVSYTALITG 178


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/413 (45%), Positives = 256/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD ++WN+MI G+V+  +  EAL  F  M    V+ ++ +  SV+  C+ LGAL+  
Sbjct: 203 MSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQG 262

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W H  I   K+ +   L  ALIDMY+KCG +  A EVF  ++  +V  W++ I G+A++
Sbjct: 263 RWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMN 322

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G       +F+ M+  +V P+ ITF+ +L  CS  GLVEEGRK+F+ M   Y I+P+LEH
Sbjct: 323 GAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEH 382

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDL GRAGH++EA   I SM + P V  W ALL+AC+ ++ +E+GE+A   IV + 
Sbjct: 383 YGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGELASRKIVELE 442

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y   K WD   NVR+ M  KGVRK  G S +E+ G +H+F  GD+SH
Sbjct: 443 AKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEVGGEVHEFFVGDKSH 502

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    I  +LG + +R K  G++  T  V  D+ EEEKE  L  HSEK+A+A+G++  SP
Sbjct: 503 PRYAEIQVMLGEISRRLKLSGYVANTNPVFFDIEEEEKEDALCMHSEKIAIAFGLISLSP 562

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IRI KNLR+C DCH   KMIS+   R I+VRDR RFH F  G CSC  YW
Sbjct: 563 DVPIRIVKNLRVCWDCHDATKMISKAFNREIVVRDRNRFHHFRDGECSCKGYW 615



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 112/248 (45%), Gaps = 35/248 (14%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK--VEPDKFTFASVIYGCARLGALNHA 60
           +  + ++NSMI    +++    +  F+  +L S   + PD +TF  ++   A+L A    
Sbjct: 71  NPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTG 130

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYS-------------------------------KC 89
             VH   ++   E +  + + LI MY+                               K 
Sbjct: 131 SSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKM 190

Query: 90  GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
           G +  A+++FD +   D   WNAMISG    G + +A ++F  M+   V  + ++ + +L
Sbjct: 191 GDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVL 250

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
           +ACSH G +++GR    ++  R  ++  L    A++D+  + G++ +A  +   M  E +
Sbjct: 251 SACSHLGALDQGRWAHAYIE-RNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMK-EKN 308

Query: 210 VVVWRALL 217
           V  W + +
Sbjct: 309 VYTWSSAI 316


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/417 (43%), Positives = 270/417 (64%), Gaps = 11/417 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +  V+W++MIGG+VR     +A+  FREM ++ V+ D+ T   V+     LGAL  A
Sbjct: 190 MPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALELA 249

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WV   +  + I  +  L  ALID  +KCG +  A  VF+ +Q+  V  W ++I  +A+ 
Sbjct: 250 RWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAME 309

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M++  V PD + F+G+LTACSH G+V+EG  YFD M+  Y I+P++EH
Sbjct: 310 GRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEH 369

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG MVD+ GRAG +E A   + +M ++P+ V+WR+L+SACR   RLELGE    +I+R +
Sbjct: 370 YGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGE----SITRSL 425

Query: 241 -------GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
                    +Y++LSN++   +RW     +R  M K+G++K  G S +EL G +H+F AG
Sbjct: 426 LHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAG 485

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           D SHP+ + I +++  + +  +  G + AT  VL+D+ EE+KEG L  HSEKLA+A+ +L
Sbjct: 486 DESHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFALL 545

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           +T PGT++R+ KNLR+C DCH+ IK IS++ RR I+VRDR RFHRF+ G CSC D+W
Sbjct: 546 RTPPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 94/198 (47%), Gaps = 5/198 (2%)

Query: 25  ALRFFREMLSSKVEPDKFTFASVIYGCARL-GALNHAYWVHNLIIEKKIELNFILSAALI 83
           A  FF  ML   V P+KFTF  ++  CA L G+ +     H   ++     +  +S  LI
Sbjct: 110 AAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLI 169

Query: 84  DMYSKCGK--IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
            MYS  G   +  A+ VFD + +     W+AMI G    GL++DA  +F +M+   V  D
Sbjct: 170 HMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQAD 229

Query: 142 SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
            +T +G+L A +  G +E  R +      R  I   +    A++D L + G ++ A  + 
Sbjct: 230 EVTVIGVLAAATDLGALELAR-WVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVF 288

Query: 202 TSMTMEPDVVVWRALLSA 219
             M     VV W +++ A
Sbjct: 289 EGMQQR-SVVSWTSVIDA 305


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/413 (42%), Positives = 264/413 (63%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + ++D +SWNS+I G V+N  FDE LRFFR+ML +K++P  ++F+S++  CA L  L+  
Sbjct: 300 LTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLG 359

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I     + N  ++++L+DMY+KCG I+ AK++FD ++  D+  W AMI G A+H
Sbjct: 360 KQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALH 419

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A DA  +F +ME   + P+ + F+ +LTACSH GLV+E  KYF+ M   + I P +EH
Sbjct: 420 GQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEH 479

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y A+ DLLGRAG +EEAY  I  M + P   +W  LLSACR    +++ E     I+ + 
Sbjct: 480 YAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVD 539

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y+LL+N+Y   +RW  A   R  M++ G+RK+   SW+E+   ++ F AGD SH
Sbjct: 540 PNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESH 599

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + I + +  L++  + EG++P T  V  DV EE+K+  +  HSE+LA+ +GI+ T  
Sbjct: 600 PCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPA 659

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR++KNLR+C DCH+  K IS+++ R I+VRD  RFH F+ G CSCGDYW
Sbjct: 660 GMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 712



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 120/220 (54%), Gaps = 2/220 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KD+VSWN++I G  RN  ++E LR  REM  + ++PD FT +SV+   A    ++  
Sbjct: 199 MPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRG 258

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   I + ++ +  ++++LIDMY+KC ++  +  VF  +   D   WN++I+G   +
Sbjct: 259 KEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQN 318

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +    F +M M  + P S +F  ++ AC+H   +  G++   ++ +R      +  
Sbjct: 319 GLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYI-TRNGFDENIFI 377

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
             ++VD+  + G+I  A  +   M +  D+V W A++  C
Sbjct: 378 ASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGC 416



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 107/246 (43%), Gaps = 34/246 (13%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           ++W S+I  +  +    ++L  F  ML+S + PD   F SV+  CA L  LN    +H  
Sbjct: 72  LAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGY 131

Query: 67  IIEKKIELNFILSAALIDMYSK------CGKIQM-AKEVFDTVQRNDVSV---------- 109
           II   ++ +     AL++MYSK       G+ ++ A EVFD +     SV          
Sbjct: 132 IIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDS 191

Query: 110 ---------------WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
                          WN +I+G A +GL  +   +  +M   N+ PDS T   +L   + 
Sbjct: 192 VRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAE 251

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
              +  G++       R  +   +    +++D+  +   + ++  + T +T E D + W 
Sbjct: 252 NVDISRGKE-IHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLT-ERDGISWN 309

Query: 215 ALLSAC 220
           ++++ C
Sbjct: 310 SIIAGC 315


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/411 (44%), Positives = 262/411 (63%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+D  SW+SMI  + +     EAL  +REM  + V PD  +  SV+  C+ +GAL     
Sbjct: 175 DRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAE 234

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  +   ++E++  L  AL+DMY+KCG I+ + +VF  +   DV  W++MI G+A HGL
Sbjct: 235 VHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGL 294

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             DA ++F++M    + P+ ITF+G+L AC+H GLV +G+KYF  M   + + P++EHYG
Sbjct: 295 GHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYG 354

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVN---ISRL 239
            MVDLLGRAGH+EEA  LI SMT +PD ++WR LL ACR  K +E+ E A+     +  L
Sbjct: 355 CMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPL 414

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             G YVLLSN+Y     W+    +R+ ++++ +++  G+S +E    +H+F +GDRSHP 
Sbjct: 415 ADGHYVLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIEWENTVHEFVSGDRSHPR 474

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
            + I K+L  ++ R +  G+ P T LVL D+ E+ K+  L  HSEKLA+A+G+L T   +
Sbjct: 475 IEEIYKMLEEMMDRLRQAGYRPMTSLVLQDIDEQSKKRALAEHSEKLAIAFGLLVTPARS 534

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            +RI+KNLR C DCHS IK+IS    R +IVRDR RFH F  G CSC DYW
Sbjct: 535 TLRITKNLRACEDCHSAIKLISLAYDRKLIVRDRNRFHHFSEGQCSCKDYW 585



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 74/136 (54%), Gaps = 2/136 (1%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
           +I  Y+  G + MA+E+FD  +  D   W++MIS  A    + +A  ++ +M +  V PD
Sbjct: 153 MIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPD 212

Query: 142 SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
            I+ + +L+ACS  G +  G +    + S   ++  ++   A+VD+  + G IE +  + 
Sbjct: 213 CISMVSVLSACSAMGALAIGAEVHRFVESN-RVEVDMKLGTALVDMYAKCGDIENSLKVF 271

Query: 202 TSMTMEPDVVVWRALL 217
            +M ++ DV+ W +++
Sbjct: 272 HAMPVK-DVLTWSSMI 286



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 14/149 (9%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KDV++W+SMI G   +    +AL  F EM+S  ++P++ TF  V+  C  +G +N  
Sbjct: 274 MPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDG 333

Query: 61  --YW-----VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNA 112
             Y+     VH ++   ++E        ++D+  + G ++ A E+  ++  + D  +W  
Sbjct: 334 KKYFSSMSDVHGVV--PRMEHY----GCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRT 387

Query: 113 MISGVAIHGLAADASAIFTKMEMFNVLPD 141
           ++    IH     A     K+++ + L D
Sbjct: 388 LLGACRIHKNVEIAEEAMAKLKVLDPLAD 416



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 14/160 (8%)

Query: 75  NFILSAALIDMYSK--CGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTK 132
           +  +  AL++MY+K   G+I +A+  FD   R DV + N M++     G  A+A  +F  
Sbjct: 82  DLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLAAYVARGEVAEARKVFDG 141

Query: 133 MEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAG 192
           M       D +++  ++   +  G V   R+ FD  R R +       + +M+    +  
Sbjct: 142 MSG----RDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFS-----WSSMISAYAKGR 192

Query: 193 HIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELG 229
             +EA  L   M    + PD +   ++LSAC     L +G
Sbjct: 193 CSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIG 232


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/410 (45%), Positives = 268/410 (65%), Gaps = 4/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K+++SWN MI  +++N+   +A+  + +M   +VEPD  TFASV+  C  L AL     +
Sbjct: 251 KNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRI 310

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  + +KK+  N +L  +LIDMY++CG +  AK VFD ++  DV+ W ++IS   + G  
Sbjct: 311 HEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQG 370

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A A+FT+M      PDSI F+ +L+ACSH GL++EGR YF  M   Y I P++EHY  
Sbjct: 371 CNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYAC 430

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---M 240
           +VDLLGRAG ++EAY +I  M +EP+  VW  LLS+CR F  +++G +A  N+ +L    
Sbjct: 431 LVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQ 490

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G YVLLSN+Y    RW     +R +MK+K +RK+ G S +EL   +H F AGD SHP++
Sbjct: 491 SGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQS 550

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + I + LG L+ + K  G++P T+  L DV EE+KEG+L  HSEKLA+ + +L T    +
Sbjct: 551 KEIYEELGVLVAKMKELGYVPETDSALHDVEEEDKEGHLAVHSEKLAIVFALLNTQE-YQ 609

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IRI+KNLR+C DCH   K+IS+++ R IIVRD  RFH F+ G+CSCGDYW
Sbjct: 610 IRITKNLRVCGDCHIAAKLISKIVEREIIVRDTNRFHHFKDGVCSCGDYW 659



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 133/290 (45%), Gaps = 15/290 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D++VV +N MI  +V N R+D+ L  FREM++    PD +T+  V+  C+    L + 
Sbjct: 79  MSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYG 138

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++  ++ N  +   LI MY KCG +  A+ VFD +   DV  WN+M++G A +
Sbjct: 139 LLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHN 198

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               DA  I  +ME +   PD  T   L+ A ++     E   Y + +      +  L  
Sbjct: 199 MRFDDALEICREMEDYGQKPDGCTMASLMPAVANTS--SENVLYVEKIFVNLE-RKNLIS 255

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
           +  M+ +  +     +A  L   M    +EPD + + ++L AC     L LG      + 
Sbjct: 256 WNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVE 315

Query: 238 RLMGGDYVLLSN----MYCYLKRWDTAENVREIMKKKGVRKSQGKSWLEL 283
           +      +LL N    MY      D A+ V + MK + V      SW  L
Sbjct: 316 KKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDV-----ASWTSL 360



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 14/150 (9%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DV SW S+I  +    +   A+  F EML+S   PD   F +++  C+  G L+  
Sbjct: 349 MKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEG 408

Query: 61  -YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD--TVQRNDVSVWNAMISGV 117
             +   +  + +I       A L+D+  + G++  A  +     ++ N+  VW  ++S  
Sbjct: 409 RIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNE-RVWATLLS-- 465

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLG 147
                   +  +FT M++  +  D++  L 
Sbjct: 466 --------SCRVFTNMDIGILAADNLLQLA 487



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 8/160 (5%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H +I       N  L   L+  Y+ CG+  + ++VFD +   +V  +N MI     +  
Sbjct: 40  LHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHR 99

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS---RYSIQPQLE 179
             D   +F +M      PD+ T+  +L ACS      E  +Y   +     +  +   L 
Sbjct: 100 YDDGLLVFREMVNGGFRPDNYTYPCVLKACS----CSENLRYGLLIHGDVLKVGLDFNLF 155

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               ++ + G+ G + EA  +   M  + DVV W ++++ 
Sbjct: 156 VGNGLIAMYGKCGCLFEARRVFDEMIWK-DVVSWNSMVAG 194


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/413 (44%), Positives = 256/413 (61%), Gaps = 3/413 (0%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            MP++D++SWN MI G+ +N     AL+F  +M    V  +KF+F S++  C+   AL   
Sbjct: 749  MPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEG 808

Query: 61   YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              VH  I+++K++ +  + AALI MY+KCG ++ A+EVFD     +V  WNAMI+  A H
Sbjct: 809  KRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQH 868

Query: 121  GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            GLA+ A   F  M+   + PD  TF  +L+AC+H GLV EG + F  + S++ + P +EH
Sbjct: 869  GLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEH 928

Query: 181  YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
            YG +V LLGRAG  +EA  LI  M   PD  VW  LL ACR    + L E A  N  +L 
Sbjct: 929  YGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLN 988

Query: 241  GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              +   YVLLSN+Y    RWD    +R +M+ +G+RK  G+SW+E+  +IH+F A DRSH
Sbjct: 989  ARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSH 1048

Query: 298  PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            PE   I + L  L    +  G+ P T+ VL ++ +E +E +L  HSE+LA+AYG+LKT P
Sbjct: 1049 PETAEIYEELKRLSLEMERAGYSPDTQYVLHNLDKEHQETSLCTHSERLAIAYGLLKTPP 1108

Query: 358  GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            GT IRI KNLRIC DCH+  K IS+L+ R II RD  RFH F+ G CSC D+W
Sbjct: 1109 GTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHTFKNGKCSCEDFW 1161



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 117/217 (53%), Gaps = 4/217 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D++SWNSMI G  ++  ++ A + F EM    +EPDK TFASV+ GC    AL     +
Sbjct: 550 RDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQI 609

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H LIIE  ++L+  L  ALI+MY +CG +Q A EVF +++  +V  W AMI G A  G  
Sbjct: 610 HMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGED 669

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYG 182
             A  +F +M+     P   TF  +L AC     ++EG+K   H + S Y +   + +  
Sbjct: 670 RKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGN-- 727

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A++    ++G + +A  +   M    D++ W  +++ 
Sbjct: 728 ALISAYSKSGSMTDARKVFDKMPNR-DIMSWNKMIAG 763



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 121/218 (55%), Gaps = 4/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D++SWN++I G+ R     EA++ +++M S  V+P + TF  ++  C    A +  
Sbjct: 446 MPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDG 505

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I+   I+ N  L+ AL++MY +CG I  A+ VF+  +  D+  WN+MI+G A H
Sbjct: 506 KMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQH 565

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS-IQPQLE 179
           G    A  +F +M+   + PD ITF  +L  C +   +E GR+   HM    S +Q  + 
Sbjct: 566 GSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQI--HMLIIESGLQLDVN 623

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              A++++  R G +++AY +  S+    +V+ W A++
Sbjct: 624 LGNALINMYIRCGSLQDAYEVFHSLRHR-NVMSWTAMI 660



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 113/216 (52%), Gaps = 2/216 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++V+SW +MIGGF       +A   F +M +   +P K TF+S++  C     L+    V
Sbjct: 651 RNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKV 710

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
              I+    EL+  +  ALI  YSK G +  A++VFD +   D+  WN MI+G A +GL 
Sbjct: 711 IAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLG 770

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A     +M+   V+ +  +F+ +L ACS    +EEG++    +  R  +Q  +    A
Sbjct: 771 GTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKR-KMQGDVRVGAA 829

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++ +  + G +EEA  +  + T E +VV W A+++A
Sbjct: 830 LISMYAKCGSLEEAQEVFDNFT-EKNVVTWNAMINA 864



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 126/265 (47%), Gaps = 43/265 (16%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+DVV +N++I    ++  ++EA   + +M S  V  ++ T+ SV+  C+   AL     
Sbjct: 347 DRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGEL 406

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+ I E     +  +  +LI MY++CG +  A+E+F+T+ + D+  WNA+I+G A    
Sbjct: 407 IHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARRED 466

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSH---------------------------- 154
             +A  ++ +M+   V P  +TFL LL+AC++                            
Sbjct: 467 RGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANA 526

Query: 155 -------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT-- 205
                  CG + E +  F+  R+R  I      + +M+    + G  E AY L   M   
Sbjct: 527 LMNMYRRCGSIMEAQNVFEGTRARDIIS-----WNSMIAGHAQHGSYEAAYKLFLEMKKE 581

Query: 206 -MEPDVVVWRALLSACRTFKRLELG 229
            +EPD + + ++L  C+  + LELG
Sbjct: 582 GLEPDKITFASVLVGCKNPEALELG 606



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 137/307 (44%), Gaps = 37/307 (12%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DV+SWNS+I  + +     +A + F EM ++   P K T+ S++  C     L + 
Sbjct: 143 MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYG 202

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ IIE   + +  +  +L++MY KC  +  A++VF  + R DV  +N M+   A  
Sbjct: 203 KKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQK 262

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYF--------------- 165
               +   +F +M    + PD +T++ LL A +   +++EG++                 
Sbjct: 263 AYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVG 322

Query: 166 -----------DHMRSRYSIQPQLEH----YGAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
                      D   ++ +++   +     Y A++  L + GH EEA+     M  +  V
Sbjct: 323 TALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVV 382

Query: 211 V---VWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSN----MYCYLKRWDTAENV 263
           +    + ++L+AC T K L  GE+   +IS +     V + N    MY        A  +
Sbjct: 383 MNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRAREL 442

Query: 264 REIMKKK 270
              M K+
Sbjct: 443 FNTMPKR 449



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 108/216 (50%), Gaps = 2/216 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +DVVS+N+M+G + + A  +E +  F +M S  + PDK T+ +++        L+    +
Sbjct: 247 RDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRI 306

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H L + + +  +  +  AL  M+ +CG +  AK+  +     DV V+NA+I+ +A HG  
Sbjct: 307 HKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHY 366

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A   + +M    V+ +  T+L +L ACS    +  G     H+ S       ++   +
Sbjct: 367 EEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHI-SEVGHSSDVQIGNS 425

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++ +  R G +  A  L  +M  + D++ W A+++ 
Sbjct: 426 LISMYARCGDLPRARELFNTMP-KRDLISWNAIIAG 460



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 38/239 (15%)

Query: 30  REMLSSKVEP-----DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84
           RE LS+  +P     ++  +  ++  C R  +L  A  +H  ++E  +  +  LS  LI+
Sbjct: 66  REDLSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLIN 125

Query: 85  MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSIT 144
           MY KC  +  A +VF  + R DV  WN++IS  A  G    A  +F +M+    +P  IT
Sbjct: 126 MYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKIT 185

Query: 145 FLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEH----------------------- 180
           ++ +LTAC     +E G+K     + + Y   P++++                       
Sbjct: 186 YISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIY 245

Query: 181 ------YGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELGE 230
                 Y  M+ L  +  ++EE  GL   M+ E   PD V +  LL A  T   L+ G+
Sbjct: 246 RRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGK 304


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/413 (45%), Positives = 267/413 (64%), Gaps = 7/413 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDV+SWN++IGG+     + EAL  F+EML S   P+  T  S++  CA LGA+    W+
Sbjct: 299 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWI 358

Query: 64  HNLIIEKKIELNFILSA---ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           H + I K+++     S+   +LIDMY+KCG I+ A++VFD++    +S WNAMI G A+H
Sbjct: 359 H-VYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMH 417

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A  A  IF++M    + PD ITF+GLL+ACSH G+++ GR  F  M+  Y I P+LEH
Sbjct: 418 GRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEH 477

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG M+DLLG +G  +EA  +I +M MEPD V+W +LL AC+ +  +ELGE    N+ ++ 
Sbjct: 478 YGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIE 537

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    RW+    +R ++  KG++K  G S +E+  V+H+F  GD+ H
Sbjct: 538 PKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFH 597

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + I  +L  +    +  GF+P T  VL ++ EE KEG L HHSEKLA+A+G++ T P
Sbjct: 598 PRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKP 657

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT++ I KNLR+C +CH   K+IS++ +R II RDR RFH F  G+CSC DYW
Sbjct: 658 GTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 132/288 (45%), Gaps = 39/288 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KDVVSWN+MI G+       EAL  F+EM+ + V PD+ T  SV+  CA+  ++   
Sbjct: 195 IPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELG 254

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ I +     N  +  ALID+Y KCG+++ A  +F+ +   DV  WN +I G    
Sbjct: 255 RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHM 314

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY-SIQPQLE 179
            L  +A  +F +M      P+ +T L +L AC+H G +E GR    ++  R   +     
Sbjct: 315 NLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASS 374

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSM----------------------------------T 205
           H  +++D+  + G IE A  +  S+                                   
Sbjct: 375 HRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNE 434

Query: 206 MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCY 253
           +EPD + +  LLSAC     L+LG     +I R M  DY +   +  Y
Sbjct: 435 IEPDDITFVGLLSACSHSGMLDLGR----HIFRSMKEDYKITPKLEHY 478



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 114/246 (46%), Gaps = 33/246 (13%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + +++ WN+M  G   ++    AL  +  M+S  + P+ +TF  ++  CA+  A      
Sbjct: 65  EPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQ 124

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT--------------------- 101
           +H  +++   +L+  +  +LI MY + G+++ A++VFD                      
Sbjct: 125 IHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGY 184

Query: 102 ----------VQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
                     +   DV  WNAMISG A  G   +A  +F +M   NV PD  T + +++A
Sbjct: 185 IASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSA 244

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           C+    +E GR+    +   +     L+   A++DL  + G +E A GL   ++ + DV+
Sbjct: 245 CAQSASIELGRQVHSWI-DDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYK-DVI 302

Query: 212 VWRALL 217
            W  L+
Sbjct: 303 SWNTLI 308



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++ + SWN+MI GF  + R + A   F  M  +++EPD  TF  ++  C+  G L+    
Sbjct: 401 NRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRH 460

Query: 63  VHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIH 120
           +   + E  KI         +ID+    G  + A+E+ +T++   D  +W +++    ++
Sbjct: 461 IFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMY 520

Query: 121 G 121
            
Sbjct: 521 A 521



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 2/128 (1%)

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           +  A  VF+T+Q  ++ +WN M  G A+      A  ++  M    +LP+  TF  LL +
Sbjct: 53  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKS 112

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           C+      EG++   H+  +      L  + +++ +  + G +E+A  +    +   DVV
Sbjct: 113 CAKSKAFREGQQIHGHVL-KLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHR-DVV 170

Query: 212 VWRALLSA 219
            + AL++ 
Sbjct: 171 SYTALITG 178


>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 582

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/416 (47%), Positives = 265/416 (63%), Gaps = 6/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLGALNH 59
           MP +D VSWN++I   V N   +EA+  FREML+S + +PD+ T  SVI   A LGAL  
Sbjct: 167 MPARDSVSWNTVIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQ 226

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF-DTVQRNDVSVWNAMISGVA 118
             W H  +  K+IE++  LS+ALI+MYSKCG I+ A  VF ++     V  WNAM++G  
Sbjct: 227 GLWAHAYVCRKEIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNAMLAGFT 286

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
             G +  A  +FT+ME    +P+ ITF  LL ACSH G VEEG  YF+ M +  SI+P +
Sbjct: 287 ASGCSERALELFTRMESSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSSIEPDI 346

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
            HYG MVDL  RAG  E+A  +I  M MEPD  VW+AL+ ACRT+   ELG+ A   +  
Sbjct: 347 AHYGCMVDLFCRAGLFEKAEEMIQMMPMEPDAAVWKALVGACRTYSNFELGKKAGHRLIE 406

Query: 239 LMGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
               D   YVLLSN+Y     W     VR++M   GV+K  G S +EL GVIH+F +GD+
Sbjct: 407 AAPNDHAGYVLLSNIYALDGNWKGVYKVRKLMLNCGVQKVPGSSSIELDGVIHEFISGDK 466

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEE-KEGNLYHHSEKLALAYGILK 354
           SH   + + ++L  + Q+ K  G+ P T  VL+D+ +E+ KE +L  HSE+LALA+G++ 
Sbjct: 467 SHSRKRDVYEMLSEICQQLKVAGYAPDTSQVLLDIDDEDVKESSLALHSERLALAFGLIS 526

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T+PGT IRI KNLR+C DCH+ IK++S++  R I+VRD  RFHRF  G CSCGDYW
Sbjct: 527 TAPGTPIRIVKNLRVCGDCHNAIKLLSKIYGRCIMVRDANRFHRFREGSCSCGDYW 582



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 100/243 (41%), Gaps = 35/243 (14%)

Query: 10  NSMIGGFVRNARFDE--ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLI 67
           +S+   +    R +   ALR F  +L S  +PD   +A  +  CAR  A   A  +H   
Sbjct: 42  DSLAASYTARMRLNPHLALRLFDHLLRSGADPDPIAYALALARCARERAYPAAAQLHGHA 101

Query: 68  IEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA--------- 118
            ++    +  +   LI  YS CG +  A++VFD     D+  WN ++ G A         
Sbjct: 102 AKRGAASHRRVRNGLIHAYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQGRDTGALR 161

Query: 119 ----------------------IHGLAADASAIFTKMEMFN-VLPDSITFLGLLTACSHC 155
                                  +G   +A A+F +M   N   PD +T + +++A ++ 
Sbjct: 162 EFFAQMPARDSVSWNTVIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYL 221

Query: 156 GLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRA 215
           G + +G     ++  R  I+   +   A++++  + G IE A  +  +      V  W A
Sbjct: 222 GALAQGLWAHAYV-CRKEIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNA 280

Query: 216 LLS 218
           +L+
Sbjct: 281 MLA 283


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/410 (44%), Positives = 266/410 (64%), Gaps = 3/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD VSWNSMI G+ RN    E+LR FR M      PD+ TF +V+  C ++ AL +   +
Sbjct: 327 KDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSI 386

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H+ +++K  + N I+  AL+DMYSKCG +  ++ VFD +    +  W+AM++G  +HG  
Sbjct: 387 HSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRG 446

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A +I   M+  +V+PD+  F  +L+ACSH GLV EG++ F  M   Y+++P L HY  
Sbjct: 447 REAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSC 506

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
           MVDLLGRAGH++EAY +I +M ++P   +W ALL+A R  K ++L E++   + +++  +
Sbjct: 507 MVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKV 566

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
              Y+ LSN+Y   KRWD  E VR ++++KG++KS G S++EL  ++H+F  GD+SH + 
Sbjct: 567 VSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQQT 626

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + I   L  L Q+ K  G+ P T LV  DV EE KE  L+ HSE+LA+A+ ++ T PGT 
Sbjct: 627 EDIYAKLNELKQQLKEAGYKPDTSLVFYDVEEEVKEKMLWDHSERLAIAFALINTGPGTV 686

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IRI+KNLR+C DCH+  K+IS L  R II+RD  RFH F  G CSCGDYW
Sbjct: 687 IRITKNLRVCGDCHTVTKLISELTGREIIMRDIHRFHHFIKGFCSCGDYW 736



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 113/259 (43%), Gaps = 44/259 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D+ SWN+MI G+ +NA    A   F  M  + +  D  T   ++  CA L A+   
Sbjct: 222 MAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEG 281

Query: 61  YWVHNLIIEKKI-ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             +H   +   I   N   + +LI+MY  C  +  A+ +F+ V+  D   WN+MI G A 
Sbjct: 282 KVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYAR 341

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTAC--------------------------- 152
           +G A ++  +F +M +    PD +TF+ +L AC                           
Sbjct: 342 NGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIV 401

Query: 153 --------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
                   S CG +   R+ FD M  +      L  + AMV   G  G   EA  ++  M
Sbjct: 402 GTALVDMYSKCGSLACSRRVFDEMPDK-----SLVSWSAMVAGYGLHGRGREAISILDGM 456

Query: 205 ---TMEPDVVVWRALLSAC 220
              ++ PD  V+ ++LSAC
Sbjct: 457 KANSVIPDNGVFTSILSAC 475



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 114/260 (43%), Gaps = 34/260 (13%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K+   WN MI G+  N    ++L  +REML      D FT+  V+  C  L  +     V
Sbjct: 124 KNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRV 183

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H+ ++   +E +  +  +L+ MY+K G +  A+ VFD +   D++ WN MISG A +  +
Sbjct: 184 HSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADS 243

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-------RSRYSIQP 176
             A  +F  M    +  D  T LGLL+AC+    V+EG+    +         +++    
Sbjct: 244 GTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNS 303

Query: 177 QLEHY---GAMVD-------------------LLG--RAGHIEEAYGLITSMTME---PD 209
            +E Y     MVD                   +LG  R G   E+  L   M ++   PD
Sbjct: 304 LIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPD 363

Query: 210 VVVWRALLSACRTFKRLELG 229
            V + A+L AC     L  G
Sbjct: 364 QVTFIAVLGACDQIAALRYG 383



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
           HA+ +   I+E    LN  L+A     Y+ CG +  A+ +FD +   +  +WN MI G A
Sbjct: 82  HAHMISFSILENNTYLNTKLAA----FYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYA 137

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
            +GL   +  ++ +M  F    D+ T+  +L AC    LVE GR+
Sbjct: 138 SNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRR 182



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 4/123 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPDK +VSW++M+ G+  + R  EA+     M ++ V PD   F S++  C+  G +   
Sbjct: 425 MPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEG 484

Query: 61  YWVHNLIIEKKIELNFILS--AALIDMYSKCGKIQMAKEVFDTVQRNDVS-VWNAMISGV 117
             +    +EK+  +   LS  + ++D+  + G +  A  +  T++    S +W A+++  
Sbjct: 485 KEIF-YKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTAS 543

Query: 118 AIH 120
            +H
Sbjct: 544 RLH 546


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/413 (45%), Positives = 250/413 (60%), Gaps = 3/413 (0%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            MP +D+VSWN +I G+ +N     A+ F  +M    V P+KF+F S++  C+   AL   
Sbjct: 694  MPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEG 753

Query: 61   YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              VH  I+++K++ +  + AALI MY+KCG    A+EVFD +   +V  WNAMI+  A H
Sbjct: 754  KRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQH 813

Query: 121  GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            GLA+ A   F  ME   + PD  TF  +L+AC+H GLV EG + F  M S Y + P +EH
Sbjct: 814  GLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEH 873

Query: 181  YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
            YG +V LLGRA   +EA  LI  M   PD  VW  LL ACR    + L E A  N  +L 
Sbjct: 874  YGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLN 933

Query: 241  GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              +   Y+LLSN+Y    RWD    +R +M+ +G+RK  G+SW+E+  +IH+F A DRSH
Sbjct: 934  ARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSH 993

Query: 298  PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            PE   I   L  L    +  G+ P T+ VL D+ +  +E +L  HSE+LA+AYG++KT P
Sbjct: 994  PETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPP 1053

Query: 358  GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            GT IRI KNLRIC DCH+  K IS+L+ R II RD  RFH F+ G CSC DYW
Sbjct: 1054 GTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 1106



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 122/220 (55%), Gaps = 2/220 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D++SWN++I G+ R     EA+R +++M S  V+P + TF  ++  CA   A    
Sbjct: 391 MPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADG 450

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I+   I+ N  L+ AL++MY +CG +  A+ VF+  Q  DV  WN+MI+G A H
Sbjct: 451 KMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQH 510

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +M+   + PD+ITF  +L+ C +   +E G++    + +   +Q  +  
Sbjct: 511 GSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRI-TESGLQLDVNL 569

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
             A++++  R G +++A  +  S+    DV+ W A++  C
Sbjct: 570 GNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAMIGGC 608



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 155/312 (49%), Gaps = 18/312 (5%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +DV+SWNSMI G  ++  ++ A + F+EM + ++EPD  TFASV+ GC    AL     +
Sbjct: 495 RDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQI 554

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  I E  ++L+  L  ALI+MY +CG +Q A+ VF ++Q  DV  W AMI G A  G  
Sbjct: 555 HGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGED 614

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYG 182
             A  +F +M+     P   TF  +L  C+    ++EG+K   + + S Y +   + +  
Sbjct: 615 MKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGN-- 672

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
           A++    ++G + +A  +   M    D+V W  +++    + +  LG+ A+    ++   
Sbjct: 673 ALISAYSKSGSMTDAREVFDKMPSR-DIVSWNKIIAG---YAQNGLGQTAVEFAYQMQEQ 728

Query: 243 DYVLLSNMYCYLKRWDTAENVREIMKKKGV------RKSQGKSWLELAGVIHQFKAGDRS 296
           D V   N + ++   +   +   + + K V      RK QG   +  A +    K G  S
Sbjct: 729 DVV--PNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCG--S 784

Query: 297 HPEAQAI-DKIL 307
             EAQ + D I+
Sbjct: 785 QGEAQEVFDNII 796



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 124/266 (46%), Gaps = 43/266 (16%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+DVV +N++I    ++    EA   +  M S  V  ++ T+ S++  C+   AL     
Sbjct: 292 DRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKL 351

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+ I E     +  +  ALI MY++CG +  A+E+F T+ + D+  WNA+I+G A    
Sbjct: 352 IHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARRED 411

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSH---------------------------- 154
             +A  ++ +M+   V P  +TFL LL+AC++                            
Sbjct: 412 RGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANA 471

Query: 155 -------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT-- 205
                  CG + E +  F+  ++R  I      + +M+    + G  E AY L   M   
Sbjct: 472 LMNMYRRCGSLMEAQNVFEGTQARDVIS-----WNSMIAGHAQHGSYETAYKLFQEMQNE 526

Query: 206 -MEPDVVVWRALLSACRTFKRLELGE 230
            +EPD + + ++LS C+  + LELG+
Sbjct: 527 ELEPDNITFASVLSGCKNPEALELGK 552



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 111/219 (50%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DV+SWNS+I  + +     +A + F EM ++   P+K T+ S++  C     L + 
Sbjct: 88  MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENG 147

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ II+   + +  +  +L+ MY KCG +  A++VF  +   DV  +N M+   A  
Sbjct: 148 KKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQK 207

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +   +F +M    + PD +T++ LL A +   +++EG++    +     +   +  
Sbjct: 208 AYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKR-IHKLTVEEGLNSDIRV 266

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A+V +  R G ++ A       T + DVVV+ AL++A
Sbjct: 267 GTALVTMCVRCGDVDSAKQAFKG-TADRDVVVYNALIAA 304



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 110/216 (50%), Gaps = 2/216 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +DVVS+N+M+G + + A   E L  F +M S  + PDK T+ +++        L+    +
Sbjct: 192 RDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRI 251

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H L +E+ +  +  +  AL+ M  +CG +  AK+ F      DV V+NA+I+ +A HG  
Sbjct: 252 HKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHN 311

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A   + +M    V  +  T+L +L ACS    +E G+    H+ S       ++   A
Sbjct: 312 VEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHI-SEDGHSSDVQIGNA 370

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++ +  R G + +A  L  +M  + D++ W A+++ 
Sbjct: 371 LISMYARCGDLPKARELFYTMP-KRDLISWNAIIAG 405



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 103/227 (45%), Gaps = 33/227 (14%)

Query: 37  VEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAK 96
            E ++ T+ +++  C R   L  A  +H  ++E  +  +  LS  LI+MY KC  +  A 
Sbjct: 23  TETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAH 82

Query: 97  EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
           +VF  + R DV  WN++IS  A  G    A  +F +M+    +P+ IT++ +LTAC    
Sbjct: 83  QVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPA 142

Query: 157 LVEEGRKYFDH-MRSRYSIQPQLEH-----------------------------YGAMVD 186
            +E G+K     +++ Y   P++++                             Y  M+ 
Sbjct: 143 ELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLG 202

Query: 187 LLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELGE 230
           L  +  +++E  GL   M+ E   PD V +  LL A  T   L+ G+
Sbjct: 203 LYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGK 249


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/413 (46%), Positives = 254/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPD D+VSWN+MIG  V+ + F EA+  FR M S  +  DK T   V   C  LGAL+ A
Sbjct: 433 MPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLA 492

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H  I +K I  +  L  AL+DM+++CG  Q A +VF+ + + DVS W A I  +A+ 
Sbjct: 493 KWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAME 552

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +M    + PD + F+ LLTA SH GLVE+G   F  M+  Y I PQ  H
Sbjct: 553 GNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVH 612

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDLLGRAG + EA  LI SM MEP+ V+W +LL+ACR  K +++   A   IS L 
Sbjct: 613 YGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELD 672

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G +VLLSN+Y    RWD    VR  +K+KG  K  G S +E+ G I +F  GD SH
Sbjct: 673 PERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESH 732

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE   I+ +L  +  R +  G++P    VL+DV+E+EKE  L  HSEKLA+A+ ++ T  
Sbjct: 733 PEMTHIEPMLKEICCRLRDIGYVPDLTNVLLDVNEKEKEYLLSRHSEKLAIAFALISTGQ 792

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR++KNLRIC DCHS+ K++S+   R IIVRD  RFH F+ G CSCGDYW
Sbjct: 793 GMPIRVAKNLRICSDCHSFAKLVSKSYSREIIVRDNNRFHFFQQGFCSCGDYW 845



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 118/254 (46%), Gaps = 41/254 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++VVSW S+IGG+ +   + EA+  F EM+   + P+  T   VI  CA+L  L   
Sbjct: 200 MSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLG 259

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V   I E ++E+N ++  AL+DMY KCG I  A+++FD     ++ ++N ++S     
Sbjct: 260 EQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQ 319

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSH-------------------------- 154
           GLA +  A+  +M      PD IT L  ++ACS                           
Sbjct: 320 GLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVC 379

Query: 155 ---------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
                    CG  E   + FD M ++  +      + +++    R G +E A+ + ++M 
Sbjct: 380 NAIINMYMKCGKQEMACRVFDRMLNKTRVS-----WNSLIAGFVRNGDMESAWKIFSAMP 434

Query: 206 MEPDVVVWRALLSA 219
            + D+V W  ++ A
Sbjct: 435 -DSDLVSWNTMIGA 447



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 110/260 (42%), Gaps = 43/260 (16%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           ++S+I GF       +A+  FR+++     PD FTF  V+  C +  AL   + VH  I+
Sbjct: 107 FSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIV 166

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
           +   E +  +  +LI  Y +CG+I   + VFD +   +V  W ++I G A  G   +A +
Sbjct: 167 KMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVS 226

Query: 129 IFTKMEMFNVLPDSITFLGLLTACS----------------------------------- 153
           +F +M    + P+S+T +G+++AC+                                   
Sbjct: 227 LFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYM 286

Query: 154 HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME---PDV 210
            CG +++ RK FD       +   L  Y  ++    R G   E   ++  M      PD 
Sbjct: 287 KCGAIDKARKIFDE-----CVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDR 341

Query: 211 VVWRALLSACRTFKRLELGE 230
           +   + +SAC     +  G+
Sbjct: 342 ITMLSAVSACSELDDVSCGK 361



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 111/248 (44%), Gaps = 33/248 (13%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           DK++V +N+++  +VR     E L    EML     PD+ T  S +  C+ L  ++   W
Sbjct: 303 DKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKW 362

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            H  ++   +E    +  A+I+MY KCGK +MA  VFD +       WN++I+G   +G 
Sbjct: 363 CHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGD 422

Query: 123 AADASAIFTKM-------------------------EMFNVL------PDSITFLGLLTA 151
              A  IF+ M                         E+F V+       D +T +G+ +A
Sbjct: 423 MESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASA 482

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           C + G ++  +    +++ +  I   +    A+VD+  R G  + A  +   M ++ DV 
Sbjct: 483 CGYLGALDLAKWIHGYIKKK-DIHFDMHLGTALVDMFARCGDPQSAMQVFNKM-VKRDVS 540

Query: 212 VWRALLSA 219
            W A + A
Sbjct: 541 AWTAAIGA 548



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 80/207 (38%), Gaps = 49/207 (23%)

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS----VWNAMISGVAIHGLAADASAIF 130
           N I S   +  +      Q A E+F  ++ N +     +++++I G +  GL   A  +F
Sbjct: 70  NLISSCTEMGTFESLEYAQKALELF--IEDNGIMGTHYMFSSLIRGFSACGLGYKAIVVF 127

Query: 131 TKMEMFNVLPDSITFLGLLTACS-----------------------------------HC 155
            ++     +PD+ TF  +L+AC+                                    C
Sbjct: 128 RQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGEC 187

Query: 156 GLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVV 212
           G ++  R+ FD M  R  +      + +++    + G  +EA  L   M    + P+ V 
Sbjct: 188 GEIDCMRRVFDKMSERNVVS-----WTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVT 242

Query: 213 WRALLSACRTFKRLELGEVAIVNISRL 239
              ++SAC   + L+LGE     I  L
Sbjct: 243 MVGVISACAKLQDLQLGEQVCTCIGEL 269


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 176/413 (42%), Positives = 266/413 (64%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + ++D +SWNS+I G V+N  FDE L+FFR+ML +K++P  ++F+S++  CA L  L+  
Sbjct: 361 LTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLG 420

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I     + N  ++++L+DMY+KCG I+ A+++FD ++  D+  W AMI G A+H
Sbjct: 421 KQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALH 480

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A DA  +F +M+   + P+ + F+ +LTACSH GLV+E  KYF+ M   + I P +EH
Sbjct: 481 GHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEH 540

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y A+ DLLGRAG +EEAY  I  M + P   VW  LLSACR  K +++ E     I+ + 
Sbjct: 541 YAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVD 600

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y+LL+N+Y   +RW  A   R  +++ G+RK+   SW+E+   ++ F AGD SH
Sbjct: 601 PKNTGAYILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESH 660

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + I + +  L++  + EG++P T  V  DV EE+K+  +  HSE+LA+ +GI+ T  
Sbjct: 661 PCYEKIREAMEVLMELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPA 720

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IR++KNLR+C DCH+  K IS+++ R I+VRD  RFH F+ G CSCGDYW
Sbjct: 721 GTTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           ++W S+I  +  +    ++L  F  ML+S + PD   F SV+  CA L  LN    +H  
Sbjct: 74  LAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGY 133

Query: 67  IIEKKIELNFILSAALIDMYS------KCGKIQM-AKEVFDTVQRNDVSVWNAMI 114
           II   ++ +     AL++MYS      K G+ ++ A +V D +     SV  A +
Sbjct: 134 IIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTASV 188



 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/129 (20%), Positives = 64/129 (49%), Gaps = 2/129 (1%)

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           +   +++F+ +   D+  WN +I+G A +GL  +   +  +M   N+ PDS T   +L  
Sbjct: 250 VDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPL 309

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
            +    + +G++       R  +  ++    +++D+  +   + ++Y + T +T E D +
Sbjct: 310 IAENVDISKGKE-IHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLT-ERDGI 367

Query: 212 VWRALLSAC 220
            W ++++ C
Sbjct: 368 SWNSIIAGC 376


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/420 (44%), Positives = 275/420 (65%), Gaps = 10/420 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-----VEPDKFTFASVIYGCARLG 55
           MP+++V+SW+ +I G+V   ++ EAL  FREM   K     V P+KFT ++V+  C RLG
Sbjct: 153 MPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLG 212

Query: 56  ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMI 114
           AL    WVH+ I +  +E++ +L  ALIDMY+KCG ++ AK VFD +  + DV  ++AMI
Sbjct: 213 ALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMI 272

Query: 115 SGVAIHGLAADASAIFTKMEMFN-VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
             +A++GL  +   +F++M   N + P+S+TF+G+L AC H GL+ +G+ YF  M   + 
Sbjct: 273 CCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFG 332

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI 233
           I P ++HYG MVDL GR+G I+EA   I SM MEPDV++W +LLS  R    ++  E A+
Sbjct: 333 ITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGAL 392

Query: 234 ---VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQF 290
              + +  +  G YVLLSN+Y    RW   + +R  M+ KG++K  G S++E+ GV+H+F
Sbjct: 393 KRLIELDPMNSGAYVLLSNVYAKTGRWIEVKRIRHEMEVKGIKKVPGCSYVEVEGVVHEF 452

Query: 291 KAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAY 350
             GD S  E++ I  +L  ++QR +  G++  T+ VL+D+ E++KE  L +HSEKLA+A+
Sbjct: 453 VVGDESQQESERIYAMLEEIMQRLREAGYVSDTKEVLLDLEEKDKEMALSYHSEKLAIAF 512

Query: 351 GILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            ++KT PGT +RI KNLRIC DCH  +KMIS+L  R I+VRD  RFH F  G CSC D+W
Sbjct: 513 CLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFSDGSCSCRDFW 572



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 99/249 (39%), Gaps = 42/249 (16%)

Query: 9   WNSMIGGFVRNA----RFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           WN +I   V N     R      +FR M    V PD  TF  ++        L      H
Sbjct: 26  WNIIIRAIVHNVSPPQRHSPISVYFR-MRHHCVSPDFHTFPFLLPSFHNPIHLPLGQRTH 84

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             I+   ++ +  +  +L++MYS CG +  A  +FD     D+  WN++++  A  GL  
Sbjct: 85  AQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAGLIN 144

Query: 125 DASAIFTKMEMFNVL------------------------------------PDSITFLGL 148
            A  +F +M   NV+                                    P+  T   +
Sbjct: 145 HARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTV 204

Query: 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
           L+AC   G +E+G K+      +Y ++  +    A++D+  + G +E A  +  ++  + 
Sbjct: 205 LSACGRLGALEQG-KWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKK 263

Query: 209 DVVVWRALL 217
           DV  + A++
Sbjct: 264 DVKAYSAMI 272


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/414 (44%), Positives = 267/414 (64%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +K+ +SW +MI G+V+     EAL+ F EM +S VEPD  + A+ +  CA+LGAL   
Sbjct: 236 MVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQG 295

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H+ + + +I ++ +L   LIDMY+KCG +  A EVF  +QR  V  W A+ISG A H
Sbjct: 296 KWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYH 355

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A + F +M+   + P+ ITF  +LTACS+ GLVEEG+  F +M   Y+++P +EH
Sbjct: 356 GHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEH 415

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE---VAIVNIS 237
           YG +VDLL RAG ++EA   I  M ++P+ V+W ALL ACR  K +ELGE     ++ I 
Sbjct: 416 YGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAID 475

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              GG YV  +N++   K+WD A   R +MK++GV K  G S + L G  H+F AGDRSH
Sbjct: 476 PYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSH 535

Query: 298 PEAQAIDKILGSLIQRTKSEGFLP-ATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           PE + I      + ++ +  G++P   +++L  V ++E+E  ++ HSEKLA+ YG++KT 
Sbjct: 536 PEIEKIQSKWKIMRRKLEENGYVPELEDMLLDLVDDDERETIVHQHSEKLAITYGLIKTK 595

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PGT IRI KNLR+C DCH   K+IS++ +R I++RDR RFH F  G CSCGDYW
Sbjct: 596 PGTTIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 649



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 123/298 (41%), Gaps = 64/298 (21%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D   WN MI GF  +   + +L  ++ ML      + +TF S++  C+ L AL     +H
Sbjct: 108 DTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIH 167

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA------------ 112
             I +   E +     +LI+ Y+  G  ++A  +FD + + D   WN+            
Sbjct: 168 AQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMD 227

Query: 113 -------------------MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
                              MISG    G+  +A  +F +M+  +V PD+++    L+AC+
Sbjct: 228 IALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACA 287

Query: 154 HCGLVEEGR---KYFDHMRSRY--------------------------SIQPQ-LEHYGA 183
             G +E+G+    Y    R R                           +IQ + ++ + A
Sbjct: 288 QLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTA 347

Query: 184 MVDLLGRAGHIEEA---YGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           ++      GH  EA   +  +  M ++P+V+ +  +L+AC     +E G++   N+ R
Sbjct: 348 LISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMER 405



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 2/123 (1%)

Query: 95  AKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
           A+ VFD   R D  +WN MI G +       +  ++ +M   +   ++ TF  LL ACS+
Sbjct: 97  AQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSN 156

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
              +EE  +    + ++   +  +    ++++     G+ + A+ L   +  +PD V W 
Sbjct: 157 LSALEETTQIHAQI-TKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIP-KPDAVSWN 214

Query: 215 ALL 217
           +++
Sbjct: 215 SVI 217


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/414 (44%), Positives = 267/414 (64%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           M  + VVSWN MI G+ +N  + EA+  F  M+    V P++ T  SV+   +RLG L  
Sbjct: 225 MAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLEL 284

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             WVH    + KI ++ +L +AL+DMY+KCG I+ A +VF+ + +N+V  WNA+I G+A+
Sbjct: 285 GKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAM 344

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG A D     ++ME   + P  +T++ +L+ACSH GLV+EGR +F+ M +   ++P++E
Sbjct: 345 HGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIE 404

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HYG MVDLLGRAG++EEA  LI +M M+PD V+W+ALL A +  K +++G  A   ++ +
Sbjct: 405 HYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQM 464

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
           +    G YV LSNMY     WD    VR +MK   +RK  G SW+E+ GVIH+F   D S
Sbjct: 465 APHDSGAYVALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDS 524

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           H  A+ I  +L  +  +   EG +P T  VL+ + E+ KE  L++HSEK+A+A+G++ T 
Sbjct: 525 HSRAKDIHSMLEEISNKLSLEGHMPDTTQVLLKMDEKHKESVLHYHSEKIAVAFGLISTP 584

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           P T + I KNLRIC DCHS +K+IS++  R I++RDR RFH FE G CSC DYW
Sbjct: 585 PKTPLCIVKNLRICEDCHSSMKLISKMYERKIVIRDRKRFHHFEHGSCSCMDYW 638



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 125/267 (46%), Gaps = 52/267 (19%)

Query: 1   MPDKDVVSWNSMIGGFVRNA-RFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALN 58
           +P+++  +WN++I        R  +AL  F +MLS + VEP++FTF SV+  CA +  L 
Sbjct: 75  LPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLA 134

Query: 59  HAYWVHNLII-----------------------------------------------EKK 71
               VH L++                                               E+ 
Sbjct: 135 EGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERG 194

Query: 72  IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFT 131
            E N +L   ++D Y++ G ++ A+E+FD + +  V  WN MISG A +G   +A  IF 
Sbjct: 195 REFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFH 254

Query: 132 K-MEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGR 190
           + M+M +VLP+ +T + +L A S  G++E G K+      +  I+       A+VD+  +
Sbjct: 255 RMMQMGDVLPNRVTLVSVLPAISRLGVLELG-KWVHLYAEKNKIRIDDVLGSALVDMYAK 313

Query: 191 AGHIEEAYGLITSMTMEPDVVVWRALL 217
            G IE+A  +   +  + +V+ W A++
Sbjct: 314 CGSIEKAIQVFERLP-QNNVITWNAVI 339


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/413 (44%), Positives = 259/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D V+WN+MI G+V   R  EALR F EM  +     + T  S +  CA+LGAL   
Sbjct: 294 MPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERG 353

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH+    + + L+  L  ALIDMYSKCG +  A EVFD++   +V  W + +SG+A++
Sbjct: 354 KWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMN 413

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G+  D  A+F +ME   V P+ +TF+ +L  CS  GLV+EGR  FD M+S + I P LEH
Sbjct: 414 GMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEH 473

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDL GRAG +++A   I  M +EP   VW ALL+A R  K +ELG+ A   ++ I 
Sbjct: 474 YGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIE 533

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 +VLLSN+Y   + W    NVR +MK KGV+K  G S +E+ G +H+F  G ++H
Sbjct: 534 SKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTH 593

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + I+ +L  + QR + +G++  T+ VL D+ EE+KE  +  HSEKLA+A+G++    
Sbjct: 594 PRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPE 653

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             EIRI KNLR+C DCH + KMIS++  R I++RDR RFH F+ G CSC DYW
Sbjct: 654 DMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 706



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 2/145 (1%)

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           + +   A++   +  G+   A+E+FD + + D   WNAMI+G    G + +A  +F +M 
Sbjct: 267 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 326

Query: 135 MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194
                   +T +  LTAC+  G +E G+       SR  ++  +    A++D+  + G +
Sbjct: 327 HAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSR-GMRLSVTLGTALIDMYSKCGAV 385

Query: 195 EEAYGLITSMTMEPDVVVWRALLSA 219
             A  +  SM  E +V  W + +S 
Sbjct: 386 AAAMEVFDSMG-ERNVYTWTSAVSG 409


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/413 (43%), Positives = 262/413 (63%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K++V+W++MI G+ +N  FD+A+  F+ + S  V  ++    SVI  CA LGAL   
Sbjct: 211 MPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELG 270

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H+ +++  + LN IL  AL+DMY++CG I  A  VF+ +   D   W A+I+G+A+H
Sbjct: 271 ERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMH 330

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G +  +   F  M    + P  ITF  +L+ACSH GLVE G + F+ M+  + ++P+LEH
Sbjct: 331 GYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEH 390

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDLLGRAG +EEA   +  M ++P+  VW ALL ACR  K  E+GE     ++ + 
Sbjct: 391 YGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLL 450

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y   K W+    +R++MK KG++K  G S +EL G +H+F  GD SH
Sbjct: 451 PQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGDSSH 510

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE   I+++   ++ R ++ G+   T   L D+ EEEKE  L+ HSEKLA+A+G++++  
Sbjct: 511 PEMDKIERMWEEILMRIRAAGYRGNTADALFDIDEEEKESALHRHSEKLAIAFGMMRSEA 570

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IRI KNLR+C DCH+  K+IS++  R +IVRDR RFH F  GLCSC DYW
Sbjct: 571 GTPIRIVKNLRVCEDCHTATKLISKVFGRELIVRDRNRFHHFRQGLCSCMDYW 623



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 106/248 (42%), Gaps = 33/248 (13%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + ++  +N+MI G   +   D+A  F+ +     + PD  TF  ++  C +L  ++    
Sbjct: 81  NPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQ 140

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            H  II+   E +  +  +L+ MY+  G  + A  +F  +   DV  W +MI G    G 
Sbjct: 141 AHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGD 200

Query: 123 AADASAIFTKM-------------------------EMFNVL------PDSITFLGLLTA 151
              A  +F +M                         E+F VL       +    + ++++
Sbjct: 201 VESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISS 260

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           C+H G +E G +  D++  +  +   L    A+VD+  R G I++A  +   +  E D +
Sbjct: 261 CAHLGALELGERAHDYV-VKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLP-ERDTL 318

Query: 212 VWRALLSA 219
            W AL++ 
Sbjct: 319 SWTALIAG 326


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/413 (44%), Positives = 259/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D V+WN+MI G+V   R  EALR F EM  +     + T  S +  CA+LGAL   
Sbjct: 294 MPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERG 353

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH+    + + L+  L  ALIDMYSKCG +  A EVFD++   +V  W + +SG+A++
Sbjct: 354 KWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMN 413

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G+  D  A+F +ME   V P+ +TF+ +L  CS  GLV+EGR  FD M+S + I P LEH
Sbjct: 414 GMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEH 473

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDL GRAG +++A   I  M +EP   VW ALL+A R  K +ELG+ A   ++ I 
Sbjct: 474 YGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIE 533

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 +VLLSN+Y   + W    NVR +MK KGV+K  G S +E+ G +H+F  G ++H
Sbjct: 534 SKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTH 593

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + I+ +L  + QR + +G++  T+ VL D+ EE+KE  +  HSEKLA+A+G++    
Sbjct: 594 PRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPE 653

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             EIRI KNLR+C DCH + KMIS++  R I++RDR RFH F+ G CSC DYW
Sbjct: 654 DMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 706



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 2/145 (1%)

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           + +   A++   +  G+   A+E+FD + + D   WNAMI+G    G + +A  +F +M 
Sbjct: 267 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 326

Query: 135 MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194
                   +T +  LTAC+  G +E G+       SR  ++  +    A++D+  + G +
Sbjct: 327 HAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSR-GMRLSVTLGTALIDMYSKCGAV 385

Query: 195 EEAYGLITSMTMEPDVVVWRALLSA 219
             A  +  SM  E +V  W + +S 
Sbjct: 386 AAAMEVFDSMG-ERNVYTWTSAVSG 409


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/413 (44%), Positives = 259/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D V+WN+MI G+V   R  EALR F EM  +     + T  S +  CA+LGAL   
Sbjct: 287 MPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERG 346

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH+    + + L+  L  ALIDMYSKCG +  A EVFD++   +V  W + +SG+A++
Sbjct: 347 KWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMN 406

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G+  D  A+F +ME   V P+ +TF+ +L  CS  GLV+EGR  FD M+S + I P LEH
Sbjct: 407 GMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEH 466

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDL GRAG +++A   I  M +EP   VW ALL+A R  K +ELG+ A   ++ I 
Sbjct: 467 YGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIE 526

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 +VLLSN+Y   + W    NVR +MK KGV+K  G S +E+ G +H+F  G ++H
Sbjct: 527 SKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTH 586

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + I+ +L  + QR + +G++  T+ VL D+ EE+KE  +  HSEKLA+A+G++    
Sbjct: 587 PRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPE 646

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             EIRI KNLR+C DCH + KMIS++  R I++RDR RFH F+ G CSC DYW
Sbjct: 647 DMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 699



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 2/145 (1%)

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           + +   A++   +  G+   A+E+FD + + D   WNAMI+G    G + +A  +F +M 
Sbjct: 260 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 319

Query: 135 MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194
                   +T +  LTAC+  G +E G+       SR  ++  +    A++D+  + G +
Sbjct: 320 HAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSR-GMRLSVTLGTALIDMYSKCGAV 378

Query: 195 EEAYGLITSMTMEPDVVVWRALLSA 219
             A  +  SM  E +V  W + +S 
Sbjct: 379 AAAMEVFDSMG-ERNVYTWTSAVSG 402


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/413 (43%), Positives = 269/413 (65%), Gaps = 5/413 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREML--SSKVEPDKFTFASVIYGCARLGALNHA 60
           +KDVVSWNSMI  + +N    +AL  +R+ML  S  ++ +  T ++++  CA  G +   
Sbjct: 257 EKDVVSWNSMIALYAQNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTG 316

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +HN ++   +E N  +  +++DMYSKCG+++MA++ F  ++  ++  W+AMI+G  +H
Sbjct: 317 KCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMH 376

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  IF +M      P+ ITF+ +L ACSH GL+++GR +++ M+ R+ I+P +EH
Sbjct: 377 GHGQEALDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEH 436

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG MVDLLGRAG ++EAYGLI  M ++PD  +W ALLSACR  K +EL E++   +  L 
Sbjct: 437 YGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLSACRIHKNVELAEISAKRLFELD 496

Query: 241 G---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y     W   E +R ++K +G+ K  G S +EL G  H F  GD+SH
Sbjct: 497 ATNCGYYVLLSNIYAEAGMWKDVERMRVLVKTRGIEKPPGYSSVELKGRTHLFYVGDKSH 556

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I   LG L+++ +  G++P T  VL D+ EEEK   L+ HSEKLA+A+ ++ + P
Sbjct: 557 PQHKEIYSYLGKLLEKMQEAGYVPNTGSVLHDLDEEEKASALHIHSEKLAIAFALMNSVP 616

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G+ I + KNLR+C DCH+ IK+I+++ +R IIVRD  RFH F+ G CSCGDYW
Sbjct: 617 GSVIHVIKNLRVCTDCHTAIKLITKIAQREIIVRDLQRFHHFKDGSCSCGDYW 669



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 117/224 (52%), Gaps = 9/224 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS--SKVEPDKFTFASVIYGCARLGALN 58
           +P  + V   +M  G+VRN     +L  FR++++  S    D+          AR+    
Sbjct: 151 IPSPNPVIITAMASGYVRNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCG 210

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGK--IQMAKEVFDTVQRNDVSVWNAMISG 116
               +H L+++  ++ +  +   ++D Y+K G+  +  A++VFDT+++ DV  WN+MI+ 
Sbjct: 211 ITSSLHALVVKTGLDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTMEK-DVVSWNSMIAL 269

Query: 117 VAIHGLAADASAIFTKMEMF--NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI 174
            A +G++ADA  ++ KM     ++  +++T   +L AC+H G ++ G+   + +  R  +
Sbjct: 270 YAQNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQV-VRMGL 328

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
           +  +    ++VD+  + G +E A      +  E +++ W A+++
Sbjct: 329 EENVYVGTSVVDMYSKCGRVEMARKAFQKIK-EKNILSWSAMIT 371


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/412 (42%), Positives = 263/412 (63%), Gaps = 3/412 (0%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P  D V+W++MI GFVR      A+  FREM    V PD+ T  SV+  CA LGAL    
Sbjct: 189 PKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGK 248

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           WV + + +K I  +  L  ALIDM++KCG +  A ++F  +    +  W ++I+G+A+HG
Sbjct: 249 WVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHG 308

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              DA ++F +M    + PD + F+G+L+ACSH GLV++GR YF  M   +SI P++EHY
Sbjct: 309 RGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHY 368

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV---AIVNISR 238
           G MVDLL R G ++EA+  +  M  EP+ ++WR +++AC     L+LGE     ++    
Sbjct: 369 GCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELIKSEP 428

Query: 239 LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
           +   +YVLLSN+Y  L++W+    VRE+M  +G++K  G + +E+   +++F AGD+SH 
Sbjct: 429 MHESNYVLLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKSHD 488

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           + + I +++  + +  K  G++P T  VL+D+ EE+KE  LY HSEKLA+A+ +L T PG
Sbjct: 489 QYKEIYEMVDEMGREIKKAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNTPPG 548

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T IRI KNLR+C DCHS  K IS++  R I+VRDR RFH F+ GLCSC D+W
Sbjct: 549 TSIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 600



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 120/222 (54%), Gaps = 7/222 (3%)

Query: 2   PDKDVVSWNSMIGGF--VRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           P  D   +N++I  +   R+++ +  L F+R ML   V P+KFTF  V+ GCA +G+L  
Sbjct: 85  PSYDAFLFNTLIRAYSQTRDSKSNSFL-FYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRL 143

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGK--IQMAKEVFDTVQRNDVSVWNAMISGV 117
              VH  +++   E +  +   LI MY   G+   + A++VFD   + D   W+AMI+G 
Sbjct: 144 GKCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGF 203

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
              G ++ A  +F +M++  V PD IT + +L+AC+  G +E G K+ +    + +I   
Sbjct: 204 VRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELG-KWVESYVEKKNIPKS 262

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +E   A++D+  + G++++A  L   M     +V W ++++ 
Sbjct: 263 VELCNALIDMFAKCGNVDKAIKLFRQMDSR-TIVSWTSVIAG 303



 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 18/131 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  + +VSW S+I G   + R  +A+  F EM+ + + PD   F  V+  C+  G ++  
Sbjct: 289 MDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKG 348

Query: 61  YWV-----HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR-----NDVSVW 110
            +       N  I  K+E        ++D+  + G     KE F+ VQ+     N + +W
Sbjct: 349 RYYFGSMERNFSIVPKVE----HYGCMVDLLCRGG---FVKEAFEFVQKMPFEPNQI-IW 400

Query: 111 NAMISGVAIHG 121
             +I+     G
Sbjct: 401 RTIITACHATG 411


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/415 (44%), Positives = 268/415 (64%), Gaps = 6/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KD+V+WNS+I GF  N + +EAL  + EM    ++PD FT  S++  CA++GAL   
Sbjct: 182 MPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLG 241

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD-TVQRNDVSVWNAMISGVAI 119
              H  +I+  +  N   S  L+D+Y++CG+++ AK +FD  V +N VS W ++I G+A+
Sbjct: 242 KRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVS-WTSLIVGLAV 300

Query: 120 HGLAADASAIFTKMEMFN-VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +GL  +A  +F  ME    +LP  ITF+G+L ACSHCG+V+EG +YF  M   Y I+P++
Sbjct: 301 NGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRI 360

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           EH+G MVDLL RAG +++AY  I  M M+P+VV+WR LL AC      +L E+A + I +
Sbjct: 361 EHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQ 420

Query: 239 L---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L     GDYVLLSNMY   +RW   + +R+ M + GVRK  G S +E+   +H+F  GD+
Sbjct: 421 LEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDK 480

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SHP+   I   L  +  R + EG++P    V +DV EEEKE  L +HSEK+A+A+ ++ T
Sbjct: 481 SHPQNDMIYAKLKEMTDRLRLEGYVPQISNVYVDVEEEEKENALVYHSEKIAIAFMLIST 540

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
                IR+ KNL++C DCH  IK++S++  R I+VRDR RFH F+ G CSC DYW
Sbjct: 541 PERWPIRVVKNLKVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 114/214 (53%), Gaps = 3/214 (1%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNHAYWV 63
           +V  WN++I G+        A+  +REM +S  VEPD  T+  ++    ++  +     +
Sbjct: 84  NVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETI 143

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H+++I         +  +L+ +Y+ CG +  A +VFD +   D+  WN++I+G A +G  
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKP 203

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A A++T+M++  + PD  T + LL+AC+  G +  G+++  +M  +  +   L     
Sbjct: 204 EEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYM-IKVGLTRNLHSSNV 262

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           ++DL  R G +EEA  L   M ++ + V W +L+
Sbjct: 263 LLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLI 295


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/414 (46%), Positives = 262/414 (63%), Gaps = 4/414 (0%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLGALNH 59
            M +KD +SWNSMI  + ++    EAL  F  M+    V  +  T ++V+  CA  GAL  
Sbjct: 2185 MEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRA 2244

Query: 60   AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
               +H+ +I+  +E N  +  ++IDMY KCG+++MAK+ FD ++  +V  W AM++G  +
Sbjct: 2245 GKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGM 2304

Query: 120  HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            HG A +A  IF KM    V P+ ITF+ +L ACSH GLVEEG  +F+ M+ +Y I+P +E
Sbjct: 2305 HGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIE 2364

Query: 180  HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
            HYG MVDL GRAG + EAY LI  M M+PD VVW +LL ACR  K ++LGE+A   +  L
Sbjct: 2365 HYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFEL 2424

Query: 240  MG---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                 G YVLLSN+Y    RW   E +R +MK + + K  G S +EL G +H F  GD+ 
Sbjct: 2425 DPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKE 2484

Query: 297  HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
            HP  + I K L  L    +  G++P    VL DV EEEKE  L  HSEKLA+A+G++ ++
Sbjct: 2485 HPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSA 2544

Query: 357  PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            PGT I I KNLR+C DCH+ IK+IS+L+ R  +VRD  RFH F+ G+CSCGDYW
Sbjct: 2545 PGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 2598



 Score =  187 bits (475), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 91/228 (39%), Positives = 135/228 (59%), Gaps = 11/228 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P K+VVSW +MI G++RN + +EAL  F+ M +  + P+++T  S+I  C  +G L   
Sbjct: 217 IPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLG 276

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+  I+  IE+   L  ALIDMYSKCG I+ A EVF+T+ R  +  WN+MI+ + +H
Sbjct: 277 RGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVH 336

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  +F++ME  NV PD+ITF+G+L AC H   V+EG  YF  M   Y I P  EH
Sbjct: 337 GLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEH 396

Query: 181 YGAMVDLLGRAGHIEEAYGL---ITSMTMEPDV--------VVWRALL 217
           Y  M +L  R+ +++EA+     + S+   P +        V W  LL
Sbjct: 397 YECMTELYARSNNLDEAFKSTKEVGSLANSPSICFDARAKQVAWTQLL 444



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 125/267 (46%), Gaps = 52/267 (19%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE-------P-DKFTFASVIYGCA 52
            +P ++VVSW SMI G+V+N + D AL  F++ L  + E       P D     SV+  C+
Sbjct: 2076 IPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACS 2135

Query: 53   RLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA 112
            R+        VH  +++K  + +  +   L+D Y+KCG+  ++K+VFD ++  D   WN+
Sbjct: 2136 RVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNS 2195

Query: 113  MISGVAIHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSH----------------- 154
            MI+  A  GL+ +A  +F  M     V  +++T   +L AC+H                 
Sbjct: 2196 MIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKM 2255

Query: 155  ------------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196
                              CG VE  +K FD M+ +      ++ + AMV   G  G  +E
Sbjct: 2256 DLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEK-----NVKSWTAMVAGYGMHGRAKE 2310

Query: 197  AYGLITSMT---MEPDVVVWRALLSAC 220
            A  +   M    ++P+ + + ++L+AC
Sbjct: 2311 ALDIFYKMVRAGVKPNYITFVSVLAAC 2337



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 141/333 (42%), Gaps = 63/333 (18%)

Query: 5    DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
            +V SWNS+I    R     EALR F  +    + P + +F   I  C+ L  L      H
Sbjct: 1979 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSH 2038

Query: 65   NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
                    E +  +S+ALIDMYSKCG+++ A+ +FD +   +V  W +MI+G   +  A 
Sbjct: 2039 QQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQAD 2098

Query: 125  DASAIF-------TKMEMFNVLP-DSITFLGLLTACSH---------------------- 154
            +A  +F       T++E  N +P DS+  + +L+ACS                       
Sbjct: 2099 NALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGS 2158

Query: 155  -------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEA---- 197
                         CG     +K FD M  +  I      + +M+ +  ++G   EA    
Sbjct: 2159 IGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDIS-----WNSMIAVYAQSGLSGEALEVF 2213

Query: 198  YGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVL-----LSNMYC 252
            +G++  + +  + V   A+L AC     L  G+     + + M  +Y +     + +MYC
Sbjct: 2214 HGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIK-MDLEYNVCVGTSIIDMYC 2272

Query: 253  YLKRWDTAENVREIMKKKGVRKSQGKSWLELAG 285
               R + A+   + MK+K V     KSW  +  
Sbjct: 2273 KCGRVEMAKKTFDRMKEKNV-----KSWTAMVA 2300



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 111/247 (44%), Gaps = 41/247 (16%)

Query: 8   SWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLI 67
           +WN +I     N   ++AL  ++ M+   +  DKFTF  VI  C    +++    VH  +
Sbjct: 92  TWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSL 151

Query: 68  IEKKIELNFILSAALIDMYSKCG-------------------------------KIQMAK 96
           I+     +  +   LID Y KCG                                +Q A+
Sbjct: 152 IKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEAR 211

Query: 97  EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
            +FD +   +V  W AMI+G   +    +A  +F +M+  N+ P+  T + L+ AC+  G
Sbjct: 212 RIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMG 271

Query: 157 LVEEGRKYFDHMRSRYSIQPQLE---HYG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
           ++  GR   D     Y+I+  +E   + G A++D+  + G I++A  +  +M  +  +  
Sbjct: 272 ILTLGRGIHD-----YAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRK-SLPT 325

Query: 213 WRALLSA 219
           W +++++
Sbjct: 326 WNSMITS 332



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 2/163 (1%)

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
             H   +H  II   +  + +L+  LI +YS  G+I  A  +F  +Q      WN +I  
Sbjct: 40  FKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRA 99

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
             I+GL+  A  ++  M    +  D  TF  ++ AC++   ++ G+     +  +Y    
Sbjct: 100 NTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSL-IKYGFSG 158

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            +     ++D   + GH   A  +   M +  +VV W  ++S 
Sbjct: 159 DVFVQNNLIDFYFKCGHTRFALKVFEKMRVR-NVVSWTTVISG 200



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/129 (22%), Positives = 65/129 (50%), Gaps = 6/129 (4%)

Query: 93   QMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC 152
             +A   +  V +++V  WN++I+ +A  G + +A   F+ +    ++P   +F   + +C
Sbjct: 1966 NLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSC 2025

Query: 153  SH-CGLVEEGRKYFDHMRS-RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
            S  C LV  GR    H ++  +  +  L    A++D+  + G +++A  L   + +  +V
Sbjct: 2026 SALCDLV-SGR--MSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLR-NV 2081

Query: 211  VVWRALLSA 219
            V W ++++ 
Sbjct: 2082 VSWTSMITG 2090


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/417 (45%), Positives = 268/417 (64%), Gaps = 10/417 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSS-------KVEPDKFTFASVIYGCARLGA 56
           KDVV WN MI G+ ++   +EAL FFR+M+         KV P++ T  +V+  C ++GA
Sbjct: 212 KDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGA 271

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
           L    WVH+ +    I++N  +  AL+DMY KCG ++ A++VFD ++  DV  WN+MI G
Sbjct: 272 LECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMG 331

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
             IHG + +A  +F +M    V P  ITF+ +LTAC+H GLV +G + FD M+  Y ++P
Sbjct: 332 YGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEP 391

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG-EVAIVN 235
           ++EHYG MV+LLGRAG ++EAY L+ SM +EPD V+W  LL ACR    + LG E+A + 
Sbjct: 392 KVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEIL 451

Query: 236 ISRLMG--GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
           +S  +   G YVLLSNMY   + W     VR +MK  GV K  G S +E+   +H+F AG
Sbjct: 452 VSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAG 511

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           DR HP ++ I  +L  +    K   + P T+ VL D+ E+EKE +L  HSEKLALA+G++
Sbjct: 512 DRRHPRSKDIYSMLEKMNGWLKERHYTPKTDAVLHDIGEQEKEQSLEVHSEKLALAFGLI 571

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            TSPG  I+I KNLR+C DCH+ +K++S++  R II+RDR RFH FE G CSC DYW
Sbjct: 572 STSPGAAIKIVKNLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFENGSCSCRDYW 628



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 111/254 (43%), Gaps = 44/254 (17%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P+ +V  W  +I        F  AL ++ +ML+  ++P+ FT +S++  C     L+ A 
Sbjct: 82  PNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACT----LHPAR 137

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR----------------- 104
            VH+  I+  +  +  +S  L+D Y++ G +  A+++FD +                   
Sbjct: 138 AVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHG 197

Query: 105 --------------NDVSVWNAMISGVAIHGLAADASAIFTK-------MEMFNVLPDSI 143
                          DV  WN MI G A HG   +A   F K            V P+ I
Sbjct: 198 MLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEI 257

Query: 144 TFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
           T + +L++C   G +E G+    ++ +   I+  +    A+VD+  + G +E+A  +   
Sbjct: 258 TVVAVLSSCGQVGALECGKWVHSYVENN-GIKVNVRVGTALVDMYCKCGSLEDARKVFDV 316

Query: 204 MTMEPDVVVWRALL 217
           M  + DVV W +++
Sbjct: 317 MEGK-DVVAWNSMI 329



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 66/126 (52%), Gaps = 10/126 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KDVV+WNSMI G+  +   DEAL+ F EM    V+P   TF +V+  CA  G ++  
Sbjct: 317 MEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKG 376

Query: 61  YWVHNLI-----IEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMI 114
           + V + +     +E K+E        ++++  + G++Q A ++  +++   D  +W  ++
Sbjct: 377 WEVFDSMKDGYGMEPKVE----HYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLL 432

Query: 115 SGVAIH 120
               IH
Sbjct: 433 WACRIH 438


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/413 (43%), Positives = 276/413 (66%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+++ V+WN+MI G+V++   D+AL  ++ ML  +V+  + T++SV+  CA L A+   
Sbjct: 304 LPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELG 363

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+L ++   + + ++  ALIDMY+KCG I+ A+ VFD +   D   WNAMISG ++H
Sbjct: 364 TQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMH 423

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A   F  M+    +P+ +TF+ +L+ACS+ GL++ G+ YF  M   Y I+P +EH
Sbjct: 424 GLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEH 483

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MV LLGR+GH+++A  LI  + +EP+V VWRALL AC     ++LG ++   I ++ 
Sbjct: 484 YTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQID 543

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D   +VLLSN+Y   +RW++  +VR+ MK KGV+K  G SW+E  G++H F  GD SH
Sbjct: 544 PQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSH 603

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I  +L  L  +T+  G++P    VL DV ++EK+ +L+ HSE+LALA+G+++T  
Sbjct: 604 PDMKMISGMLEWLNMKTEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERLALAFGLIRTPS 663

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IRI KNLRIC DCHS IK+IS++++R II+RD  RFH F+ G+CSCGDYW
Sbjct: 664 RGHIRILKNLRICTDCHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 118/221 (53%), Gaps = 6/221 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP  DV+ W+ MI  + ++ +  EA+  F +M  + V P++FTFASV+  CA +  L   
Sbjct: 203 MPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLG 262

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF-DTVQRNDVSVWNAMISGVAI 119
             VH  +++  ++ N  +S AL+D+Y+KCG++  + ++F +   RN+V+ WN MI G   
Sbjct: 263 KQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVT-WNTMIVGYVQ 321

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            G    A +++  M    V    +T+  +L AC+    +E G +   H  S  +I  +  
Sbjct: 322 SGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQI--HSLSLKTIYDKDV 379

Query: 180 HYG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             G A++D+  + G I+ A  L+  M  E D + W A++S 
Sbjct: 380 VVGNALIDMYAKCGSIKNAR-LVFDMLSERDEISWNAMISG 419



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 107/214 (50%), Gaps = 2/214 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD+VSW  M+  +  N RF ++L+ F EM      P+ FTFA V+  C  L A +    V
Sbjct: 105 KDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSV 164

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +++   E++  +   L+D+Y+K G       VF+ + ++DV  W+ MIS  A    +
Sbjct: 165 HGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQS 224

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F +M    VLP+  TF  +L +C+    ++ G++   H+  +  +   +    A
Sbjct: 225 REAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVL-KVGLDGNVFVSNA 283

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           ++D+  + G ++ +  L   +    + V W  ++
Sbjct: 284 LMDVYAKCGRLDNSMKLFMELPNRNE-VTWNTMI 316



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 78/152 (51%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPD++ VS+ ++I G+V++ + DE +  F  +     E + F F +++     +     A
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           Y +H  I +   E N  +  ALID Y+ CG +  A++ FD +   D+  W  M++  A +
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTAC 152
               D+  +F +M M    P+  TF G+L AC
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKAC 152


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/414 (46%), Positives = 262/414 (63%), Gaps = 4/414 (0%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLGALNH 59
            M +KD +SWNSMI  + ++    EAL  F  M+    V  +  T ++V+  CA  GAL  
Sbjct: 1312 MEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRA 1371

Query: 60   AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
               +H+ +I+  +E N  +  ++IDMY KCG+++MAK+ FD ++  +V  W AM++G  +
Sbjct: 1372 GKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGM 1431

Query: 120  HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            HG A +A  IF KM    V P+ ITF+ +L ACSH GLVEEG  +F+ M+ +Y I+P +E
Sbjct: 1432 HGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIE 1491

Query: 180  HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
            HYG MVDL GRAG + EAY LI  M M+PD VVW +LL ACR  K ++LGE+A   +  L
Sbjct: 1492 HYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFEL 1551

Query: 240  MG---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                 G YVLLSN+Y    RW   E +R +MK + + K  G S +EL G +H F  GD+ 
Sbjct: 1552 DPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKE 1611

Query: 297  HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
            HP  + I K L  L    +  G++P    VL DV EEEKE  L  HSEKLA+A+G++ ++
Sbjct: 1612 HPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSA 1671

Query: 357  PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            PGT I I KNLR+C DCH+ IK+IS+L+ R  +VRD  RFH F+ G+CSCGDYW
Sbjct: 1672 PGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 1725



 Score =  187 bits (475), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 85/198 (42%), Positives = 126/198 (63%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P K+VVSW +MI G++RN + +EAL  F+ M +  + P+++T  S+I  C  +G L   
Sbjct: 217 IPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLG 276

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+  I+  IE+   L  ALIDMYSKCG I+ A EVF+T+ R  +  WN+MI+ + +H
Sbjct: 277 RGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVH 336

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  +F++ME  NV PD+ITF+G+L AC H   V+EG  YF  M   Y I P  EH
Sbjct: 337 GLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEH 396

Query: 181 YGAMVDLLGRAGHIEEAY 198
           Y  M +L  R+ +++EA+
Sbjct: 397 YECMTELYARSNNLDEAF 414



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 128/276 (46%), Gaps = 52/276 (18%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE-------P-DKFTFASVIYGCA 52
            +P ++VVSW SMI G+V+N + D AL  F++ L  + E       P D     SV+  C+
Sbjct: 1203 IPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACS 1262

Query: 53   RLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA 112
            R+        VH  +++K  + +  +   L+D Y+KCG+  ++K+VFD ++  D   WN+
Sbjct: 1263 RVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNS 1322

Query: 113  MISGVAIHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSH----------------- 154
            MI+  A  GL+ +A  +F  M     V  +++T   +L AC+H                 
Sbjct: 1323 MIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKM 1382

Query: 155  ------------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196
                              CG VE  +K FD M+ +      ++ + AMV   G  G  +E
Sbjct: 1383 DLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEK-----NVKSWTAMVAGYGMHGRAKE 1437

Query: 197  AYGLITSMT---MEPDVVVWRALLSACRTFKRLELG 229
            A  +   M    ++P+ + + ++L+AC     +E G
Sbjct: 1438 ALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEG 1473



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 141/331 (42%), Gaps = 63/331 (19%)

Query: 5    DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
            +V SWNS+I    R     EALR F  +    + P + +F   I  C+ L  L      H
Sbjct: 1106 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSH 1165

Query: 65   NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
                    E +  +S+ALIDMYSKCG+++ A+ +FD +   +V  W +MI+G   +  A 
Sbjct: 1166 QQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQAD 1225

Query: 125  DASAIF-------TKMEMFNVLP-DSITFLGLLTACSH---------------------- 154
            +A  +F       T++E  N +P DS+  + +L+ACS                       
Sbjct: 1226 NALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGS 1285

Query: 155  -------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEA---- 197
                         CG     +K FD M  +  I      + +M+ +  ++G   EA    
Sbjct: 1286 IGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDIS-----WNSMIAVYAQSGLSGEALEVF 1340

Query: 198  YGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVL-----LSNMYC 252
            +G++  + +  + V   A+L AC     L  G+     + + M  +Y +     + +MYC
Sbjct: 1341 HGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIK-MDLEYNVCVGTSIIDMYC 1399

Query: 253  YLKRWDTAENVREIMKKKGVRKSQGKSWLEL 283
               R + A+   + MK+K V     KSW  +
Sbjct: 1400 KCGRVEMAKKTFDRMKEKNV-----KSWTAM 1425



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 111/247 (44%), Gaps = 41/247 (16%)

Query: 8   SWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLI 67
           +WN +I     N   ++AL  ++ M+   +  DKFTF  VI  C    +++    VH  +
Sbjct: 92  TWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSL 151

Query: 68  IEKKIELNFILSAALIDMYSKCG-------------------------------KIQMAK 96
           I+     +  +   LID Y KCG                                +Q A+
Sbjct: 152 IKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEAR 211

Query: 97  EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
            +FD +   +V  W AMI+G   +    +A  +F +M+  N+ P+  T + L+ AC+  G
Sbjct: 212 RIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMG 271

Query: 157 LVEEGRKYFDHMRSRYSIQPQLE---HYG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
           ++  GR   D     Y+I+  +E   + G A++D+  + G I++A  +  +M  +  +  
Sbjct: 272 ILTLGRGIHD-----YAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRK-SLPT 325

Query: 213 WRALLSA 219
           W +++++
Sbjct: 326 WNSMITS 332



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 2/163 (1%)

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
             H   +H  II   +  + +L+  LI +YS  G+I  A  +F  +Q      WN +I  
Sbjct: 40  FKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRA 99

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
             I+GL+  A  ++  M    +  D  TF  ++ AC++   ++ G+     +  +Y    
Sbjct: 100 NTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSL-IKYGFSG 158

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            +     ++D   + GH   A  +   M +  +VV W  ++S 
Sbjct: 159 DVFVQNNLIDFYFKCGHTRFALKVFEKMRVR-NVVSWTTVISG 200



 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/129 (22%), Positives = 65/129 (50%), Gaps = 6/129 (4%)

Query: 93   QMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC 152
             +A   +  V +++V  WN++I+ +A  G + +A   F+ +    ++P   +F   + +C
Sbjct: 1093 NLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSC 1152

Query: 153  SH-CGLVEEGRKYFDHMRS-RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
            S  C LV  GR    H ++  +  +  L    A++D+  + G +++A  L   + +  +V
Sbjct: 1153 SALCDLV-SGR--MSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLR-NV 1208

Query: 211  VVWRALLSA 219
            V W ++++ 
Sbjct: 1209 VSWTSMITG 1217


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/413 (46%), Positives = 266/413 (64%), Gaps = 5/413 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +KDV+SWN+MIGG+   + ++EAL  F  ML S V+P+  TF  +++ CA LGAL+   W
Sbjct: 326 EKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKW 385

Query: 63  VHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           VH  I +  +   N  L  +LIDMY+KCG I+ A+ VF ++   +++ WNAM+SG A+HG
Sbjct: 386 VHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHG 445

Query: 122 LAADASAIFTKMEMFNVL-PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            A  A A+F++M    +  PD ITF+G+L+AC+  GLV+ G +YF  M   Y I P+L+H
Sbjct: 446 HAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQH 505

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG M+DLL RA   EEA  L+ +M MEPD  +W +LLSAC+   R+E GE     + +L 
Sbjct: 506 YGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLE 565

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G +VLLSN+Y    RWD    +R  +  KG++K  G + +E+ G +H+F  GD+ H
Sbjct: 566 PENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVGDKFH 625

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE   I K+L  + +  +  GF+P T  VL D+ EE KEG L  HSEKLA+++G++KT P
Sbjct: 626 PECNNIYKMLNEVDKLLEENGFVPNTSEVLYDMDEEWKEGALSQHSEKLAISFGLIKTKP 685

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IRI KNLR+C +CHS  K+IS++  R II RDR RFH F+ G CSC D W
Sbjct: 686 GTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGFCSCNDCW 738



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 145/328 (44%), Gaps = 54/328 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KDVVSWN+MI G+V++ RF+EA+  F EM  + V P+K T   V+  C    +    
Sbjct: 223 IPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELG 282

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+ + + +     N  L+ ALIDMY KCG+  +A+E+FD ++  DV  WN MI G +  
Sbjct: 283 KWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYL 342

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTAC---------------------------- 152
            L  +A A+F  M   NV P+ +TFLG+L AC                            
Sbjct: 343 SLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASL 402

Query: 153 --------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
                   + CG +E   + F  M SR      L  + AM+      GH E A  L + M
Sbjct: 403 WTSLIDMYAKCGCIEAAERVFRSMHSR-----NLASWNAMLSGFAMHGHAERALALFSEM 457

Query: 205 T----MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVL---LSNMYCYLKRW 257
                  PD + +  +LSAC     ++LG        R M  DY +   L +  C +   
Sbjct: 458 VNKGLFRPDDITFVGVLSACTQAGLVDLGHQYF----RSMIQDYGISPKLQHYGCMIDLL 513

Query: 258 DTAENVR--EIMKKKGVRKSQGKSWLEL 283
             AE     EI+ K    +  G  W  L
Sbjct: 514 ARAEKFEEAEILMKNMEMEPDGAIWGSL 541



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 109/261 (41%), Gaps = 36/261 (13%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +V  WNS+I G+  ++    +L  F  ML   V+P+  TF  +   C +  A +    +H
Sbjct: 95  NVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLH 154

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT----------------------- 101
              ++  +  N  +  ++I MY+  G++  A+ VFD                        
Sbjct: 155 AHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLD 214

Query: 102 --------VQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
                   +   DV  WNAMISG    G   +A   F +M+  NVLP+  T + +L+AC 
Sbjct: 215 DARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACG 274

Query: 154 HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVW 213
           H    E G+     +R        L+   A++D+  + G  + A  L   +  E DV+ W
Sbjct: 275 HTRSGELGKWIGSWVRDN-GFGSNLQLTNALIDMYCKCGETDIARELFDGIE-EKDVISW 332

Query: 214 RALLSACRTFKRLELGEVAIV 234
             ++     +  L L E A+ 
Sbjct: 333 NTMIGG---YSYLSLYEEALA 350



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 5/125 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKV-EPDKFTFASVIYGCARLGA--L 57
           M  +++ SWN+M+ GF  +   + AL  F EM++  +  PD  TF  V+  C + G   L
Sbjct: 426 MHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDL 485

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISG 116
            H Y+  ++I +  I         +ID+ ++  K + A+ +   ++   D ++W +++S 
Sbjct: 486 GHQYF-RSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSA 544

Query: 117 VAIHG 121
              HG
Sbjct: 545 CKAHG 549



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 78/163 (47%), Gaps = 9/163 (5%)

Query: 63  VHNLIIEKKIELNFILSAALIDM--YSKCGKIQMAKEVFDTVQ---RNDVSVWNAMISGV 117
           +H+LII+  +     + + LI     S  G +  A  +F+  Q   +++V +WN++I G 
Sbjct: 47  IHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQHHKHNVFIWNSLIRGY 106

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQP 176
           ++      +  +F++M  + V P+S TF  L  +C+      EG++   H ++      P
Sbjct: 107 SLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNP 166

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            +  + +++ +    G ++ A  L+   +   D V + AL++ 
Sbjct: 167 HV--HTSVIHMYASVGEMDFAR-LVFDKSSLRDAVSFTALITG 206


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/413 (44%), Positives = 267/413 (64%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD+V+W  MIG +     + E+L  F  M    V PDK    +V+  CA+LGA++ A
Sbjct: 162 MLSKDLVTWTVMIGAYADCNAY-ESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRA 220

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            + ++ I+     L+ IL  A+IDMY+KCG ++ A+EVFD ++  +V  W+AMI+    H
Sbjct: 221 RFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYH 280

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA  +F  M    +LP+ +TF+ LL ACSH GL+EEG ++F+ M   ++++P ++H
Sbjct: 281 GRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKH 340

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MVDLLGRAG ++EA  LI +MT+E D  +W ALL ACR   ++EL E A  ++  L 
Sbjct: 341 YTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQ 400

Query: 241 ---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    +W+     R++M ++ ++K  G +W+E+    +QF  GDRSH
Sbjct: 401 PQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIPGWTWIEVDNKTYQFSVGDRSH 460

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+++ I ++L SLI++ +  G++P T+ VL DV EE K+  LY HSEKLA+A+G++    
Sbjct: 461 PQSKEIYEMLMSLIKKLEMAGYVPDTDFVLQDVEEEVKQEMLYTHSEKLAIAFGLIAIPE 520

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRISKNLR+C DCH++ KM+S ++RR IIVRD  RFH F  G CSCGDYW
Sbjct: 521 GEPIRISKNLRVCGDCHTFSKMVSSIMRRSIIVRDANRFHHFNDGTCSCGDYW 573



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 111/217 (51%), Gaps = 5/217 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D  +W+ M+GGF +          FRE+L   V PD +T   VI  C     L     +
Sbjct: 64  RDSKTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVI 123

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H+++++  +  +  + A+L+DMY+KC  ++ A+ +F+ +   D+  W  MI   A    A
Sbjct: 124 HDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCN-A 182

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLEHYG 182
            ++  +F +M    V+PD +  + ++ AC+  G +   R   D++ R+ +S+   L    
Sbjct: 183 YESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILG--T 240

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           AM+D+  + G +E A  +   M  E +V+ W A+++A
Sbjct: 241 AMIDMYAKCGSVESAREVFDRMK-EKNVISWSAMIAA 276



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 9/175 (5%)

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
           H   VH  ++      + +++  L+  Y++   I  A  +FD +   D   W+ M+ G A
Sbjct: 18  HIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFA 77

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
             G  A   A F ++    V PD+ T   ++  C     ++ GR   D +     +    
Sbjct: 78  KAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLS--- 134

Query: 179 EHY--GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA---CRTFKRLEL 228
           +H+   ++VD+  +   +E+A  L   M +  D+V W  ++ A   C  ++ L L
Sbjct: 135 DHFVCASLVDMYAKCIVVEDAQRLFERM-LSKDLVTWTVMIGAYADCNAYESLVL 188


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/411 (44%), Positives = 264/411 (64%), Gaps = 4/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +  ++ WN+MI G+V+N   +EA+  FR M S  + PD  T  S I  CA++G+L  A W
Sbjct: 337 NPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARW 396

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +   I   +   + I++ +LID Y+KCG + MA+ VFD +   DV VW+AM+ G  +HG 
Sbjct: 397 MDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQ 456

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             ++  +F  M    V P+ +TF+GLLTAC + GLVEEG   F  MR  Y I+P+ +HY 
Sbjct: 457 GRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRD-YGIEPRHQHYA 515

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            +VDLLGRAGH++ AY  + +M +EP V VW ALLSAC+  + + LGE A   + ++   
Sbjct: 516 CVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPY 575

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             G YV LSN+Y     WD    VR +M++KG+ K  G S +E+ G +  F+AGD++HP 
Sbjct: 576 NTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPR 635

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           ++ I + +  L +R K  GF+P TE VL D++ EE E  L +HSE+LA+AYG++ T PGT
Sbjct: 636 SKEIFEEVEDLERRLKEAGFVPHTESVLHDLNYEETEETLCNHSERLAIAYGLISTPPGT 695

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            +RI+KNLR C +CH+ IK+IS+L+ R I+VRD  RFH F+ G CSCGDYW
Sbjct: 696 TLRITKNLRACDNCHAAIKLISKLVSREIVVRDACRFHHFKDGACSCGDYW 746



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 112/215 (52%), Gaps = 2/215 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+ +VSW S+I G+ +N +  EALR F EM  + V PD     SV+     +  L H   
Sbjct: 236 DRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKS 295

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  +I+  +E  F L  +L  +Y+KCG + +A+  F+ V+   +  WNAMISG   +G 
Sbjct: 296 IHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGY 355

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A +A  +F  M+  N+ PDSIT    + AC+  G +E  R + D   S    +  +    
Sbjct: 356 AEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELAR-WMDEYISMSEFRNDVIVNT 414

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           +++D   + G ++ A   +     + DVVVW A++
Sbjct: 415 SLIDTYAKCGSVDMAR-FVFDRIPDKDVVVWSAMM 448



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 116/262 (44%), Gaps = 33/262 (12%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            PD DV  WN+++  + R+  F  A+  +  M  + V PD F+F  V+  C+ L AL   
Sbjct: 133 FPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMG 192

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  I     E +  +   L+ +Y+KCG+I  A  VF  +    +  W ++ISG A +
Sbjct: 193 RRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQN 252

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKY------------FDHM 168
           G   +A  IF++M   NV PD I  + +L A +    +E G+              FD +
Sbjct: 253 GQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLL 312

Query: 169 RSRYSI------------------QPQLEHYGAMVDLLGRAGHIEEA---YGLITSMTME 207
            S  S+                   P L  + AM+    + G+ EEA   + L+ S  + 
Sbjct: 313 ISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIR 372

Query: 208 PDVVVWRALLSACRTFKRLELG 229
           PD +   + ++AC     LEL 
Sbjct: 373 PDSITVTSSIAACAQIGSLELA 394



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 89/185 (48%), Gaps = 6/185 (3%)

Query: 35  SKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQM 94
           S  +PDKF +AS+I        LN  Y     ++   ++    L A L++  S  G++  
Sbjct: 70  STFKPDKF-YASLIDDSIHKTHLNQIY---AKLLVTGLQYGGFLIAKLVNKASNIGEVSC 125

Query: 95  AKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
           A+++FD     DV +WNA++   + HG    A  ++ +M++  V PD  +F  +L ACS 
Sbjct: 126 ARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSA 185

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
              +E GR+    +  R+  +  +     +V L  + G I  A  +   + ++  +V W 
Sbjct: 186 LPALEMGRRVHGQI-FRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRL-VDRTIVSWT 243

Query: 215 ALLSA 219
           +++S 
Sbjct: 244 SIISG 248



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 1/121 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +PDKDVV W++M+ G+  + +  E++  F  M  + V P+  TF  ++  C   G +   
Sbjct: 436 IPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEG 495

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE-VFDTVQRNDVSVWNAMISGVAI 119
           + + + + +  IE      A ++D+  + G +  A   V +      VSVW A++S   I
Sbjct: 496 WDLFHRMRDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKI 555

Query: 120 H 120
           H
Sbjct: 556 H 556


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/412 (45%), Positives = 263/412 (63%), Gaps = 5/412 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDVVSWN++IGG+     + EAL  F+EML S   P+  T  SV+  CA LGA++   W+
Sbjct: 280 KDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWI 339

Query: 64  HNLIIE--KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           H  I +  K +     L  +LIDMY+KCG I+ A +VF+++    +S WNAMI G A+HG
Sbjct: 340 HVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHG 399

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
            A  A  +F++M    + PD IT +GLL+ACSH GL++ GR  F  +   Y+I P+LEHY
Sbjct: 400 RANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHY 459

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV---AIVNISR 238
           G M+DLLG AG  +EA  +I  M MEPD V+W +LL AC+    LEL E     ++ I  
Sbjct: 460 GCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEP 519

Query: 239 LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
              G YVLLSN+Y    RW+    +RE++  KG++K  G S +E+  V+H+F  GD+ HP
Sbjct: 520 ENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHP 579

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           +++ I ++L  +    +  GF+P T  VL ++ EE KEG L HHSEKLA+A+G++ T PG
Sbjct: 580 QSREIYRMLEEMDVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPG 639

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T++ + KNLR+C +CH   K+IS++ +R I+ RDR RFH F  G+CSC DYW
Sbjct: 640 TKLTVVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 691



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 118/221 (53%), Gaps = 7/221 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + ++DVVSWN+MI G+V N  ++EAL  F+EM+ + V PD+ T  SV+  CA+ G++   
Sbjct: 175 ITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELG 234

Query: 61  YWVHNLIIEKK-IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             +H L+ +      +  +  A I +YSKCG +++A  +F+ +   DV  WN +I G   
Sbjct: 235 REIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTH 294

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---KYFDHMRSRYSIQP 176
             L  +A  +F +M      P+ +T L +L AC+H G ++ GR    Y D      +   
Sbjct: 295 MNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGS 354

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
            L    +++D+  + G IE A+ +  SM M   +  W A++
Sbjct: 355 ALR--TSLIDMYAKCGDIEAAHQVFNSM-MHKSLSSWNAMI 392



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 110/246 (44%), Gaps = 32/246 (13%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + +++ WN+M+ G   ++     L  +  M+S    P+ +TF  ++  CA+         
Sbjct: 45  EPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQ 104

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQ----------------------------- 93
           +H  +++   EL+     +LI MY++ G+++                             
Sbjct: 105 IHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGD 164

Query: 94  --MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
              A++VFD +   DV  WNAMI+G   +    +A  +F +M   NV PD  T + +L+A
Sbjct: 165 VRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSA 224

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           C+  G +E GR+    +   +     L+   A + L  + G +E A GL   ++ + DVV
Sbjct: 225 CAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCK-DVV 283

Query: 212 VWRALL 217
            W  L+
Sbjct: 284 SWNTLI 289



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K + SWN+MI GF  + R + A   F  M  + +EPD  T   ++  C+  G L+  
Sbjct: 380 MMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLG 439

Query: 61  YWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             +   + +   I         +ID+    G  + A+E+   +    D  +W +++    
Sbjct: 440 RHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACK 499

Query: 119 IHG 121
           +HG
Sbjct: 500 MHG 502



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 6/127 (4%)

Query: 95  AKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
           A  VF+T Q  ++ +WN M+ G+A          ++ +M     +P++ TF  LL +C+ 
Sbjct: 36  AVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAK 95

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYG--AMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
               EEGR+    +     +  +L+ Y   +++ +  R G +E+A  +    + + DVV 
Sbjct: 96  SKTFEEGRQIHAQV---MKLGCELDRYAHTSLISMYARNGRLEDARKVF-DXSSQRDVVS 151

Query: 213 WRALLSA 219
             AL++ 
Sbjct: 152 CTALITG 158


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/413 (45%), Positives = 260/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPDKD VSW++MI G+ +  RF E L  F+EM     +PD+    SVI  C  L AL+  
Sbjct: 381 MPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQG 440

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H  I +  +++N IL   LI+MY K G ++ A EVF  ++   VS WNA+I G+A++
Sbjct: 441 KWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMN 500

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL   +   F++M+   V P+ ITF+ +L AC H GLV+EG ++F+ M   + I P ++H
Sbjct: 501 GLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKH 560

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE---VAIVNIS 237
           YG MVDLLGRAG ++EA  LI SM M PDV  W ALL AC+ +   E GE     +V + 
Sbjct: 561 YGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELH 620

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G  VLLSN+Y     W     VR +M++ GV K+ G S +E  G +H+F AGD++H
Sbjct: 621 PDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTH 680

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I+ +L  + ++ K EG+ P T  V +D+ EEEKE  L+ HSEKLA+A+G++   P
Sbjct: 681 PQNEHIEHMLDEMAKKLKLEGYAPDTREVSLDIDEEEKETTLFRHSEKLAIAFGLIAIDP 740

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T IRI KNLRIC+DCH+  K+IS+   R I+VRDR RFH F+ G CSC DYW
Sbjct: 741 PTPIRIVKNLRICNDCHTAAKLISKAFNREIVVRDRHRFHHFKQGSCSCMDYW 793



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 120/248 (48%), Gaps = 33/248 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD+VSW+++I  + +N  ++EAL  F+EM ++ +  D+    SV+  C+RL  +   
Sbjct: 249 MKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITG 308

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYS-------------------------------KC 89
             VH L+++  IE    L  ALI MYS                               KC
Sbjct: 309 KLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKC 368

Query: 90  GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
           G+I+ A+ +FD++   D   W+AMISG A      +   +F +M++    PD    + ++
Sbjct: 369 GEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVI 428

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
           +AC+H   +++G+    ++R +  ++  +     ++++  + G +E+A  +   +  E  
Sbjct: 429 SACTHLAALDQGKWIHAYIR-KNGLKINIILGTTLINMYMKLGCVEDALEVFKGLE-EKG 486

Query: 210 VVVWRALL 217
           V  W AL+
Sbjct: 487 VSTWNALI 494



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 101/214 (47%), Gaps = 12/214 (5%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIE 69
           N+M+ G+++     +A+  ++ ML S V  D +T+  +   C+   A      + + +++
Sbjct: 95  NTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLK 154

Query: 70  KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAI 129
              + +  +   LI+MY+ CG +  A++VFD     D+  WN+M++G  + G   +A  +
Sbjct: 155 VGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDV 214

Query: 130 FTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLG 189
           + +M   NV+  +     ++      G VEE  K F+ M+     Q  L  + A++    
Sbjct: 215 YDRMPERNVIASN----SMIVLFGKKGNVEEACKLFNEMK-----QKDLVSWSALISCYE 265

Query: 190 RAGHIEEAYGLITSMTMEP---DVVVWRALLSAC 220
           +    EEA  L   M       D VV  ++LSAC
Sbjct: 266 QNEMYEEALILFKEMNANGIMVDEVVVLSVLSAC 299


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/412 (44%), Positives = 264/412 (64%), Gaps = 4/412 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +KD+V W +M+ G+ +N R ++AL  F EML   +EPD +T +SV+  CA+L +L+H   
Sbjct: 284 EKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQA 343

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH   I   +  N ++S+ALIDMYSKCG I  A+ VF+ +   +V  WNAMI G A +G 
Sbjct: 344 VHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGH 403

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             DA  +F  M      PD++TF+G+L+AC HC  +E+G++YFD + +++ + P L+HY 
Sbjct: 404 DKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYA 463

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            MV+LLGR G IE+A  LI +M  +PD ++W  LLS C T   +   EVA   +  +   
Sbjct: 464 CMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPT 523

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           +   Y++LSNMY  + RW    +VR +MK K V+K  G SW+E+   +H+F + DR+HPE
Sbjct: 524 IAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPE 583

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG- 358
           ++ I + L  LI + + EGF P T LVL DV E+EK  ++  HSEKLALA+G++K   G 
Sbjct: 584 SEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGI 643

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + IRI KN+RIC+DCH ++K  SR++ R II+RD  RFH F  G CSC D W
Sbjct: 644 SPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 136/280 (48%), Gaps = 14/280 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D VS+N+ I GF  N+   E+L  F+ M     EP ++T  S++   A+L  L + 
Sbjct: 115 MPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYG 174

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  II +    N  +  AL DMY+KCG+I+ A+ +FD + + ++  WN MISG A +
Sbjct: 175 KQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKN 234

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G       +  +M +   +PD +T   ++ A   CG V+E R+ F   + +      +  
Sbjct: 235 GQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEK-----DIVC 289

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTM---EPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
           + AM+    + G  E+A  L   M +   EPD     +++S+C     L  G+ A+   S
Sbjct: 290 WTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQ-AVHGKS 348

Query: 238 RLMGGDYVLLS-----NMYCYLKRWDTAENVREIMKKKGV 272
            L G +  LL      +MY      D A +V  +M  + V
Sbjct: 349 ILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNV 388



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 2/128 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++VVSWN+MI G  +N    +AL  F  ML  K +PD  TF  ++  C     +   
Sbjct: 383 MPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQG 442

Query: 61  Y-WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN-DVSVWNAMISGVA 118
             +  ++  +  +       A ++++  + G+I+ A  +   +  + D  +W+ ++S  +
Sbjct: 443 QEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICS 502

Query: 119 IHGLAADA 126
             G   +A
Sbjct: 503 TKGDIVNA 510



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 117/287 (40%), Gaps = 46/287 (16%)

Query: 26  LRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIE-LNFILSAALID 84
           LR   ++L S+       +  ++  C R   +N A  + + +     +  +  L   L+ 
Sbjct: 7   LRQSVDLLCSRSTATSEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLH 66

Query: 85  MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSIT 144
           +Y+K GK++ A+ +FD + + D   WNA++S  A  G   +  A F +M       DS++
Sbjct: 67  LYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMP----FRDSVS 122

Query: 145 FLGLLTACSHCGLVEEGRKYFDHMR------SRYSIQPQLE--------HYG-------- 182
           +   +   S     +E  + F  M+      + Y+I   L          YG        
Sbjct: 123 YNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSII 182

Query: 183 ------------AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE 230
                       A+ D+  + G IE+A  L   +T + ++V W  ++S      + E   
Sbjct: 183 VRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLT-KKNLVSWNLMISGYAKNGQPEKC- 240

Query: 231 VAIVNISRLMG--GDYVLLSNM---YCYLKRWDTAENVREIMKKKGV 272
           + +++  RL G   D V +S +   YC   R D A  V    K+K +
Sbjct: 241 IGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDI 287


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/414 (45%), Positives = 267/414 (64%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M    +VS+N++I G+ R+++ +EAL  FRE+ +S +EP   T  SVI  CA LGAL+  
Sbjct: 191 MEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLG 250

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H  + +K  +    ++ ALIDM++KCG +  A  +F+ ++  D   W+AMI   A H
Sbjct: 251 KWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATH 310

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A ++F +M+   V PD ITFLGLL ACSH GLVE+GR YF  M   Y I P ++H
Sbjct: 311 GDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKH 370

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDLLGRAGH++EAY  +  + ++   ++WR LLSAC T   +E+ +  I  I  L 
Sbjct: 371 YGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELD 430

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              GGDYV+LSN+Y  + RW+   ++R++MK +GV K  G S +E+  V+H+F +GD  H
Sbjct: 431 DAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVH 490

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVL-MDVSEEEKEGNLYHHSEKLALAYGILKTS 356
             +  + + L  L++  K  G++P T LV   D+ EE KE  L +HSEKLA+A+G+L T 
Sbjct: 491 CVSVELRRALDELMKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTP 550

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PGT IR++KNLRIC DCH+  K+IS +  R I++RD  RFHRFE G CSCGD+W
Sbjct: 551 PGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHRFEDGKCSCGDFW 604



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 116/220 (52%), Gaps = 2/220 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           DKD++ +N M  G+ R+     A   F E+L S + PD +TF+S++  CA   AL     
Sbjct: 92  DKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMG 151

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H   ++  +  N  +   LI+MY++C  +  A+ VFD +++  +  +NA+I+G A    
Sbjct: 152 LHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQ 211

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A ++F +++  N+ P  +T L ++ +C+  G ++ G+   ++++ +      ++   
Sbjct: 212 PNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKK-GFDKYVKVNT 270

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRT 222
           A++D+  + G + +A  +   M +  D   W A++ A  T
Sbjct: 271 ALIDMFAKCGSLTDAISIFEGMRVR-DTQAWSAMIVAFAT 309



 Score = 45.4 bits (106), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 43/174 (24%)

Query: 95  AKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS- 153
           A  +FD +   D+ ++N M  G A       A ++F ++    +LPD  TF  LL AC+ 
Sbjct: 83  AHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACAS 142

Query: 154 ----------HCGLVEEG------------------------RKYFDHMRSRYSIQPQLE 179
                     HC  V+ G                        R  FD M      QP + 
Sbjct: 143 SKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEME-----QPCIV 197

Query: 180 HYGAMVDLLGRAGHIEEAYGL---ITSMTMEPDVVVWRALLSACRTFKRLELGE 230
            Y A++    R+    EA  L   + +  +EP  V   +++ +C     L+LG+
Sbjct: 198 SYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGK 251


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/412 (44%), Positives = 264/412 (64%), Gaps = 4/412 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +KD+V W +M+ G+ +N R ++AL  F EML   +EPD +T +SV+  CA+L +L+H   
Sbjct: 284 EKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQA 343

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH   I   +  N ++S+ALIDMYSKCG I  A+ VF+ +   +V  WNAMI G A +G 
Sbjct: 344 VHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGH 403

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             DA  +F  M      PD++TF+G+L+AC HC  +E+G++YFD + +++ + P L+HY 
Sbjct: 404 DKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYA 463

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            MV+LLGR G IE+A  LI +M  +PD ++W  LLS C T   +   EVA   +  +   
Sbjct: 464 CMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPT 523

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           +   Y++LSNMY  + RW    +VR +MK K V+K  G SW+E+   +H+F + DR+HPE
Sbjct: 524 IAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPE 583

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG- 358
           ++ I + L  LI + + EGF P T LVL DV E+EK  ++  HSEKLALA+G++K   G 
Sbjct: 584 SEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGI 643

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + IRI KN+RIC+DCH ++K  SR++ R II+RD  RFH F  G CSC D W
Sbjct: 644 SPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 136/280 (48%), Gaps = 14/280 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D VS+N+ I GF  N+   E+L  F+ M     EP ++T  S++   A+L  L + 
Sbjct: 115 MPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYG 174

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  II +    N  +  AL DMY+KCG+I+ A+ +FD + + ++  WN MISG A +
Sbjct: 175 KQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKN 234

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G       +  +M +   +PD +T   ++ A   CG V+E R+ F   + +      +  
Sbjct: 235 GQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEK-----DIVC 289

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTM---EPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
           + AM+    + G  E+A  L   M +   EPD     +++S+C     L  G+ A+   S
Sbjct: 290 WTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQ-AVHGKS 348

Query: 238 RLMGGDYVLLS-----NMYCYLKRWDTAENVREIMKKKGV 272
            L G +  LL      +MY      D A +V  +M  + V
Sbjct: 349 ILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNV 388



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 2/128 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++VVSWN+MI G  +N    +AL  F  ML  K +PD  TF  ++  C     +   
Sbjct: 383 MPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQG 442

Query: 61  Y-WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN-DVSVWNAMISGVA 118
             +  ++  +  +       A ++++  + G+I+ A  +   +  + D  +W+ ++S  +
Sbjct: 443 QEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICS 502

Query: 119 IHGLAADA 126
             G   +A
Sbjct: 503 TKGDIVNA 510



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 118/287 (41%), Gaps = 46/287 (16%)

Query: 26  LRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIE-LNFILSAALID 84
           LR   ++L S+       +  ++  C R   +N A  + + +     +  +  L   L+ 
Sbjct: 7   LRQSVDLLCSRSTATSEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLH 66

Query: 85  MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSIT 144
           +Y+K GK++ A+ +FD + + D+  WNA++S  A  G   +  A F +M       DS++
Sbjct: 67  LYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMP----FRDSVS 122

Query: 145 FLGLLTACSHCGLVEEGRKYFDHMR------SRYSIQPQLE--------HYG-------- 182
           +   +   S     +E  + F  M+      + Y+I   L          YG        
Sbjct: 123 YNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSII 182

Query: 183 ------------AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE 230
                       A+ D+  + G IE+A  L   +T + ++V W  ++S      + E   
Sbjct: 183 VRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLT-KKNLVSWNLMISGYAKNGQPEKC- 240

Query: 231 VAIVNISRLMG--GDYVLLSNM---YCYLKRWDTAENVREIMKKKGV 272
           + +++  RL G   D V +S +   YC   R D A  V    K+K +
Sbjct: 241 IGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDI 287


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/413 (44%), Positives = 262/413 (63%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K+ VSWN++I G+ R  + D+A   F  ML   V+P  FT++SV+  CA +G+L   
Sbjct: 179 MVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQG 238

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH L+I+   +L   +   L+DMY+K G I+ AK+VFD + + DV  WN+M++G + H
Sbjct: 239 KWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQH 298

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL   A   F +M    + P+ ITFL +LTACSH GL++EGR YFD M+ +Y+++PQ+ H
Sbjct: 299 GLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMK-KYNVEPQISH 357

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  MVDLLGRAGH++ A   I+ M ++P   VW ALL ACR  K +ELG  A   I  + 
Sbjct: 358 YVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELD 417

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G +VLL N+Y    RW+ A  VR++MK+ GV+K    SW+E+   +H F A D +H
Sbjct: 418 SHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAH 477

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I  +   +  + K  G++P +  VL+ + ++E+E  L +HSEKLALA+ +L T P
Sbjct: 478 PQRREIHNMWEQISDKIKEIGYVPDSSHVLLCMDQQEREAKLQYHSEKLALAFALLNTPP 537

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G+ IRI KN+RIC DCHS  K +S+L+ R IIVRD  RFH F  G CSC DYW
Sbjct: 538 GSTIRIKKNIRICGDCHSAFKFVSKLVEREIIVRDTNRFHHFCDGACSCEDYW 590



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 134/243 (55%), Gaps = 9/243 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALN-- 58
           M  +DVV+W ++I G+ ++ R  +AL    EML   ++P++FT AS++   + +G+ +  
Sbjct: 76  MSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVL 135

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT-VQRNDVSVWNAMISGV 117
               +H L +    + N  +S A++DMY++C  ++ A+ +FD  V +N+VS WNA+I+G 
Sbjct: 136 QGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVS-WNALIAGY 194

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           A  G    A  +F+ M   NV P   T+  +L AC+  G +E+G K+   +  ++  +  
Sbjct: 195 ARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQG-KWVHALMIKWGEKLV 253

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
                 ++D+  ++G IE+A  +   +  + DVV W ++L+    + +  LG+VA+    
Sbjct: 254 AFVGNTLLDMYAKSGSIEDAKKVFDRLA-KRDVVSWNSMLTG---YSQHGLGKVALQRFE 309

Query: 238 RLM 240
            ++
Sbjct: 310 EML 312



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 96/197 (48%), Gaps = 7/197 (3%)

Query: 46  SVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN 105
           +++  C  L  LN    +H L++  +   + ++   L+++Y+KCG +  A+++FD +   
Sbjct: 20  TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR 79

Query: 106 DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVE--EGRK 163
           DV  W A+I+G + H    DA  +  +M    + P+  T   LL A S  G  +  +GR+
Sbjct: 80  DVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQ 139

Query: 164 YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTF 223
               +  RY     +    A++D+  R  H+EEA  LI  + +  + V W AL++    +
Sbjct: 140 -LHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQ-LIFDVMVSKNEVSWNALIAG---Y 194

Query: 224 KRLELGEVAIVNISRLM 240
            R   G+ A    S ++
Sbjct: 195 ARKGQGDKAFCLFSNML 211


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/413 (45%), Positives = 266/413 (64%), Gaps = 7/413 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDV+SWN++IGG+     + EAL  F+EML S   P+  T  S++  CA LGA+    W+
Sbjct: 284 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWI 343

Query: 64  HNLIIEKKIELNFILSA---ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           H + I K+++     S+   +LIDMY+KCG I+ A++VFD++    +S WNAMI G A+H
Sbjct: 344 H-VYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMH 402

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A  A  IF++M    + PD ITF+GLL+ACSH G+++ GR  F  M+  Y I P+LEH
Sbjct: 403 GRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEH 462

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG M+DLLG +G  +EA  +I +M MEPD V+W +LL AC+    +ELGE    N+ ++ 
Sbjct: 463 YGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIE 522

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    RW+    +R ++  KG++K  G S +E+  V+H+F  GD+ H
Sbjct: 523 PKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFH 582

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + I  +L  +    +  GF+P T  VL ++ EE KEG L HHSEKLA+A+G++ T P
Sbjct: 583 PRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKP 642

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT++ I KNLR+C +CH   K+IS++ +R II RDR RFH F  G+CSC DYW
Sbjct: 643 GTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 695



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 132/288 (45%), Gaps = 39/288 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KDVVSWN+MI G+       EAL  F+EM+ + V PD+ T  SV+  CA+  ++   
Sbjct: 180 IPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELG 239

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ I +     N  +  ALID+Y KCG+++ A  +F+ +   DV  WN +I G    
Sbjct: 240 RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHM 299

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY-SIQPQLE 179
            L  +A  +F +M      P+ +T L +L AC+H G +E GR    ++  R   +     
Sbjct: 300 NLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASS 359

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSM----------------------------------T 205
           H  +++D+  + G IE A  +  S+                                   
Sbjct: 360 HRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNE 419

Query: 206 MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCY 253
           +EPD + +  LLSAC     L+LG     +I R M  DY +   +  Y
Sbjct: 420 IEPDDITFVGLLSACSHSGMLDLGR----HIFRSMKEDYKITPKLEHY 463



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 114/246 (46%), Gaps = 33/246 (13%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + +++ WN+M  G   ++    AL  +  M+S  + P+ +TF  ++  CA+  A      
Sbjct: 50  EPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQ 109

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT--------------------- 101
           +H  +++   +L+  +  +LI MY + G+++ A++VFD                      
Sbjct: 110 IHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGY 169

Query: 102 ----------VQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
                     +   DV  WNAMISG A  G   +A  +F +M   NV PD  T + +++A
Sbjct: 170 IASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSA 229

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           C+    +E GR+    +   +     L+   A++DL  + G +E A GL   ++ + DV+
Sbjct: 230 CAQSASIELGRQVHSWI-DDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYK-DVI 287

Query: 212 VWRALL 217
            W  L+
Sbjct: 288 SWNTLI 293



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++ + SWN+MI GF  + R + A   F  M  +++EPD  TF  ++  C+  G L+    
Sbjct: 386 NRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRH 445

Query: 63  VHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIH 120
           +   + E  KI         +ID+    G  + A+E+ +T++   D  +W +++    +H
Sbjct: 446 IFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMH 505

Query: 121 G 121
           G
Sbjct: 506 G 506



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 2/128 (1%)

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           +  A  VF+T+Q  ++ +WN M  G A+      A  ++  M    +LP+  TF  LL +
Sbjct: 38  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKS 97

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           C+      EG++   H+  +      L  + +++ +  + G +E+A  +    +   DVV
Sbjct: 98  CAKSKAFREGQQIHGHVL-KLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHR-DVV 155

Query: 212 VWRALLSA 219
            + AL++ 
Sbjct: 156 SYTALITG 163


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/406 (44%), Positives = 267/406 (65%), Gaps = 3/406 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D VSW +MI G++R  RF E L  FR+M  S V+PD+FT  S++  CA LGAL   
Sbjct: 332 MPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELG 391

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W    I + KI+ +  +  ALIDMY KCG ++ AK++F+ +Q+ D   W AMI G+A +
Sbjct: 392 EWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANN 451

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F+ M   +V PD IT++G++ AC+H GLV +G+ +F +M  ++ I+P L H
Sbjct: 452 GHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTH 511

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDLLGRAGH++EA  +I +M ++P+ +VW +LL ACR  K ++L E+A   I+ + 
Sbjct: 512 YGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELE 571

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              G  YVLL N+Y   K+W    NVR++M ++G++K  G S +E+ G++++F AGD+SH
Sbjct: 572 PENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKSH 631

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+++ I   L ++ Q   + G+ P T  V +DV EE+KE  LY HSEKLA+AY ++ +  
Sbjct: 632 PQSKEIYAKLENMKQDLSNAGYSPDTSEVFLDVGEEDKETALYMHSEKLAIAYALISSGK 691

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGL 403
           G  IRI KNLR+C DCH    ++S++  R +IVRD+ RFH F  GL
Sbjct: 692 GVTIRIVKNLRMCVDCHHMAMVVSKVYNRELIVRDKTRFHHFRHGL 737



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 120/250 (48%), Gaps = 42/250 (16%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREM--LSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +VV+WN ++ G+ R  R++E+ R F EM      V P+  T   ++  C++L  L     
Sbjct: 201 EVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKC 260

Query: 63  VHNLIIEKKI-ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA--- 118
           ++N  I++ I E N IL  ALIDM++ CG++  A+ VFD ++  DV  W ++++G A   
Sbjct: 261 IYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTC 320

Query: 119 -----------------------IHGLA-----ADASAIFTKMEMFNVLPDSITFLGLLT 150
                                  I G        +   +F  M+M NV PD  T + +LT
Sbjct: 321 RIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILT 380

Query: 151 ACSHCGLVEEG---RKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME 207
           AC+H G +E G   + Y D    +  I+       A++D+  + G++E+A  +   M  +
Sbjct: 381 ACAHLGALELGEWAKTYID----KNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQ-K 435

Query: 208 PDVVVWRALL 217
            D   W A++
Sbjct: 436 KDKFTWTAMI 445



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 113/232 (48%), Gaps = 4/232 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P   V  WN+MI G+ R    +  +  ++ ML   ++PD FTF  ++ G  +  AL + 
Sbjct: 95  IPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYG 154

Query: 61  YWVHN-LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             + N  +I   ++ N  +    I ++S CG +  A+++FD     +V  WN ++SG   
Sbjct: 155 KVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNR 214

Query: 120 HGLAADASAIFTKME--MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
                ++  +F +ME     V P+S+T + +L+ACS    +  G+  ++       ++P 
Sbjct: 215 FKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPN 274

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG 229
           L    A++D+    G ++ A G+   M    DV+ W ++++      R++L 
Sbjct: 275 LILENALIDMFASCGEMDAARGVFDEMKTR-DVISWTSIVTGFANTCRIDLA 325



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 77/184 (41%), Gaps = 6/184 (3%)

Query: 46  SVIYGCARLGALNHAYWVHNLIIEKKIELN--FILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           S++  C  +  +N    +H+  I+  +  N  F+    +     + G +  A++VFD + 
Sbjct: 40  SLLETCNTMYEINQ---IHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIP 96

Query: 104 RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
           +  V +WN MI G +    +    +++  M + N+ PD  TF  LL   +    ++ G+ 
Sbjct: 97  QPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKV 156

Query: 164 YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTF 223
             +H      +   L      + L    G +  A   I  M    +VV W  +LS    F
Sbjct: 157 LLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARK-IFDMGDGWEVVTWNVVLSGYNRF 215

Query: 224 KRLE 227
           KR E
Sbjct: 216 KRYE 219


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/413 (43%), Positives = 262/413 (63%), Gaps = 3/413 (0%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            +P  D V+W +MI G V N + + AL  + +M  SKV+PD++TFA+++  C+ L AL   
Sbjct: 1199 IPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQG 1258

Query: 61   YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              +H  I++     +  +  +L+DMY+KCG I+ A+ +F       ++ WNAMI G+A H
Sbjct: 1259 RQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQH 1318

Query: 121  GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            G A +A   F  M+   V+PD +TF+G+L+ACSH GLV E  + F  M+  Y I+P++EH
Sbjct: 1319 GNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEH 1378

Query: 181  YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
            Y  +VD L RAG IEEA  +I+SM  E    ++R LL+ACR     E G+     +  L 
Sbjct: 1379 YSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALE 1438

Query: 241  GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              D   YVLLSN+Y    +W+   + R +M+K  V+K  G SW++L   +H F AGDRSH
Sbjct: 1439 PSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSH 1498

Query: 298  PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
             E   I   +  +++R + EG++P T+  L+DV EE+KE +LY+HSEKLA+AYG++KT P
Sbjct: 1499 EETDVIYNKVEYIMKRIREEGYVPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPP 1558

Query: 358  GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             T +R+ KNLR+C DCHS IK IS++ +R I++RD  RFH F  G+CSCGDYW
Sbjct: 1559 STTLRVIKNLRVCGDCHSAIKYISKVFKREIVLRDANRFHHFRNGICSCGDYW 1611



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 110/214 (51%), Gaps = 4/214 (1%)

Query: 5    DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
            D+ SWN+++ G++ +  F +ALR +  M  S    D+ T  +       L  L     +H
Sbjct: 1102 DLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIH 1161

Query: 65   NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             +++++   L+  +++ ++DMY KCG+++ A+ VF  +   D   W  MISG   +G   
Sbjct: 1162 AVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEE 1221

Query: 125  DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLEHYGA 183
             A   + +M +  V PD  TF  L+ ACS    +E+GR+ + + ++   +  P +    +
Sbjct: 1222 HALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFV--MTS 1279

Query: 184  MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
            +VD+  + G+IE+A GL    T    +  W A++
Sbjct: 1280 LVDMYAKCGNIEDARGLF-KRTNTRRIASWNAMI 1312



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 3/221 (1%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARL-GALNH 59
            M + D++SWN+MI G   +   + ++  F  +L   + PD+FT ASV+  C+ L G    
Sbjct: 996  MNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYL 1055

Query: 60   AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
            A  +H   ++  + L+  +S ALID+YSK GK++ A+ +F      D++ WNA++ G  +
Sbjct: 1056 ATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIV 1115

Query: 120  HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
             G    A  ++  M+      D IT +    A      +++G++    +  R      L 
Sbjct: 1116 SGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKR-GFNLDLF 1174

Query: 180  HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
                ++D+  + G +E A  + + +   PD V W  ++S C
Sbjct: 1175 VTSGVLDMYLKCGEMESARRVFSEIP-SPDDVAWTTMISGC 1214



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 103/217 (47%), Gaps = 9/217 (4%)

Query: 5    DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
            DV+ WN  +  F++     EA+  F +M++S+V  D  TF  ++   A L  L     +H
Sbjct: 899  DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIH 958

Query: 65   NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             +++   ++    +   LI+MY K G +  A+ VF  +   D+  WN MISG  + GL  
Sbjct: 959  GIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEE 1018

Query: 125  DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ--LEHY- 181
             +  +F  +   ++LPD  T   +L ACS      EG  Y        +++    L+ + 
Sbjct: 1019 CSVGMFVHLLRDSLLPDQFTVASVLRACSSL----EGGYYLATQIHACAMKAGVVLDSFV 1074

Query: 182  -GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              A++D+  + G +EEA  L  +     D+  W A++
Sbjct: 1075 STALIDVYSKRGKMEEAEFLFVNQD-GFDLASWNAIM 1110



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 74/150 (49%), Gaps = 3/150 (2%)

Query: 2   PD--KDVVSWNSMIGGFVRNA-RFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALN 58
           PD  +D+V+WN+++     +A +  +    FR +  S V   + T A V   C    + +
Sbjct: 718 PDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPS 777

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
            +  +H   ++  ++ +  ++ AL+++Y+K G I+ A+ +FD +   DV +WN M+    
Sbjct: 778 ASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYV 837

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGL 148
              L  +A  +F++       PD +T   L
Sbjct: 838 DTCLEYEAMLLFSEFHRTGFRPDDVTLRTL 867



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 89/227 (39%), Gaps = 30/227 (13%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            M  +DVV WN M+  +V      EA+  F E   +   PD  T          L  L+  
Sbjct: 821  MAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVT----------LRTLSRV 870

Query: 61   YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                  I+E K    F   A  + MY   G              +DV VWN  +S     
Sbjct: 871  VKCKKNILELK---QFKAYATKLFMYDDDG--------------SDVIVWNKALSRFLQR 913

Query: 121  GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            G A +A   F  M    V  D +TF+ +LT  +    +E G++    +  R  +   +  
Sbjct: 914  GEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQ-IHGIVMRSGLDQVVSV 972

Query: 181  YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
               ++++  +AG +  A  +   M  E D++ W  ++S C T   LE
Sbjct: 973  GNCLINMYVKAGSVSRARSVFGQMN-EVDLISWNTMISGC-TLSGLE 1017



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 13/145 (8%)

Query: 82  LIDMYSKCGKIQMAKEVFDTV--QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVL 139
           LI MY+KCG +  A+++FDT      D+  WNA++S +A H   AD S       +F +L
Sbjct: 697 LITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAH---ADKS--HDGFHLFRLL 751

Query: 140 PDSI---TFLGLLTACSHCGL--VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194
             S+   T   L      C L       +       +  +Q  +   GA+V++  + G I
Sbjct: 752 RRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLI 811

Query: 195 EEAYGLITSMTMEPDVVVWRALLSA 219
            EA  L   M +  DVV+W  ++ A
Sbjct: 812 REARVLFDGMAVR-DVVLWNVMMKA 835


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/415 (44%), Positives = 267/415 (64%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNH 59
           MP++D+ +WN++I  + +  +  EAL  F E+ LS   +PD+ T  S +  CA+LGA++ 
Sbjct: 329 MPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDL 388

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             W+H  I ++ ++LN  L+ +LIDMY KCG +Q A  VF +V+R DV VW+AMI+G+A+
Sbjct: 389 GGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAM 448

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   DA A+F+KM+   V P+++TF  +L ACSH GLVEEGR +F+ M   Y + P ++
Sbjct: 449 HGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVK 508

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY  MVD+LGRAG +EEA  LI  M M P   VW ALL AC   + + L E A   +  L
Sbjct: 509 HYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIEL 568

Query: 240 MGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
             G+   YVLLSN+Y    +WD    +R++M+  G++K  G S +E+ G++H+F  GD S
Sbjct: 569 EPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNS 628

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEE-KEGNLYHHSEKLALAYGILKT 355
           HP A+ I   L  ++ R ++ G++P    +L  V EE+ KE  L+ HSEKLA+A+G++ T
Sbjct: 629 HPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLIST 688

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
                IRI KNLR+C DCHS  K++S+L  R I++RDR RFH F  G CSC DYW
Sbjct: 689 GQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 743



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 122/251 (48%), Gaps = 34/251 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P +DVVSWNSMI  FV+    +EAL  F+EM +  V+P+  T   V+  CA+       
Sbjct: 197 IPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFG 256

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH+ I   +I  +  LS A++DMY+KCG ++ AK +FD +   D+  W  M+ G A  
Sbjct: 257 RWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKI 316

Query: 121 GLAADASAIFTKM-------------------------EMFNVL-------PDSITFLGL 148
           G    A  IF  M                         E+F+ L       PD +T +  
Sbjct: 317 GEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVST 376

Query: 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
           L+AC+  G ++ G     +++ +  ++       +++D+  + G +++A  +  S+  + 
Sbjct: 377 LSACAQLGAMDLGGWIHVYIK-KQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERK- 434

Query: 209 DVVVWRALLSA 219
           DV VW A+++ 
Sbjct: 435 DVFVWSAMIAG 445



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 112/218 (51%), Gaps = 3/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE-PDKFTFASVIYGCARLGALNH 59
           +P  ++ +WN++I  +  ++   ++L  F  ML    + PDKFTF  +I   + L  L  
Sbjct: 95  IPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFT 154

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
               H ++I+  +  +  +  +LI  Y+KCG++ +   VF  + R DV  WN+MI+    
Sbjct: 155 GKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQ 214

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            G   +A  +F +ME  NV P+ IT +G+L+AC+     E GR    ++  R  I   L 
Sbjct: 215 GGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIE-RNRIGESLT 273

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              AM+D+  + G +E+A  L   M  E D+V W  +L
Sbjct: 274 LSNAMLDMYTKCGSVEDAKRLFDKMP-EKDIVSWTTML 310


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/412 (45%), Positives = 262/412 (63%), Gaps = 5/412 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDV+SWN +IGG+     + EAL  F+EML S   P+  T  S+++ CA LGA++   W+
Sbjct: 259 KDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWI 318

Query: 64  HNLIIE--KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           H  I +  K +     L  +LIDMYSKCG I+ A +VF+++    +  WNAMI G A+HG
Sbjct: 319 HVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHG 378

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
            A  A  IF++M    + PD ITF+GLL+ACSH G+++ GR  F  M   Y I P+LEHY
Sbjct: 379 RANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHY 438

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL-- 239
           G M+DLLG +G  +EA  +I++MTMEPD V+W +LL AC+    +ELGE    N+ ++  
Sbjct: 439 GCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEP 498

Query: 240 -MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
              G YVLLSN+Y    RW+    +R ++  KG++K  G S +E+  V+H+F  GD+ HP
Sbjct: 499 NNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHP 558

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
             + I  +L  +    +  GF+P T  VL ++ EE KEG L HHSEKLA+A+G++ T P 
Sbjct: 559 RNREIYGMLEEMEVLLQEAGFVPDTSEVLQEMEEEFKEGALRHHSEKLAIAFGLISTKPE 618

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T++ I KNLR+C +CH   K+IS++ +R II RDR RFH F  G+CSC DYW
Sbjct: 619 TKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 670



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 115/220 (52%), Gaps = 6/220 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KDVVSWN+MI G+V    + EAL  F+EM+ + V PD+ T  +VI   AR G++   
Sbjct: 155 IPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELG 214

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ I +     N  +  ALID YSKCG+++ A  +F  +   DV  WN +I G    
Sbjct: 215 RQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHL 274

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---KYFDHMRSRYSIQPQ 177
            L  +A  +F +M      P+ +T L +L AC+H G ++ GR    Y D      +    
Sbjct: 275 NLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASS 334

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           L    +++D+  + G IE A+ +  SM +   +  W A++
Sbjct: 335 LR--TSLIDMYSKCGDIEAAHQVFNSM-LHKSLPAWNAMI 371



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 112/246 (45%), Gaps = 33/246 (13%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + +++ WN+M  G   +     AL+ +  M+S  + P+ +TF  ++  CA+L A      
Sbjct: 25  EPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLKASKEGLQ 84

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKC-------------------------------GK 91
           +H  +++   EL+  +  +LI MY +                                G 
Sbjct: 85  IHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTGYASRGY 144

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           I+ A+ +FD +   DV  WNAMISG    G   +A  +F +M   NV PD  T + +++A
Sbjct: 145 IESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISA 204

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
            +  G +E GR+    + + +     L+   A++D   + G +E A GL   ++ + DV+
Sbjct: 205 SARSGSIELGRQVHSWI-ADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYK-DVI 262

Query: 212 VWRALL 217
            W  L+
Sbjct: 263 SWNILI 268



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 10/127 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALN-- 58
           M  K + +WN+MI GF  + R + A   F  M  ++++PD  TF  ++  C+  G L+  
Sbjct: 359 MLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLG 418

Query: 59  -HAY--WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMI 114
            H +    HN  I  K+E        +ID+    G  + A+E+  T+    D  +W +++
Sbjct: 419 RHIFRSMTHNYKITPKLE----HYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLL 474

Query: 115 SGVAIHG 121
               +HG
Sbjct: 475 KACKMHG 481



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 65/158 (41%), Gaps = 31/158 (19%)

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           +  A  VF+T+Q  ++ +WN M  G A+      A  ++  M    +LP+S TF  LL +
Sbjct: 13  LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKS 72

Query: 152 CSHCGLVEEGRKYFDH---------------MRSRYSIQPQLE---------------HY 181
           C+     +EG +   H               + S Y    +LE                Y
Sbjct: 73  CAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSY 132

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            A+V      G+IE A  +   + ++ DVV W A++S 
Sbjct: 133 TALVTGYASRGYIESARNMFDEIPVK-DVVSWNAMISG 169


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/413 (44%), Positives = 259/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +KD+V+W++MI G+  N+   E + FF +ML   ++PD+F+    +  CA LGAL+  
Sbjct: 273 MGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLG 332

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W  +LI   +   N  ++ ALIDMY+KCG +    EVF  ++  D+ + NA ISG+A +
Sbjct: 333 EWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKN 392

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    + A+F + E   + PD  TFLGLL  C H GL+++G ++F+ +   Y+++  +EH
Sbjct: 393 GHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEH 452

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDL GRAG +++AY LI  M M P+ +VW ALLS CR  K  +L E  +  +  L 
Sbjct: 453 YGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALE 512

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G+YV LSN+Y    RWD A  VR++M +KG++K  G SW+EL G +H+F A D+SH
Sbjct: 513 PWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSWIELEGTVHEFLADDKSH 572

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P +  I   L  L    +  GF+P TE V  DV +EEKE  L HHSEKLA+A+G++ T  
Sbjct: 573 PLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEDEEKERVLGHHSEKLAVAFGLISTDH 632

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH  +K+IS++ RR I+VRD  RFH F  G CSC DYW
Sbjct: 633 GQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 114/219 (52%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P++ VV+W ++  G+    +  EA+  F++M+   V PD +    V+  C  +G L+  
Sbjct: 172 IPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSG 231

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+   + E +++ N  +   L+++Y+KCGK++ A+ VFD++   D+  W+ MI G A +
Sbjct: 232 EWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASN 291

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +    F +M   N+ PD  + +G L++C+  G ++ G ++   +  R+     L  
Sbjct: 292 SFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLG-EWGISLIDRHEFLTNLFM 350

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++D+  + G +   + +   M  E D+V+  A +S 
Sbjct: 351 ANALIDMYAKCGAMARGFEVFKEMK-EKDIVIMNAAISG 388



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 99/215 (46%), Gaps = 2/215 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           ++  +N++I GFV N  F E L  F  +    +    FTF  V+  C R         +H
Sbjct: 75  NIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLH 134

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
           +L+++     +     +L+ +YS  G++  A +VF+ +    V  W A+ SG    G   
Sbjct: 135 SLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHR 194

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           +A  +F KM    V PDS   + +L+AC H G ++ G     HM     +Q        +
Sbjct: 195 EAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHME-EMEMQKNSFVRTTL 253

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           V+L  + G +E+A  +  SM  E D+V W  ++  
Sbjct: 254 VNLYAKCGKMEKARSVFDSMG-EKDIVTWSTMIQG 287


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/413 (44%), Positives = 269/413 (65%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++ +SWN MI G+ +N +  EAL  FREM     EP+     SV+  C++LGAL+H 
Sbjct: 184 MTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQLGALDHG 243

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH  I +K + ++ ILSAALIDMY+KCG I +A + F T ++ DVS + A ISG+A++
Sbjct: 244 CWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMN 303

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G + +A  +F +M+   + PD ++++ +L ACSH G VE+G  YF  M   + I+P+L+H
Sbjct: 304 GCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDH 363

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  MVDLLGRAG +EEA   + SM ++PD V+W ALL ACR +   E+G+     +V   
Sbjct: 364 YACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVGSLLVESD 423

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
           +   G Y+LLSN+Y    + + AE VR+ M+++ V +  G S +E+AG +H+F +GDRSH
Sbjct: 424 QNHDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGFVHEFFSGDRSH 483

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            + + I  +   +++  K  G+   T  V+ DV EEEKE  + HHSEKLA+A+G L T  
Sbjct: 484 EKTEEIYLMWEEIVKEIKKFGYREETRAVVFDVEEEEKEAVIGHHSEKLAVAFGFLYTKS 543

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G+ +RI KN+RIC DCH  IK++S++ +R I +RDR  FH FE GLCSC DYW
Sbjct: 544 GSTLRIVKNIRICSDCHYAIKLVSKVFKRKIAIRDRKCFHHFEEGLCSCKDYW 596



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 119/309 (38%), Gaps = 79/309 (25%)

Query: 6   VVSWNSMIGGFVRNARFDEALR---FFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           V  +N+ I GF R  R    L     F  M    + P+ FTF  +  GC+   A +    
Sbjct: 54  VFLFNTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQ 113

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD---------------------- 100
            H ++I+   E++  +  ++I  YS CG++  A+ VFD                      
Sbjct: 114 FHGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGN 173

Query: 101 ----------TVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150
                       +RND+S WN MISG A +G   +A A+F +M+M +  P+S   + +L+
Sbjct: 174 ILEALSLFSKMTERNDIS-WNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLS 232

Query: 151 ACSH-----------------------------------CGLVEEGRKYFDHMRSRYSIQ 175
           ACS                                    CG ++   + F   R R    
Sbjct: 233 ACSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKR---- 288

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELGEVA 232
             +  Y A +  L   G  EEA  L   M  E   PD V + A+L AC     +E G   
Sbjct: 289 -DVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHY 347

Query: 233 IVNISRLMG 241
             ++S + G
Sbjct: 348 FASMSDVHG 356


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/413 (45%), Positives = 265/413 (64%), Gaps = 7/413 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDVVSWN++IGG+     + EAL  F+EML S   P+  T  SV+  CA LGA++   W+
Sbjct: 264 KDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWI 323

Query: 64  HNLIIEKKIE---LNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           H + I+KK++       L  +LIDMY+KCG I+ A +VF+++    +S WNAMI G A+H
Sbjct: 324 H-VYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMH 382

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A  A  +F++M    V PD ITF+GLL+ACSH GL++ GR+ F  M   Y++ P+LEH
Sbjct: 383 GRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEH 442

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV---AIVNIS 237
           YG M+DLLG +G  +EA  +I +M MEPD V+W +LL AC+    LEL E     ++ I 
Sbjct: 443 YGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIE 502

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    RW+    VR ++  KG++K  G S +E+  V+H+F  GD+ H
Sbjct: 503 PENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLH 562

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + I  +L  +  + +  GF P T  VL ++ EE KEG L HHSEKLA+A+G++ T P
Sbjct: 563 PRRREIYHMLEEMDVQLEEAGFAPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKP 622

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT++ I KNLR+C +CH   K+IS++ +R I+ RDR RFH F  G+CSC DYW
Sbjct: 623 GTKLTIVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 675



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 139/294 (47%), Gaps = 47/294 (15%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + ++DVVSWN+MI G+V N R++EAL  F+EM+ + V PD+ T  SV+  CA+ G++   
Sbjct: 156 ITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELG 215

Query: 61  YWVHNLIIEKKIELNFILS----AALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
             VH+ + +   +  F  S     ALID+YSKCG ++ A  +F+ +   DV  WN +I G
Sbjct: 216 RQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGG 275

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---KYFDHMRSRYS 173
                L  +A  +F +M      P+ +T L +L AC+H G ++ GR    Y D      +
Sbjct: 276 YTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVT 335

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT---------------------------- 205
            +  L    +++D+  + G IE A+ +  SM                             
Sbjct: 336 NETSLR--TSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFS 393

Query: 206 ------MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCY 253
                 +EPD + +  LLSAC     L+LG      I + M  DY L   +  Y
Sbjct: 394 RMRGNRVEPDDITFVGLLSACSHSGLLDLGR----QIFKSMTQDYNLTPKLEHY 443



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 117/251 (46%), Gaps = 35/251 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + + +++ WN+M+ G   ++    AL  +  M+S    P+ ++F  ++  CA+  A    
Sbjct: 24  IQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKAFEEG 83

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQ--------------------------- 93
             +H  +++    L+  +  +LI MY++ G ++                           
Sbjct: 84  RQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITGYASR 143

Query: 94  ----MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
                A++VFD +   DV  WNAMI+G   +G   +A  +F +M   NV PD  T + ++
Sbjct: 144 GDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVV 203

Query: 150 TACSHCGLVEEGRK---YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM 206
           +AC+  G +E GR+   + D     +     L+   A++DL  + G +E A+GL   ++ 
Sbjct: 204 SACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSC 263

Query: 207 EPDVVVWRALL 217
           + DVV W  L+
Sbjct: 264 K-DVVSWNTLI 273



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 22/196 (11%)

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           +  A  VF+T+Q  ++ +WN M+ G A       A  ++ +M     LP+S +F  LL +
Sbjct: 14  LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKS 73

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHY--GAMVDLLGRAGHIEEAYGLITSMTMEPD 209
           C+     EEGR+    +     +   L+ Y   +++ +  R G +E+A  +  + +   D
Sbjct: 74  CAKSKAFEEGRQIHAQV---LKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHR-D 129

Query: 210 VVVWRALLSA------CRTFKRL--ELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAE 261
           VV   AL++        R+ +++  E+ E  +V+ + ++ G        Y    R++ A 
Sbjct: 130 VVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITG--------YVENGRYEEAL 181

Query: 262 NVREIMKKKGVRKSQG 277
            + + M +  VR  +G
Sbjct: 182 ELFKEMMRTNVRPDEG 197


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/407 (46%), Positives = 264/407 (64%), Gaps = 7/407 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDV+SWN++IGG+       EAL  F+EML     P+  T  S++  CA LGA++   W+
Sbjct: 274 KDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWI 333

Query: 64  HNLIIEKKIE---LNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           H + I+KK++    N  L  +LIDMY+KCG I+ A +VFDT+    +S  NAMI G A+H
Sbjct: 334 H-VYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMH 392

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A  A  + ++M+   + PD ITF+GLL+ACSH GL + GRK F  M   Y I+P+LEH
Sbjct: 393 GRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEH 452

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV---AIVNIS 237
           YG M+DLLGR+G  +EA  LI SMTMEPD V+W +LL AC+  K LELGE+    ++ I 
Sbjct: 453 YGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIE 512

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    RWD    VR ++  KG++K  G S +E+  ++H+F  GD+ H
Sbjct: 513 PKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFH 572

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I K+L  +       GF+  T  VL ++ EE KEG L +HSEKLA+A+G++ T P
Sbjct: 573 PQNKEIYKMLEEIDSLLAETGFVSDTSEVLQEMEEELKEGALSYHSEKLAIAFGLISTKP 632

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLC 404
           GT++RI KNLR+C +CH   K+IS++ +R II RDR RFH F+ G+C
Sbjct: 633 GTKLRIVKNLRVCRNCHEATKLISKIYKREIIARDRSRFHHFKDGMC 679



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 125/266 (46%), Gaps = 39/266 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KDVVSWN+MI G+    R+ EAL  F EM+   V+PD+ T A+V+  C   G +   
Sbjct: 170 IPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELG 229

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ I       N  L  ALID+YSKCG+++ A  +F+ +Q  DV  WN +I G A  
Sbjct: 230 RQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYI 289

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---KYFDHMRSRYSIQPQ 177
               +A  +F +M      P+ +T L +L AC+H G ++ GR    Y D           
Sbjct: 290 NHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTS 349

Query: 178 LEHYGAMVDLLGRAGHIE-------------------------------EAYGLITSMT- 205
           L+   +++D+  + G+IE                                A+ L++ M  
Sbjct: 350 LQ--TSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKK 407

Query: 206 --MEPDVVVWRALLSACRTFKRLELG 229
             +EPD + +  LLSAC      +LG
Sbjct: 408 DGIEPDDITFVGLLSACSHAGLSDLG 433



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 114/246 (46%), Gaps = 33/246 (13%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + + +SWN+MI G   ++    AL  +  M+S  + P+ +TF  +   CA+  A      
Sbjct: 40  EPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQ 99

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT--------------------- 101
           +H  I++  + ++  +  +LI MY++ G ++ A +VFDT                     
Sbjct: 100 IHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGN 159

Query: 102 ----------VQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
                     +   DV  WNAMISG A  G   +A  +F +M   +V PD  T   +L+ 
Sbjct: 160 MDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLST 219

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           C+H G VE GR+    +   +     L+   A++DL  + G +E A+GL   +  + DV+
Sbjct: 220 CTHSGNVELGRQIHSWI-DNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYK-DVI 277

Query: 212 VWRALL 217
            W  L+
Sbjct: 278 SWNTLI 283



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K + S N+MI GF  + R D A      M    +EPD  TF  ++  C+  G  +    
Sbjct: 376 NKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRK 435

Query: 63  V-HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIH 120
           +  ++ ++ +IE        +ID+  + G  + A+E+ +++    D  +W +++    IH
Sbjct: 436 IFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIH 495



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 61/125 (48%), Gaps = 2/125 (1%)

Query: 95  AKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
           A  VF ++Q  +   WN MI G A+      A  ++  M    + P+S TF  L  +C+ 
Sbjct: 31  AISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAK 90

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
               +EG++    +  +Y +   L  + +++ +  + G +E+A+ +  + +   DVV + 
Sbjct: 91  SKAAQEGKQIHAQIL-KYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHR-DVVSYT 148

Query: 215 ALLSA 219
           A+++ 
Sbjct: 149 AMITG 153


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/413 (46%), Positives = 259/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  ++ VSW++MIGG+V +    EAL  FR M  S ++PD  T   V+  C+ L AL H 
Sbjct: 233 MGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG 292

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           +  H  +I +    + ++  ALIDMYSKCGKI  A+EVF+ + R+D+  WNAMI G  IH
Sbjct: 293 FCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIH 352

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  +F  +    + PD ITF+ LL++CSH GLV EGR +FD M   +SI P++EH
Sbjct: 353 GLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEH 412

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
              MVD+LGRAG I+EA+  I +M  EPDV +W ALLSACR  K +ELGE     I  L 
Sbjct: 413 CICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLG 472

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G++VLLSN+Y    RWD A ++R   K  G++K  G SW+E+ G++H F  GD+SH
Sbjct: 473 PESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSH 532

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            +   I++ L  L+   K  G+      V  DV EEEKE  L +HSEKLA+A+GIL    
Sbjct: 533 LQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKA 592

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  I ++KNLR+C DCH+ IK ++ + +R I VRD  RFH F+ G C+CGD+W
Sbjct: 593 GRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 645



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 117/232 (50%), Gaps = 11/232 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+  V+ WN +I  +  N  FD A+  +  ML   V P+K+T+  V+  C+ L A+   
Sbjct: 69  IPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDG 128

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+      +E +  +  AL+D Y+KCG +  A+ +F ++   DV  WNAMI+G +++
Sbjct: 129 VEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLY 188

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  DA  +  +M+   + P+S T +G+L  C  C L    RK FD M  R  +      
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVLPTC-QCLLY--ARKIFDVMGVRNEVS----- 240

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTM---EPDVVVWRALLSACRTFKRLELG 229
           + AM+     +  ++EA  +   M +   +PD+     +L AC     L+ G
Sbjct: 241 WSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG 292



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 86/183 (46%), Gaps = 2/183 (1%)

Query: 41  KFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD 100
           K  +  ++  C +  +L  A  +H   ++     +  +   L  +Y  C ++ +A+ +FD
Sbjct: 8   KNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFD 67

Query: 101 TVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE 160
            +    V +WN +I   A +G    A  ++  M    V P+  T+  +L ACS    +E+
Sbjct: 68  EIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIED 127

Query: 161 GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
           G +   H +  + ++  +    A+VD   + G + EA  L +SM+   DVV W A+++ C
Sbjct: 128 GVEIHSHAK-MFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR-DVVAWNAMIAGC 185

Query: 221 RTF 223
             +
Sbjct: 186 SLY 188


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/413 (44%), Positives = 262/413 (63%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+ D  SW++M+ G+ +N +  EAL+ FREM +  V  D FT ASV+  C  LGAL+  
Sbjct: 168 MPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLG 227

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH+ + ++ ++++ +L  AL+ MYSKCG +  A +VF  +   DV+ W+ MI+G AIH
Sbjct: 228 KWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIH 287

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F  M+    +P+ +TF  +L+ACSH GLVE+G + F+ M + Y I PQ++H
Sbjct: 288 GHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKH 347

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE---VAIVNIS 237
           YG MVDL  RAG +  A+  I +M +EP+VV+WR LL AC+T    +LGE     I+ + 
Sbjct: 348 YGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLD 407

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                +YVL+SN+Y  L RW +   VR +MK K  +K  G S +E+  ++H+F  GD SH
Sbjct: 408 PSSPENYVLVSNVYASLGRWSSVCQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESH 467

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE + I  +L  + ++ K  G + +T  VL D+ EEEKE  L  HSE+LA+AYG+L T  
Sbjct: 468 PEREKIYGMLHQMARKLKQVGHVNSTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPN 527

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G+ IRI KNLR+C DCH  IK+IS +  R IIVRDR+RFH F    CSC DYW
Sbjct: 528 GSPIRIVKNLRVCRDCHEVIKLISEVYNREIIVRDRVRFHHFRERGCSCNDYW 580



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 104/211 (49%), Gaps = 2/211 (0%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           WN++I G+  +     A+  +R+M    + P+ +TF  V+  C +L  L     +H+ I+
Sbjct: 75  WNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIV 134

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
           +  ++    L   LI +Y+ CG +  A  +FD +   D + W+ M+SG A +G A +A  
Sbjct: 135 KVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALK 194

Query: 129 IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLL 188
           +F +M+  NV  D+ T   ++  C   G ++ G+    +M  +  ++  +    A+V + 
Sbjct: 195 LFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYM-DKEGVKIDVVLGTALVGMY 253

Query: 189 GRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            + G ++ A  +   M  E DV  W  +++ 
Sbjct: 254 SKCGSLDNALKVFQGMA-ERDVTAWSTMIAG 283



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 79/182 (43%), Gaps = 7/182 (3%)

Query: 40  DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID--MYSKCGKIQMAKE 97
           D+ +  + I  C R+G L  A   H  ++   +  +  L++ LI+    +  G +  A  
Sbjct: 6   DQGSLVAAIKRCTRVGDLK-AIQAH--MVRANLTQDTFLTSKLIESSAVTLSGHVAYAHR 62

Query: 98  VFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL 157
           +F      ++ +WN +I G +I      A A++  M +  + P+S TF  +L AC     
Sbjct: 63  IFSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLR 122

Query: 158 VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           + EG++    +  +  +  +      ++ L    G ++ A  +   M  EPD   W  ++
Sbjct: 123 LCEGQELHSQI-VKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMP-EPDSASWSTMV 180

Query: 218 SA 219
           S 
Sbjct: 181 SG 182


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/414 (45%), Positives = 265/414 (64%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           M +K++VSW++MI G+ RN ++ +A+  FR+M     + P+  T  SV+  CA LGAL+ 
Sbjct: 219 MMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDL 278

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             W+H  I   KIE+   L  AL DMY+KCG +  AK VF  +   DV  W+ +I G+A+
Sbjct: 279 GKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAM 338

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G A +A   F +M    + P+ I+F+GLLTAC+H GLV++G +YFD M   Y I P++E
Sbjct: 339 YGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIE 398

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HYG +VDLL RAG +++A  LI SM M+P+V+VW ALL  CR +K  E GE  +  I  L
Sbjct: 399 HYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILEL 458

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G  V L+N+Y  + R D A + R  M+     K+ G SW+E+   +++F  GD S
Sbjct: 459 DSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSS 518

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP++  I  ++  L  + K  G+ P T+LV+ ++ EEEKE  L  HSEKLALA+G++ TS
Sbjct: 519 HPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTS 578

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            GT IRI KNLR+C+DCH  IK+IS+++ R I+VRDR RFH F+ G CSC DYW
Sbjct: 579 EGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCSCNDYW 632



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 113/247 (45%), Gaps = 36/247 (14%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFRE--MLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++ ++N+++  F ++  +   + +F    +L +   PD++TF SV+  CA L  +     
Sbjct: 89  NIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQK 148

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  + +   E N  +  +L+D+Y K G   +A+++FD +   DV  WN +ISG    G+
Sbjct: 149 VHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGM 208

Query: 123 AADASAIFTKM-------------------------EMFNVL-------PDSITFLGLLT 150
              A  +F  M                         E+F  +       P+ +T + +L+
Sbjct: 209 VDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLS 268

Query: 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
           AC+H G ++ G K+      R  I+  L    A+ D+  + G + EA G+   M  E DV
Sbjct: 269 ACAHLGALDLG-KWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMH-ERDV 326

Query: 211 VVWRALL 217
           + W  ++
Sbjct: 327 ISWSIII 333


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/413 (43%), Positives = 263/413 (63%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +++V+W +MI G  R    DEA+  FREM  + ++PD  T  SV+  CA  GAL+  
Sbjct: 153 MPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIG 212

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           YW+H  I +  +  +  LS AL+DMY+KCG I+ AK+VF  +   D + W++MI G A H
Sbjct: 213 YWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYH 272

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GLA DA   F +M    V PD +TFL +L+AC+H GLV  GR+++  M   + I+P +EH
Sbjct: 273 GLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRGRRFWSLML-EFGIEPSVEH 331

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG  VDLL R+G +EEAY + T+M + P+   WR+LL  C+  K L LGE+    ++ + 
Sbjct: 332 YGCKVDLLCRSGLVEEAYRITTTMKIPPNAATWRSLLMGCKKKKLLNLGEIVARYLLELE 391

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
            L   +Y+++SN+Y  L +W+    +R++MK+K ++   G S +E+ GV+H+F  GD+SH
Sbjct: 392 PLNAENYIMISNLYSSLSQWEKMSELRKVMKEKCIKPVPGCSSIEVDGVVHEFVMGDQSH 451

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE + + + +  +  R +  G+ P+   VL  V +EEKE  L  HSE+ A+AYG+LKT  
Sbjct: 452 PEVKMLREFMEEMSMRVRDSGYRPSISDVLHKVVDEEKECALSEHSERFAIAYGLLKTRA 511

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IR+ KNLR+C DCH  IK+IS+L  R IIVRDR+RFH+F  G CSC D+W
Sbjct: 512 PIVIRVVKNLRVCVDCHEVIKIISKLYEREIIVRDRVRFHKFIKGTCSCKDFW 564



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 117/220 (53%), Gaps = 6/220 (2%)

Query: 1   MPDKDVVSWNSMIGGFVR-NARFDEALRFFREMLSSKVE-PDKFTFASVIYGCARLGALN 58
           +P  ++ SWNS+I G+ + +    E +  F+++  +    P+ FT A V+  CA + A  
Sbjct: 50  IPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFG 109

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               VH+ +++     +  +  +L++ Y KC +I  A++VF+ +   ++  W AMISG A
Sbjct: 110 EGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHA 169

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR-SRYSIQPQ 177
             G   +A  +F +M+   + PD++T + +++AC+  G ++ G  Y+ H    +Y +   
Sbjct: 170 RVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIG--YWLHAYIEKYFVLTD 227

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           LE   A+VD+  + G IE A  +   M ++ D   W +++
Sbjct: 228 LELSTALVDMYAKCGCIERAKQVFVHMPVK-DTTAWSSMI 266


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/419 (45%), Positives = 263/419 (62%), Gaps = 9/419 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEP-DKFTFASVIYGCARLGALNH 59
           MP K+  SWN+M+  +V+  RF EA   F  M +      DKF   +++  C  LGAL+ 
Sbjct: 214 MPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGALDQ 273

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRND--VSVWNAMISGV 117
             W+H  I    IEL+  L+ A++DMY KCG ++ A +VF ++      +S WN MI G+
Sbjct: 274 GKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGL 333

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           A+HG    A  +F +ME   V PD ITFL LLTAC+H GLVEEGR YF +M   Y I+P+
Sbjct: 334 AMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPR 393

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IV 234
           +EH+G MVDLLGRAG + EA  LI  M + PDV V   LL AC+  + +ELGE     ++
Sbjct: 394 MEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGACKKHRNIELGEEIGRRVI 453

Query: 235 NISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294
            +     G YVLL+N+Y    +W+ A  VR++M  +GV+K+ G S +EL G +H+F AG+
Sbjct: 454 ELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMIELQGTVHEFIAGE 513

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVL--MDVSEEEK-EGNLYHHSEKLALAYG 351
           R+HP+A+ +   +  +++  KS G++  T  VL   D  EEE  E  LY+HSEKLA+A+G
Sbjct: 514 RNHPQAKELHAKVYEMLEHLKSVGYVADTNGVLHGHDFDEEEDGENPLYYHSEKLAIAFG 573

Query: 352 ILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + +T PG  +RI KNLRIC DCH   K+IS +  R IIVRDR RFHRF+ G CSC DYW
Sbjct: 574 LSRTKPGETLRILKNLRICEDCHHACKLISTVFDREIIVRDRTRFHRFKMGQCSCQDYW 632



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 126/282 (44%), Gaps = 45/282 (15%)

Query: 1   MPDKDVVSWNSMIGGFVRNARF--DEALRFFREMLSSKVEPDKFTFASVIYGCARL--GA 56
           +P  D   +N++I GF+ +     +  L  +  ML + V P+ FTF S++  C ++  G 
Sbjct: 83  IPQPDAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKIQHGM 142

Query: 57  LNHA------YWVHNLIIEKKIELNFILSA--------------------ALIDMYSKCG 90
             HA      +  H++ +   I +     A                    +LI  YSK G
Sbjct: 143 QIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWG 202

Query: 91  KIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM--EMFNVLPDSITFLGL 148
            I  A  +F  + + + + WNAM++         +A A+F +M  E  NVL D      +
Sbjct: 203 LIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVL-DKFVATTM 261

Query: 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
           L+AC+  G +++G+   ++++ R  I+   +   A+VD+  + G +E+A  +  S+ +  
Sbjct: 262 LSACTGLGALDQGKWIHEYIK-RNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPC 320

Query: 209 D-VVVWRALL----------SACRTFKRLELGEVAIVNISRL 239
             +  W  ++          +A + FK +E   VA  +I+ L
Sbjct: 321 RWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFL 362


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/411 (45%), Positives = 260/411 (63%), Gaps = 4/411 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD+VSW SMI   V N    EAL  F  ++ + +EPD  T  SV+Y  A L +L     +
Sbjct: 516 KDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEI 575

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I K   L  +++ +L+DMY++CG ++ A+ +F+ V++ D+ +W +MI+   +HG  
Sbjct: 576 HGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCG 635

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            DA  +F+KM   NVLPD ITFL LL ACSH GLV EG+++F+ M++ Y ++P  EHY  
Sbjct: 636 KDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYAC 695

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
           +VDLL R+  +EEAY  + +M +EP   VW ALL ACR     +LGEVA   ++ ++   
Sbjct: 696 LVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTEN 755

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G+YVL+SN +    RW+  E VR IMK   ++K  G SW+E+   IH F A D+SHP+ 
Sbjct: 756 SGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMARDKSHPQC 815

Query: 301 QAIDKILGSLIQRTKSE-GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
             I   L    +  K + G+   T+LV  DV EEEK   LY HSE+LAL YG+L TS GT
Sbjct: 816 NNIYLKLAQFTKLLKEKGGYRAQTKLVFHDVCEEEKTQMLYGHSERLALGYGLLVTSKGT 875

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            +RI+KNLRIC DCH++ K+ S + +R ++VRD  RFH FE GLCSCGD+W
Sbjct: 876 CLRITKNLRICDDCHAFFKIASEISQRTLVVRDASRFHHFERGLCSCGDFW 926



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 110/227 (48%), Gaps = 16/227 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++ + +WN+MIG  V   R+ EA+  ++EM    V  D FTF  V+  C         
Sbjct: 108 MSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLG 167

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT--VQRNDVSVWNAMISGVA 118
             +H + ++        +  ALI MY+KCG +  A+ +FD+  ++++D   WN++IS   
Sbjct: 168 CEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHV 227

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
             G + +A ++F +M+   V  ++ TF+  L AC       EG  +    R  +++  + 
Sbjct: 228 GEGESLEALSLFRRMQEVGVESNTYTFVSALQAC-------EGPTFIKIGRGIHAVILKS 280

Query: 179 EHY------GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            H+       A++ +    G +E+A  +  SM  + D V W  LLS 
Sbjct: 281 NHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFK-DCVSWNTLLSG 326



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 120/220 (54%), Gaps = 5/220 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KD++SW ++I G+ +N    +AL   R++   K++ D     S++  C+ L +    
Sbjct: 413 MPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLI 472

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++  +  + ++  A++++Y +   +  A+ VF+++   D+  W +MI+    +
Sbjct: 473 KEIHGYVLKGGLA-DILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHN 531

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLE 179
           GLA +A  +F  +   N+ PD IT + +L A +    +++G++    + R  + ++  + 
Sbjct: 532 GLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIA 591

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +  ++VD+  R G +E A   I +   + D+++W ++++A
Sbjct: 592 N--SLVDMYARCGTMENARN-IFNYVKQRDLILWTSMINA 628



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 102/219 (46%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M   D VSWNS+I   V      EAL  FR M    VE + +TF S +  C     +   
Sbjct: 211 MEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIG 270

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H +I++     +  +S ALI MY+ CG+++ A+ VF ++   D   WN ++SG+  +
Sbjct: 271 RGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQN 330

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            + +DA   F  M+     PD ++ L ++ A      +  G +   +   ++ I   +  
Sbjct: 331 DMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYA-IKHGIDSNMHI 389

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +++D+ G+   ++        M  E D++ W  +++ 
Sbjct: 390 GNSLIDMYGKCCCVKYMGSAFEYMP-EKDLISWTTIIAG 427



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 108/220 (49%), Gaps = 9/220 (4%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD VSWN+++ G V+N  + +A+  F++M  S  +PD+ +  ++I    R   L     V
Sbjct: 315 KDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEV 374

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   I+  I+ N  +  +LIDMY KC  ++     F+ +   D+  W  +I+G A +   
Sbjct: 375 HAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECH 434

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH--- 180
            DA  +  K+++  +  D +    +L ACS  GL  E  K    +   Y ++  L     
Sbjct: 435 LDALNLLRKVQLEKMDVDPMMIGSILLACS--GLKSE--KLIKEIHG-YVLKGGLADILI 489

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
             A+V++ G    ++ A  +  S+  + D+V W ++++ C
Sbjct: 490 QNAIVNVYGELALVDYARHVFESINSK-DIVSWTSMITCC 528



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 16/207 (7%)

Query: 22  FDEALRFFREMLSSKVE-PDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFI-LS 79
           F     FF + L +    P +  ++  +  CA   AL     +H   ++ +  L+ + L 
Sbjct: 26  FQSLTHFFTDPLPTTTRFPLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLD 85

Query: 80  AALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVL 139
              + MY KCG    A +VFD +    +  WNAMI      G   +A  ++ +M +  V 
Sbjct: 86  TKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVS 145

Query: 140 PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG------AMVDLLGRAGH 193
            D+ TF  +L A   CG  +E R   +     + +  +  + G      A++ +  + G 
Sbjct: 146 LDAFTFPCVLKA---CGAFKERRLGCE----IHGVAVKCGYGGFVFVCNALIAMYAKCGD 198

Query: 194 IEEAYGLITSMTMEP-DVVVWRALLSA 219
           +  A  L  S  ME  D V W +++SA
Sbjct: 199 LGGARVLFDSGLMEKDDPVSWNSIISA 225


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/414 (43%), Positives = 258/414 (62%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++ VSW++M+ G+V+     EAL  F +M +  V PD      V+  CA+LGAL   
Sbjct: 185 MPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQG 244

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH  +    I +   L  AL+DMY+KCG++Q+  EVF+ ++  +V  W  MI G+A+H
Sbjct: 245 KWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMH 304

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  +D+  +F++ME   V PD I F+G L AC+H GLV++GR+ F+ M + Y I+P++EH
Sbjct: 305 GRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEH 364

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI---VNIS 237
           YG MVDLL R G + EA  ++  M M+PD ++W AL++ CR  K +EL E  I   + + 
Sbjct: 365 YGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVIKHWIELE 424

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLL N+Y    R  +A  +R +M++KGV K+ G S +E+ GVIHQF  GD SH
Sbjct: 425 PDKSGAYVLLGNIYSASGRHASAREIRNLMREKGVEKTPGCSNVEIKGVIHQFIVGDLSH 484

Query: 298 PEAQAIDKILGSLIQRTK-SEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           P  + I      +  R +  EG++P  + VL+D+ EEE E  L  HSEKLA+A+ ++ T 
Sbjct: 485 PRIKDILTKWYEIDSRIRLEEGYVPDKKEVLLDIEEEEMESALSRHSEKLAIAFALISTE 544

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
               IRI KNLR+C DCH   K+IS++  R IIVRDR RFH F+ G CSC DYW
Sbjct: 545 DYMPIRIVKNLRVCQDCHHVTKLISKVYGREIIVRDRTRFHLFKDGTCSCKDYW 598



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 73/136 (53%), Gaps = 2/136 (1%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
           LI  +++ G++  A+ +FD +   +   W+AM++G    G   +A  +F++M+   V PD
Sbjct: 165 LITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPD 224

Query: 142 SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
               +G+L AC+  G +E+G+    ++++  +I+  +    A+VD+  + G ++    + 
Sbjct: 225 DTVLVGVLAACAQLGALEQGKWVHGYLKAN-NIRMTVFLGTALVDMYAKCGEVQLGMEVF 283

Query: 202 TSMTMEPDVVVWRALL 217
             M  + +V+ W  ++
Sbjct: 284 EGMK-DKNVLAWTTMI 298



 Score = 46.2 bits (108), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 8/93 (8%)

Query: 141 DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL 200
           D+ TF  L+TA +  G V + R  FD M  R ++      + AMV+   +AG   EA G+
Sbjct: 158 DASTFNTLITAHARAGRVADARSLFDEMPERNAVS-----WSAMVNGYVQAGDGREALGV 212

Query: 201 ITSMTME---PDVVVWRALLSACRTFKRLELGE 230
            + M  +   PD  V   +L+AC     LE G+
Sbjct: 213 FSQMQAQGVRPDDTVLVGVLAACAQLGALEQGK 245


>gi|357467379|ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493022|gb|AES74225.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 566

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/415 (45%), Positives = 265/415 (63%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVVSW SMI GFV +    EA++ F+ ML   V+ ++ T  SV+ GCA  GAL+  
Sbjct: 152 MSHRDVVSWTSMIAGFVNHHLTVEAIQLFQRMLEVGVDVNEATVISVLRGCADSGALSVG 211

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH ++ EK I+    +  ALI MYSKCG ++ A+EVFD V   DV VW AMI G+A H
Sbjct: 212 RKVHGIVKEKGIDFKANVCTALIHMYSKCGCLESAREVFDDVLDRDVFVWTAMIYGLACH 271

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G+  +A  +F +ME  NV PD  T + +L+A  + GLV EG  +F+ ++ RYS++P ++H
Sbjct: 272 GMCKEAIELFLEMETCNVKPDERTIMVVLSAYRNAGLVREGYMFFNDVQKRYSMKPNIKH 331

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE-----VAIVN 235
           +G MVDLL + G +EEA   I +M M+PD V+WR L+ AC+     E  E     + +  
Sbjct: 332 FGCMVDLLAKGGCLEEAEDFINAMPMKPDAVIWRTLIWACKVHADTERAERLMKHLELQG 391

Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           +S    G Y+L SN+Y    +W     VRE+M KKG+ K  G S +E+ GV+H+F  GD 
Sbjct: 392 MSAHDSGSYILASNVYASTGKWCDKAEVRELMNKKGLVKPPGSSRIEVDGVVHEFVMGDY 451

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
            HP+ + I   L  ++ + + EG+ P    V++++ +EEK   L HHSEKLALAYG+++T
Sbjct: 452 DHPDTEKIFIKLDQMVDKLRKEGYNPKVSEVMLEMDDEEKAIQLLHHSEKLALAYGLIRT 511

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            PG++IRI KNLR C DCH ++K+IS++ +R IIVRDRIRFH F+ G CSC DYW
Sbjct: 512 CPGSKIRIVKNLRSCEDCHEFMKLISKVYQRDIIVRDRIRFHHFKNGDCSCKDYW 566



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 105/222 (47%), Gaps = 8/222 (3%)

Query: 2   PDKDVVSWNSMIGGFVRNARFD---EALRFFREMLSSKV---EPDKFTFASVIYGCARLG 55
           P  +   +N++I  +   +      +AL  F  ML       +PD FT++  +  C RL 
Sbjct: 46  PSLNSYYYNTIIRAYSHTSNPTHHFQALSLFIFMLQPHTNVPKPDTFTYSFALKSCGRLK 105

Query: 56  ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
               A  +H  I +     +  +  ALI MYS+ G++ +A++VFD +   DV  W +MI+
Sbjct: 106 LTQQAKQLHGFINKMGFGFDLYIQNALIHMYSEIGELVIARQVFDRMSHRDVVSWTSMIA 165

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           G   H L  +A  +F +M    V  +  T + +L  C+  G +  GRK    ++ +  I 
Sbjct: 166 GFVNHHLTVEAIQLFQRMLEVGVDVNEATVISVLRGCADSGALSVGRKVHGIVKEK-GID 224

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
            +     A++ +  + G +E A  +   + ++ DV VW A++
Sbjct: 225 FKANVCTALIHMYSKCGCLESAREVFDDV-LDRDVFVWTAMI 265


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/416 (43%), Positives = 275/416 (66%), Gaps = 6/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           +PD+DVVSWN++I G+++N   +EA+R + +M + + ++P + TF SV+   + LG L  
Sbjct: 331 LPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQ 390

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H L I+  + L+  ++  LID+Y+KCGK+  A  +F+ + R     WNA+I+G+ +
Sbjct: 391 GMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGV 450

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG  A A ++F++M+   + PD +TF+ LL ACSH GLV++GR +FD M++ Y I P  +
Sbjct: 451 HGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAK 510

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY  MVD+LGRAG ++EA+  I SM ++PD  VW ALL ACR    +E+G+VA  N+  L
Sbjct: 511 HYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFEL 570

Query: 240 MG---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVL+SNMY  + +WD  + VR +++++ ++K+ G S +E+ G +  F +G ++
Sbjct: 571 DPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYSGTQT 630

Query: 297 --HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
             HP+ + I + L  L+ + KS G++P    VL DV E+EKE  L +HSE+LA+A+GI+ 
Sbjct: 631 EPHPQHEEIQRGLHDLLAKMKSAGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIIN 690

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T PGT + I KNLR+C DCHS  K IS++  R IIVRD  RFH F+ G CSCGD+W
Sbjct: 691 TPPGTPLHIYKNLRVCGDCHSATKYISKITEREIIVRDANRFHHFKDGHCSCGDFW 746



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 1/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++DV +WN+M+ G  RN R  +A+     M+   V  D  T +SV+  C  LG    A
Sbjct: 128 MPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALA 187

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++  +     +  ALID+Y K G +  A  VF  +   D+  WN++IS     
Sbjct: 188 LVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQG 247

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  A A  +F  M    V PD +T + L +A + CG     +    ++R R      +  
Sbjct: 248 GKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIA 307

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             AMVD+  +   I+ A  +  ++  + DVV W  L++ 
Sbjct: 308 GNAMVDMYAKMSKIDAAQKVFDNLP-DRDVVSWNTLITG 345



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 118/257 (45%), Gaps = 45/257 (17%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D+V+WNS+I    +  +   A+  F  M+ S V PD  T  S+    A+ G    A  V
Sbjct: 232 RDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSV 291

Query: 64  HNLIIEKKIELNFILSA-ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           H  +  +  ++  I++  A++DMY+K  KI  A++VFD +   DV  WN +I+G   +GL
Sbjct: 292 HCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGL 351

Query: 123 AADASAIFTKMEMFNVL-PDSITFLGLLTACSHCGLVEEGRK------------------ 163
           A +A  I+  M     L P   TF+ +L A S+ G +++G +                  
Sbjct: 352 ANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTT 411

Query: 164 -----------------YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM 206
                             F+HM  R S  P    + A++  LG  GH  +A  L + M  
Sbjct: 412 CLIDLYAKCGKLVEAMFLFEHM-PRRSTGP----WNAIIAGLGVHGHGAKALSLFSQMQQ 466

Query: 207 E---PDVVVWRALLSAC 220
           E   PD V + +LL+AC
Sbjct: 467 EEIKPDHVTFVSLLAAC 483



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 115/248 (46%), Gaps = 25/248 (10%)

Query: 34  SSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQ 93
           +  + PD FTF  ++   A  G  + A      +    +  N   S +L+  Y + G++ 
Sbjct: 62  AHPLRPDSFTFPPLVR--AAPGPASAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVA 119

Query: 94  MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
            A  VFD +   DV  WNAM+SG+  +  AADA  +  +M    V  D++T   +L  C 
Sbjct: 120 EAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCV 179

Query: 154 HCGLVEEGRKYFDHMRS-RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
             G  +       H+ + ++ +  +L    A++D+ G+ G + EA+ +   M +  D+V 
Sbjct: 180 VLG--DRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALR-DLVT 236

Query: 213 WRALLSACRTFKR-----------LELG----EVAIVNISRLMG--GDYVLLSNMYCYLK 255
           W +++SA     +           +E G     + +V+++  +   GD +   +++CY++
Sbjct: 237 WNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVR 296

Query: 256 R--WDTAE 261
           R  WD  +
Sbjct: 297 RRGWDVGD 304


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/413 (46%), Positives = 260/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K+++SWN MI  +V N+  +EA+  F +M    ++PD  T AS++  C  L AL   
Sbjct: 266 MTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLG 325

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I +  ++ N +L  AL+DMY+KCG ++ A++VFD ++  DV  W +M+S     
Sbjct: 326 RRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRS 385

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA A+F KM      PDSI F+ +L+ACSH GL+++GR YF  M  +Y I P++EH
Sbjct: 386 GQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEH 445

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           +  MVDL GRAG +EEAY  I  M MEP+  VW ALLSACR   ++++G VA   +  ++
Sbjct: 446 FACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLA 505

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y     W    NVR  MKK G++K  G S +EL G +H F AGD+ H
Sbjct: 506 PKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYH 565

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+A+ I   L  L+ + K  G++P TE  L DV  E+KE +L  HSEKLA+ + IL T  
Sbjct: 566 PQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQ 625

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IRI+KNLR+C DCH  IK+IS+++ R IIVRD  RFH F  G+CSCGDYW
Sbjct: 626 GTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 113/230 (49%), Gaps = 6/230 (2%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K+VV +N MI  +V N  + EAL  F+ MLS    PD +TF  V+  C+ L  L     
Sbjct: 99  EKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQ 158

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH+ I++  ++ N  +  AL+ MY KCG ++ A++V D +   DV  WN+M++G A  G 
Sbjct: 159 VHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQ 218

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             DA  I  +M+  N+  D+ T   L     +  L  E  +Y  +M  R + +  L  + 
Sbjct: 219 FDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSL--ENVQYIHNMFERMT-KKNLISWN 275

Query: 183 AMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELG 229
            M+ +        EA  L   M    M+PD V   +LL AC     L LG
Sbjct: 276 VMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLG 325



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 26/222 (11%)

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
           ++I + + ++  L+  L+  YS  G+  +A+ +FD     +V  +N MI     + L  +
Sbjct: 61  IVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVE 120

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           A +IF  M      PD  TF  +L ACS    +  G +  D +  +  +   L    A+V
Sbjct: 121 ALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAI-VKVGLDTNLFIGNALV 179

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRAL-------------LSACRTFKRLELGEVA 232
            + G+ G + EA  ++  M    DVV W ++             L  C+    L L   A
Sbjct: 180 AMYGKCGCLREARKVLDQMPYR-DVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDA 238

Query: 233 IVNISRLMGGDYVLLSNMYCY--LKRWDTAENVREIMKKKGV 272
                    G    LS + CY  L+      N+ E M KK +
Sbjct: 239 ---------GTMASLSPVVCYTSLENVQYIHNMFERMTKKNL 271


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/413 (43%), Positives = 259/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P +D + WNSM+ G  +N   DEAL  FR ML S ++P   TF+S+I  C  L +L   
Sbjct: 234 LPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLG 293

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +I    + N  +S++LIDMY KCG + +A+ +FD +Q  D+  W AMI G A+H
Sbjct: 294 KQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALH 353

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +A  +F +ME+ N+ P+ ITFL +LTACSH GLV++G KYF+ M   Y I P LEH
Sbjct: 354 GPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEH 413

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG-EVA--IVNIS 237
           + A+ D LGR G +EEAY  I+ M ++P   VW  LL AC+  K   L  EVA  I ++ 
Sbjct: 414 HAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLE 473

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G +++LSN Y    RW+ A ++R+ M+KKG++K    SW+E+    H F A D+SH
Sbjct: 474 PRSMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSH 533

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + I   L    ++   +G++P T+ V  D+ EE+K   L  HSEKLA+ +GI+ T P
Sbjct: 534 PWYERIIDALNVFSEQMVRQGYVPNTDDVFQDIEEEQKNSVLCGHSEKLAIVFGIISTPP 593

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IR+ KNLR+C DCH+  K IS+++ R I++RD  RFH F+ G+CSCGD+W
Sbjct: 594 GTTIRVMKNLRVCVDCHTVTKFISKIVGREIVMRDANRFHHFKDGICSCGDFW 646



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 121/249 (48%), Gaps = 12/249 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KDVVSWN+++ G   + R  EAL   REM     +PD FT +SV+   A    +   
Sbjct: 133 MPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRG 192

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H          +  + ++LIDMY+ C +   + +VFD +   D  +WN+M++G A +
Sbjct: 193 MELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQN 252

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M    + P  +TF  L+ AC +   +  G++   ++  R      +  
Sbjct: 253 GSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYV-IRGGFDGNVFI 311

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL----------SACRTFKRLELGE 230
             +++D+  + G++  A  +   +   PD+V W A++           A   F R+ELG 
Sbjct: 312 SSSLIDMYCKCGNVSIARRIFDRI-QSPDIVSWTAMIMGHALHGPAREALVLFDRMELGN 370

Query: 231 VAIVNISRL 239
           +   +I+ L
Sbjct: 371 LKPNHITFL 379



 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 65/305 (21%), Positives = 110/305 (36%), Gaps = 65/305 (21%)

Query: 8   SWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYG----CARLGALNHAYWV 63
           SW   I        F  A+  F  M +S       +  + + G    CA LG       +
Sbjct: 21  SWAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASL 80

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGK--------------IQMAKEVFDTVQRNDVSV 109
           H L +      +   + AL+++Y K                 ++  ++VFD +   DV  
Sbjct: 81  HALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVS 140

Query: 110 WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSIT------------------------- 144
           WN ++ G A  G   +A  +  +M      PDS T                         
Sbjct: 141 WNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFAT 200

Query: 145 --------FLG--LLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194
                   F+G  L+   ++C   +   K FD++  R +I      + +M+    + G +
Sbjct: 201 RNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAIL-----WNSMLAGCAQNGSV 255

Query: 195 EEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLS--- 248
           +EA GL   M    ++P  V + +L+ AC     L LG+     + R      V +S   
Sbjct: 256 DEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSL 315

Query: 249 -NMYC 252
            +MYC
Sbjct: 316 IDMYC 320


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/410 (47%), Positives = 263/410 (64%), Gaps = 3/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD V W +MI GFVRN   + AL  FR M    V P++FT   V+  C++LGAL    WV
Sbjct: 241 KDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWV 300

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H+ + + +IELN  +  ALI+MYS+CG I  A+ VFD ++  DV  +N MISG++++G +
Sbjct: 301 HSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKS 360

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  +F  M    + P ++TF+G+L ACSH GLV+ G K F  M   Y ++PQ+EHYG 
Sbjct: 361 RQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGC 420

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE-VAIVNISRLMG- 241
           MVDLLGR G +EEAY LI +M M PD ++   LLSAC+  K LELGE VA V   R    
Sbjct: 421 MVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQAD 480

Query: 242 -GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G YVLLS++Y    +W  A  VR  MK+ G++K  G S +E+   IH+F  GD  HP  
Sbjct: 481 SGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRK 540

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + I + L  L +  + EG+ P  E+VL D+ + EKE  L  HSE+LA+ YG++ T P T 
Sbjct: 541 ERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGLISTEPCTV 600

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IR+ KNLR+C+DCHS IK+I+++ RR ++VRDR RFH FE G CSCGDYW
Sbjct: 601 IRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 650



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 114/247 (46%), Gaps = 32/247 (12%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + +V  + ++I GFV +  + +A++ +  ML   + PD +  AS++  C    AL     
Sbjct: 109 NPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGRE 168

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT--------------------- 101
           VH+  ++  +  N ++   ++++Y KCG++  A+ VF+                      
Sbjct: 169 VHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLV 228

Query: 102 ---------VQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC 152
                    V+R D   W AMI G   +     A   F  M+  NV P+  T + +L+AC
Sbjct: 229 EEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSAC 288

Query: 153 SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
           S  G +E GR    +MR ++ I+  L    A++++  R G I+EA  +   M  + DV+ 
Sbjct: 289 SQLGALEIGRWVHSYMR-KFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMK-DRDVIT 346

Query: 213 WRALLSA 219
           +  ++S 
Sbjct: 347 YNTMISG 353



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D+DV+++N+MI G   N +  +A+  FR M+  ++ P   TF  V+  C+  G ++  
Sbjct: 339 MKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFG 398

Query: 61  YWV-HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN-DVSVWNAMISGVA 118
           + + H++  +  +E        ++D+  + G+++ A ++  T++   D  +   ++S   
Sbjct: 399 FKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACK 458

Query: 119 IH 120
           +H
Sbjct: 459 MH 460



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 5/164 (3%)

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
           +N    +H  +I      +  +   L+   SKC  I  A  +F      +V ++ A+I G
Sbjct: 62  INQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDG 121

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQ 175
               G   DA  ++++M   ++LPD+     +L AC     + EGR+   H R+ +  + 
Sbjct: 122 FVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREV--HSRALKLGLS 179

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                   +++L G+ G + +A  +   M    DVV    ++S+
Sbjct: 180 SNRLVRLRIMELYGKCGELGDARRVFEEMP--EDVVASTVMISS 221


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/413 (43%), Positives = 264/413 (63%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP  D V+W++MIGG+ R  R  EA+  FREM  ++V PD+ T  S++  C  LGAL   
Sbjct: 194 MPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELG 253

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+   I   +I     +S ALIDM++KCG I  A ++F  +    +  W ++I G+A+H
Sbjct: 254 KWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMH 313

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A+ +F +M    V PD + F+GLL+ACSH GLVE GR+YF  M  +Y + P++EH
Sbjct: 314 GRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEH 373

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVD+  R G ++EA   + +M +EP+ V+ R L+SACR     +LGE     ++   
Sbjct: 374 YGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHE 433

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
            L   +YVLLSN+Y     W+    +RE+M+ KG++K  G + +E+   I++F AGD+SH
Sbjct: 434 PLHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSH 493

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            + + I +++  + +  K  G+ P+T  VL+D++EE+KE +L  HSEKLA+A+G+L+T P
Sbjct: 494 KQHKEIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDSLNRHSEKLAIAFGLLRTPP 553

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IRI KNLR+C DCHS  K IS++  R II+RDR RFH F+ G CSCGD+W
Sbjct: 554 GTPIRIVKNLRVCSDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 606



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 117/215 (54%), Gaps = 4/215 (1%)

Query: 5   DVVSWNSMIGGFVRNARF-DEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           D   +N++I  + +     D+AL  +  ML   + P+KFT+  V+  CA L  LN    V
Sbjct: 95  DAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTV 154

Query: 64  HNLIIEKKIELNFILSAALIDMYSKC-GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           H  +++   + +  +   ++ MYS C G I  A++VFD + ++D   W+AMI G A  G 
Sbjct: 155 HGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGR 214

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           + +A A+F +M+M  V PD IT + +L+AC+  G +E G K+ +    R+ I   +E   
Sbjct: 215 STEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELG-KWIEAYIERHEIHKPVEVSN 273

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           A++D+  + G I +A  L  +M  E  +V W +++
Sbjct: 274 ALIDMFAKCGDISKALKLFRAMN-EKTIVSWTSVI 307


>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 600

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/411 (46%), Positives = 264/411 (64%), Gaps = 4/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           DK++V+W+SMIGG+ R    +EAL  FR+M +  V PD+ T  SVI  CA+ GAL+   W
Sbjct: 191 DKNLVAWSSMIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLGKW 250

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  I  K I ++  LS ALIDMY+KCG I+ AK VFD++   D   W+AMI G+A+HGL
Sbjct: 251 VHAFIDRKGITVDLELSTALIDMYAKCGLIERAKSVFDSMVERDTKAWSAMIVGLAMHGL 310

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A DA  +F++M    V P+++TF+G+L+AC+H GLV++GR+Y+  M+    I+  +E+YG
Sbjct: 311 AEDALGLFSRMLQLKVRPNNVTFVGVLSACAHSGLVDDGRRYWCTMQE-LGIEASMENYG 369

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            MVDLL R+G ++EA+  +T M + P+ V+WR LL A ++  R+++ E+A   +  +   
Sbjct: 370 CMVDLLCRSGLLDEAFSFVTGMPISPNSVIWRNLLVASKSSNRIDIVELASRRLFELEPQ 429

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
              +YVLLSN+Y    +WD    +R+ MK   V    G S +E+ G +H+F   D SHPE
Sbjct: 430 NPENYVLLSNLYALNSQWDRVRYMRKKMKDNNVTVVAGCSSIEINGYLHKFVVSDGSHPE 489

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
            + I  +L  +  R    G  P T  VL DV EEEKE  L  HSE+LA+AYG+LKT    
Sbjct: 490 IKKIRLVLREIADRVLCAGHKPWTAAVLHDVVEEEKEVALCEHSERLAIAYGLLKTKAPH 549

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IR+ KNLR C DCH   K+IS+   R IIVRDR+RFHRF GG CSC D+W
Sbjct: 550 VIRVVKNLRFCPDCHEVTKIISKSYGREIIVRDRVRFHRFIGGSCSCNDFW 600



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 108/224 (48%), Gaps = 12/224 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARF------DEALRFFREMLSSKVEPDKFTFASVIYGCARL 54
           +P+     +NS+I     +         D  L + R + +    P+ FT A V+  C  L
Sbjct: 84  IPEPTAFCYNSLIRAVSGSGSSSNSGTTDTFLLYRRMLHAGSPAPNSFTLAFVLKACTAL 143

Query: 55  GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD-TVQRNDVSVWNAM 113
           G       +H       +E +  +   L+++Y++C ++ +A+ VFD  V+  ++  W++M
Sbjct: 144 G---EGQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVALARNVFDGMVEDKNLVAWSSM 200

Query: 114 ISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
           I G +  G+  +A  +F  M+   V PD +T + +++AC+  G ++ G K+      R  
Sbjct: 201 IGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLG-KWVHAFIDRKG 259

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           I   LE   A++D+  + G IE A  +  SM +E D   W A++
Sbjct: 260 ITVDLELSTALIDMYAKCGLIERAKSVFDSM-VERDTKAWSAMI 302



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 8/99 (8%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D  +W++MI G   +   ++AL  F  ML  KV P+  TF  V+  CA  G ++  
Sbjct: 290 MVERDTKAWSAMIVGLAMHGLAEDALGLFSRMLQLKVRPNNVTFVGVLSACAHSGLVDDG 349

Query: 61  --YW--VHNLIIEKKIELNFILSAALIDMYSKCGKIQMA 95
             YW  +  L IE  +E N+     ++D+  + G +  A
Sbjct: 350 RRYWCTMQELGIEASME-NY---GCMVDLLCRSGLLDEA 384


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/415 (45%), Positives = 262/415 (63%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           MP ++ VSW  MI GF+   R+ EAL FF  ML   +V P++     V+  CA LGAL+ 
Sbjct: 270 MPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQ 329

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             W+H  I +  I  +  +S ALIDMY+KCG+I  A  VF+ + + DV  + +MISG++ 
Sbjct: 330 GNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSY 389

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HGL  DA  +F +M   NV+P+ IT LG+L  CSH GLVEEG     +M S + I P++E
Sbjct: 390 HGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSSILANMESLWGIAPKIE 449

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HYG  +DLLGRAG++E A  ++ +M MEPD+V+WRALLSA R    + LGE  I +I +L
Sbjct: 450 HYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIHHNVNLGEQIISHIGQL 509

Query: 240 MGGDY----VLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
              D+    VLLSN+Y  L RW+    +R++M  +    S G SW+E+ G++H+F+  D+
Sbjct: 510 KSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSWIEVNGLVHEFRVADQ 569

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
            HP+   I   L  +++R    G+   T  V  D++EEEKE  +  HSEKLA+A+G++ T
Sbjct: 570 LHPQIVEIRNKLNEILKRLSQIGYSANTMQVSFDLNEEEKEQAVAWHSEKLAIAFGLMST 629

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            PGT IRI KNLR C DCHS +K IS++  R I+VRDR RFH F  G CSC D+W
Sbjct: 630 EPGTLIRIVKNLRTCEDCHSALKTISQVYGREIVVRDRSRFHTFIEGDCSCKDFW 684



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 115/257 (44%), Gaps = 44/257 (17%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLS----SKVEPDKFTFASVIYGCARLGAL 57
           P   +  WN MI  + +     E +  F  ML+     +V PD++TF  VI  C+   +L
Sbjct: 135 PSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISL 194

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
            +   VH ++++   E N  +  ++I+M S   +++ A++VF+ +   DV  W +++ G 
Sbjct: 195 IYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGY 254

Query: 118 AIHGLAADASAIFTKMEMFNVL---------------PDSITF----------------- 145
           A HG    A  +F  M + N +               P+++TF                 
Sbjct: 255 AKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVL 314

Query: 146 LGLLTACSHCGLVEEGR---KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
           + +L+AC+H G +++G     Y D +  R S         A++D+  + G I+ A  +  
Sbjct: 315 VCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNIST----ALIDMYAKCGRIDCASRVFN 370

Query: 203 SMTMEPDVVVWRALLSA 219
            +    DV+ + +++S 
Sbjct: 371 GICKR-DVLSFTSMISG 386


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/410 (46%), Positives = 254/410 (61%), Gaps = 3/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD V W +MI G VRN   + AL  FR M    V P++ T   V+  C+ LGAL    WV
Sbjct: 212 KDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWV 271

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
            + + + +IELN  +  ALI+MYS+CG I  A+ VF+ ++  +V  +N+MI G A+HG +
Sbjct: 272 RSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKS 331

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F  +      P S+TF+G+L ACSH GL E G + F  M   Y I+PQ+EHYG 
Sbjct: 332 VEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGC 391

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE---VAIVNISRLM 240
           MVDLLGR G +EEAY  I  M + PD V+  ALLSAC+    LEL E    ++V      
Sbjct: 392 MVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVACKNAD 451

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G Y+LLSN Y    +W  A  VR  M+++G+ K  G S +E+   IH+F  GD  HP+ 
Sbjct: 452 SGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNEIHEFLLGDLRHPQK 511

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + I K L  L Q  + EG+ PATE+VL D+ + EKE  L  HSE+LA+ YG++ T P T 
Sbjct: 512 EKIYKKLEELNQILRLEGYTPATEVVLHDIEKSEKEWALAIHSERLAICYGLISTKPLTT 571

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           +R+ KNLR+C+DCH  IK+IS + RR I+VRDR RFH FE G+CSCGDYW
Sbjct: 572 LRVVKNLRVCNDCHLTIKLISNITRRKIVVRDRNRFHHFENGVCSCGDYW 621



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 117/238 (49%), Gaps = 30/238 (12%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + +V  + ++I G V +  + + +  + +M++S + PD +   SV+  C    AL     
Sbjct: 92  NPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGRE 151

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV------------- 109
           VH+ +++  +  N  +   LI++Y KCG  + A+ VFD +   DV               
Sbjct: 152 VHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGI 211

Query: 110 -----WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG--- 161
                W AMI G+  +G +  A  +F  M+  +V+P+ +T + +L+ACS  G ++ G   
Sbjct: 212 KDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWV 271

Query: 162 RKYFDHMRSRYSIQPQLEHY--GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           R Y D  R       +L H+  GA++++  R G I+EA  +   M  E +V+ + +++
Sbjct: 272 RSYMDKHRI------ELNHFVGGALINMYSRCGDIDEAQRVFEQMK-EKNVITYNSMI 322



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 94/249 (37%), Gaps = 61/249 (24%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
           L+ + S    I  A ++F   Q  +V ++ A+I G+ +     D   ++ +M   +++PD
Sbjct: 70  LLRVCSNLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPD 129

Query: 142 SITFLGLLTAC-----------------------------------SHCGLVEEGRKYFD 166
           S     +L AC                                     CG  E+ R+ FD
Sbjct: 130 SYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFD 189

Query: 167 HMRSR------YSIQPQLEH-------YGAMVDLLGRAGHIEEAYGLITSMTME---PDV 210
            M  R        I    +H       + AM+D L R G    A  +  +M  E   P+ 
Sbjct: 190 EMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNE 249

Query: 211 VVWRALLSACRTFKRLELG-------EVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENV 263
           V    +LSAC     L+LG       +   + ++  +GG    L NMY      D A+ V
Sbjct: 250 VTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGG---ALINMYSRCGDIDEAQRV 306

Query: 264 REIMKKKGV 272
            E MK+K V
Sbjct: 307 FEQMKEKNV 315



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 3/171 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +K+V+++NSMI GF  + +  EA+  FR ++     P   TF  V+  C+  G     
Sbjct: 310 MKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELG 369

Query: 61  YWV-HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
           + + H++  +  IE        ++D+  + G+++ A      ++   D  +  A++S   
Sbjct: 370 FEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACK 429

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169
           IHG    A  +   +       DS T++ L  A S  G  +E  +   +MR
Sbjct: 430 IHGNLELAERVAKSLVACKN-ADSGTYILLSNAYSSSGKWKEAAEVRTNMR 479


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/420 (44%), Positives = 274/420 (65%), Gaps = 10/420 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-----VEPDKFTFASVIYGCARLG 55
           MP+++V+SW+ +I G+V   ++ EAL  FREM   K     V P++FT ++V+  C RLG
Sbjct: 154 MPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLG 213

Query: 56  ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMI 114
           AL    WVH  I +  +E++ +L  ALIDMY+KCG ++ AK VF+ +  + DV  ++AMI
Sbjct: 214 ALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMI 273

Query: 115 SGVAIHGLAADASAIFTKMEMF-NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
             +A++GL  +   +F++M    N+ P+S+TF+G+L AC H GL+ EG+ YF  M   + 
Sbjct: 274 CCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFG 333

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI 233
           I P ++HYG MVDL GR+G I+EA   I SM MEPDV++W +LLS  R    ++  E A+
Sbjct: 334 ITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGAL 393

Query: 234 ---VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQF 290
              + +  +  G YVLLSN+Y    RW   + +R  M+ KG+ K  G S++E+ GV+H+F
Sbjct: 394 KRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEF 453

Query: 291 KAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAY 350
             GD S  E++ I  +L  ++QR +  G++  T+ VL+D++E++KE  L +HSEKLA+A+
Sbjct: 454 VVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAF 513

Query: 351 GILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            ++KT PGT +RI KNLRIC DCH  +KMIS+L  R I+VRD  RFH F  G CSC D+W
Sbjct: 514 CLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 103/248 (41%), Gaps = 40/248 (16%)

Query: 9   WNSMIGGFVRNARFDE---ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           WN +I   V N    +    +  +  M + +V PD  TF  ++        L      H 
Sbjct: 27  WNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHA 86

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
            I+   ++ +  +  +L++MYS CG ++ A+ VFD     D+  WN++++  A  GL  D
Sbjct: 87  QILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDD 146

Query: 126 ASAIFTKMEMFNVL------------------------------------PDSITFLGLL 149
           A  +F +M   NV+                                    P+  T   +L
Sbjct: 147 ARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVL 206

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
           +AC   G +E+G K+      +Y ++  +    A++D+  + G +E A  +  ++  + D
Sbjct: 207 SACGRLGALEQG-KWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKD 265

Query: 210 VVVWRALL 217
           V  + A++
Sbjct: 266 VKAYSAMI 273


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/413 (44%), Positives = 258/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVVSWN MIG F  + R  EA   F +M +   +PD   F S++  CA  GAL   
Sbjct: 291 MKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWV 350

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++  +E++  +  AL+ MYSK G I  A+ VFD ++  +V  WNAMISG+A H
Sbjct: 351 KKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQH 410

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  DA  +F +M    V PD +TF+ +L+ACSH GLV+EGR  +  M   Y I+P + H
Sbjct: 411 GLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSH 470

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI---VNIS 237
              MVDLLGRAG + EA   I +M ++PD   W ALL +CRT+  +ELGE+     + + 
Sbjct: 471 CNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLD 530

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 YVLLSN+Y    +WD    VR +M+++G+RK  G+SW+E+   IH F   D SH
Sbjct: 531 PKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSSH 590

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE + I++    +I++ K+EG++P T LVL + + ++KE ++  HSEKLA+ YG++ T P
Sbjct: 591 PECKEINESKDKVIEKIKAEGYIPDTRLVLKNKNMKDKELDICSHSEKLAIVYGLMHTPP 650

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH   K+IS++  R IIVRD  RFH F+ G+CSCGDYW
Sbjct: 651 GNPIRVFKNLRVCTDCHGATKLISKVEGREIIVRDANRFHHFKDGVCSCGDYW 703



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 113/217 (52%), Gaps = 2/217 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + D++SW  MIG + ++    EA R   +M     +P+  T+ S++  CA  GAL     
Sbjct: 192 NHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKR 251

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH   ++  +EL+  +  AL+ MY+K G I  A+ VFD ++  DV  WN MI   A HG 
Sbjct: 252 VHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGR 311

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F +M+     PD+I FL +L AC+  G +E  +K   H      ++  +    
Sbjct: 312 GHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDS-GLEVDVRVGT 370

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A+V +  ++G I++A  +   M +  +VV W A++S 
Sbjct: 371 ALVHMYSKSGSIDDARVVFDRMKVR-NVVSWNAMISG 406



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 116/262 (44%), Gaps = 43/262 (16%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K   SWN+MI G+V +   ++A+R FREM    V+P+  T+  ++  CA L AL     V
Sbjct: 92  KSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEV 151

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  I    +E +  +  AL+ MY KCG I  A+ +FD +  +D+  W  MI   A  G  
Sbjct: 152 HACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNG 211

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTAC------------------------------- 152
            +A  +  +ME     P++IT++ +L AC                               
Sbjct: 212 KEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTAL 271

Query: 153 ----SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME- 207
               +  G +++ R  FD M+ R  +      +  M+      G   EAY L   M  E 
Sbjct: 272 VQMYAKSGSIDDARVVFDRMKVRDVVS-----WNVMIGAFAEHGRGHEAYDLFLQMQTEG 326

Query: 208 --PDVVVWRALLSACRTFKRLE 227
             PD +++ ++L+AC +   LE
Sbjct: 327 CKPDAIMFLSILNACASAGALE 348



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 108/239 (45%), Gaps = 43/239 (17%)

Query: 22  FDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAA 81
             EA+      L   +  D F +  V+  C +   L  A  VH+ II+ ++E N  +   
Sbjct: 9   LSEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNN 68

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
           L+ +Y +CG++Q A+ VFD + +   + WNAMI+G   H  A DA  +F +M    V P+
Sbjct: 69  LLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPN 128

Query: 142 SITFLGLLTACS-----------------------------------HCGLVEEGRKYFD 166
           + T++ +L AC+                                    CG + E R+ FD
Sbjct: 129 AGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFD 188

Query: 167 HMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRT 222
           ++ +   I      +  M+    ++G+ +EAY L+  M  E   P+ + + ++L+AC +
Sbjct: 189 NLMNHDIIS-----WTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACAS 242


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/414 (43%), Positives = 263/414 (63%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++++V+W++MI G+ RN  F++A+  F  + +  V  ++     VI  CA LGAL   
Sbjct: 209 MPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMG 268

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H  ++  K+ LN IL  A++DMY++CG ++ A  VF+ +   DV  W A+I+G+A+H
Sbjct: 269 EKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMH 328

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A  A   F++M     +P  ITF  +LTACSH G+VE G + F+ M+  + ++P+LEH
Sbjct: 329 GYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEH 388

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDLLGRAG + +A   +  M ++P+  +WRALL ACR  K +E+GE     ++ + 
Sbjct: 389 YGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQ 448

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    +W     +R++MK KGVRK  G S +E+ G +H+F  GD++H
Sbjct: 449 PEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEFTIGDKTH 508

Query: 298 PEAQAIDKILGSLI-QRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           PE + I++I   +I  + K  G++  T   + D+ EEEKEG L+ HSEKLA+AYGI+K  
Sbjct: 509 PEIEKIERIWEDIILPKIKLAGYVGNTAETMFDIDEEEKEGALHRHSEKLAIAYGIMKIR 568

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             T IRI KNLR+C DCH+  K+IS++    +IVRDR RFH F+ G CSC DYW
Sbjct: 569 APTPIRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFHHFKEGTCSCMDYW 622



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 110/249 (44%), Gaps = 35/249 (14%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + ++  +N++I G   +   + +  ++ + L   + PD  T   ++  CA+L        
Sbjct: 79  NPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQ 138

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            H   I+   E +F +  +L+ MY+  G I  A+ VF  + R DV  W  MI+G    G 
Sbjct: 139 THGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGD 198

Query: 123 AADASAIFTKMEMFN-------------------------------VLPDSITFLGLLTA 151
           A  A  +F +M   N                               V+ +    +G++++
Sbjct: 199 AKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISS 258

Query: 152 CSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
           C+H G +  G K  ++ MR++ S+   L    A+VD+  R G++E+A  +   +  E DV
Sbjct: 259 CAHLGALAMGEKAHEYVMRNKLSLNLILG--TAVVDMYARCGNVEKAVMVFEQLP-EKDV 315

Query: 211 VVWRALLSA 219
           + W AL++ 
Sbjct: 316 LCWTALIAG 324


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/414 (45%), Positives = 257/414 (62%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D VS+ ++I G+V+N   +E LR F EM  S + P+K T ASV+  CA L  L++ 
Sbjct: 386 MDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYG 445

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H   I      + ++  ALIDMY+KCGKI  A++VFD + +  +  WN MI    IH
Sbjct: 446 SCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIH 505

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G+  +A  +F  M+   + PD +TF+ L++ACSH GLV EG+ +F+ M   + I P++EH
Sbjct: 506 GIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEH 565

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  MVDLL RAG  +E +  I  M +EPDV VW ALLSACR +K +ELGE     I +L 
Sbjct: 566 YACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLG 625

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD-RS 296
               G++VLLSNMY  + RWD A  VR   K++G  KS G SW+E++GV+H F  G  RS
Sbjct: 626 PESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRS 685

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+   I   L  L+   K  G+   +  V  DV EEEKE  L +HSEKLA+A+GIL  S
Sbjct: 686 HPQLTQISNKLDELLVEMKRLGYQAESSYVFQDVEEEEKERVLLYHSEKLAIAFGILSLS 745

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           P   I ++KNLR+C DCH+ IK IS + +R I VRD  RFH F+ G+C+CGD+W
Sbjct: 746 PDKHIIVTKNLRVCGDCHTAIKFISLVTKRDITVRDASRFHHFKDGICNCGDFW 799



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 115/221 (52%), Gaps = 3/221 (1%)

Query: 1   MP--DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALN 58
           MP   K+VV WN +I  +  N  ++EA+  + +ML   + P++FTF  V+  C+ L   +
Sbjct: 77  MPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEAS 136

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H  I   ++E N  +S AL+D Y+KCG +  AKEVFD + + DV  WN+MISG +
Sbjct: 137 EGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFS 196

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +H  + D  A        +V P+S T +G+L A +    +  G++       R  +   +
Sbjct: 197 LHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVV 256

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              G ++D+ G+   I+ A  +   M +  + V W A++ A
Sbjct: 257 VGTG-ILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGA 296



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 110/258 (42%), Gaps = 46/258 (17%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSK---VEPDKFTFASVIYGCARLGALNHA 60
           K+ V+W++M+G +V      EAL  F ++L  K   +     T A+VI  CA L  L+  
Sbjct: 285 KNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTG 344

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   I+    L+ ++   L+ MY+KCG I  A   F+ +   D   + A+ISG   +
Sbjct: 345 TCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQN 404

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSH-------------------------- 154
           G + +   +F +M++  + P+  T   +L AC+H                          
Sbjct: 405 GNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMIC 464

Query: 155 ---------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
                    CG ++  RK FD M  R  +      +  M+   G  G   EA  L  +M 
Sbjct: 465 NALIDMYAKCGKIDTARKVFDRMHKRGIVS-----WNTMIIAYGIHGIGLEALLLFDNMQ 519

Query: 206 ME---PDVVVWRALLSAC 220
            E   PD V +  L+SAC
Sbjct: 520 SEGLKPDDVTFICLISAC 537



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 135/320 (42%), Gaps = 55/320 (17%)

Query: 1   MPDKDVVSWNSMIGGF-VRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           M  +DVV+WNSMI GF +    +DE  R   +M  + V P+  T   V+   A++ +L H
Sbjct: 180 MHKRDVVAWNSMISGFSLHEGSYDEVARLLVQM-QNDVSPNSSTIVGVLPAVAQVNSLRH 238

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT--VQRNDVSVWNAMISGV 117
              +H   + +    + ++   ++D+Y KC  I  A+ +FD   + +N+V+ W+AM+   
Sbjct: 239 GKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVT-WSAMVGAY 297

Query: 118 AIHGLAADASAIFTKMEMFN---VLPDSITFLGLLTACSH-------------------- 154
            +     +A  +F ++ M     ++  ++T   ++  C++                    
Sbjct: 298 VVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFV 357

Query: 155 ---------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199
                          CG++    ++F+ M  R ++      + A++    + G+ EE   
Sbjct: 358 LDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVS-----FTAIISGYVQNGNSEEGLR 412

Query: 200 LITSMTM---EPDVVVWRALLSACRTFKRLELGEVA-IVNISRLMGGDYVL---LSNMYC 252
           +   M +    P+     ++L AC     L  G  +    I      D ++   L +MY 
Sbjct: 413 MFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYA 472

Query: 253 YLKRWDTAENVREIMKKKGV 272
              + DTA  V + M K+G+
Sbjct: 473 KCGKIDTARKVFDRMHKRGI 492



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 4/140 (2%)

Query: 82  LIDMYSKCGKIQMAKEVFDTV--QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVL 139
           L+D+Y  C ++++A+ VFD +  +  +V +WN +I   A +G   +A  ++ KM  + + 
Sbjct: 57  LVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGIT 116

Query: 140 PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199
           P+  TF  +L ACS      EGR+    ++ R  ++  +    A+VD   + G +++A  
Sbjct: 117 PNRFTFPFVLKACSALKEASEGREIHCDIK-RLRLESNVYVSTALVDFYAKCGCLDDAKE 175

Query: 200 LITSMTMEPDVVVWRALLSA 219
           +   M  + DVV W +++S 
Sbjct: 176 VFDKMH-KRDVVAWNSMISG 194


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/411 (45%), Positives = 256/411 (62%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K + SWN+MI G  +N   D A+  F+ M  + V P+  T  S++  CA++GAL+   W
Sbjct: 195 EKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEW 254

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH+LI   + E N  +S ALIDMY+KCG I +A+E+FD +   +   WNAMISG  +HG 
Sbjct: 255 VHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGH 314

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F  M   +V P  +TFL +L ACSH GLV+EG   F  M   +  +P  EHY 
Sbjct: 315 GQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYA 374

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG- 241
            MVD+LGRAG +++A   I +M +EP   VW ALL AC   K   L  VA   +  L   
Sbjct: 375 CMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTNLAHVASEKLFELDPE 434

Query: 242 --GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             G YVL+SN+Y   +++  A +VR++ KKK + K+ G + +E+  V H F +GD+SHP+
Sbjct: 435 NIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQSHPQ 494

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           ++AI   L  L  +    GF   T  VL D+ EEEKE  +  HSEKLA+A+G++ T PG 
Sbjct: 495 SKAIYAELDKLTGKMTEAGFQTETTTVLHDLEEEEKELTMKVHSEKLAIAFGLISTEPGA 554

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           EIRI KNLR+C DCH+W K +S++ +RVI+VRD  RFH F+ GLCSCGDYW
Sbjct: 555 EIRIIKNLRVCLDCHNWTKFLSKITKRVIVVRDANRFHHFKDGLCSCGDYW 605



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 110/219 (50%), Gaps = 8/219 (3%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW- 62
           KD++S N+MI GF  N   ++++R F+E+LSS       T   +I   +  G   H+Y  
Sbjct: 95  KDLISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSSTIVGLIPVYSPFG---HSYLC 151

Query: 63  --VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++  I  +  +S AL  +Y +  ++  A+++FD      ++ WNAMISG   +
Sbjct: 152 NCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQN 211

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL   A ++F  M+  NV P+ +T   +L+AC+  G +  G      ++S    +  +  
Sbjct: 212 GLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSN-RFESNVYV 270

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++D+  + G I  A  L   M  E + V W A++S 
Sbjct: 271 STALIDMYAKCGSITVARELFDLMP-EKNEVTWNAMISG 308



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 128/302 (42%), Gaps = 48/302 (15%)

Query: 12  MIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEK 70
           MI GFV+N+ F++++R F +M L +    D  T  +V+   A L  L     +  L I+ 
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 71  KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIF 130
               +  L   LI ++SKCG++++A+ +F  +++ D+   NAMISG   +G   D+  +F
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 131 TKMEMFNVLPDSITFLGLLTA----------------CSHCGLVEE-------------- 160
            ++        S T +GL+                  C   G+V                
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRL 180

Query: 161 -----GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM---TMEPDVVV 212
                 R+ FD      S +  L  + AM+    + G  + A  L  +M    + P+ V 
Sbjct: 181 NEMIFARQLFDE-----SAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVT 235

Query: 213 WRALLSACRTFKRLELGE--VAIVNISRLMGGDYV--LLSNMYCYLKRWDTAENVREIMK 268
             ++LSAC     L LGE   +++  +R     YV   L +MY        A  + ++M 
Sbjct: 236 VTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMP 295

Query: 269 KK 270
           +K
Sbjct: 296 EK 297



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 10/155 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K+ V+WN+MI G+  +    EAL+ F +MLSS V+P   TF SV+Y C+  G +   
Sbjct: 294 MPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEG 353

Query: 61  YWV-HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             + H ++ +   E      A ++D+  + G+++ A E    +       VW A++    
Sbjct: 354 DGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACM 413

Query: 119 IH---GLAADASAIFTKMEMFNVLPDSITFLGLLT 150
           IH    LA  AS      ++F + P++I +  L++
Sbjct: 414 IHKDTNLAHVASE-----KLFELDPENIGYYVLMS 443


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/417 (47%), Positives = 266/417 (63%), Gaps = 7/417 (1%)

Query: 1   MPD----KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA 56
           MP+    KD V W +MI GFVRN   + AL  FR M    V P++FT   V+  C++LGA
Sbjct: 191 MPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGA 250

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
           L    WVH+ + + +IELN  +  ALI+MYS+CG I  A+ VFD ++  DV  +N MISG
Sbjct: 251 LEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISG 310

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
           ++++G +  A  +F  M    + P ++TF+G+L ACSH GLV+ G K F  M   Y ++P
Sbjct: 311 LSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEP 370

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE-VAIVN 235
           Q+EHYG MVDLLGR G +EEAY LI +M M PD ++   LLSAC+  K LELGE VA V 
Sbjct: 371 QIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVL 430

Query: 236 ISRLMG--GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
             R     G YVLLS++Y    +W  A  VR  MK+ G++K  G S +E+   IH+F  G
Sbjct: 431 EDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLG 490

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           D  HP  + I + L  L +  + EG+ P  E+VL D+ + EKE  L  HSE+LA+ YG++
Sbjct: 491 DLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGLI 550

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T P T IR+ KNLR+C+DCHS IK+I+++ RR ++VRDR RFH FE G CSCGDYW
Sbjct: 551 STEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 607



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 113/221 (51%), Gaps = 6/221 (2%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + +V  + ++I GFV +  + +A++ +  ML   + PD +  AS++  C    AL     
Sbjct: 92  NPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGRE 151

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN----DVSVWNAMISGVA 118
           VH+  ++  +  N ++   ++++Y KCG++  A+ VF+ +  +    D   W AMI G  
Sbjct: 152 VHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFV 211

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            +     A   F  M+  NV P+  T + +L+ACS  G +E GR    +MR ++ I+  L
Sbjct: 212 RNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMR-KFEIELNL 270

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               A++++  R G I+EA  +   M  + DV+ +  ++S 
Sbjct: 271 FVGNALINMYSRCGSIDEAQTVFDEMK-DRDVITYNTMISG 310



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 6/167 (3%)

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
           +N    +H  +I      +  +   L+   SKC  I  A  +F      +V ++ A+I G
Sbjct: 45  INQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDG 104

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQ 175
               G   DA  ++++M   ++LPD+     +L AC     + EGR+   H R+ +  + 
Sbjct: 105 FVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREV--HSRALKLGLS 162

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSM---TMEPDVVVWRALLSA 219
                   +++L G+ G + +A  +   M    +  D V W A++  
Sbjct: 163 SNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDG 209


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/410 (46%), Positives = 262/410 (63%), Gaps = 3/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD V W +MI GFVRN   + AL  FR M    V P++FT   V+  C++LGAL    WV
Sbjct: 241 KDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWV 300

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H+ + + +IELN  +  ALI+MYS+CG I  A+ VFD ++  DV  +N MISG++++G +
Sbjct: 301 HSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKS 360

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  +F  M    + P ++TF+G+L ACSH GLV+ G + F  M   Y ++PQ+EHYG 
Sbjct: 361 RQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGC 420

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNIS---RLM 240
           MVDLLGR G +EEAY LI +M M PD ++   LLSAC+  K LELGE     +    +  
Sbjct: 421 MVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQAD 480

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G YVLLS++Y    +W  A  VR  MK+ G++K  G S +E+   IH+F  GD  HP+ 
Sbjct: 481 SGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQK 540

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + I + L  L +  + EG+ P  E+VL D+ + EKE  L  HSE+LA+ YG++ T P T 
Sbjct: 541 ERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLISTEPCTM 600

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IR+ KNLR+C+DCHS IK+I+++ RR I+VRDR RFH FE G CSCGDYW
Sbjct: 601 IRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 650



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 113/247 (45%), Gaps = 32/247 (12%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + +V  + ++I GFV +  + EA++ +  ML   + PD +  AS++  C    AL     
Sbjct: 109 NPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGRE 168

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT--------------------- 101
           VH+  ++     N ++   ++++Y KCG++  A+ VF+                      
Sbjct: 169 VHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLV 228

Query: 102 ---------VQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC 152
                    V+R D   W AMI G   +     A   F  M+  NV P+  T + +L+AC
Sbjct: 229 EEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSAC 288

Query: 153 SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
           S  G +E GR    +MR ++ I+  L    A++++  R G I+EA  +   M  + DV+ 
Sbjct: 289 SQLGALEIGRWVHSYMR-KFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMK-DRDVIT 346

Query: 213 WRALLSA 219
           +  ++S 
Sbjct: 347 YNTMISG 353



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D+DV+++N+MI G   N +  +A+  FR M+  ++ P   TF  V+  C+  G ++  
Sbjct: 339 MKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFG 398

Query: 61  YWV-HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN-DVSVWNAMISGVA 118
           + + H++  + ++E        ++D+  + G+++ A ++  T++   D  +   ++S   
Sbjct: 399 FEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACK 458

Query: 119 IH 120
           +H
Sbjct: 459 MH 460



 Score = 45.4 bits (106), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 48/107 (44%)

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
           +N    +H  +I      +  +   L+   SKC  I  A  +F      +V ++ A+I G
Sbjct: 62  INQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDG 121

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
               G   +A  ++++M   ++LPD+     +L AC     + EGR+
Sbjct: 122 FVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGRE 168


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/415 (42%), Positives = 270/415 (65%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           M ++D+VSWN MI G+ ++   ++AL  F+++L+  K +PD+ T  + +  C+++GAL  
Sbjct: 218 MCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALET 277

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             W+H  +   +I LN  +   LIDMYSKCG ++ A  VF+   R D+  WNAMI+G A+
Sbjct: 278 GRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAM 337

Query: 120 HGLAADASAIFTKMEMFNVL-PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           HG + DA  +F +M+    L P  ITF+G L AC+H GLV EG + F+ M   Y I+P++
Sbjct: 338 HGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKI 397

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG-EVA--IVN 235
           EHYG +V LLGRAG ++ AY  I +M M+ D V+W ++L +C+      LG E+A  ++ 
Sbjct: 398 EHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIG 457

Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           ++    G YVLLSN+Y  +  ++    VR +MK+KG+ K  G S +E+   +H+F+AGDR
Sbjct: 458 LNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDR 517

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
            H +++ I  +L  + +R KS G++P T  VL D+ E EKE +L  HSE+LA+AYG++ T
Sbjct: 518 EHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLIST 577

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            PG+ ++I KNLR+C DCH+  K+IS++  R I++RDR RFH F  G CSCGD+W
Sbjct: 578 KPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 119/245 (48%), Gaps = 30/245 (12%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA-RLGALNHAY 61
           D D+  + + I     N   D+A   + ++LSS++ P++FTF+S++  C+ + G L H +
Sbjct: 92  DPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKSGKLIHTH 151

Query: 62  WVH--------------------------NLIIEKKIELNFILSAALIDMYSKCGKIQMA 95
            +                             + ++  E + + S A+I  Y+K G ++ A
Sbjct: 152 VLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAA 211

Query: 96  KEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTK-MEMFNVLPDSITFLGLLTACSH 154
           + +FD++   D+  WN MI G A HG   DA  +F K +      PD IT +  L+ACS 
Sbjct: 212 RALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQ 271

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
            G +E GR     ++S   I+  ++    ++D+  + G +EEA  L+ + T   D+V W 
Sbjct: 272 IGALETGRWIHVFVKSS-RIRLNVKVCTGLIDMYSKCGSLEEAV-LVFNDTPRKDIVAWN 329

Query: 215 ALLSA 219
           A+++ 
Sbjct: 330 AMIAG 334



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 40/185 (21%)

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           HNL++  +     +L+  L   Y+  GKI+ +  +F      D+ ++ A I+  +I+GL 
Sbjct: 55  HNLLLHPRYP---VLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLK 111

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSH----------------------CGLVE-- 159
             A  ++ ++    + P+  TF  LL +CS                        GLV+  
Sbjct: 112 DQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKSGKLIHTHVLKFGLGIDPYVATGLVDVY 171

Query: 160 -------EGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
                    +K FD M  R      L    AM+    + G++E A  L  SM  E D+V 
Sbjct: 172 AKGGDVVSAQKVFDRMPER-----SLVSSTAMITCYAKQGNVEAARALFDSMC-ERDIVS 225

Query: 213 WRALL 217
           W  ++
Sbjct: 226 WNVMI 230


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/409 (45%), Positives = 265/409 (64%), Gaps = 4/409 (0%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           VVS+N++I G+ R++R +EAL  FR++ + K++P+  T  SV+  CA LGAL+   W+H 
Sbjct: 193 VVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHE 252

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
            + +  ++    ++ ALIDMY+KCG +  A  VF+++   D   W+AMI   A+HG   D
Sbjct: 253 YVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQD 312

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
             ++F +M    V PD ITFLGLL ACSH GLV+EG +YF  M   Y I P ++HYG MV
Sbjct: 313 VMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMV 372

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---MGG 242
           DLLGRAG + EAY  I  + ++P  ++WR LLS+C +   LEL +  +  I  L    GG
Sbjct: 373 DLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSHGG 432

Query: 243 DYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQA 302
           DYV+LSN+     +W+  + +R++M  KG  K  G S +E+  V+H+F +GD  H  + A
Sbjct: 433 DYVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGDGVHYVSTA 492

Query: 303 IDKILGSLIQRTKSEGFLPATELVL-MDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
           + + L  L++  KS G++P T LV+  D+ +EEKE  L +HSEKLA+++G+L T PGT I
Sbjct: 493 LHRALDELVKELKSVGYVPDTSLVVHPDMEDEEKEITLRYHSEKLAISFGLLNTPPGTTI 552

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           R+ KNLR+C DCHS  K+IS L+ R II+RD  RFH F+ G CSCGDYW
Sbjct: 553 RVVKNLRVCGDCHSAAKLISSLIDREIILRDVQRFHHFKDGKCSCGDYW 601



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 116/219 (52%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  D+V +NSM  G+ R+    +A+  F + L+  + PD +TF S++  C    A    
Sbjct: 87  IPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAKAFQQG 146

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L I+  +  N  +   LI+MY+ C  +  A+ VFD +    V  +NA+I+G A  
Sbjct: 147 KQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGYARS 206

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A ++F +++   + P+ +T L +L++C+  G ++ G+   ++++ +  +   ++ 
Sbjct: 207 SRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVK-KNGLDKYVKV 265

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++D+  + G ++ A  +  SM++  D   W A++ A
Sbjct: 266 NTALIDMYAKCGSLDGAISVFESMSVR-DTQAWSAMIVA 303



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 117/292 (40%), Gaps = 54/292 (18%)

Query: 43  TFASVIYGC-ARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSK---CGKIQMAKEV 98
           T+ S +  C  +  +L     +    I+  ++ +  +   LI+  ++      +  A ++
Sbjct: 24  TYPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAHQL 83

Query: 99  FDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC------ 152
           F+ + + D+ ++N+M  G +       A ++F K   +N+LPD  TF  LL AC      
Sbjct: 84  FEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAKAF 143

Query: 153 -----------------------------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
                                        + C  V+  ++ FD +     ++P +  Y A
Sbjct: 144 QQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEI-----LEPCVVSYNA 198

Query: 184 MVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           ++    R+    EA  L   +    ++P+ V   ++LS+C     L+LG+     + +  
Sbjct: 199 IITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNG 258

Query: 241 GGDYV----LLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIH 288
              YV     L +MY      D A +V E M    VR +Q  S + +A  +H
Sbjct: 259 LDKYVKVNTALIDMYAKCGSLDGAISVFESM---SVRDTQAWSAMIVAYAMH 307



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D  +W++MI  +  + +  + +  F EM  +KV+PD+ TF  ++Y C+  G ++  
Sbjct: 289 MSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEG 348

Query: 61  Y-WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV-WNAMISGVA 118
           + + +++     I         ++D+  + G +  A +  D +      + W  ++S  +
Sbjct: 349 FRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCS 408

Query: 119 IHG 121
            HG
Sbjct: 409 SHG 411


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/413 (46%), Positives = 259/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K+++SWN MI  +V N+  +EA+  F +M    ++PD  T AS++  C  L AL   
Sbjct: 266 MTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLG 325

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I +  +  N +L  AL+DMY+KCG ++ A++VFD ++  DV  W +M+S     
Sbjct: 326 RRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRS 385

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA A+F KM      PDSI F+ +L+ACSH GL+++GR YF  M  +Y I P++EH
Sbjct: 386 GQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEH 445

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           +  MVDL GRAG +EEAY  I  M MEP+  VW ALLSACR   ++++G VA   +  ++
Sbjct: 446 FACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLA 505

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y     W    NVR  MKK G++K  G S +EL G +H F AGD+ H
Sbjct: 506 PKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYH 565

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+A+ I   L  L+ + K  G++P TE  L DV  E+KE +L  HSEKLA+ + IL T  
Sbjct: 566 PQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQ 625

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IRI+KNLR+C DCH  IK+IS+++ R IIVRD  RFH F  G+CSCGDYW
Sbjct: 626 GTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 113/230 (49%), Gaps = 6/230 (2%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K+VV +N MI  +V N  + EAL  F+ MLS    PD +TF  V+  C+ L  L     
Sbjct: 99  EKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQ 158

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH+ I++  ++ N  +  AL+ MY KCG ++ A++V D +   DV  WN+M++G A  G 
Sbjct: 159 VHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQ 218

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             DA  I  +M+  N+  D+ T   L     +  L  E  +Y  +M  R + +  L  + 
Sbjct: 219 FDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSL--ENVQYIHNMFERMT-KKNLISWN 275

Query: 183 AMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELG 229
            M+ +        EA  L   M    M+PD V   +LL AC     L LG
Sbjct: 276 VMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLG 325



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 26/222 (11%)

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
           ++I + + ++  L+  L+  YS  G+  +A+ +FD     +V  +N MI     + L  +
Sbjct: 61  IVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVE 120

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           A +IF  M      PD  TF  +L ACS    +  G +  D +  +  +   L    A+V
Sbjct: 121 ALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAI-VKVGLDTNLFIGNALV 179

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRAL-------------LSACRTFKRLELGEVA 232
            + G+ G + EA  ++  M    DVV W ++             L  C+    L L   A
Sbjct: 180 AMYGKCGCLREARKVLDQMPYR-DVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDA 238

Query: 233 IVNISRLMGGDYVLLSNMYCY--LKRWDTAENVREIMKKKGV 272
                    G    LS + CY  L+      N+ E M KK +
Sbjct: 239 ---------GTMASLSPVVCYTSLENVQYIHNMFERMTKKNL 271


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/415 (44%), Positives = 264/415 (63%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + +KDV+SWN++IGG+     + EAL  F++ML S  +P+  T  S++  CA LGA++  
Sbjct: 296 LSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIG 355

Query: 61  YWVHNLIIE--KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
            W+H  I +  K +     L  +LIDMY+KCG I+ A++VFD++    +S WNAMI G A
Sbjct: 356 RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFA 415

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG A  A  IF++M    + PD ITF+GLL+ACSH G+++ GR  F  M   Y + P+L
Sbjct: 416 MHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKL 475

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           EHYG M+DL G +G  +EA  +I +M MEPD V+W +LL AC+    +ELGE    N+ +
Sbjct: 476 EHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIK 535

Query: 239 L---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           +     G YVLLSN+Y   +RW+     R ++  KG++K  G S +E+  V+H+F  GD+
Sbjct: 536 IEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDK 595

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
            HP  + I  +L  +    +  GF+P T  VL ++ EE KEG L HHSEKLA+A+G++ T
Sbjct: 596 FHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLIST 655

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            PGT++ I KNLR+C +CH   K+IS++ +R II RDR RFH F  G CSC DYW
Sbjct: 656 KPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGECSCNDYW 710



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 133/293 (45%), Gaps = 49/293 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KDVVSWN+ I G+     + EAL  F++M+ + V PD+ T  +V+  CA+ G++   
Sbjct: 195 IPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELG 254

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ I +     N  +  ALID+YSKCG+++ A  +F  +   DV  WN +I G    
Sbjct: 255 RQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHM 314

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSH-------------------------- 154
            L  +A  +F  M      P+ +T L +L+AC+H                          
Sbjct: 315 NLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASS 374

Query: 155 -----------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
                      CG +E  ++ FD M +R      L  + AM+      G    A+ + + 
Sbjct: 375 LRTSLIDMYAKCGDIEAAQQVFDSMLNR-----SLSSWNAMIFGFAMHGRANAAFDIFSR 429

Query: 204 MT---MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCY 253
           M    +EPD + +  LLSAC     L+LG     +I R M  DY L+  +  Y
Sbjct: 430 MRKNGIEPDDITFVGLLSACSHSGMLDLGR----HIFRSMTRDYKLMPKLEHY 478



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 110/240 (45%), Gaps = 33/240 (13%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           WN+M  G   ++    AL+ +  M+S  + P+ +TF  ++  CA+  A      +H  ++
Sbjct: 71  WNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVL 130

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEV------------------------------ 98
           +   +L+  +  +LI MY + G+++ A++V                              
Sbjct: 131 KFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHK 190

Query: 99  -FDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL 157
            FD +   DV  WNA ISG A  G   +A  +F KM   NV PD  T + +L+AC+  G 
Sbjct: 191 MFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGS 250

Query: 158 VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           +E GR+    +   +     L+   A++DL  + G +E A GL   ++   DV+ W  L+
Sbjct: 251 IELGRQVHSWIND-HGFGXNLKIVNALIDLYSKCGELETACGLFQGLS-NKDVISWNTLI 308



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 81/176 (46%), Gaps = 6/176 (3%)

Query: 46  SVIYGCARLGALN--HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           S+++ C  L +L   HA  +   +      L+ +L   ++  +     +  A  VFDT+Q
Sbjct: 7   SLLHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFD--GLPYAISVFDTIQ 64

Query: 104 RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
              + +WN M  G A+      A  ++  M    +LP+S TF  LL +C+     +EG++
Sbjct: 65  EPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQ 124

Query: 164 YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               +  ++     L  + +++ +  + G +E+A   +   +   DVV + AL++ 
Sbjct: 125 LHGQVL-KFGFDLDLYIHTSLISMYVQNGRLEDAQK-VXDKSSHRDVVSYTALITG 178


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/416 (45%), Positives = 264/416 (63%), Gaps = 9/416 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D VSW +MI G+V+ ARF EAL  FREM  S V  D+FT  SVI  CA+LGAL   
Sbjct: 237 MPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMG 296

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WV   +  + I+++  +  ALIDMYSKCG I+ A +VF  +   D   W A+I G+A++
Sbjct: 297 EWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVN 356

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M   +  PD +TF+G+LTAC+H GLV++GR++F  MR  Y+I P + H
Sbjct: 357 GYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVH 416

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG ++DL GRAG I EA   I  M M P+  +W  LL+ACR     E+GE+      RL+
Sbjct: 417 YGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELV---TERLL 473

Query: 241 GGD------YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294
             D      Y LLSN+Y    RW+    +R  + +KG++K  G S +E+ G+IH+F AGD
Sbjct: 474 QMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMNGIIHEFVAGD 533

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
           +SHP ++ I   L S+I    + G+ P    V ++V+EEEK+  L+ HSEKLA+A+ +L 
Sbjct: 534 QSHPMSKEIYCKLESIINDLNNVGYFPDVTEVFVEVAEEEKQKVLFWHSEKLAIAFALLS 593

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + P T IRI KNLR+C DCH+ IK+ISRL  R ++VRDR RFH F  G CSC DYW
Sbjct: 594 SEPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 649



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 107/243 (44%), Gaps = 34/243 (13%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCAR-LGALNHAYWVHN 65
           V WN++I G  R  RF EA   F +M  +   P   T+ SV+  C +  G +     VH 
Sbjct: 110 VVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHG 169

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
            ++   +  +  +  AL+DMY++C  ++ A ++FD +Q   V  W +++SG+   G   +
Sbjct: 170 RVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDE 229

Query: 126 ASAIFTKM-------------------------EMF------NVLPDSITFLGLLTACSH 154
           A  +F +M                         EMF      NV  D  T + ++TAC+ 
Sbjct: 230 ARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQ 289

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
            G +E G     +M SR  I+       A++D+  + G IE A  +   M    D   W 
Sbjct: 290 LGALEMGEWVRVYM-SRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHR-DKFTWT 347

Query: 215 ALL 217
           A++
Sbjct: 348 AII 350



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 5/207 (2%)

Query: 23  DEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAAL 82
           ++A+  +  ML+    PD +TF  ++   AR  +      VH  +++  +  N  ++ +L
Sbjct: 25  EDAVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSL 84

Query: 83  IDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDS 142
           +  Y+  G    A+ +    +R+   VWNA+ISG        +A   F  M      P  
Sbjct: 85  VTAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTP 144

Query: 143 ITFLGLLTACSH-CGLVEEGRKYFDHMRSRYS-IQPQLEHYGAMVDLLGRAGHIEEAYGL 200
           +T++ +L+AC    G V  G +   H R   S + P L    A+VD+      +E A+ L
Sbjct: 145 VTYVSVLSACGKGTGDVLLGMQV--HGRVVGSGVLPDLRVENALVDMYAECADMESAWKL 202

Query: 201 ITSMTMEPDVVVWRALLSACRTFKRLE 227
              M +   VV W +LLS      R++
Sbjct: 203 FDGMQVR-SVVSWTSLLSGLTRLGRVD 228


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/417 (46%), Positives = 266/417 (63%), Gaps = 11/417 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD VS+++++ G+V+N R +EA   F++M +  VEPD  T  S+I  C+ L AL H 
Sbjct: 401 MAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHG 460

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H  +I + +     +  ALIDMY+KCG+I ++++VF+ +   D+  WN MI+G  IH
Sbjct: 461 RCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIH 520

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A+A+F +M      PD +TF+ LL+ACSH GLV EG+ +F  MR  Y + P++EH
Sbjct: 521 GLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEH 580

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MVDLL R G ++EAY  I SM +  DV VW ALL ACR +K ++LG+     +SR++
Sbjct: 581 YICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGK----KVSRMI 636

Query: 241 -------GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
                   G++VLLSN+Y    R+D A  VR I K +G +KS G SW+E+ G +H F  G
Sbjct: 637 QELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGG 696

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           D+SHP++  I + L +++   K  G+ P T  VL D+ EEEKE  L  HSEKLA+AYGIL
Sbjct: 697 DQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGIL 756

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             S    I ++KNLR+C DCH+ IK IS L RR IIVRD  RFH F+ G CSCGD+W
Sbjct: 757 SLSEDKTIFVTKNLRVCGDCHTVIKHISLLKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 113/221 (51%), Gaps = 7/221 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKV---EPDKFTFASVIYGCARLGAL 57
           MP ++ V+W+++IGGFV  +R  +A   F+ ML+  +    P   + AS +  CA L  L
Sbjct: 299 MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASLDHL 356

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
                +H L+ +  +  +     +L+ MY+K G I  A  +FD +   D   ++A++SG 
Sbjct: 357 RMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGY 416

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
             +G A +A  +F KM+  NV PD+ T + L+ ACSH   ++ GR     +  R  +  +
Sbjct: 417 VQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASE 475

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
                A++D+  + G I+ +  +   M    D+V W  +++
Sbjct: 476 TSICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIA 515



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 4/165 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEA--LRFFREMLSSKVEPDKFTFASVIYGCARLGALN 58
           +P  DV ++N +I  +  ++    A  L  +R ML  +V P+ +TF   +  C+ L   +
Sbjct: 83  IPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKACSALADHH 142

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H   I   ++ +  +S AL+DMY KC  +  A  +F T+   D+  WNAM++G A
Sbjct: 143 CGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYA 202

Query: 119 IHGLAADASA--IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG 161
            HG+   A A  +  +M+M  + P++ T + LL   +  G + +G
Sbjct: 203 HHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQG 247



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 132/327 (40%), Gaps = 60/327 (18%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFF--REMLSSKVEPDKFTFASVIYGCARLGALN 58
           MP +D+V+WN+M+ G+  +  +  A+      +M   ++ P+  T  +++   A+ GAL 
Sbjct: 186 MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALA 245

Query: 59  HAYWVHNLII----------EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS 108
               VH   I          + K+    +L  AL+DMY+KCG +  A+ VFD +   +  
Sbjct: 246 QGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV 305

Query: 109 VWNAMISGVAIHGLAADASAIFTKM-----------------------------EMFNVL 139
            W+A+I G  +      A  +F  M                             E  + L
Sbjct: 306 TWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHAL 365

Query: 140 -------PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAG 192
                   D      LL+  +  GL+++    FD M  + ++      Y A+V    + G
Sbjct: 366 LAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS-----YSALVSGYVQNG 420

Query: 193 HIEEAYGLITSM---TMEPDVVVWRALLSACRTFKRLELGEVAIVN-ISRLMGGDYVL-- 246
             EEA+ +   M    +EPD     +L+ AC     L+ G  +  + I R +  +  +  
Sbjct: 421 RAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICN 480

Query: 247 -LSNMYCYLKRWDTAENVREIMKKKGV 272
            L +MY    R D +  V  +M  + +
Sbjct: 481 ALIDMYAKCGRIDLSRQVFNMMPSRDI 507


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/414 (43%), Positives = 264/414 (63%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP + +V+WNSMI G+ +N   +EA+  F +M  S+VEPD  TF SV+  C++LG+L+  
Sbjct: 169 MPQRSIVAWNSMISGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFG 228

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H+ I+   I +N +L+ +L++M+S+CG +  A+ VF ++   +V +W AMISG  +H
Sbjct: 229 CWLHDCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMH 288

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M+   V+P+S+TF+ +L+AC+H GL++EGR  F  M+  Y + P +EH
Sbjct: 289 GYGVEAMEVFHRMKARGVVPNSVTFVAVLSACAHAGLIDEGRSVFASMKQEYGVVPGVEH 348

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDV-VVWRALLSACRTFKRLELG-EVA--IVNI 236
           +  MVD+ GR G + EAY  +  +  +  V  VW A+L AC+  K  +LG EVA  ++N 
Sbjct: 349 HVCMVDMFGRGGLLNEAYQFVKGLNSDELVPAVWTAMLGACKMHKNFDLGVEVAENLINA 408

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVLLSNMY    R D  E+VR +M ++G++K  G S +++    + F  GD+S
Sbjct: 409 EPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVDNRSYLFSMGDKS 468

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HPE   I   L  LI R K  G+ P  E  + ++  EE+E  L +HSEKLA+A+G++KT 
Sbjct: 469 HPETNEIYCFLDELIWRCKDAGYAPVPESAMHELEGEEREYALRYHSEKLAVAFGLMKTG 528

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  +RI KNLRIC DCHS IK IS ++ R IIVRD++RFH F  G CSC DYW
Sbjct: 529 DGVTLRIVKNLRICEDCHSAIKFISAVMNREIIVRDKLRFHHFREGSCSCSDYW 582



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 116/219 (52%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + D D   +NS+I    +     +A+ F+R ML S++ P  +TF SVI  CA L  L   
Sbjct: 68  VSDPDSFLFNSLIKASSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSLLCIG 127

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ +       +  + AALI  Y+K    ++A++VFD + +  +  WN+MISG   +
Sbjct: 128 TLVHSHVFVSGYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQN 187

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GLA +A  +F KM    V PDS TF+ +L+ACS  G ++ G    D +     I   +  
Sbjct: 188 GLANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGS-GITMNVVL 246

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             ++V++  R G +  A  +  SM +E +VV+W A++S 
Sbjct: 247 ATSLVNMFSRCGDVGRARAVFYSM-IEGNVVLWTAMISG 284



 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 43/186 (23%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
           L+ +    G I   + +F +V   D  ++N++I   +  G + DA   + +M +  ++P 
Sbjct: 48  LLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKASSKFGFSLDAVLFYRRMLLSRIVPS 107

Query: 142 SITFLGLLTACSHCGLVEEG-----------------------------------RKYFD 166
           + TF  ++ AC+   L+  G                                   RK FD
Sbjct: 108 TYTFTSVIKACADLSLLCIGTLVHSHVFVSGYASDSFVQAALIAFYAKSCTPRVARKVFD 167

Query: 167 HMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM---TMEPDVVVWRALLSACRTF 223
            M  R  +      + +M+    + G   EA  +   M    +EPD   + ++LSAC   
Sbjct: 168 EMPQRSIVA-----WNSMISGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQL 222

Query: 224 KRLELG 229
             L+ G
Sbjct: 223 GSLDFG 228


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/413 (44%), Positives = 265/413 (64%), Gaps = 7/413 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDV+SWN++IGG+     + EAL  F+EML S   P+  T  S++  CA LGA++   W+
Sbjct: 330 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWI 389

Query: 64  HNLIIEKKIELNFILSA---ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           H + I+K+++     S+   +LIDMY+KCG I+ A +VF+++    +S WNAMI G A+H
Sbjct: 390 H-VYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMH 448

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A  A  IF++M    + PD ITF+GLL+ACS  G+++ GR  F  M   Y I P+LEH
Sbjct: 449 GRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEH 508

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG M+DLLG +G  +EA  +I +M MEPD V+W +LL AC+    +ELGE    N+ ++ 
Sbjct: 509 YGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIE 568

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    RW+    +R ++  KG++K  G S +E+  V+H+F  GD+ H
Sbjct: 569 PENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFH 628

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + I  +L  +    +  GF+P T  VL ++ EE KEG L HHSEKLA+A+G++ T P
Sbjct: 629 PRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKP 688

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT++ I KNLR+C +CH   K+IS++ +R II RDR RFH F  G+CSC DYW
Sbjct: 689 GTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 135/290 (46%), Gaps = 43/290 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KDVVSWN+MI G+     + EAL  F+EM+ + + PD+ T  +V+  CA+ G++   
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELG 285

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ I +     N  +  +L+D+YSKCG+++ A  +F+ +   DV  WN +I G    
Sbjct: 286 RQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHM 345

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---KYFDHMRSRYSIQPQ 177
            L  +A  +F +M      P+ +T L +L AC+H G ++ GR    Y D      +    
Sbjct: 346 NLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASS 405

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMT-------------------------------- 205
           L    +++D+  + G IE A+ +  S+                                 
Sbjct: 406 LR--TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRK 463

Query: 206 --MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCY 253
             +EPD + +  LLSAC     L+LG     +I R M  DY +   +  Y
Sbjct: 464 IGIEPDDITFVGLLSACSRSGMLDLGR----HIFRTMTQDYKITPKLEHY 509



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 115/246 (46%), Gaps = 33/246 (13%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + +++ WN+M  G   ++    AL+ +  M+S  + P+ +TF  ++  CA+  A      
Sbjct: 96  EPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQ 155

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGK------------------------------- 91
           +H  +++   +L+  +  +LI +Y + G+                               
Sbjct: 156 IHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGY 215

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           I+ A+++FD +   DV  WNAMISG A  G   +A  +F +M   N+ PD  T + +++A
Sbjct: 216 IESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSA 275

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           C+  G +E GR+    +   +     L+   +++DL  + G +E A GL   + +  DV+
Sbjct: 276 CAQSGSIELGRQVHSWI-DDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGL-LYKDVI 333

Query: 212 VWRALL 217
            W  L+
Sbjct: 334 SWNTLI 339



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 84/206 (40%), Gaps = 35/206 (16%)

Query: 46  SVIYGCARLGALN--HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           S+++ C  L +L   HA  +   +      L+ +L   +I  +     +  A  VF+T+Q
Sbjct: 38  SLLHNCKTLQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFD--GLPYAISVFETIQ 95

Query: 104 RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
             ++ +WN M  G A+      A  ++  M    +LP+S TF  LL +C+     +EG++
Sbjct: 96  EPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQ 155

Query: 164 YFDHM----------------------------RSRYSIQPQLE--HYGAMVDLLGRAGH 193
              H+                            R  +   P  +   Y A++      G+
Sbjct: 156 IHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGY 215

Query: 194 IEEAYGLITSMTMEPDVVVWRALLSA 219
           IE A  L   + ++ DVV W A++S 
Sbjct: 216 IESAQKLFDEIPVK-DVVSWNAMISG 240


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/417 (46%), Positives = 265/417 (63%), Gaps = 7/417 (1%)

Query: 1   MPD----KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA 56
           MP+    KD V W +MI GFVRN   + AL  FR M    V P++FT   V+  C++LGA
Sbjct: 198 MPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGA 257

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
           L    WVH+ + + +IELN  +  ALI+MYS+CG I  A+ VFD ++  DV  +N MISG
Sbjct: 258 LEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISG 317

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
           ++++G +  A  +F  M    + P ++TF+G+L ACSH GLV+ G + F  M   Y ++P
Sbjct: 318 LSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEP 377

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNI 236
           Q+EHYG MVDLLGR G +EEAY LI +M M PD ++   LLSAC+  K LELGE     +
Sbjct: 378 QIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKEL 437

Query: 237 S---RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
               +   G YVLLS++Y    +W  A  VR  MK+ G++K  G S +E+   IH+F  G
Sbjct: 438 EDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLG 497

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           D  HP+ + I + L  L +  + EG+ P  E+VL D+ + EKE  L  HSE+LA+ YG++
Sbjct: 498 DLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLI 557

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T P T IR+ KNLR+C+DCHS IK+I+++ RR I+VRDR RFH FE G CSCGDYW
Sbjct: 558 STEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 614



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 112/221 (50%), Gaps = 6/221 (2%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + +V  + ++I GFV +  + EA++ +  ML   + PD +  AS++  C    AL     
Sbjct: 99  NPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGRE 158

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN----DVSVWNAMISGVA 118
           VH+  ++     N ++   ++++Y KCG++  A+ VF+ +  +    D   W AMI G  
Sbjct: 159 VHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFV 218

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            +     A   F  M+  NV P+  T + +L+ACS  G +E GR    +MR ++ I+  L
Sbjct: 219 RNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMR-KFEIELNL 277

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               A++++  R G I+EA  +   M  + DV+ +  ++S 
Sbjct: 278 FVGNALINMYSRCGSIDEAQTVFDEMK-DRDVITYNTMISG 317



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 6/167 (3%)

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
           +N    +H  +I      +  +   L+   SKC  I  A  +F      +V ++ A+I G
Sbjct: 52  INQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDG 111

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQ 175
               G   +A  ++++M   ++LPD+     +L AC     + EGR+   H R+ +    
Sbjct: 112 FVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREV--HSRALKLGFS 169

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSM---TMEPDVVVWRALLSA 219
                   +++L G+ G + +A  +   M    +  D V W A++  
Sbjct: 170 SNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDG 216


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/412 (43%), Positives = 270/412 (65%), Gaps = 3/412 (0%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P+   VSWN++I G+V+    ++AL  F++ML  +V+  + T++SV+  CA + AL    
Sbjct: 409 PNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGS 468

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H+L ++   + N ++  ALIDMY+KCG I+ A+ VFD ++ +D   WNAMISG ++HG
Sbjct: 469 QIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHG 528

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
           L  +A   F  M      PD +TF+G+L+ACS+ GL++ G+ YF  M   Y I+P  EHY
Sbjct: 529 LYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHY 588

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
             MV LLGR+GH+++A  L+  +  EP V+VWRALLSAC     +ELG ++   +  +  
Sbjct: 589 TCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEP 648

Query: 242 GD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
            D   +VLLSN+Y   +RW    ++R  MK+KG+RK  G SW+E  G +H F  GD SHP
Sbjct: 649 EDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHP 708

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           + + I+ +L  L  + ++EG++P    VL+DV + +KE  L+ HSE+LALAYG+++T   
Sbjct: 709 DTKLINGMLEWLNMKARNEGYVPDFSSVLLDVEDVDKEQRLWVHSERLALAYGLIRTPSI 768

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + +RI KNLRIC DCH+ IK+IS++++R II+RD  RFH F  G+CSCGDYW
Sbjct: 769 SPLRIIKNLRICADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 118/221 (53%), Gaps = 6/221 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP  DV+ W+ MI  + ++ + +EA+  F  M    V P++FT AS++  CA L  L   
Sbjct: 307 MPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLG 366

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF-DTVQRNDVSVWNAMISGVAI 119
             +H  +++  +++N  +S AL+DMY+KCG+++ + ++F ++    DVS WN +I G   
Sbjct: 367 NQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVS-WNTVIVGYVQ 425

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            G    A  +F  M    V    +T+  +L AC+    +E G +   H  S  +I  +  
Sbjct: 426 AGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQI--HSLSVKTIYDKNT 483

Query: 180 HYG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             G A++D+  + G+I++A  L+  M  E D V W A++S 
Sbjct: 484 VVGNALIDMYAKCGNIKDAR-LVFDMLREHDQVSWNAMISG 523



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 1/207 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD+VSW  M+  +V N  F+E+L+ F  M     +P+ FTFASV+  C  L   N    V
Sbjct: 209 KDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAV 268

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H    +        +   LID+Y K G +  A +VF+ + ++DV  W+ MI+  A    +
Sbjct: 269 HGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQS 328

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F +M    VLP+  T   LL AC+    ++ G +   H+  +  +   +    A
Sbjct: 329 EEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHV-VKVGLDMNVFVSNA 387

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDV 210
           ++D+  + G +E +  L +      DV
Sbjct: 388 LMDMYAKCGRMENSLQLFSESPNCTDV 414



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 120/251 (47%), Gaps = 7/251 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPD++ VS+ ++I G+ +  RF EA+  F  +     E + F F++V+            
Sbjct: 105 MPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLG 164

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           + VH  + +   + +  +  ALID YS CG  + A++VFD ++  D+  W  M++    +
Sbjct: 165 FSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVEN 224

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               ++  +F++M +    P++ TF  +L AC    +   G K       + S   +L  
Sbjct: 225 ECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVG-KAVHGCAFKTSYLEELFV 283

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
              ++DL  ++G +++A  +   M  + DV+ W  +++    + + E  E AI    R+ 
Sbjct: 284 GVELIDLYIKSGDVDDALQVFEEMPKD-DVIPWSFMIA---RYAQSEQSEEAIEMFCRMR 339

Query: 241 GGDYVLLSNMY 251
            G  ++L N +
Sbjct: 340 RG--LVLPNQF 348


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/407 (46%), Positives = 262/407 (64%), Gaps = 4/407 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVVSWNSM+  + +  + +EAL  F +M +  V+P + T  S++  CA LGAL+  
Sbjct: 154 MPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKG 213

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I + +IE+N I+  AL+DMY+KCGKI +A +VF+ ++  DV  WN +I+G+AIH
Sbjct: 214 LHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIH 273

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M+  +V P+ ITF+ +L+ACSH G+V+EG+K  D M S Y I+P++EH
Sbjct: 274 GHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEH 333

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  ++DLL RAG +EEA  LI +M MEP+     ALL  CR     ELGE+    ++N+ 
Sbjct: 334 YDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQ 393

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y+LLSN+Y   K+WD A  VR +MK  G+ K  G S +EL G++H+F AGD SH
Sbjct: 394 PCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSH 453

Query: 298 PEAQAIDKILGSLIQRTKSE-GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           PE+  I   L  +  R KS  G+   T  VL+D+ EE+KE  L  HSEKLA+AYG+L   
Sbjct: 454 PESNKIYDKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLD 513

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGL 403
               IRI KNLR+C DCH   K+IS++  R IIVRDR RFH FE G 
Sbjct: 514 SKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDGF 560



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 107/217 (49%), Gaps = 10/217 (4%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+DVVSWN+MI G+V+          F  M+      D  ++ ++I G A +G ++ A  
Sbjct: 63  DRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCR----DVISWNTIINGYAIVGKIDEA-- 116

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
               + ++  E N +   +++  + KCG ++ A  +F  +   DV  WN+M++  A  G 
Sbjct: 117 --KRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGK 174

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A A+F +M    V P   T + LL+AC+H G +++G     ++     I+       
Sbjct: 175 PNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDN-RIEVNSIVGT 233

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A+VD+  + G I  A  +  +M  + DV+ W  +++ 
Sbjct: 234 ALVDMYAKCGKISLATQVFNAMESK-DVLAWNTIIAG 269



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 11/179 (6%)

Query: 42  FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT 101
            T+  VI  C           VH  +++   E +  +  +LI +Y+    +  AK++F  
Sbjct: 1   MTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSL 60

Query: 102 VQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG 161
               DV  WNAMI G    G       +F +M    V  D I++  ++   +  G ++E 
Sbjct: 61  CSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRM----VCRDVISWNTIINGYAIVGKIDEA 116

Query: 162 RKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
           ++ FD M  R      L  + +M+    + G++EEA+GL + M    DVV W ++L AC
Sbjct: 117 KRLFDEMPER-----NLVSWNSMLSGFVKCGNVEEAFGLFSEMPCR-DVVSWNSML-AC 168


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/413 (44%), Positives = 260/413 (62%), Gaps = 5/413 (1%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P+K + SWN+MI G+ +N   D A+  F+EM+  ++ P+  T  S++  CA+LGAL+   
Sbjct: 377 PEKSLASWNAMISGYTQNGLTDRAISLFQEMMP-QLSPNPVTVTSILSACAQLGALSIGK 435

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           WVH LI  +++E N  +S AL+DMY+KCG I  A+++FD +   +V  WNAMI+G  +HG
Sbjct: 436 WVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHG 495

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              +A  +F +M    + P  +TFL +L ACSH GLV EG + F  M + Y  QP  EHY
Sbjct: 496 HGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHY 555

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
             MVD+LGRAG +  A   I  M +EP   VW ALL AC   K  E+  VA   + +L  
Sbjct: 556 ACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDP 615

Query: 242 ---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
              G YVLLSN+Y   + +  A +VR+++KK+ + K+ G + +E+    + F +GDRSHP
Sbjct: 616 ENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHP 675

Query: 299 EAQAIDKILGSLIQRTKSEGFLPAT-ELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           +A AI ++L  L  + +  G+   T    L DV +EEKE  +  HSEKLA+A+G++ T P
Sbjct: 676 QATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKP 735

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GTEIRI KNLR+C DCH+  K IS++  RVI+VRD  RFH F+ G+CSCGDYW
Sbjct: 736 GTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 113/215 (52%), Gaps = 3/215 (1%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D++S+N+MI G+  N   + A+  FRE+L+S    +  T   +I        L  +  + 
Sbjct: 279 DLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQ 338

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
           NL ++  I L   +S AL  +Y +  ++Q A+++FD      ++ WNAMISG   +GL  
Sbjct: 339 NLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTD 398

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
            A ++F +M M  + P+ +T   +L+AC+  G +  G+     ++S   ++  +    A+
Sbjct: 399 RAISLFQEM-MPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSE-RLESNVYVSTAL 456

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           VD+  + G I EA  L   M ++ +VV W A+++ 
Sbjct: 457 VDMYAKCGSIVEARQLFDLM-VDKNVVTWNAMITG 490



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 135/313 (43%), Gaps = 46/313 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D V WN+MI GF RN+ F++++R F +ML   +  D  T A+V+   A L      
Sbjct: 174 MPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLG 233

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +  L  +K +  +  +   LI +YSKCGK    + +FD + + D+  +NAMISG   +
Sbjct: 234 MGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFN 293

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLL------------------------------- 149
                A  +F ++       +S T +GL+                               
Sbjct: 294 HETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVS 353

Query: 150 TACS--HCGL--VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM- 204
           TA +  +C L  V+  R+ FD      S +  L  + AM+    + G  + A  L   M 
Sbjct: 354 TALTTVYCRLNEVQFARQLFDE-----SPEKSLASWNAMISGYTQNGLTDRAISLFQEMM 408

Query: 205 -TMEPDVVVWRALLSACRTFKRLELGE--VAIVNISRLMGGDYV--LLSNMYCYLKRWDT 259
             + P+ V   ++LSAC     L +G+    ++   RL    YV   L +MY        
Sbjct: 409 PQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVE 468

Query: 260 AENVREIMKKKGV 272
           A  + ++M  K V
Sbjct: 469 ARQLFDLMVDKNV 481



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 88/217 (40%), Gaps = 41/217 (18%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYWV 63
           D+  +N +I GF  N     ++  +  +   + + PD FT+A  I   +RL        +
Sbjct: 76  DLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLL 135

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   I   +  N  + +A++D+Y K  + ++A++VFD +   D  +WN MISG + +   
Sbjct: 136 HAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYF 195

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTAC------------------------------- 152
            D+  +F  M    +  DS T   +LTA                                
Sbjct: 196 EDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGL 255

Query: 153 ----SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
               S CG   +GR  FD +      QP L  Y AM+
Sbjct: 256 ISLYSKCGKSCKGRILFDQID-----QPDLISYNAMI 287



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 4/152 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M DK+VV+WN+MI G+  +    EAL+ F EML S + P   TF S++Y C+  G ++  
Sbjct: 476 MVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEG 535

Query: 61  YWV-HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             + H++      +      A ++D+  + G++  A E  + +      +VW A++    
Sbjct: 536 NEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACM 595

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150
           IH     A+       +F + P+++ +  LL+
Sbjct: 596 IHKNTEMANV--ASKRLFQLDPENVGYYVLLS 625


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/428 (44%), Positives = 273/428 (63%), Gaps = 19/428 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++ +VSWNSMI   VR   +D AL+ FREM  S  EPD +T  SV+  CA LG+L+  
Sbjct: 212 MPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLG 270

Query: 61  YWVHNLIIEK---KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
            W H  ++ K    + ++ ++  +LI+MY KCG ++MA++VF  +Q+ D++ WNAMI G 
Sbjct: 271 TWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGF 330

Query: 118 AIHGLAADASAIFTKM--EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           A HG A +A   F +M  +  NV P+S+TF+GLL AC+H G V +GR+YFD M   Y I+
Sbjct: 331 ATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIE 390

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA-CRTFKRLELGEVAIV 234
           P LEHYG +VDL+ RAG+I EA  ++ SM M+PD V+WR+LL A C+    +EL E    
Sbjct: 391 PALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIAR 450

Query: 235 NI----------SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELA 284
           NI          +    G YVLLS +Y    RW+    VR++M + G+RK  G S +E+ 
Sbjct: 451 NIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEIN 510

Query: 285 GVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPA-TELVLMDVSEE-EKEGNLYHH 342
           G+ H+F AGD SHP+ + I + L  +  R +S G+LP  ++  L+D + +  KE +L  H
Sbjct: 511 GISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLH 570

Query: 343 SEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGG 402
           SE+LA+A+G++   P T IRI KNLR+C+DCH   K+IS++    IIVRDR+RFH F+ G
Sbjct: 571 SERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDG 630

Query: 403 LCSCGDYW 410
            CSC DYW
Sbjct: 631 SCSCLDYW 638



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 103/223 (46%), Gaps = 6/223 (2%)

Query: 9   WNSMIGGFVRN-ARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           WN++I     + +R +EA   +R+ML   +  PDK TF  V+  CA +   +    VH  
Sbjct: 117 WNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQ 176

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           I++     +  ++  LI +Y  CG + +A++VFD +    +  WN+MI  +   G    A
Sbjct: 177 IVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSA 236

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY--GAM 184
             +F +M+  +  PD  T   +L+AC+  G +  G      +  +  +   ++     ++
Sbjct: 237 LQLFREMQR-SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSL 295

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
           +++  + G +  A  +   M    D+  W A++    T  R E
Sbjct: 296 IEMYCKCGSLRMAEQVFQGMQKR-DLASWNAMILGFATHGRAE 337



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 111/276 (40%), Gaps = 56/276 (20%)

Query: 42  FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT 101
           F+ A      ++L  L HA+ +     E+   L   L   ++ + S    +  A  VFD+
Sbjct: 52  FSLAETCSDMSQLKQL-HAFTLRTTYPEEPATL--FLYGKILQLSSSFSDVNYAFRVFDS 108

Query: 102 VQRNDVSVWNAMISGVAIHGLA--ADASAIFTKM-EMFNVLPDSITFLGLLTACS----- 153
           ++ +   +WN +I   A H ++   +A  ++ KM E     PD  TF  +L AC+     
Sbjct: 109 IENHSSFMWNTLIRACA-HDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGF 167

Query: 154 ------HCGLVEEG------------------------RKYFDHMRSRYSIQPQLEHYGA 183
                 HC +V+ G                        RK FD M  R      L  + +
Sbjct: 168 SEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPER-----SLVSWNS 222

Query: 184 MVDLLGRAGHIEEAYGLITSM--TMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
           M+D L R G  + A  L   M  + EPD    +++LSAC     L LG  A   + R   
Sbjct: 223 MIDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCD 282

Query: 242 GDY---VLLSN----MYCYLKRWDTAENVREIMKKK 270
            D    VL+ N    MYC       AE V + M+K+
Sbjct: 283 VDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKR 318


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/414 (44%), Positives = 270/414 (65%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           + DKDV +W+++I G+V+N R  EAL+ FRE+   S + P++ T  +VI  CA+LG L  
Sbjct: 241 LSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLET 300

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             WVH+ I   +   +  L+ +LIDM+SKCG I  AK +FD++   D+  WN+M++G A+
Sbjct: 301 GRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFAL 360

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HGL  +A A F  M+  ++ PD ITF+G+LTACSH GLV+EG+K F  + + Y ++ + E
Sbjct: 361 HGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSE 420

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HYG MVDLL RAG + EA   I  M ++PD  +W ++L ACR +  LELGE A   ++ +
Sbjct: 421 HYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKL 480

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G Y+LLSN+Y   K W+  + VRE+M +KG++K+ G S + +  + H F AGD S
Sbjct: 481 EPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCS 540

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HPE   I  +L  + ++ K  G++  T  VL+++ + +KE ++  HSEKLAL YG+LK+ 
Sbjct: 541 HPEIAEISIMLRQVREKLKLAGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSE 600

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  I I KNLR+C DCH+ IK++S++ +R I +RDR RFH F+ G CSC DYW
Sbjct: 601 IGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 126/220 (57%), Gaps = 3/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  ++ V W SMI G+++N   +EAL  +++M      PD+ T A+++  CA L  L   
Sbjct: 140 MGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVG 199

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ I E  +++  +L +AL++MY+KCG ++ A++VFD +   DV  W+A+I G   +
Sbjct: 200 MKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKN 259

Query: 121 GLAADASAIFTKME-MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
             + +A  +F ++    N+ P+ +T L +++AC+  G +E GR   D++ +R      + 
Sbjct: 260 NRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYI-TRTQKGHSVS 318

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              +++D+  + G I+ A  +  SM+ + D++ W ++++ 
Sbjct: 319 LNNSLIDMFSKCGDIDAAKRIFDSMSYK-DLISWNSMVNG 357



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 112/214 (52%), Gaps = 3/214 (1%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYWV 63
           DV++WNSM+  FV +     AL+ + EML  S+  PD+FTF S++ GCA L        +
Sbjct: 42  DVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVL 101

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +++  +  +  +   L++MY+ CG ++ A+ +F+ +   +  VW +MISG   +   
Sbjct: 102 HGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCP 161

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  ++ KME     PD +T   L++AC+    +  G K   H+R    ++       A
Sbjct: 162 NEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIR-EMDMKICAVLGSA 220

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           +V++  + G ++ A  +   ++ + DV  W AL+
Sbjct: 221 LVNMYAKCGDLKTARQVFDKLS-DKDVYAWSALI 253


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/428 (44%), Positives = 273/428 (63%), Gaps = 19/428 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++ +VSWNSMI   VR   +D AL+ FREM  S  EPD +T  SV+  CA LG+L+  
Sbjct: 269 MPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLG 327

Query: 61  YWVHNLIIEK---KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
            W H  ++ K    + ++ ++  +LI+MY KCG ++MA++VF  +Q+ D++ WNAMI G 
Sbjct: 328 TWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGF 387

Query: 118 AIHGLAADASAIFTKM--EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           A HG A +A   F +M  +  NV P+S+TF+GLL AC+H G V +GR+YFD M   Y I+
Sbjct: 388 ATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIE 447

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA-CRTFKRLELGEVAIV 234
           P LEHYG +VDL+ RAG+I EA  ++ SM M+PD V+WR+LL A C+    +EL E    
Sbjct: 448 PALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIAR 507

Query: 235 NI----------SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELA 284
           NI          +    G YVLLS +Y    RW+    VR++M + G+RK  G S +E+ 
Sbjct: 508 NIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEIN 567

Query: 285 GVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPA-TELVLMDVSEE-EKEGNLYHH 342
           G+ H+F AGD SHP+ + I + L  +  R +S G+LP  ++  L+D + +  KE +L  H
Sbjct: 568 GISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLH 627

Query: 343 SEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGG 402
           SE+LA+A+G++   P T IRI KNLR+C+DCH   K+IS++    IIVRDR+RFH F+ G
Sbjct: 628 SERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDG 687

Query: 403 LCSCGDYW 410
            CSC DYW
Sbjct: 688 SCSCLDYW 695



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 104/223 (46%), Gaps = 6/223 (2%)

Query: 9   WNSMIGGFVRN-ARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           WN++I     + +R +EA   +R+ML   +  PDK TF  V+  CA +   +    VH  
Sbjct: 174 WNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQ 233

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           I++     +  ++  LI +Y  CG + +A++VFD +    +  WN+MI  +   G    A
Sbjct: 234 IVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSA 293

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY--GAM 184
             +F +M+  +  PD  T   +L+AC+  G +  G      +  +  +   ++     ++
Sbjct: 294 LQLFREMQR-SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSL 352

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
           +++  + G +  A  +   M  + D+  W A++    T  R E
Sbjct: 353 IEMYCKCGSLRMAEQVFQGM-QKRDLASWNAMILGFATHGRAE 394



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 111/276 (40%), Gaps = 56/276 (20%)

Query: 42  FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT 101
           F+ A      ++L  L HA+ +     E+   L   L   ++ + S    +  A  VFD+
Sbjct: 109 FSLAETCSDMSQLKQL-HAFTLRTTYPEEPATL--FLYGKILQLSSSFSDVNYAFRVFDS 165

Query: 102 VQRNDVSVWNAMISGVAIHGLA--ADASAIFTKM-EMFNVLPDSITFLGLLTACS----- 153
           ++ +   +WN +I   A H ++   +A  ++ KM E     PD  TF  +L AC+     
Sbjct: 166 IENHSSFMWNTLIRACA-HDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGF 224

Query: 154 ------HCGLVEEG------------------------RKYFDHMRSRYSIQPQLEHYGA 183
                 HC +V+ G                        RK FD M  R      L  + +
Sbjct: 225 SEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPER-----SLVSWNS 279

Query: 184 MVDLLGRAGHIEEAYGLITSM--TMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
           M+D L R G  + A  L   M  + EPD    +++LSAC     L LG  A   + R   
Sbjct: 280 MIDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCD 339

Query: 242 GDY---VLLSN----MYCYLKRWDTAENVREIMKKK 270
            D    VL+ N    MYC       AE V + M+K+
Sbjct: 340 VDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKR 375


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/413 (44%), Positives = 260/413 (62%), Gaps = 5/413 (1%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P+K + SWN+MI G+ +N   D A+  F+EM+  ++ P+  T  S++  CA+LGAL+   
Sbjct: 377 PEKSLASWNAMISGYTQNGLTDRAISLFQEMMP-QLSPNPVTVTSILSACAQLGALSIGK 435

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           WVH LI  +++E N  +S AL+DMY+KCG I  A+++FD +   +V  WNAMI+G  +HG
Sbjct: 436 WVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHG 495

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              +A  +F +M    + P  +TFL +L ACSH GLV EG + F  M + Y  QP  EHY
Sbjct: 496 HGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHY 555

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
             MVD+LGRAG +  A   I  M +EP   VW ALL AC   K  E+  VA   + +L  
Sbjct: 556 ACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDP 615

Query: 242 ---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
              G YVLLSN+Y   + +  A +VR+++KK+ + K+ G + +E+    + F +GDRSHP
Sbjct: 616 ENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHP 675

Query: 299 EAQAIDKILGSLIQRTKSEGFLPAT-ELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           +A AI ++L  L  + +  G+   T    L DV +EEKE  +  HSEKLA+A+G++ T P
Sbjct: 676 QATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKP 735

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GTEIRI KNLR+C DCH+  K IS++  RVI+VRD  RFH F+ G+CSCGDYW
Sbjct: 736 GTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 113/215 (52%), Gaps = 3/215 (1%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D++S+N+MI G+  N   + A+  FRE+L+S    +  T   +I        L  +  + 
Sbjct: 279 DLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQ 338

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
           NL ++  I L   +S AL  +Y +  ++Q A+++FD      ++ WNAMISG   +GL  
Sbjct: 339 NLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTD 398

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
            A ++F +M M  + P+ +T   +L+AC+  G +  G+     ++S   ++  +    A+
Sbjct: 399 RAISLFQEM-MPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSE-RLESNVYVSTAL 456

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           VD+  + G I EA  L   M ++ +VV W A+++ 
Sbjct: 457 VDMYAKCGSIVEARQLFDLM-VDKNVVTWNAMITG 490



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 135/313 (43%), Gaps = 46/313 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D V WN+MI GF RN+ F++++R F +ML   +  D  T A+V+   A L      
Sbjct: 174 MPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLG 233

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +  L  +K +  +  +   LI +YSKCGK    + +FD + + D+  +NAMISG   +
Sbjct: 234 MGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFN 293

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLL------------------------------- 149
                A  +F ++       +S T +GL+                               
Sbjct: 294 HETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVS 353

Query: 150 TACS--HCGL--VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM- 204
           TA +  +C L  V+  R+ FD      S +  L  + AM+    + G  + A  L   M 
Sbjct: 354 TALTTVYCRLNEVQFARQLFDE-----SPEKSLASWNAMISGYTQNGLTDRAISLFQEMM 408

Query: 205 -TMEPDVVVWRALLSACRTFKRLELGE--VAIVNISRLMGGDYV--LLSNMYCYLKRWDT 259
             + P+ V   ++LSAC     L +G+    ++   RL    YV   L +MY        
Sbjct: 409 PQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVE 468

Query: 260 AENVREIMKKKGV 272
           A  + ++M  K V
Sbjct: 469 ARQLFDLMVDKNV 481



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 88/217 (40%), Gaps = 41/217 (18%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYWV 63
           D+  +N +I GF  N     ++  +  +   + + PD FT+A  I   +RL        +
Sbjct: 76  DLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLL 135

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   I   +  N  + +A++D+Y K  + ++A++VFD +   D  +WN MISG + +   
Sbjct: 136 HAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYF 195

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTAC------------------------------- 152
            D+  +F  M    +  DS T   +LTA                                
Sbjct: 196 EDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGL 255

Query: 153 ----SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
               S CG   +GR  FD +      QP L  Y AM+
Sbjct: 256 ISLYSKCGKSCKGRILFDQID-----QPDLISYNAMI 287



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 4/152 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M DK+VV+WN+MI G+  +    EAL+ F EML S + P   TF S++Y C+  G ++  
Sbjct: 476 MVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEG 535

Query: 61  YWV-HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             + H++      +      A ++D+  + G++  A E  + +      +VW A++    
Sbjct: 536 NEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACM 595

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150
           IH     A+       +F + P+++ +  LL+
Sbjct: 596 IHKNTEMANV--ASKRLFQLDPENVGYYVLLS 625


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/414 (44%), Positives = 271/414 (65%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           + DKDV +W+++I G+V+N R  EAL+ FRE+   S + P++ T  +VI  CA+LG L  
Sbjct: 241 LSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLET 300

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             WVH+ I   +   +  L+ +LIDM+SKCG I  AK +FD++   D+  WN+M++G+A+
Sbjct: 301 GRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLAL 360

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HGL  +A A F  M+  ++ PD ITF+G+LTACSH GLV+EG+K F  + + Y ++ + E
Sbjct: 361 HGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSE 420

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HYG MVDLL RAG + EA   I  M ++PD  +W ++L ACR +  LELGE A   ++ +
Sbjct: 421 HYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLEL 480

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G Y+LLSN+Y   K W+  + VRE+M +KG++K+ G S + +  + H F AGD S
Sbjct: 481 EPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCS 540

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HPE   I  +L  + ++ K  G++  T  VL+++ + +KE ++  HSEKLAL YG+LK+ 
Sbjct: 541 HPEIAEISIMLRQVREKLKLVGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSE 600

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  I I KNLR+C DCH+ IK++S++ +R I +RDR RFH F+ G CSC DYW
Sbjct: 601 IGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 126/220 (57%), Gaps = 3/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  ++ V W SMI G+++N   +EAL  +++M      PD+ T A+++  CA L  L   
Sbjct: 140 MGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVG 199

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ I E  +++  +L +AL++MY+KCG ++ A++VFD +   DV  W+A+I G   +
Sbjct: 200 MKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKN 259

Query: 121 GLAADASAIFTKME-MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
             + +A  +F ++    N+ P+ +T L +++AC+  G +E GR   D++ +R      + 
Sbjct: 260 NRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYI-TRTQKGHSVS 318

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              +++D+  + G I+ A  +  SM+ + D++ W ++++ 
Sbjct: 319 LNNSLIDMFSKCGDIDAAKRIFDSMSYK-DLISWNSMVNG 357



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 112/214 (52%), Gaps = 3/214 (1%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYWV 63
           DV++WNSM+  FV +     AL+ + EML  S+  PD+FTF S++ GCA L        +
Sbjct: 42  DVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVL 101

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +++  +  +  +   L++MY+ CG ++ A+ +F+ +   +  VW +MISG   +   
Sbjct: 102 HGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCP 161

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  ++ KME     PD +T   L++AC+    +  G K   H+R    ++       A
Sbjct: 162 NEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIR-EMDMKICAVLGSA 220

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           +V++  + G ++ A  +   ++ + DV  W AL+
Sbjct: 221 LVNMYAKCGDLKTARQVFDQLS-DKDVYAWSALI 253


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/428 (44%), Positives = 273/428 (63%), Gaps = 19/428 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++ +VSWNSMI   VR   +D AL+ FREM  S  EPD +T  SV+  CA LG+L+  
Sbjct: 189 MPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLG 247

Query: 61  YWVHNLIIEK---KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
            W H  ++ K    + ++ ++  +LI+MY KCG ++MA++VF  +Q+ D++ WNAMI G 
Sbjct: 248 TWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGF 307

Query: 118 AIHGLAADASAIFTKM--EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           A HG A +A   F +M  +  NV P+S+TF+GLL AC+H G V +GR+YFD M   Y I+
Sbjct: 308 ATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIE 367

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA-CRTFKRLELGEVAIV 234
           P LEHYG +VDL+ RAG+I EA  ++ SM M+PD V+WR+LL A C+    +EL E    
Sbjct: 368 PALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIAR 427

Query: 235 NI----------SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELA 284
           NI          +    G YVLLS +Y    RW+    VR++M + G+RK  G S +E+ 
Sbjct: 428 NIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEIN 487

Query: 285 GVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPA-TELVLMDVSEE-EKEGNLYHH 342
           G+ H+F AGD SHP+ + I + L  +  R +S G+LP  ++  L+D + +  KE +L  H
Sbjct: 488 GISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLH 547

Query: 343 SEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGG 402
           SE+LA+A+G++   P T IRI KNLR+C+DCH   K+IS++    IIVRDR+RFH F+ G
Sbjct: 548 SERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDG 607

Query: 403 LCSCGDYW 410
            CSC DYW
Sbjct: 608 SCSCLDYW 615



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 104/223 (46%), Gaps = 6/223 (2%)

Query: 9   WNSMIGGFVRN-ARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           WN++I     + +R +EA   +R+ML   +  PDK TF  V+  CA +   +    VH  
Sbjct: 94  WNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQ 153

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           I++     +  ++  LI +Y  CG + +A++VFD +    +  WN+MI  +   G    A
Sbjct: 154 IVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSA 213

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY--GAM 184
             +F +M+  +  PD  T   +L+AC+  G +  G      +  +  +   ++     ++
Sbjct: 214 LQLFREMQR-SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSL 272

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
           +++  + G +  A  +   M  + D+  W A++    T  R E
Sbjct: 273 IEMYCKCGSLRMAEQVFQGM-QKRDLASWNAMILGFATHGRAE 314



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 112/275 (40%), Gaps = 57/275 (20%)

Query: 45  ASVIYGCARLGALN--HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV 102
           A+V+  C+ +  L   HA+ +     E+   L   L   ++ + S    +  A  VFD++
Sbjct: 29  ATVLQTCSDMSQLKQLHAFTLRTTYPEEPATL--FLYGKILQLSSSFSDVNYAFRVFDSI 86

Query: 103 QRNDVSVWNAMISGVAIHGLA--ADASAIFTKM-EMFNVLPDSITFLGLLTACS------ 153
           + +   +WN +I   A H ++   +A  ++ KM E     PD  TF  +L AC+      
Sbjct: 87  ENHSSFMWNTLIRACA-HDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFS 145

Query: 154 -----HCGLVEEG------------------------RKYFDHMRSRYSIQPQLEHYGAM 184
                HC +V+ G                        RK FD M  R      L  + +M
Sbjct: 146 EGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPER-----SLVSWNSM 200

Query: 185 VDLLGRAGHIEEAYGLITSM--TMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
           +D L R G  + A  L   M  + EPD    +++LSAC     L LG  A   + R    
Sbjct: 201 IDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDV 260

Query: 243 DY---VLLSN----MYCYLKRWDTAENVREIMKKK 270
           D    VL+ N    MYC       AE V + M+K+
Sbjct: 261 DVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKR 295


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/413 (45%), Positives = 252/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P +D + WNS++ G  +N   +EAL  FR ML + V P   TF+S+I  C  L +L   
Sbjct: 231 LPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFG 290

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +I    E N  +S++LIDMY KCG+I +A  +FD +   DV  W AMI G A+H
Sbjct: 291 KQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALH 350

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +A  +F +ME+ N  P+ ITFL +LTACSH GLV++G KYF  M + Y I P LEH
Sbjct: 351 GPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEH 410

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           + A+ D LGRAG ++EAY  I+ M ++P   VW  LL ACR  K   L E     I  L 
Sbjct: 411 FAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELE 470

Query: 241 G---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G +V+LSNMY    RW+ A ++RE M+KKG++K    SW+E+   +H F A DRSH
Sbjct: 471 PRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHDRSH 530

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    I   L +  ++   EG +P TE V  D+ EE K   L  HSEKLA+ +GI+ T  
Sbjct: 531 PWYDRIIDALNAFSEQMAREGHVPNTEDVFQDIEEEHKSYVLCGHSEKLAIVFGIISTPA 590

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT+IR+ KNLR+C DCH+  K IS+L  R I+VRD  RFH F+ G CSCGD+W
Sbjct: 591 GTKIRVMKNLRVCIDCHTVTKFISKLADREIVVRDANRFHHFKDGNCSCGDFW 643



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 120/249 (48%), Gaps = 12/249 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++DVVSWN+++ G     R  EAL F R+M      PD FT ++V+   A    +   
Sbjct: 130 MIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRG 189

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH        + +  + ++LIDMY+ C +   + +VFD +   D  +WN++++G A +
Sbjct: 190 LEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQN 249

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  IF +M    V P  +TF  L+  C +   +  G++   ++      +  +  
Sbjct: 250 GSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICG-GFEDNVFI 308

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL----------SACRTFKRLELGE 230
             +++D+  + G I  A+ +   M+  PDVV W A++           A   F+R+ELG 
Sbjct: 309 SSSLIDMYCKCGEISIAHCIFDKMS-SPDVVSWTAMIMGYALHGPAREALVLFERMELGN 367

Query: 231 VAIVNISRL 239
               +I+ L
Sbjct: 368 AKPNHITFL 376



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 117/324 (36%), Gaps = 62/324 (19%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKF--TFASVIYGCARLGALNHAYWVHNL 66
           W   I        F +A+  F  M +S         +  + +  CA LG       +H L
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75

Query: 67  IIEKKIELNFILSAALIDMYSK--CGKI-----------------QMAKEVFDTVQRNDV 107
            I      +   + AL+++Y K  C  +                 +  ++VFD +   DV
Sbjct: 76  AIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDV 135

Query: 108 SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG------ 161
             WN ++ G A  G   +A     KM      PDS T   +L   + C  V+ G      
Sbjct: 136 VSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGF 195

Query: 162 --RKYFDH---------------MRSRYSIQ-----PQLEH--YGAMVDLLGRAGHIEEA 197
             R  FD                 R+ YS++     P  +H  + +++    + G +EEA
Sbjct: 196 AFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEA 255

Query: 198 YGLITSMT---MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG--DYVLLS---- 248
            G+   M    + P  V + +L+  C     L  G+   ++   + GG  D V +S    
Sbjct: 256 LGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQ--LHAYVICGGFEDNVFISSSLI 313

Query: 249 NMYCYLKRWDTAENVREIMKKKGV 272
           +MYC       A  + + M    V
Sbjct: 314 DMYCKCGEISIAHCIFDKMSSPDV 337


>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/421 (44%), Positives = 262/421 (62%), Gaps = 15/421 (3%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARL-----GALNH 59
           ++  WN+MI G V N  FD+A+ F+  M S    P+ FTF  V+  CARL     G   H
Sbjct: 76  NIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIH 135

Query: 60  AY----WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
                 W+H  I+E  +  N  +  +L+DMY+KCG ++ A+ VFD +   D+  W AMI 
Sbjct: 136 TLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQ 195

Query: 116 GVAIHGLAADASAIFTKMEMFNVL---PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY 172
           G A++GL  +A  +F +M+  N L   PD  TF+GLL  C+H GLV+EGR+YF+ M   +
Sbjct: 196 GYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFF 255

Query: 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA 232
           S+ P +EHYG MVDLLGRAG ++EA+ LI +M ME + +VW ALL ACR  +  +L E+A
Sbjct: 256 SLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELA 315

Query: 233 IVNISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQ 289
           +  +  L     G+YVLLSN+Y    +WD A  VR  M +K ++K  G SW+E+ G++H+
Sbjct: 316 LKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHE 375

Query: 290 FKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALA 349
           F  GD+ HP ++ I   L  L ++ K  G++P T+ VL D+ EEEKE  L  HSEKLA+A
Sbjct: 376 FLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFLGCHSEKLAIA 435

Query: 350 YGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDY 409
           +G++  +P   IR+ KNLR+C DCH  IK+IS +  R I VRD  RFH F  G CSC DY
Sbjct: 436 FGLISATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDY 495

Query: 410 W 410
           W
Sbjct: 496 W 496



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 13/129 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK---VEPDKFTFASVIYGCARLGAL 57
           MP+KD+VSW +MI G+  N    EA+  F +M       ++PD  TF  ++ GC   G +
Sbjct: 182 MPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIGLLCGCTHAGLV 241

Query: 58  NHAYWVHNLI-----IEKKIELNFILSAALIDMYSKCGKIQMAKEVF-DTVQRNDVSVWN 111
           +      N +     +   IE        ++D+  + G +  A ++  +     +  VW 
Sbjct: 242 DEGRRYFNSMYRFFSLTPSIE----HYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWG 297

Query: 112 AMISGVAIH 120
           A++    IH
Sbjct: 298 ALLGACRIH 306



 Score = 45.1 bits (105), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 15/151 (9%)

Query: 82  LIDMYSKCG----KIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFN 137
           L++M  +C          + +F  +++ ++ +WN MI G+  +    DA   +  M    
Sbjct: 48  LLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEG 107

Query: 138 VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG---------AMVDLL 188
            LP++ TF  +L AC+    ++ G K    +   + I   +   G         ++VD+ 
Sbjct: 108 FLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKEW-IHKCIMEMGMVRNVFVGTSLVDMY 166

Query: 189 GRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            + G++E+A  +   M  E D+V W A++  
Sbjct: 167 AKCGNMEKARSVFDGMP-EKDIVSWGAMIQG 196


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/428 (44%), Positives = 273/428 (63%), Gaps = 19/428 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++ +VSWNSMI   VR   +D AL+ FREM  S  EPD +T  SV+  CA LG+L+  
Sbjct: 203 MPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLG 261

Query: 61  YWVHNLIIEK---KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
            W H  ++ K    + ++ ++  +LI+MY KCG ++MA++VF  +Q+ D++ WNAMI G 
Sbjct: 262 TWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGF 321

Query: 118 AIHGLAADASAIFTKM--EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           A HG A +A   F +M  +  NV P+S+TF+GLL AC+H G V +GR+YFD M   Y I+
Sbjct: 322 ATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIE 381

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA-CRTFKRLELGEVAIV 234
           P LEHYG +VDL+ RAG+I EA  ++ SM M+PD V+WR+LL A C+    +EL E    
Sbjct: 382 PALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIAR 441

Query: 235 NI----------SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELA 284
           NI          +    G YVLLS +Y    RW+    VR++M + G+RK  G S +E+ 
Sbjct: 442 NIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEIN 501

Query: 285 GVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPA-TELVLMDVSEE-EKEGNLYHH 342
           G+ H+F AGD SHP+ + I + L  +  R +S G+LP  ++  L+D + +  KE +L  H
Sbjct: 502 GISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLH 561

Query: 343 SEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGG 402
           SE+LA+A+G++   P T IRI KNLR+C+DCH   K+IS++    IIVRDR+RFH F+ G
Sbjct: 562 SERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDG 621

Query: 403 LCSCGDYW 410
            CSC DYW
Sbjct: 622 SCSCLDYW 629



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 103/223 (46%), Gaps = 6/223 (2%)

Query: 9   WNSMIGGFVRN-ARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           WN++I     + +R +EA   +R+ML   +  PDK TF  V+  CA +   +    VH  
Sbjct: 108 WNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQ 167

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           I++     +  ++  LI +Y  CG + +A++VFD +    +  WN+MI  +   G    A
Sbjct: 168 IVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSA 227

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY--GAM 184
             +F +M+  +  PD  T   +L+AC+  G +  G      +  +  +   ++     ++
Sbjct: 228 LQLFREMQR-SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSL 286

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
           +++  + G +  A  +   M    D+  W A++    T  R E
Sbjct: 287 IEMYCKCGSLRMAEQVFQGMQKR-DLASWNAMILGFATHGRAE 328



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 111/276 (40%), Gaps = 56/276 (20%)

Query: 42  FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT 101
           F+ A      ++L  L HA+ +     E+   L   L   ++ + S    +  A  VFD+
Sbjct: 43  FSLAETCSDMSQLKQL-HAFTLRTTYPEEPATL--FLYGKILQLSSSFSDVNYAFRVFDS 99

Query: 102 VQRNDVSVWNAMISGVAIHGLA--ADASAIFTKM-EMFNVLPDSITFLGLLTACS----- 153
           ++ +   +WN +I   A H ++   +A  ++ KM E     PD  TF  +L AC+     
Sbjct: 100 IENHSSFMWNTLIRACA-HDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGF 158

Query: 154 ------HCGLVEEG------------------------RKYFDHMRSRYSIQPQLEHYGA 183
                 HC +V+ G                        RK FD M  R      L  + +
Sbjct: 159 SEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPER-----SLVSWNS 213

Query: 184 MVDLLGRAGHIEEAYGLITSM--TMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
           M+D L R G  + A  L   M  + EPD    +++LSAC     L LG  A   + R   
Sbjct: 214 MIDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCD 273

Query: 242 GDY---VLLSN----MYCYLKRWDTAENVREIMKKK 270
            D    VL+ N    MYC       AE V + M+K+
Sbjct: 274 VDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKR 309


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/419 (46%), Positives = 271/419 (64%), Gaps = 14/419 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++DVVSW+++I G+V+   F EAL FF +ML S+V+P+++T  S +  C+ L AL+  
Sbjct: 370 MHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQG 429

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
            W+H  I    I++N  L A+LIDMY+KCG+I  A  VF   + +  V  WNAMI G A+
Sbjct: 430 KWIHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAM 489

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +A  +F KM++  V P+ +TF+ LL ACSH  +V+EG+ YF+ M S Y I P++E
Sbjct: 490 HGKPEEAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDYGINPEIE 549

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HYG MVDLL R+GH++++  +I SM M PDV +W ALL+ACR +K +E G      I R+
Sbjct: 550 HYGCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWGALLNACRIYKDMERG----YRIGRI 605

Query: 240 MG-------GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKS-QGKSWLELAGVIHQFK 291
           +        G  VLL N+Y    RW+ A  VRE  +    RK   G S +EL GV H+F 
Sbjct: 606 IKEIDPNHIGCNVLLGNIYSTSGRWNEARMVREKNEINSDRKKIPGFSSIELNGVFHEFL 665

Query: 292 AGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDV-SEEEKEGNLYHHSEKLALAY 350
            GDRSHP+++ I   L  +I + K  G++P    VL+D   EE+KE  L  HSEKLA+A+
Sbjct: 666 VGDRSHPQSREIYSFLDEMISKLKIAGYVPELGEVLLDFDDEEDKETALSVHSEKLAIAF 725

Query: 351 GILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDY 409
           G++ T+PGT IRI KNLR+C DCH   K IS++  RVIIVRDR+R+H F+ G+CSC DY
Sbjct: 726 GLMNTAPGTPIRIVKNLRVCGDCHQATKFISKVYDRVIIVRDRMRYHHFKDGICSCKDY 784



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 106/250 (42%), Gaps = 34/250 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNAR-FDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALN 58
           +P  D+  +N+MI     +   + +++  FR ++  S   P++++F      C     + 
Sbjct: 236 IPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGACGNGMCVR 295

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQ------------------------- 93
               V    ++  ++ N  +  ALI M+ K G+++                         
Sbjct: 296 EGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYV 355

Query: 94  ------MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLG 147
                 +AKE+FD +   DV  W+ +I+G    G   +A   F KM    V P+  T + 
Sbjct: 356 GSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVS 415

Query: 148 LLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME 207
            L ACS+   +++G+    ++R R +I+       +++D+  + G I+ A  +     ++
Sbjct: 416 ALAACSNLVALDQGKWIHVYIR-RDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVK 474

Query: 208 PDVVVWRALL 217
             V  W A++
Sbjct: 475 RKVWPWNAMI 484



 Score = 45.8 bits (107), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 80/181 (44%), Gaps = 14/181 (7%)

Query: 44  FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
            +S+I  C  +  +   +   NLI   +I L  I +  L ++      +  A ++FD + 
Sbjct: 182 LSSLIDLCKSINQIKQTH--ANLITTAQITLPVIANKFLKNV--ALASLTYAHKLFDQIP 237

Query: 104 RNDVSVWNAMISGVAIHGLAA----DASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLV 158
           + D+ ++N MI     H ++     D+ A+F  +       P+  +F+    AC +   V
Sbjct: 238 QPDLFIYNTMIKS---HSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGACGNGMCV 294

Query: 159 EEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
            EG + F H   +  +   +    A++ + G+ G +E+A  +  S  ++ D   W  ++ 
Sbjct: 295 REGEQVFTHA-VKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDS-AVDRDFYSWNTMIG 352

Query: 219 A 219
           A
Sbjct: 353 A 353


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/414 (43%), Positives = 264/414 (63%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           M ++DV+SWNS+I  + +N    E++  F  M+   ++  +  T ++V+  CA  G+   
Sbjct: 168 MAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRL 227

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H+ +I+  +E N  +  ++IDMY KCGK++MA++ FD ++  +V  W+AM++G  +
Sbjct: 228 GKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGM 287

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG A +A  +F +M M  V P+ ITF+ +L ACSH GL+EEG  +F  M   + ++P +E
Sbjct: 288 HGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVE 347

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HYG MVDLLGRAG+++EA+ LI  M + PD VVW ALL ACR  K ++LGE++   +  L
Sbjct: 348 HYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFEL 407

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVLLSN+Y    RW+  E +R +MK  G+ K  G S +++ G +H F  GDR 
Sbjct: 408 DPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDRE 467

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+ + I + L  L  + +  G++P    VL DV  EEKE  L  HSEKLA+A+GI+ T 
Sbjct: 468 HPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTV 527

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PGT I I KNLR+C DCH+ IK IS+++ R I+VRD  RFH F  GLCSCGDYW
Sbjct: 528 PGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 581



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 126/295 (42%), Gaps = 75/295 (25%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +V SWNS+I    R+    EALR F  M    ++P++ TF   I  C+ L  L+     H
Sbjct: 40  NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAH 99

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG-------- 116
              +    E +  +S+AL+DMYSKCG+++ A+ +FD +   ++  W +MI+G        
Sbjct: 100 QQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAH 159

Query: 117 -----------------------VAIHGLAADASAIFTKM-EMFNVLPDSITFLGLLTAC 152
                                   A +G++ ++  IF +M +   +  +++T   +L AC
Sbjct: 160 RALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLAC 219

Query: 153 SH-----------------------------------CGLVEEGRKYFDHMRSRYSIQPQ 177
           +H                                   CG VE  RK FD MR +      
Sbjct: 220 AHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREK-----N 274

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTM---EPDVVVWRALLSACRTFKRLELG 229
           ++ + AMV   G  GH +EA  +   M M   +P+ + + ++L+AC     LE G
Sbjct: 275 VKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEG 329



 Score = 45.4 bits (106), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 4/119 (3%)

Query: 102 VQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG 161
           V + +V  WN++I+ +A  G + +A   F+ M   ++ P+  TF   + +CS    +  G
Sbjct: 36  VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSG 95

Query: 162 RKYFDHMRSR-YSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           R+   H ++  +  +P L    A+VD+  + G + +A  L   ++   ++V W ++++ 
Sbjct: 96  RQ--AHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEIS-HRNIVSWTSMITG 151


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/416 (46%), Positives = 259/416 (62%), Gaps = 6/416 (1%)

Query: 1   MP-DKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALN 58
           MP  K+ VSWN+MI  FV+  RF EA   FR M +  K+E D+F  A+++  C  +GAL 
Sbjct: 192 MPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVGALE 251

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
              W+H  + +  I L+  L+  +IDMY KCG +  A  VF  ++   VS WN MI G A
Sbjct: 252 QGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFA 311

Query: 119 IHGLAADASAIFTKMEM-FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           +HG   DA  +F +ME    V PDSITF+ +LTAC+H GLVEEG  YF +M   + I P 
Sbjct: 312 MHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPT 371

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IV 234
            EHYG MVDLL RAG +EEA  +I  M M PD  V  ALL ACR    LELGE     ++
Sbjct: 372 KEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHGNLELGEEVGNRVI 431

Query: 235 NISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294
            +     G YV+L NMY    +W+    VR++M  +GV+K  G S +E+ GV+++F AG 
Sbjct: 432 ELDPENSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVKKEPGFSMIEMEGVVNEFVAGG 491

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
           R HP A+AI   +  +++  +  GF+P T+ VL D+ EEE+E  L++HSEKLA+AYG+LK
Sbjct: 492 RDHPLAEAIYAKIYEMLESIRVVGFVPDTDGVLHDLVEEERENPLFYHSEKLAIAYGLLK 551

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T  G  +R++KNLR+C DCH   KMIS++    II+RDR RFH F  G CSC DYW
Sbjct: 552 TKRGETLRVTKNLRVCKDCHQASKMISKVYDCDIIIRDRSRFHHFSNGECSCKDYW 607



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 108/285 (37%), Gaps = 59/285 (20%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDE-ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           +P+ D   +N++   F   ++    +L F+  ML   V P+ FTF S+I  C        
Sbjct: 62  LPNPDTFLYNTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACK---LEEE 118

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
           A  +H  +++     +      LI +Y   G +  A+ VF T+   +V  W +++SG + 
Sbjct: 119 AKQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQ 178

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            GL  +A  +F   E+     +S++                                   
Sbjct: 179 WGLVDEAFRVF---ELMPCKKNSVS----------------------------------- 200

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSM----TMEPDVVVWRALLSACRTFKRLELG------ 229
            + AM+    +     EA+ L   M     ME D  V   +LSAC     LE G      
Sbjct: 201 -WNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKY 259

Query: 230 --EVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGV 272
             +  IV  S+L       + +MYC     D A +V   +K K V
Sbjct: 260 VEKTGIVLDSKLA----TTIIDMYCKCGCLDKAFHVFCGLKVKRV 300


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/411 (45%), Positives = 263/411 (63%), Gaps = 4/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+++V+W++MI G+ R    +EAL  FR+M  + V PD+ T  SVI  CA  GAL+   W
Sbjct: 155 DRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKW 214

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  I ++ IE +  LS AL++MY+KCG I+ AKEVFD +   D   W++MI G+AI+GL
Sbjct: 215 VHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGL 274

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A DA   F +ME   V P+ +TF+G+L+AC+H GLV EGR+Y+  M   + I P +E YG
Sbjct: 275 AEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSML-EFGIVPSMELYG 333

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            MVDLL RA  +E+A  L+ +M + P+ V+WR LL  C+  K L+  EV    ++ +   
Sbjct: 334 CMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPH 393

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
              +Y+LLSN+Y  + +W+    VR+ MK  G++   G S +E+ G++H+F  GD SHPE
Sbjct: 394 NAENYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPE 453

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           A  + +IL  + +R  + G  P    VL +V +EEKE  L  HSE+LA+AYG+LKT    
Sbjct: 454 AMEVREILRDISKRVHAVGHQPGISDVLHNVVDEEKENALCEHSERLAIAYGLLKTKTPM 513

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI KNLR+C DCH   K+IS   RR IIVRDR+RFH+F  G CSC D+W
Sbjct: 514 AIRIVKNLRVCGDCHEVTKIISAEYRREIIVRDRVRFHKFVNGSCSCRDFW 564



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 115/215 (53%), Gaps = 4/215 (1%)

Query: 5   DVVSWNSMIGGFVRN-ARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++ SWNSMI G  ++     E +  FR+M+      P+ FT A V+  C+ + AL     
Sbjct: 54  NIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQ 113

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  +++     +  +  AL++ Y+KC  I +A +VFD +   ++  W+ MISG A  GL
Sbjct: 114 VHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGL 173

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F  M+   V+PD +T + +++AC+  G ++ G K+     ++  I+  LE   
Sbjct: 174 VNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTG-KWVHAYINKQLIETDLELST 232

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           A+V++  + G IE A  +  +M ++ D   W +++
Sbjct: 233 ALVNMYAKCGCIERAKEVFDAMPVK-DTKAWSSMI 266



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 7/120 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD  +W+SMI G   N   ++AL  F  M  +KV+P+  TF  V+  CA  G ++  
Sbjct: 254 MPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEG 313

Query: 61  --YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT--VQRNDVSVWNAMISG 116
             YW  + ++E  I  +  L   ++D+  +   ++ A  + +T  +  N V +W  ++ G
Sbjct: 314 RRYW--SSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPV-IWRTLLVG 370



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 93/226 (41%), Gaps = 39/226 (17%)

Query: 87  SKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAI-FTKMEMFNVL-PDSIT 144
           S  G I  A+++F  +QR ++  WN+MI G +     +    I F KM       P++ T
Sbjct: 35  SPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFT 94

Query: 145 FLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLEH----------------------- 180
              +L ACS    +EEG++ + + ++S +   P +E                        
Sbjct: 95  MAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEIT 154

Query: 181 ------YGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGEV 231
                 +  M+    R G + EA GL   M    + PD V   +++SAC     L+ G+ 
Sbjct: 155 DRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKW 214

Query: 232 AIVNISR-LMGGDYVL---LSNMYCYLKRWDTAENVREIMKKKGVR 273
               I++ L+  D  L   L NMY      + A+ V + M  K  +
Sbjct: 215 VHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTK 260


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/413 (45%), Positives = 257/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD VS+++++ G V+N     AL  FR M  S ++PD  T   V+  C+ L AL H 
Sbjct: 373 MNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG 432

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           +  H  +I +    + ++  ALIDMYSKCGKI  A+EVF+ + R+D+  WNAMI G  IH
Sbjct: 433 FCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIH 492

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  +F  +    + PD ITF+ LL++CSH GLV EGR +FD M   +SI P++EH
Sbjct: 493 GLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEH 552

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
              MVD+LGRAG I+EA+  I +M  EPDV +W ALLSACR  K +ELGE     I  L 
Sbjct: 553 CICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLG 612

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G++VLLSN+Y    RWD A ++R   K  G++K  G SW+E+ G++H F  GD+SH
Sbjct: 613 PESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSH 672

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            +   I++ L  L+   K  G+      V  DV EEEKE  L +HSEKLA+A+GIL    
Sbjct: 673 LQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKA 732

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  I ++KNLR+C DCH+ IK ++ + +R I VRD  RFH F+ G C+CGD+W
Sbjct: 733 GRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 113/218 (51%), Gaps = 3/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNH 59
           M  ++ VSW++MIGG+V +    EAL  F +M L   ++P   T  SV+  CA+L  L+ 
Sbjct: 271 MGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSR 330

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  II+    L+ +L   L+ MY+KCG I  A   FD +   D   ++A++SG   
Sbjct: 331 GRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQ 390

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G AA A +IF  M++  + PD  T LG+L ACSH   ++ G     ++  R      L 
Sbjct: 391 NGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLI 450

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              A++D+  + G I  A  +   M    D+V W A++
Sbjct: 451 -CNALIDMYSKCGKISFAREVFNRMDRH-DIVSWNAMI 486



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 123/288 (42%), Gaps = 44/288 (15%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+  V+ WN +I  +  N  FD A+  +  ML   V P+K+T+  V+  C+ L A+   
Sbjct: 69  IPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDG 128

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+      +E +  +  AL+D Y+KCG +  A+ +F ++   DV  WNAMI+G +++
Sbjct: 129 VEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLY 188

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTAC---------------------------- 152
           GL  DA  +  +M+   + P+S T +G+L                               
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVG 248

Query: 153 -------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM- 204
                  + C  +   RK FD M  R  +      + AM+     +  ++EA  L   M 
Sbjct: 249 TGLLDMYAKCQCLLYARKIFDVMGVRNEVS-----WSAMIGGYVASDCMKEALELFDQMI 303

Query: 205 ---TMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSN 249
               M+P  V   ++L AC     L  G      I +L     +LL N
Sbjct: 304 LKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGN 351



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 115/269 (42%), Gaps = 46/269 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVV+WN+MI G       D+A++   +M    + P+  T   V+       AL H 
Sbjct: 170 MSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHG 229

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
             +H   + +  +   ++   L+DMY+KC  +  A+++FD +  RN+VS W+AMI G   
Sbjct: 230 KALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVS-WSAMIGGYVA 288

Query: 120 HGLAADASAIFTKMEMFNVL-PDSITFLGLLTAC-------------------------- 152
                +A  +F +M + + + P  +T   +L AC                          
Sbjct: 289 SDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDIL 348

Query: 153 ---------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
                    + CG++++  ++FD M  + S+      + A+V    + G+   A  +   
Sbjct: 349 LGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVS-----FSAIVSGCVQNGNAAVALSIFRM 403

Query: 204 MTM---EPDVVVWRALLSACRTFKRLELG 229
           M +   +PD+     +L AC     L+ G
Sbjct: 404 MQLSGIDPDLTTMLGVLPACSHLAALQHG 432



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 86/183 (46%), Gaps = 2/183 (1%)

Query: 41  KFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD 100
           K  +  ++  C +  +L  A  +H   ++     +  +   L  +Y  C ++ +A+ +FD
Sbjct: 8   KNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFD 67

Query: 101 TVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE 160
            +    V +WN +I   A +G    A  ++  M    V P+  T+  +L ACS    +E+
Sbjct: 68  EIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIED 127

Query: 161 GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
           G +   H +  + ++  +    A+VD   + G + EA  L +SM+   DVV W A+++ C
Sbjct: 128 GVEIHSHAK-MFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR-DVVAWNAMIAGC 185

Query: 221 RTF 223
             +
Sbjct: 186 SLY 188


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/414 (43%), Positives = 264/414 (63%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           M ++DV+SWNS+I  + +N    E++  F  M+   ++  +  T ++V+  CA  G+   
Sbjct: 322 MAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRL 381

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H+ +I+  +E N  +  ++IDMY KCGK++MA++ FD ++  +V  W+AM++G  +
Sbjct: 382 GKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGM 441

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG A +A  +F +M M  V P+ ITF+ +L ACSH GL+EEG  +F  M   + ++P +E
Sbjct: 442 HGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVE 501

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HYG MVDLLGRAG+++EA+ LI  M + PD VVW ALL ACR  K ++LGE++   +  L
Sbjct: 502 HYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFEL 561

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVLLSN+Y    RW+  E +R +MK  G+ K  G S +++ G +H F  GDR 
Sbjct: 562 DPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDRE 621

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+ + I + L  L  + +  G++P    VL DV  EEKE  L  HSEKLA+A+GI+ T 
Sbjct: 622 HPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTV 681

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PGT I I KNLR+C DCH+ IK IS+++ R I+VRD  RFH F  GLCSCGDYW
Sbjct: 682 PGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 735



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 128/273 (46%), Gaps = 52/273 (19%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREML--------SSKVEPDKFTFASVIYGCARLG 55
           +++VSW SMI G+V+N     AL  F+E L          +V  D     SV+  C+R+ 
Sbjct: 216 RNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVS 275

Query: 56  ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
             +    VH  +I++  E +  +   L+D Y+KCG++ +++ VFD +   DV  WN++I+
Sbjct: 276 EKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIA 335

Query: 116 GVAIHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSH-------------------- 154
             A +G++ ++  IF +M +   +  +++T   +L AC+H                    
Sbjct: 336 VYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLE 395

Query: 155 ---------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199
                          CG VE  RK FD MR +      ++ + AMV   G  GH +EA  
Sbjct: 396 SNVFVGTSIIDMYCKCGKVEMARKAFDRMREK-----NVKSWSAMVAGYGMHGHAKEALE 450

Query: 200 LITSMTM---EPDVVVWRALLSACRTFKRLELG 229
           +   M M   +P+ + + ++L+AC     LE G
Sbjct: 451 VFYEMNMAGVKPNYITFVSVLAACSHAGLLEEG 483



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 134/327 (40%), Gaps = 61/327 (18%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +V SWNS+I    R+    EALR F  M    ++P++ TF   I  C+ L  L+     H
Sbjct: 116 NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAH 175

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
              +    E +  +S+AL+DMYSKCG+++ A+ +FD +   ++  W +MI+G   +  A 
Sbjct: 176 QQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAH 235

Query: 125 DASAIFTKMEM--------FNVLPDSITFLGLLTACSH---------------------- 154
            A  +F +  +          V  D I  + +L+ACS                       
Sbjct: 236 RALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGD 295

Query: 155 -------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
                        CG +   R+ FD M  R  I      + +++ +  + G   E+  + 
Sbjct: 296 LGVENTLMDAYAKCGELGVSRRVFDGMAERDVIS-----WNSIIAVYAQNGMSTESMEIF 350

Query: 202 TSMTMEPDV----VVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLS----NMYCY 253
             M  + ++    V   A+L AC       LG+     + ++     V +     +MYC 
Sbjct: 351 HRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCK 410

Query: 254 LKRWDTAENVREIMKKKGVRKSQGKSW 280
             + + A    + M++K V     KSW
Sbjct: 411 CGKVEMARKAFDRMREKNV-----KSW 432



 Score = 45.1 bits (105), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 4/119 (3%)

Query: 102 VQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG 161
           V + +V  WN++I+ +A  G + +A   F+ M   ++ P+  TF   + +CS    +  G
Sbjct: 112 VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSG 171

Query: 162 RKYFDHMRSR-YSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           R+   H ++  +  +P L    A+VD+  + G + +A  L   ++   ++V W ++++ 
Sbjct: 172 RQA--HQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHR-NIVSWTSMITG 227


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/413 (45%), Positives = 257/413 (62%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + +K ++SWN MI  +V NA  +EA+  + +M    VEPD  + +SV+  C  L A    
Sbjct: 266 LKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLG 325

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +  KK+  N +L  ALIDMY+KCG ++ A+ VFD +   DV  W +MIS   + 
Sbjct: 326 RRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMS 385

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA A+F KM      PD I F+ +L ACSH GLV+EGR  F+ M + Y I P +EH
Sbjct: 386 GQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNLM-AEYGITPGIEH 444

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  MVDLLGRAG I+EAY L   M MEP+  VW +LLSACR +  + +  +A  ++ +L 
Sbjct: 445 YNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLA 504

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    RW   E VR IM  KG++K  G S +E+   ++ F AGD+SH
Sbjct: 505 PEQSGYYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSH 564

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            +++ I K LG L+ R K  G++P T+  L DV EE+KE +L  HSEKLA+ + IL T P
Sbjct: 565 TQSKEIYKALGVLVGRMKELGYMPETDSALHDVEEEDKECHLAVHSEKLAIVFAILNTKP 624

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G+ IRI+KN+R+C DCH   K+IS++  R II+RD  RFH F  G+CSCGDYW
Sbjct: 625 GSTIRITKNIRVCGDCHVATKLISKIAEREIIIRDTHRFHHFRDGVCSCGDYW 677



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 109/232 (46%), Gaps = 10/232 (4%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           DK+VV +N MI  +V N  + +AL  F+ M +    PD +T+  V+  C+  G L     
Sbjct: 99  DKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQ 158

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  +++  +++N  +   L+ MY KC  +  A+ V D +   D+  WN+M++G A +G 
Sbjct: 159 IHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGR 218

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSH--CGLVEEGRKYFDHMRSRYSIQPQLEH 180
             DA  +  +ME   + PD+ T   LL A ++  C  V   +  F  ++ +      L  
Sbjct: 219 FNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEK-----SLIS 273

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELG 229
           +  M+ +        EA  L   M    +EPD V   ++L AC       LG
Sbjct: 274 WNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLG 325



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 2/154 (1%)

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
           ++I++ +  N  L   L+  Y+ CG+    + +FD +   +V  +N MI     +GL  D
Sbjct: 61  ILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQD 120

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           A  +F  M      PD+ T+  +L ACS  G +  G +    +  +  +   L     +V
Sbjct: 121 ALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAV-VKLGLDMNLYIGNGLV 179

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            + G+   ++ A  ++  M    D+V W ++++ 
Sbjct: 180 SMYGKCKWLDAARRVLDEMPGR-DMVSWNSMVAG 212


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/413 (45%), Positives = 257/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD VS+++++ G V+N     AL  FR M  S ++PD  T   V+  C+ L AL H 
Sbjct: 373 MNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG 432

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           +  H  +I +    + ++  ALIDMYSKCGKI  A+EVF+ + R+D+  WNAMI G  IH
Sbjct: 433 FCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIH 492

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  +F  +    + PD ITF+ LL++CSH GLV EGR +FD M   +SI P++EH
Sbjct: 493 GLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEH 552

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
              MVD+LGRAG I+EA+  I +M  EPDV +W ALLSACR  K +ELGE     I  L 
Sbjct: 553 CICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLG 612

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G++VLLSN+Y    RWD A ++R   K  G++K  G SW+E+ G++H F  GD+SH
Sbjct: 613 PESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSH 672

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            +   I++ L  L+   K  G+      V  DV EEEKE  L +HSEKLA+A+GIL    
Sbjct: 673 LQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKA 732

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  I ++KNLR+C DCH+ IK ++ + +R I VRD  RFH F+ G C+CGD+W
Sbjct: 733 GRPILVTKNLRVCGDCHAAIKFMTVITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 113/218 (51%), Gaps = 3/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNH 59
           M  ++ VSW++MIGG+V +    EAL  F +M L   ++P   T  SV+  CA+L  L+ 
Sbjct: 271 MGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSR 330

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  II+    L+ +L   L+ MY+KCG I  A   FD +   D   ++A++SG   
Sbjct: 331 GRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQ 390

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G AA A +IF  M++  + PD  T LG+L ACSH   ++ G     ++  R      L 
Sbjct: 391 NGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLI 450

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              A++D+  + G I  A  +   M    D+V W A++
Sbjct: 451 -CNALIDMYSKCGKISFAREVFNRMDRH-DIVSWNAMI 486



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 130/313 (41%), Gaps = 48/313 (15%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+  V+ WN +I  +  N  FD A+  +  ML   V P+K+T+  V+  C+ L A+   
Sbjct: 69  IPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDG 128

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+      +E +  +  AL+D Y+KCG +  A+ +F ++   DV  WNAMI+G +++
Sbjct: 129 VEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLY 188

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTAC---------------------------- 152
           GL  DA  +  +M+   + P+S T +G+L                               
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVG 248

Query: 153 -------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM- 204
                  + C  +   RK FD M  R  +      + AM+     +  ++EA  L   M 
Sbjct: 249 TGLLDMYAKCQCLLYARKIFDVMGVRNEVS-----WSAMIGGYVXSDCMKEALELFDQMI 303

Query: 205 ---TMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSN----MYCYLKRW 257
               M+P  V   ++L AC     L  G      I +L     +LL N    MY      
Sbjct: 304 LKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVI 363

Query: 258 DTAENVREIMKKK 270
           D A    + M  K
Sbjct: 364 DDAIRFFDXMNPK 376



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 115/269 (42%), Gaps = 46/269 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVV+WN+MI G       D+A++   +M    + P+  T   V+       AL H 
Sbjct: 170 MSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHG 229

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
             +H   + +  +   ++   L+DMY+KC  +  A+++FD +  RN+VS W+AMI G   
Sbjct: 230 KALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVS-WSAMIGGYVX 288

Query: 120 HGLAADASAIFTKMEMFNVL-PDSITFLGLLTAC-------------------------- 152
                +A  +F +M + + + P  +T   +L AC                          
Sbjct: 289 SDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDIL 348

Query: 153 ---------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
                    + CG++++  ++FD M  + S+      + A+V    + G+   A  +   
Sbjct: 349 LGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVS-----FSAIVSGCVQNGNAAVALSIFRM 403

Query: 204 MTM---EPDVVVWRALLSACRTFKRLELG 229
           M +   +PD+     +L AC     L+ G
Sbjct: 404 MQLSGIDPDLTTMLGVLPACSHLAALQHG 432



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 86/183 (46%), Gaps = 2/183 (1%)

Query: 41  KFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD 100
           K  +  ++  C +  +L  A  +H   ++     +  +   L  +Y  C ++ +A+ +FD
Sbjct: 8   KNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFD 67

Query: 101 TVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE 160
            +    V +WN +I   A +G    A  ++  M    V P+  T+  +L ACS    +E+
Sbjct: 68  EIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIED 127

Query: 161 GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
           G +   H +  + ++  +    A+VD   + G + EA  L +SM+   DVV W A+++ C
Sbjct: 128 GVEIHSHAK-MFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR-DVVAWNAMIAGC 185

Query: 221 RTF 223
             +
Sbjct: 186 SLY 188


>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
          Length = 602

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/413 (43%), Positives = 260/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +++VSWNSMI G+V+  RF +AL  F EM +  VE + F   S +  C   GAL   
Sbjct: 190 MPARNLVSWNSMISGYVKADRFLDALEVFDEMRALGVEGNGFVATSALVACTGAGALGRG 249

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             ++  + +  IE++  L+ A++DMY KCG +  A  VFD++    ++ WN MI G A+H
Sbjct: 250 REIYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEAWRVFDSLPARGLTTWNCMIGGFAVH 309

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA  +F +ME   V PD +T L +LTAC+H G V EGR+Y +H+ SR+ I+P+ EH
Sbjct: 310 GRCDDALELFHQMEAAGVAPDDVTLLNVLTACAHAGEVSEGRRYLNHIVSRHGIEPKGEH 369

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV---AIVNIS 237
           YG MVDL GRAG ++EA  +I  M M+PD+ V  ALL AC+    ++LGE     ++++ 
Sbjct: 370 YGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVLGALLGACKIHGDVDLGEAIGWRVIDLD 429

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLL+N+     RWD    VR +M ++ V K  G+S +E+ G   +F+ G+  H
Sbjct: 430 PDNSGRYVLLANLLAGAGRWDEVGKVRRLMDERNVSKEAGRSVIEVDGEACEFRCGNLRH 489

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+A+ I  +   ++ R ++EG++P T   L DV+EE+KE  L  HSEKLA+A+G+L+  P
Sbjct: 490 PQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDKEAALLCHSEKLAIAFGLLRARP 549

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              +RI+KNLR+C DCH   K +SR+  R I+VRDR RFH F+ G+CSC DYW
Sbjct: 550 RETLRITKNLRVCRDCHEATKYVSRVFGREIVVRDRSRFHHFKDGMCSCKDYW 602



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 77/176 (43%), Gaps = 12/176 (6%)

Query: 74  LNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM 133
           L+ +    ++    + G +  A+EVFD +   ++  WN+MISG        DA  +F +M
Sbjct: 162 LDVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEM 221

Query: 134 EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGH 193
               V  +       L AC+  G +  GR+ +  +  +  I+   +   A+VD+  + G 
Sbjct: 222 RALGVEGNGFVATSALVACTGAGALGRGREIYRWV-EQSGIEVDAKLATAVVDMYCKCGC 280

Query: 194 IEEAYGLITSMTMEPDVVVWRALL----------SACRTFKRLELGEVAIVNISRL 239
           ++EA+ +  S+     +  W  ++           A   F ++E   VA  +++ L
Sbjct: 281 VDEAWRVFDSLPAR-GLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLL 335


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/415 (46%), Positives = 268/415 (64%), Gaps = 6/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           M  + VVSWN+MI G+ +N  F +A+  FREM   + + P+  T  SV+   +RLG+L  
Sbjct: 227 MRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLEL 286

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             W+H    +  I ++ +L +ALIDMYSKCG I+ A  VF+ + R +V  W+AMI+G AI
Sbjct: 287 GEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAI 346

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG A DA   F KM    V P  + ++ LLTACSH GLVEEGR+YF  M S   ++P++E
Sbjct: 347 HGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIE 406

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HYG MVDLLGR G ++EA   I +M ++PD V+W+ALL ACR  + +E+G+  + NI   
Sbjct: 407 HYGCMVDLLGRLGLLDEAEEFILNMPIKPDDVIWKALLGACRMHRNVEMGK-RVANILMD 465

Query: 240 M----GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           M     G YV LSNMY     W     +R  MK+  +RK  G SW+++ GV+H+F   D 
Sbjct: 466 MVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEMDIRKDPGCSWIDIDGVLHEFLVEDD 525

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SHP A+ I+ +L  +  + +  G+ P T  VL+++ EE+KE  L++HSEK+A A+G++ T
Sbjct: 526 SHPRAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENALHYHSEKMATAFGLIST 585

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           SPG  IRI KNLRIC DCHS IK+IS++ +R I VRDR RFH F+ G CSC DYW
Sbjct: 586 SPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 640



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 127/270 (47%), Gaps = 55/270 (20%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEAL---RFFREMLSSK-VEPDKFTFASVIYGCARLGA 56
           MP ++  SWN++I GF  +   D+AL     F EM+S + +EP++FTF SV+  CA+ G 
Sbjct: 78  MPQRNCFSWNTIIRGFSESDE-DKALIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGK 136

Query: 57  LNHAYWVHNL------------------------------------IIEKKIEL------ 74
           +     +H L                                    IIE+++ +      
Sbjct: 137 IQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRK 196

Query: 75  ---NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFT 131
                +L   +ID Y + G  + A+ +FD +++  V  WN MISG + +G   DA  +F 
Sbjct: 197 RDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFR 256

Query: 132 KMEMF-NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS-IQPQLEHYGAMVDLLG 189
           +M+   ++ P+ +T + +L A S  G +E G   + H+ +  S I+       A++D+  
Sbjct: 257 EMKKGEDIRPNYVTLVSVLPAVSRLGSLELGE--WLHLYAEDSGIRIDDVLGSALIDMYS 314

Query: 190 RAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           + G IE+A  +   +  E +V+ W A+++ 
Sbjct: 315 KCGIIEKAIMVFERLPRE-NVITWSAMING 343


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/418 (45%), Positives = 259/418 (61%), Gaps = 8/418 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K +VSWN MIG +++NA   EA+  +  M +   EPD  +  SV+  C    AL+  
Sbjct: 269 MGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLG 328

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I  KK+  N +L  ALIDMY+KCG ++ A++VF+ ++  DV  W AMIS     
Sbjct: 329 KKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFS 388

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA A+F+K++   ++PDSI F+  L ACSH GL+EEGR  F  M   Y I P+LEH
Sbjct: 389 GRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEH 448

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
              MVDLLGRAG ++EAY  I  M+MEP+  VW ALL ACR     ++G +A   + +L 
Sbjct: 449 LACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLA 508

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    RW+   N+R IMK KG++K+ G S +E+  +IH F  GDRSH
Sbjct: 509 PEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSH 568

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P++  I + L  L+++ K  G++P +E  L DV EE+KE +L  HSEKLA+ + ++ T  
Sbjct: 569 PQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKE 628

Query: 358 GTE-----IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             E     IRI+KNLRIC DCH   K+IS++  R II+RD  RFH F  G+CSCGDYW
Sbjct: 629 EEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 121/279 (43%), Gaps = 10/279 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+++V+  N MI  +V N  + E ++ F  M    V PD +TF  V+  C+  G +   
Sbjct: 100 IPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIG 159

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H    +  +     +   L+ MY KCG +  A+ V D + R DV  WN+++ G A +
Sbjct: 160 RKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQN 219

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               DA  +  +ME   +  D+ T   LL A S+     E   Y   M  +   +  L  
Sbjct: 220 QRFDDALEVCREMESVKISHDAGTMASLLPAVSN--TTTENVMYVKDMFFKMG-KKSLVS 276

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
           +  M+ +  +     EA  L + M     EPD V   ++L AC     L LG+     I 
Sbjct: 277 WNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIE 336

Query: 238 RLMGGDYVLLSN----MYCYLKRWDTAENVREIMKKKGV 272
           R      +LL N    MY      + A +V E MK + V
Sbjct: 337 RKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDV 375



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 2/155 (1%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH+ II + +  N  L   L+  Y+    +  A++VFD +   +V + N MI     +G 
Sbjct: 61  VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGF 120

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +   +F  M   NV PD  TF  +L ACS  G +  GRK      ++  +   L    
Sbjct: 121 YGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSA-TKVGLSSTLFVGN 179

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
            +V + G+ G + EA  ++  M+   DVV W +L+
Sbjct: 180 GLVSMYGKCGFLSEARLVLDEMSRR-DVVSWNSLV 213


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/415 (45%), Positives = 262/415 (63%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  KDV+SWN++IGG      + EAL  F+EML S   P+  T  SV+  CA LGA++  
Sbjct: 258 LAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIG 317

Query: 61  YWVHNLIIE--KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
            W+H  I +  K +     L  +LIDMY+KCG I+ AK+VFD++    +S WNAMI G A
Sbjct: 318 RWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFA 377

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG A  A  +F+KM    + PD ITF+GLL+ACSH G+++ GR  F  M   Y I P+L
Sbjct: 378 MHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKL 437

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           EHYG M+DLLG  G  +EA  +I +M MEPD V+W +LL AC+    +ELGE    N+ +
Sbjct: 438 EHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIK 497

Query: 239 L---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           +     G YVLLSN+Y    RWD    +R ++  KG++K+ G S +E+  V+H+F  GD+
Sbjct: 498 IEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFIIGDK 557

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
            HP  + I ++L  +    +  GF+P T  VL ++ EE KEG L HHSEKLA+A+G++ T
Sbjct: 558 FHPRNREIYRMLEEMEMLMEETGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLIST 617

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            PGT++ I KNLR+C +CH   K+IS++ +R II RDR R H  + G+ SC DYW
Sbjct: 618 KPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRLHLLKDGVWSCHDYW 672



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 133/290 (45%), Gaps = 49/290 (16%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDVVSWN+MI G+V    F EAL  +++M+ + V+PD+ T  +V+  CA+ G++     +
Sbjct: 160 KDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQL 219

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H+ I +     N  +   LID+YSKCG+++ A  +F  + + DV  WN +I G     L 
Sbjct: 220 HSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLY 279

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSH----------------------------- 154
            +A  +F +M      P+ +T L +L AC+H                             
Sbjct: 280 KEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLT 339

Query: 155 --------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT- 205
                   CG +E  ++ FD M +R      L  + AM+      G    A+ L + M  
Sbjct: 340 SLIDMYAKCGDIEAAKQVFDSMLTR-----SLSSWNAMIFGFAMHGKANAAFDLFSKMRK 394

Query: 206 --MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCY 253
             ++PD + +  LLSAC     L+LG     +I R M  DY +   +  Y
Sbjct: 395 NGIDPDDITFVGLLSACSHSGMLDLGR----HIFRSMSQDYKITPKLEHY 440



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 114/248 (45%), Gaps = 33/248 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + + +++ WN+M  G   N+    AL+ +  M+S  + P+ ++F  ++  CA+  AL   
Sbjct: 25  IQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAKSKALIEG 84

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGK----------------------------- 91
             +H  +++   +L+  ++ +LI MY++ G+                             
Sbjct: 85  QQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYASR 144

Query: 92  --IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
             I  A+++FD +   DV  WNAMISG        +A  ++  M   NV PD  T + ++
Sbjct: 145 GYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVV 204

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
           +AC+  G +E GR+    +   +     ++    ++DL  + G +E A GL   +  + D
Sbjct: 205 SACAQSGSIELGRQLHSWIED-HGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLA-KKD 262

Query: 210 VVVWRALL 217
           V+ W  L+
Sbjct: 263 VISWNTLI 270



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 35/171 (20%)

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           +  A  +F+T+Q  ++ +WN M  G A++  +  A  ++  M    +LP+S +F  LL +
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKS 74

Query: 152 CSHCGLVEEGRKYFDH---------------MRSRYSIQPQLE---------------HY 181
           C+    + EG++   H               + S Y+   +LE                Y
Sbjct: 75  CAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSY 134

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA----CRTFKRLEL 228
            A++      G+I  A  L   ++++ DVV W A++S     C   + LEL
Sbjct: 135 TALITGYASRGYINNARKLFDEISVK-DVVSWNAMISGYVETCNFKEALEL 184


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 181/420 (43%), Positives = 261/420 (62%), Gaps = 10/420 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-------SSKVEPDKFTFASVIYGCAR 53
           +P+     WN MI GF  + RF  +L  + +M+       +S V P++ +  SV+  C  
Sbjct: 537 IPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGN 596

Query: 54  LGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAM 113
           LGAL    W H+ +I+   E + +++ A++DMYSKCG + +A+ +FD     D+  W+AM
Sbjct: 597 LGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAM 656

Query: 114 ISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
           I+   IHG    A  +F +M    V P  +TF  +L+ACSH GL+EEG+ YF  M   + 
Sbjct: 657 IASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFV 716

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA- 232
           I  +L +Y  MVDLLGRAG + EA  LI +M +EPD  +W +LL ACR    L+L E   
Sbjct: 717 IARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIA 776

Query: 233 --IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQF 290
             + ++  +  G +VLLSN+Y    RW+  E VR++M ++G  K QG S +E    +H+F
Sbjct: 777 DHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKF 836

Query: 291 KAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAY 350
             GDRSHP+ + +   L  L    K  G++P T+ VL D+ EE KE  L +HSE+LA+A+
Sbjct: 837 GVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAIAF 896

Query: 351 GILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G++ TSPGT +RI+KNLRIC DCH+ IK+IS+++ RVI+VRD  RFHRFE G+CSCGDYW
Sbjct: 897 GLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 956



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 72/130 (55%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDVVSW +++ G+ +N    +++  FR MLS  ++PD      ++   + LG    A  +
Sbjct: 301 KDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCL 360

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  ++      N  + A+LI++YSKCG +  A ++F  +   DV +W++MI+   IHG  
Sbjct: 361 HGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRG 420

Query: 124 ADASAIFTKM 133
            +A  IF +M
Sbjct: 421 GEALEIFDQM 430



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 106/235 (45%), Gaps = 11/235 (4%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE-PDKFTFASVIYGCARLGALNHA 60
           P  +V  WNS +  + R  +++E LR F  M+ +  E PD FT    +  CA L  L   
Sbjct: 63  PHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122

Query: 61  YWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             +H    +  +I  +  + +AL+++YSKCG++  A +VF+  QR D  +W +M++G   
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQ 182

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLG-LLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +    +A A+F++M M +     +  +  LL   +  G  +     F  M  +  I    
Sbjct: 183 NNDPEEALALFSQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVIS--- 239

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGE 230
             +  M+          EA  L   M     EP+ V   + L AC   + LE G+
Sbjct: 240 --WSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGK 292



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 96/219 (43%), Gaps = 37/219 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KDV+SW++MI  +  N   +EAL  F EM+  + EP+  T  S +  CA    L   
Sbjct: 232 MPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEG 291

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H + + K                                   DV  W A++SG A +
Sbjct: 292 KKIHKIAVWK-----------------------------------DVVSWVALLSGYAQN 316

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G+A  +  +F  M    + PD++  + +L A S  G+ ++      ++  R      +  
Sbjct: 317 GMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYV-VRSGFNSNVFV 375

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             ++++L  + G + +A  L   M +  DVV+W ++++A
Sbjct: 376 GASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSSMIAA 413



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 106/271 (39%), Gaps = 68/271 (25%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREM--------------LSSKVEPD----KFTFA 45
           +DVV W+SMI  +  + R  EAL  F +M              +  +V+P       T A
Sbjct: 402 RDVVIWSSMIAAYGIHGRGGEALEIFDQMIQVMQGITSCYQISMQPQVQPPLAITSCTLA 461

Query: 46  SVI-------YGCARLGALNHAYW-------------------VHNLIIEKKIELNFILS 79
           + I       Y  A    L H +W                    + L  + +I   F + 
Sbjct: 462 THIPWKVKAFYMRAHFRWLGH-FWEIFPTYPFQAADMSKSNIFAYGLQYDSRILTKFAI- 519

Query: 80  AALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM------ 133
                MY    +I  A  VF+ +      +WN MI G A  G    +  +++KM      
Sbjct: 520 -----MYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLK 574

Query: 134 -EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH----YGAMVDLL 188
            +   V+P+ ++ L +L AC + G + +G  +       Y IQ   E       A++D+ 
Sbjct: 575 PDNSGVIPNRVSILSVLLACGNLGALRKGEWF-----HSYVIQTGFEFDILVATAIMDMY 629

Query: 189 GRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            + G ++ A  L    T   D+V W A++++
Sbjct: 630 SKCGSLDLARCLFDE-TAGKDLVCWSAMIAS 659



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 94/219 (42%), Gaps = 13/219 (5%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+ + +  I  +   +  L  +Y+KC  +Q A++VFD     +V +WN+ +        
Sbjct: 23  LHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQ 82

Query: 123 AADASAIFTKME-MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
             +   +F  M       PD+ T    L AC+   ++E G+      +    I   +   
Sbjct: 83  WEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVG 142

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM- 240
            A+V+L  + G + EA  +       PD V+W ++++    +++    E A+   S+++ 
Sbjct: 143 SALVELYSKCGQMGEALKVFEEFQ-RPDTVLWTSMVTG---YQQNNDPEEALALFSQMVM 198

Query: 241 ----GGDYVLLS---NMYCYLKRWDTAENVREIMKKKGV 272
                GD  L++   N+Y        A N+   M +K V
Sbjct: 199 MDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDV 237


>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
           trifida]
 gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
          Length = 575

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/415 (44%), Positives = 264/415 (63%), Gaps = 6/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPD+DVVSW S+I GFV N R  EA+R F  M+ + +EP++ T ASV+  CA  GALN  
Sbjct: 162 MPDRDVVSWTSIIDGFVDNDRPIEAIRLFTHMIENGIEPNEVTVASVLRACADTGALNTG 221

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ + EK    N  +S ALIDMY+KCG I  A EVFD     DV VW A+I+G+A H
Sbjct: 222 ERIHSFVKEKNFSSNANVSTALIDMYAKCGCIDGALEVFDETLEKDVYVWTAIIAGLASH 281

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL   A   F  M+  +V  D      +L+A  + GLV EG  +F  ++ ++ I+P ++H
Sbjct: 282 GLCMKAIEFFENMKKSDVKMDERAITAVLSAYRNAGLVSEGLLFFRRLK-KHKIKPTIQH 340

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE-----LGEVAIVN 235
           YG +VD+L RAG +++A   I  M +EPD V+WR L+  C+    +E     + E+ ++N
Sbjct: 341 YGCVVDMLTRAGRLKDAEEFIRKMPIEPDAVLWRTLIWGCKILGDVERSERLVRELELLN 400

Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           +     G YVLL N+Y    +W+     RE+M ++G+ K    S +E+ GV+H+F AGD 
Sbjct: 401 MDSRDTGSYVLLENVYAATGKWEEKAKTRELMYQRGLMKPPACSRIEIDGVVHEFTAGDS 460

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
            H EA A+ + L  + +R + EG+ P    VL+++ ++EK   L HHSEKLA+++G++K+
Sbjct: 461 RHDEATAVYEKLEDVEERLRGEGYNPIVSEVLLEIDDDEKASQLLHHSEKLAVSFGLVKS 520

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           SPG+ IRI KNLR C DCHS++K+IS++ +R IIVRDRIRFH F GG CSCGD W
Sbjct: 521 SPGSVIRIVKNLRSCEDCHSFMKLISKVYQRDIIVRDRIRFHHFSGGNCSCGDRW 575



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 100/217 (46%), Gaps = 8/217 (3%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSK------VEPDKFTFASVIYGCARLGALNHAYW 62
           +N+MI  +  +     A   F  M +          PD FT+  V+  C++ G       
Sbjct: 63  YNTMIRAYSDSTDPTRAFTLFLYMQNPDDASVAVPRPDHFTYPFVLKACSKSGHARFGKQ 122

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H L+ +  +  +  ++ ALI +YS  G+  +A +VFD +   DV  W ++I G   +  
Sbjct: 123 IHGLVFKSGVGSDRYINNALIHLYSVSGEPNLAYKVFDKMPDRDVVSWTSIIDGFVDNDR 182

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +FT M    + P+ +T   +L AC+  G +  G +    ++ + +         
Sbjct: 183 PIEAIRLFTHMIENGIEPNEVTVASVLRACADTGALNTGERIHSFVKEK-NFSSNANVST 241

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A++D+  + G I+ A  +    T+E DV VW A+++ 
Sbjct: 242 ALIDMYAKCGCIDGALEVFDE-TLEKDVYVWTAIIAG 277


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/409 (45%), Positives = 253/409 (61%), Gaps = 3/409 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +VVSW S++   V+N +  EA+ FFREM +   EP+  T   V+   A + AL H    H
Sbjct: 257 NVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAH 316

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
              + K    +  +S+AL+DMY+KCG+++ A+ +FDT+   +V  WNAMI G A++G A 
Sbjct: 317 CFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAV 376

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           +A  +F  M      PD +TF  LL AC+  GL EEGR YF  M + Y + P++EHY  M
Sbjct: 377 NAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACM 436

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---MG 241
           V LLGRAG ++EAY LI+ M  EPD  +W +LL +CR    ++L EVA   +  L     
Sbjct: 437 VTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPENA 496

Query: 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
           G+YVLLSN+Y   K WD    VRE+MK  G++K +G SW+E+   +H   AGD SHP   
Sbjct: 497 GNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIEIKNKVHMLLAGDDSHPMMT 556

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
           AI + +  L  + +  GF+P+T+ VL DV E+EK+  L  HSEKLA+A G++ TSPGT +
Sbjct: 557 AIIEKINQLNIQMRKLGFVPSTDFVLHDVEEQEKDDILAVHSEKLAVALGLISTSPGTTL 616

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           R+ KNLRIC DCH  +K IS    R I VRD  RFH F GG CSCGD+W
Sbjct: 617 RVIKNLRICGDCHEAMKFISSFEGREISVRDTNRFHHFSGGKCSCGDFW 665



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 79/170 (46%), Gaps = 1/170 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKV-EPDKFTFASVIYGCARLGALNHAY 61
           + +V++WN ++ G  R+ R  +A+     M    +  PD    +  +     +G ++   
Sbjct: 118 EPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQ 177

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H   ++     +  +  ALIDMY KCG+      VFD     DV+  NA+I+G++ + 
Sbjct: 178 QLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNA 237

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR 171
              +A  +F +     V  + +++  ++  C   G   E  ++F  M+++
Sbjct: 238 QVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQ 287



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  ++VVSWN+MIGG+        A+  F  ML  K +PD  TF  ++  C + G     
Sbjct: 354 MVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEG 413

Query: 61  -YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF-DTVQRNDVSVWNAMISGVA 118
            ++   +  E  +       A ++ +  + GK+  A ++  D     D  +W +++    
Sbjct: 414 RHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCR 473

Query: 119 IHG 121
           +HG
Sbjct: 474 VHG 476


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/413 (44%), Positives = 257/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +KD+V+W++MI G+  N+   E +  F +ML   ++PD+F+    +  CA LGAL+  
Sbjct: 273 MVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLG 332

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W  +LI   +   N  ++ ALIDMY+KCG +    EVF  ++  D+ + NA ISG+A +
Sbjct: 333 EWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKN 392

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    + A+F + E   + PD  TFLGLL  C H GL+++G ++F+ +   Y+++  +EH
Sbjct: 393 GHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEH 452

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDL GRAG +++AY LI  M M P+ +VW ALLS CR  K  +L E  +  +  L 
Sbjct: 453 YGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALE 512

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G+YV LSN+Y    RWD A  VR++M KKG++K  G SW+EL G +H+F A D+SH
Sbjct: 513 PWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSH 572

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P +  I   L  L    +  GF+P TE V  DV EEEKE  L +HSEKLA+A G++ T  
Sbjct: 573 PLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDH 632

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH  +K+IS++ RR I+VRD  RFH F  G CSC DYW
Sbjct: 633 GQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 117/219 (53%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +PD+ VV+W ++  G+  + R  EA+  F++M+   V+PD +    V+  C  +G L+  
Sbjct: 172 IPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSG 231

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+   + E +++ N  +   L+++Y+KCGK++ A+ VFD++   D+  W+ MI G A +
Sbjct: 232 EWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASN 291

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +   +F +M   N+ PD  + +G L++C+  G ++ G ++   +  R+     L  
Sbjct: 292 SFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLG-EWGISLIDRHEFLTNLFM 350

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++D+  + G +   + +   M  E D+V+  A +S 
Sbjct: 351 ANALIDMYAKCGAMARGFEVFKEMK-EKDIVIMNAAISG 388



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 8/218 (3%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           ++  +NS+I GFV N  F E L  F  +    +    FTF  V+  C R  +      +H
Sbjct: 75  NIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLH 134

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
           +L+++     +     +L+ +YS  G++  A ++FD +    V  W A+ SG    G   
Sbjct: 135 SLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHR 194

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---KYFDHMRSRYSIQPQLEHY 181
           +A  +F KM    V PDS   + +L+AC H G ++ G    KY + M     +Q      
Sbjct: 195 EAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEME----MQKNSFVR 250

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +V+L  + G +E+A  +  SM +E D+V W  ++  
Sbjct: 251 TTLVNLYAKCGKMEKARSVFDSM-VEKDIVTWSTMIQG 287


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/413 (42%), Positives = 261/413 (63%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  D V+W ++I G V N   ++AL  + +M  + V+PD++TFA+++  C+ L AL   
Sbjct: 561 IPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQG 620

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I++     +  +  +L+DMY+KCG I+ A  +F  +    V++WNAMI G+A H
Sbjct: 621 KQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQH 680

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +A   F +M+   V PD +TF+G+L+ACSH GL  +  K FD M+  Y ++P++EH
Sbjct: 681 GNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEH 740

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  +VD L RAGHI+EA  +++SM  E    ++R LL+ACR     E GE     +  + 
Sbjct: 741 YSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMD 800

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D   YVLLSN+Y    +W+ A + R +MK+  V+K  G SW+++   +H F AGDRSH
Sbjct: 801 PSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSH 860

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            E   I   +  +++R K EG++P TE  L+D+ EE+KE  L +HSEKLA+AYG++KT P
Sbjct: 861 EETDLIYNKVEYVMKRIKEEGYVPDTEFALVDIEEEDKESALSYHSEKLAIAYGLMKTPP 920

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T +R+ KNLR+C DCH+ IK IS + +R I++RD  RFH F  G+CSCGDYW
Sbjct: 921 STTLRVIKNLRVCGDCHNAIKYISNVFQREIVLRDANRFHHFRSGICSCGDYW 973



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 113/214 (52%), Gaps = 4/214 (1%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D+ SWN+M+ GF  +  + EALR F  M     + D+ TFA+       L  L     +H
Sbjct: 464 DLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIH 523

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
            ++I+ +   +  + + ++DMY KCG+++ A++VF+ +   D   W  +ISG   +G   
Sbjct: 524 AVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEE 583

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLEHYGA 183
            A   + +M +  V PD  TF  L+ ACS    +E+G++ + + M+   +  P +    +
Sbjct: 584 QALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFV--MTS 641

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           +VD+  + G+IE+AYGL   M     V +W A++
Sbjct: 642 LVDMYAKCGNIEDAYGLFRRMNTR-SVALWNAMI 674



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 113/227 (49%), Gaps = 15/227 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M + D++SWN++I G  R+   + +LR F ++L S + PD+FT  SV+  C+   +L  +
Sbjct: 358 MKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACS---SLEES 414

Query: 61  Y----WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
           Y     VH   ++  I L+  +S ALID+YSK GK++ A+ +F      D++ WNAM+ G
Sbjct: 415 YCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHG 474

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD---HMRSRYS 173
             +     +A  +F+ M       D ITF     A      +++G++       MR  Y 
Sbjct: 475 FTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHY- 533

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
               L     ++D+  + G ++ A  +   +   PD V W  ++S C
Sbjct: 534 ---DLFVISGILDMYLKCGEMKSARKVFNQIP-SPDDVAWTTVISGC 576



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D DV  WN  +  +++     EA+  FR+M+ S+V  D  T+  ++   A L  L     
Sbjct: 259 DSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQ 318

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  ++    +    ++ + I+MY K G +  A+ +F  ++  D+  WN +ISG A  GL
Sbjct: 319 IHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGL 378

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACS 153
              +  +F  +    +LPD  T   +L ACS
Sbjct: 379 EECSLRLFIDLLRSGLLPDQFTITSVLRACS 409



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 92/220 (41%), Gaps = 29/220 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVV WN M+  +V     DE L  F     S + PD  +  +++ G  +       
Sbjct: 183 MPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGK------- 235

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                 + E+++E         +  Y        A ++F     +DV+VWN  +S     
Sbjct: 236 ----KTVFERELE--------QVRAY--------ATKLFVCDDDSDVTVWNKTLSSYLQA 275

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A   F  M    V  DS+T++ +L+  +    +E G++    +  R+     +  
Sbjct: 276 GEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAV-VRFGWDQFVSV 334

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
             + +++  +AG +  A  +   M  E D++ W  ++S C
Sbjct: 335 ANSAINMYVKAGSVNYARRMFGQMK-EVDLISWNTVISGC 373



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/153 (19%), Positives = 73/153 (47%), Gaps = 6/153 (3%)

Query: 3   DKDVVSWNSMIGGFVRNA------RFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA 56
           D+D+V++N+++  +          +  EA   FR +  S +   + T + +   C   G+
Sbjct: 78  DRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGS 137

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
            + +  +    ++  ++ +  ++ AL+++Y+K  +I+ A+ +FD +   DV +WN M+  
Sbjct: 138 PSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKA 197

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
               G   +   +F+      + PD ++   +L
Sbjct: 198 YVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTIL 230



 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 10/165 (6%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN--DVSVWNAMISGVAIH 120
            H +I+   +  +  ++  LI MY+KCG +  A+++FD   ++  D+  +NA+++  A  
Sbjct: 35  THAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHT 94

Query: 121 GLAADASAIFTKMEMFNVLPDSI------TFLGLLTACSHCGLVEEGRKYFDHMRSRYSI 174
           G   D         +F +L  S+      T   L   C   G      +       +  +
Sbjct: 95  GELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYG-SPSASEALQGYAVKIGL 153

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           Q  +   GA+V++  +   I EA  L   M +  DVV+W  ++ A
Sbjct: 154 QWDVFVAGALVNIYAKFQRIREARVLFDRMPVR-DVVLWNVMMKA 197


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/412 (45%), Positives = 269/412 (65%), Gaps = 10/412 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D+VS+N+MI G+    + + AL  F EM +S    D+ T  +V+  CARLGA +    +
Sbjct: 99  RDLVSYNTMIKGYAEVNQPESALCLFGEMQNS----DEVTLVAVLSACARLGAFDLGKRL 154

Query: 64  HNLIIEKKI-ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS--VWNAMISGVAIH 120
           ++  IE  +   N IL+AA++DMY+KCG I  A E+F  V +N  +  V+N+MI+G+A H
Sbjct: 155 YHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQH 214

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL   A  +F ++    + PD +TF+G+L AC H GL+EEG+K F+ M + Y I+PQ+EH
Sbjct: 215 GLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEH 274

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDLLGR G +EEAY L+  M  E + V+WRALLSACRT   +++GE+A   ++ + 
Sbjct: 275 YGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEME 334

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              G  YVLLSN+     +W+ A  VR++M+  G+RK  G S++EL G IH+F A D+SH
Sbjct: 335 AQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSH 394

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I+ +L  +  R KS G++P T  V+ D+ EEEKE  + +HSEKLALA+G++  SP
Sbjct: 395 PQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSP 454

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDY 409
              IRI KNLRIC DCH   K++S +  R I VRD +RFH F  G CSC D+
Sbjct: 455 TDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDF 506



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 94/190 (49%), Gaps = 5/190 (2%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKV-EPDKFTFASVIYGCARLGALNHAYWVHNLI 67
           WN+MI G+ R+    EA+  +  M++  +  P+ FTF  ++  CARL +L   + VH+ I
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 68  IEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADAS 127
           I+   E +  +  ALI +YS  G + +A+ +FD     D+  +N MI G A       A 
Sbjct: 62  IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESAL 121

Query: 128 AIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDL 187
            +F +M+      D +T + +L+AC+  G  + G++ +                 A++D+
Sbjct: 122 CLFGEMQN----SDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDM 177

Query: 188 LGRAGHIEEA 197
             + G I+ A
Sbjct: 178 YAKCGSIDSA 187


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/418 (44%), Positives = 265/418 (63%), Gaps = 9/418 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M DKDV+ WN+MIGG+   + ++EAL  F  ML   V P+  TF +V+  CA LGAL+  
Sbjct: 320 MEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLG 379

Query: 61  YWVHNLIIEKKIE-----LNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
            WVH   I+K ++      N  L  ++I MY+KCG +++A++VF ++    ++ WNAMIS
Sbjct: 380 KWVH-AYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMIS 438

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           G+A++G A  A  +F +M      PD ITF+G+L+AC+  G VE G +YF  M   Y I 
Sbjct: 439 GLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGIS 498

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVN 235
           P+L+HYG M+DLL R+G  +EA  L+ +M MEPD  +W +LL+ACR   ++E GE     
Sbjct: 499 PKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAER 558

Query: 236 ISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKA 292
           +  L     G YVLLSN+Y    RWD    +R  +  KG++K  G + +E+ GV+H+F  
Sbjct: 559 LFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLV 618

Query: 293 GDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGI 352
           GD+ HP+++ I ++L  + +  +  GF+P T  VL D+ EE KEG L  HSEKLA+A+G+
Sbjct: 619 GDKFHPQSENIFRMLDEVDRLLEETGFVPDTSEVLYDMDEEWKEGALTQHSEKLAIAFGL 678

Query: 353 LKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + T PG+ IRI KNLR+C +CHS  K+IS++  R II RDR RFH F+ G CSC D W
Sbjct: 679 ISTKPGSTIRIVKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGFCSCNDRW 736



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/271 (33%), Positives = 129/271 (47%), Gaps = 47/271 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KDVVSWN+MI G+V++ RF+EAL  F  M  + V P++ T  SV+  C  L +L   
Sbjct: 219 IPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELG 278

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+ + + ++    N  L  AL+DMYSKCG+I  A+++FD ++  DV +WN MI G    
Sbjct: 279 KWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHL 338

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTAC---------------------------- 152
            L  +A  +F  M   NV P+ +TFL +L AC                            
Sbjct: 339 SLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNN 398

Query: 153 -----------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
                      + CG VE   + F  M SR      L  + AM+  L   GH E A GL 
Sbjct: 399 VSLWTSIIVMYAKCGCVEVAEQVFRSMGSR-----SLASWNAMISGLAMNGHAERALGLF 453

Query: 202 TSMTME---PDVVVWRALLSACRTFKRLELG 229
             M  E   PD + +  +LSAC     +ELG
Sbjct: 454 EEMINEGFQPDDITFVGVLSACTQAGFVELG 484



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 117/262 (44%), Gaps = 36/262 (13%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
            ++  WN++I           +L  F +ML S + P+  TF S+   CA+  A + A  +
Sbjct: 90  PNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQL 149

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT---------------------- 101
           H   ++  + L+  +  +LI MYS+ G+++ A+ VFD                       
Sbjct: 150 HAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHV 209

Query: 102 ---------VQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC 152
                    +   DV  WNAMI+G    G   +A A FT+M+  +V P+  T + +L+AC
Sbjct: 210 DDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSAC 269

Query: 153 SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
            H   +E G+     +R R      L+   A+VD+  + G I  A  L   M  + DV++
Sbjct: 270 GHLRSLELGKWIGSWVRDR-GFGKNLQLVNALVDMYSKCGEIGTARKLFDGME-DKDVIL 327

Query: 213 WRALLSACRTFKRLELGEVAIV 234
           W  ++     +  L L E A+V
Sbjct: 328 WNTMIGG---YCHLSLYEEALV 346



 Score = 42.4 bits (98), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 31/162 (19%), Positives = 73/162 (45%), Gaps = 8/162 (4%)

Query: 63  VHNLIIEKKIELNFILSAALIDM--YSKCGKIQMAKEVFDTV--QRNDVSVWNAMISGVA 118
           +H+LII+  +       + LI+    S    +  A  +F ++  Q  ++ +WN +I   +
Sbjct: 44  IHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRAHS 103

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQ 177
           +      +  +F++M    + P+S TF  L  +C+      E ++   H ++    + P 
Sbjct: 104 LTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPH 163

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +  + +++ +  + G +  A  +    T+  D V + AL++ 
Sbjct: 164 V--HTSLIHMYSQVGELRHARLVFDKSTLR-DAVSFTALITG 202


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/412 (42%), Positives = 258/412 (62%), Gaps = 3/412 (0%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P+K + SWN+MI G+ +N   ++A+  FREM +S+  P+  T   ++  CA+LGAL+   
Sbjct: 381 PEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGK 440

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           WVH+L+     E +  +S ALI MY+KCG I  A+ +FD + + +   WN MISG  +HG
Sbjct: 441 WVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHG 500

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              +A  IF++M    + P  +TFL +L ACSH GLV+EG + F+ M  RY  +P ++HY
Sbjct: 501 HGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHY 560

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
             +VD+LGRAGH++ A   I +M ++P   VW  LL ACR  K   L       +  L  
Sbjct: 561 ACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELDP 620

Query: 242 ---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
              G +VLLSN++   + +  A  VR+  KK+ + K+ G + +E+    H F +GD+SHP
Sbjct: 621 DNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHP 680

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           + +AI + L  L  + +  G+ P TEL L DV EEE+E  +  HSE+LA+A+G++ T PG
Sbjct: 681 QVKAIHEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPG 740

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           TEIRI KNLR+C DCH+  K+IS++  RVI+VRD  RFH F+ G+CSCGDYW
Sbjct: 741 TEIRIIKNLRVCLDCHTATKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 108/215 (50%), Gaps = 5/215 (2%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D+V++N+MI G+  N   + +L  F+E++ S  +    T  S++      G L   Y +H
Sbjct: 286 DIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLV---PVSGHLMLIYAIH 342

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
              ++     +  +S AL  +YSK  +I+ A+++FD      +  WNAMISG   +GL  
Sbjct: 343 GYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTE 402

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           DA ++F +M+     P+ +T   +L+AC+  G +  G+   D +RS    +  +    A+
Sbjct: 403 DAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRST-DFESSIYVSTAL 461

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           + +  + G I EA  L   M  + + V W  ++S 
Sbjct: 462 IGMYAKCGSIAEARRLFDFMPKKNE-VTWNTMISG 495



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 113/266 (42%), Gaps = 41/266 (15%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           MP+KD + WN+MI G+ +N  + E+++ FR++++ S    D  T   ++   A L  L  
Sbjct: 180 MPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRL 239

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H+L  +     +  +    I +YSKCGKI+MA  +F   +R D+  +NAMI G   
Sbjct: 240 GMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTS 299

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL---------------------- 157
           +G    + ++F ++ +      S T + L+    H  L                      
Sbjct: 300 NGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTA 359

Query: 158 ----------VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT-- 205
                     +E  RK FD      S +  L  + AM+    + G  E+A  L   M   
Sbjct: 360 LTTVYSKLNEIESARKLFDE-----SPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNS 414

Query: 206 -MEPDVVVWRALLSACRTFKRLELGE 230
              P+ V    +LSAC     L LG+
Sbjct: 415 EFSPNPVTITCILSACAQLGALSLGK 440



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 4/152 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP K+ V+WN+MI G+  +    EAL  F EML+S + P   TF  V+Y C+  G +   
Sbjct: 481 MPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEG 540

Query: 61  YWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             + N +I +   E +    A ++D+  + G +Q A +  + +  +   SVW  ++    
Sbjct: 541 DEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACR 600

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150
           IH     A  +  K  +F + PD++ +  LL+
Sbjct: 601 IHKDTNLARTVSEK--LFELDPDNVGYHVLLS 630



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 6/227 (2%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           DV  +N ++ GF  N     +L  F  +  S+ ++P+  T+A  I   +          +
Sbjct: 82  DVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVI 141

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   I    +   +L + ++ MY K  +++ A++VFD +   D  +WN MISG   + + 
Sbjct: 142 HGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMY 201

Query: 124 ADASAIFTKM--EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
            ++  +F  +  E    L D+ T L +L A +    +  G +    + ++          
Sbjct: 202 VESIQVFRDLINESCTRL-DTTTLLDILPAVAELQELRLGMQ-IHSLATKTGCYSHDYVL 259

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLEL 228
              + L  + G I+ A  L       PD+V + A++    +    EL
Sbjct: 260 TGFISLYSKCGKIKMASTLFREF-RRPDIVAYNAMIHGYTSNGETEL 305



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 77/175 (44%), Gaps = 13/175 (7%)

Query: 53  RLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA 112
           R  +++H    H  I+      +  L   L    S  G I  A+++F +VQR DV ++N 
Sbjct: 29  RSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNV 88

Query: 113 MISGVAIHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACS-----HCGLVEEGRKYFD 166
           ++ G +++     + A+F  + +  ++ P+S T+   ++A S       G V  G+   D
Sbjct: 89  LMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIVD 148

Query: 167 HMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACR 221
              S   +   +      V +  +   +E+A  +   M  E D ++W  ++S  R
Sbjct: 149 GCDSELLLGSNI------VKMYFKFWRVEDARKVFDRMP-EKDTILWNTMISGYR 196


>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
          Length = 602

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/413 (43%), Positives = 260/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +++VSWNSMI G+V+  RF +AL  F EM +  VE + F   S +  C   GAL   
Sbjct: 190 MPARNLVSWNSMISGYVKADRFLDALEVFDEMRALGVEGNGFVATSALVACTGAGALGRG 249

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             ++  + +  IE++  L+ A++DMY KCG +  A  VFD++    ++ WN MI G A+H
Sbjct: 250 REIYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEAWGVFDSLPARGLTTWNCMIGGFAVH 309

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA  +F +ME   V PD +T L +LTAC+H G V EGR+Y +H+ SR+ I+P+ EH
Sbjct: 310 GRCDDALELFHQMEAAGVAPDDVTLLNVLTACAHAGEVSEGRRYLNHIVSRHGIEPKGEH 369

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDL GRAG ++EA  +I  M M+PD+ V  ALL AC+    ++LGE     ++++ 
Sbjct: 370 YGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVLGALLGACKIHGDVDLGEAIGWRVIDLD 429

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLL+N+     RWD    VR +M ++ V K  G+S +E+ G   +F+ G+  H
Sbjct: 430 PDNSGRYVLLANLLAGAGRWDEVGKVRRLMDERNVSKEAGRSVIEVDGEACEFRCGNLRH 489

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+A+ I  +   ++ R ++EG++P T   L DV+EE+KE  L  HSEKLA+A+G+L+  P
Sbjct: 490 PQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDKEAALLCHSEKLAIAFGLLRARP 549

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              +RI+KNLR+C DCH   K +SR+  R I+VRDR RFH F+ G+CSC DYW
Sbjct: 550 RETLRITKNLRVCRDCHEATKYVSRVFGREIVVRDRSRFHHFKDGMCSCKDYW 602



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 12/176 (6%)

Query: 74  LNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM 133
           L+ +    ++    + G +  A+EVFD +   ++  WN+MISG        DA  +F +M
Sbjct: 162 LDVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEM 221

Query: 134 EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGH 193
               V  +       L AC+  G +  GR+ +  +  +  I+   +   A+VD+  + G 
Sbjct: 222 RALGVEGNGFVATSALVACTGAGALGRGREIYRWV-EQSGIEVDAKLATAVVDMYCKCGC 280

Query: 194 IEEAYGLITSMTMEPDVVVWRALL----------SACRTFKRLELGEVAIVNISRL 239
           ++EA+G+  S+     +  W  ++           A   F ++E   VA  +++ L
Sbjct: 281 VDEAWGVFDSLPAR-GLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLL 335


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/413 (44%), Positives = 263/413 (63%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D+V+W  MIGG+      +E+L  F +M    V PDK    +V++ CA+LGA++ A
Sbjct: 293 MPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKA 352

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             + + I  KK +L+ IL  A+IDM++KCG ++ A+E+FD ++  +V  W+AMI+    H
Sbjct: 353 RTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH 412

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F  M    +LP+ IT + LL ACSH GLVEEG ++F  M   YS++  ++H
Sbjct: 413 GQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKH 472

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  +VDLLGRAG ++EA  LI SMT+E D  +W A L ACRT K + L E A  ++  L 
Sbjct: 473 YTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQ 532

Query: 241 ---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y+LLSN+Y    RW+     R++M ++ ++K  G +W+E+    HQF  GD +H
Sbjct: 533 PQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTH 592

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P ++ I ++L SL  + +  G++P T  VL DV EE K G LY HSEKLA+A+G++ T  
Sbjct: 593 PRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPE 652

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T IRI KNLR+C DCH++ K++S +  RVIIVRD  RFH F+ G CSCGDYW
Sbjct: 653 HTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 705



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 126/221 (57%), Gaps = 6/221 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D+V+W  MIGG+    + +E+L  F +M    V PDK    +V++ CA+LGA++ A
Sbjct: 91  MQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKA 150

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             + + I  KK +L+ IL  A+IDMY+KCG ++ A+E+FD ++  +V  W+AMI+    H
Sbjct: 151 RIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH 210

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F  M    +LPD IT   LL ACS    ++ GR    H+  ++ +   L+H
Sbjct: 211 GQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGR-LIHHIVYKFGL--DLDH 267

Query: 181 Y--GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +   A+VD+ G+   IE+A  L   M  E D+V W  ++  
Sbjct: 268 FVCAALVDMYGKCREIEDARFLFDKMP-ERDLVTWTVMIGG 307



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 126/219 (57%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +K+V+SW++MI  +  + +  +AL  FR MLSS + PDK T AS++Y C+ L  L   
Sbjct: 192 MEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMG 251

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+++ +  ++L+  + AAL+DMY KC +I+ A+ +FD +   D+  W  MI G A  
Sbjct: 252 RLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAEC 311

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A ++  +F KM    V+PD +  + ++ AC+  G + + R   D+++ R   Q  +  
Sbjct: 312 GNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQ-RKKFQLDVIL 370

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             AM+D+  + G +E A  +   M  E +V+ W A+++A
Sbjct: 371 GTAMIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAA 408



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 110/208 (52%), Gaps = 2/208 (0%)

Query: 12  MIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKK 71
           M+GGF +   +      FRE++     PD +T   VI  C  L  L     +H+++ +  
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 72  IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFT 131
           ++L+  + AAL+DMY KC +I+ A+ +FD +Q  D+  W  MI G A  G A ++  +F 
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 132 KMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRA 191
           KM    V+PD +  + ++ AC+  G + + R   D+++ R   Q  +    AM+D+  + 
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQ-RKKFQLDVILGTAMIDMYAKC 179

Query: 192 GHIEEAYGLITSMTMEPDVVVWRALLSA 219
           G +E A  +   M  E +V+ W A+++A
Sbjct: 180 GCVESAREIFDRME-EKNVISWSAMIAA 206


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/413 (44%), Positives = 266/413 (64%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M   +V+ WN+MI G+ +N   +EA+  F  M+S  ++PD  T  S +   A++G+L  A
Sbjct: 316 MKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELA 375

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+ + + +     +  ++ +LIDMY+KCG ++ A+ VFD     DV +W+AMI G  +H
Sbjct: 376 QWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLH 435

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  ++  M+   V P+ +TF+GLLTAC+H GLV+EG + F  M+  + I P+ EH
Sbjct: 436 GQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCMKD-FEIVPRNEH 494

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  +VDLLGRAG++ EA   I  + +EP V VW ALLSAC+ ++ + LGE A   + ++ 
Sbjct: 495 YSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYAANKLFSLD 554

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YV LSN+Y     WD   +VR +M++KG+ K  G S +E+ G +  F  GD+SH
Sbjct: 555 PYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFHVGDKSH 614

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P A+ I   L  L +R K  GF+P TE VL D++ EEKE NL  HSE++A+AYG++ T+P
Sbjct: 615 PMAKEIFDELQRLERRLKEVGFVPYTESVLHDLNYEEKEENLSFHSERIAVAYGLISTAP 674

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT +RI+KNLR C +CHS IK+IS+L+ R IIVRD  RFH F+ GLCSCGDYW
Sbjct: 675 GTTLRITKNLRACVNCHSAIKLISKLVEREIIVRDANRFHHFKDGLCSCGDYW 727



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 114/214 (53%), Gaps = 2/214 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           + +VSW S+I G+ +N +  EALR F +M ++ V+PD     S++     +  L     +
Sbjct: 218 RTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSI 277

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I+  +E    L  +L   Y+KCG + +AK  FD ++  +V +WNAMISG A +G A
Sbjct: 278 HGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHA 337

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F  M   N+ PDS+T    + A +  G +E   ++ D   S+ +    +    +
Sbjct: 338 EEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELA-QWMDDYVSKSNYGSDIFVNTS 396

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           ++D+  + G +E A  +    + + DVV+W A++
Sbjct: 397 LIDMYAKCGSVEFARRVFDRNS-DKDVVMWSAMI 429



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 116/264 (43%), Gaps = 43/264 (16%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           DV  WN++I  + RN  + + +  +R M  + V PD FTF  V+  C  L     +  +H
Sbjct: 118 DVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIH 177

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             II+     +  +   L+ +Y+KCG I +AK VFD +    +  W ++ISG A +G A 
Sbjct: 178 GQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAV 237

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACS------------------------------- 153
           +A  +F++M    V PD I  + +L A +                               
Sbjct: 238 EALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLT 297

Query: 154 ----HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL---ITSMTM 206
                CGLV   + +FD M++   I      + AM+    + GH EEA  L   + S  +
Sbjct: 298 AFYAKCGLVTVAKSFFDQMKTTNVIM-----WNAMISGYAKNGHAEEAVNLFHYMISRNI 352

Query: 207 EPDVVVWRALLSACRTFKRLELGE 230
           +PD V  R+ + A      LEL +
Sbjct: 353 KPDSVTVRSAVLASAQVGSLELAQ 376



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 91/207 (43%), Gaps = 19/207 (9%)

Query: 26  LRFFREM-LSSKVEPDKFT-----------FASVIYGCARLGALNHAYWVHNLIIEKKIE 73
           L+F + +  SS + P+ F            +AS+I        L+    +HN ++   ++
Sbjct: 29  LKFVKYLCFSSALHPEHFVNHDHCFNSDSFYASLIDNSTHKRHLDQ---IHNRLVISGLQ 85

Query: 74  LNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM 133
            N  L   L++  S  G+I  A+++FD     DV +WNA+I   + + +  D   ++  M
Sbjct: 86  HNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWM 145

Query: 134 EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR-SRYSIQPQLEHYGAMVDLLGRAG 192
               V PD  TF  +L AC+   L++ G     H +  +Y     +     +V L  + G
Sbjct: 146 RWTGVHPDGFTFPYVLKACTE--LLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCG 203

Query: 193 HIEEAYGLITSMTMEPDVVVWRALLSA 219
           HI  A  +   +     +V W +++S 
Sbjct: 204 HIGVAKVVFDGL-YHRTIVSWTSIISG 229


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/417 (43%), Positives = 269/417 (64%), Gaps = 9/417 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLGALNH 59
           M ++D+VSWN MI G+ ++    +AL  F+++L+  K +PD+ T  + +  C+++GAL  
Sbjct: 216 MCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALET 275

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             W+H  +   +I LN  +  ALIDMYSKCG ++ A  VF+   R D+  WNAMI+G A+
Sbjct: 276 GRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAM 335

Query: 120 HGLAADASAIFTKMEMFNVL-PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           HG + DA  +F +M+    L P  ITF+G L AC+H GLV EG + F+ M   Y I+P++
Sbjct: 336 HGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKI 395

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG-EVAIV--- 234
           EHYG +V LLGRAG ++ AY +I +M ME D V+W ++L +C+      LG E+A     
Sbjct: 396 EHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIG 455

Query: 235 -NISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
            NIS    G YVLLSN+Y  +  ++    VR +MK+KG+ K  G S +E+   +H+F+AG
Sbjct: 456 QNISN--SGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAG 513

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           DR H +++ I  +L  + +R KS G++P T  VL D+ E EKE +L  HSE+LA+AYG++
Sbjct: 514 DREHLKSKEIYTMLRKMSERIKSHGYVPNTNTVLHDLEETEKERSLQVHSERLAIAYGLI 573

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T PG+ ++I KNLR+C DCH+  K+IS++  R I++RDR RFH F  G CSC D+W
Sbjct: 574 STKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFSDGSCSCDDFW 630



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 120/248 (48%), Gaps = 36/248 (14%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA-RLGALNHAY 61
           D D+  + + I     N   D+A   + ++LSS++ P++FTF+S++  C+ + G L H +
Sbjct: 90  DPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCSTKSGKLIHTH 149

Query: 62  WVH--------------------------NLIIEKKIELNFILSAALIDMYSKCGKIQMA 95
            +                             + ++  E + + S A+I  Y+K G ++ A
Sbjct: 150 VLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAA 209

Query: 96  KEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTK-MEMFNVLPDSITFLGLLTACSH 154
           + +FD +   D+  WN MI G + HG  +DA  +F K +      PD IT +  L+ACS 
Sbjct: 210 RALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQ 269

Query: 155 CGLVEEGR---KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
            G +E GR    + +  R R +++       A++D+  + G +EEA  L+ + T   D+V
Sbjct: 270 IGALETGRWIHVFVNSSRIRLNVKV----CTALIDMYSKCGSLEEAV-LVFNDTPRKDIV 324

Query: 212 VWRALLSA 219
            W A+++ 
Sbjct: 325 AWNAMITG 332



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 40/185 (21%)

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           HNL+I  +     +L+  L   Y+  GKI+ +  +F      D+ ++ A I+  +I+GL 
Sbjct: 53  HNLLIHPRYP---VLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLK 109

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSH----------------------CGLVE-- 159
             A  ++ ++    + P+  TF  +L +CS                        GLV+  
Sbjct: 110 DQAFLLYVQLLSSQINPNEFTFSSILKSCSTKSGKLIHTHVLKFGLGLDPYVATGLVDIY 169

Query: 160 -------EGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
                    +K FD M  R      L    AM+    + G++E A  L   M  E D+V 
Sbjct: 170 AKGGDVVSAQKVFDRMPER-----SLVSSTAMITCYAKQGNVEAARALFDRMC-ERDIVS 223

Query: 213 WRALL 217
           W  ++
Sbjct: 224 WNVMI 228


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/417 (45%), Positives = 265/417 (63%), Gaps = 11/417 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD VS+++++ G+V+N R +EA   F++M +  VEPD  T  S+I  C+ L AL H 
Sbjct: 286 MAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHG 345

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H  +I + +     +  ALIDMY+KCG+I ++++VF+ +   D+  WN MI+G  IH
Sbjct: 346 RCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIH 405

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A+A+F +M      PD +TF+ LL+ACSH GLV EG+ +F  M   Y + P++EH
Sbjct: 406 GLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEH 465

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MVDLL R G ++EAY  I SM +  DV VW ALL ACR +K ++LG+     +SR++
Sbjct: 466 YICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGK----KVSRMI 521

Query: 241 -------GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
                   G++VLLSN+Y    R+D A  VR I K +G +KS G SW+E+ G +H F  G
Sbjct: 522 QELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGG 581

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           D+SHP++  I + L +++   K  G+ P T  VL D+ EEEKE  L  HSEKLA+AYGIL
Sbjct: 582 DQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGIL 641

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             S    I ++KNLR+C DCH+ IK IS + RR IIVRD  RFH F+ G CSCGD+W
Sbjct: 642 SLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 698



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 113/221 (51%), Gaps = 7/221 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKV---EPDKFTFASVIYGCARLGAL 57
           MP ++ V+W+++IGGFV  +R  +A   F+ ML+  +    P   + AS +  CA L  L
Sbjct: 184 MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASLDHL 241

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
                +H L+ +  +  +     +L+ MY+K G I  A  +FD +   D   ++A++SG 
Sbjct: 242 RMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGY 301

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
             +G A +A  +F KM+  NV PD+ T + L+ ACSH   ++ GR     +  R  +  +
Sbjct: 302 VQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASE 360

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
                A++D+  + G I+ +  +   M    D+V W  +++
Sbjct: 361 TSICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIA 400



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 132/327 (40%), Gaps = 60/327 (18%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFF--REMLSSKVEPDKFTFASVIYGCARLGALN 58
           MP +D+V+WN+M+ G+  +  +  A+      +M   ++ P+  T  +++   A+ GAL 
Sbjct: 71  MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALA 130

Query: 59  HAYWVHNLII----------EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS 108
               VH   I          + K+    +L  AL+DMY+KCG +  A+ VFD +   +  
Sbjct: 131 QGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV 190

Query: 109 VWNAMISGVAIHGLAADASAIFTKM-----------------------------EMFNVL 139
            W+A+I G  +      A  +F  M                             E  + L
Sbjct: 191 TWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHAL 250

Query: 140 -------PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAG 192
                   D      LL+  +  GL+++    FD M  + ++      Y A+V    + G
Sbjct: 251 LAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS-----YSALVSGYVQNG 305

Query: 193 HIEEAYGLITSM---TMEPDVVVWRALLSACRTFKRLELGEVAIVN-ISRLMGGDYVL-- 246
             EEA+ +   M    +EPD     +L+ AC     L+ G  +  + I R +  +  +  
Sbjct: 306 RAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICN 365

Query: 247 -LSNMYCYLKRWDTAENVREIMKKKGV 272
            L +MY    R D +  V  +M  + +
Sbjct: 366 ALIDMYAKCGRIDLSRQVFNMMPSRDI 392



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 14/198 (7%)

Query: 32  MLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK 91
           ML  +V P+ +TF   +  C+ L   +    +H   I   ++ +  +S AL+DMY KC  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA--IFTKMEMFNVLPDSITFLGLL 149
           +  A  +F T+   D+  WNAM++G A HG+   A A  +  +M+M  + P++ T + LL
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG----------AMVDLLGRAGHIEEAYG 199
              +  G + +G     +   R  + P                A++D+  + G +  A  
Sbjct: 121 PLLAQQGALAQGTSVHAYC-IRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARR 179

Query: 200 LITSMTMEPDVVVWRALL 217
           +  +M    + V W AL+
Sbjct: 180 VFDAMPARNE-VTWSALI 196


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/411 (44%), Positives = 259/411 (63%), Gaps = 4/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K +VSWN+MI G+ +N   +EAL  F EM S  ++PD FT  SVI   A L     A W
Sbjct: 295 NKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKW 354

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H L+I + ++ N  +  AL+DMY+KCG I  A+++FD +    V  WNAMI G   HGL
Sbjct: 355 IHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGL 414

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
              +  +F +M+   + P+ ITFL  L+ACSH GLVEEG  +F+ M+  Y I+P ++HYG
Sbjct: 415 GKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYG 474

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM-- 240
           AMVDLLGRAG + +A+  I  M ++P + V+ A+L AC+  K ++LGE A   I +L   
Sbjct: 475 AMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPD 534

Query: 241 -GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
            GG +VLL+N+Y     W     VR IM+K G++K+ G S +E+   +H F +G  SHP+
Sbjct: 535 DGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQ 594

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           ++ I   L +L+   ++ G++P T  +  DV ++ K   L  HSEKLA+A+G+L TS GT
Sbjct: 595 SKKIYSYLETLVDEIRAAGYVPDTNSI-HDVEDDVKVQLLNTHSEKLAIAFGLLNTSTGT 653

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            I I KNLR+C DCH+  K IS +  R IIVRD  RFH F+ G+CSCGDYW
Sbjct: 654 PIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHLFKDGVCSCGDYW 704



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 126/267 (47%), Gaps = 43/267 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  + VVSWNSMI G+V++   + A+  F++ML   V+P   T    ++ CA LG L   
Sbjct: 192 MDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERG 251

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            +VH L+ + K++ +  +  +LI MYSKC ++ +A ++F  ++   +  WNAMI G A +
Sbjct: 252 KFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQN 311

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSH-------------------------- 154
           G   +A   F +M+  N+ PDS T + ++ A +                           
Sbjct: 312 GCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVM 371

Query: 155 ---------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM- 204
                    CG +   RK FD M +R+ I      + AM+D  G  G  + +  L   M 
Sbjct: 372 TALVDMYAKCGAIHTARKLFDMMNARHVIT-----WNAMIDGYGTHGLGKTSVELFKEMK 426

Query: 205 --TMEPDVVVWRALLSACRTFKRLELG 229
             T++P+ + +   LSAC     +E G
Sbjct: 427 KGTIKPNDITFLCALSACSHSGLVEEG 453



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 104/217 (47%), Gaps = 2/217 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D+V WN+MI G+ +N     AL     M      PD  T  S++   A    L   
Sbjct: 91  MPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIG 150

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++    E    +S AL+DMYSKCG + +A+ +FD +    V  WN+MI G    
Sbjct: 151 MAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQS 210

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A  A  IF KM    V P ++T +G L AC+  G +E G K+   +  +  +   +  
Sbjct: 211 GDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERG-KFVHKLVDQLKLDSDVSV 269

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             +++ +  +   ++ A  +  ++     +V W A++
Sbjct: 270 MNSLISMYSKCKRVDIAADIFKNLR-NKTLVSWNAMI 305



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 120/301 (39%), Gaps = 47/301 (15%)

Query: 12  MIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKK 71
           M+ G+ +++  D AL FF  M    V P  + F  ++  C     L     +H  +I   
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 72  IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFT 131
              N      +++MY+KC +I  A  +FD +   D+  WN MISG A +G A  A  +  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 132 KMEMFNVLPDSITFLGLLTAC-----------------------------------SHCG 156
           +M      PDSIT + +L A                                    S CG
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 157 LVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVW 213
            V   R  FD M  R  +      + +M+D   ++G  E A  +   M    ++P  V  
Sbjct: 181 SVSIARVIFDGMDHRTVVS-----WNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTV 235

Query: 214 RALLSACRTFKRLELGEVAIVNISRL-MGGDYVLLS---NMYCYLKRWDTAENVREIMKK 269
              L AC     LE G+     + +L +  D  +++   +MY   KR D A ++ + ++ 
Sbjct: 236 MGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRN 295

Query: 270 K 270
           K
Sbjct: 296 K 296



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 67/144 (46%), Gaps = 6/144 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  + V++WN+MI G+  +     ++  F+EM    ++P+  TF   +  C+  G +   
Sbjct: 394 MNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEG 453

Query: 61  Y-WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             +  ++  +  IE       A++D+  + G++  A +    +  +  ++V+ AM+    
Sbjct: 454 LCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACK 513

Query: 119 IH-GLAADASAIFTKMEMFNVLPD 141
           IH  +     A F   E+F + PD
Sbjct: 514 IHKNVDLGEKAAF---EIFKLNPD 534


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/412 (43%), Positives = 256/412 (62%), Gaps = 3/412 (0%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P+K + SWN+MI G+ +N   ++A+  FREM  S+  P+  T   ++  CA+LGAL+   
Sbjct: 381 PEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGK 440

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           WVH+L+     E +  +S ALI MY+KCG I  A+ +FD + + +   WN MISG  +HG
Sbjct: 441 WVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHG 500

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              +A  IF +M    + P  +TFL +L ACSH GLV+EG + F+ M  RY  +P ++HY
Sbjct: 501 QGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHY 560

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
             MVD+LGRAGH++ A   I +M++EP   VW  LL ACR  K   L       +  L  
Sbjct: 561 ACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDP 620

Query: 242 ---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
              G +VLLSN++   + +  A  VR+  KK+ + K+ G + +E+    H F +GD+SHP
Sbjct: 621 DNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHP 680

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           + + I + L  L  + +  G+ P TEL L DV EEE+E  +  HSE+LA+A+G++ T PG
Sbjct: 681 QVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPG 740

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           TEIRI KNLR+C DCH+  K+IS++  RVI+VRD  RFH F+ G+CSCGDYW
Sbjct: 741 TEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 108/215 (50%), Gaps = 5/215 (2%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D+V++N+MI G+  N   + +L  F+E++ S       T  S++      G L   Y +H
Sbjct: 286 DIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLV---PVSGHLMLIYAIH 342

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
              ++     +  +S AL  +YSK  +I+ A+++FD      +  WNAMISG   +GL  
Sbjct: 343 GYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTE 402

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           DA ++F +M+     P+ +T   +L+AC+  G +  G+   D +RS    +  +    A+
Sbjct: 403 DAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRST-DFESSIYVSTAL 461

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           + +  + G I EA  L   MT + + V W  ++S 
Sbjct: 462 IGMYAKCGSIAEARRLFDLMTKKNE-VTWNTMISG 495



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 129/311 (41%), Gaps = 45/311 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           MP+KD + WN+MI G+ +N  + E+++ FR++++ S    D  T   ++   A L  L  
Sbjct: 180 MPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRL 239

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H+L  +     +  +    I +YSKCGKI+M   +F   ++ D+  +NAMI G   
Sbjct: 240 GMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTS 299

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL---------------------- 157
           +G    + ++F ++ +      S T + L+    H  L                      
Sbjct: 300 NGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTA 359

Query: 158 ----------VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT-- 205
                     +E  RK FD      S +  L  + AM+    + G  E+A  L   M   
Sbjct: 360 LTTVYSKLNEIESARKLFDE-----SPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKS 414

Query: 206 -MEPDVVVWRALLSACRTFKRLELGEVA--IVNISRLMGGDYVLLSNMYCYLKRWDTAEN 262
              P+ V    +LSAC     L LG+    +V  +      YV  + +  Y K    AE 
Sbjct: 415 EFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEA 474

Query: 263 VR--EIMKKKG 271
            R  ++M KK 
Sbjct: 475 RRLFDLMTKKN 485



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 4/152 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K+ V+WN+MI G+  + +  EAL  F EML+S + P   TF  V+Y C+  G +   
Sbjct: 481 MTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEG 540

Query: 61  YWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             + N +I +   E +    A ++D+  + G +Q A +  + +      SVW  ++    
Sbjct: 541 DEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACR 600

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150
           IH     A  +  K  +F + PD++ +  LL+
Sbjct: 601 IHKDTNLARTVSEK--LFELDPDNVGYHVLLS 630



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 96/227 (42%), Gaps = 6/227 (2%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           DV  +N ++ GF  N     +L  F  +  S+ ++P+  T+A  I   +          +
Sbjct: 82  DVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVI 141

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   +    +   +L + ++ MY K  +++ A++VFD +   D  +WN MISG   + + 
Sbjct: 142 HGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMY 201

Query: 124 ADASAIFTKM--EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
            ++  +F  +  E    L D+ T L +L A +    +  G +    + ++          
Sbjct: 202 VESIQVFRDLINESCTRL-DTTTLLDILPAVAELQELRLGMQ-IHSLATKTGCYSHDYVL 259

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLEL 228
              + L  + G I+    L      +PD+V + A++    +    EL
Sbjct: 260 TGFISLYSKCGKIKMGSALFREF-RKPDIVAYNAMIHGYTSNGETEL 305



 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 77/175 (44%), Gaps = 13/175 (7%)

Query: 53  RLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA 112
           R  +++H    H  II      +  L   L    S  G I  A+++F +VQR DV ++N 
Sbjct: 29  RSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNV 88

Query: 113 MISGVAIHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACS-----HCGLVEEGRKYFD 166
           ++ G +++     + ++F  + +  ++ P+S T+   ++A S       G V  G+   D
Sbjct: 89  LMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVD 148

Query: 167 HMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACR 221
              S   +   +      V +  +   +E+A  +   M  E D ++W  ++S  R
Sbjct: 149 GCDSELLLGSNI------VKMYFKFWRVEDARKVFDRMP-EKDTILWNTMISGYR 196


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/417 (45%), Positives = 267/417 (64%), Gaps = 7/417 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +KD+VSW+++I G+ +N  ++EAL  F EM ++ +  D+    SV+  CA L  +   
Sbjct: 224 MDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTG 283

Query: 61  YWVHNLIIEKKIELNFILSAALI----DMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
             +H L+I   IE    L  ALI    DMY KCG ++ A EVF+ ++   VS WNA+I G
Sbjct: 284 KMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIG 343

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
           +A++GL   +  +F++M+   V+P+ ITF+G+L AC H GLV+EGR +F  M  ++ I+P
Sbjct: 344 LAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEP 403

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---I 233
            ++HYG MVDLLGRAG + EA  LI SM M PDV  W ALL AC+     E+GE     +
Sbjct: 404 NVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKL 463

Query: 234 VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
           + +     G +VLLSN++     W+    VR +MK++GV K+ G S +E  GV+H+F AG
Sbjct: 464 IELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAG 523

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           D++HP    ++ +L  + +R K EG+ P T  V +D+ EEEKE  L+ HSEKLA+A+G+L
Sbjct: 524 DKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIAFGLL 583

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             SP T IRI KNLRIC+DCH+  K+IS+   R I+VRDR RFH F+ G CSC DYW
Sbjct: 584 TISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 640



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 111/247 (44%), Gaps = 40/247 (16%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           WN+M+  ++++   ++AL  ++ M+ + V PD +T+  V+  CA          +H+ ++
Sbjct: 97  WNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVL 156

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFD---------------------------- 100
           +   + +  +   LI+MY+ CG ++ A+++FD                            
Sbjct: 157 KVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVME 216

Query: 101 ------TVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
                  +   D+  W+A+ISG   +G+  +A  +F +M    +  D +  + +L+AC+H
Sbjct: 217 AWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAH 276

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV----DLLGRAGHIEEAYGLITSMTMEPDV 210
             +V+ G K    +  R  I+  +    A++    D+  + G +E A  +   M  E  V
Sbjct: 277 LSIVKTG-KMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGME-EKGV 334

Query: 211 VVWRALL 217
             W AL+
Sbjct: 335 SSWNALI 341



 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 37/184 (20%), Positives = 81/184 (44%), Gaps = 15/184 (8%)

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAK-----------EVFDTVQRNDV 107
           H +  HNL    +I    IL+  + D ++    ++ +            ++FD ++ ++ 
Sbjct: 35  HLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNG 94

Query: 108 SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH 167
            +WN M+        A  A  ++  M   NV PD+ T+  ++ AC+   L   G++  DH
Sbjct: 95  FMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDH 154

Query: 168 MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
           +  +      +     ++++    G++ +A  L     +  D V W ++L+     K+ +
Sbjct: 155 VL-KVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPV-LDSVSWNSILAG--YVKKGD 210

Query: 228 LGEV 231
           +G+V
Sbjct: 211 MGQV 214


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/413 (42%), Positives = 262/413 (63%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D V+WN+M+ G+VR  R  EAL  F EM  + V   + T  SV+  CA++GAL   
Sbjct: 216 MPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVSVLTACAQMGALERG 275

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH+ +  + + ++  L  AL+DMYSKCG + M+ EVF+T++  ++  W + +SG+A++
Sbjct: 276 MWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYTWTSALSGLAMN 335

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G+  +   +F +ME   + P+ +TF+ +L  CS  GLVEEGR  FD M+ ++ ++P LEH
Sbjct: 336 GMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEH 395

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG MVDL GRAG +++A   I SM +EP   VW ALL+A R    ++LG+ A+  ++ + 
Sbjct: 396 YGCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGALLNASRIHNNVDLGKHAMHKLTEIE 455

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             +   +VLLSN+Y     W     VR +MK KGV+K  G S +E+ G +H+F  G +SH
Sbjct: 456 SKNDAAHVLLSNIYAESHNWKGVSKVRNMMKSKGVKKMPGCSAIEVDGKVHEFFVGSKSH 515

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + I  +L  +  R + +G+   T+ VL D+ EEEKEG +  HSEKLALA+G++    
Sbjct: 516 PRYKDIQTMLAEMSHRLRLQGYAANTKEVLFDIEEEEKEGAISLHSEKLALAFGLITLPE 575

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T IRI KNLR+C DCH + K+IS++  R I++RDR RFH F+ G CSC DYW
Sbjct: 576 DTVIRIVKNLRVCKDCHDYTKLISKVFDREIVMRDRNRFHHFKHGACSCRDYW 628



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 12/166 (7%)

Query: 72  IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFT 131
           +  + +   A++   S  G +  A+E+FD + + D   WNAM++G    G + +A  +F 
Sbjct: 186 VSPDVVCVTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFD 245

Query: 132 KMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRA 191
           +M+   V    +T + +LTAC+  G +E G     ++ SR  ++  +    A+VD+  + 
Sbjct: 246 EMQKAGVAVSEVTLVSVLTACAQMGALERGMWVHSYVCSR-GMRVSVTLGTALVDMYSKC 304

Query: 192 GHIEEAYGLITSMTMEPDVVVWRALLSA----------CRTFKRLE 227
           G +  +  +  +M  E ++  W + LS              FKR+E
Sbjct: 305 GVVTMSMEVFETMR-ERNIYTWTSALSGLAMNGMGEECLELFKRME 349


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/413 (42%), Positives = 259/413 (62%), Gaps = 3/413 (0%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            +P  D V+W +MI G V N + + AL  +  M  SKV+PD++TFA+++  C+ L AL   
Sbjct: 1170 IPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQG 1229

Query: 61   YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              +H   ++     +  +  +L+DMY+KCG I+ A+ +F     + ++ WNAMI G+A H
Sbjct: 1230 RQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQH 1289

Query: 121  GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            G A +A   F +M+   V PD +TF+G+L+ACSH GLV E  + F  M+  Y I+P++EH
Sbjct: 1290 GNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEH 1349

Query: 181  YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
            Y  +VD L RAG I EA  +I+SM  E    ++R LL+ACR     E G+     +  L 
Sbjct: 1350 YSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALE 1409

Query: 241  GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              D   YVLLSN+Y    +W+   + R +M+K  V+K  G SW++L   +H F AGDRSH
Sbjct: 1410 PSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSH 1469

Query: 298  PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
             E   I   +  +++R + EG+LP T+  L+DV EE+KE +LY+HSEKLA+AYG++KT P
Sbjct: 1470 EETDVIYNKVEYIMKRIREEGYLPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPP 1529

Query: 358  GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             T +R+ KNLR+C DCH+ IK IS++  R +++RD  RFH F  G+CSCGDYW
Sbjct: 1530 STTLRVIKNLRVCGDCHNAIKYISKVFEREVVLRDANRFHHFRSGVCSCGDYW 1582



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 109/214 (50%), Gaps = 4/214 (1%)

Query: 5    DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
            D+ SWN+M+ G++ +  F +ALR +  M  S    ++ T A+       L  L     + 
Sbjct: 1073 DLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQ 1132

Query: 65   NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             +++++   L+  + + ++DMY KCG+++ A+ +F+ +   D   W  MISG   +G   
Sbjct: 1133 AVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEE 1192

Query: 125  DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLEHYGA 183
             A   +  M +  V PD  TF  L+ ACS    +E+GR+ + + ++   +  P +    +
Sbjct: 1193 HALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFV--MTS 1250

Query: 184  MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
            +VD+  + G+IE+A GL    T    +  W A++
Sbjct: 1251 LVDMYAKCGNIEDARGLF-KRTNTSRIASWNAMI 1283



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 108/221 (48%), Gaps = 3/221 (1%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH- 59
            M + D+VSWN+MI G   +   + ++  F ++L   + PD+FT ASV+  C+ LG   H 
Sbjct: 967  MNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHL 1026

Query: 60   AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
            A  +H   ++  + L+  +S  LID+YSK GK++ A+ +F      D++ WNAM+ G  +
Sbjct: 1027 ATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIV 1086

Query: 120  HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
             G    A  ++  M+      + IT      A      +++G++    +  +      L 
Sbjct: 1087 SGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQ-IQAVVVKRGFNLDLF 1145

Query: 180  HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
                ++D+  + G +E A  +   +   PD V W  ++S C
Sbjct: 1146 VISGVLDMYLKCGEMESARRIFNEIP-SPDDVAWTTMISGC 1185



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 77/152 (50%)

Query: 5    DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
            DV++WN  +  F++     EA+  F +M++S+V  D  TF  ++   A L  L     +H
Sbjct: 870  DVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIH 929

Query: 65   NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             +++   ++    +   LI+MY K G +  A+ VF  +   D+  WN MISG A+ GL  
Sbjct: 930  GIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEE 989

Query: 125  DASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
             +  +F  +    +LPD  T   +L ACS  G
Sbjct: 990  CSVGMFVDLLRGGLLPDQFTVASVLRACSSLG 1021



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 76/149 (51%), Gaps = 4/149 (2%)

Query: 2   PD--KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           PD  +D+V+WN+++      AR  +    FR +  S V   + T A V   C    + + 
Sbjct: 688 PDTSRDLVTWNAILSAHADKAR--DGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSA 745

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
           A  +H   ++  ++ +  ++ AL+++Y+K G+I+ A+ +FD +   DV +WN M+     
Sbjct: 746 AESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVD 805

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGL 148
            GL  +A  +F++     + PD +T   L
Sbjct: 806 TGLEYEALLLFSEFNRTGLRPDDVTLCTL 834



 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 6/159 (3%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN--DVSVWNAMISGVAIH 120
            H  I+      +  L+  LI MYSKCG +  A+++FDT      D+  WNA++S  A  
Sbjct: 648 AHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHADK 707

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
             A D   +F  +    V     T   +   C              +   +  +Q  +  
Sbjct: 708 --ARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYA-VKIGLQWDVFV 764

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            GA+V++  + G I EA  L   M +  DVV+W  ++ A
Sbjct: 765 AGALVNIYAKFGRIREARVLFDGMGLR-DVVLWNVMMKA 802


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 181/413 (43%), Positives = 253/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D VSWN+MI G+ +  +  EAL  F+ M    V+ ++ +  SV+  C  LGAL+  
Sbjct: 202 MPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQG 261

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W H  I + KI++   L  AL+DMY KCG +  A +VF  +   +V  W+  I G+A++
Sbjct: 262 KWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMN 321

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G       +F+ M+   + P+ ITF+ +L  CS  G V+EGR +FD M+  + I+P+LEH
Sbjct: 322 GYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRLEH 381

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG MVDL GRAG +EEA   I +M ++P    W ALL+ACR +K +ELGE A   +  + 
Sbjct: 382 YGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIEVE 441

Query: 241 G---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
           G   G YV LSN+Y     WD   NVR+ MK +G+ K  G S +E+ G +H+F +GD+SH
Sbjct: 442 GKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVNGEVHEFFSGDKSH 501

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    I+ + G + +R K  G++ +T  VL D+ EEEKE  L  HSEK+A+A+G+     
Sbjct: 502 PSYDVIETMWGEISKRLKLAGYVASTNSVLFDIEEEEKEDALCKHSEKMAIAFGLFSLKE 561

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KNLRIC DCH   KMIS++  R IIVRDR RFH F+ G CSC D+W
Sbjct: 562 GLPIRIVKNLRICWDCHDVSKMISKIFEREIIVRDRNRFHHFKDGECSCKDFW 614



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 112/237 (47%), Gaps = 36/237 (15%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSSK--VEPDKFTFASVIYGCARLGALNHAYWVHNLI 67
           NSMI  + ++    ++ +F+ ++L S   + PD +TF  ++  CA+  A      VH  +
Sbjct: 78  NSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQ-SACEAGPAVHGAL 136

Query: 68  IEKKIELNFILSAALIDMYS-------------------------------KCGKIQMAK 96
           I+   E +  + + LI MY+                               KCG I  A+
Sbjct: 137 IKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFAR 196

Query: 97  EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
            +FD++ + D   WNAMI+G A  G + +A  +F  M+M  V  + ++ + ++TAC+H G
Sbjct: 197 NLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLG 256

Query: 157 LVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVW 213
            +++G K+      +  IQ  +    A+VD+  + G+++ A  +   M  E +V  W
Sbjct: 257 ALDQG-KWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMN-EKNVYTW 311


>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 611

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/413 (43%), Positives = 264/413 (63%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +  V+W++MIGG+VR     +A+  FR M  S V PD+ T   V+   A LGAL   
Sbjct: 199 MPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQVSGVRPDEVTVIGVLAAAADLGALELT 258

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WV   +  + I  +  L  ALID  +KCG +  A  VF+ ++   V  W ++I  +A+ 
Sbjct: 259 RWVGRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMEERTVVSWTSVIDALAME 318

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M+   VLPD + F+G+LTACSH G+V+EGR YFD M++ Y I+P++EH
Sbjct: 319 GRGKEAVGVFEEMKAVGVLPDDVAFIGVLTACSHAGMVDEGRGYFDSMKTEYGIEPKIEH 378

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG MVD+ GRAG +E+    + +M M+P+ ++WR L++ACR   RLELGE    N+    
Sbjct: 379 YGCMVDMFGRAGMVEQGLEFVRAMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEF 438

Query: 241 G---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                +YV+LSN+Y   +RW     +R  M K+G++K  G S +EL G +H+F AGD SH
Sbjct: 439 PAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESH 498

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I +++  + +  +  G + AT  VL+D+ EE+KEG L  HSEKLA+A+ +L+T P
Sbjct: 499 PQYKEIYRMVEEMSRELRRIGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFVLLRTPP 558

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT++R+ KNLR+C DCH+ IK IS++  R I+VRDR RFHRF+ G CSC D+W
Sbjct: 559 GTQVRVVKNLRVCSDCHAAIKCISQVYNREIVVRDRSRFHRFKDGSCSCKDFW 611



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 97/198 (48%), Gaps = 5/198 (2%)

Query: 25  ALRFFREMLSSKVEPDKFTFASVIYGCARL-GALNHAYWVHNLIIEKKIELNFILSAALI 83
           A  FF  ML + V P+KFTF  ++  CA L G+ +     H   ++     +  +S  LI
Sbjct: 119 AAAFFPLMLRAAVAPNKFTFPFLLKSCAALPGSPDVGLQAHAAALKFGFAADHYVSNTLI 178

Query: 84  DMYS--KCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
            MYS    G +  A+ VF+ + R     W+AMI G    GL++DA  +F  M++  V PD
Sbjct: 179 HMYSCFGAGFLGDARNVFERMPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQVSGVRPD 238

Query: 142 SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
            +T +G+L A +  G +E  R +      R  I   +    A++D L + G ++ A  + 
Sbjct: 239 EVTVIGVLAAAADLGALELTR-WVGRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVF 297

Query: 202 TSMTMEPDVVVWRALLSA 219
             M  E  VV W +++ A
Sbjct: 298 EGME-ERTVVSWTSVIDA 314


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/412 (43%), Positives = 264/412 (64%), Gaps = 25/412 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  K VVSW +MI G +R+ R +E  + F  M    + P++ T                 
Sbjct: 255 LTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEIT----------------- 297

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                ++ ++++E++ IL+ AL+DMY+KCG I  A  +F      D+ +WNA+I+G A+H
Sbjct: 298 -----MLNKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMH 352

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  IF +ME   V P+ ITF+GLL ACSH GLV EG+K F+ M   + + PQ+EH
Sbjct: 353 GYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEH 412

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDLLGRAG ++EA+ +I SM ++P+ +VW AL++ACR  K  +LGE+A   ++ I 
Sbjct: 413 YGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIE 472

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G  VL+SN+Y    RW  A  VR+ MK  G++K  G S +E+ G +H+F  GD+SH
Sbjct: 473 PENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSH 532

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I+++L  + ++    G++P T  VL+++ EEEKE  L +HSEKLA+A+G++ T+P
Sbjct: 533 PQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAP 592

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDY 409
            T IRI KNLR+C+DCH+  K++S++  RVIIVRDR RFH F  G CSCGDY
Sbjct: 593 STPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDY 644



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/264 (20%), Positives = 105/264 (39%), Gaps = 56/264 (21%)

Query: 8   SWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLI 67
            WN +I  + +  +   AL  + ++     E D F   SV+  C ++        +H  +
Sbjct: 126 QWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFV 185

Query: 68  IEKKIELNFIL-----------------------------------SAALIDMYSKCGKI 92
           ++K ++ +  +                                   + AL+DMY+KCG +
Sbjct: 186 LKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHL 245

Query: 93  QMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFL------ 146
            +A+++F+ + +  V  W AMI+G        + + +F +M+  N+ P+ IT L      
Sbjct: 246 GLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLNKERVE 305

Query: 147 -------GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199
                   L+   + CG +    + F    SR      +  + A++      G+ EEA  
Sbjct: 306 VDCILNTALVDMYAKCGDINAAGRLFIEAISR-----DICMWNAIITGFAMHGYGEEALD 360

Query: 200 LITSMT---MEPDVVVWRALLSAC 220
           +   M    ++P+ + +  LL AC
Sbjct: 361 IFAEMERQGVKPNDITFIGLLHAC 384


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/409 (44%), Positives = 248/409 (60%), Gaps = 3/409 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +VVSW SMI    +N R  EAL  FREM  + V+P+  T   ++  C  + AL H    H
Sbjct: 350 NVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAH 409

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
              + + I  +  + +ALIDMY+KCG+IQ ++  FD +   ++  WNA+I+G A+HG A 
Sbjct: 410 CFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAK 469

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           +A  IF  M+     PD I+F  +L+ACS  GL EEG  YF+ M S+Y I+ ++EHY  M
Sbjct: 470 EAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACM 529

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---MG 241
           V LL RAG +E+AY +I  M + PD  VW ALLS+CR    + LGEVA   +  L     
Sbjct: 530 VTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNP 589

Query: 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
           G+Y+LLSN+Y     W+    VR++MK KG+RK+ G SW+E+   +H   AGD+SHP+  
Sbjct: 590 GNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMT 649

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
            I + L  L    K  G+ P    VL DV E++KE  L  HSEKLA+ +G+L T PG  +
Sbjct: 650 QIIEKLDKLSMEMKKLGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPPGYPL 709

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           ++ KNLRIC DCH  IK IS   RR I VRD  RFH F+ G CSCGDYW
Sbjct: 710 QVIKNLRICGDCHVVIKFISSFERREIFVRDTNRFHHFKEGACSCGDYW 758



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 89/171 (52%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+ +V S++++I  F +  +F  AL  F +ML+  + PD     S +  CA L AL  A
Sbjct: 74  VPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPA 133

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH +      + +  + ++L+ MY KC +I+ A  VFD +   DV  W+A+++  A  
Sbjct: 134 RQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQ 193

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR 171
           G   +A  +F++M    V P+ I++ G++   +H GL  E    F  M  R
Sbjct: 194 GCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLR 244



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 109/251 (43%), Gaps = 39/251 (15%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +++SWN MI GF  +  + EA+  F +M     EPD  T +SV+     L  L     +H
Sbjct: 214 NLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIH 273

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS---------------- 108
             +I++ +  +  +S+ALIDMY KC       +VFD +   DV                 
Sbjct: 274 GYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVE 333

Query: 109 -------------------VWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
                               W +MI+  + +G   +A  +F +M++  V P+S+T   LL
Sbjct: 334 SSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLL 393

Query: 150 TACSHCGLVEEGRKYFDHMRS-RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
            AC +   +  G+    H  S R  I   +    A++D+  + G I+ +      +  + 
Sbjct: 394 PACGNIAALMHGKAA--HCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTK- 450

Query: 209 DVVVWRALLSA 219
           ++V W A+++ 
Sbjct: 451 NLVCWNAVIAG 461



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH- 59
           +P K++V WN++I G+  + +  EA+  F  M  S  +PD  +F  V+  C++ G     
Sbjct: 447 IPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEG 506

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN-DVSVWNAMISGVA 118
           +Y+ +++  +  IE      A ++ + S+ GK++ A  +   +  N D  VW A++S   
Sbjct: 507 SYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCR 566

Query: 119 IH 120
           +H
Sbjct: 567 VH 568


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/410 (45%), Positives = 256/410 (62%), Gaps = 4/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K VV+WN+MI G+ +N   +EAL  F EM S  ++PD FT  SVI   A L     A W+
Sbjct: 408 KTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWI 467

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H L I   ++ N  +  ALID ++KCG IQ A+++FD +Q   V  WNAMI G   +G  
Sbjct: 468 HGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHG 527

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F +M+  +V P+ ITFL ++ ACSH GLVEEG  YF+ M+  Y ++P ++HYGA
Sbjct: 528 REALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGA 587

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
           MVDLLGRAG +++A+  I  M ++P + V  A+L ACR  K +ELGE     + ++    
Sbjct: 588 MVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDD 647

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
           GG +VLL+NMY     WD    VR  M+KKG++K+ G S +EL   +H F +G  +HP++
Sbjct: 648 GGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQS 707

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + I   L +L    K+ G++P T  +  DV E+ KE  L  HSE+LA+A+G+L T  GT 
Sbjct: 708 KRIYAYLETLGDEMKAAGYVPDTNSI-HDVEEDVKEQLLSSHSERLAIAFGLLNTRHGTA 766

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           I I KNLR+C DCH   K IS +  R IIVRD  RFH F+ G+CSCGDYW
Sbjct: 767 IHIRKNLRVCGDCHEATKYISLVTGREIIVRDLRRFHHFKNGICSCGDYW 816



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 131/267 (49%), Gaps = 43/267 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  ++VVSWN+MI G+ +N   +EA   F +ML   VEP   +    ++ CA LG L   
Sbjct: 304 MSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERG 363

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            +VH L+ EKKI  +  +  +LI MYSKC ++ +A  VF  ++   V  WNAMI G A +
Sbjct: 364 RYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQN 423

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTA----------------------------C 152
           G   +A  +F +M+  ++ PDS T + ++TA                            C
Sbjct: 424 GCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVC 483

Query: 153 S-------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM- 204
           +        CG ++  RK FD M+ R+ I      + AM+D  G  GH  EA  L   M 
Sbjct: 484 TALIDTHAKCGAIQTARKLFDLMQERHVIT-----WNAMIDGYGTNGHGREALDLFNEMQ 538

Query: 205 --TMEPDVVVWRALLSACRTFKRLELG 229
             +++P+ + + ++++AC     +E G
Sbjct: 539 NGSVKPNEITFLSVIAACSHSGLVEEG 565



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 109/217 (50%), Gaps = 2/217 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+VSWN+++ G+ +N     A++   +M  +  +PD  T  SV+   A L AL   
Sbjct: 203 MPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIG 262

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H        E    ++ A++D Y KCG ++ A+ VF  +   +V  WN MI G A +
Sbjct: 263 RSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQN 322

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G + +A A F KM    V P +++ +G L AC++ G +E GR Y   +     I   +  
Sbjct: 323 GESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGR-YVHRLLDEKKIGFDVSV 381

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             +++ +  +   ++ A  +  ++  +  VV W A++
Sbjct: 382 MNSLISMYSKCKRVDIAASVFGNLKHKT-VVTWNAMI 417



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 131/312 (41%), Gaps = 55/312 (17%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           V +++M+ G+ +N+   +A+RF+  M   +V P  + F  ++        L     +H +
Sbjct: 108 VLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGM 167

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           +I    + N     A++++Y+KC +I+ A ++F+ + + D+  WN +++G A +G A  A
Sbjct: 168 VITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRA 227

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACS--------------------------------- 153
             +  +M+     PDSIT + +L A +                                 
Sbjct: 228 VQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDT 287

Query: 154 --HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT---MEP 208
              CG V   R  F  M SR  +      +  M+D   + G  EEA+     M    +EP
Sbjct: 288 YFKCGSVRSARLVFKGMSSRNVVS-----WNTMIDGYAQNGESEEAFATFLKMLDEGVEP 342

Query: 209 DVVVWRALLSACRTFKRLELGEVAIVNISRLM-----GGDYVLLS---NMYCYLKRWDTA 260
             V     L AC     LE G      + RL+     G D  +++   +MY   KR D A
Sbjct: 343 TNVSMMGALHACANLGDLERGRY----VHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIA 398

Query: 261 ENVREIMKKKGV 272
            +V   +K K V
Sbjct: 399 ASVFGNLKHKTV 410



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 4/143 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++ V++WN+MI G+  N    EAL  F EM +  V+P++ TF SVI  C+  G +   
Sbjct: 506 MQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEG 565

Query: 61  -YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMA-KEVFDTVQRNDVSVWNAMISGVA 118
            Y+  ++     +E       A++D+  + G++  A K + D   +  ++V  AM+    
Sbjct: 566 MYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACR 625

Query: 119 IHGLAADASAIFTKMEMFNVLPD 141
           IH          T  E+F++ PD
Sbjct: 626 IHKNVELGEK--TADELFDLDPD 646



 Score = 45.4 bits (106), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 2/164 (1%)

Query: 56  ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
           +L   + +  LII+       +    LI ++ K   I  A  VF+ V+     +++ M+ 
Sbjct: 56  SLKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLK 115

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           G A +    DA   + +M    V+P    F  LL        +  GR+    M      Q
Sbjct: 116 GYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGRE-IHGMVITNGFQ 174

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             L    A+V+L  +   IE+AY +   M  + D+V W  +++ 
Sbjct: 175 SNLFAMTAVVNLYAKCRQIEDAYKMFERMP-QRDLVSWNTVVAG 217


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/413 (43%), Positives = 270/413 (65%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +PD++ V+WN++I G+V+    + A+  F  ML   ++P + T++SV+   A L AL   
Sbjct: 399 LPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPG 458

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+L I+     + +++ +LIDMY+KCG+I  A+  FD + + D   WNAMI G ++H
Sbjct: 459 LQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMH 518

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G++ +A  +F  M+  +  P+ +TF+G+L+ACS+ GL+ +G+ +F+ M   Y I+P +EH
Sbjct: 519 GMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEH 578

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MV LLGR G  +EA  LI  +  +P V+VWRALL AC   K+++LG V   ++  + 
Sbjct: 579 YTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEME 638

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D   +VLLSNMY    RWD    VR+ M+KK VRK  G SW+E  GV+H F  GD SH
Sbjct: 639 PHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHYFSVGDTSH 698

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I  +L  L ++T+  G++P    VL+DV ++EKE +L+ HSE+LALAYG+++T  
Sbjct: 699 PDIKLICAMLEWLNKKTRDAGYVPDCNAVLLDVQDDEKERHLWVHSERLALAYGLIRTPL 758

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IRI KNLRIC DCH+ +K+IS++++R I++RD  RFH F  G+CSCGDYW
Sbjct: 759 SCSIRIIKNLRICIDCHTVMKLISKVVQREIVIRDINRFHHFRHGVCSCGDYW 811



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 117/219 (53%), Gaps = 6/219 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP  D++ W+ MI  + ++ R  EAL  F  M  + V P+ FTFASV+  CA   +L+  
Sbjct: 298 MPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLG 357

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAI 119
             +H+ +++  +  N  +S A++D+Y+KCG+I+ + ++F+ +  RNDV+ WN +I G   
Sbjct: 358 KQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVT-WNTIIVGYVQ 416

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD-HMRSRYSIQPQL 178
            G    A  +FT M   ++ P  +T+  +L A +    +E G +     +++ Y+    +
Sbjct: 417 LGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVV 476

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
               +++D+  + G I +A      M  + D V W A++
Sbjct: 477 A--NSLIDMYAKCGRINDARLTFDKMN-KRDEVSWNAMI 512



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 135/309 (43%), Gaps = 47/309 (15%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD+VSW  M+  +  N  ++E+L+ F +M     +P+ FT +  +  C  L A N    V
Sbjct: 200 KDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSV 259

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   ++   + +  +  AL+++Y+K G+I  A+ +F+ + + D+  W+ MI+  A    +
Sbjct: 260 HGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRS 319

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTAC------------------------------- 152
            +A  +F +M   +V+P++ TF  +L AC                               
Sbjct: 320 KEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAI 379

Query: 153 ----SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM---T 205
               + CG +E   K F+ +  R  +      +  ++    + G  E A  L T M    
Sbjct: 380 MDVYAKCGEIENSMKLFEELPDRNDVT-----WNTIIVGYVQLGDGERAMNLFTHMLEHD 434

Query: 206 MEPDVVVWRALLSACRTFKRLELG-EVAIVNISRLMGGDYVL---LSNMYCYLKRWDTAE 261
           M+P  V + ++L A  +   LE G ++  + I  +   D V+   L +MY    R + A 
Sbjct: 435 MQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDAR 494

Query: 262 NVREIMKKK 270
              + M K+
Sbjct: 495 LTFDKMNKR 503



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 107/224 (47%), Gaps = 14/224 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP  + +S+ ++  G+ R+ +F +AL F   +     E + F F +++     +   +  
Sbjct: 96  MPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLC 155

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           + +H  + +     +  +  ALID YS  G + +A+ VFD +   D+  W  M++  A +
Sbjct: 156 WTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAEN 215

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY--SIQPQL 178
               ++  +F +M +    P++ T  G L +C        G + F+  +S +  +++   
Sbjct: 216 CFYEESLQLFNQMRIMGYKPNNFTISGALKSCL-------GLEAFNVGKSVHGCALKGCY 268

Query: 179 EH---YG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
           +H    G A+++L  ++G I +A  L   M  + D++ W  +++
Sbjct: 269 DHDLFVGIALLELYAKSGEIIDAQRLFEEMP-KTDLIPWSLMIA 311


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/417 (45%), Positives = 265/417 (63%), Gaps = 11/417 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD VS+++++ G+V+N R +EA   F++M +  VEPD  T  S+I  C+ L AL H 
Sbjct: 401 MAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHG 460

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H  +I + +     +  ALIDMY+KCG+I ++++VF+ +   D+  WN MI+G  IH
Sbjct: 461 RCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIH 520

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A+A+F +M      PD +TF+ LL+ACSH GLV EG+ +F  M   Y + P++EH
Sbjct: 521 GLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEH 580

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MVDLL R G ++EAY  I SM +  DV VW ALL ACR +K ++LG+     +SR++
Sbjct: 581 YICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGK----KVSRMI 636

Query: 241 -------GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
                   G++VLLSN+Y    R+D A  VR I K +G +KS G SW+E+ G +H F  G
Sbjct: 637 QELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGG 696

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           D+SHP++  I + L +++   K  G+ P T  VL D+ EEEKE  L  HSEKLA+AYGIL
Sbjct: 697 DQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGIL 756

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             S    I ++KNLR+C DCH+ IK IS + RR IIVRD  RFH F+ G CSCGD+W
Sbjct: 757 SLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 113/221 (51%), Gaps = 7/221 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKV---EPDKFTFASVIYGCARLGAL 57
           MP ++ V+W+++IGGFV  +R  +A   F+ ML+  +    P   + AS +  CA L  L
Sbjct: 299 MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASLDHL 356

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
                +H L+ +  +  +     +L+ MY+K G I  A  +FD +   D   ++A++SG 
Sbjct: 357 RMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGY 416

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
             +G A +A  +F KM+  NV PD+ T + L+ ACSH   ++ GR     +  R  +  +
Sbjct: 417 VQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASE 475

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
                A++D+  + G I+ +  +   M    D+V W  +++
Sbjct: 476 TSICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIA 515



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 4/165 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEA--LRFFREMLSSKVEPDKFTFASVIYGCARLGALN 58
           +P  DV ++N +I  +  ++    A  L  +R ML  +V P+ +TF   +  C+ L   +
Sbjct: 83  IPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKACSALADHH 142

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H   I   ++ +  +S AL+DMY KC  +  A  +F T+   D+  WNAM++G A
Sbjct: 143 CGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYA 202

Query: 119 IHGLAADASA--IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG 161
            HG+   A A  +  +M+M  + P++ T + LL   +  G + +G
Sbjct: 203 HHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQG 247



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 132/327 (40%), Gaps = 60/327 (18%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFF--REMLSSKVEPDKFTFASVIYGCARLGALN 58
           MP +D+V+WN+M+ G+  +  +  A+      +M   ++ P+  T  +++   A+ GAL 
Sbjct: 186 MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALA 245

Query: 59  HAYWVHNLII----------EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS 108
               VH   I          + K+    +L  AL+DMY+KCG +  A+ VFD +   +  
Sbjct: 246 QGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV 305

Query: 109 VWNAMISGVAIHGLAADASAIFTKM-----------------------------EMFNVL 139
            W+A+I G  +      A  +F  M                             E  + L
Sbjct: 306 TWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHAL 365

Query: 140 -------PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAG 192
                   D      LL+  +  GL+++    FD M  + ++      Y A+V    + G
Sbjct: 366 LAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS-----YSALVSGYVQNG 420

Query: 193 HIEEAYGLITSM---TMEPDVVVWRALLSACRTFKRLELGEVAIVN-ISRLMGGDYVL-- 246
             EEA+ +   M    +EPD     +L+ AC     L+ G  +  + I R +  +  +  
Sbjct: 421 RAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICN 480

Query: 247 -LSNMYCYLKRWDTAENVREIMKKKGV 272
            L +MY    R D +  V  +M  + +
Sbjct: 481 ALIDMYAKCGRIDLSRQVFNMMPSRDI 507


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/413 (43%), Positives = 257/413 (62%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+VSWN++I GFV++ +   A  +F+ M  S ++PDK TF  ++  CA   AL   
Sbjct: 575 MPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEG 634

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H LI E   + + ++   LI MY+KCG I+ A +VF  + + +V  W +MI+G A H
Sbjct: 635 RRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQH 694

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M+   V PD ITF+G L+AC+H GL+EEG  +F  M+  ++I+P++EH
Sbjct: 695 GRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMK-EFNIEPRMEH 753

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG MVDL GRAG + EA   I  M +EPD  VW ALL AC+    +EL E A      L 
Sbjct: 754 YGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELD 813

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D   +V+LSN+Y     W     +R++M  +GV K  G+SW+E+ G +H F + D++H
Sbjct: 814 PNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTH 873

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I   L  L    +  G++P T  VL DV + EKE  L++HSE+LA+ YG+LKT P
Sbjct: 874 PQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTPP 933

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T I ISKNLR+C DCH+  K IS++ +R II RD  RFH F+ G+CSCGD+W
Sbjct: 934 LTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 137/263 (52%), Gaps = 33/263 (12%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +KDV SWN ++GG+V++  ++EA +   +M+   V+PDK TF S++  CA    ++  
Sbjct: 171 MREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKG 230

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             ++NLI++   + +  +  ALI+M+ KCG I  A +VFD +   D+  W +MI+G+A H
Sbjct: 231 RELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARH 290

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR----------- 169
           G    A  +F +ME   V PD + F+ LL AC+H   +E+G+K    M+           
Sbjct: 291 GRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVG 350

Query: 170 ----SRY----SIQPQLE-----------HYGAMVDLLGRAGHIEEAYGLITSMT---ME 207
               S Y    S++  LE            + AM+    + G I+EA+     M    +E
Sbjct: 351 TAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIE 410

Query: 208 PDVVVWRALLSACRTFKRLELGE 230
           P+ V + ++L AC +   L+ G+
Sbjct: 411 PNRVTFMSILGACSSPSALKRGQ 433



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 121/220 (55%), Gaps = 4/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P +D+V+W SMI G  R+ RF +A   F+ M    V+PDK  F S++  C    AL   
Sbjct: 272 LPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQG 331

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  + E   +    +  A++ MY+KCG ++ A EVFD V+  +V  W AMI+G A H
Sbjct: 332 KKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQH 391

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
           G   +A   F KM    + P+ +TF+ +L ACS    ++ G++  DH + + Y    ++ 
Sbjct: 392 GRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR 451

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A++ +  + G +++A+ +   ++ + +VV W A+++A
Sbjct: 452 --TALLSMYAKCGSLKDAHRVFEKISKQ-NVVAWNAMITA 488



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 111/216 (51%), Gaps = 2/216 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++VVSW +MI GF ++ R DEA  FF +M+ S +EP++ TF S++  C+   AL     +
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQI 435

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
            + IIE     +  +  AL+ MY+KCG ++ A  VF+ + + +V  WNAMI+    H   
Sbjct: 436 QDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQY 495

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A A F  +    + P+S TF  +L  C     +E G K+   +  +  ++  L    A
Sbjct: 496 DNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELG-KWVHFLIMKAGLESDLHVSNA 554

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +V +    G +  A  L   M  + D+V W  +++ 
Sbjct: 555 LVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAG 589



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 117/216 (54%), Gaps = 2/216 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++VV+WN+MI  +V++ ++D AL  F+ +L   ++P+  TF S++  C    +L    WV
Sbjct: 477 QNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWV 536

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H LI++  +E +  +S AL+ M+  CG +  AK +F+ + + D+  WN +I+G   HG  
Sbjct: 537 HFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKN 596

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A   F  M+   + PD ITF GLL AC+    + EGR+    + +  +    +     
Sbjct: 597 QVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRR-LHALITEAAFDCDVLVGTG 655

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++ +  + G IE+A+ +   +  + +V  W ++++ 
Sbjct: 656 LISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSMITG 690



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 121/265 (45%), Gaps = 43/265 (16%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD    N+++    +  +F+EA++    + SS ++  + T+++++  C +   L     +
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           +N I +  ++ +  +   LI+MY+KCG    AK++FD ++  DV  WN ++ G   HGL 
Sbjct: 133 YNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACS------------------------------ 153
            +A  +  +M   +V PD  TF+ +L AC+                              
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTAL 252

Query: 154 -----HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME- 207
                 CG + +  K FD++ +R      L  + +M+  L R G  ++A  L   M  E 
Sbjct: 253 INMHIKCGDIGDATKVFDNLPTR-----DLVTWTSMITGLARHGRFKQACNLFQRMEEEG 307

Query: 208 --PDVVVWRALLSACRTFKRLELGE 230
             PD V + +LL AC   + LE G+
Sbjct: 308 VQPDKVAFVSLLRACNHPEALEQGK 332


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/413 (43%), Positives = 260/413 (62%), Gaps = 3/413 (0%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            M  +D+V++N+MIGG+  +    EAL+ F  +    ++PDK T+ +++  CA  G+L  A
Sbjct: 608  MTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWA 667

Query: 61   YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              +H+L+++     +  L  AL+  Y+KCG    A  VFD + + +V  WNA+I G A H
Sbjct: 668  KEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQH 727

Query: 121  GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            G   D   +F +M+M  + PD +TF+ LL+ACSH GL+EEGR+YF  M   + I P +EH
Sbjct: 728  GRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEH 787

Query: 181  YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
            YG MVDLLGRAG ++E   LI +M  + +  +W ALL ACR    + + E A  +  +L 
Sbjct: 788  YGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLD 847

Query: 241  GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              +   YV LS+MY     WD+A  +R++M+++GV K  G+SW+E+   +H F A DRSH
Sbjct: 848  PDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDRSH 907

Query: 298  PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            PE++ I   L  L    K EG++P T  V+ DV E EKE  + HHSE+LA+AYG++ T P
Sbjct: 908  PESEKIYAELDKLTHAMKMEGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTLP 967

Query: 358  GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            GT IRI KNLR+C DCH+  K I++++ R I+ RD  RFH F+ G+CSCGDYW
Sbjct: 968  GTPIRIFKNLRVCPDCHTATKFITKIVDREIVARDVNRFHHFKDGVCSCGDYW 1020



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 134/279 (48%), Gaps = 43/279 (15%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD++SW +MIGG  ++    EAL  F++M  + ++P++ T+ S++  C+   AL+  
Sbjct: 507 MVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWG 566

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +IE  +  +  ++  L++MYS CG ++ A++VFD + + D+  +NAMI G A H
Sbjct: 567 RRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAH 626

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSH-------------------------- 154
            L  +A  +F +++   + PD +T++ +L AC++                          
Sbjct: 627 NLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLG 686

Query: 155 ---------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
                    CG   +    FD M  R  I      + A++    + G  ++   L   M 
Sbjct: 687 NALVSTYAKCGSFSDALLVFDKMMKRNVIS-----WNAIIGGCAQHGRGQDVLQLFERMK 741

Query: 206 ME---PDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
           ME   PD+V + +LLSAC     LE G     ++SR  G
Sbjct: 742 MEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFG 780



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 124/265 (46%), Gaps = 47/265 (17%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++D+++WN+MIGG      ++EA   + +M    + P+K T+  ++  C    AL+    
Sbjct: 408 NRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGRE 467

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+ +++     +  +  ALI MY++CG I+ A+ +F+ + R D+  W AMI G+A  GL
Sbjct: 468 IHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGL 527

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSH---------------------------- 154
            A+A A+F  M+   + P+ +T+  +L ACS                             
Sbjct: 528 GAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANT 587

Query: 155 -------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI--EEAYGLITSMT 205
                  CG V++ R+ FD M  R      +  Y AM+   G A H   +EA  L   + 
Sbjct: 588 LVNMYSMCGSVKDARQVFDRMTQR-----DIVAYNAMIG--GYAAHNLGKEALKLFDRLQ 640

Query: 206 ME---PDVVVWRALLSACRTFKRLE 227
            E   PD V +  +L+AC     LE
Sbjct: 641 EEGLKPDKVTYINMLNACANSGSLE 665



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 124/267 (46%), Gaps = 43/267 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K VVSW  +IGG+      + A   F++M    V P++ T+ +V+   +   AL   
Sbjct: 305 METKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWG 364

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ I+    E +  +  AL+ MY+KCG  +  ++VF+ +   D+  WN MI G+A  
Sbjct: 365 KTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEG 424

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTAC---------------------------- 152
           G   +AS I+ +M+   ++P+ IT++ LL AC                            
Sbjct: 425 GNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQ 484

Query: 153 -------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
                  + CG +++ R  F+ M     ++  +  + AM+  L ++G   EA  +   M 
Sbjct: 485 NALISMYARCGSIKDARLLFNKM-----VRKDIISWTAMIGGLAKSGLGAEALAVFQDMQ 539

Query: 206 ---MEPDVVVWRALLSACRTFKRLELG 229
              ++P+ V + ++L+AC +   L+ G
Sbjct: 540 QAGLKPNRVTYTSILNACSSPAALDWG 566



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 117/265 (44%), Gaps = 43/265 (16%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++ V SWN+M+ G+V+    +EAL+  REM    +   + T   ++  C    AL     
Sbjct: 206 ERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGRE 265

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H   ++ ++  +  ++  +++MY+KCG I  A+EVFD ++   V  W  +I G A  G 
Sbjct: 266 IHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGH 325

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACS----------------------------- 153
           +  A  IF KM+   V+P+ IT++ +L A S                             
Sbjct: 326 SEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTA 385

Query: 154 ------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME 207
                  CG  ++ R+ F+ + +R      L  +  M+  L   G+ EEA  +   M  E
Sbjct: 386 LVKMYAKCGSYKDCRQVFEKLVNR-----DLIAWNTMIGGLAEGGNWEEASEIYHQMQRE 440

Query: 208 ---PDVVVWRALLSACRTFKRLELG 229
              P+ + +  LL+AC     L  G
Sbjct: 441 GMMPNKITYVILLNACVNPTALHWG 465



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 92/198 (46%), Gaps = 6/198 (3%)

Query: 23  DEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAAL 82
           D A+   + +       +   +  ++  C  +  L     VH  II+    L+     AL
Sbjct: 123 DRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNAL 182

Query: 83  IDMYSKCGKIQMAKEVFDTVQRNDVSV--WNAMISGVAIHGLAADASAIFTKMEMFNVLP 140
           I+MY +CG I+ A++V++ +   + +V  WNAM+ G   +G   +A  +  +M+   +  
Sbjct: 183 INMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLAL 242

Query: 141 DSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199
              T + LL++C     +E GR+ + + M++R      + +   ++++  + G I EA  
Sbjct: 243 GRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVAN--CILNMYAKCGSIHEARE 300

Query: 200 LITSMTMEPDVVVWRALL 217
           +   M  +  VV W  ++
Sbjct: 301 VFDKMETKS-VVSWTIII 317


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/413 (43%), Positives = 257/413 (62%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+VSWN++I GFV++ +   A  +F+ M  S ++PDK TF  ++  CA   AL   
Sbjct: 575 MPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEG 634

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H LI E   + + ++   LI MY+KCG I+ A +VF  + + +V  W +MI+G A H
Sbjct: 635 RRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQH 694

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M+   V PD ITF+G L+AC+H GL+EEG  +F  M+  ++I+P++EH
Sbjct: 695 GRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMK-EFNIEPRMEH 753

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG MVDL GRAG + EA   I  M +EPD  VW ALL AC+    +EL E A      L 
Sbjct: 754 YGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELD 813

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D   +V+LSN+Y     W     +R++M  +GV K  G+SW+E+ G +H F + D++H
Sbjct: 814 PNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTH 873

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I   L  L    +  G++P T  VL DV + EKE  L++HSE+LA+ YG+LKT P
Sbjct: 874 PQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTPP 933

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T I ISKNLR+C DCH+  K IS++ +R II RD  RFH F+ G+CSCGD+W
Sbjct: 934 LTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 137/263 (52%), Gaps = 33/263 (12%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +KDV SWN ++GG+V++  ++EA +   +M+   V+PDK TF S++  CA    ++  
Sbjct: 171 MREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKG 230

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             ++NLI++   + +  +  ALI+M+ KCG I  A +VFD +   D+  W +MI+G+A H
Sbjct: 231 RELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARH 290

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR----------- 169
           G    A  +F +ME   V PD + F+ LL AC+H   +E+G+K    M+           
Sbjct: 291 GRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVG 350

Query: 170 ----SRY----SIQPQLE-----------HYGAMVDLLGRAGHIEEAYGLITSMT---ME 207
               S Y    S++  LE            + AM+    + G I+EA+     M    +E
Sbjct: 351 TAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIE 410

Query: 208 PDVVVWRALLSACRTFKRLELGE 230
           P+ V + ++L AC +   L+ G+
Sbjct: 411 PNRVTFMSILGACSSPSALKRGQ 433



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 121/220 (55%), Gaps = 4/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P +D+V+W SMI G  R+ RF +A   F+ M    V+PDK  F S++  C    AL   
Sbjct: 272 LPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQG 331

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  + E   +    +  A++ MY+KCG ++ A EVFD V+  +V  W AMI+G A H
Sbjct: 332 KKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQH 391

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
           G   +A   F KM    + P+ +TF+ +L ACS    ++ G++  DH + + Y    ++ 
Sbjct: 392 GRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR 451

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A++ +  + G +++A+ +   ++ + +VV W A+++A
Sbjct: 452 --TALLSMYAKCGSLKDAHRVFEKISKQ-NVVAWNAMITA 488



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 111/216 (51%), Gaps = 2/216 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++VVSW +MI GF ++ R DEA  FF +M+ S +EP++ TF S++  C+   AL     +
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQI 435

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
            + IIE     +  +  AL+ MY+KCG ++ A  VF+ + + +V  WNAMI+    H   
Sbjct: 436 QDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQY 495

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A A F  +    + P+S TF  +L  C     +E G K+   +  +  ++  L    A
Sbjct: 496 DNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELG-KWVHFLIMKAGLESDLHVSNA 554

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +V +    G +  A  L   M  + D+V W  +++ 
Sbjct: 555 LVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAG 589



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 117/216 (54%), Gaps = 2/216 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++VV+WN+MI  +V++ ++D AL  F+ +L   ++P+  TF S++  C    +L    WV
Sbjct: 477 QNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWV 536

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H LI++  +E +  +S AL+ M+  CG +  AK +F+ + + D+  WN +I+G   HG  
Sbjct: 537 HFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKN 596

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A   F  M+   + PD ITF GLL AC+    + EGR+    + +  +    +     
Sbjct: 597 QVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRR-LHALITEAAFDCDVLVGTG 655

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++ +  + G IE+A+ +   +  + +V  W ++++ 
Sbjct: 656 LISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSMIAG 690



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 121/265 (45%), Gaps = 43/265 (16%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD    N+++    +  +F+EA++    + SS ++  + T+++++  C +   L     +
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           +N I +  ++ +  +   LI+MY+KCG    AK++FD ++  DV  WN ++ G   HGL 
Sbjct: 133 YNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACS------------------------------ 153
            +A  +  +M   +V PD  TF+ +L AC+                              
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTAL 252

Query: 154 -----HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME- 207
                 CG + +  K FD++ +R      L  + +M+  L R G  ++A  L   M  E 
Sbjct: 253 INMHIKCGDIGDATKVFDNLPTR-----DLVTWTSMITGLARHGRFKQACNLFQRMEEEG 307

Query: 208 --PDVVVWRALLSACRTFKRLELGE 230
             PD V + +LL AC   + LE G+
Sbjct: 308 VQPDKVAFVSLLRACNHPEALEQGK 332


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/413 (42%), Positives = 258/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP  D V+W +MIGG+ R  +   A+  FR+M  + V PD  T  SV+  C  LGAL   
Sbjct: 171 MPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELG 230

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+ + I ++++     LS AL+DM++KCG +  A  +F  + +  +  W ++I G+A+H
Sbjct: 231 KWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMH 290

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A ++F +M+   ++P+ I F+GLL+ACSH GLVE GR+YF  M  ++ I P++EH
Sbjct: 291 GRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEH 350

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR-- 238
           YG MVDLL RAG + EA   +  M +EP+ ++WR L+SACR    L+LGE     + R  
Sbjct: 351 YGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNE 410

Query: 239 -LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
            +   +YVLLSN+Y  +  W+    +R  M KKG++K  G + +EL   IH+F  GDRSH
Sbjct: 411 PMHESNYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEIHEFIVGDRSH 470

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            +   I K++  + +  K  G+ P T  V +D+ EE+KE  L  HSEKLA+A+ +L T P
Sbjct: 471 NQYNEIIKMVNEMGREMKRAGYAPTTTEVFLDIDEEDKEDALSRHSEKLAIAFALLNTPP 530

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G+ IRI+KNLR+C DCHS  K IS++  R I++RDR RFH F  G CSCGD+W
Sbjct: 531 GSPIRITKNLRVCGDCHSASKFISKIYNREIVMRDRSRFHHFRDGQCSCGDFW 583



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 106/194 (54%), Gaps = 3/194 (1%)

Query: 25  ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84
           A+ ++  ML   + P+K+ F  V+  CA L  LN    VH  +++   + +  +   ++ 
Sbjct: 93  AIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVH 152

Query: 85  MYSKC-GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSI 143
           MY  C G ++ A+++FD + + D   W AMI G A  G +A A  +F KM++  V PD +
Sbjct: 153 MYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDV 212

Query: 144 TFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
           T + +L+AC+  G +E G K+ +    +  +   +E   A+VD+  + G +++A GL  +
Sbjct: 213 TMVSVLSACTDLGALELG-KWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRN 271

Query: 204 MTMEPDVVVWRALL 217
           M+ +  +V W +++
Sbjct: 272 MS-KRTIVSWTSVI 284


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/411 (45%), Positives = 248/411 (60%), Gaps = 4/411 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +DV+SWNSMI G  ++  ++ A + F+EM + ++EPD  TFASV+ GC    AL     +
Sbjct: 495 RDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQI 554

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  I E  ++L+  L  ALI+MY +CG +Q A+ VF ++Q  DV  W AMI G A  G  
Sbjct: 555 HGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGED 614

Query: 124 ADASAIFTKMEMFNV-LPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             A  +F +M+      PD  TF  +L+AC+H GLV EG + F  M S Y + P +EHYG
Sbjct: 615 MKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYG 674

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            +V LLGRA   +EA  LI  M   PD  VW  LL ACR    + L E A  N  +L   
Sbjct: 675 CLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNAR 734

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           +   Y+LLSN+Y    RWD    +R +M+ +G+RK  G+SW+E+  +IH+F A DRSHPE
Sbjct: 735 NPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPE 794

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
              I   L  L    +  G+ P T+ VL D+ +  +E +L  HSE+LA+AYG++KT PGT
Sbjct: 795 TAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGT 854

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI KNLRIC DCH+  K IS+L+ R II RD  RFH F+ G CSC DYW
Sbjct: 855 PIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 905



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 122/220 (55%), Gaps = 2/220 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D++SWN++I G+ R     EA+R +++M S  V+P + TF  ++  CA   A    
Sbjct: 391 MPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADG 450

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I+   I+ N  L+ AL++MY +CG +  A+ VF+  Q  DV  WN+MI+G A H
Sbjct: 451 KMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQH 510

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +M+   + PD+ITF  +L+ C +   +E G++    + +   +Q  +  
Sbjct: 511 GSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRI-TESGLQLDVNL 569

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
             A++++  R G +++A  +  S+    DV+ W A++  C
Sbjct: 570 GNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAMIGGC 608



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 124/266 (46%), Gaps = 43/266 (16%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+DVV +N++I    ++    EA   +  M S  V  ++ T+ S++  C+   AL     
Sbjct: 292 DRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKL 351

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+ I E     +  +  ALI MY++CG +  A+E+F T+ + D+  WNA+I+G A    
Sbjct: 352 IHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARRED 411

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSH---------------------------- 154
             +A  ++ +M+   V P  +TFL LL+AC++                            
Sbjct: 412 RGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANA 471

Query: 155 -------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT-- 205
                  CG + E +  F+  ++R  I      + +M+    + G  E AY L   M   
Sbjct: 472 LMNMYRRCGSLMEAQNVFEGTQARDVIS-----WNSMIAGHAQHGSYETAYKLFQEMQNE 526

Query: 206 -MEPDVVVWRALLSACRTFKRLELGE 230
            +EPD + + ++LS C+  + LELG+
Sbjct: 527 ELEPDNITFASVLSGCKNPEALELGK 552



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 110/216 (50%), Gaps = 2/216 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +DVVS+N+M+G + + A   E L  F +M S  + PDK T+ +++        L+    +
Sbjct: 192 RDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRI 251

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H L +E+ +  +  +  AL+ M  +CG +  AK+ F  +   DV V+NA+I+ +A HG  
Sbjct: 252 HKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHN 311

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A   + +M    V  +  T+L +L ACS    +E G+    H+ S       ++   A
Sbjct: 312 VEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHI-SEDGHSSDVQIGNA 370

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++ +  R G + +A  L  +M    D++ W A+++ 
Sbjct: 371 LISMYARCGDLPKARELFYTMPKR-DLISWNAIIAG 405



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 111/219 (50%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DV+SWNS+I  + +     +A + F EM ++   P+K T+ S++  C     L + 
Sbjct: 88  MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENG 147

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ II+   + +  +  +L+ MY KCG +  A++VF  +   DV  +N M+   A  
Sbjct: 148 KKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQK 207

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +   +F +M    + PD +T++ LL A +   +++EG++    +     +   +  
Sbjct: 208 AYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKR-IHKLTVEEGLNSDIRV 266

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A+V +  R G ++ A      +  + DVVV+ AL++A
Sbjct: 267 GTALVTMCVRCGDVDSAKQAFKGIA-DRDVVVYNALIAA 304



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 33/227 (14%)

Query: 37  VEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAK 96
            E D+ T+ +++  C R   L  A  +H  ++E  +  +  LS  LI+MY KC  +  A 
Sbjct: 23  TETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAH 82

Query: 97  EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
           +VF  + R DV  WN++IS  A  G    A  +F +M+    +P+ IT++ +LTAC    
Sbjct: 83  QVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPA 142

Query: 157 LVEEGRKYFDH-MRSRYSIQPQLEH-----------------------------YGAMVD 186
            +E G+K     +++ Y   P++++                             Y  M+ 
Sbjct: 143 ELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLG 202

Query: 187 LLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELGE 230
           L  +  +++E  GL   M+ E   PD V +  LL A  T   L+ G+
Sbjct: 203 LYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGK 249


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/420 (45%), Positives = 274/420 (65%), Gaps = 14/420 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++DVVSW+++I G+V+   F EAL FF +ML    +P+++T  S +  C+ L AL+  
Sbjct: 207 MRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQG 266

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF-DTVQRNDVSVWNAMISGVAI 119
            W+H  I + +I++N  L A++IDMY+KCG+I+ A  VF +   +  V +WNAMI G A+
Sbjct: 267 KWIHAYIGKGEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAM 326

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG+  +A  +F +M++  + P+ +TF+ LL ACSH  +VEEG+ YF  M S Y+I P++E
Sbjct: 327 HGMPNEAINVFEQMKVEKISPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEIE 386

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HYG MVDLL R+G ++EA  +I+SM M PDV +W ALL+ACR +K +E G      I R+
Sbjct: 387 HYGCMVDLLSRSGLLKEAEDMISSMPMAPDVAIWGALLNACRIYKDMERG----YRIGRI 442

Query: 240 MGGD-------YVLLSNMYCYLKRWDTAENVREIMK-KKGVRKSQGKSWLELAGVIHQFK 291
           + G        +VLLSN+Y    RW+ A  +RE  +  +  +K  G S +EL G  HQF 
Sbjct: 443 IKGMDPNHIGCHVLLSNIYSTSGRWNEARILREKNEISRDRKKIPGCSSIELKGTFHQFL 502

Query: 292 AGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDV-SEEEKEGNLYHHSEKLALAY 350
            GD+SHP+++ I   L  +  + KS G++P    +L D+  EE+KE  L  HSEKLA+A+
Sbjct: 503 VGDQSHPQSREIYSFLDEMTTKLKSAGYVPELGELLHDIDDEEDKETALSVHSEKLAIAF 562

Query: 351 GILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G++ T+ GT IRI KNLR+C DCH   K IS++  RVIIVRDR R+H FE G+CSC DYW
Sbjct: 563 GLMNTANGTPIRIVKNLRVCGDCHQATKFISKVYNRVIIVRDRTRYHHFEDGICSCKDYW 622



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 99/250 (39%), Gaps = 34/250 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNAR-FDEALRFFREMLSS-KVEPDKFTFASVIYGCARLGALN 58
           +P  D+  +N+MI     +      +L  FR +     + P++++F      C     + 
Sbjct: 73  IPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGVQ 132

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSK------------------------------ 88
               V    ++  +E N  +  ALI MY K                              
Sbjct: 133 EGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYV 192

Query: 89  -CGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLG 147
             G + +AKE+FD ++  DV  W+ +I+G    G   +A   F KM      P+  T + 
Sbjct: 193 GSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVS 252

Query: 148 LLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME 207
            L ACS+   +++G K+      +  I+       +++D+  + G IE A  +     ++
Sbjct: 253 ALAACSNLVALDQG-KWIHAYIGKGEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVK 311

Query: 208 PDVVVWRALL 217
             V +W A++
Sbjct: 312 QKVWLWNAMI 321



 Score = 42.0 bits (97), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 35/180 (19%), Positives = 79/180 (43%), Gaps = 12/180 (6%)

Query: 44  FASVIYGCARLGAL--NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT 101
             S+I  C  +  +   HA  +   +I   +  N +L  A       C  +  A ++FD 
Sbjct: 19  LVSLIDSCKSMQQIKQTHAQLITTALISHPVSANKLLKLA------ACASLSYAHKLFDQ 72

Query: 102 VQRNDVSVWNAMISGVAIHGLAADASAIFTK--MEMFNVLPDSITFLGLLTACSHCGLVE 159
           + + D+ ++N MI   ++   +   S I  +   +   + P+  +F+   +AC +   V+
Sbjct: 73  IPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGVQ 132

Query: 160 EGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           EG +   H   +  ++  +    A++ + G+ G + E+  +     ++ D+  W  L++A
Sbjct: 133 EGEQVRIHA-VKVGLENNVFVVNALIGMYGKWGLVGESQKVF-QWAVDRDLYSWNTLIAA 190


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/414 (42%), Positives = 267/414 (64%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           M + DV SWNS+I  + +N    EA   F +M+   +V  +  T ++V+  CA  GAL  
Sbjct: 259 MEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQI 318

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H+ +++ ++E N ++  +++DMY KCG+++MA++ FD ++R +V  W  M++G  +
Sbjct: 319 GKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGM 378

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +A  +F +M    + P+ ITF+ +L ACSH GL++EG  +F+ M+  + ++P +E
Sbjct: 379 HGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIE 438

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY  MVDLLGRAG+++EAYGLI  M ++PD +VW +LL ACR  K +ELGE++   + +L
Sbjct: 439 HYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKL 498

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVLLSN+Y    RWD  E +R +MK  G+ K+ G S +E  G +H F  GD+ 
Sbjct: 499 DPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKE 558

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+ + I + L  L  + +  G++P    VL DV  EEK   L  HSEKLA+A+GI+ + 
Sbjct: 559 HPQHEKIYEYLDELNVKLQEVGYMPNVTSVLYDVDVEEKGMVLRVHSEKLAVAFGIMNSV 618

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PG+ I+I KNLRIC DCH  IK+IS+++ R I++RD  RFH F+ GLCSCGDYW
Sbjct: 619 PGSVIQIIKNLRICGDCHFAIKLISKIVNREIVIRDSKRFHHFKDGLCSCGDYW 672



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 129/270 (47%), Gaps = 55/270 (20%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-----------SSKVEPDKFTFASVIY 49
           +P+++VVSW SMI G+V+N R  EA+  F+E L              V  D      VI 
Sbjct: 147 IPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVIS 206

Query: 50  GCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV 109
            CAR+   +    VH L ++K  E    +   L+D Y+KCG+I ++++VFD ++  DV  
Sbjct: 207 ACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCS 266

Query: 110 WNAMISGVAIHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSH-------------- 154
           WN++I+  A +GL+ +A ++F+ M +   V  +++T   +L AC+H              
Sbjct: 267 WNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQV 326

Query: 155 ---------------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGH 193
                                CG VE  RK FD ++ +      ++ +  MV   G  GH
Sbjct: 327 VKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRK-----NVKSWTVMVAGYGMHGH 381

Query: 194 IEEAYGLITSMT---MEPDVVVWRALLSAC 220
            +EA  +   M    ++P+ + + ++L+AC
Sbjct: 382 GKEAMKVFYEMIRCGIKPNYITFVSVLAAC 411



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 136/329 (41%), Gaps = 64/329 (19%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           V SWNS+I  F R+    +AL  F  M    + P++ TF   I  C+ L  L     +H 
Sbjct: 51  VYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQ 110

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
                    +  +++ALIDMYSKCG +  A+++FD +   +V  W +MISG   +  A +
Sbjct: 111 QAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERARE 170

Query: 126 ASAIFTKMEMFN-----------VLPDSITFLGLLTACSH-------------------- 154
           A  +F +  + +           V  DS+    +++AC+                     
Sbjct: 171 AVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFE 230

Query: 155 ---------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199
                          CG +   RK FD M      +  +  + +++ +  + G   EA+ 
Sbjct: 231 GCLAVGNTLMDAYAKCGEISVSRKVFDGME-----ETDVCSWNSLIAVYAQNGLSVEAFS 285

Query: 200 LITSMTMEPDV----VVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLS----NMY 251
           L + M    +V    V   A+L AC     L++G+     + ++   D +++     +MY
Sbjct: 286 LFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMY 345

Query: 252 CYLKRWDTAENVREIMKKKGVRKSQGKSW 280
           C   R + A    + +K+K V     KSW
Sbjct: 346 CKCGRVEMARKAFDRLKRKNV-----KSW 369


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/413 (44%), Positives = 255/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D V+WN+MI G+ +  R  EAL  F  M    V+ ++ +   V+  C  L  L+H 
Sbjct: 204 MPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHG 263

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH  +   K+ +   L  AL+DMY+KCG +  A +VF  ++  +V  W++ I G+A++
Sbjct: 264 RWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMN 323

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   ++  +F  M+   V P+ ITF+ +L  CS  GLVEEGRK+FD MR+ Y I PQLEH
Sbjct: 324 GFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEH 383

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVD+ GRAG ++EA   I SM M P V  W ALL ACR +K  ELGE+A   IV + 
Sbjct: 384 YGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMYKNKELGEIAQRKIVELE 443

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y   K W++  ++R+ MK KGV+K  G S +E+ G +H+F  GD+SH
Sbjct: 444 DKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGVKKLPGCSVIEVDGEVHEFIVGDKSH 503

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    I+  L  + +  +  G++  T  VL D+ EEEKE  L  HSEK+A+A+G++    
Sbjct: 504 PRYDEIEMKLEEISKCLRLSGYVANTNPVLFDIEEEEKEDALSKHSEKVAIAFGLISLKG 563

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IR+  NLRIC DCH+  KMIS++  R IIVRDR RFH F+ G CSC DYW
Sbjct: 564 VVPIRVVMNLRICWDCHNVAKMISKIFNREIIVRDRNRFHHFKDGECSCKDYW 616



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 117/251 (46%), Gaps = 36/251 (14%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK---VEPDKFTFASVIYGCARLGALNH 59
           +  + + NSMI  + +++   ++  F+  +L S    + PD +TF  ++  CA+L A   
Sbjct: 71  NPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVT 130

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYS-------------------------------K 88
              VH  +I+   EL+  +   L+ MY+                               K
Sbjct: 131 GLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAK 190

Query: 89  CGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGL 148
           CG I  A+++FD +   D   WNAMI+G A  G + +A  +F  M+M  V  + ++ + +
Sbjct: 191 CGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLV 250

Query: 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
           L+AC+H  +++ GR    ++  RY ++  +    A+VD+  + G+++ A  +   M  E 
Sbjct: 251 LSACTHLQVLDHGRWVHAYVE-RYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMK-ER 308

Query: 209 DVVVWRALLSA 219
           +V  W + +  
Sbjct: 309 NVYTWSSAIGG 319


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/413 (44%), Positives = 265/413 (64%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++++SW SMI G V   +  EAL  F  M ++ ++ D     S +  CA LG L+  
Sbjct: 210 MPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQG 269

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H  I + +IE++ IL   LIDMY+KCG ++ A EVF  ++   VSVW AMISG AIH
Sbjct: 270 KWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIH 329

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A   F KM+   V P+ +TF G+LTACSH GLV E +  F+ M   +  +P +EH
Sbjct: 330 GRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEH 389

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV---AIVNIS 237
           YG MVDLLGRAG ++EA  LI +M ++P+  +W ALL+AC     LELG+     ++ + 
Sbjct: 390 YGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVD 449

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              GG Y+ L++++     W+ A  VR  MK++GV K  G S + + G  H+F AGD SH
Sbjct: 450 PGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESH 509

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + ID +L  +++R + EG+ P    +L+D+ ++EKE  ++HHSEKLA+ +G++ T P
Sbjct: 510 PQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKP 569

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KNLR+C DCH+ IK+IS++  R I++RDR RFH F+ G C+CGDYW
Sbjct: 570 GMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 108/243 (44%), Gaps = 35/243 (14%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           WN+MI G+  +   +EAL  +  ML   V  + +TF  ++  C+ + A      +H  II
Sbjct: 86  WNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHII 145

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWN----------------- 111
           +         + +L+++YSK G I+ A+ +FD V + D   WN                 
Sbjct: 146 KMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYE 205

Query: 112 --------------AMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL 157
                         +MISG    G   +A  +F +M+   +  D++  +  L AC+  G+
Sbjct: 206 IFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGV 265

Query: 158 VEEGRKYFDHMRS-RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRAL 216
           +++G+    +++     I P L     ++D+  + G +EEA  +   M  E  V VW A+
Sbjct: 266 LDQGKWIHAYIKKHEIEIDPILG--CVLIDMYAKCGDLEEAIEVFRKME-EKGVSVWTAM 322

Query: 217 LSA 219
           +S 
Sbjct: 323 ISG 325



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 93/235 (39%), Gaps = 43/235 (18%)

Query: 45  ASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYS--KCGKIQMAKEVFDTV 102
           A  ++   R   +     +H  +++  + L+ I ++ L+   +    G +  A+ VFD +
Sbjct: 19  AQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRI 78

Query: 103 QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR 162
            R +  +WN MI G +      +A  ++  M   +V  ++ TF  LL ACS     EE +
Sbjct: 79  FRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQ 138

Query: 163 KYFDHM------RSRYSIQPQLEHY------------------------GAMVDLLGRAG 192
           +   H+         Y+    L  Y                         +M+D   + G
Sbjct: 139 QIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCG 198

Query: 193 HIEEAYGLITSMTMEPDVVVWRALLSAC----------RTFKRLELGEVAIVNIS 237
            IE AY +   M  E +++ W +++S C            F R++   + + N++
Sbjct: 199 EIEMAYEIFNHMP-ERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVA 252


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/413 (44%), Positives = 253/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M DKD V+W +M+GG+  N    EAL  F  M +  V PD +  A  +  C RLGAL+  
Sbjct: 280 MRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLG 339

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                ++   +   N +L  ALIDMY+KCG    A  VF  +++ D+ VWNAMI G+ + 
Sbjct: 340 RQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMT 399

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +  +ME   V  +  TF+GLL +C+H GL+++GR+YF +M   Y I P++EH
Sbjct: 400 GHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEH 459

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG +VDLL RAG ++EA+ LI  M M  + V+  ALL  C+  +  EL E  +  + RL 
Sbjct: 460 YGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLE 519

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G+YV+LSN+Y    RW+ A  +R  MK+KGV K    SW+E  G +H+F+ GD+SH
Sbjct: 520 PWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSH 579

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P +  I K L  L    K+ G+ P TE+V+ DV +EEKE  L HHSEKLA+A+ +L T P
Sbjct: 580 PLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGP 639

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR++KNLR+C DCH+ IK+ISR+  R IIVRD  RFH F  G CSC DYW
Sbjct: 640 GETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 692



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 108/218 (49%), Gaps = 4/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP    VSW ++I  ++      EA+   R   ++ + PD FT   V+  CAR+  L   
Sbjct: 179 MPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATG 238

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V     ++ I  +  ++ A +D+Y KCG++  A+EVFD ++  D   W AM+ G A +
Sbjct: 239 ETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASN 298

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR-SRYSIQPQLE 179
           G   +A  +F  M+   V PD     G L+AC+  G ++ GR+    +    +   P L 
Sbjct: 299 GHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG 358

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              A++D+  + G   EA+ +   M  + D++VW A++
Sbjct: 359 --TALIDMYAKCGSTAEAWVVFQQMRKK-DIIVWNAMI 393



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 107/277 (38%), Gaps = 48/277 (17%)

Query: 39  PDKFTFASVIYGCARLG-ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE 97
           P   TF   +   +RL   L     +H   ++     N  +  +L+ +Y++CG +  A+ 
Sbjct: 115 PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQR 174

Query: 98  VFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH--- 154
           VFD +       W A+I+     G   +A  +        + PDS T + +LTAC+    
Sbjct: 175 VFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVAD 234

Query: 155 --------------------------------CGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
                                           CG + + R+ FD MR + ++      +G
Sbjct: 235 LATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVA-----WG 289

Query: 183 AMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELGEVAI--VNIS 237
           AMV      GH  EA  L  +M  E   PD       LSAC     L+LG  AI  V+  
Sbjct: 290 AMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWD 349

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAEN--VREIMKKKGV 272
             +    +  + +  Y K   TAE   V + M+KK +
Sbjct: 350 EFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDI 386


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/412 (44%), Positives = 258/412 (62%), Gaps = 5/412 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDVVSWN++IGG+     + EAL  F+EML S   P+  T  S++  CA LGA++   W+
Sbjct: 262 KDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWI 321

Query: 64  HNLIIEKKIELNFI--LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           H  I +K  ++     L  +LIDMY+KCG I+ A +VF+++    +S WNAMI G A+HG
Sbjct: 322 HVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHG 381

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
            A     +F++M    + PD ITF+GLL+ACSH G ++ GR  F  M   Y I P+LEHY
Sbjct: 382 RANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHY 441

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL-- 239
           G M+DLLG +G  +EA  +I +M MEPD V+W +LL ACR    LEL E    N+ ++  
Sbjct: 442 GCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEP 501

Query: 240 -MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
              G YVLLSN+Y     WD    VR ++  KG++K  G S +E+   +H+F  GD+ HP
Sbjct: 502 ENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHP 561

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
             + I  +L  +    +  GF+P T  VL ++ EE KEG L HHSEKLA+A+G++ T PG
Sbjct: 562 RNREIYGMLEEMEALLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPG 621

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T++ I KNLR+C +CH   K++S++ +R II RDR RFH F  G+CSC D+W
Sbjct: 622 TKLTIVKNLRVCRNCHEATKLVSKIYKREIIARDRTRFHHFRDGVCSCNDFW 673



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 136/290 (46%), Gaps = 43/290 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KDVVSWN+MI G+     + EAL  F+EM+ + V PD+ T  +V+  CA+  ++   
Sbjct: 158 IPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELG 217

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ I +     N  +  ALID+YSKCG+++ A  +F+ +   DV  WN +I G    
Sbjct: 218 RQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHM 277

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---KYFDHMRSRYSIQPQ 177
            L  +A  +F +M      P+ +T + +L AC+H G ++ GR    Y D      +  P 
Sbjct: 278 NLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPS 337

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMT-------------------------------- 205
           L    +++D+  + G IE A+ +  SM                                 
Sbjct: 338 LR--TSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRK 395

Query: 206 --MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCY 253
             +EPD + +  LLSAC    +L+LG     +I + M  DY +   +  Y
Sbjct: 396 NGIEPDDITFVGLLSACSHSGKLDLGR----HIFKSMTQDYDITPKLEHY 441



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 113/240 (47%), Gaps = 33/240 (13%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           WN+M+ G+  ++    AL+ +  M+S  + P+ +TF  ++  CA+  A      +H  ++
Sbjct: 34  WNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVL 93

Query: 69  EKKIELNFILSAALIDMYSKCGK-------------------------------IQMAKE 97
           +   E +  +  +LI MY++ G+                               I+ A+E
Sbjct: 94  KLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQE 153

Query: 98  VFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL 157
           +FD +   DV  WNAMISG A  G   +A  +F +M   NV PD  T + +L+AC+    
Sbjct: 154 MFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRS 213

Query: 158 VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           VE GR+    +   +     L+   A++DL  + G +E A GL   ++ + DVV W  L+
Sbjct: 214 VELGRQVHSWI-DDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCK-DVVSWNTLI 271



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 2/125 (1%)

Query: 95  AKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
           A  VF T+Q  +  +WN M+ G A+      A  ++  M    +LP+S TF  LL +C+ 
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
               EEG++   H+  +   +P L  + +++ +  + G +E+A+ +    +   DVV + 
Sbjct: 79  SKAFEEGQQIHGHVL-KLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHR-DVVSYT 136

Query: 215 ALLSA 219
           AL++ 
Sbjct: 137 ALITG 141



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 7/158 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K + SWN+MI GF  + R +     F  M  + +EPD  TF  ++  C+  G L+  
Sbjct: 362 MLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLG 421

Query: 61  -YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
            +   ++  +  I         +ID+    G  + AKE+  T+    D  +W +++    
Sbjct: 422 RHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACR 481

Query: 119 IHG---LAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
            HG   LA   +    K+E  N  P S   L  + A +
Sbjct: 482 RHGNLELAESFARNLMKVEPEN--PGSYVLLSNIYATA 517


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/413 (44%), Positives = 265/413 (64%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++++SW SMI G V   +  EAL  F  M ++ ++ D     S +  CA LG L+  
Sbjct: 210 MPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQG 269

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H  I + +IE++ IL   LIDMY+KCG ++ A EVF  ++   VSVW AMISG AIH
Sbjct: 270 KWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIH 329

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A   F KM+   V P+ +TF G+LTACSH GLV E +  F+ M   +  +P +EH
Sbjct: 330 GRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEH 389

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV---AIVNIS 237
           YG MVDLLGRAG ++EA  LI +M ++P+  +W ALL+AC     LELG+     ++ + 
Sbjct: 390 YGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVD 449

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              GG Y+ L++++     W+ A  VR  MK++GV K  G S + + G  H+F AGD SH
Sbjct: 450 PGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESH 509

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + ID +L  +++R + EG+ P    +L+D+ ++EKE  ++HHSEKLA+ +G++ T P
Sbjct: 510 PQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKP 569

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KNLR+C DCH+ IK+IS++  R I++RDR RFH F+ G C+CGDYW
Sbjct: 570 GMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 109/243 (44%), Gaps = 35/243 (14%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           WN+MI G+  +   +EAL  +  ML   V  + +TF  ++  C+ + AL     +H  II
Sbjct: 86  WNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHII 145

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWN----------------- 111
           +         + +L+++YSK G I+ A+ +FD V + D   WN                 
Sbjct: 146 KMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYE 205

Query: 112 --------------AMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL 157
                         +MISG    G   +A  +F +M+   +  D++  +  L AC+  G+
Sbjct: 206 IFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGV 265

Query: 158 VEEGRKYFDHMRS-RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRAL 216
           +++G+    +++     I P L     ++D+  + G +EEA  +   M  E  V VW A+
Sbjct: 266 LDQGKWIHAYIKKHEIEIDPILG--CVLIDMYAKCGDLEEAIEVFRKME-EKGVSVWTAM 322

Query: 217 LSA 219
           +S 
Sbjct: 323 ISG 325



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 94/235 (40%), Gaps = 43/235 (18%)

Query: 45  ASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYS--KCGKIQMAKEVFDTV 102
           A  ++   R   +     +H  +++  + L+ I ++ L+   +    G +  A+ VFD +
Sbjct: 19  AQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRI 78

Query: 103 QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR 162
            R +  +WN MI G +      +A  ++  M   +V  ++ TF  LL ACS    +EE +
Sbjct: 79  FRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQ 138

Query: 163 KYFDHM------RSRYSIQPQLEHY------------------------GAMVDLLGRAG 192
           +   H+         Y+    L  Y                         +M+D   + G
Sbjct: 139 QIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCG 198

Query: 193 HIEEAYGLITSMTMEPDVVVWRALLSAC----------RTFKRLELGEVAIVNIS 237
            IE AY +   M  E +++ W +++S C            F R++   + + N++
Sbjct: 199 EIEMAYEIFNHMP-ERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVA 252


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/413 (43%), Positives = 251/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K++V+WNSMI G+V N R ++ L+ F+ M+ S+V P+  + +SV+ GC+ L AL   
Sbjct: 255 MAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLG 314

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L+ +  +  +     +LI MY KCG +  A ++F  + R DV  WNAMISG A H
Sbjct: 315 RQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQH 374

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F KM    + PD ITF+ ++ AC+H G V+ G +YF  M+  + I+ +  H
Sbjct: 375 GAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVH 434

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  ++DLLGRAG ++EA  LI  M   P   ++  LL ACR  K L+L E A   ++N+ 
Sbjct: 435 YTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLD 494

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 YV L+N+Y    +WD    VR++MK+  V K  G SW+E+  V H+F++ DR H
Sbjct: 495 PTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLH 554

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE  +I K L  L  + K  G++P  E  L DV EE KE  L  HSEKLA+A+G++KT+P
Sbjct: 555 PELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAP 614

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IR+ KNLR+C DCH  IK IS + +R IIVRD  RFH F  G CSCGDYW
Sbjct: 615 GTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 108/219 (49%), Gaps = 10/219 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD+ SWN++I GF +N +  +A   F  M     E +  +++++I G    G L  A
Sbjct: 162 MPVKDIASWNTLISGFAQNGQMQKAFDLFSVM----PEKNGVSWSAMISGYVEHGDLEAA 217

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             ++  +  K +    ++  A++  Y K GK+++A+ +F  +   ++  WN+MI+G   +
Sbjct: 218 EELYKNVGMKSV----VVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVEN 273

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
             A D   +F  M    V P+ ++   +L  CS+   +  GR+    + S+  +      
Sbjct: 274 CRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQ-MHQLVSKSPLSKDTTA 332

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +++ +  + G ++ A+ L   M  + DV+ W A++S 
Sbjct: 333 CTSLISMYCKCGDLDSAWKLFLEMPRK-DVITWNAMISG 370



 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 105/237 (44%), Gaps = 29/237 (12%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARL-GALNHAYWV 63
           DVVS N  I  FVR    + A   F +M          T+ +++ G  ++ G +  A+ +
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTT----VTWNTMLSGYTKVAGKVKEAHEL 127

Query: 64  HNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            + I E   +  N +L       Y +   ++ A   F+ +   D++ WN +ISG A +G 
Sbjct: 128 FDKIPEPDSVSYNIMLVC-----YLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQ 182

Query: 123 AADASAIFTKMEMFNVLP--DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
              A       ++F+V+P  + +++  +++     G +E   + + ++  +  +      
Sbjct: 183 MQKA------FDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVET--- 233

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA----CRTFKRLELGEVAI 233
             AM+    + G +E A  +   M ++ ++V W ++++     CR    L++ +  I
Sbjct: 234 --AMLTGYMKFGKVELAERIFQRMAVK-NLVTWNSMIAGYVENCRAEDGLKVFKTMI 287


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/413 (43%), Positives = 252/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K++V+WNSMI G+V N R ++ L+ F+ M+ S+V P+  + +SV+ GC+ L AL   
Sbjct: 255 MAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLG 314

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L+ +  +  +     +LI MY KCG +  A ++F  + R DV  WNAMISG A H
Sbjct: 315 RQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQH 374

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F KM    + PD ITF+ ++ AC+H G V+ G +YF  M+  + I+ +  H
Sbjct: 375 GAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVH 434

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  ++DLLGRAG ++EA  LI  M  +P   ++  LL ACR  K L+L E A   ++N+ 
Sbjct: 435 YTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLD 494

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 YV L+N+Y    +WD    VR++MK+  V K  G SW+E+  V H+F++ DR H
Sbjct: 495 PTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLH 554

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE  +I K L  L  + K  G++P  E  L DV EE KE  L  HSEKLA+A+G++KT+P
Sbjct: 555 PELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAP 614

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IR+ KNLR+C DCH  IK IS + +R IIVRD  RFH F  G CSCGDYW
Sbjct: 615 GTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 108/219 (49%), Gaps = 10/219 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD+ SWN++I GF +N +  +A   F  M     E +  +++++I G    G L  A
Sbjct: 162 MPVKDIASWNTLISGFAQNGQMQKAFDLFSVM----PEKNGVSWSAMISGYVEHGDLEAA 217

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             ++  +  K +    ++  A++  Y K GK+++A+ +F  +   ++  WN+MI+G   +
Sbjct: 218 EELYKNVGMKSV----VVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVEN 273

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
             A D   +F  M    V P+ ++   +L  CS+   +  GR+    + S+  +      
Sbjct: 274 CRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQ-MHQLVSKSPLSKDTTA 332

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +++ +  + G ++ A+ L   M  + DV+ W A++S 
Sbjct: 333 CTSLISMYCKCGDLDSAWKLFLEMPRK-DVISWNAMISG 370



 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 105/237 (44%), Gaps = 29/237 (12%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARL-GALNHAYWV 63
           DVVS N  I  FVR    + A   F +M          T+ +++ G  ++ G +  A+ +
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTT----VTWNTMLSGYTKVAGKVKEAHEL 127

Query: 64  HNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            + I E   +  N +L       Y +   ++ A   F+ +   D++ WN +ISG A +G 
Sbjct: 128 FDKIPEPDSVSYNIMLVC-----YLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQ 182

Query: 123 AADASAIFTKMEMFNVLP--DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
              A       ++F+V+P  + +++  +++     G +E   + + ++  +  +      
Sbjct: 183 MQKA------FDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVET--- 233

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA----CRTFKRLELGEVAI 233
             AM+    + G +E A  +   M ++ ++V W ++++     CR    L++ +  I
Sbjct: 234 --AMLTGYMKFGKVELAERIFQRMAVK-NLVTWNSMIAGYVENCRAEDGLKVFKTMI 287


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/413 (44%), Positives = 253/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M DKD V+W +M+GG+  N    EAL  F  M +  V PD +  A  +  C RLGAL+  
Sbjct: 233 MRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLG 292

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                ++   +   N +L  ALIDMY+KCG    A  VF  +++ D+ VWNAMI G+ + 
Sbjct: 293 RQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMT 352

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +  +ME   V  +  TF+GLL +C+H GL+++GR+YF +M   Y I P++EH
Sbjct: 353 GHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEH 412

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG +VDLL RAG ++EA+ LI  M M  + V+  ALL  C+  +  EL E  +  + RL 
Sbjct: 413 YGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLE 472

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G+YV+LSN+Y    RW+ A  +R  MK+KGV K    SW+E  G +H+F+ GD+SH
Sbjct: 473 PWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSH 532

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P +  I K L  L    K+ G+ P TE+V+ DV +EEKE  L HHSEKLA+A+ +L T P
Sbjct: 533 PLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGP 592

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR++KNLR+C DCH+ IK+ISR+  R IIVRD  RFH F  G CSC DYW
Sbjct: 593 GETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 108/218 (49%), Gaps = 4/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP    VSW ++I  ++      EA+   R   ++ + PD FT   V+  CAR+  L   
Sbjct: 132 MPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATG 191

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V     ++ I  +  ++ A +D+Y KCG++  A+EVFD ++  D   W AM+ G A +
Sbjct: 192 ETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASN 251

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR-SRYSIQPQLE 179
           G   +A  +F  M+   V PD     G L+AC+  G ++ GR+    +    +   P L 
Sbjct: 252 GHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG 311

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              A++D+  + G   EA+ +   M  + D++VW A++
Sbjct: 312 --TALIDMYAKCGSTAEAWVVFQQMRKK-DIIVWNAMI 346



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 107/277 (38%), Gaps = 48/277 (17%)

Query: 39  PDKFTFASVIYGCARLG-ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE 97
           P   TF   +   +RL   L     +H   ++     N  +  +L+ +Y++CG +  A+ 
Sbjct: 68  PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQR 127

Query: 98  VFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH--- 154
           VFD +       W A+I+     G   +A  +        + PDS T + +LTAC+    
Sbjct: 128 VFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVAD 187

Query: 155 --------------------------------CGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
                                           CG + + R+ FD MR + ++      +G
Sbjct: 188 LATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVA-----WG 242

Query: 183 AMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELGEVAI--VNIS 237
           AMV      GH  EA  L  +M  E   PD       LSAC     L+LG  AI  V+  
Sbjct: 243 AMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWD 302

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAEN--VREIMKKKGV 272
             +    +  + +  Y K   TAE   V + M+KK +
Sbjct: 303 EFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDI 339


>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
 gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
 gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
          Length = 604

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/411 (45%), Positives = 257/411 (62%), Gaps = 4/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           DK++ +W++MIGG+ R    +EAL  FREM ++ V PD+ T  SVI  CA+ GAL+   W
Sbjct: 195 DKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRW 254

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  I  K I ++  LS ALIDMY+KCG I+ AK VFD +   D   W+AMI G+AIHGL
Sbjct: 255 VHAFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGL 314

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
              A  +F++M    V P+++TF+G+L+AC+H GLV EGR+Y+  M+    I+P +E+YG
Sbjct: 315 VEVALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTMQ-ELGIKPSMENYG 373

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            MVDL  R+  ++EAY  +T M + P+ V+WR LL A +   R ++ + A   ++ +   
Sbjct: 374 CMVDLFCRSSLLDEAYSFVTGMAIPPNSVIWRTLLVASKNSNRFDIVQSASKKLLELEPC 433

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
              +YVLLSN+Y    +WD    +R+ MK+  V    G S +E+ G +H+F   D SHPE
Sbjct: 434 NPENYVLLSNLYASNSQWDRVSYMRKKMKENNVNVVAGCSSIEINGYLHKFVVSDDSHPE 493

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
            + I  +L  +  R    G  P T  VL DV EEEKE  L  HSE+LA+AYG+LKT    
Sbjct: 494 IKEIRLLLREIADRVVRAGHKPWTAAVLHDVGEEEKEVALCEHSERLAIAYGLLKTKAPH 553

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IR+ KNLR C DCH   K++S+   R IIVRDR+RFHRF  G CSC D+W
Sbjct: 554 VIRVVKNLRFCPDCHEVAKIVSKSYDREIIVRDRVRFHRFVEGSCSCKDFW 604



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 112/222 (50%), Gaps = 7/222 (3%)

Query: 1   MPDKDVVSWNSMI----GGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA 56
           +P+     +NS+I             D  L + R + +    P+ FT A  +  C+ + A
Sbjct: 87  IPEPTAFCYNSLIRALSSAAGAAPAADTVLVYRRMLRAGSPLPNSFTLAFALKACSVVPA 146

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD-TVQRNDVSVWNAMIS 115
           L     +H+    + +E +  +   L+++Y+KC ++ +A+ VFD  V   +++ W+AMI 
Sbjct: 147 LGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDKNLAAWSAMIG 206

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           G +  G+  +A  +F +M+  +V PD +T + +++AC+  G ++ GR +      R  I 
Sbjct: 207 GYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGR-WVHAFIDRKGIT 265

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             LE   A++D+  + G IE A G+  +M  E D   W A++
Sbjct: 266 VDLELSTALIDMYAKCGLIERAKGVFDAMA-ERDTKAWSAMI 306



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D  +W++MI G   +   + AL+ F  ML  KV P+  TF  V+  CA  G +N  
Sbjct: 294 MAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEG 353

Query: 61  --YW 62
             YW
Sbjct: 354 RRYW 357


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  370 bits (949), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 182/413 (44%), Positives = 262/413 (63%), Gaps = 3/413 (0%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            M ++D+V+W  MIGG+      +E+L  F +M    V PDK    +V++ CA+LGA++ A
Sbjct: 897  MXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKA 956

Query: 61   YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              + + I  KK +L+ IL  A+IDM++KCG ++ A+E+FD ++  +V  W+AMI+    H
Sbjct: 957  RTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH 1016

Query: 121  GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            G    A  +F  M    +LP+ IT + LL ACSH GLVEEG ++F  M   YS++  ++H
Sbjct: 1017 GQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKH 1076

Query: 181  YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
            Y  +VDLLGRAG ++EA  LI SMT E D  +W A L ACRT K + L E A  ++  L 
Sbjct: 1077 YTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQ 1136

Query: 241  ---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                G Y+LLSN+Y    RW+    +R++M ++ ++K  G +W+E+    HQF  GD +H
Sbjct: 1137 PQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTH 1196

Query: 298  PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            P ++ I ++L SL  + +  G++P T  VL DV EE K G LY HSEKLA+A+G++ T  
Sbjct: 1197 PRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPE 1256

Query: 358  GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             T IRI KNLR+C DCH++ K++S +  RVIIVRD  RFH F+ G CSCGDYW
Sbjct: 1257 HTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 1309



 Score =  318 bits (814), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 160/371 (43%), Positives = 232/371 (62%), Gaps = 3/371 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D+V+W  MIGG+    + +E+L  F +M    V PDK    +V++ CA+LGA++ A
Sbjct: 221 MQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKA 280

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             + + I  KK +L+ IL  A+IDMY+KCG ++ A+E+FD ++  +V  W+AMI+    H
Sbjct: 281 RIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH 340

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F  M    +LPD IT   LL ACSH GLVEEG ++F  M   YS++  ++H
Sbjct: 341 GQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKH 400

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  +VDLLGRAG ++EA  LI SMT+E D  +W A L ACRT K + L E A  ++  L 
Sbjct: 401 YTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQ 460

Query: 241 G---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    RW+    +R++M ++ ++K+ G +W+E+    HQF  GD +H
Sbjct: 461 SQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGDTTH 520

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P ++ I ++L SL  + +  G++P T  VL DV EE K G LY HSEKLA+A+G++ T  
Sbjct: 521 PRSKEIYEMLKSLSNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPE 580

Query: 358 GTEIRISKNLR 368
            T IRI KNLR
Sbjct: 581 HTPIRIIKNLR 591



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 116/216 (53%), Gaps = 2/216 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D VSW+ M+GGF +   +      FRE++     PD +T   VI  C  L  L     +
Sbjct: 123 RDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLI 182

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H+++ +  ++L+  + AAL+DMY KC +I+ A+ +FD +Q  D+  W  MI G A  G A
Sbjct: 183 HHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKA 242

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            ++  +F KM    V+PD +  + ++ AC+  G + + R   D+++ R   Q  +    A
Sbjct: 243 NESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQ-RKKFQLDVILGTA 301

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           M+D+  + G +E A  +   M  E +V+ W A+++A
Sbjct: 302 MIDMYAKCGCVESAREIFDRME-EKNVISWSAMIAA 336



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 115/216 (53%), Gaps = 2/216 (0%)

Query: 4    KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
            +D VSW+ M+GGF +   +      FRE++     PD +T   VI  C  L  L     +
Sbjct: 799  RDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLI 858

Query: 64   HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
            H+++ +  ++L+  + AAL+DMY KC +I+ A+ +FD +   D+  W  MI G A  G A
Sbjct: 859  HHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNA 918

Query: 124  ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             ++  +F KM    V+PD +  + ++ AC+  G + + R   D+++ R   Q  +    A
Sbjct: 919  NESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQ-RKKFQLDVILGTA 977

Query: 184  MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            M+D+  + G +E A  +   M  E +V+ W A+++A
Sbjct: 978  MIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAA 1012



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 6/147 (4%)

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           N I++  L+  YS    +  A  +FD +   D   W+ M+ G A  G   +    F ++ 
Sbjct: 769 NLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELI 828

Query: 135 MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY--GAMVDLLGRAG 192
                PD+ T   ++ AC     ++ GR    H+  ++ +   L+H+   A+VD+ G+  
Sbjct: 829 RCGARPDNYTLPFVIRACRDLKNLQMGR-LIHHIVYKFGL--DLDHFVCAALVDMYGKCR 885

Query: 193 HIEEAYGLITSMTMEPDVVVWRALLSA 219
            IE+A  L   M  E D+V W  ++  
Sbjct: 886 EIEDARFLFDKMX-ERDLVTWTVMIGG 911



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 6/147 (4%)

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           N +++  LI  YS    +  A  +FD +   D   W+ M+ G A  G   +    F ++ 
Sbjct: 93  NIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELI 152

Query: 135 MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY--GAMVDLLGRAG 192
                PD+ T   ++ AC     ++ GR    H+  ++ +   L+H+   A+VD+  +  
Sbjct: 153 RCGARPDNYTLPFVIRACRDLKNLQMGR-LIHHIVYKFGL--DLDHFVCAALVDMYVKCR 209

Query: 193 HIEEAYGLITSMTMEPDVVVWRALLSA 219
            IE+A  L   M  E D+V W  ++  
Sbjct: 210 EIEDARFLFDKM-QERDLVTWTVMIGG 235


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 178/415 (42%), Positives = 263/415 (63%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML--SSKVEPDKFTFASVIYGCARLGALN 58
           M D+DVVSWN+MI  + +N    EAL  + +ML     V  +  T ++V+  CA  GA+ 
Sbjct: 254 MMDRDVVSWNTMIALYAQNGLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQ 313

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +HN ++   +E N  +  +++DMYSKCGK++MA + F  ++  ++  W+AMI+G  
Sbjct: 314 TGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYG 373

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG   +A  +FT M    + P+ ITF+ +L ACSH GL+ EGR +++ M++ + I+P +
Sbjct: 374 MHGYGQEALHVFTDMRKSGLKPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGV 433

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVN 235
           EHYG MVDLLGRAG ++EAYGLI  M ++PD  +W ALLSACR +K +EL ++    +  
Sbjct: 434 EHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAALWGALLSACRIYKNVELAKICAERLFE 493

Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           +     G YVLLSN+Y     W   E +R ++K +G+ K  G S +EL G  H F  GD+
Sbjct: 494 LDATNSGYYVLLSNIYAEAGMWKEVERMRVLVKTRGIEKPPGYSSVELKGKTHLFYVGDK 553

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SHP+ + I   L  L++R    G++P T  VL D+  EE+E  L  HSEKLA+A+ ++ +
Sbjct: 554 SHPQYKEIYAYLEKLLERIHDAGYVPNTGSVLHDLDVEERESMLRIHSEKLAVAFALMNS 613

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             G+ I + KNLR+C DCH+ IK+I++L  R II+RD  RFH F+ GLCSCGDYW
Sbjct: 614 VQGSVIHVIKNLRVCTDCHAAIKIITKLTGREIIIRDLKRFHHFKDGLCSCGDYW 668



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 113/225 (50%), Gaps = 9/225 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEP--DKFTFASVIYGCARLGALN 58
           +P  + V   +M  G +RN      L  FR M++S      D+      +   AR+    
Sbjct: 150 IPTPNPVIVTAMASGCMRNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSASARVPDRG 209

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCG--KIQMAKEVFDTVQRNDVSVWNAMISG 116
               +H L+ +  ++    ++  +ID Y+K G   +  A+++FD + R DV  WN MI+ 
Sbjct: 210 ITGGIHALVSKIGLDGQTGVANTIIDAYAKGGGHDLGAARKLFDMMDR-DVVSWNTMIAL 268

Query: 117 VAIHGLAADASAIFTKMEMF--NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI 174
            A +GL+ +A  +++KM +   +V  +++T   +L AC+H G ++ G++  + +  R  +
Sbjct: 269 YAQNGLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQV-VRMGL 327

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +  +    ++VD+  + G +E A+     +  + +++ W A+++ 
Sbjct: 328 EDNVYVGTSVVDMYSKCGKVEMAWKAFQKIKGK-NILSWSAMIAG 371


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 190/413 (46%), Positives = 250/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +KDVV W+++I G+  N    EAL  F EM    V PD +    V   C+RLGAL   
Sbjct: 264 MVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELG 323

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W   L+   +   N +L  ALID Y+KCG +  AKEVF  ++R D  V+NA+ISG+A+ 
Sbjct: 324 NWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMC 383

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +M    + PD  TF+GLL  C+H GLV++G +YF  M S +S+ P +EH
Sbjct: 384 GHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEH 443

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDL  RAG + EA  LI SM ME + +VW ALL  CR  K  +L E  +  +  L 
Sbjct: 444 YGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELE 503

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    RWD AE +R  + +KG++K  G SW+E+ GV+H+F  GD SH
Sbjct: 504 PWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGDTSH 563

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P +  I + L SL +  +  G+ P TE VL DV EEEKE  L  HSEKLA+A+ ++ T  
Sbjct: 564 PLSHKIYEKLESLFKDLREAGYNPTTEFVLFDVEEEEKEYFLGCHSEKLAVAFALISTGA 623

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IR+ KNLR+C DCH  IK++S++  R IIVRD  RFH F  G CSC DYW
Sbjct: 624 KDVIRVVKNLRVCGDCHEAIKLVSKVTGREIIVRDNNRFHHFTEGSCSCRDYW 676



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 125/258 (48%), Gaps = 43/258 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+K+VVSW ++I G++ +  F EAL  FR +L   + PD FT   ++Y C+R+G L   
Sbjct: 163 IPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASG 222

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+   + E     N  ++ +L+DMY+KCG ++ A+ VFD +   DV  W+A+I G A +
Sbjct: 223 RWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASN 282

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSH-------------------------- 154
           G+  +A  +F +M+  NV PD    +G+ +ACS                           
Sbjct: 283 GMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLG 342

Query: 155 ---------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
                    CG V + ++ F  MR +  +      + A++  L   GH+  A+G+   M 
Sbjct: 343 TALIDFYAKCGSVAQAKEVFKGMRRKDCVV-----FNAVISGLAMCGHVGAAFGVFGQMV 397

Query: 206 ---MEPDVVVWRALLSAC 220
              M+PD   +  LL  C
Sbjct: 398 KVGMQPDGNTFVGLLCGC 415



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 108/219 (49%), Gaps = 3/219 (1%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH-A 60
           P  ++  +N++I G V N  F +A+  +  M      PD FTF  V+  C RL    H  
Sbjct: 62  PHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVG 121

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+L+I+   + +  +   L+ +YSK G +  A++VFD +   +V  W A+I G    
Sbjct: 122 LSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIES 181

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F  +    + PDS T + +L ACS  G +  GR    +MR   S+      
Sbjct: 182 GCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVA 241

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             ++VD+  + G +EEA  +   M +E DVV W AL+  
Sbjct: 242 T-SLVDMYAKCGSMEEARRVFDGM-VEKDVVCWSALIQG 278



 Score = 38.9 bits (89), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 44/100 (44%)

Query: 54  LGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAM 113
           L +L+ A   H L++   +  +  L   L+         Q A  VF      ++ ++N +
Sbjct: 13  LKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTL 72

Query: 114 ISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
           I G+  +    DA +++  M      PD+ TF  +L AC+
Sbjct: 73  IRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACT 112


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 178/415 (42%), Positives = 266/415 (64%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNH 59
           MP KD+V+WN++I  + +N + +EAL  F E+ L   ++ ++ T  S +  CA++GAL  
Sbjct: 326 MPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALEL 385

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             W+H+ I +  I++NF +++ALI MYSKCG ++ A+EVF++V++ DV VW+AMI G+A+
Sbjct: 386 GRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAM 445

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG  ++A  +F KM+  NV P+ +TF  +  ACSH GLV+E    F  M S Y I P+ +
Sbjct: 446 HGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDK 505

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY  +VD+LGR+G++E+A   I +M + P   VW ALL AC+    L L E+A   +  L
Sbjct: 506 HYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLEL 565

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G +VLLSN+Y    +WD    +R+ M+  G++K  G S +E+ G+IH+F +GD +
Sbjct: 566 EPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNA 625

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEE-KEGNLYHHSEKLALAYGILKT 355
           HP ++ +   L  ++++ KS G+ P    VL  + EEE KE +L  HSEKLA+ YG++ T
Sbjct: 626 HPMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSLNLHSEKLAICYGLIST 685

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
                IR+ KNLR+C DCH+  K+IS+L  R IIVRDR RFH F  G CSC D+W
Sbjct: 686 EAPKAIRVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYRFHHFRNGQCSCNDFW 740



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 124/247 (50%), Gaps = 34/247 (13%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +KDVVSWNSMI GFV+    D+AL  F++M S  V+    T   V+  CA++  L     
Sbjct: 196 EKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRR 255

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ------------------- 103
           V + I E ++ +N  L+ A++DMY+KCG I+ AK +FD ++                   
Sbjct: 256 VCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISED 315

Query: 104 ------------RNDVSVWNAMISGVAIHGLAADASAIFTKMEMF-NVLPDSITFLGLLT 150
                       + D+  WNA+IS    +G   +A  +F ++++  N+  + IT +  L+
Sbjct: 316 YEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLS 375

Query: 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
           AC+  G +E GR    +++ +  I+       A++ +  + G +E+A  +  S+    DV
Sbjct: 376 ACAQVGALELGRWIHSYIK-KNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKR-DV 433

Query: 211 VVWRALL 217
            VW A++
Sbjct: 434 FVWSAMI 440



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 113/219 (51%), Gaps = 4/219 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE--PDKFTFASVIYGCARLGALN 58
           +P  +  +WN++I  +        ++  F +M+SS+ +  P+K+TF  +I   A + +L+
Sbjct: 91  IPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLS 150

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H + I+  +  +  ++ +LI  Y  CG +  A +VF T++  DV  WN+MI+G  
Sbjct: 151 LGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFV 210

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
             G    A  +F KME  +V    +T +G+L+AC+    +E GR+   ++     +   L
Sbjct: 211 QKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEEN-RVNVNL 269

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
               AM+D+  + G IE+A  L  +M  E D V W  +L
Sbjct: 270 TLANAMLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTML 307


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 183/416 (43%), Positives = 267/416 (64%), Gaps = 6/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KD+V+W +M+ G+ +NAR  EAL  F  M ++ V+ D+ T   VI  CA+LGA  +A
Sbjct: 232 LPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYA 291

Query: 61  YWVHNLIIEKKI--ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
            WV ++  +       N ++ +ALIDMY+KCG ++ A +VF+ ++  +V  +++MI G A
Sbjct: 292 NWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFA 351

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HGLA  A  +F +M    + P+ +TF+G+LTACSH G+VE+G++ F  M   + + P  
Sbjct: 352 MHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSE 411

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           +HY  MVDLLGRAG +EEA  L+  M M P   VW ALL ACR     ++ ++A  ++  
Sbjct: 412 DHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFE 471

Query: 239 LMG---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLE-LAGVIHQFKAGD 294
           L     G+Y+LLSN+Y    RWD    VR++M+ KG++K+ G SW+E   G+IH+F AGD
Sbjct: 472 LEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIHEFFAGD 531

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
            SHP+++ I + L  L+ R K  G+ P    V  D+S+EEK+  L  HSEKLALA+G+L 
Sbjct: 532 MSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKKRLLMSHSEKLALAFGLLT 591

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T+ G  IRI KNLRIC DCHS +   S++  R I+VRD +RFH F  G CSCG++W
Sbjct: 592 TNAGCTIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFHHFRDGRCSCGNFW 647



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 98/233 (42%), Gaps = 41/233 (17%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN-LI 67
           W ++I G+     F E++  +  M    + P  FTF +++  C+    +N    VH   I
Sbjct: 107 WTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTI 166

Query: 68  IEKKIELNFILSAALIDMYSKCG-------------------------------KIQMAK 96
           +      +  +   LIDMY KCG                                ++ A 
Sbjct: 167 LIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAAS 226

Query: 97  EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
           E+FD +   D+  W AM++G A +    +A  +F +M+   V  D +T +G+++AC+  G
Sbjct: 227 ELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLG 286

Query: 157 LVEEGRKYFDHMR-----SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
                 KY + +R     S +     +    A++D+  + G +E+AY +   M
Sbjct: 287 ----AAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERM 335



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 103/250 (41%), Gaps = 18/250 (7%)

Query: 44  FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQM---AKEVFD 100
             SV++GC  +   N    VH  I  K +E    + A L+   +K   + M    + VF 
Sbjct: 42  LVSVLHGCTHI---NQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKL-DVPMDPYPRLVFQ 97

Query: 101 TVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE 160
            V+  +  +W A+I G A+ G   ++  ++  M    + P S TF  LL ACS    V  
Sbjct: 98  QVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNL 157

Query: 161 GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
           GR+              L     ++D+  + G +   + +   M ++ DV+ W +L+ A 
Sbjct: 158 GRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEM-LDRDVISWTSLIVA- 215

Query: 221 RTFKRLELGEVAIVNISRLMGGDYVLLSNM---YCYLKRWDTAENVREIMKKKGVRKSQG 277
             + ++   E A      L   D V  + M   Y    R   A  V E M+  GV+  + 
Sbjct: 216 --YAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDE- 272

Query: 278 KSWLELAGVI 287
              + L GVI
Sbjct: 273 ---VTLVGVI 279


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 187/414 (45%), Positives = 259/414 (62%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K + SWN+MI G+ +N   + A+  F +M+   V P+  T +S +  CA+LGAL+  
Sbjct: 374 MPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLG 433

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H +I E+ +E N  +  ALIDMY+KCG I  A+ +F+T+   +V  WNAMI+G  +H
Sbjct: 434 KWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLH 493

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  A+A  ++  M   ++LP S TFL +L ACSH GLVEEG K F  M   Y+I P +EH
Sbjct: 494 GQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEH 553

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEP-DVVVWRALLSACRTFKRLELGEVAIVNISRL 239
              MVDLLGRAG ++EA+ LI+          VW ALL AC   K  +L ++A   +  L
Sbjct: 554 CTCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQKLFEL 613

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVLLSN++   K++  A  VR+  K + + K+ G + +E+    H F AGDR+
Sbjct: 614 DPENSGYYVLLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRA 673

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+++AI   L  L  +    G+ P TE  L DV EEEKE  +  HSEKLA+A+G+L T 
Sbjct: 674 HPQSEAIYSYLEKLTAKMIEAGYRPETEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTE 733

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PGTEIRI KNLR+C DCH+  K IS++ +R+I+VRD  RFH F  G+CSCGDYW
Sbjct: 734 PGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 114/218 (52%), Gaps = 2/218 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M   D+V++N++I G+  N     ++  F E+++  + P+  T  ++I   +  G    A
Sbjct: 273 MEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLA 332

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++     N  +S A+  ++ +   ++ A++ FDT+    +  WNAMISG A +
Sbjct: 333 QCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQN 392

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL   A A+F +M   NV P+ IT    L+AC+  G +  G K+   + +   ++P +  
Sbjct: 393 GLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLG-KWLHRIITEEDLEPNVYV 451

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
             A++D+  + G I EA  +  +M  + +VV W A+++
Sbjct: 452 MTALIDMYAKCGSISEARRIFNTMDNK-NVVSWNAMIA 488



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 133/315 (42%), Gaps = 52/315 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           +P  D V WN+++ G   +    EA+  F  M+    V PD  T ASV+   A +  +  
Sbjct: 175 VPSPDTVLWNTLLAGLSGS----EAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTM 230

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              VH+   +  +  +  +   LI +YSKCG ++ A+ +FD +++ D+  +NA+ISG ++
Sbjct: 231 GRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSV 290

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACS-------------------------- 153
           +G+   +  +FT++    + P+S T + L+   S                          
Sbjct: 291 NGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPV 350

Query: 154 -------HCGL--VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
                  HC L  +E  RK FD M  +      +E + AM+    + G  E A  L   M
Sbjct: 351 STAITTLHCRLNDMESARKAFDTMPEK-----TMESWNAMISGYAQNGLTEMAVALFEQM 405

Query: 205 ---TMEPDVVVWRALLSACRTFKRLELGE--VAIVNISRLMGGDYVL--LSNMYCYLKRW 257
               + P+ +   + LSAC     L LG+    I+    L    YV+  L +MY      
Sbjct: 406 VKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSI 465

Query: 258 DTAENVREIMKKKGV 272
             A  +   M  K V
Sbjct: 466 SEARRIFNTMDNKNV 480



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 32/223 (14%)

Query: 15  GFVRNARFDEALR--FFREMLSSKVE-----PDKFTFASVIYGCARLGAL---------- 57
           GF R  RF   LR    R + S +       PD F+FA   +    L AL          
Sbjct: 77  GFPRPDRF---LRNALLRSLPSLRPRLLFPCPDSFSFA---FAATSLAALCSRGGGAASS 130

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
           + A  +H L +      +  +++AL  +Y    ++  A++VFDTV   D  +WN +++G+
Sbjct: 131 SAARALHALAVAAGYAADTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGL 190

Query: 118 AIHGLAADASAIFTKMEM-FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
           +     ++A   F +M    +V PD+ T   +L A +    V  GR    H  +      
Sbjct: 191 S----GSEAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTMGRCV--HSFAEKCGLA 244

Query: 177 QLEH-YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
           + EH    ++ L  + G +E A  L   M  +PD+V + AL+S
Sbjct: 245 EHEHVLTGLISLYSKCGDVESARCLF-DMMEKPDLVAYNALIS 286


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 178/409 (43%), Positives = 259/409 (63%), Gaps = 4/409 (0%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           VV +N+MI G+ R  R +EAL  FREM    ++P++ T  SV+  CA LG+L+   W+H 
Sbjct: 197 VVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHE 256

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
              +        ++ ALIDM++KCG +  A  +F+ ++  D   W+AMI   A HG A +
Sbjct: 257 YAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAEN 316

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           +  +F +M   NV PD ITFLGLL ACSH GLVEEGR+YF  M   + I P ++HYG+MV
Sbjct: 317 SMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMV 376

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMGG 242
           DLLGRAGH+E+AY  I  + + P  ++WR LL+AC +   LEL E     I+ +    GG
Sbjct: 377 DLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERILELDDSHGG 436

Query: 243 DYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQA 302
           DYV+LSN+Y   K+W+  +++R++MK +   K  G S +E+  V+H+F +GD        
Sbjct: 437 DYVILSNLYARNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTK 496

Query: 303 IDKILGSLIQRTKSEGFLPATELVL-MDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
           + + L  +++  K  G++P T +V+  D+ ++EKE  L +HSEKLA+A+G+L T PGT I
Sbjct: 497 LHRALDEMVKELKLAGYVPDTSMVVHADMGDQEKEITLRYHSEKLAIAFGLLNTPPGTTI 556

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           R+ KNLR+C DCHS  K+IS +  R +++RD  RFH FE G CSC D+W
Sbjct: 557 RVVKNLRVCRDCHSAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCRDFW 605



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 116/219 (52%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M + D+V +NS+  G+ R+    E    F E+L   + PD +TF S++  CA   AL   
Sbjct: 91  MSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAVAKALEEG 150

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L ++  ++ N  +   LI+MY++C  +  A+ VFD +    V  +NAMI+G A  
Sbjct: 151 RQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARR 210

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A ++F +M+  N+ P+ IT L +L++C+  G ++ G K+      ++     ++ 
Sbjct: 211 NRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLG-KWIHEYAKKHGFCKYVKV 269

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++D+  + G +++A  +  +M  + D   W A++ A
Sbjct: 270 NTALIDMFAKCGSLDDAVSIFENMRYK-DTQAWSAMIVA 307



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 33/169 (19%)

Query: 95  AKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
           A+ +FD +   D+ ++N++  G +      +   +F ++   ++LPD+ TF  LL AC+ 
Sbjct: 84  ARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAV 143

Query: 155 CGLVEEGRKY----------------------------FDHMRSRYS--IQPQLEHYGAM 184
              +EEGR+                              D  R  +   ++P +  Y AM
Sbjct: 144 AKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAM 203

Query: 185 VDLLGRAGHIEEAYGLITSM---TMEPDVVVWRALLSACRTFKRLELGE 230
           +    R     EA  L   M    ++P+ +   ++LS+C     L+LG+
Sbjct: 204 ITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGK 252



 Score = 46.6 bits (109), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 26/124 (20%), Positives = 58/124 (46%), Gaps = 10/124 (8%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH---- 59
           KD  +W++MI  +  + + + ++  F  M S  V+PD+ TF  ++  C+  G +      
Sbjct: 296 KDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREY 355

Query: 60  -AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS-VWNAMISGV 117
            ++ VH   I   I+       +++D+  + G ++ A E  D +  +    +W  +++  
Sbjct: 356 FSWMVHEFGIVPSIK----HYGSMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAAC 411

Query: 118 AIHG 121
           + H 
Sbjct: 412 SSHN 415


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 186/409 (45%), Positives = 255/409 (62%), Gaps = 4/409 (0%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           VV++N+MI G+ R +R +EAL  FRE+ +  ++P   T  SV+  CA LGAL+   W+H 
Sbjct: 187 VVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHE 246

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
            + +        +  ALIDMY+KCG +  A  VF+ +   D   W+AMI   AIHG    
Sbjct: 247 YVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLK 306

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           A ++F +M      PD ITFLGLL ACSH GLVEEG +YF  MR +Y + P ++HYG MV
Sbjct: 307 AVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMV 366

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---MGG 242
           DLLGRAG +EEAY  I  + + P  ++WR LLSAC +   +ELG+  I  I  L    GG
Sbjct: 367 DLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGG 426

Query: 243 DYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQA 302
           DY++LSN+     RW+    VR++M ++GV K  G S +E+  V+H+F +GD  H  +  
Sbjct: 427 DYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVHSVSTK 486

Query: 303 IDKILGSLIQRTKSEGFLPATELVL-MDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
           + + L  L++  K  G++P T LV   D+ +EEKE  L +HSEKLA+ +G+L T PGT I
Sbjct: 487 LHQALDELVKELKLVGYVPNTSLVFHADMEDEEKEVTLRYHSEKLAITFGLLNTPPGTTI 546

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           R+ KNLR+C DCHS  K+IS +  R II+RD  RFH F+ G CSC DYW
Sbjct: 547 RVVKNLRVCGDCHSAAKLISLIFDRQIILRDVQRFHHFKDGKCSCEDYW 595



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 116/219 (52%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  D+V +N+M  G+ R      A   F ++L S + PD +TF S++  CA   AL   
Sbjct: 81  IPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEG 140

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L I+  +  N  +   LI+MY+ C ++  A+ VFD +    V  +NAMI+G A  
Sbjct: 141 RQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARG 200

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A ++F +++  N+ P  +T L +L++C+  G ++ G+   ++++ +      ++ 
Sbjct: 201 SRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVK-KNGFNRFVKV 259

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++D+  + G +++A  +  +M +  D   W A++ A
Sbjct: 260 DTALIDMYAKCGSLDDAVCVFENMAVR-DTQAWSAMIMA 297



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 95/235 (40%), Gaps = 42/235 (17%)

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           +Q A  +FD + + D+ ++N M  G A       A  +FT++    + PD  TF  LL A
Sbjct: 71  MQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKA 130

Query: 152 CSHCGLVEEGRKY----------------------------FDHMRSRYSI--QPQLEHY 181
           C+ C  +EEGR+                              D  R  +    +P +  Y
Sbjct: 131 CASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTY 190

Query: 182 GAMVDLLGRAGHIEEAYGL---ITSMTMEPDVVVWRALLSACRTFKRLELGE-----VAI 233
            AM+    R     EA  L   + +  ++P  V   ++LS+C     L+LG+     V  
Sbjct: 191 NAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKK 250

Query: 234 VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIH 288
              +R +  D  L+ +MY      D A  V E M    VR +Q  S + +A  IH
Sbjct: 251 NGFNRFVKVDTALI-DMYAKCGSLDDAVCVFENM---AVRDTQAWSAMIMAYAIH 301



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/123 (21%), Positives = 58/123 (47%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D  +W++MI  +  +    +A+  F+EM  +  EPD+ TF  ++Y C+  G +   
Sbjct: 283 MAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEG 342

Query: 61  Y-WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE-VFDTVQRNDVSVWNAMISGVA 118
           + + + +  +  +         ++D+  + G+++ A E +     R    +W  ++S   
Sbjct: 343 FEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACG 402

Query: 119 IHG 121
            HG
Sbjct: 403 SHG 405


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 176/412 (42%), Positives = 257/412 (62%), Gaps = 3/412 (0%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P+K VV+WN+MI G+ +N   + A+  F+EM+ ++  P+  T  +++  CA+LG+L+   
Sbjct: 372 PEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGK 431

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           WVH+LI  + +E N  +S AL+DMY+KCG I  A ++FD++   +   WN MI G  +HG
Sbjct: 432 WVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHG 491

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              +A  ++ +M      P ++TFL +L ACSH GLV EG + F +M ++Y I+P +EHY
Sbjct: 492 YGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHY 551

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
             MVD+LGR+G +E+A   I  M +EP   VW  LL AC   K  ++  +A   +  L  
Sbjct: 552 ACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDP 611

Query: 242 GD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
           G    YVLLSN+Y   + +  A ++R+++KK+ + KS G + +E+ G  H F +GDRSH 
Sbjct: 612 GSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHS 671

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
            A  I   L  L  + +  G+   T   L DV EEEKE  +  HSEKLA+A+G++ T PG
Sbjct: 672 HATDIYAKLEKLTGKMREMGYQAETVPALHDVEEEEKELAVNVHSEKLAIAFGLITTEPG 731

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            EIRI KNLR+C DCH+  K IS++  RVI+VRD  RFH F+ G+CSCGDYW
Sbjct: 732 NEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 783



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 113/213 (53%), Gaps = 2/213 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D++++N+MI GF  N   + +++ FRE+L S       T   +I   +  G L+ A  +H
Sbjct: 274 DLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIH 333

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
              ++  I LN  +S A   +Y+K  +I +A+ +FD      V  WNAMISG   +G   
Sbjct: 334 GFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTE 393

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
            A ++F +M      P+++T   +L+AC+  G +  G K+  H+    +++P +    A+
Sbjct: 394 TAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFG-KWVHHLIKSENLEPNIYVSTAL 452

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           VD+  + G+I EA+ L  SM+ E + V W  ++
Sbjct: 453 VDMYAKCGNISEAWQLFDSMS-EKNTVTWNTMI 484



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 112/263 (42%), Gaps = 33/263 (12%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D V WN+MI G V+N  FD++++ FREM++  V  D  T  +V+   A L  L   
Sbjct: 169 MPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVG 228

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +  L ++        +   LI +YSKCG +  A+ +F  + R D+  +NAMISG   +
Sbjct: 229 MGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTAN 288

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLT----------ACS-HCGLVEEG-------- 161
           G    +  +F ++        S T +GL+           ACS H   V+ G        
Sbjct: 289 GGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVS 348

Query: 162 ---------RKYFDHMRSRYSIQPQ--LEHYGAMVDLLGRAGHIEEAYGLITSMT---ME 207
                        D  R  +   P+  +  + AM+    + G  E A  L   M      
Sbjct: 349 TAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFT 408

Query: 208 PDVVVWRALLSACRTFKRLELGE 230
           P+ V    +LSAC     L  G+
Sbjct: 409 PNAVTITTILSACAQLGSLSFGK 431



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 101/231 (43%), Gaps = 28/231 (12%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           +P  D+  +N ++ GF  N     ++  +  +  ++ + PD FT+A  +  C+      H
Sbjct: 70  VPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSND---KH 126

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H   I      N  + +AL+D+Y K  ++  A++VFD +   D  +WN MI+G+  
Sbjct: 127 LMLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVK 186

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACS-----------HCGLVEEGRKYFDHM 168
           +    D+  +F +M    V  DS T   +L A +            C  ++ G  + D++
Sbjct: 187 NCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYV 246

Query: 169 RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            +             ++ L  + G +  A  L   +   PD++ + A++S 
Sbjct: 247 LT------------GLISLYSKCGDVNTARLLFRRIN-RPDLIAYNAMISG 284



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 77/152 (50%), Gaps = 4/152 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +K+ V+WN+MI G+  +    EAL+ + EML     P   TF SV+Y C+  G +   
Sbjct: 472 MSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEG 531

Query: 61  YWV-HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             + HN++ + +IE      A ++D+  + G+++ A E    +      +VW  ++    
Sbjct: 532 EEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACM 591

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150
           IH    D + + ++  +F + P S+ +  LL+
Sbjct: 592 IHK-DTDIARLASE-RLFELDPGSVGYYVLLS 621


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 184/408 (45%), Positives = 260/408 (63%), Gaps = 5/408 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDV+SWN++IGG+     + EAL  F+EML S   P++ T  S++  CA LGA++   W+
Sbjct: 299 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWI 358

Query: 64  HNLIIE--KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           H  I +  K +     L  +LIDMY+KCG I+ A++VFD++    +S WNAMI G A+HG
Sbjct: 359 HVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHG 418

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
            A  A  IF++M    + PD ITF+GLL+ACSH G+++ GR  F  M   Y I P+LEHY
Sbjct: 419 RANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHY 478

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL-- 239
           G M+DLLG +G  +EA  +I SM M+PD V+W +LL AC+    +ELGE    N+ ++  
Sbjct: 479 GCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEP 538

Query: 240 -MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
              G YVLLSN+Y    RW+     R ++  KG++K  G S +E+  V+H+F  GD+ HP
Sbjct: 539 KNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHP 598

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
             + I  +L  +    +  GF+P T  VL ++ EE KEG L HHSEKLA+A+G++ T PG
Sbjct: 599 RNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPG 658

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSC 406
           T++ I KNLR+C +CH   K+IS++ +R II RDR RFH F  G+CSC
Sbjct: 659 TKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFXDGVCSC 706



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 133/293 (45%), Gaps = 49/293 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KDVVSWN++I G+     + EAL  F+EM+ + V+PD+ T  +V+  CA+  ++   
Sbjct: 195 IPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELG 254

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ I +     N  +  ALID+Y KCG+++ A  +F+ +   DV  WN +I G    
Sbjct: 255 RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHM 314

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSH-------------------------- 154
            L  +A  +F +M      P+ +T L +L AC+H                          
Sbjct: 315 NLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSS 374

Query: 155 -----------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
                      CG +E  ++ FD M +R      L  + AM+      G    A+ + + 
Sbjct: 375 LRTSLIDMYAKCGDIEAAQQVFDSMLNR-----SLSSWNAMIFGFAMHGRANPAFDIFSR 429

Query: 204 MT---MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCY 253
           M    +EPD + +  LLSAC     L+LG     +I R M  DY +   +  Y
Sbjct: 430 MRKDGIEPDDITFVGLLSACSHSGMLDLGR----HIFRSMTEDYKITPKLEHY 478



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 113/246 (45%), Gaps = 33/246 (13%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + +++ WN+M  G   ++    AL  +  M+S  + P+ +TF  ++  CA+  A      
Sbjct: 65  EPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQ 124

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT--------------------- 101
           +H  +++   +L+  +  +LI MY K G+ + A++VFD                      
Sbjct: 125 IHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGY 184

Query: 102 ----------VQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
                     +   DV  WNA+ISG A  G   +A  +F +M   NV PD  T + +L+A
Sbjct: 185 IXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSA 244

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           C+    +E GR+    +   +     L+   A++DL  + G +E A GL   ++ + DV+
Sbjct: 245 CAQSASIELGRQVHSWI-DDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYK-DVI 302

Query: 212 VWRALL 217
            W  L+
Sbjct: 303 SWNTLI 308



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++ + SWN+MI GF  + R + A   F  M    +EPD  TF  ++  C+  G L+  
Sbjct: 399 MLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLG 458

Query: 61  YWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN-DVSVWNAMISGVA 118
             +   + E  KI         +ID+    G  + A+E+ ++++ + D  +W +++    
Sbjct: 459 RHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACK 518

Query: 119 IHG 121
           +HG
Sbjct: 519 MHG 521



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 64/163 (39%), Gaps = 41/163 (25%)

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           +  A  VFD++Q  ++ +WN M  G A+      A  ++  M    ++P+S TF  LL A
Sbjct: 53  LTYAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKA 112

Query: 152 CS--------------------------HCGLV---------EEGRKYFDHMRSRYSIQP 176
           C+                          H  L+         E+ RK FD    R  +  
Sbjct: 113 CAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVS- 171

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               Y A++      G+I  A  +   + ++ DVV W AL+S 
Sbjct: 172 ----YTALIKGYASNGYIXSAQKMFDEIPVK-DVVSWNALISG 209


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 182/411 (44%), Positives = 255/411 (62%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K + SWN+MI G+ +N   ++A+  F+EM   +V P+  T  S++  CA+LGAL+   W
Sbjct: 371 EKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKW 430

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH+LI  +  E N  +S ALIDMY+KCG I  A+ +F  +   +   WNAMISG  +HG 
Sbjct: 431 VHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGY 490

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F +M    V P  +TFL +L ACSH GLV EG + F  M   +  +P  EHY 
Sbjct: 491 GHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYA 550

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            MVDLLGRAG++++A   I  M +EP   VW ALL AC   K   L  +A   +  +   
Sbjct: 551 CMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQ 610

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             G YVLLSN+Y   + +  A +VR ++K++ + K+ G + +E+A  +H F +GD+SHP+
Sbjct: 611 NVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQ 670

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           A AI  +L  L  + +  GF   T   L DV EEEKE  +  HSEKLA+A+G++ + PGT
Sbjct: 671 ATAIYAMLEKLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSEPGT 730

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           EIRI KNLR+C DCH+  K IS++  RVI+VRD  RFH F+ G+CSCGDYW
Sbjct: 731 EIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 781



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 114/217 (52%), Gaps = 2/217 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
             D+VS+N+MI G+  N   + ++R F+E+L S  + +  +   +I      G L+    
Sbjct: 270 QPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRC 329

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H    +  +  N  +S AL  +YS+  +I+ A+ +FD      ++ WNAMISG A +GL
Sbjct: 330 IHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGL 389

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
              A ++F +M+   V P+ +T   +L+AC+  G +  G K+   + +R S +  +    
Sbjct: 390 TEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLG-KWVHDLINRESFESNIFVST 448

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A++D+  + G I EA  L  SM  E + V W A++S 
Sbjct: 449 ALIDMYAKCGSITEAQRLF-SMMPEKNAVTWNAMISG 484



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 116/268 (43%), Gaps = 43/268 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D V WN+M+ G V+N+ FDEA+  F +M+   +  D  T A+V+ G A L  L   
Sbjct: 167 MLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALG 226

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +  L ++     +  +   L  +YSKCG+I+ A+ +F  + + D+  +NAMISG   +
Sbjct: 227 MGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCN 286

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGL-----------LTACSH--------------- 154
                +  +F ++ +     +S + +GL           LT C H               
Sbjct: 287 NETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVS 346

Query: 155 ---------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
                       +E  R  FD      S +  L  + AM+    + G  E+A  L   M 
Sbjct: 347 TALTTVYSRLNEIESARLLFDE-----SSEKSLASWNAMISGYAQNGLTEKAISLFQEMQ 401

Query: 206 ---MEPDVVVWRALLSACRTFKRLELGE 230
              + P+ V   ++LSAC     L LG+
Sbjct: 402 KCEVRPNPVTVTSILSACAQLGALSLGK 429



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 20/160 (12%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K+ V+WN+MI G+  +    EAL  F EML S+V P   TF SV+Y C+  G +   
Sbjct: 470 MPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREG 529

Query: 61  -----YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDV----SVWN 111
                  VH+   E   E      A ++D+  + G +  A    D +++  V     VW 
Sbjct: 530 DEIFRSMVHDHGFEPLPE----HYACMVDLLGRAGNLDKA---LDFIRKMPVEPGPPVWG 582

Query: 112 AMISGVAIHGLAADAS-AIFTKMEMFNVLPDSITFLGLLT 150
           A++    IH    DA+ A     ++F + P ++ +  LL+
Sbjct: 583 ALLGACMIH---KDANLARLASDKLFELDPQNVGYYVLLS 619



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 114/268 (42%), Gaps = 19/268 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           +P+ D+  +N +I  F  N     A+  +  +  S+ +EPD FT+A VI G + LG    
Sbjct: 68  IPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLL 127

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
            +      I      +  + +A++  Y K  ++  A++VFD +   D  +WN M+SG+  
Sbjct: 128 LHAHS---IVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVK 184

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +    +A  IF  M    +  DS T   +L   +    +  G      +  +        
Sbjct: 185 NSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMG-IQCLAMKVGFHSHAY 243

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL----------SACRTFKRLEL- 228
               +  L  + G IE A  L+     +PD+V + A++          S+ R FK L + 
Sbjct: 244 VITGLACLYSKCGEIETAR-LLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVS 302

Query: 229 GEVAIVNISRLMGGDYVLLSNMYCYLKR 256
           GE   VN S ++G   V     + +L R
Sbjct: 303 GEK--VNSSSIVGLIPVFFPFGHLHLTR 328


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 184/409 (44%), Positives = 261/409 (63%), Gaps = 4/409 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           MP ++VVSWN+MI G+ +N ++ +A+  FR+M     + P+  T  SV+  CA LGAL+ 
Sbjct: 250 MPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDL 309

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             W+H  I   KIE+   L  AL DMY+KCG +  AK VF  +   DV  W+ +I G+A+
Sbjct: 310 GKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAM 369

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G A +A   F +M    + P+ I+F+GLLTAC+H GLV++G +YFD M   Y I P++E
Sbjct: 370 YGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIE 429

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HYG +VDLL RAG +++A  LI SM M+P+V+VW ALL  CR +K  E GE  +  I  L
Sbjct: 430 HYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILEL 489

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G  V L+N+Y  + R D A + R  M+     K+ G SW+E+   +++F  GD S
Sbjct: 490 DSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSS 549

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP++  I  ++  L  + K  G+ P T+LV+ ++ EEEKE  L  HSEKLALA+G++ TS
Sbjct: 550 HPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTS 609

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCS 405
            GT IRI KNLR+C+DCH  IK+IS+++ R I+VRDR RFH F+ G CS
Sbjct: 610 EGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCS 658



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 113/232 (48%), Gaps = 15/232 (6%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFRE--MLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++ ++N+++  F ++  +   + +F    +L +   PD++TF SV+  CA L  +     
Sbjct: 89  NIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQK 148

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  + +   E N  +  +L+D+Y K G   +A+++FD +   DV  WN +ISG    G+
Sbjct: 149 VHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGM 208

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
              A  +F  M   N+    +++  +++  +  G +EE R+ F++M  R  +      + 
Sbjct: 209 VDKARMVFDGMMEKNL----VSWSTMISGYARVGNLEEARQLFENMPMRNVVS-----WN 259

Query: 183 AMVDLLGRAGHIEEAYGLITSMTME----PDVVVWRALLSACRTFKRLELGE 230
           AM+    +     +A  L   M  E    P+ V   ++LSAC     L+LG+
Sbjct: 260 AMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGK 311


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 180/413 (43%), Positives = 266/413 (64%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M   +++ WN+MI G+  N   +EA++ FREM++  +  D  T  S +   A++G+L  A
Sbjct: 247 MEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELA 306

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+   I + +   +  ++  LIDMY+KCG I +A+ VFD V   DV +W+ MI G  +H
Sbjct: 307 RWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLH 366

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  ++ +M+   V P+  TF+GLLTAC + GLV+EG + F H+   + I+P  +H
Sbjct: 367 GHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELF-HLMPDHGIEPHHQH 425

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  +VDLLGRAG++ +AY  I SM ++P V VW ALLSAC+  +++ LGE+A   +  + 
Sbjct: 426 YSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILD 485

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YV LSN+Y     W    NVR +M +KG+ K  G S +E+ G +  F+ GDRSH
Sbjct: 486 PYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSH 545

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+++ I + L  L +R K+ G++P  E VL D++ EE E  L HHSE+LA+AYGI+ T+P
Sbjct: 546 PKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAP 605

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT +RI+KNLR C +CHS IK+IS+L+ R II+RD  RFH F+ G+CSCGD+W
Sbjct: 606 GTTLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 658



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 111/217 (51%), Gaps = 2/217 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + D+ VVSW S+I G+V+N    EAL  F+EM    V+PD     SV+     +  L   
Sbjct: 146 LHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQG 205

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L+ +  +E    +  +L  MY+K G +++A+  F+ +++ ++ +WNAMISG A +
Sbjct: 206 KSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANN 265

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M   N+  DSIT    + A +  G +E  R + D   S+   +     
Sbjct: 266 GYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELAR-WLDGYISKSEYRDDTFV 324

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              ++D+  + G I  A  +   +  + DVV+W  ++
Sbjct: 325 NTGLIDMYAKCGSIYLARCVFDRVA-DKDVVLWSVMI 360



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 109/219 (49%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + + D++ WN++I G+ +    D  +R + +M  S+V P+ FTF  V+  C         
Sbjct: 45  VSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIG 104

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H    +     N  +  +L+ MY+K G+I  A+ VFD +    V  W ++ISG   +
Sbjct: 105 KQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQN 164

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M   NV PD I  + ++TA ++   + +G K    + ++  ++ + + 
Sbjct: 165 GDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQG-KSIHGLVTKLGLEFEPDI 223

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             ++  +  + G +E A      M  +P++++W A++S 
Sbjct: 224 VISLTTMYAKRGLVEVARFFFNRME-KPNLILWNAMISG 261



 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 4/131 (3%)

Query: 90  GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
           G +  A + F  V   D+ +WNA+I G     +      ++  M++  V P+  TFL +L
Sbjct: 33  GDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVL 92

Query: 150 TACSHCGLVEEGRKYFDHMRS-RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
            AC   G   EG     H ++ +Y     +    ++V +  + G I  A  ++     + 
Sbjct: 93  KACG--GTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYAR-IVFDKLHDR 149

Query: 209 DVVVWRALLSA 219
            VV W +++S 
Sbjct: 150 TVVSWTSIISG 160


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 180/413 (43%), Positives = 266/413 (64%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M   +++ WN+MI G+  N   +EA++ FREM++  +  D  T  S +   A++G+L  A
Sbjct: 262 MEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELA 321

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+   I + +   +  ++  LIDMY+KCG I +A+ VFD V   DV +W+ MI G  +H
Sbjct: 322 RWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLH 381

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  ++ +M+   V P+  TF+GLLTAC + GLV+EG + F H+   + I+P  +H
Sbjct: 382 GHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELF-HLMPDHGIEPHHQH 440

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  +VDLLGRAG++ +AY  I SM ++P V VW ALLSAC+  +++ LGE+A   +  + 
Sbjct: 441 YSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILD 500

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YV LSN+Y     W    NVR +M +KG+ K  G S +E+ G +  F+ GDRSH
Sbjct: 501 PYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSH 560

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+++ I + L  L +R K+ G++P  E VL D++ EE E  L HHSE+LA+AYGI+ T+P
Sbjct: 561 PKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAP 620

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT +RI+KNLR C +CHS IK+IS+L+ R II+RD  RFH F+ G+CSCGD+W
Sbjct: 621 GTTLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 673



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 110/215 (51%), Gaps = 2/215 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+ VVSW S+I G+V+N    EAL  F+EM    V+PD     SV+     +  L     
Sbjct: 163 DRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKS 222

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H L+ +  +E    +  +L  MY+K G +++A+  F+ +++ ++ +WNAMISG A +G 
Sbjct: 223 IHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGY 282

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F +M   N+  DSIT    + A +  G +E  R + D   S+   +       
Sbjct: 283 GEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELAR-WLDGYISKSEYRDDTFVNT 341

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
            ++D+  + G I  A  +   +  + DVV+W  ++
Sbjct: 342 GLIDMYAKCGSIYLARCVFDRVA-DKDVVLWSVMI 375



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 109/219 (49%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + + D++ WN++I G+ +    D  +R + +M  S+V P+ FTF  V+  C         
Sbjct: 60  VSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIG 119

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H    +     N  +  +L+ MY+K G+I  A+ VFD +    V  W ++ISG   +
Sbjct: 120 KQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQN 179

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M   NV PD I  + ++TA ++   + +G K    + ++  ++ + + 
Sbjct: 180 GDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQG-KSIHGLVTKLGLEFEPDI 238

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             ++  +  + G +E A      M  +P++++W A++S 
Sbjct: 239 VISLTTMYAKRGLVEVARFFFNRME-KPNLILWNAMISG 276



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 4/131 (3%)

Query: 90  GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
           G +  A + F  V   D+ +WNA+I G     +      ++  M++  V P+  TFL +L
Sbjct: 48  GDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVL 107

Query: 150 TACSHCGLVEEGRKYFDHMRS-RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
            AC   G   EG     H ++ +Y     +    ++V +  + G I  A  ++     + 
Sbjct: 108 KACG--GTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYAR-IVFDKLHDR 164

Query: 209 DVVVWRALLSA 219
            VV W +++S 
Sbjct: 165 TVVSWTSIISG 175


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 177/413 (42%), Positives = 264/413 (63%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DV+++NSMI G++ + R  +AL+ F +M    +  D FT  S++  CA LGAL H 
Sbjct: 330 MGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHG 389

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I ++ +E +  L  AL+DMY KCG++  A  VF  +   DV  W AMI+G+A +
Sbjct: 390 RALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFN 449

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G+  DA   F +M+     P S+T++ +LTACSH  L++EGR +F+ MRS + + PQ+EH
Sbjct: 450 GMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEH 509

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG M+DLL R+G ++EA  L+ +M M+P+ V+W ++LSACR  K ++L   A  ++ +L 
Sbjct: 510 YGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVHKNIDLARHAAEHLLKLA 569

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             +   YV L N+Y   ++W  A+ VR +M+++GV+K+ G S + +AG +H+F A D+SH
Sbjct: 570 PEEDAVYVQLYNIYIDSRQWADAKRVRMLMEERGVKKTAGYSSITVAGQVHKFVANDQSH 629

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    I  ++  +  R KS G+ P T  + +DV EEEKE  L  HSEK+A+A+G++   P
Sbjct: 630 PWTLEIMAMMEEIACRLKSVGYSPVTSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPP 689

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              I I KNLR+C DCHS IK++S+L  R IIVRDR RFH F  G CSC D+W
Sbjct: 690 SLPIHIVKNLRVCEDCHSAIKLVSQLWNREIIVRDRSRFHHFRDGACSCNDFW 742



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 118/249 (47%), Gaps = 34/249 (13%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P+++VVSW S+I G+ R  R  +A+  F  MLS  V PD+      +  C++L  L+   
Sbjct: 198 PERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGR 257

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN---------------- 105
            +H L+ +K+I +   L  ALIDMY+KCG I  A+ VFD V R                 
Sbjct: 258 LLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKL 317

Query: 106 ----------------DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
                           DV  +N+MI+G    G   DA  +F +M    +  D+ T + LL
Sbjct: 318 GHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLL 377

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
           TAC+  G +  GR     +  R  ++  +    A++D+  + G ++EA  +   M  E D
Sbjct: 378 TACASLGALPHGRALHASIEQRI-VEEDVYLGTALLDMYMKCGRVDEATAVFHRMG-ERD 435

Query: 210 VVVWRALLS 218
           V  W A+++
Sbjct: 436 VHTWTAMIA 444



 Score = 42.4 bits (98), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 53/253 (20%), Positives = 91/253 (35%), Gaps = 79/253 (31%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P    +  N +I  +      D+A R F E+ +     D   +A+VI G  R G L+ A
Sbjct: 135 LPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAK----DAVVWATVIGGLVRWGLLDEA 190

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                L+++                                 +RN VS W ++I+G +  
Sbjct: 191 ---RRLLVQAP-------------------------------ERNVVS-WTSLIAGYSRA 215

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACS--------------------------- 153
           G  ADA   F  M    V PD +  +G L+ACS                           
Sbjct: 216 GRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLV 275

Query: 154 --------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
                    CG + + +  FD +      +P    + A++D   + GH++ A  L   M 
Sbjct: 276 VALIDMYAKCGDIAQAQAVFDAVGRGQKPEP----WNAIIDGYCKLGHVDVARSLFDQMG 331

Query: 206 MEPDVVVWRALLS 218
              DV+ + ++++
Sbjct: 332 AR-DVITFNSMIT 343


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 176/413 (42%), Positives = 260/413 (62%), Gaps = 10/413 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + ++D +SWNS+I G V+N  FDE LRFFR+ML +K++P  ++F+S++  CA L  L+  
Sbjct: 300 LTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLG 359

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I     + N  ++++L+DMY+KCG I+ AK++FD ++  D+  W AMI G A+H
Sbjct: 360 KQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALH 419

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A DA  +F +ME   +         +LTACSH GLV+E  KYF+ M   + I P +EH
Sbjct: 420 GQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEH 472

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y A+ DLLGRAG +EEAY  I  M + P   +W  LLSACR  K +++ E     I+ + 
Sbjct: 473 YAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVD 532

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y+LL+N+Y   +RW  A   R  M++ G+RK+   SW+E+   ++ F AGD SH
Sbjct: 533 PNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESH 592

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + I + +  L++  + EG++P T  V  DV EE+K+  +  HSE+LA+ +GI+ T  
Sbjct: 593 PCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPA 652

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR++KNLR+C DCH+  K IS+++ R I+VRD  RFH F+ G CSCGDYW
Sbjct: 653 GMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 705



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 120/220 (54%), Gaps = 2/220 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KD+VSWN++I G  RN  ++E LR  REM  + ++PD FT +SV+   A    ++  
Sbjct: 199 MPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRG 258

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   I + ++ +  ++++LIDMY+KC ++  +  VF  +   D   WN++I+G   +
Sbjct: 259 KEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQN 318

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +    F +M M  + P S +F  ++ AC+H   +  G++   ++ +R      +  
Sbjct: 319 GLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYI-TRNGFDENIFI 377

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
             ++VD+  + G+I  A  +   M +  D+V W A++  C
Sbjct: 378 ASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGC 416



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 107/246 (43%), Gaps = 34/246 (13%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           ++W S+I  +  +    ++L  F  ML+S + PD   F SV+  CA L  LN    +H  
Sbjct: 72  LAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGY 131

Query: 67  IIEKKIELNFILSAALIDMYSK------CGKIQM-AKEVFDTVQRNDVSV---------- 109
           II   ++ +     AL++MYSK       G+ ++ A EVFD +     SV          
Sbjct: 132 IIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDS 191

Query: 110 ---------------WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
                          WN +I+G A +GL  +   +  +M   N+ PDS T   +L   + 
Sbjct: 192 VRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAE 251

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
              +  G++       R  +   +    +++D+  +   + ++  + T +T E D + W 
Sbjct: 252 NVDISRGKE-IHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLT-ERDGISWN 309

Query: 215 ALLSAC 220
           ++++ C
Sbjct: 310 SIIAGC 315


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 189/420 (45%), Positives = 255/420 (60%), Gaps = 10/420 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KD+V WN+M+ G+ ++ R  EALR FR+ML S VEPD+ +    +   A+LG     
Sbjct: 214 LPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESG 273

Query: 61  YWVHNLIIE----KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN---DVSVWNAM 113
            W+H+ +       ++ LN  +  AL+DMY KCG ++ A  VF  +      DV  WNAM
Sbjct: 274 RWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAM 333

Query: 114 ISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
           I+G A+HG + +A   F ++    + P  ITF+G+L ACSH GLV+EGR  F  M   Y 
Sbjct: 334 INGYAMHGRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYG 393

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE-VA 232
           I P++EHYG MVDLLGRAG +EEA+ L+ SM  +PD  +W +LL ACR  K L LG+ VA
Sbjct: 394 IVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGACRLHKNLALGQRVA 453

Query: 233 --IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQF 290
             +V       G YVLLSNMY    +W     VR +M+  GV+K  G S +E+   + +F
Sbjct: 454 DYLVGNGLANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCSAVEVGRRVVEF 513

Query: 291 KAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAY 350
            AGDRSHP +  I   L  +    ++ G +P TELVL D+ +  KE  L  HSEKLALA+
Sbjct: 514 VAGDRSHPRSAEIYAKLEEVNSIARARGHVPHTELVLHDLDDAAKERALAVHSEKLALAF 573

Query: 351 GILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G++ T P T I+I KNLR C DCH+ +K++S    R I+ RDR RFH F  G CSCGDYW
Sbjct: 574 GLISTPPRTGIKIVKNLRACADCHAVLKLVSEATGRKIVFRDRNRFHHFVDGSCSCGDYW 633



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 105/253 (41%), Gaps = 36/253 (14%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK--VEPDKFTFASVIY--GCARLGAL 57
           PD   V + S I           AL    EML S+  + P   T ++ +   GC  +G  
Sbjct: 83  PDPTAVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLLPTAHTLSASLPACGCLAVGRA 142

Query: 58  NHAYWVH---------------------------NLIIEKKIELNFILSAALIDMYSKCG 90
            H Y V                             L    + + + +   A++  Y+K G
Sbjct: 143 LHGYAVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMG 202

Query: 91  KIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150
           ++  A+ +FD + R D+  WNAM+ G   HG  ++A  +F +M    V PD ++ +  L+
Sbjct: 203 QLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALS 262

Query: 151 ACSHCGLVEEGR---KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM--T 205
           A +  G  E GR    +  +   R  ++       A+VD+  + G +EEA  +   +   
Sbjct: 263 AVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGG 322

Query: 206 MEPDVVVWRALLS 218
            + DVV W A+++
Sbjct: 323 GDRDVVAWNAMIN 335


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 177/413 (42%), Positives = 256/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K+VVSW +M+ GF RN   ++AL  F +ML   V P+ FT  S +  CA++G L   
Sbjct: 307 MPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAG 366

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I +  + L   L  AL+DMY+KCG I+ A EVF   ++  +  W  MI G AIH
Sbjct: 367 LRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIH 426

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G +  A A F +M    + PD + FL LLTAC H G V+ G  +FD MR  Y I+P ++H
Sbjct: 427 GHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKH 486

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  +VD+LGR+G ++EA   I  M M PD V+W AL  ACR  K+ ++ + A+  + +L 
Sbjct: 487 YTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLE 546

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G+Y+ LSN Y  L +W+ AE VR +M+ +GV K+ G S +E+ G +H+F +GD  H
Sbjct: 547 PTHTGNYIFLSNAYAALGQWEDAERVRVLMQNRGVHKNSGWSCIEVEGQVHRFVSGDHDH 606

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            +++AI   L  ++     +G++P TE VL ++ +EEKE  L  H EKLALA+ ++ TSP
Sbjct: 607 KDSKAICLKLEEIMAGAVKQGYIPGTEWVLHNMEQEEKEDVLGSHGEKLALAFALICTSP 666

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KNL++C DCHS +K  S++ +R I++RD  RFH F+ G CSC D+W
Sbjct: 667 GMTIRIVKNLQVCGDCHSLMKYASKISQREIMLRDMKRFHHFKDGSCSCRDHW 719



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 111/234 (47%), Gaps = 17/234 (7%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K++ ++N++I G   N+ F  A+  FR ML S ++PD+ T+  V+   A L +      +
Sbjct: 142 KNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAI 201

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD-TVQRNDVS----VWNAMISGVA 118
           H +I+   IEL+  +  +L+DMY K  K+  A +VFD + +R D      +WN +I G  
Sbjct: 202 HCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCC 261

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
             G    A  +F  M       +++++  L+   +  G ++   + FD M  +  +    
Sbjct: 262 KAGSMKKAVKLFKAMPK----KENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVS--- 314

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELG 229
             +  MVD   R G  E+A  + + M  E   P+     + LSAC     LE G
Sbjct: 315 --WTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAG 366



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 123/284 (43%), Gaps = 56/284 (19%)

Query: 11  SMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFAS-------VIYGCARLGALNHAYWV 63
           S++  +V+  +   A + F E       P++F   S       +I GC + G++  A  +
Sbjct: 219 SLVDMYVKVEKLGSAFKVFDE------SPERFDSGSSALLWNVLIKGCCKAGSMKKAVKL 272

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
              + +K+     +  + LID ++K G +  A E+FD +   +V  W  M+ G + +G +
Sbjct: 273 FKAMPKKE----NVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDS 328

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A ++F+KM    V P++ T +  L+AC+  G +E G +   +++    +        A
Sbjct: 329 EKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDN-GLHLTEALGTA 387

Query: 184 MVDLLGRAGHIEEA----------------------------------YGLITSMTMEPD 209
           +VD+  + G+IE A                                  +  +    ++PD
Sbjct: 388 LVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPD 447

Query: 210 VVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCY 253
            VV+ ALL+AC    ++++G    +N    M  DY +  +M  Y
Sbjct: 448 EVVFLALLTACMHSGQVDIG----LNFFDSMRLDYCIEPSMKHY 487


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 185/409 (45%), Positives = 248/409 (60%), Gaps = 3/409 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +VVSW S++   V+N R  EA+  FR M S  VEP+  T   V+   A + AL H    H
Sbjct: 253 NVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAH 312

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
              + K    +  + +AL+DMY+KCGK + A+ +FD +   +V  WNAMI G A+HG AA
Sbjct: 313 CFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAA 372

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           +A  +F  M+     PD +TF  +L ACS  GL EEGR+YF+ M+  + I P++EHY  M
Sbjct: 373 NAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACM 432

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---MG 241
           V LLGR+G ++EAY LI  M  EPD  +W +LL +CR +  + L EVA   + +L     
Sbjct: 433 VTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPGNA 492

Query: 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
           G+YVLLSN+Y   K WD    VR+ MK  G++K +G SW+E+   +H   AGD SHP   
Sbjct: 493 GNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSHPMMT 552

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
           AI + L  L       GF P+ + VL DV E+EK+  L  HSEKLA+A G++ T PGT +
Sbjct: 553 AITEKLNQLTIEMNRLGFAPSRDFVLHDVEEQEKDNILAVHSEKLAVALGLISTRPGTPL 612

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           R+ KNLRIC DCH  +K IS   +R I VRD  RFH F+ G CSCGDYW
Sbjct: 613 RVIKNLRICGDCHEAMKFISSFEQREISVRDTNRFHHFKDGKCSCGDYW 661



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 80/175 (45%), Gaps = 1/175 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + +V++WN ++ G  R+ R  +A+     M S    PD    +  +     +  ++    
Sbjct: 115 EPNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQ 174

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  +++    L+  +  ALIDMY KCG+      VF      DV+  NA+++G++ +  
Sbjct: 175 VHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQ 234

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
            ++A  +F +     V  + +++  ++  C   G   E    F  M+S   ++P 
Sbjct: 235 VSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQS-IGVEPN 288



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++VVSWN+MIGG+  +     A++ F  M   K +PD  TF  V+  C++ G     
Sbjct: 350 MPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEG 409

Query: 61  YWVHNLIIE-KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
               N + +   I       A ++ +  + GK+  A ++ + +    D  +W +++    
Sbjct: 410 RRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCR 469

Query: 119 IHG 121
           ++G
Sbjct: 470 VYG 472



 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 8/124 (6%)

Query: 39  PDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEV 98
           PD     S +  C    A   A  +H   +   +  +  ++++L+  Y + G    A+ V
Sbjct: 18  PDPHLLPSALKSCP---AQPLARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSV 74

Query: 99  FDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLV 158
           FD +   +V  W+A+I+G +  G A  A  +  +M    V P+ IT+ GL++     GL 
Sbjct: 75  FDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVS-----GLN 129

Query: 159 EEGR 162
             GR
Sbjct: 130 RSGR 133



 Score = 45.1 bits (105), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 9/166 (5%)

Query: 35  SKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQM 94
           S +  D F  +S+++   RLGA   A  V + + EK    N +  +ALI  YS  G  + 
Sbjct: 46  SGLAEDPFVASSLLHSYIRLGATGAARSVFDRMPEK----NVVGWSALIAGYSARGDAEA 101

Query: 95  AKEVFDTVQ----RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150
           A  + + ++      +V  WN ++SG+   G A DA     +M      PD+      L+
Sbjct: 102 AWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALS 161

Query: 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196
           A      V  G++   ++  +   +       A++D+ G+ G  +E
Sbjct: 162 AVGDVKEVSVGKQVHGYV-VKAGCRLDACVVTALIDMYGKCGRADE 206


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 178/415 (42%), Positives = 265/415 (63%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNH 59
           MP KD+V+WN++I  + +N + +EAL  F E+ L   ++ ++ T  S +  CA++GAL  
Sbjct: 324 MPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALEL 383

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             W+H+ I +  I +NF +++ALI MYSKCG ++ ++EVF++V++ DV VW+AMI G+A+
Sbjct: 384 GRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAM 443

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +A  +F KM+  NV P+ +TF  +  ACSH GLV+E    F  M S Y I P+ +
Sbjct: 444 HGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEK 503

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY  +VD+LGR+G++E+A   I +M + P   VW ALL AC+    L L E+A   +  L
Sbjct: 504 HYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLEL 563

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G +VLLSN+Y  L +W+    +R+ M+  G++K  G S +E+ G+IH+F +GD +
Sbjct: 564 EPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNA 623

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEE-KEGNLYHHSEKLALAYGILKT 355
           HP ++ +   L  ++++ KS G+ P    VL  + EEE KE +L  HSEKLA+ YG++ T
Sbjct: 624 HPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLIST 683

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
                IR+ KNLR+C DCHS  K+IS+L  R IIVRDR RFH F  G CSC D+W
Sbjct: 684 EAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 125/247 (50%), Gaps = 34/247 (13%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +KDVVSWNSMI GFV+    D+AL  F++M S  V+    T   V+  CA++  L     
Sbjct: 194 EKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQ 253

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ------------------- 103
           V + I E ++ +N  L+ A++DMY+KCG I+ AK +FD ++                   
Sbjct: 254 VCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISED 313

Query: 104 ------------RNDVSVWNAMISGVAIHGLAADASAIFTKMEMF-NVLPDSITFLGLLT 150
                       + D+  WNA+IS    +G   +A  +F ++++  N+  + IT +  L+
Sbjct: 314 YEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLS 373

Query: 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
           AC+  G +E GR    +++ ++ I+       A++ +  + G +E++  +  S+    DV
Sbjct: 374 ACAQVGALELGRWIHSYIK-KHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKR-DV 431

Query: 211 VVWRALL 217
            VW A++
Sbjct: 432 FVWSAMI 438



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 3/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           +P  +  +WN++I  +        ++  F +M+S S+  P+K+TF  +I   A + +L+ 
Sbjct: 90  IPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSL 149

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H + ++  +  +  ++ +LI  Y  CG +  A +VF T++  DV  WN+MI+G   
Sbjct: 150 GQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQ 209

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            G    A  +F KME  +V    +T +G+L+AC+    +E GR+   ++     +   L 
Sbjct: 210 KGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEEN-RVNVNLT 268

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              AM+D+  + G IE+A  L  +M  E D V W  +L
Sbjct: 269 LANAMLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTML 305


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 187/413 (45%), Positives = 257/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D+VSWN+MIG  V+ + F+EA+  FREM +  +  D+ T   +   C  LGAL+ A
Sbjct: 424 MLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLA 483

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WV   I +  I ++  L  AL+DM+S+CG    A  VF  +++ DVS W A I  +A+ 
Sbjct: 484 KWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAME 543

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +M    V PD + F+ LLTACSH G V++GR+ F  M   + I+P + H
Sbjct: 544 GNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVH 603

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG MVDLLGRAG +EEA  LI SM +EP+ VVW +LL+ACR  K +EL   A   +++L 
Sbjct: 604 YGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLA 663

Query: 241 G---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G +VLLSN+Y    +W     VR  MK+KGV+K  G S +E+ G+IH+F +GD SH
Sbjct: 664 PERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESH 723

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            E   I  +L  +  R    G++P T  VL+DV E+EKE  L  HSEKLA+AYG++ T  
Sbjct: 724 AENTHIGLMLEEINCRLSEAGYVPDTTNVLLDVDEQEKEHLLSRHSEKLAMAYGLITTGQ 783

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCHS+ K++S+L  R I VRD  R+H F+ G CSC DYW
Sbjct: 784 GIPIRVVKNLRMCSDCHSFAKLVSKLYNREITVRDNNRYHFFKEGFCSCRDYW 836



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 110/223 (49%), Gaps = 10/223 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++VVSW S+I G+       EA+  F +M  + VEP+  T   VI  CA+L  L   
Sbjct: 191 MLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELG 250

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V + I E  +EL+ I+  AL+DMY KCG I  A+++FD     ++ ++N ++S    H
Sbjct: 251 KKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHH 310

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
             A+D   I  +M      PD +T L  + AC+  G +  G+         Y ++  LE 
Sbjct: 311 EWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKS-----SHAYVLRNGLEG 365

Query: 181 Y----GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +     A++D+  + G  E A  +   M     VV W +L++ 
Sbjct: 366 WDNISNAIIDMYMKCGKREAACKVFEHMP-NKTVVTWNSLIAG 407



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 105/186 (56%), Gaps = 1/186 (0%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           +N +I G+      D+A+  + +ML   + PDK+TF  ++  C+++ AL+    VH  ++
Sbjct: 98  YNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVL 157

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
           +  +E +  +S +LI  Y++CGK+ + +++FD +   +V  W ++I+G +   L+ +A +
Sbjct: 158 KMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVS 217

Query: 129 IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLL 188
           +F +M    V P+ +T + +++AC+    +E G+K   ++ S   ++       A+VD+ 
Sbjct: 218 LFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYI-SELGMELSTIMVNALVDMY 276

Query: 189 GRAGHI 194
            + G I
Sbjct: 277 MKCGDI 282



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 109/244 (44%), Gaps = 33/244 (13%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K++V +N+++  +V +    + L    EML     PDK T  S I  CA+LG L+    
Sbjct: 294 NKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKS 353

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG- 121
            H  ++   +E    +S A+IDMY KCGK + A +VF+ +    V  WN++I+G+   G 
Sbjct: 354 SHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGD 413

Query: 122 ------------------------------LAADASAIFTKMEMFNVLPDSITFLGLLTA 151
                                         +  +A  +F +M+   +  D +T +G+ +A
Sbjct: 414 MELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASA 473

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           C + G ++  +    ++  +  I   L+   A+VD+  R G    A  +   M  + DV 
Sbjct: 474 CGYLGALDLAKWVCTYIE-KNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRME-KRDVS 531

Query: 212 VWRA 215
            W A
Sbjct: 532 AWTA 535



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 68/169 (40%), Gaps = 43/169 (25%)

Query: 109 VWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS--------------- 153
           ++N +I G A  GL   A  ++ +M +  ++PD  TF  LL+ACS               
Sbjct: 97  MYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAV 156

Query: 154 --------------------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGH 193
                                CG V+ GRK FD M  R  +      + ++++       
Sbjct: 157 LKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVS-----WTSLINGYSGRDL 211

Query: 194 IEEAYGLITSM---TMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
            +EA  L   M    +EP+ V    ++SAC   K LELG+     IS L
Sbjct: 212 SKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISEL 260


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 180/413 (43%), Positives = 258/413 (62%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D+VSWN++I GFV++     A  +F+ M  S V+PD+ TF  ++  CA   AL   
Sbjct: 569 MPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEG 628

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H LI E  ++ + ++   LI MY+KCG I  A  VF  + + +V  W +MI+G A H
Sbjct: 629 RRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQH 688

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M+   V PD ITF+G L+AC+H GL++EG  +F+ M+  ++I+P++EH
Sbjct: 689 GRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKD-FNIEPRMEH 747

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG MVDL GRAG + EA   I  M ++PD  +W ALL AC+    +EL E        L 
Sbjct: 748 YGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELD 807

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D   YV+LSN+Y     W     +R++M  +GV K  G+SW+E+ G +H F + D++H
Sbjct: 808 PNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDKTH 867

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I   LG L    K  G++P T  VL DV + EKE  L HHSE+LA+AYG+LKT P
Sbjct: 868 PQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVEDSEKEHALCHHSERLAIAYGLLKTPP 927

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T I ISKNLR+C DCH+  K+IS++ +R II RD  RFH F+ G+CSCGD+W
Sbjct: 928 LTPIVISKNLRVCGDCHTATKLISKITKRQIIARDSNRFHHFKDGVCSCGDFW 980



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 128/227 (56%), Gaps = 2/227 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPDKDV SWN ++GG+V++ R++EA R   +M+   V+PDK+TF  ++  CA    ++  
Sbjct: 165 MPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKG 224

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             + +LI+    + +  +  ALI+M+ KCG +  A +VF+ + R D+  W +MI+G+A H
Sbjct: 225 GELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARH 284

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                A  +F  ME   V PD + F+ LL AC+H   +E+G++    M+    +  ++  
Sbjct: 285 RQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMK-EVGLDTEIYV 343

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
             A++ +  + G +E+A  +  ++    +VV W A+++      R+E
Sbjct: 344 GTALLSMYTKCGSMEDALEVF-NLVKGRNVVSWTAMIAGFAQHGRME 389



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 112/216 (51%), Gaps = 2/216 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++VVSW +MI GF ++ R +EA  FF +M+ S +EP++ TF S++  C+R  AL     +
Sbjct: 370 RNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQI 429

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H+ II+     +  +  AL+ MY+KCG +  A+ VF+ + + +V  WNAMI+    H   
Sbjct: 430 HDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKY 489

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A A F  +    + PDS TF  +L  C     +E G K+   +  R   +  L    A
Sbjct: 490 DNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELG-KWVQSLIIRAGFESDLHIRNA 548

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +V +    G +  A  L   M  E D+V W  +++ 
Sbjct: 549 LVSMFVNCGDLMSAMNLFNDMP-ERDLVSWNTIIAG 583



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 121/220 (55%), Gaps = 4/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P +D+++W SMI G  R+ +F +A   F+ M    V+PDK  F S++  C    AL   
Sbjct: 266 LPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQG 325

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  + E  ++    +  AL+ MY+KCG ++ A EVF+ V+  +V  W AMI+G A H
Sbjct: 326 KRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQH 385

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
           G   +A   F KM    + P+ +TF+ +L ACS    +++GR+  D  +++ Y    ++ 
Sbjct: 386 GRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVR 445

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A++ +  + G + +A  +   ++ + +VV W A+++A
Sbjct: 446 --TALLSMYAKCGSLMDARNVFERISKQ-NVVAWNAMITA 482



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 113/216 (52%), Gaps = 2/216 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++VV+WN+MI  +V++ ++D A+  F+ +L   ++PD  TF S++  C    AL    WV
Sbjct: 471 QNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWV 530

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
            +LII    E +  +  AL+ M+  CG +  A  +F+ +   D+  WN +I+G   HG  
Sbjct: 531 QSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGEN 590

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A   F  M+   V PD ITF GLL AC+    + EGR+    + +  ++   +     
Sbjct: 591 QFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRR-LHALITEAALDCDVVVGTG 649

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++ +  + G I++A+ L+     + +V  W ++++ 
Sbjct: 650 LISMYTKCGSIDDAH-LVFHNLPKKNVYSWTSMITG 684



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 110/265 (41%), Gaps = 43/265 (16%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K+    N+ +    +  +  EA+     + S  ++  + T++S++  C +   L     +
Sbjct: 67  KNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERI 126

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           HN I   KI+ +  +   LI MY+KCG    AK++FD +   DV  WN ++ G   H   
Sbjct: 127 HNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRY 186

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACS------------------------------ 153
            +A  +  +M    V PD  TF+ +L AC+                              
Sbjct: 187 EEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTAL 246

Query: 154 -----HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME- 207
                 CG V++  K F+++  R      L  + +M+  L R    ++A  L   M  E 
Sbjct: 247 INMHIKCGGVDDALKVFNNLPRR-----DLITWTSMITGLARHRQFKQACNLFQVMEEEG 301

Query: 208 --PDVVVWRALLSACRTFKRLELGE 230
             PD V + +LL AC   + LE G+
Sbjct: 302 VQPDKVAFVSLLKACNHPEALEQGK 326


>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 179/398 (44%), Positives = 257/398 (64%), Gaps = 3/398 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++++V+WNS+I G+  N R +EAL  FREM    VEPD FT  S++  CA LGAL   
Sbjct: 56  MAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALG 115

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H  +++  ++ N     AL+D+Y+KCG I+ A +VFD ++   V  W ++I G+A++
Sbjct: 116 RRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVN 175

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F ++E   ++P  ITF+G+L ACSHCG+V+EG  YF  M+  Y I P++EH
Sbjct: 176 GFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEH 235

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDLLGRAG +++A+  I +M M+P+ VVWR LL AC     L LGEVA   + +L 
Sbjct: 236 YGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLE 295

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               GDYVLLSN+Y   +RW     VR  M ++GV+K+ G S +EL   +H+F  GDRSH
Sbjct: 296 PKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSH 355

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I   L  + +  K EG++P    VL D+ EEEKE  L +HSEK+A+A+ ++ T+ 
Sbjct: 356 PQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAA 415

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIR 395
           G  IR+ KNLR+C DCH  IK+IS++  R I+VRDR R
Sbjct: 416 GIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSR 453



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 86/166 (51%), Gaps = 2/166 (1%)

Query: 52  ARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWN 111
           A+L  +     VH++ I    E    +   L+ MY+ CG  + A ++F+ +   ++  WN
Sbjct: 6   AKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWN 65

Query: 112 AMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR 171
           ++I+G A++G   +A  +F +M +  V PD  T + LL+AC+  G +  GR+   +M  +
Sbjct: 66  SVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYM-VK 124

Query: 172 YSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             +   L    A++DL  + G I +A+ +   M  E  VV W +L+
Sbjct: 125 VGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEME-EKSVVSWTSLI 169


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 180/410 (43%), Positives = 252/410 (61%), Gaps = 4/410 (0%)

Query: 5    DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
            D V+W +MI G++ N   D AL  +  M  S V+PD++TFA++I   + L AL     +H
Sbjct: 1164 DEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIH 1223

Query: 65   NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
              +++    L+  +  +L+DMY KCG +Q A  VF  +    V  WNAM+ G+A HG   
Sbjct: 1224 ANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVD 1283

Query: 125  DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
            +A  +F  M+   + PD +TF+G+L+ACSH GL  E  KYFD M   Y I P++EHY  +
Sbjct: 1284 EALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCL 1343

Query: 185  VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD- 243
            VD LGRAG I+EA  +I SM  +    ++RALL ACRT    E  +     +  L   D 
Sbjct: 1344 VDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDS 1403

Query: 244  --YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
              YVLLSN+Y   ++WD   + R +MK K V+K  G SW+++   +H F   DRSHP+A 
Sbjct: 1404 SAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQAS 1463

Query: 302  AIDKILGSLIQRTKSEG-FLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
             I + +  L++R + EG ++P T+  L+DV EEEKE  LY+HSEKLA+A+G++ T P   
Sbjct: 1464 LIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSAT 1523

Query: 361  IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IR+ KNLR+C DCHS IK IS+L +R I++RD  RFH F  G CSCGDYW
Sbjct: 1524 IRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 111/218 (50%), Gaps = 8/218 (3%)

Query: 3    DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
            D D+ SWN+++ G++++ +  +AL  F  M    +  D+ T A+ I     L  L     
Sbjct: 1061 DFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQ 1120

Query: 63   VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            +    I+     +  +S+ ++DMY KCG +  A E+F  + R D   W  MISG   +G 
Sbjct: 1121 IQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGD 1180

Query: 123  AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLEHY 181
               A +++  M +  V PD  TF  L+ A S    +E+G++ + + ++  YS    L+H+
Sbjct: 1181 EDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYS----LDHF 1236

Query: 182  --GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
               ++VD+  + G +++AY +   M +   VV W A+L
Sbjct: 1237 VGTSLVDMYCKCGSVQDAYRVFRKMDVRK-VVFWNAML 1273



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 15/226 (6%)

Query: 2    PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA--------R 53
            P+ D++SWN+MI  + +N    EA+  FR++L   ++PD+FT ASV+  C+         
Sbjct: 956  PELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFT 1015

Query: 54   LGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAM 113
            LG+  H Y +   II         +S ALID+YSK GK+  A+ +       D++ WNA+
Sbjct: 1016 LGSQVHVYAIKCGIINDS-----FVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAI 1070

Query: 114  ISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
            + G      +  A   F+ M    +  D IT    + A S C +  +  K       +  
Sbjct: 1071 MFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKA-SGCLINLKQGKQIQAYAIKLG 1129

Query: 174  IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                L     ++D+  + G +  A  L   ++  PD V W  ++S 
Sbjct: 1130 FNNDLWVSSGVLDMYIKCGDMPNALELFGEIS-RPDEVAWTTMISG 1174



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 25/226 (11%)

Query: 5    DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
            ++ +WN  +  F+   +   A+  F+ +L S +  D  T   ++        L+    +H
Sbjct: 858  NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIH 917

Query: 65   NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             L+I+        +S +L++MYSK G +  A++ F      D+  WN MIS  A + L  
Sbjct: 918  ALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEM 977

Query: 125  DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG-- 182
            +A   F  +    + PD  T   +L ACS     +EG +YF       ++  Q+  Y   
Sbjct: 978  EAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEG-EYF-------TLGSQVHVYAIK 1026

Query: 183  -----------AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
                       A++DL  + G ++EA  L+     + D+  W A++
Sbjct: 1027 CGIINDSFVSTALIDLYSKGGKMDEAEFLLHG-KYDFDLASWNAIM 1071



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 2/135 (1%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            M  + VV WN+M+ G  ++   DEAL  FR M S+ ++PDK TF  V+  C+  G  + A
Sbjct: 1261 MDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEA 1320

Query: 61   YWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
            Y   + + +   I       + L+D   + G+IQ A+ V  ++  +   S++ A++    
Sbjct: 1321 YKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACR 1380

Query: 119  IHGLAADASAIFTKM 133
              G A  A  +  K+
Sbjct: 1381 TKGDAETAKRVADKL 1395



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 5/144 (3%)

Query: 3   DKDVVSWNSMIGGFVRNARFD-----EALRFFREMLSSKVEPDKFTFASVIYGCARLGAL 57
           D+D+V+WNS++  + + A        E  R F  +        + T A ++  C   G +
Sbjct: 674 DRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFV 733

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
             +  VH   ++   EL+  +S AL+++Y K G +  A+ +FD +   D  +WN M+   
Sbjct: 734 QVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAY 793

Query: 118 AIHGLAADASAIFTKMEMFNVLPD 141
             +    +A   F+        PD
Sbjct: 794 VENSFQDEALRFFSAFHRSGFXPD 817



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 89/219 (40%), Gaps = 27/219 (12%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D V WN M+  +V N+  DEALRFF     S   PD      VI G          
Sbjct: 778 MPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGG---------- 827

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                  +   +  N    A  +  Y        A ++F   Q +++  WN  ++     
Sbjct: 828 -------VNSDVSNNRKRHAEQVKAY--------AMKMFPFDQGSNIFAWNKKLTEFLHA 872

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A   F  +    +  DS+T + +L+A      ++ G +    +  + S  P +  
Sbjct: 873 GQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQ-IHALVIKSSFAPVVPV 931

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +++++  +AG +  A     + + E D++ W  ++S+
Sbjct: 932 SNSLMNMYSKAGVVYAAEKTFIN-SPELDLISWNTMISS 969



 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 13/150 (8%)

Query: 78  LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADAS--AIFTKMEM 135
           L+  LI MYSKCG +  A++VFD     D+  WN+++   A +   AD+S   +     +
Sbjct: 648 LTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSIL---AAYAQFADSSYENVLEGFRL 704

Query: 136 FNVLPD---SITFLG---LLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLG 189
           F +L +   SIT L    LL  C   G V+       +   +   +  L   GA+V++  
Sbjct: 705 FGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYA-VKIGFELDLFVSGALVNIYC 763

Query: 190 RAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           + G + +A  L   M  E D V+W  +L A
Sbjct: 764 KYGLVGQARLLFDKMP-ERDAVLWNVMLKA 792


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 177/414 (42%), Positives = 262/414 (63%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + D DVV+W +MI G+V+N   ++A+  F+ M+S    P+ FT A+++   + + +LNH 
Sbjct: 334 LKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHG 393

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN-DVSVWNAMISGVAI 119
             +H   I     L+  +  AL  MY+K G I  A++VF+ +++N D   W +MI  +A 
Sbjct: 394 KQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQ 453

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HGL  +A  +F +M    + PD IT++G+L+AC+H GLVE+GR YFD M++ + I P L 
Sbjct: 454 HGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLS 513

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HY  MVDL GRAG ++EAY  + +M MEPDV+ W +LLS+C+ +K ++L +VA   ++ I
Sbjct: 514 HYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLI 573

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G Y  L+N+Y    +WD A  +R++MK +GV+K QG SW+++    H F   D  
Sbjct: 574 EPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGL 633

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+   I K++  + +  K  GF P TE VL D+  E K+  L +HSEKLA+A+GI+ T 
Sbjct: 634 HPQKDEIYKMMDKIWKEIKKMGFAPDTESVLHDLEVEVKDQILRYHSEKLAIAFGIISTP 693

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             T +RI KNLR+C+DCH+ IK IS+L+ R IIVRD  RFH F+ G CSC DYW
Sbjct: 694 ENTTLRIMKNLRVCNDCHNAIKFISKLVDREIIVRDATRFHHFKDGSCSCKDYW 747



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 127/268 (47%), Gaps = 40/268 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           + ++D+VSWNSMI G  ++   +EAL+FF  +L  + ++PD+F+ AS +  CA L  L+ 
Sbjct: 199 LSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSF 258

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAK----------------------- 96
              +H  I+    + +  +  ALI MY+K G +++A+                       
Sbjct: 259 GKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGY 318

Query: 97  ----------EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFL 146
                     ++F++++  DV  W AMI G   +GL  DA  +F  M      P+S T  
Sbjct: 319 VKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLA 378

Query: 147 GLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
            +L+A S    +  G++ +   +RS  ++ P + +  A+  +  +AG I  A  +   + 
Sbjct: 379 AMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGN--ALTTMYAKAGSINGARKVFNLLR 436

Query: 206 MEPDVVVWRALLSACRTFKRLELGEVAI 233
              D V W +++ A     +  LGE AI
Sbjct: 437 QNRDTVSWTSMIMA---LAQHGLGEEAI 461



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 98/178 (55%), Gaps = 8/178 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P +D VSW ++I G+ +  RF++A++ F +M+  KV P +FT  +V+  CA  G+    
Sbjct: 67  IPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIG 126

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ +++  +     ++ +L++MY+K G ++MAK VFD ++  + S WNAMIS     
Sbjct: 127 KKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMIS----- 181

Query: 121 GLAADASAIFTKMEMFNVLP--DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
            L  +   +   +  F +L   D +++  ++  C+  G   E  ++F  +    S++P
Sbjct: 182 -LHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKP 238



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 74/166 (44%), Gaps = 3/166 (1%)

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H+L  E  ++  F  +  ++  Y+K GK++ A +VFD +   D   W  +I G    G  
Sbjct: 30  HDLFNEMPVKTTFSWNT-ILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRF 88

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            DA  IF  M    VLP   T   +L +C+  G    G+K    +  +  +   +    +
Sbjct: 89  EDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFV-VKLGLHACVPVANS 147

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG 229
           ++++  + G ++ A  +   M +  +   W A++S      R++L 
Sbjct: 148 LLNMYAKTGDLKMAKVVFDRMKLR-NTSSWNAMISLHMNCGRVDLA 192


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 175/413 (42%), Positives = 266/413 (64%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D+D+V++NS+I G++   R  EAL  F +M    +  D FT  S++  CA LGAL   
Sbjct: 330 MEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQG 389

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I ++ +E++  L  AL+DMY KCG+++ A  VF  +   DV  W+AMI+G+A +
Sbjct: 390 RALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFN 449

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G+   A   F  M++    P+S+T++ +LTACSH  L++EGR YF+ MR  ++I+P +EH
Sbjct: 450 GMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEH 509

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG M+DLLGR+G ++EA  L+ +M M+P+ V+W ++LSACR  K   L   A  ++ +L 
Sbjct: 510 YGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKDANLARNAAEHLLKLE 569

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             +   YV L N+Y   ++W+ A  +R +M+++GV+K+ G S + +AG +H+F   DR+H
Sbjct: 570 PDEDAVYVQLYNIYIDSRQWEDASQIRRLMEERGVKKAAGYSSITVAGQVHKFIVCDRTH 629

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+   I  ++  + +R KS G+ P T  + +DV EEEKE  L  HSEK+A+A+G++  +P
Sbjct: 630 PQIMEITAMMEEITRRLKSVGYSPITSQITVDVDEEEKEHALLAHSEKIAIAFGLISLAP 689

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              + I KNLR+C DCHS IK+ISR+  R IIVRDR RFH F  G CSC D+W
Sbjct: 690 NLPLHIIKNLRVCEDCHSAIKLISRIWNREIIVRDRSRFHHFRDGTCSCNDFW 742



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 120/249 (48%), Gaps = 34/249 (13%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P ++V+SW  +I G+ R  R  EA+  F  MLS  +EPD+ T   ++  CA+L  L    
Sbjct: 198 PARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGR 257

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN-DVSVWNAMISGVAIH 120
            +H L+ EK + ++  L  ALIDMY+KCG I  A EVFD + R      WNAMI G    
Sbjct: 258 SLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKL 317

Query: 121 GLAADASAIFTKME-----MFNVL--------------------------PDSITFLGLL 149
           G    A  +F +ME      FN L                           D+ T + LL
Sbjct: 318 GHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLL 377

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
           TAC+  G + +GR     +  R  ++  +    A++D+  + G +EEA  +  +M++  D
Sbjct: 378 TACASLGALPQGRALHACIEQRL-VEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVR-D 435

Query: 210 VVVWRALLS 218
           V  W A+++
Sbjct: 436 VHTWSAMIA 444



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 95/254 (37%), Gaps = 51/254 (20%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCAR------L 54
           MP    +   ++   F  ++  +  L  +R M  + V  D FTF  +   CAR      L
Sbjct: 63  MPCSTFLFDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRAHVLL 122

Query: 55  GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMI 114
             + HA     ++         ++S  +I MY + G    A+  FD +   D   W  +I
Sbjct: 123 CQMLHAACFRTMLPSAVP----LVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVI 178

Query: 115 SGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI 174
           SG+A  GL  DA  +       NV    I++ GL++  S  G   E    F+ M S    
Sbjct: 179 SGLAKLGLLDDAWCLLRHSPARNV----ISWTGLISGYSRAGRAAEAVDCFNSMLSD--- 231

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIV 234
                                          +EPD V    LLSAC   K L  G     
Sbjct: 232 ------------------------------GIEPDEVTVIGLLSACAQLKDLVFGR---- 257

Query: 235 NISRLMGGDYVLLS 248
           ++ +L+G   +L+S
Sbjct: 258 SLHKLVGEKGMLMS 271


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 183/414 (44%), Positives = 267/414 (64%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           M +KDVVSWNSMI  + +N    +A   F  ML +   + ++ T ++++  CA  GAL  
Sbjct: 253 MAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRV 312

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H+ +I+     N I++ ++IDMY KCG+ +MA+  FD ++  +V  W AMI+G  +
Sbjct: 313 GMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGM 372

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG A +A  +F +M    V P+ ITF+ +L ACSH G +EEG ++F+ M   Y+++P +E
Sbjct: 373 HGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVE 432

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HYG MVDLLGRAG+I+EAY LI SM +  D V+W +LL+ACR  K +EL E++   + +L
Sbjct: 433 HYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKL 492

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVLL+N+Y    RW   E +R ++K +G+ K  G S +EL G +H F  GD+ 
Sbjct: 493 DPSNCGYYVLLANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKE 552

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+ + I K L  L  + +  G++P    VL DV EEEKE  +  HSEKLA+A+G++ + 
Sbjct: 553 HPQHEKIYKYLEELSVKLQEAGYVPNMASVLHDVDEEEKEMIVRVHSEKLAVAFGVMNSI 612

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PG+ I + KNLR+C DCH+ IK+IS+++ R IIVRD  RFH F+ GLCSCGDYW
Sbjct: 613 PGSTIHVIKNLRVCGDCHTVIKLISKIVSREIIVRDAKRFHHFKDGLCSCGDYW 666



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 137/321 (42%), Gaps = 57/321 (17%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           DV SWNS+I    R     E+LR F  M    ++P++ TF   I  C+ L  LN     H
Sbjct: 46  DVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAH 105

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
              +    E +  +S+ALIDMYSKCGK+  A+ +FD + R ++  W ++I+G   +  A 
Sbjct: 106 QQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAH 165

Query: 125 DASAIFTKM---------EMFNVLPDSITFLGLLTACSH--------------------- 154
           +A  +F +          E      DS+  + +L+ACS                      
Sbjct: 166 EALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDK 225

Query: 155 --------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAY-- 198
                         CG V   RK FD M  +  +      + +M+ +  + G   +A+  
Sbjct: 226 VMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVS-----WNSMIAVYAQNGLSTDAFEV 280

Query: 199 --GLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLS----NMYC 252
             G++ +   + + V    LL AC     L +G      + ++   + V+++    +MYC
Sbjct: 281 FHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYC 340

Query: 253 YLKRWDTAENVREIMKKKGVR 273
              + + A N  + MK+K VR
Sbjct: 341 KCGQAEMARNAFDGMKEKNVR 361



 Score = 39.7 bits (91), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 4/118 (3%)

Query: 103 QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR 162
            R DV  WN++I+ +A  G + ++   F+ M   ++ P+  TF   + +CS    +  G+
Sbjct: 43  DRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGK 102

Query: 163 KYFDHMRSR-YSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +   H ++  +  +  L    A++D+  + G +  A  L   +    ++V W +L++ 
Sbjct: 103 Q--AHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIP-RRNIVTWTSLITG 157


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 180/410 (43%), Positives = 252/410 (61%), Gaps = 4/410 (0%)

Query: 5    DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
            D V+W +MI G++ N   D AL  +  M  S V+PD++TFA++I   + L AL     +H
Sbjct: 1164 DEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIH 1223

Query: 65   NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
              +++    L+  +  +L+DMY KCG +Q A  VF  +    V  WNAM+ G+A HG   
Sbjct: 1224 ANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVD 1283

Query: 125  DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
            +A  +F  M+   + PD +TF+G+L+ACSH GL  E  KYFD M   Y I P++EHY  +
Sbjct: 1284 EALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCL 1343

Query: 185  VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD- 243
            VD LGRAG I+EA  +I SM  +    ++RALL ACRT    E  +     +  L   D 
Sbjct: 1344 VDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDS 1403

Query: 244  --YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
              YVLLSN+Y   ++WD   + R +MK K V+K  G SW+++   +H F   DRSHP+A 
Sbjct: 1404 SAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQAS 1463

Query: 302  AIDKILGSLIQRTKSEG-FLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
             I + +  L++R + EG ++P T+  L+DV EEEKE  LY+HSEKLA+A+G++ T P   
Sbjct: 1464 LIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSAT 1523

Query: 361  IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IR+ KNLR+C DCHS IK IS+L +R I++RD  RFH F  G CSCGDYW
Sbjct: 1524 IRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 111/218 (50%), Gaps = 8/218 (3%)

Query: 3    DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
            D D+ SWN+++ G++++ +  +AL  F  M    +  D+ T A+ I     L  L     
Sbjct: 1061 DFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQ 1120

Query: 63   VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            +    I+     +  +S+ ++DMY KCG +  A E+F  + R D   W  MISG   +G 
Sbjct: 1121 IQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGD 1180

Query: 123  AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLEHY 181
               A +++  M +  V PD  TF  L+ A S    +E+G++ + + ++  YS    L+H+
Sbjct: 1181 EDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYS----LDHF 1236

Query: 182  --GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
               ++VD+  + G +++AY +   M +   VV W A+L
Sbjct: 1237 VGTSLVDMYCKCGSVQDAYRVFRKMDVRK-VVFWNAML 1273



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 15/226 (6%)

Query: 2    PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA--------R 53
            P+ D++SWN+MI  + +N    EA+  FR++L   ++PD+FT ASV+  C+         
Sbjct: 956  PELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFT 1015

Query: 54   LGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAM 113
            LG+  H Y +   II         +S ALID+YSK GK+  A+ +       D++ WNA+
Sbjct: 1016 LGSQVHVYAIKCGIINDS-----FVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAI 1070

Query: 114  ISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
            + G      +  A   F+ M    +  D IT    + A S C +  +  K       +  
Sbjct: 1071 MFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKA-SGCLINLKQGKQIQAYAIKLG 1129

Query: 174  IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                L     ++D+  + G +  A  L   ++  PD V W  ++S 
Sbjct: 1130 FNNDLWVSSGVLDMYIKCGDMPNALELFGEIS-RPDEVAWTTMISG 1174



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 25/226 (11%)

Query: 5    DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
            ++ +WN  +  F+   +   A+  F+ +L S +  D  T   ++        L+    +H
Sbjct: 858  NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIH 917

Query: 65   NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             L+I+        +S +L++MYSK G +  A++ F      D+  WN MIS  A + L  
Sbjct: 918  ALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEM 977

Query: 125  DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG-- 182
            +A   F  +    + PD  T   +L ACS     +EG +YF       ++  Q+  Y   
Sbjct: 978  EAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEG-EYF-------TLGSQVHVYAIK 1026

Query: 183  -----------AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
                       A++DL  + G ++EA  L+     + D+  W A++
Sbjct: 1027 CGIINDSFVSTALIDLYSKGGKMDEAEFLLHG-KYDFDLASWNAIM 1071



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 2/135 (1%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            M  + VV WN+M+ G  ++   DEAL  FR M S+ ++PDK TF  V+  C+  G  + A
Sbjct: 1261 MDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEA 1320

Query: 61   YWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
            Y   + + +   I       + L+D   + G+IQ A+ V  ++  +   S++ A++    
Sbjct: 1321 YKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACR 1380

Query: 119  IHGLAADASAIFTKM 133
              G A  A  +  K+
Sbjct: 1381 TKGDAETAKRVADKL 1395



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 5/144 (3%)

Query: 3   DKDVVSWNSMIGGFVRNARFD-----EALRFFREMLSSKVEPDKFTFASVIYGCARLGAL 57
           D+D+V+WNS++  + + A        E  R F  +        + T A ++  C   G +
Sbjct: 674 DRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFV 733

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
             +  VH   ++   EL+  +S AL+++Y K G +  A+ +FD +   D  +WN M+   
Sbjct: 734 QVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAY 793

Query: 118 AIHGLAADASAIFTKMEMFNVLPD 141
             +    +A   F+        PD
Sbjct: 794 VENSFQDEALRFFSAFHRSGFFPD 817



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 89/219 (40%), Gaps = 27/219 (12%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D V WN M+  +V N+  DEALRFF     S   PD      VI G          
Sbjct: 778 MPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIGG---------- 827

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                  +   +  N    A  +  Y        A ++F   Q +++  WN  ++     
Sbjct: 828 -------VNSDVSNNRKRHAEQVKAY--------AMKMFPFDQGSNIFAWNKKLTEFLHA 872

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A   F  +    +  DS+T + +L+A      ++ G +    +  + S  P +  
Sbjct: 873 GQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQ-IHALVIKSSFAPVVPV 931

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +++++  +AG +  A     + + E D++ W  ++S+
Sbjct: 932 SNSLMNMYSKAGVVYAAEKTFIN-SPELDLISWNTMISS 969



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 13/150 (8%)

Query: 78  LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADAS--AIFTKMEM 135
           L+  LI MYSKCG +  A++VFD     D+  WN+++   A +   AD+S   +     +
Sbjct: 648 LTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSIL---AAYAQFADSSYENVLEGFRL 704

Query: 136 FNVLPD---SITFLG---LLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLG 189
           F +L +   SIT L    LL  C   G V+       +   +   +  L   GA+V++  
Sbjct: 705 FGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYA-VKIGFELDLFVSGALVNIYC 763

Query: 190 RAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           + G + +A  L   M  E D V+W  +L A
Sbjct: 764 KYGLVGQARLLFDKMP-ERDAVLWNVMLKA 792


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 180/417 (43%), Positives = 259/417 (62%), Gaps = 11/417 (2%)

Query: 5   DVVSWNSMIGGFVRNARFD--------EALRFFREMLSSKVEPDKFTFASVIYGCARLGA 56
           D+ SWNS++  +V N+           E L  F EM  S ++ ++ T  ++I  CA LGA
Sbjct: 174 DLASWNSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGA 233

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
           L+   W H  +++  ++LN  +  ALIDMYSKCG + +A ++FD +   D   +NAMI G
Sbjct: 234 LSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGG 293

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
            AIHG    A  +F KM +  + PD +T +  + +CSH GLVEEG   F+ M+  Y ++P
Sbjct: 294 FAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEP 353

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNI 236
           +LEHYG +VDLLGRAG + EA   + +M M+P+ V+WR+LL A R    LE+GEV + ++
Sbjct: 354 KLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHL 413

Query: 237 SRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
            +L     G+YVLLSNMY  + RWD  + VR++MK  G+ K  G S +E+ G +H+F  G
Sbjct: 414 IQLEPETSGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMG 473

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           D++HP ++ I   L  + +R    G  P T  VL D+ EEEKE  L +HSE+LA+A+ ++
Sbjct: 474 DKTHPRSKEIYLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALI 533

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            +     IRI KNLR+C DCH+  K+IS++  R IIVRDR RFH F+ G CSC DYW
Sbjct: 534 ASHHCAPIRIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/280 (20%), Positives = 117/280 (41%), Gaps = 58/280 (20%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFF---REMLSSKVEPDKFTFASVIYGCARLGAL 57
           +P+  +  +N++I     N +    + F    R +  + ++P+ FTF S+   C     L
Sbjct: 66  IPNPTIFLYNTLISSLA-NIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWL 124

Query: 58  NHAYWVHNLIIE-KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
            H   +H  +++  +   +  + AAL++ Y+KCGK+   + +F+ + + D++ WN+++S 
Sbjct: 125 RHGRALHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNSILSA 184

Query: 117 VAIHG---------LAADASAIFTKMEMFNVLPDSITFLGLLTAC--------------- 152
             +H          L+ +   +F +M+   +  + +T + L++AC               
Sbjct: 185 Y-VHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVY 243

Query: 153 --------------------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAG 192
                               S CG ++   + FD +  R ++      Y AM+      G
Sbjct: 244 VLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLC-----YNAMIGGFAIHG 298

Query: 193 HIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELG 229
           +  +A  L   MT+E   PD V     + +C     +E G
Sbjct: 299 YGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEG 338



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P +D + +N+MIGGF  +    +AL  F++M    + PD  T    +  C+ +G +   
Sbjct: 279 LPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEG 338

Query: 61  YWVHNLIIE-KKIELNFILSAALIDMYSKCGKIQMAKE-VFDTVQRNDVSVWNAMISGVA 118
             V   + E   +E        L+D+  + G+++ A+E V +   + +  +W +++    
Sbjct: 339 CDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAAR 398

Query: 119 IHG 121
           +HG
Sbjct: 399 VHG 401


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 183/411 (44%), Positives = 249/411 (60%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D D V WNSM+ G+ +N   +EAL  FR ML + V P   TF+S+I     L  L     
Sbjct: 233 DCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQ 292

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  +I  +   N  +S++LIDMY KCG + +A+ VF+ +Q  D+  W AMI G A+HG 
Sbjct: 293 LHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGP 352

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F +ME+ NV P+ ITFL +LTACSH GLV+ G KYF+ M ++Y   P LEH  
Sbjct: 353 TTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCA 412

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG- 241
           A+ D LGRAG ++EAY  I+ M ++P   VW  LL ACR  K   L E     I  L   
Sbjct: 413 ALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPK 472

Query: 242 --GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             G +V+LSNMY    RW+ A  +R+ M+ KG++K    SW+E+   +H F A D+SHP 
Sbjct: 473 SMGSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPW 532

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
              I   L    ++   +G++P  E VL D+ EE+K   L  HSEKLA+ +GI+ T PGT
Sbjct: 533 YDRIIDALNVYSEQMIRQGYVPNMEDVLQDIEEEQKREVLCGHSEKLAIVFGIISTPPGT 592

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IR+ KNLR+C DCH   K IS+++ R I+VRD  RFHRF+ G CSCGD+W
Sbjct: 593 TIRVMKNLRVCVDCHIATKFISKIVAREIVVRDVNRFHRFKDGNCSCGDFW 643



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 128/250 (51%), Gaps = 14/250 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D VSWN++I G   + R  EAL   REM      PD FT ++V+   A    +   
Sbjct: 130 MLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRG 189

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   I+   + +  + ++LIDMY+ C ++  + +VFD+    D  +WN+M++G A +
Sbjct: 190 MVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQN 249

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLE 179
           G   +A  IF +M    V P  +TF  L+ A  +  L+  G++   ++ R+R++    + 
Sbjct: 250 GSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFIS 309

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL----------SACRTFKRLELG 229
              +++D+  + G+++ A  +   +   PD+V W A++           A   F+R+ELG
Sbjct: 310 --SSLIDMYCKCGNVDIARRVFNGI-QSPDIVSWTAMIMGYALHGPTTEAFVLFERMELG 366

Query: 230 EVAIVNISRL 239
            V   +I+ L
Sbjct: 367 NVKPNHITFL 376



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 57/281 (20%)

Query: 40  DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF 99
           D+FT  +++  C +L   +H +  +    E  +E     SAA   M          ++VF
Sbjct: 83  DRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLE-----SAAYESM----------RKVF 127

Query: 100 DTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVE 159
           D +   D   WN +I G A H    +A ++  +M     +PD+ T   +L   + C  ++
Sbjct: 128 DEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIK 187

Query: 160 EG--------RKYFDH-------MRSRYSIQPQLEH---------------YGAMVDLLG 189
            G        +  FD+       +   Y+   Q+++               + +M+    
Sbjct: 188 RGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYA 247

Query: 190 RAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVL 246
           + G +EEA G+   M    + P  V + +L+ A      L LG+     + R    D + 
Sbjct: 248 QNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIF 307

Query: 247 LS----NMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLEL 283
           +S    +MYC     D A  V       G++     SW  +
Sbjct: 308 ISSSLIDMYCKCGNVDIARRVF-----NGIQSPDIVSWTAM 343


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 186/417 (44%), Positives = 254/417 (60%), Gaps = 7/417 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML--SSKVEPDKFTFASVIYGCARLGALN 58
           MP +++VSW +MI G+ ++    +AL  F EM+   S V P+  T  SV+  CA+L  L 
Sbjct: 226 MPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLE 285

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV--WNAMISG 116
               +H L     +  N  +  AL  MY+KCG +  A+  FD + RN+ ++  WN MI+ 
Sbjct: 286 RGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITA 345

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
            A +G    A + F +M    + PD ITF GLL+ CSH GLV+ G KYF+HM + YSI P
Sbjct: 346 YASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINP 405

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNI 236
           ++EHY  + DLLGRAG + EA  L+  M M     +W +LL+ACR  + LE+ E A   +
Sbjct: 406 RVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKL 465

Query: 237 SRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
             L     G+YVLLSNMY    RW   + +R I+K +G +KS G SW+E+ G  H F  G
Sbjct: 466 FVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGG 525

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           D SHP+ + I   L +L ++ K+ G+ P T  VL D+SEEEKE NL  HSEKLA+A+GIL
Sbjct: 526 DTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGIL 585

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T   T +R++KNLRIC DCH+ +  IS +  R +IVRD  RFH F+GG CSCGDYW
Sbjct: 586 NTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 642



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 10/157 (6%)

Query: 12  MIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKK 71
           M+  +  +   D ++  F  +       D FTF  V+     L ++     VH LI+   
Sbjct: 111 MVAFYASSGDIDSSVSVFNGI------GDYFTFPFVLKSSVELLSVWMGKCVHGLILRIG 164

Query: 72  IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFT 131
           ++ +  ++ +LI +Y KCG+I  A +VFD +   DVS WNA+++G    G    A AIF 
Sbjct: 165 LQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFE 224

Query: 132 KMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM 168
           +M   N+    +++  +++  S  GL ++    FD M
Sbjct: 225 RMPWRNI----VSWTTMISGYSQSGLAQQALSLFDEM 257



 Score = 42.4 bits (98), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 88/238 (36%), Gaps = 51/238 (21%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DV SWN+++ G+ ++   D AL  F  M                            
Sbjct: 195 MTIRDVSSWNALLAGYTKSGCIDAALAIFERM---------------------------- 226

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W            N +    +I  YS+ G  Q A  +FD + + D  V    ++ +++ 
Sbjct: 227 PW-----------RNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVL 275

Query: 121 GLAADASAIFTKMEMFNV-----LPDSITFLGLLTAC-SHCGLVEEGRKYFDHMRSRYSI 174
              A  S +    ++  +     L  + + L  LTA  + CG + + R  FD +      
Sbjct: 276 PACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRN--- 332

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELG 229
           +  L  +  M+      GH  +A      M    ++PD + +  LLS C     +++G
Sbjct: 333 EKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVG 390


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  368 bits (944), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 180/413 (43%), Positives = 254/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++V++W  MI G  +N   +E L+ F +M S  +EP  + FA  I  C+ LG+L++ 
Sbjct: 383 MPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNG 442

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ +I    +       ALI MYS+CG ++ A+ VF T+   D   WNAMI+ +A H
Sbjct: 443 QQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQH 502

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +M   ++LPD ITFL +LTAC+H GL++EGR YFD M +RY I P  +H
Sbjct: 503 GHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDH 562

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  ++DLL RAG   +A  +I SM  E    +W ALL+ CR    +ELG  A   +  L+
Sbjct: 563 YARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELI 622

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
            G    Y++LSNMY  L +WD    VR +M+++GV+K  G SW+E+  ++H F   D  H
Sbjct: 623 PGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVEVENMVHVFLVDDARH 682

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE QA+   L  L+   K  G++P T+ VL D+  E KE +L  HSEKLA+ YGI+K   
Sbjct: 683 PEVQAVYTYLQQLVNEMKKLGYVPDTKFVLHDMESEHKEHSLSTHSEKLAVVYGIMKLPL 742

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLRIC DCH+  K IS+++ R I+VRDR RFH F+ G CSCG+YW
Sbjct: 743 GATIRVFKNLRICGDCHNAFKYISKVVEREIVVRDRKRFHHFKNGECSCGNYW 795



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 116/252 (46%), Gaps = 41/252 (16%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA----RLGALNHAYW 62
           V+WN+MI G+VR   ++EA   FR M S  ++ D++T+ S+I  C     ++G  N    
Sbjct: 249 VAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQ 308

Query: 63  VHNLIIEKKIELN--FILSA--ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA------ 112
           VH  I+   +E +  F+LS   ALI  Y+K  ++  A+ VFD +   D+  WNA      
Sbjct: 309 VHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYV 368

Query: 113 -------------------------MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLG 147
                                    MISG+A +G   +   +F +M+   + P    F G
Sbjct: 369 NAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAG 428

Query: 148 LLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME 207
            +TACS  G ++ G++    +  R      L    A++ +  R G +E A  +  +M   
Sbjct: 429 AITACSVLGSLDNGQQIHSQV-IRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPY- 486

Query: 208 PDVVVWRALLSA 219
            D V W A+++A
Sbjct: 487 VDSVSWNAMIAA 498



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 108/275 (39%), Gaps = 53/275 (19%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG-ALNHAYW 62
           +D VS+N+MI  +        AL  F +M      PD FTF+SV+   + +     H   
Sbjct: 102 RDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSALSLIADEERHCQM 161

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQM---------AKEVFDTVQRNDVS----- 108
           +H  +I+    L   ++ AL+  Y  C    +         A++VFD   +N +      
Sbjct: 162 LHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWT 221

Query: 109 ----------------------------VWNAMISGVAIHGLAADASAIFTKMEMFNVLP 140
                                        WNAMISG    GL  +A   F +M    +  
Sbjct: 222 TMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQE 281

Query: 141 DSITFLGLLTACSHC----GLVEEGRKYFDHMRSRYSIQPQ----LEHYGAMVDLLGRAG 192
           D  T+  L++AC  C    G+   GR+   ++  R  ++P     L    A++    +  
Sbjct: 282 DEYTYTSLISACGSCNEKMGMFNCGRQVHGYIL-RTVVEPSHHFVLSVNNALITFYTKYD 340

Query: 193 HIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
            + EA  +   M +  D++ W A+LS     +R+E
Sbjct: 341 RMIEARRVFDKMPVR-DIISWNAVLSGYVNAQRIE 374



 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 10/142 (7%)

Query: 54  LGALNH-------AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRND 106
           L  LNH       A  VH  I+    + N  +   LI++Y K   I  A+++FD + + D
Sbjct: 11  LTQLNHVSTTQIIARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPD 70

Query: 107 VSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD 166
           +     ++S  +  G    A  +F    +   + D++++  ++TA SH          F 
Sbjct: 71  IVARTTLLSAYSSSGNVKLAQQLFNATPL--TIRDTVSYNAMITAYSHGNDGHAALNLFV 128

Query: 167 HMRSRYSIQPQLEHYGAMVDLL 188
            M+ RY   P    + +++  L
Sbjct: 129 QMK-RYGFLPDPFTFSSVLSAL 149


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  368 bits (944), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 178/413 (43%), Positives = 265/413 (64%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D DV+++NS+I G++   R  EAL  F +M    +  D FT   ++   A LGAL   
Sbjct: 330 MEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASASLGALPQG 389

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I ++ +E +  L  AL+DMY KCG+++ A   F  +   DV  W+AMI G+A +
Sbjct: 390 RALHACIEQRLVERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFN 449

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G+   A   F  M+      +S+T++ +LTACSH  L++EGR YFD MR  ++I+PQ+EH
Sbjct: 450 GMGKAALEHFFWMKCDGFHANSVTYIAVLTACSHSCLLDEGRLYFDEMRLLHNIRPQIEH 509

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG M+DLLGR+G ++EA  L+ +M M+P+ V+W ++LSACR  K ++L + A  ++ +L 
Sbjct: 510 YGCMIDLLGRSGLLDEAMDLVQTMPMQPNAVIWASILSACRVHKNVDLAQNAAHHLLKLE 569

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             +   YV + N+Y   ++W+ A  +R +M+K+GV+K+ G S + +AG +H+F  GDRSH
Sbjct: 570 PAEDAVYVQMYNIYIDSRQWEDASKIRRLMEKRGVKKTAGYSSIAVAGQVHKFIVGDRSH 629

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+   I  ++  + +R KS G+ P T  + +DV EEEKE  L  HSEKLA+A+G++  +P
Sbjct: 630 PQIAEIVVMMEEIGRRLKSAGYSPITSQITVDVDEEEKEQALLAHSEKLAIAFGLVSLAP 689

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              + I KNLR+C DCHS IK+ISRL  R IIVRDR RFH F GG+CSC D+W
Sbjct: 690 NLPVHIIKNLRVCEDCHSAIKLISRLWNREIIVRDRSRFHHFRGGVCSCNDFW 742



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 120/248 (48%), Gaps = 34/248 (13%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P ++VV+W  +I G+ R  R  EA+  F  MLS  + PD+ T   ++  C +L  LN   
Sbjct: 198 PVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGC 257

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR----------------- 104
            +H L+ +K++ ++  L  ALIDMY+KCG    A+EVFD + R                 
Sbjct: 258 SLHMLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKV 317

Query: 105 ---------------NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
                          +DV  +N++I+G    G   +A  +FTKM    +  D+ T +GLL
Sbjct: 318 GHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLL 377

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
           TA +  G + +GR     +  R  ++  +    A++D+  + G +EEA      M++  D
Sbjct: 378 TASASLGALPQGRALHACIEQRL-VERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVR-D 435

Query: 210 VVVWRALL 217
           V  W A++
Sbjct: 436 VHTWSAMI 443



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 106/291 (36%), Gaps = 81/291 (27%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCAR------L 54
           MP    +   ++   F  ++  D  +  +R M    V PD FTF  +   CAR      L
Sbjct: 63  MPCSTFLFDTALRACFRASSGPDRPIILYRRMHGVDVPPDAFTFHFLFKCCARGGAHVLL 122

Query: 55  GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMI 114
           G + HA     L+         ++++ +I MY++ G    A+  FD     DV  W  +I
Sbjct: 123 GRMLHAACFRTLLPSAVP----LIASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVI 178

Query: 115 SGVAIHGLAADASAIFTKMEMFNVL-------------------------------PDSI 143
           SG+A  GL  DA  +  +  + NV+                               PD +
Sbjct: 179 SGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEV 238

Query: 144 TFLGLLTACSH-----------------------------------CGLVEEGRKYFDHM 168
           T +G+L+AC                                     CG     R+ FD +
Sbjct: 239 TVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDAL 298

Query: 169 RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                 QP    + AM+D   + GH++ A  L   M  + DV+ + +L++ 
Sbjct: 299 GRGRGPQP----WNAMIDGYCKVGHVDIARSLFDQME-DHDVITFNSLITG 344


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  367 bits (943), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 186/417 (44%), Positives = 254/417 (60%), Gaps = 7/417 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML--SSKVEPDKFTFASVIYGCARLGALN 58
           MP +++VSW +MI G+ ++    +AL  F EM+   S V P+  T  SV+  CA+L  L 
Sbjct: 263 MPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLE 322

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV--WNAMISG 116
               +H L     +  N  +  AL  MY+KCG +  A+  FD + RN+ ++  WN MI+ 
Sbjct: 323 RGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITA 382

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
            A +G    A + F +M    + PD ITF GLL+ CSH GLV+ G KYF+HM + YSI P
Sbjct: 383 YASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINP 442

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNI 236
           ++EHY  + DLLGRAG + EA  L+  M M     +W +LL+ACR  + LE+ E A   +
Sbjct: 443 RVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKL 502

Query: 237 SRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
             L     G+YVLLSNMY    RW   + +R I+K +G +KS G SW+E+ G  H F  G
Sbjct: 503 FVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGG 562

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           D SHP+ + I   L +L ++ K+ G+ P T  VL D+SEEEKE NL  HSEKLA+A+GIL
Sbjct: 563 DTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGIL 622

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T   T +R++KNLRIC DCH+ +  IS +  R +IVRD  RFH F+GG CSCGDYW
Sbjct: 623 NTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 679



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 4/160 (2%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           +NSMI  + R    +  +  +  M S     D FTF  V+     L ++     VH LI+
Sbjct: 139 FNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLIL 198

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
              ++ +  ++ +LI +Y KCG+I  A +VFD +   DVS WNA+++G    G    A A
Sbjct: 199 RIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALA 258

Query: 129 IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM 168
           IF +M   N+    +++  +++  S  GL ++    FD M
Sbjct: 259 IFERMPWRNI----VSWTTMISGYSQSGLAQQALSLFDEM 294



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 2/194 (1%)

Query: 26  LRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM 85
           L+   + LS+   P   ++A V      L  L   + VH  ++ + ++   ++ + ++  
Sbjct: 55  LQNLLQPLSAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAF 114

Query: 86  YSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145
           Y+  G I  +  VF+ +      ++N+MI   A +G A    A +  M  +    D  TF
Sbjct: 115 YASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTF 174

Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
             +L +      V  G K    +  R  +Q  L    +++ L G+ G I +A  +  +MT
Sbjct: 175 PFVLKSSVELLSVWMG-KCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMT 233

Query: 206 MEPDVVVWRALLSA 219
           +  DV  W ALL+ 
Sbjct: 234 IR-DVSSWNALLAG 246



 Score = 42.0 bits (97), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 88/238 (36%), Gaps = 51/238 (21%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DV SWN+++ G+ ++   D AL  F  M                            
Sbjct: 232 MTIRDVSSWNALLAGYTKSGCIDAALAIFERMP--------------------------- 264

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W            N +    +I  YS+ G  Q A  +FD + + D  V    ++ +++ 
Sbjct: 265 -W-----------RNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVL 312

Query: 121 GLAADASAIFTKMEMFNV-----LPDSITFLGLLTAC-SHCGLVEEGRKYFDHMRSRYSI 174
              A  S +    ++  +     L  + + L  LTA  + CG + + R  FD +      
Sbjct: 313 PACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRN--- 369

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELG 229
           +  L  +  M+      GH  +A      M    ++PD + +  LLS C     +++G
Sbjct: 370 EKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVG 427


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  367 bits (943), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 179/413 (43%), Positives = 257/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D+ +W  MIG    +    E+L FF  M +  + PDK    +V+Y CA+LGA+N A
Sbjct: 212 MWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKA 271

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I      L+ IL  A+IDMY+KCG ++ A+ +FD +Q  +V  W+AMI+    H
Sbjct: 272 KAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYH 331

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F  M    +LP+ ITF+ LL ACSH GL+EEG+++F  M   Y + P ++H
Sbjct: 332 GQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKH 391

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MVDLLGRAG ++EA  +I  M +E D V+W ALL ACR  + L+L E    ++ +L 
Sbjct: 392 YTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQ 451

Query: 241 G---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    +W+     R++M K G+RK  G++W+E+   ++QF  GD++H
Sbjct: 452 SQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLRKIPGRTWIEVGEKLYQFGVGDKTH 511

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P +  I K+L  L ++ +  G+ P T  VL DV EE K+G LY HSEKLA+A+G+L    
Sbjct: 512 PRSNEIYKMLKRLGEKLEVAGYHPDTNDVLYDVDEEVKQGLLYSHSEKLAIAFGLLVLPQ 571

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI+KNLR+C DCH++ K +S + ++ IIVRD  RFH F+ G+CSC DYW
Sbjct: 572 GHPIRITKNLRVCGDCHTFCKFVSLIEQKTIIVRDAKRFHHFKEGVCSCRDYW 624



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 110/220 (50%), Gaps = 4/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +   SW+ ++GG+ +   F      FRE+L S    D ++   VI  C  L  L   
Sbjct: 111 MSKRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCG 170

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H + ++  ++    + A L+DMY++C  ++ A ++F  + + D++ W  MI  +A  
Sbjct: 171 RLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAES 230

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR-SRYSIQPQLE 179
           G+  ++   F +M    ++PD +  + ++ AC+  G + + +    ++  + YS+   L 
Sbjct: 231 GVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILG 290

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              AM+D+  + G +E A  +   M +  +V+ W A+++A
Sbjct: 291 --TAMIDMYAKCGSVESARWIFDRMQVR-NVITWSAMIAA 327


>gi|115473893|ref|NP_001060545.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|24414187|dbj|BAC22429.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113612081|dbj|BAF22459.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|125559498|gb|EAZ05034.1| hypothetical protein OsI_27217 [Oryza sativa Indica Group]
 gi|125601406|gb|EAZ40982.1| hypothetical protein OsJ_25464 [Oryza sativa Japonica Group]
          Length = 544

 Score =  367 bits (943), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 184/413 (44%), Positives = 261/413 (63%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+VSWN+M+ G   N R  EAL  FR M++    P++ T  S +  CA  GAL   
Sbjct: 132 MPVRDLVSWNAMMSGLAGNRRPVEALCLFRRMMAEGFAPNRGTVLSALAACAGAGALETG 191

Query: 61  YWVHNLIIEKKIE--LNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
            W+H  +  K++    +  L  AL+DMY+KCG +++A +VF  ++  +   WNAMI+G+A
Sbjct: 192 KWIHAFVERKRLFRWWDEFLGTALLDMYAKCGAVELALDVFTKLRSRNTCTWNAMINGLA 251

Query: 119 IHGLAADASAIFTKMEM-FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           ++G +A A  +F KME+   V+PD +TF+G+L ACSH G V+ GR++F  +  +Y I+  
Sbjct: 252 MNGYSAKALDMFRKMELDRTVVPDEVTFVGVLLACSHGGFVDVGREHFHMIEKKYGIRLI 311

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
           LEHY  MVDLL R+GH++EA+ +I  M M+PD VVWRALL  CR  K +++ E AI  + 
Sbjct: 312 LEHYACMVDLLARSGHLQEAHKIIAGMPMKPDAVVWRALLGGCRLHKDVKMAETAISEME 371

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               GD+VLLSN+Y  + RW   E+VR  M+ KG+ K  G S +E+   IH+F +GD+SH
Sbjct: 372 ATCSGDHVLLSNLYAAVGRWSGVEDVRRTMRSKGIEKIPGCSSIEINDSIHEFVSGDKSH 431

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    I   L  +  R + +G++  T  V  DV EEEKE  L HHSEKLA+A+G++   P
Sbjct: 432 PSYNDIHAKLAEISARMQQQGYVTETAEVFYDVEEEEKEQALGHHSEKLAIAFGLIGGPP 491

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IRI KNLR C DCH + K++S++    I+VRDR RFH F  G CSC D+W
Sbjct: 492 NVAIRIVKNLRFCADCHKFAKLVSQIYHWEIVVRDRARFHHFTEGACSCNDFW 544



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 98/252 (38%), Gaps = 54/252 (21%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIE 69
           N++I  +  +   D+A R F  M       D  +F S+I+  A  G +  A      + E
Sbjct: 48  NALIQAYAASGLVDDARRVFDGM----SHRDTVSFNSMIHAHAMSGDVVSA----RRLFE 99

Query: 70  KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAI 129
           +      +   +++    + G +  A+ +F+ +   D+  WNAM+SG+A +    +A  +
Sbjct: 100 RVPSPTPVTWTSMVAGLCRAGDVAAARRLFEEMPVRDLVSWNAMMSGLAGNRRPVEALCL 159

Query: 130 FTKMEMFNVLPDSIT-----------------------------------FLG--LLTAC 152
           F +M      P+  T                                   FLG  LL   
Sbjct: 160 FRRMMAEGFAPNRGTVLSALAACAGAGALETGKWIHAFVERKRLFRWWDEFLGTALLDMY 219

Query: 153 SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM----TMEP 208
           + CG VE     F  +RSR +       + AM++ L   G+  +A  +   M    T+ P
Sbjct: 220 AKCGAVELALDVFTKLRSRNTCT-----WNAMINGLAMNGYSAKALDMFRKMELDRTVVP 274

Query: 209 DVVVWRALLSAC 220
           D V +  +L AC
Sbjct: 275 DEVTFVGVLLAC 286



 Score = 45.4 bits (106), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 9/145 (6%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H L+++  ++    +  ALI  Y+  G +  A+ VFD +   D   +N+MI   A+ G 
Sbjct: 31  LHALLVKLGLQPYARVHNALIQAYAASGLVDDARRVFDGMSHRDTVSFNSMIHAHAMSGD 90

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
              A  +F ++      P  +T+  ++      G V   R+ F+ M  R      L  + 
Sbjct: 91  VVSARRLFERVPS----PTPVTWTSMVAGLCRAGDVAAARRLFEEMPVR-----DLVSWN 141

Query: 183 AMVDLLGRAGHIEEAYGLITSMTME 207
           AM+  L       EA  L   M  E
Sbjct: 142 AMMSGLAGNRRPVEALCLFRRMMAE 166


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  367 bits (943), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 182/411 (44%), Positives = 249/411 (60%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K V +WN+MI G+ ++   + A+  F+EM++++  P+  T  S++  CA+LGAL+    
Sbjct: 368 EKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKS 427

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH LI  K +E N  +S ALIDMY+KCG I  A ++FD     +   WN MI G  +HG 
Sbjct: 428 VHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGY 487

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F +M      P S+TFL +L ACSH GLV EG + F  M ++Y I+P  EHY 
Sbjct: 488 GDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYA 547

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            MVD+LGRAG +E+A   I  M +EP   VW  LL AC   K   L  VA   +  L  G
Sbjct: 548 CMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERLFELDPG 607

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           +   YVLLSN+Y   + +  A +VRE +KK+ + K+ G + +E+ G  H F  GDRSH +
Sbjct: 608 NVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCGDRSHSQ 667

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
             +I   L  L  + +  G+   T   L DV EEEKE     HSEKLA+A+G++ T PGT
Sbjct: 668 TTSIYAKLEELTGKMREMGYQSETVTALHDVEEEEKELMFNVHSEKLAIAFGLITTEPGT 727

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           EIRI KNLR+C DCH+  K IS++  RVI+VRD  RFH F+ G+CSCGDYW
Sbjct: 728 EIRIIKNLRVCLDCHAATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 778



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 112/213 (52%), Gaps = 2/213 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D+VS+N++I GF  N   + A+++FRE+L S       T   +I   +  G L+ A  + 
Sbjct: 269 DLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQ 328

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
              ++    L   +S AL  +YS+  +I +A+++FD      V+ WNAMISG A  GL  
Sbjct: 329 GFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTE 388

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
            A ++F +M      P+ +T   +L+AC+  G +  G+     ++S+ +++  +    A+
Sbjct: 389 MAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSK-NLEQNIYVSTAL 447

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           +D+  + G+I EA  L   +T E + V W  ++
Sbjct: 448 IDMYAKCGNISEASQLF-DLTSEKNTVTWNTMI 479



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 118/268 (44%), Gaps = 43/268 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPD+D V WN+MI G VRN  +D++++ F++M++  V  D  T A+V+   A +  +   
Sbjct: 164 MPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVG 223

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +  L ++     +  +   LI ++SKC  +  A+ +F  +++ D+  +NA+ISG + +
Sbjct: 224 MGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCN 283

Query: 121 GLAADASAIFTKM----------EMFNVLPDSITFLGLLTACSHCGL------------- 157
           G    A   F ++           M  ++P S  F  L  AC   G              
Sbjct: 284 GETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVS 343

Query: 158 ------------VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS-M 204
                       ++  R+ FD      S +  +  + AM+    ++G  E A  L    M
Sbjct: 344 TALTTIYSRLNEIDLARQLFDE-----SSEKTVAAWNAMISGYAQSGLTEMAISLFQEMM 398

Query: 205 TME--PDVVVWRALLSACRTFKRLELGE 230
           T E  P+ V   ++LSAC     L  G+
Sbjct: 399 TTEFTPNPVTITSILSACAQLGALSFGK 426



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 107/233 (45%), Gaps = 33/233 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCA--RLGAL 57
           +P  D+  +N +I GF  +     ++ F+  +L ++ + PD FT+A  I       LG  
Sbjct: 66  VPKPDIFLFNVLIKGFSFSPD-ASSISFYTHLLKNTTLSPDNFTYAFAISASPDDNLGMC 124

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
            HA+ V +       + N  +++AL+D+Y K  ++  A++VFD +   D  +WN MI+G+
Sbjct: 125 LHAHAVVD-----GFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGL 179

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS-----------HCGLVEEGRKYFD 166
             +    D+  +F  M    V  DS T   +L A +            C  ++ G  + D
Sbjct: 180 VRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDD 239

Query: 167 HMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++ +             ++ +  +   ++ A  L+  M  +PD+V + AL+S 
Sbjct: 240 YVLT------------GLISVFSKCEDVDTAR-LLFGMIRKPDLVSYNALISG 279


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  367 bits (943), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 183/413 (44%), Positives = 254/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++VV+WN++I G  +N   +E L  +  M  +   PDK TF SVI  C+ L  L   
Sbjct: 245 MPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQG 304

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +I+    L   + ++LI MYS+CG ++ + +VF   +  DV  W++MI+    H
Sbjct: 305 QQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFH 364

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +ME   +  + +TFL LL ACSHCGL E+G K+FD M  +Y ++P+LEH
Sbjct: 365 GRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEH 424

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MVDLLGR G +EEA  LI SM ++ DV+ W+ LLSAC+  K+ E+       + RL 
Sbjct: 425 YTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFRLD 484

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D   YVLLSN++   KRWD   +VR+ M+ + ++K  G SWLE+   IHQF  GD+SH
Sbjct: 485 PRDPVPYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQIHQFCMGDKSH 544

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P++  I   L  L    K  G++P  + VL D+  E+KE +L HHSEKLA+A+ +L T  
Sbjct: 545 PKSVEIASYLRELTSEMKKRGYVPDIDSVLHDMDVEDKEYSLVHHSEKLAIAFALLYTPV 604

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IR+ KNLR+C DCH  IK IS +  R IIVRD  RFH F+ G CSCGDYW
Sbjct: 605 GTPIRVIKNLRVCSDCHVAIKYISEISNREIIVRDSSRFHHFKNGRCSCGDYW 657



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 115/221 (52%), Gaps = 6/221 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++V +WN+M+ G ++    +E L  F  M      PD+F   SV+ GCA L AL   
Sbjct: 144 MPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAG 203

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  + +   E N ++ ++L  MY KCG +   + +   +   +V  WN +I+G A +
Sbjct: 204 RQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQN 263

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLE 179
           G   +    +  M+M    PD ITF+ ++++CS    + +G++ + + +++  S+   + 
Sbjct: 264 GYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSV- 322

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEP-DVVVWRALLSA 219
              +++ +  R G +E  Y L   +  E  DVV W ++++A
Sbjct: 323 -ISSLISMYSRCGCLE--YSLKVFLECENGDVVCWSSMIAA 360



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/218 (20%), Positives = 92/218 (42%), Gaps = 33/218 (15%)

Query: 33  LSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKI 92
            SS +  +   F+ ++  C    +L+    +H+LII      +  +S  L+++YSKCG++
Sbjct: 44  FSSHIWSEPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQL 103

Query: 93  QMA-------------------------------KEVFDTVQRNDVSVWNAMISGVAIHG 121
             A                               +++FD +   +V+ WNAM++G+    
Sbjct: 104 DTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFE 163

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              +   +F++M     LPD      +L  C+    +  GR+   ++R +   +  L   
Sbjct: 164 FNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVR-KCGFEFNLVVV 222

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            ++  +  + G + E   LI +M  + +VV W  L++ 
Sbjct: 223 SSLAHMYMKCGSLGEGERLIRAMPSQ-NVVAWNTLIAG 259


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  367 bits (943), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 180/409 (44%), Positives = 254/409 (62%), Gaps = 3/409 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +VV+W S+I    +N +  EAL  FR+M +  VEP+  T  S+I  C  + AL H   +H
Sbjct: 340 NVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIH 399

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
              + + I  +  + +ALIDMY+KCG+IQ+A+  FD +   ++  WNA++ G A+HG A 
Sbjct: 400 CFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAK 459

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           +   +F  M      PD +TF  +L+AC+  GL EEG + ++ M   + I+P++EHY  +
Sbjct: 460 ETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACL 519

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMG 241
           V LL R G +EEAY +I  M  EPD  VW ALLS+CR    L LGE+A   +  +     
Sbjct: 520 VTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNP 579

Query: 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
           G+Y+LLSN+Y     WD    +RE+MK KG+RK+ G SW+E+   +H   AGD+SHP+ +
Sbjct: 580 GNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMK 639

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
            I + L  L  + K  G+LP T  VL DV E++KE  L  HSEKLA+  G+L TSPG  +
Sbjct: 640 DILEKLDKLNMQMKKSGYLPKTNFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTSPGQPL 699

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           ++ KNLRIC DCH+ IK+ISRL  R I VRD  RFH F+ G+CSCGD+W
Sbjct: 700 QVIKNLRICDDCHAVIKVISRLEGREIYVRDTNRFHHFKDGVCSCGDFW 748



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 115/240 (47%), Gaps = 4/240 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + ++VSWN M+ GF  N  +DEA+  FR ML     PD  T + V+     L  +     
Sbjct: 202 EPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQ 261

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  +I++ +  +  + +A++DMY KCG ++    VFD V+  ++   NA ++G++ +G+
Sbjct: 262 VHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGM 321

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
              A  +F K +   +  + +T+  ++ +CS  G   E  + F  M++ Y ++P      
Sbjct: 322 VDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQA-YGVEPNAVTIP 380

Query: 183 AMVDLLGRAG---HIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           +++   G      H +E +       +  DV V  AL+       R++L       +S L
Sbjct: 381 SLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSAL 440



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 85/168 (50%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P   + S++S+I  F R+  F   L  F  +   ++ PD F   S I  CA L AL+  
Sbjct: 64  LPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPG 123

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H          + I++++L  MY KC +I  A+++FD +   DV VW+AMI+G +  
Sbjct: 124 QQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRL 183

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM 168
           GL  +A  +F +M    V P+ +++ G+L    + G  +E    F  M
Sbjct: 184 GLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMM 231


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  367 bits (942), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 186/410 (45%), Positives = 260/410 (63%), Gaps = 4/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K V+SWN MI  +V N+   EA+  + +M ++ VEPD  +  SV+     L AL+    V
Sbjct: 252 KSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRV 311

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H     KK+  N +L  ALIDMY+KCG ++ A+ VF+ +Q  DV  W ++IS     G  
Sbjct: 312 HKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQG 371

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            DA A+F +M    + PDSI F+ +L ACSH GL+++GR YF+ M +   I P+LEH+  
Sbjct: 372 RDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYYFNLM-AECGITPKLEHFAC 430

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
           +VDLLGRAG I+EAYG I  M +EPD  VW  LLSACR +  + +G +A   ++ ++   
Sbjct: 431 VVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRVYSNMNIGILAADKLLMLNPEH 490

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G YVLLSN+Y    RW     +R IM++KG++K  G S +EL   +H F AGD SHP++
Sbjct: 491 SGYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSHPQS 550

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + I + L  L+ + K  G++P T+  L DV EE+KE +L  HSEKLA+A+ I+ T PGT 
Sbjct: 551 KKIYEELDVLVGKMKELGYMPETDSALHDVEEEDKEYHLAVHSEKLAVAFAIINTKPGTP 610

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IR++KNLR+C DCH   K+IS++  R II+RD  RFH F+ G CSCGDYW
Sbjct: 611 IRVTKNLRVCGDCHVAAKLISKIAEREIIIRDTHRFHHFQEGCCSCGDYW 660



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 112/230 (48%), Gaps = 6/230 (2%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           DK+VV +N MI  +V N  + +AL  ++ M +    PD +T+  V+   +R  +L     
Sbjct: 82  DKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQ 141

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  +++  ++LN  +   LI MY KC  ++ A++V D +   DV  WN+M+S  A +G 
Sbjct: 142 IHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGR 201

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             DA  +  +ME  N+ P+  T   LL A ++     +   Y   M  + + +  +  + 
Sbjct: 202 FNDALELCREMEALNLKPNDCTMASLLPAVTNT--TSDNVLYVKEMFLKLTKKSVIS-WN 258

Query: 183 AMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELG 229
            M+ +       +EA  L + M    +EPDVV   ++L A      L LG
Sbjct: 259 VMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLG 308



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 7/132 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVVSW S+I  + +  +  +A+  F EM +S + PD   F SV+  C+  G L+  
Sbjct: 350 MQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDG 409

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
            +  NL+ E  I       A ++D+  + GKI  A      +    D  VW  ++S   +
Sbjct: 410 RYYFNLMAECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRV 469

Query: 120 HG------LAAD 125
           +       LAAD
Sbjct: 470 YSNMNIGILAAD 481



 Score = 44.7 bits (104), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 2/137 (1%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
           L+ +Y+ CG+  +A+ +FD +   +V  +N MI     + L  DA  ++  M     +PD
Sbjct: 60  LMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPD 119

Query: 142 SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
             T+  +L A S    +  G +    +  +  +   L     ++ + G+   ++EA  ++
Sbjct: 120 MYTYPCVLKASSRSDSLWVGLQIHGAVL-KIGLDLNLYVGNGLIAMYGKCKSLKEAQQVL 178

Query: 202 TSMTMEPDVVVWRALLS 218
             +    DVV W +++S
Sbjct: 179 DEIPCR-DVVSWNSMVS 194


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  367 bits (942), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 179/414 (43%), Positives = 259/414 (62%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           MP +++VSWN+++ G+V+N+  D+ALR FR M+  + V+P+  T +SV+ GC+ L AL  
Sbjct: 249 MPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGF 308

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H   ++  +  N  +  +L+ MY KCG +  A ++F  +   DV  WNAMISG A 
Sbjct: 309 GKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQ 368

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +A  +F +M+   V P+ ITF+ +LTAC H GL + G + F+ M+  Y I+P+++
Sbjct: 369 HGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVD 428

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HY  MVDLL RAG +E A  LI SM  EP    +  LL+ACR +K LE  E+A   ++  
Sbjct: 429 HYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEK 488

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YV L+N+Y    +WD    VR  MK   V K+ G SW+E+ GV+H+F++ DR 
Sbjct: 489 DPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRL 548

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+   I + LG L +R K+ G++P  + VL DV E  K   L  HSEKLA+++G++ T+
Sbjct: 549 HPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTA 608

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PG  +RI KNLR+C DCH+  K+IS++  R II+RD  RFH F GG CSCGDYW
Sbjct: 609 PGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 662



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 101/220 (45%), Gaps = 12/220 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVVSWN+M+ G  ++   +EA   F  M       +  ++ +++ G A    ++ A
Sbjct: 155 MPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVR----NSVSWNAMVSGFACSRDMSAA 210

Query: 61  -YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             W  N   EK    + +L  A++  Y   G +  A E F+ +   ++  WNA+++G   
Sbjct: 211 EEWFRN-APEKG---DAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVK 266

Query: 120 HGLAADASAIF-TKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +  A DA  +F T +   NV P++ T   +L  CS+   +  G K       +  +   L
Sbjct: 267 NSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFG-KQIHQWCMKLPLSRNL 325

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
               ++V +  + G +  A  L   M    DVV W A++S
Sbjct: 326 TVGTSLVSMYCKCGDLSSACKLFGEMHTR-DVVAWNAMIS 364



 Score = 41.6 bits (96), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 88/234 (37%), Gaps = 44/234 (18%)

Query: 31  EMLSSKVEPDKFTFASVIYGCAR-LGALNHAYWVHNLI-IEKKIELNFILSAALIDMYSK 88
           E  +S       T+  ++ G AR LG L  A  + + I     +  N +LS         
Sbjct: 87  EAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFAS---- 142

Query: 89  CGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM--------------- 133
            G    A+ +F ++   DV  WN M+SG++  G   +A A+F  M               
Sbjct: 143 -GDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGF 201

Query: 134 ----------EMFNVLP---DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                     E F   P   D++ +  +++     G V +  +YF+ M  R      L  
Sbjct: 202 ACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVR-----NLVS 256

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTME----PDVVVWRALLSACRTFKRLELGE 230
           + A+V    +  H ++A  L  +M  E    P+     ++L  C     L  G+
Sbjct: 257 WNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGK 310


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  367 bits (942), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 179/417 (42%), Positives = 253/417 (60%), Gaps = 7/417 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK--VEPDKFTFASVIYGCARLGALN 58
           + +++VV+W  MIGG  +    ++AL+ F EM+S    V P+ +T + ++  CA L A+ 
Sbjct: 474 LEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIR 533

Query: 59  HAYWVHNLII--EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
               +H  ++   +     + ++  LIDMYSKCG +  A+ VFD++ +     W +M++G
Sbjct: 534 IGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTG 593

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
             +HG  ++A  IF KM     +PD ITFL +L ACSHCG+V++G  YFD M + Y + P
Sbjct: 594 YGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTP 653

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI--- 233
           + EHY   +DLL R+G +++A+  +  M MEP  VVW ALLSACR    +EL E A+   
Sbjct: 654 RAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKL 713

Query: 234 VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
           V ++    G Y L+SN+Y    RW     +R +MKK G++K  G SW++       F  G
Sbjct: 714 VEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVG 773

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           DRSHP +  I  +L SLI R K+ G++P T   L DV EEEK   L  HSEKLALAYG+L
Sbjct: 774 DRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLL 833

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            TSPG  IRI+KNLR+C DCHS    IS+++   I+VRD  RFH F+ G CSCG YW
Sbjct: 834 TTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 890



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 123/268 (45%), Gaps = 51/268 (19%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFD-----------------------------------EA 25
           M  KDVVSWN+M+ G+ ++  F+                                   EA
Sbjct: 326 MEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEA 385

Query: 26  LRFFREMLSSKVEPDKFTFASVIYGCARLGALN-----HAYWVHNLIIEKKIEL-----N 75
           L  FR+M+ S   P+  T  SV+  CA LGA +     HAY + N ++    +      +
Sbjct: 386 LNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDED 445

Query: 76  FILSAALIDMYSKCGKIQMAKEVFDTV--QRNDVSVWNAMISGVAIHGLAADASAIFTKM 133
            ++  ALIDMYSKC   + A+ +FD +  +  +V  W  MI G A +G + DA  +F +M
Sbjct: 446 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 505

Query: 134 --EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG-AMVDLLGR 190
             E + V P++ T   +L AC+H   +  G++   ++   +  +         ++D+  +
Sbjct: 506 ISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSK 565

Query: 191 AGHIEEAYGLITSMTMEPDVVVWRALLS 218
            G ++ A  +  SM+ +   + W ++++
Sbjct: 566 CGDVDTARHVFDSMS-QKSAISWTSMMT 592



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 100/221 (45%), Gaps = 11/221 (4%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           V WN +I   ++  R D A+     ML +   PD FT   V+  C  L +       H L
Sbjct: 121 VWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGL 180

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLA 123
           I     E N  +  AL+ MYS+CG ++ A  +FD + +   +DV  WN+++S       A
Sbjct: 181 ICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNA 240

Query: 124 ADASAIFTKMEMF------NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
             A  +F+KM +       N   D I+ + +L AC     V + ++   +   R    P 
Sbjct: 241 WTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNA-IRNGTFPD 299

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
           +    A++D   + G +E A  +   M  + DVV W A+++
Sbjct: 300 VFVGNALIDAYAKCGLMENAVKVFNMMEFK-DVVSWNAMVA 339



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 116/267 (43%), Gaps = 30/267 (11%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREML------SSKVEPDKFTFASVIYGCARLGALN 58
           DV+SWNS++   V+++    AL  F +M        +    D  +  +++  C  L A+ 
Sbjct: 223 DVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVP 282

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               VH   I      +  +  ALID Y+KCG ++ A +VF+ ++  DV  WNAM++G +
Sbjct: 283 QTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYS 342

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
             G    A  +F  M   N+  D +T+  ++   S  G   E    F  M    S+ P  
Sbjct: 343 QSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSL-PNC 401

Query: 179 EHYGAMVDLLGRAGHIEE-----AYGLITSMTM--------EPDVVVWRALL---SACRT 222
               +++      G   +     AY L   +          + D++V+ AL+   S CR+
Sbjct: 402 VTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRS 461

Query: 223 FKR-------LELGEVAIVNISRLMGG 242
           FK        + L E  +V  + ++GG
Sbjct: 462 FKAARSIFDDIPLEERNVVTWTVMIGG 488



 Score = 38.1 bits (87), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 55/149 (36%), Gaps = 13/149 (8%)

Query: 78  LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFN 137
           L   ++  Y  CG    A  V + V  +    WN +I      G    A  +  +M    
Sbjct: 91  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 150

Query: 138 VLPDSITFLGLLTACSH-----CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAG 192
             PD  T   +L AC       CG    G    +   S   I        A+V +  R G
Sbjct: 151 TRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFI------CNALVAMYSRCG 204

Query: 193 HIEEAYGLITSMTME--PDVVVWRALLSA 219
            +EEA  +   +T     DV+ W +++SA
Sbjct: 205 SLEEASMIFDEITQRGIDDVISWNSIVSA 233


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  367 bits (942), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 178/413 (43%), Positives = 251/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  ++VVSWN MI G+ ++    +       M     +PD+ T  S++  C  L AL   
Sbjct: 478 MSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERG 537

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   ++  +E + +++ +LI MYSKCG++  A+ VFD +   D   WNAM++G   H
Sbjct: 538 KLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQH 597

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G+  +A  +F +M    V P+ ITF  +++AC   GLV+EGR+ F  M+  + ++P  +H
Sbjct: 598 GIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQH 657

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG MVDLLGRAG ++EA   I  M  EPD+ VW ALL AC++   ++L E A  +I RL 
Sbjct: 658 YGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLE 717

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             +   YV LSN+Y    RWD +  VR++M  KG++K +G+S +E+ G IH F A D +H
Sbjct: 718 PSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAEDCAH 777

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE  +I   L  L +  K  G+ P    VL DV E +KE  L HHSEKLA+AYG+LKT P
Sbjct: 778 PEIDSIHAELEMLTKEMKEAGYTPDMRFVLHDVDEVQKERALCHHSEKLAIAYGLLKTPP 837

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IRI KNLR+C DCH+  K IS++ +R I+ RD  RFH F+ G CSCGD+W
Sbjct: 838 GTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFKNGTCSCGDFW 890



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 120/223 (53%), Gaps = 7/223 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++VVSW ++I    ++ + +EA   + +ML + + P+  TF S++  C    ALN  
Sbjct: 240 MKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRG 299

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ I E+ +E + +++ ALI MY KC  IQ A+E FD + + DV  W+AMI+G A  
Sbjct: 300 RRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQS 359

Query: 121 GLAADAS-----AIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           G     S      +  +M    V P+ +TF+ +L ACS  G +E+GR+    + S+   +
Sbjct: 360 GYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEI-SKVGFE 418

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
                  A+ ++  + G I EA  + + M    +VV W +LL+
Sbjct: 419 SDRSLQTAIFNMYAKCGSIYEAEQVFSKME-NKNVVAWASLLT 460



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 142/319 (44%), Gaps = 52/319 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVV+W+SMI  +  N    +A   F  M  + +EP++ TF S++  C     L  A
Sbjct: 139 MTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKA 198

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H ++    +E +  ++ ALI MYSKCG+I +A E+F  ++  +V  W A+I   A H
Sbjct: 199 REIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQH 258

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTAC-------------SH------------- 154
               +A  ++ KM    + P+++TF+ LL +C             SH             
Sbjct: 259 RKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVA 318

Query: 155 ---------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGH-----IEEAYGL 200
                    C  +++ R+ FD M  R  I      + AM+    ++G+     ++E + L
Sbjct: 319 NALITMYCKCNCIQDARETFDRMSKRDVIS-----WSAMIAGYAQSGYQDKESLDEVFQL 373

Query: 201 ITSMTME---PDVVVWRALLSACRTFKRLELGEVAIVNISRL-MGGDYVLLS---NMYCY 253
           +  M  E   P+ V + ++L AC     LE G      IS++    D  L +   NMY  
Sbjct: 374 LERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAK 433

Query: 254 LKRWDTAENVREIMKKKGV 272
                 AE V   M+ K V
Sbjct: 434 CGSIYEAEQVFSKMENKNV 452



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 151/353 (42%), Gaps = 54/353 (15%)

Query: 11  SMIGGFV----RNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           S+ GG V    +  R  EA++    +    +  +  T+  +I  CA+L        VH  
Sbjct: 44  SVSGGEVWRLCKAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQ 103

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           + E  + ++  L  +LI+ YSK G +   ++VF  +   DV  W++MI+  A +   A A
Sbjct: 104 LDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKA 163

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186
              F +M+  N+ P+ ITFL +L AC++  ++E+ R+    +++   ++  +    A++ 
Sbjct: 164 FDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKAS-GMETDVAVATALIT 222

Query: 187 LLGRAGHI-------------------------------EEAYGLITSMT---MEPDVVV 212
           +  + G I                                EA+ L   M    + P+ V 
Sbjct: 223 MYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVT 282

Query: 213 WRALLSACRTFKRLELGEVAIVNIS-RLMGGDYVL---LSNMYCYLKRWDTAENVREIMK 268
           + +LL++C T + L  G     +IS R +  D V+   L  MYC       A    + M 
Sbjct: 283 FVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMS 342

Query: 269 KKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLP 321
           K+ V      SW  +     Q    D+     +++D++   L++R + EG  P
Sbjct: 343 KRDV-----ISWSAMIAGYAQSGYQDK-----ESLDEVF-QLLERMRREGVFP 384


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  367 bits (942), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 187/419 (44%), Positives = 256/419 (61%), Gaps = 15/419 (3%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK--VEPDKFTFASVIYGCARLGALN-- 58
           +++VV+W  MIGG+ +    ++AL+ F EM+S    V P+ +T + ++  CA L AL   
Sbjct: 472 ERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMG 531

Query: 59  ---HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMI 114
              HAY   +   E  +   + ++  LIDMYSKCG +  A+ VFD++ +RN+VS W +M+
Sbjct: 532 KQIHAYVTRHHEYEPSV---YFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVS-WTSMM 587

Query: 115 SGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI 174
           SG  +HG   +A  IF KM+    +PD I+FL LL ACSH G+V++G  YFD MR  Y +
Sbjct: 588 SGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDV 647

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI- 233
               EHY  ++DLL R G +++A+  I  M MEP  V+W ALLSACR    +EL E A+ 
Sbjct: 648 VASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALN 707

Query: 234 --VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFK 291
             VN+     G Y L+SN+Y   +RW     +R++MKK G++K  G SW++       F 
Sbjct: 708 KLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFF 767

Query: 292 AGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYG 351
            GDRSHP +  I  +L  LI R K  G++P T   L DV +EEK   L  HSEKLALAYG
Sbjct: 768 VGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLSEHSEKLALAYG 827

Query: 352 ILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           +L TSPG  IRI+KNLR+C DCHS    IS+++   IIVRD  RFH F+ G CSCG YW
Sbjct: 828 LLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 124/270 (45%), Gaps = 53/270 (19%)

Query: 1   MPDKDVVSWNSMIGGFVRNARF-----------------------------------DEA 25
           M  KDVVSWN+M+ G+ ++  F                                    EA
Sbjct: 320 MEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEA 379

Query: 26  LRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKI------------E 73
           L  F++M+    EP+  T  S++  CA LGAL+    +H   ++K +             
Sbjct: 380 LDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDG 439

Query: 74  LNFILSAALIDMYSKCGKIQMAKEVFDTVQR--NDVSVWNAMISGVAIHGLAADASAIFT 131
            + ++  ALIDMYSKC   + A+ +FD++ R   +V  W  MI G A +G + DA  IF+
Sbjct: 440 EDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFS 499

Query: 132 KM--EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG-AMVDLL 188
           +M  + + V P++ T   +L AC+H   +  G++   ++   +  +P +      ++D+ 
Sbjct: 500 EMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMY 559

Query: 189 GRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
            + G ++ A  +  SM    + V W +++S
Sbjct: 560 SKCGDVDTARNVFDSMPKRNE-VSWTSMMS 588



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 6/170 (3%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREML------SSKVEPDKFTFASVIYGCARLGALN 58
           DV+SWNS++   V+ +    AL  F EM       ++    D  +  +++  CA L AL 
Sbjct: 217 DVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALP 276

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H+  I      +  +  ALID Y+KCG +  A +VF+ ++  DV  WNAM++G  
Sbjct: 277 QIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYT 336

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM 168
             G    A  +F  M   N+  D IT+  ++   +  G  +E    F  M
Sbjct: 337 QSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQM 386



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 98/221 (44%), Gaps = 11/221 (4%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           V WN ++   ++    D A+     ML +  +PD FT    +  C  L +      +H L
Sbjct: 115 VWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYCCGRALHGL 174

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLA 123
           I     E N  +  AL+ MYS+CG ++ A  VFD + R   +DV  WN++++        
Sbjct: 175 ICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNP 234

Query: 124 ADASAIFTKMEMF------NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
             A  +F++M M       N   D I+ + +L AC+    + + ++   +     +    
Sbjct: 235 RTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADA 294

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
                A++D   + G + +A  +   M  + DVV W A+++
Sbjct: 295 FV-CNALIDTYAKCGSMNDAVKVFNVMEFK-DVVSWNAMVT 333



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 8/125 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++ VSW SM+ G+  + R  EAL  F +M  +   PD  +F  ++Y C+  G ++  
Sbjct: 575 MPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQG 634

Query: 61  YWVHNLIIEKKIELNFILS----AALIDMYSKCGKIQMA-KEVFDTVQRNDVSVWNAMIS 115
               +++   + + + + S    A +ID+ ++CG++  A K + +        +W A++S
Sbjct: 635 LNYFDIM---RRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLS 691

Query: 116 GVAIH 120
              +H
Sbjct: 692 ACRVH 696


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  367 bits (942), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 179/417 (42%), Positives = 253/417 (60%), Gaps = 7/417 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK--VEPDKFTFASVIYGCARLGALN 58
           + +++VV+W  MIGG  +    ++AL+ F EM+S    V P+ +T + ++  CA L A+ 
Sbjct: 481 LEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIR 540

Query: 59  HAYWVHNLII--EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
               +H  ++   +     + ++  LIDMYSKCG +  A+ VFD++ +     W +M++G
Sbjct: 541 IGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTG 600

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
             +HG  ++A  IF KM     +PD ITFL +L ACSHCG+V++G  YFD M + Y + P
Sbjct: 601 YGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTP 660

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI--- 233
           + EHY   +DLL R+G +++A+  +  M MEP  VVW ALLSACR    +EL E A+   
Sbjct: 661 RAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKL 720

Query: 234 VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
           V ++    G Y L+SN+Y    RW     +R +MKK G++K  G SW++       F  G
Sbjct: 721 VEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVG 780

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           DRSHP +  I  +L SLI R K+ G++P T   L DV EEEK   L  HSEKLALAYG+L
Sbjct: 781 DRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLL 840

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            TSPG  IRI+KNLR+C DCHS    IS+++   I+VRD  RFH F+ G CSCG YW
Sbjct: 841 TTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 897



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 123/269 (45%), Gaps = 51/269 (18%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFD-----------------------------------EA 25
           M  KDVVSWN+M+ G+ ++  F+                                   EA
Sbjct: 333 MEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEA 392

Query: 26  LRFFREMLSSKVEPDKFTFASVIYGCARLGALN-----HAYWVHNLIIEKKIEL-----N 75
           L  FR+M+ S   P+  T  SV+  CA LGA +     HAY + N ++    +      +
Sbjct: 393 LNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDED 452

Query: 76  FILSAALIDMYSKCGKIQMAKEVFDTV--QRNDVSVWNAMISGVAIHGLAADASAIFTKM 133
            ++  ALIDMYSKC   + A+ +FD +  +  +V  W  MI G A +G + DA  +F +M
Sbjct: 453 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 512

Query: 134 --EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG-AMVDLLGR 190
             E + V P++ T   +L AC+H   +  G++   ++   +  +         ++D+  +
Sbjct: 513 ISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSK 572

Query: 191 AGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            G ++ A  +  SM+ +   + W ++++ 
Sbjct: 573 CGDVDTARHVFDSMS-QKSAISWTSMMTG 600



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 11/222 (4%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           V WN +I   ++  R D A+     ML +   PD FT   V+  C  L +       H L
Sbjct: 128 VWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGL 187

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLA 123
           I     E N  +  AL+ MYS+CG ++ A  +FD + +   +DV  WN+++S       A
Sbjct: 188 ICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNA 247

Query: 124 ADASAIFTKMEMF------NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
             A  +F+KM +       N   D I+ + +L AC     V + ++   +   R    P 
Sbjct: 248 WTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNA-IRNGTFPD 306

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +    A++D   + G +E A  +   M  + DVV W A+++ 
Sbjct: 307 VFVGNALIDAYAKCGLMENAVKVFNMMEFK-DVVSWNAMVAG 347



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 116/267 (43%), Gaps = 30/267 (11%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREML------SSKVEPDKFTFASVIYGCARLGALN 58
           DV+SWNS++   V+++    AL  F +M        +    D  +  +++  C  L A+ 
Sbjct: 230 DVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVP 289

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               VH   I      +  +  ALID Y+KCG ++ A +VF+ ++  DV  WNAM++G +
Sbjct: 290 QTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYS 349

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
             G    A  +F  M   N+  D +T+  ++   S  G   E    F  M    S+ P  
Sbjct: 350 QSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSL-PNC 408

Query: 179 EHYGAMVDLLGRAGHIEE-----AYGLITSMTM--------EPDVVVWRALL---SACRT 222
               +++      G   +     AY L   +          + D++V+ AL+   S CR+
Sbjct: 409 VTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRS 468

Query: 223 FKR-------LELGEVAIVNISRLMGG 242
           FK        + L E  +V  + ++GG
Sbjct: 469 FKAARSIFDDIPLEERNVVTWTVMIGG 495



 Score = 38.5 bits (88), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 55/149 (36%), Gaps = 13/149 (8%)

Query: 78  LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFN 137
           L   ++  Y  CG    A  V + V  +    WN +I      G    A  +  +M    
Sbjct: 98  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 157

Query: 138 VLPDSITFLGLLTACSH-----CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAG 192
             PD  T   +L AC       CG    G    +   S   I        A+V +  R G
Sbjct: 158 TRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFI------CNALVAMYSRCG 211

Query: 193 HIEEAYGLITSMTME--PDVVVWRALLSA 219
            +EEA  +   +T     DV+ W +++SA
Sbjct: 212 SLEEASMIFDEITQRGIDDVISWNSIVSA 240


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  367 bits (942), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 183/410 (44%), Positives = 263/410 (64%), Gaps = 3/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD VS+++++ G+V+N + DEA R FR+M +  V+PD  T  S+I  C+ L AL H    
Sbjct: 399 KDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCG 458

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I + I     +  ALIDMY+KCG+I +++++FD +   D+  WN MI+G  IHGL 
Sbjct: 459 HGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLG 518

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A+A+F  M+     PD +TF+ L++ACSH GLV EG+++F  M  +Y I P++EHY  
Sbjct: 519 KEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIG 578

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG-- 241
           MVDLL R G ++EAY  I  M ++ DV VW ALL ACR  K ++LG+     I +L    
Sbjct: 579 MVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQLGPEG 638

Query: 242 -GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G++VLLSN++    R+D A  VR I K++G +KS G SW+E+ G +H F  GDRSH ++
Sbjct: 639 TGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLHAFIGGDRSHAQS 698

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
             I + L +++      G+   T  VL DV EEEKE  L +HSEKLA+A+G+L  S    
Sbjct: 699 SEIYQELDNILVDINKLGYRADTSFVLQDVEEEEKEKALLYHSEKLAIAFGVLTLSEDKT 758

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           I ++KNLR+C DCH+ IK ++ + +R IIVRD  RFH F+ G CSCGD+W
Sbjct: 759 IFVTKNLRVCGDCHTVIKYMTLVRKRAIIVRDANRFHHFKNGQCSCGDFW 808



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 111/221 (50%), Gaps = 7/221 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKV---EPDKFTFASVIYGCARLGAL 57
           M  ++ V+W++++GGFV   R  EA   F++ML+  +    P   + AS +  CA L  L
Sbjct: 294 MAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPT--SVASALRACANLSDL 351

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
                +H L+ +  +  +     +L+ MY+K G I  A  +FD +   D   ++A++SG 
Sbjct: 352 CLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGY 411

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
             +G A +A  +F KM+  NV PD  T + L+ ACSH   ++ G+     +  R  I  +
Sbjct: 412 VQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVR-GIASE 470

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
                A++D+  + G I+ +  +   M    D+V W  +++
Sbjct: 471 TSICNALIDMYAKCGRIDLSRQIFDVMPAR-DIVSWNTMIA 510



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 99/220 (45%), Gaps = 5/220 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P   +  +N++I  +           +         +P+ +TF  V+  C+ L  L  A
Sbjct: 89  IPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVLKACSALLDLRSA 148

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH       +  +  +S AL+D+Y+KC   + A  VF  +   DV  WNAM++G A+H
Sbjct: 149 RAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVVAWNAMLAGYALH 208

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  +D  A    M+  +  P++ T + LL   +  G + +GR    +     S+    + 
Sbjct: 209 GKYSDTIACLLLMQDDHA-PNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDG 267

Query: 181 Y---GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
                A++D+  + GH+  A  +  +M +  + V W AL+
Sbjct: 268 VLVGTALLDMYAKCGHLVYASRVFEAMAVRNE-VTWSALV 306



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 142/321 (44%), Gaps = 57/321 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALN-- 58
           MP +DVV+WN+M+ G+  + ++ + +     M      P+  T  +++   A+ GAL+  
Sbjct: 190 MPARDVVAWNAMLAGYALHGKYSDTIACLLLMQDDHA-PNASTLVALLPLLAQHGALSQG 248

Query: 59  ---HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMI 114
              HAY V    +    +   ++  AL+DMY+KCG +  A  VF+ +  RN+V+ W+A++
Sbjct: 249 RAVHAYSVRACSLHDHKD-GVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVT-WSALV 306

Query: 115 SGVAIHGLAADASAIFTKM---EMFNVLPDSIT------------FLG------------ 147
            G  + G   +A ++F  M    +  + P S+              LG            
Sbjct: 307 GGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGL 366

Query: 148 ---------LLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAY 198
                    LL+  +  GL+++    FD M  + ++      Y A+V    + G  +EA+
Sbjct: 367 HTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVS-----YSALVSGYVQNGKADEAF 421

Query: 199 GLITSM---TMEPDVVVWRALLSACRTFKRLELGEVAIVN-ISRLMGGDYVL---LSNMY 251
            +   M    ++PDV    +L+ AC     L+ G+    + I R +  +  +   L +MY
Sbjct: 422 RVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMY 481

Query: 252 CYLKRWDTAENVREIMKKKGV 272
               R D +  + ++M  + +
Sbjct: 482 AKCGRIDLSRQIFDVMPARDI 502



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+VSWN+MI G+  +    EA   F +M     EPD  TF  +I  C+  G +   
Sbjct: 497 MPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEG 556

Query: 61  Y-WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             W H +  +  I         ++D+ ++ G +  A +    +  + DV VW A++    
Sbjct: 557 KRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACR 616

Query: 119 IH 120
           +H
Sbjct: 617 VH 618



 Score = 46.2 bits (108), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 2/130 (1%)

Query: 89  CGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGL 148
           CG + +A+ +FD +    +  +NA+I   ++ G A       +        P++ TF  +
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
           L ACS    +   R    H  +R  +   L    A+VD+  +      A  +   M    
Sbjct: 136 LKACSALLDLRSARAVHCHA-ARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPAR- 193

Query: 209 DVVVWRALLS 218
           DVV W A+L+
Sbjct: 194 DVVAWNAMLA 203


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  367 bits (942), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 179/414 (43%), Positives = 259/414 (62%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           MP +++VSWN+++ G+V+N+  D+ALR FR M+  + V+P+  T +SV+ GC+ L AL  
Sbjct: 200 MPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGF 259

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H   ++  +  N  +  +L+ MY KCG +  A ++F  +   DV  WNAMISG A 
Sbjct: 260 GKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQ 319

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +A  +F +M+   V P+ ITF+ +LTAC H GL + G + F+ M+  Y I+P+++
Sbjct: 320 HGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVD 379

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HY  MVDLL RAG +E A  LI SM  EP    +  LL+ACR +K LE  E+A   ++  
Sbjct: 380 HYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEK 439

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YV L+N+Y    +WD    VR  MK   V K+ G SW+E+ GV+H+F++ DR 
Sbjct: 440 DPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRL 499

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+   I + LG L +R K+ G++P  + VL DV E  K   L  HSEKLA+++G++ T+
Sbjct: 500 HPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTA 559

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PG  +RI KNLR+C DCH+  K+IS++  R II+RD  RFH F GG CSCGDYW
Sbjct: 560 PGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 613



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 12/220 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVVSWN+M+ G  ++   +EA   F  M       +  ++ +++ G A    ++ A
Sbjct: 106 MPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVR----NSVSWNAMVSGFACSRDMSAA 161

Query: 61  -YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             W  N   EK    + +L  A++  Y   G +  A E F+ +   ++  WNA+++G   
Sbjct: 162 EEWFRN-APEKG---DAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVK 217

Query: 120 HGLAADASAIF-TKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +  A DA  +F T +   NV P++ T   +L  CS+   +  G++       +  +   L
Sbjct: 218 NSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQ-IHQWCMKLPLSRNL 276

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
               ++V +  + G +  A  L   M    DVV W A++S
Sbjct: 277 TVGTSLVSMYCKCGDLSSACKLFGEMHTR-DVVAWNAMIS 315



 Score = 41.6 bits (96), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 88/234 (37%), Gaps = 44/234 (18%)

Query: 31  EMLSSKVEPDKFTFASVIYGCAR-LGALNHAYWVHNLI-IEKKIELNFILSAALIDMYSK 88
           E  +S       T+  ++ G AR LG L  A  + + I     +  N +LS         
Sbjct: 38  EAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFAS---- 93

Query: 89  CGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM--------------- 133
            G    A+ +F ++   DV  WN M+SG++  G   +A A+F  M               
Sbjct: 94  -GDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGF 152

Query: 134 ----------EMFNVLP---DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                     E F   P   D++ +  +++     G V +  +YF+ M  R      L  
Sbjct: 153 ACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVR-----NLVS 207

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTME----PDVVVWRALLSACRTFKRLELGE 230
           + A+V    +  H ++A  L  +M  E    P+     ++L  C     L  G+
Sbjct: 208 WNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGK 261


>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Brachypodium distachyon]
          Length = 599

 Score =  367 bits (942), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 172/413 (41%), Positives = 260/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++++SWN+MI G+V+  RF +AL  F +M +  +E + F  AS +  C   G L   
Sbjct: 187 MPERNLISWNAMISGYVKAGRFLDALEVFDQMRALGIEGNGFVAASAVVACTGAGVLARG 246

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  + +  I ++  L+ A++DMY KCG ++ A  VF  +    ++ WN MI G+A+H
Sbjct: 247 REVHRWVEQSGITMDEKLATAVVDMYCKCGSVEEAWHVFKVLPTKGLTSWNCMIGGLAVH 306

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA  +F +ME  +V PD +T + +LTAC+H G+V +G  YF+++  RY I+P++EH
Sbjct: 307 GRCKDAIELFHEMEREDVAPDDVTLVNVLTACAHTGMVSDGHNYFNYIVQRYGIEPKMEH 366

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDL GRAG ++EA  +I  M MEPD+ V  AL  AC+  + L+LGE     ++ + 
Sbjct: 367 YGCMVDLFGRAGLLDEAKKVIDDMPMEPDIGVLGALFGACKIHRDLDLGEAIGWRVIELD 426

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLL+N+     +W     VR +M ++ V K  G+S +E+ G + +F+ G   H
Sbjct: 427 PQNSGRYVLLANLLASAGQWVDVAKVRRLMDERNVSKEAGRSVIEIDGEVCEFQCGSLCH 486

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            + + I   +  ++++ + EG++P T  VL D++EEEKE  L +HSEKLA+A+G+L+T P
Sbjct: 487 AQEKEIFAAVKDMMRKIRLEGYMPDTSDVLHDITEEEKEVPLQYHSEKLAIAFGLLRTRP 546

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  +RI+KNLR+C DCH   K ISR+  R I+VRDR RFH F+ G CSC DYW
Sbjct: 547 GDTVRITKNLRVCRDCHEATKFISRVFEREIVVRDRNRFHHFKDGTCSCRDYW 599



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 83/192 (43%), Gaps = 39/192 (20%)

Query: 8   SWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLI 67
           S+N+++  ++ N R D A R F    SS  + D  ++ +++ G  RLG ++ A       
Sbjct: 129 SFNALLAAYLANGRADLASRLFGS-CSSPGDLDVVSWTTMVGGLCRLGLVDDA------- 180

Query: 68  IEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADAS 127
                                       +++FD +   ++  WNAMISG    G   DA 
Sbjct: 181 ----------------------------RKLFDGMPERNLISWNAMISGYVKAGRFLDAL 212

Query: 128 AIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLEHYGAMVD 186
            +F +M    +  +       + AC+  G++  GR+    + +S  ++  +L    A+VD
Sbjct: 213 EVFDQMRALGIEGNGFVAASAVVACTGAGVLARGREVHRWVEQSGITMDEKLA--TAVVD 270

Query: 187 LLGRAGHIEEAY 198
           +  + G +EEA+
Sbjct: 271 MYCKCGSVEEAW 282


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  367 bits (941), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 183/417 (43%), Positives = 266/417 (63%), Gaps = 7/417 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS--SKVEPDKFTFASVIYGCARLGALN 58
           M  +++VSW +MI G+ +N   ++AL  F EML   S+++P+  T  SV+  CA+  AL 
Sbjct: 273 MEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALE 332

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN--DVSVWNAMISG 116
               +H+      + LN  +  AL  MY+KC  +  A+  FD + +N  ++  WN MI+ 
Sbjct: 333 RGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITA 392

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
            A HG   +A +IF  M    V PD++TF+GLL+ CSH GL++ G  +F+ M + +S++P
Sbjct: 393 YASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEP 452

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNI 236
           ++EHY  +VDLLGRAG + EA  LI+ M M+    VW ALL+ACR+ + LE+ E+A   +
Sbjct: 453 RVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRL 512

Query: 237 SRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
             L     G+YVLLSN+Y     W+  + +R ++K +G++KS G SW+E+ G  H F   
Sbjct: 513 FVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGA 572

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           D+SHP+A+ I K L +L ++ K  G++P T  VL D+SEEEKE NL  HSEKLA+A+G+L
Sbjct: 573 DKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLL 632

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T PG  +R++KNLRIC DCH+  K IS++  R IIVRD  RFH F+ G CSCGDYW
Sbjct: 633 NTRPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 689



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 7/163 (4%)

Query: 9   WNSMIGGFVRNARFDEA---LRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           +NS+I  + R+         L  +  M    +  D FT   V+  CA L  +     VH 
Sbjct: 146 YNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHG 205

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
             +   +E +F + A+LIDMY KCG I  A+++FD +   D++ WNA+I+G    G    
Sbjct: 206 QGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGV 265

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM 168
           A  +F +ME  N+    +++  +++  +  G  E+    FD M
Sbjct: 266 AEDLFERMEHRNI----VSWTAMISGYTQNGFAEQALGLFDEM 304



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 75/184 (40%), Gaps = 5/184 (2%)

Query: 39  PDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEV 98
           P   ++A +     R   +      H  I+   ++ N  L+A ++ MY+  G +  A  V
Sbjct: 75  PHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVV 134

Query: 99  FDTVQRNDVSVWNAMISGVAIHGLAADASAI---FTKMEMFNVLPDSITFLGLLTACSHC 155
           FD +      ++N++I     HG           + +M    +L D+ T   +L +C+  
Sbjct: 135 FDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADL 194

Query: 156 GLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRA 215
             V  GR        R  ++       +++D+  + G I +A  L   M +  D+  W A
Sbjct: 195 SRVCMGRCVHGQ-GLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVR-DMASWNA 252

Query: 216 LLSA 219
           L++ 
Sbjct: 253 LIAG 256


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  367 bits (941), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 184/416 (44%), Positives = 260/416 (62%), Gaps = 6/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK--VEPDKFTFASVIYGCARLGALN 58
           MP KD+ +WN +I G+ ++ R  EAL  FRE+  +K    PD+ T  S +  CA+LGA++
Sbjct: 435 MPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMD 494

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
              W+H  I +++I+LN  L+ +LIDMYSK G ++ A EVF ++   DV VW+AMI+G+A
Sbjct: 495 IGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLA 554

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG    A  +F  M+   V P+S+TF  LL ACSH GLV+EG++ FD M   Y + P+ 
Sbjct: 555 MHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKT 614

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVN 235
           +HY  MVD+LGRAGH+EEA   I  M + P   VW ALL AC     LEL E A   ++ 
Sbjct: 615 KHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLE 674

Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           I     G YVLLSN+Y     W+    +R+ M+  G++K  G S +E+ G +H+F  GD 
Sbjct: 675 IEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEFIVGDN 734

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEE-KEGNLYHHSEKLALAYGILK 354
           +HP ++ I   L  ++ R +S G++  T  +L  V EEE KE  L  HSEK+A+A+G+++
Sbjct: 735 AHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALKLHSEKMAIAFGLIR 794

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
                 IRI KNLR+C DCH+  KM+S++  R I++RDR RFH F GG CSC DYW
Sbjct: 795 ADSQQAIRIVKNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHHFSGGHCSCQDYW 850



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 128/264 (48%), Gaps = 38/264 (14%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +KD+VSWNSM+ GFV+    D+AL  F  M +  V P+  T  SV+  CA+   L     
Sbjct: 305 NKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRK 364

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQ----------------------------- 93
           V + I   ++ +N  +  A IDM+ KCG+++                             
Sbjct: 365 VCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSE 424

Query: 94  --MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFN--VLPDSITFLGLL 149
             +A+++FD++ R D+  WN +ISG    G   +A AIF ++++      PD +T L  L
Sbjct: 425 HGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTL 484

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
           +AC+  G ++ G     +++ +  IQ       +++D+  ++G +E+A  +  S+    D
Sbjct: 485 SACAQLGAMDIGEWIHGYIK-KERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIG-NKD 542

Query: 210 VVVWRALLSACRTFKRLELGEVAI 233
           V VW A+++      R   GE AI
Sbjct: 543 VFVWSAMIAGLAMHGR---GEAAI 563



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 5/220 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNA-RFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           +P  ++ SWN +I     ++      L F R +  S   P+KFTF  +I   A       
Sbjct: 199 IPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLV 258

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN--DVSVWNAMISGV 117
              VH + I+     +  +  +LI  Y+ CG + +A  VF+ ++ N  D+  WN+M++G 
Sbjct: 259 GKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGF 318

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
              G    A  +F +M    V P+++T + +++AC+    +  GRK  D++  R  +   
Sbjct: 319 VQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYI-DRNEMMMN 377

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           L    A +D+  + G +E A GL  +M  + DVV W  ++
Sbjct: 378 LNVCNATIDMFVKCGEVEIARGLFDNME-KRDVVSWTTII 416


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  367 bits (941), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 175/413 (42%), Positives = 261/413 (63%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D++++NSM+ G++ + +  EAL  F  M    +  D FT  +++  CA LGAL   
Sbjct: 332 MEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQG 391

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I ++ +E +  L  AL+DMY KCG++  A  VF  + + DV  W AMI+G+A +
Sbjct: 392 RALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFN 451

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G+   A   F +M      P+S++++ +LTACSH  L+ EGR YFD MR  Y+I PQ+EH
Sbjct: 452 GMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEH 511

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG M+DLLGR+G ++EA  L+ +M ++P+ V+W ++LSACR  K ++L + A  ++ +L 
Sbjct: 512 YGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLE 571

Query: 241 G---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YV L N+Y   ++W+ A  +R +M+++ V+K+ G S + +AG +H+F   D+SH
Sbjct: 572 PDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSH 631

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    I  +L  +  R KS G+ P T  + +DV EEEKE  L  HSEKLA+A+G++  +P
Sbjct: 632 PRILEIIAMLEEISHRLKSLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAP 691

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              + I KNLR+C DCHS IK+ISRL  R IIVRDR RFH F  G CSC D+W
Sbjct: 692 NLPVHIRKNLRVCEDCHSAIKLISRLWNREIIVRDRSRFHHFREGTCSCNDFW 744



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 121/249 (48%), Gaps = 34/249 (13%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P +DV+SW S+I  + R  R  EA+  F+ MLS  + PD+ T  +V+  CA+L  L    
Sbjct: 200 PVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGR 259

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRND-VSVWNAMISGVAIH 120
            +H L+ EK +  +  L  ALIDMY+KCG    A++VFD + R      WNA+I G   H
Sbjct: 260 SLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKH 319

Query: 121 GLAADASAIFTKMEMFNVLP-------------------------------DSITFLGLL 149
           G    A ++F +ME+ +++                                D+ T + LL
Sbjct: 320 GHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLL 379

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
           TAC+  G +++GR     +  R  ++  +    A++D+  + G ++EA  +   M    D
Sbjct: 380 TACASLGALQQGRALHACIEQRL-VEADIYLGTALLDMYMKCGRVDEATIVFQRMGKR-D 437

Query: 210 VVVWRALLS 218
           V  W A+++
Sbjct: 438 VHTWTAMIA 446



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 94/247 (38%), Gaps = 54/247 (21%)

Query: 22  FDEALR--------------FFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLI 67
           FD ALR               FR M  + V PD FTF   ++ C+   +  H+  +  ++
Sbjct: 70  FDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTF-HFLFKCSSSSSRPHSLLLCTML 128

Query: 68  IEKKIELNF-----ILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
               +          +S +LI MY + G    A+  FD +   D   W  +ISG+A  G+
Sbjct: 129 HAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGM 188

Query: 123 AADASAIFTKMEMFNVL-------------------------------PDSITFLGLLTA 151
             D   + ++  + +V+                               PD +T + +L+A
Sbjct: 189 LCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSA 248

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHY-GAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
           C+    +E GR    H+       P  E+   A++D+  + G    A  +  ++   P  
Sbjct: 249 CAKLKDLELGRSL--HLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRP 306

Query: 211 VVWRALL 217
             W A++
Sbjct: 307 QSWNAII 313


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  367 bits (941), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 183/413 (44%), Positives = 262/413 (63%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++V SW SMI G+V+  +  EA+  F +M  + V+ ++ T  +V+  CA LGAL+  
Sbjct: 220 MPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLG 279

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H        + N  +S  LIDMY KCG ++ A +VF+ ++   V  W+AMI G+A+H
Sbjct: 280 MRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMH 339

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +A  +F+ M    + P+ +TF+GLL ACSH GL+ EGR++F  M   Y I PQ+EH
Sbjct: 340 GRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEH 399

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI---VNIS 237
           YG MVDLL RAG + EA+  I +M M+P+ VVW ALL ACR  K +E+ E AI   + + 
Sbjct: 400 YGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELD 459

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
            L  G YV+LSN+Y    RW+    VR+ MK + V+K+ G S + + GV+H+F AG+ SH
Sbjct: 460 PLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESH 519

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I +    L++  + +G++P T +VL+D+ E EK   +  HSEKLAL +G++ T  
Sbjct: 520 PDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPA 579

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T IRI KNLRIC DCHS  K+IS ++ R I+VRDR RFH F    CSC DYW
Sbjct: 580 ETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 632



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 107/250 (42%), Gaps = 33/250 (13%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           WNS +          +A+  F  +    V PD FT +SV+  C  L  L++   +H ++ 
Sbjct: 96  WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 155

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWN----------------- 111
           +     N  L   ++ +Y+ CG++  A+ +F+ + + DV  WN                 
Sbjct: 156 KVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYD 215

Query: 112 --------------AMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL 157
                         +MI+G    G A +A  +F KME   V  + +T + +L AC+  G 
Sbjct: 216 LFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGA 275

Query: 158 VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           ++ G +  ++  +R+  +  +     ++D+  + G +EEA  +   M  E  VV W A++
Sbjct: 276 LDLGMRIHEY-SNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME-ERTVVSWSAMI 333

Query: 218 SACRTFKRLE 227
                  R E
Sbjct: 334 GGLAMHGRAE 343



 Score = 45.4 bits (106), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 4/158 (2%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV--QRNDVSVWNAMISGVAIH 120
           VH  II+    L+ +    +  + +       A+++F  V  Q+ +  VWN+ +  +A  
Sbjct: 47  VHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALAEG 106

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               DA  +F ++  ++V PD+ T   +L AC +   +  GR     +  +   +  L  
Sbjct: 107 DSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGR-ILHGVVEKVGFRSNLYL 165

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
              +V L    G + EA  L   M  + DVV W  +++
Sbjct: 166 QNMIVHLYASCGEMGEARLLFEKMP-QRDVVTWNIMIA 202


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  367 bits (941), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 175/413 (42%), Positives = 262/413 (63%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M   +++ WN+MI G+ +N    +A+  F EM++  V PD  +  S I  CA++G+L  A
Sbjct: 283 MKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQA 342

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+   +       +  +S+ALIDM++KCG ++ A+ VFD     DV VW+AMI G  +H
Sbjct: 343 RWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLH 402

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +A +++  ME   V P+ +TFLGLL AC+H G+V EG  +F+ M + + I PQ +H
Sbjct: 403 GQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRM-ADHKINPQQQH 461

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  ++DLLGRAGH+++AY +I  M ++P V VW ALLSAC+  + +ELG+ A   + +I 
Sbjct: 462 YACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLFSID 521

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YV LSN+Y   + WD    VR  MK+KG+ K  G SW+E+ G +  F+ GD+SH
Sbjct: 522 PSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSH 581

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + I++ +  +  R K  GF+   +  L D+++EE E  L  HSE++ +AYG++ T  
Sbjct: 582 PRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERITIAYGLISTPQ 641

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT +RI+KNLR C +CH+  K+IS+L+ R I+VRD  RFH F+ G+CSCGDYW
Sbjct: 642 GTTLRITKNLRACVNCHAATKLISKLVGREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 119/217 (54%), Gaps = 2/217 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P++ +VSW +++  + +N    EAL  F +M    V+PD     SV+     L  L   
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQG 241

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++  +E    L  +L  MY+KCG++  AK +FD ++  ++ +WNAMISG A +
Sbjct: 242 RSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKN 301

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A DA  +F +M   +V PD+I+    ++AC+  G +E+ R + D   SR   +  +  
Sbjct: 302 GFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQAR-WMDEYVSRSDYRDDVFI 360

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             A++D+  + G +E A  +    T++ DVVVW A++
Sbjct: 361 SSALIDMFAKCGSVECARSVF-DRTLDRDVVVWSAMI 396



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 8/223 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P   V  WN++I G+ RN  F +AL  + +M  ++V PD FTF  ++  C  L  L   
Sbjct: 79  LPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMG 138

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV---QRNDVSVWNAMISGV 117
            +VH  +     E +  +   LI +Y+KC ++  A+ VF+ +   +R  VS W A++S  
Sbjct: 139 RFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVS-WTAIVSAY 197

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQP 176
           A +G   +A  IF++M   +V PD +  + +L A +    +E+GR  +   M+     +P
Sbjct: 198 AQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEP 257

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            L    ++  +  + G +  A  L   M   P++++W A++S 
Sbjct: 258 DL--LISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAMISG 297



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 8/188 (4%)

Query: 34  SSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQ 93
           +S +  D F +AS+I        L     +H  ++   ++ +  L   LI   S  G I 
Sbjct: 15  NSGIHSDSF-YASLIDSSTHKAQLRQ---IHARLLVLGLQFSGFLITKLIHASSSYGDIT 70

Query: 94  MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
            A++VFD + R  V  WNA+I G + +    DA  +++KM++  V PDS TF  LL AC 
Sbjct: 71  FARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACG 130

Query: 154 HCGLVEEGRKYFDHMRS-RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM-EPDVV 211
               ++ GR  F H +  R   +  +     ++ L  +   +  A  +   + + E  +V
Sbjct: 131 GLSHLQMGR--FVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIV 188

Query: 212 VWRALLSA 219
            W A++SA
Sbjct: 189 SWTAIVSA 196


>gi|242041211|ref|XP_002468000.1| hypothetical protein SORBIDRAFT_01g037840 [Sorghum bicolor]
 gi|241921854|gb|EER94998.1| hypothetical protein SORBIDRAFT_01g037840 [Sorghum bicolor]
          Length = 583

 Score =  366 bits (940), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 170/319 (53%), Positives = 232/319 (72%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD+VSWNSMI G VR++   EA+  F  ++SS + PD F+F+SV+  CAR GA  + 
Sbjct: 34  MPVKDLVSWNSMIAGAVRSSHLKEAMYLFSRLVSSGLVPDCFSFSSVLSACARAGARRYG 93

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH+L+ E  +E+N IL++AL+DMY+KCG+I +A E+F+ V+RN +SVWN MISG+A H
Sbjct: 94  VWVHHLMTELGVEMNHILTSALVDMYAKCGRIDVATEIFNKVKRNHISVWNTMISGLASH 153

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL +D   +F KM+   ++PD +TF+ LLTACSHCG+VEE R+YF  M + YSI P++EH
Sbjct: 154 GLGSDVVILFHKMKSEELVPDGVTFVALLTACSHCGMVEEARQYFRSMTTEYSITPEVEH 213

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YGA+VD L RAG ++EAY L+ SM ++PDVV+WRALLSACR +++ +LGEV I +++   
Sbjct: 214 YGALVDTLSRAGLLDEAYKLVMSMNVKPDVVIWRALLSACRRYRQTKLGEVTIEHMACHG 273

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            GDY LLSNMY    RW+ +E V    K+K +RKS+G SW+EL G  H FKAGDRSHP+ 
Sbjct: 274 SGDYTLLSNMYSSANRWNDSEEVWRQRKQKKIRKSKGLSWVELGGSTHGFKAGDRSHPDT 333

Query: 301 QAIDKILGSLIQRTKSEGF 319
           + I  +L  L +R K E F
Sbjct: 334 EDIYLVLHGLCKRAKVEVF 352



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 64/134 (47%), Gaps = 2/134 (1%)

Query: 86  YSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145
           + K G++  A ++F  +   D+  WN+MI+G        +A  +F+++    ++PD  +F
Sbjct: 18  FLKSGQLDKAYQIFKRMPVKDLVSWNSMIAGAVRSSHLKEAMYLFSRLVSSGLVPDCFSF 77

Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
             +L+AC+  G    G  +  H+ +   ++       A+VD+  + G I+ A  +   + 
Sbjct: 78  SSVLSACARAGARRYG-VWVHHLMTELGVEMNHILTSALVDMYAKCGRIDVATEIFNKVK 136

Query: 206 MEPDVVVWRALLSA 219
               + VW  ++S 
Sbjct: 137 RN-HISVWNTMISG 149


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  366 bits (940), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 178/370 (48%), Positives = 237/370 (64%), Gaps = 3/370 (0%)

Query: 44  FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
            A ++  CA + AL     VH  II+   EL+  +S  L+DMY KCG+I+ A+EVF  + 
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 104 RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
             DV+ WNAMISG+A HG   +A  +F +M    V P+ ITF+ +L+ CSH GLV+EGR 
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 164 YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTF 223
           YFD M   + I P+ EHY  MVDL GRAG ++EA   I  M +EP+  VW +LL ACR  
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 224 KRLELGEVAIVNISRLMG---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSW 280
             +EL E A+  +  L     G YVLLSN+Y    RWD A  VR++MK + V+K  G SW
Sbjct: 181 GNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSW 240

Query: 281 LELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLY 340
           +E+   +H F  GD SHP+ + I + L +L  + K+ G++P T  VL DV EE+KE  L 
Sbjct: 241 IEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILG 300

Query: 341 HHSEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFE 400
           HHSEKLA+A+GI+ T PGT IR+ KNLR+C DCH+  K ISR++ R I++RD  RFH F+
Sbjct: 301 HHSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFK 360

Query: 401 GGLCSCGDYW 410
            G CSCGDYW
Sbjct: 361 DGQCSCGDYW 370



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA-Y 61
           + DV SWN+MI G  ++    EA+  F +ML + V+P++ TF  V+ GC+  G ++    
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIH 120
           +  ++  +  I       + ++D++ + G +  A    + +    + SVW +++    +H
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 121 G 121
           G
Sbjct: 181 G 181


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  366 bits (940), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 182/413 (44%), Positives = 254/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +KD+V W++MI G+  N    EA+  F EM    V PD +     +  CA LGAL   
Sbjct: 266 MVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELG 325

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W   L+  ++   N +L  +LID Y+KCG ++ A  V+  ++  D  V+NA+ISG+A++
Sbjct: 326 NWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMY 385

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +M  F + P+  TF+GLL  C+H GLV++GR YF+ M   +S+ P +EH
Sbjct: 386 GQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEH 445

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDLL RAG ++EA+ LI  M M+ +V+VW +LL  CR  +  +L E  +  +  L 
Sbjct: 446 YGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAEHVLKQLIELE 505

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y   +RWD AE +R  + +KG++K  G SW+E+ GV+H+F  GD SH
Sbjct: 506 PWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVDGVVHEFLVGDTSH 565

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P +Q I + L SL +  K  G+ P TE VL DV EEEKE  L  HSEKLA+A+ ++ T  
Sbjct: 566 PLSQKIYEKLESLFKDLKEAGYNPTTEFVLFDVEEEEKEHFLGCHSEKLAVAFALISTGA 625

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IR+ KNLR+C DCH  IK IS++  R I++RD  RFH F  G CSC DYW
Sbjct: 626 KYVIRVVKNLRVCGDCHEAIKHISKVTGREIVIRDNNRFHCFSDGACSCRDYW 678



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 118/220 (53%), Gaps = 4/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K+VVSW  MI G +   +F EA+  FR +L S + PD F    V+  CARLG L   
Sbjct: 165 MVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESG 224

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+   + E  +  N  ++ +L+DMY+KCG ++ A+ VFD +   D+  W+AMI G A +
Sbjct: 225 RWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASN 284

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR-SRYSIQPQLE 179
           GL  +A  +F +M   NV PD    +G L++C+  G +E G      M    +   P L 
Sbjct: 285 GLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLG 344

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              +++D   + G +EEA G +  M  E D VV+ A++S 
Sbjct: 345 --TSLIDFYAKCGSMEEALG-VYKMMKEKDRVVFNAVISG 381



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 107/217 (49%), Gaps = 2/217 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + +   +N+MI G V   RF+ A+  +  M  + + PD FTF+ V+  CARL   +    
Sbjct: 66  NSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVM 125

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+L+ +   + +  +   ++  YSKCG ++ A +VFD +   +V  W  MI G    G 
Sbjct: 126 IHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGK 185

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F  +    + PD    + +L AC+  G +E GR + D       +   +    
Sbjct: 186 FREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGR-WIDRCMRECGLSRNVFVAT 244

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++VD+  + G +EEA  +   M +E D+V W A++  
Sbjct: 245 SLVDMYTKCGSMEEARFVFDGM-VEKDIVCWSAMIQG 280


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 180/413 (43%), Positives = 256/413 (61%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++ VSWN++I GF +N   DEAL  FREM +S ++PD     S +  CA +G L   
Sbjct: 273 MPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLG 332

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I+ +++E   IL  A++DMYSKCG ++ A+++F+ +   D+ +WNAMI+    H
Sbjct: 333 KSIHGFIL-RRLEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTH 391

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA A+F ++    + PD  TF  LL+A SH GLVEEG+ +FD M + + I+P  +H
Sbjct: 392 GCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKH 451

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
              +VDLL R+G +EEA  ++ SM  EP + +W ALLS C   K+LELGE     I    
Sbjct: 452 CVCVVDLLARSGLVEEANEMLASMHTEPTIPIWVALLSGCLNNKKLELGETIAKKILESQ 511

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D     L+SN+Y   K+WD    +R++MK  G +K  G S +E+ G  H F   D+SH
Sbjct: 512 PEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQSH 571

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ Q I K++  L    +  G++P TE V  D+ E+ KE  L +HSE+LA+A+G+L TSP
Sbjct: 572 PQHQEILKMISKLSFEMRKMGYVPRTEFVYHDLDEDVKEQLLSYHSERLAIAFGLLNTSP 631

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT + I KNLR+C DCH  IK IS+++ R I+VRD  RFH F+ G CSCGDYW
Sbjct: 632 GTRLVIIKNLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 684



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 112/222 (50%), Gaps = 3/222 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD V+W++M+ GFV   R  EAL  +  M    V  D+     VI  C   G     
Sbjct: 172 MPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMG 231

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   +   + ++ +++ +L+DMY+K G   +A++VF  +   +   WNA+ISG A +
Sbjct: 232 ASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQN 291

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +A  +F +M    + PDS   +  L AC+  G ++ G+     +  R   Q  L  
Sbjct: 292 GHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILRRLEFQCILG- 350

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRT 222
             A++D+  + G +E A  L   ++   D+V+W A+++ C T
Sbjct: 351 -TAVLDMYSKCGSLESARKLFNKLSSR-DLVLWNAMIACCGT 390



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 101/214 (47%), Gaps = 5/214 (2%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           + +WN+++    R      ALR FR  L S   PD  TF   +  CARLG L+ A  V  
Sbjct: 77  IPAWNALLAARSRAGSPGAALRVFRA-LPSSARPDSTTFTLALTACARLGDLDAAEAVRV 135

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
                    +  + +AL+ +YS+CG +  A  VFD + R D   W+ M++G    G   +
Sbjct: 136 RAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVE 195

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLEHYGAM 184
           A  ++++M    V  D +  +G++ AC+  G    G     H R  R+ ++  +    ++
Sbjct: 196 ALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASV--HGRFLRHGMRMDVVIATSL 253

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
           VD+  + GH + A  +   M    + V W AL+S
Sbjct: 254 VDMYAKNGHFDVARQVFRMMPYR-NAVSWNALIS 286


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 175/410 (42%), Positives = 254/410 (61%), Gaps = 3/410 (0%)

Query: 4    KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
            KD V+WN +I  +++N    EA+  F +M      P+  TF SV+   A L A       
Sbjct: 596  KDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAF 655

Query: 64   HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
            H  II+     N ++  +LIDMY+KCG++  ++++F+ +   D   WNAM+SG A+HG  
Sbjct: 656  HACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHG 715

Query: 124  ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
              A A+F+ M+   V  DS++F+ +L+AC H GLVEEGRK F  M  +Y I+P LEHY  
Sbjct: 716  DRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYAC 775

Query: 184  MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---M 240
            MVDLLGRAG  +E  G I  M +EPD  VW ALL +CR    ++LGEVA+ ++ +L    
Sbjct: 776  MVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRN 835

Query: 241  GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
               +V+LS++Y    RW  A   R  M   G++K+ G SW+EL   +H F+ GD+SHP+ 
Sbjct: 836  PAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQL 895

Query: 301  QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
            +++  +  +L+++ +  G++P    VL +V EE+KE  LY HSE+LA+ + +L T PG+ 
Sbjct: 896  ESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGST 955

Query: 361  IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            I+I KNLR+C DCH+  K IS++  R IIVRD  RFH FE G+CSC DYW
Sbjct: 956  IQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 120/247 (48%), Gaps = 16/247 (6%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P+   + WNSMI  + R+ +++EAL  +  M+   +EPDK+TF  V+  C     L    
Sbjct: 90  PNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGV 149

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           W H  I  + +E +  + A L+DMYSK G ++ A+EVFD + + DV  WNAMI+G++   
Sbjct: 150 WFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSE 209

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLEH 180
              +A   F  M++  V P S++ L L         +E  R    ++ R  +S       
Sbjct: 210 DPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVS--- 266

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA----------CRTFKRLELGE 230
              ++DL  + G ++ A  +   M ++ D V W  +++              F +++LG 
Sbjct: 267 -NGLIDLYSKCGDVDVARRVFDQM-VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN 324

Query: 231 VAIVNIS 237
           V I  +S
Sbjct: 325 VRINKVS 331



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 109/216 (50%), Gaps = 1/216 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D+V+W+++I   V+    +EAL  F+EM + K++P++ T  S++  CA L  L     +
Sbjct: 393 RDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSI 452

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   ++  ++ +     AL+ MY+KCG    A   F+ +   D+  WN++I+G A  G  
Sbjct: 453 HCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDP 512

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F K+ +  + PD+ T +G++ AC+    +++G      +  +   +       A
Sbjct: 513 YNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQG-TCIHGLIVKLGFESDCHVKNA 571

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++D+  + G +  A  L        D V W  +++A
Sbjct: 572 LIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 3/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D+V+WNS+I G+ +      A+  F ++  S + PD  T   V+  CA L  L+  
Sbjct: 491 MSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQG 550

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
             +H LI++   E +  +  ALIDMY+KCG +  A+ +F+      D   WN +I+    
Sbjct: 551 TCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQ 610

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G A +A + F +M + N  P+S+TF+ +L A ++     EG  +   +     +   L 
Sbjct: 611 NGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLV 670

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              +++D+  + G ++ +  L   M  + D V W A+LS 
Sbjct: 671 G-NSLIDMYAKCGQLDYSEKLFNEMDHK-DTVSWNAMLSG 708



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 126/269 (46%), Gaps = 47/269 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVV+WN+MI G  ++    EA+ FFR M    VEP   +  ++  G  +L  +   
Sbjct: 190 MPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELC 249

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT-VQRNDVSVWNAMISGVAI 119
             +H  +  +  + +  +S  LID+YSKCG + +A+ VFD  V ++DVS W  M++G A 
Sbjct: 250 RSIHGYVFRR--DFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVS-WGTMMAGYAH 306

Query: 120 HGLAADASAIFTKMEMFNVLPDSIT----FLG---------------------------- 147
           +G   +   +F KM++ NV  + ++    FL                             
Sbjct: 307 NGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILV 366

Query: 148 ---LLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
              L+   + CG  E+ ++ F  ++ R      L  + A++  L + G+ EEA  L   M
Sbjct: 367 ATPLMVMYAKCGETEKAKQLFWGLQGR-----DLVAWSAIIAALVQTGYPEEALSLFQEM 421

Query: 205 T---MEPDVVVWRALLSACRTFKRLELGE 230
               M+P+ V   ++L AC     L+LG+
Sbjct: 422 QNQKMKPNRVTLMSILPACADLSLLKLGK 450



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 109/219 (49%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D+D VSW +M+ G+  N  F E L  F +M    V  +K +  S     A    L   
Sbjct: 289 MVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKG 348

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++++I+ + +++  L+ MY+KCG+ + AK++F  +Q  D+  W+A+I+ +   
Sbjct: 349 KEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQT 408

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A ++F +M+   + P+ +T + +L AC+   L++ G K       +  +   L  
Sbjct: 409 GYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLG-KSIHCFTVKADMDSDLST 467

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A+V +  + G    A      M+   D+V W +L++ 
Sbjct: 468 GTALVSMYAKCGFFTAALTTFNRMSSR-DIVTWNSLING 505



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 2/122 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD VSWN+M+ G+  +   D A+  F  M  S+V+ D  +F SV+  C   G +   
Sbjct: 694 MDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEG 753

Query: 61  YWV-HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             + H++  +  I+ +    A ++D+  + G           +    D  VW A++    
Sbjct: 754 RKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCR 813

Query: 119 IH 120
           +H
Sbjct: 814 MH 815



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 6/187 (3%)

Query: 33  LSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKI 92
           LSS    +   +  ++  C  L  L     +H  II    + +  ++  LI++YS   K 
Sbjct: 24  LSSSTYTNYLHYPRLLSSCKHLNPL---LQIHAQIIVSGFKHHHSITH-LINLYSLFHKC 79

Query: 93  QMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC 152
            +A+ VFD+       +WN+MI          +A  ++  M    + PD  TF  +L AC
Sbjct: 80  DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKAC 139

Query: 153 SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
           +    ++EG  +F     R  ++  +     +VD+  + G ++ A  +   M  + DVV 
Sbjct: 140 TGALNLQEG-VWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP-KRDVVA 197

Query: 213 WRALLSA 219
           W A+++ 
Sbjct: 198 WNAMIAG 204


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 177/413 (42%), Positives = 263/413 (63%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M   +++ WN+MI G+ +N    EA+  F EM++  V PD  +  S I  CA++G+L  A
Sbjct: 283 MKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQA 342

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             ++  +       +  +S+ALIDM++KCG ++ A+ VFD     DV VW+AMI G  +H
Sbjct: 343 RSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLH 402

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +A +++  ME   V P+ +TFLGLL AC+H G+V EG  +F+ M + + I PQ +H
Sbjct: 403 GRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRM-ADHKINPQQQH 461

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  ++DLLGRAGH+++AY +I  M ++P V VW ALLSAC+  + +ELGE A   + +I 
Sbjct: 462 YACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSID 521

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YV LSN+Y   + WD    VR  MK+KG+ K  G SW+E+ G +  F+ GD+SH
Sbjct: 522 PSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSH 581

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + I++ +  +  R K  GF+   +  L D+++EE E  L  HSE++A+AYG++ T  
Sbjct: 582 PRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQ 641

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT +RI+KNLR C +CH+  K+IS+L+ R I+VRD  RFH F+ G+CSCGDYW
Sbjct: 642 GTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 122/217 (56%), Gaps = 2/217 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P++ +VSW +++  + +N    EAL  F +M    V+PD     SV+     L  L   
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQG 241

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++  +E+   L  +L  MY+KCG++  AK +FD ++  ++ +WNAMISG A +
Sbjct: 242 RSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKN 301

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +A  +F +M   +V PD+I+    ++AC+  G +E+ R  ++++  R   +  +  
Sbjct: 302 GYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYV-GRSDYRDDVFI 360

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             A++D+  + G +E A  L+   T++ DVVVW A++
Sbjct: 361 SSALIDMFAKCGSVEGAR-LVFDRTLDRDVVVWSAMI 396



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 124/290 (42%), Gaps = 47/290 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P   +  WN++I G+ RN  F +AL  +  M  ++V PD FTF  ++  C+ L  L   
Sbjct: 79  LPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMG 138

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV---QRNDVSVWNAMISGV 117
            +VH  +     + +  +   LI +Y+KC ++  A+ VF+ +   +R  VS W A++S  
Sbjct: 139 RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVS-WTAIVSAY 197

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA--C----------------------- 152
           A +G   +A  IF++M   +V PD +  + +L A  C                       
Sbjct: 198 AQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEP 257

Query: 153 ----------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
                     + CG V   +  FD M+S     P L  + AM+    + G+  EA  +  
Sbjct: 258 DLLISLNTMYAKCGQVATAKILFDKMKS-----PNLILWNAMISGYAKNGYAREAIDMFH 312

Query: 203 SMT---MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSN 249
            M    + PD +   + +SAC     LE        + R    D V +S+
Sbjct: 313 EMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISS 362



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 8/188 (4%)

Query: 34  SSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQ 93
           +S +  D F +AS+I        L     +H  ++   ++ +  L   LI   S  G I 
Sbjct: 15  NSGIHSDSF-YASLIDSATHKAQLKQ---IHARLLVLGLQFSGFLITKLIHASSSFGDIT 70

Query: 94  MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
            A++VFD + R  +  WNA+I G + +    DA  +++ M++  V PDS TF  LL ACS
Sbjct: 71  FARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACS 130

Query: 154 HCGLVEEGRKYFDHMRS-RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM-EPDVV 211
               ++ GR  F H +  R      +     ++ L  +   +  A  +   + + E  +V
Sbjct: 131 GLSHLQMGR--FVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIV 188

Query: 212 VWRALLSA 219
            W A++SA
Sbjct: 189 SWTAIVSA 196


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 186/413 (45%), Positives = 250/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  + +V+WN+MI G+V N R ++ LR FR ML + V+P+  +  SV+ GC+ L AL   
Sbjct: 223 MSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLG 282

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH L+ +  +  +     +L+ MYSKCG ++ A E+F  + R DV  WNAMISG A H
Sbjct: 283 KQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQH 342

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +M+   + PD ITF+ +L AC+H GLV+ G +YF+ MR  + I+ + EH
Sbjct: 343 GAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEH 402

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  MVDLLGRAG + EA  LI SM  +P   ++  LL ACR  K L L E A  N+  L 
Sbjct: 403 YACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELD 462

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             +   YV L+N+Y    RWD   ++R  MK   V K  G SW+E+  V+H F++ DR H
Sbjct: 463 PTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEINSVVHGFRSSDRLH 522

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE  +I + L  L ++ K  G++P  E VL DV EE KE  L  HSEKLA+A+G+LK   
Sbjct: 523 PELASIHEKLKDLEKKMKLAGYVPDLEFVLHDVGEELKEQLLLWHSEKLAIAFGLLKVPL 582

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCHS  K IS +  R IIVRD  RFH F+ G CSC DYW
Sbjct: 583 GVPIRVFKNLRVCGDCHSATKYISTIEGREIIVRDTTRFHHFKDGFCSCRDYW 635



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 104/219 (47%), Gaps = 10/219 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KDV SWN+MI    +     EA R F  M     E +  ++++++ G    G L+ A
Sbjct: 130 MPLKDVASWNTMISALAQVGLMGEARRLFSAM----PEKNCVSWSAMVSGYVACGDLDAA 185

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                    + +    I   A+I  Y K G++++A+ +F  +    +  WNAMI+G   +
Sbjct: 186 VECFYAAPMRSV----ITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVEN 241

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A D   +F  M    V P++++   +L  CS+   ++ G++    +  +  +      
Sbjct: 242 GRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQ-VHQLVCKCPLSSDTTA 300

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             ++V +  + G +++A+ L   +  + DVV W A++S 
Sbjct: 301 GTSLVSMYSKCGDLKDAWELFIQIPRK-DVVCWNAMISG 338



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 103/228 (45%), Gaps = 19/228 (8%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCAR-LGALNHAY 61
           + +V++ N +I  +VR    D A+R F +M   KV+    T+ S++   A+  G   +A 
Sbjct: 38  NNNVIASNKLIASYVRCGDIDSAVRVFEDM---KVK-STVTWNSILAAFAKKPGHFEYA- 92

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
                + EK  + N +    ++  +     +  A+  FD++   DV+ WN MIS +A  G
Sbjct: 93  ---RQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVG 149

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
           L  +A  +F+ M   N     +++  +++    CG ++   + F     R  I      +
Sbjct: 150 LMGEARRLFSAMPEKNC----VSWSAMVSGYVACGDLDAAVECFYAAPMRSVIT-----W 200

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG 229
            AM+    + G +E A  L   M+M   +V W A+++      R E G
Sbjct: 201 TAMITGYMKFGRVELAERLFQEMSMR-TLVTWNAMIAGYVENGRAEDG 247


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 177/413 (42%), Positives = 258/413 (62%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  + +VSWN+MI GF +N R  EAL +F +M +  V+PD FT+ SVI   A L   +HA
Sbjct: 398 LQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHA 457

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H +++   ++ N  ++ AL+DMY+KCG I +A+ +FD +    V+ WNAMI G   H
Sbjct: 458 KWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTH 517

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G+   A  +F +M+   + P+ +TFL +++ACSH GLVE G K F  M+  YSI+P ++H
Sbjct: 518 GIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDH 577

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YGAMVDLLGRAG + EA+  I  M ++P V V+ A+L AC+  K +   E     +  L 
Sbjct: 578 YGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLFELN 637

Query: 241 ---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              GG +VLL+N+Y     W+    VR  M ++G+RK+ G S +E+   +H F +G  +H
Sbjct: 638 PEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAH 697

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P ++ I   L  LI + K  G++P T L+L  + ++ KE  L  HSEKLA+++G+L T+ 
Sbjct: 698 PSSKKIYAFLEKLICQIKEAGYVPDTNLIL-GLEDDVKEQLLSSHSEKLAISFGLLNTTA 756

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT I + KNLR+C DCH+  K IS +  R IIVRD  RFH F+ G CSCGDYW
Sbjct: 757 GTTIHVRKNLRVCADCHNATKYISLVTGREIIVRDMQRFHHFKNGACSCGDYW 809



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 114/217 (52%), Gaps = 2/217 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++VVSWNSMI  +V+N    EA+  F++ML   V+P   +    ++ CA LG L   
Sbjct: 297 MLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERG 356

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            ++H L +E +++ N  +  +LI MY KC ++  A  +F  +Q   +  WNAMI G A +
Sbjct: 357 RFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQN 416

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A   F++M+   V PD+ T++ ++TA +   +     K+   +  R  +   +  
Sbjct: 417 GRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHA-KWIHGVVMRNCLDKNVFV 475

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             A+VD+  + G I  A  LI  M  E  V  W A++
Sbjct: 476 TTALVDMYAKCGAIMIAR-LIFDMMSERHVTTWNAMI 511



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 110/214 (51%), Gaps = 4/214 (1%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           V + +M+ GF + +  D+AL+FF  M   +VEP  + F  ++  C     L     +H L
Sbjct: 101 VLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGL 160

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           +++    L+      L +MY+KC ++  A++VFD +   D+  WN +++G + +G+A  A
Sbjct: 161 LVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMA 220

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMV 185
             +   M   N+ P  IT + +L A S   L+  G++   + MR+ +     +    A+V
Sbjct: 221 LEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIA--TALV 278

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           D+  + G ++ A  L   M +E +VV W +++ A
Sbjct: 279 DMYAKCGSLKTARLLFDGM-LERNVVSWNSMIDA 311



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 106/220 (48%), Gaps = 8/220 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D+VSWN+++ G+ +N     AL     M    ++P   T  SV+   + L  +   
Sbjct: 196 MPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIG 255

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   +    +    ++ AL+DMY+KCG ++ A+ +FD +   +V  WN+MI     +
Sbjct: 256 KEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQN 315

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A  IF KM    V P  ++ +G L AC+  G +E GR +   +     +   +  
Sbjct: 316 ENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR-FIHKLSVELELDRNVSV 374

Query: 181 YGAMVDLLGRAGHIEEA---YGLITSMTMEPDVVVWRALL 217
             +++ +  +   ++ A   +G + S T    +V W A++
Sbjct: 375 VNSLISMYCKCKEVDTAASMFGKLQSRT----IVSWNAMI 410


>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 591

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 188/419 (44%), Positives = 260/419 (62%), Gaps = 10/419 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM---LSSKVEPDKFTFASVIYGCARLGAL 57
           +P +D VSWN +I  ++RN R  + L  F +M   +   V+PD  T    +  CA LGAL
Sbjct: 174 IPQRDTVSWNVLISCYLRNKRTRDVLVLFDKMKNDVDRCVKPDNVTCLLALQACANLGAL 233

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
           +    VH+ I E  +     LS  L+ MYS+CG +  A EVF+ ++  +V  W AMISG+
Sbjct: 234 DFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYEVFNRMRERNVVSWTAMISGL 293

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQP 176
           A++G   +A   F +M  F + P+  T  GLL+ACSH GLV+EG  +FD MRS  + I+P
Sbjct: 294 AMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVDEGMMFFDRMRSGEFKIKP 353

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNI 236
            L HYG +VDLLGRA  +++AY LI SM M+PD  +WR LL ACR    +ELGE  I ++
Sbjct: 354 NLHHYGCIVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGNVELGERVIAHL 413

Query: 237 SRLM---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
                   GDYVLL N Y  + +W+    +R +MKKK ++ + G S +EL G +H+F   
Sbjct: 414 IEFKAEEAGDYVLLLNTYSSVGKWEKVTELRSLMKKKRIQTNPGCSAIELQGTVHEFIVD 473

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLP--ATELVLMDVSEEEKEGNLYHHSEKLALAYG 351
           D SHP  + I K+L  + Q+ K  G++    +EL  +D SEEEK   L +HSEKLA+A+G
Sbjct: 474 DVSHPRKEEIYKMLAEINQQLKIAGYVAEITSELHNLD-SEEEKGYALRYHSEKLAIAFG 532

Query: 352 ILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IL T P T IR++KNLR C DCH++ K +S +  RV+IVRDR RFH F+GG CSC D+W
Sbjct: 533 ILVTPPETTIRVTKNLRTCVDCHNFAKFVSDVYDRVVIVRDRSRFHHFKGGSCSCNDFW 591



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 98/216 (45%), Gaps = 10/216 (4%)

Query: 10  NSMIGGFVRNARFDEALRFFREM---LSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           N+MI  F  +    E  R FR +   +S    P   +FA  +  C + G L     +H  
Sbjct: 81  NTMIRAFSLSQTPCEGFRLFRALRRNISFPANPLSSSFA--LKCCIKSGDLLGGLQIHGK 138

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           I       + +L   L+D+YS C     A +VFD + + D   WN +IS    +    D 
Sbjct: 139 IFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPQRDTVSWNVLISCYLRNKRTRDV 198

Query: 127 SAIFTKMEM---FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             +F KM+      V PD++T L  L AC++ G ++ G++  D +     +   L     
Sbjct: 199 LVLFDKMKNDVDRCVKPDNVTCLLALQACANLGALDFGKQVHDFI-DENGLSGALNLSNT 257

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +V +  R G +++AY +   M  E +VV W A++S 
Sbjct: 258 LVSMYSRCGSMDKAYEVFNRMR-ERNVVSWTAMISG 292


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 183/417 (43%), Positives = 266/417 (63%), Gaps = 7/417 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS--SKVEPDKFTFASVIYGCARLGALN 58
           M  +++VSW +MI G+ +N   ++AL  F EML   S+++P+  T  SV+  CA+  AL 
Sbjct: 199 MEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALE 258

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN--DVSVWNAMISG 116
               +H+      + LN  +  AL  MY+KC  +  A+  FD + +N  ++  WN MI+ 
Sbjct: 259 RGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITA 318

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
            A HG   +A +IF  M    V PD++TF+GLL+ CSH GL++ G  +F+ M + +S++P
Sbjct: 319 YASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEP 378

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNI 236
           ++EHY  +VDLLGRAG + EA  LI+ M M+    VW ALL+ACR+ + LE+ E+A   +
Sbjct: 379 RVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRL 438

Query: 237 SRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
             L     G+YVLLSN+Y     W+  + +R ++K +G++KS G SW+E+ G  H F   
Sbjct: 439 FVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGA 498

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           D+SHP+A+ I K L +L ++ K  G++P T  VL D+SEEEKE NL  HSEKLA+A+G+L
Sbjct: 499 DKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLL 558

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T PG  +R++KNLRIC DCH+  K IS++  R IIVRD  RFH F+ G CSCGDYW
Sbjct: 559 NTRPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 615



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 4/129 (3%)

Query: 40  DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF 99
           D FT   V+  CA L  +     VH   +   +E +F + A+LIDMY KCG I  A+++F
Sbjct: 106 DNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLF 165

Query: 100 DTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVE 159
           D +   D++ WNA+I+G    G    A  +F +ME  N+    +++  +++  +  G  E
Sbjct: 166 DKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNI----VSWTAMISGYTQNGFAE 221

Query: 160 EGRKYFDHM 168
           +    FD M
Sbjct: 222 QALGLFDEM 230


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 175/410 (42%), Positives = 254/410 (61%), Gaps = 3/410 (0%)

Query: 4    KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
            KD V+WN +I  +++N    EA+  F +M      P+  TF SV+   A L A       
Sbjct: 596  KDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAF 655

Query: 64   HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
            H  II+     N ++  +LIDMY+KCG++  ++++F+ +   D   WNAM+SG A+HG  
Sbjct: 656  HACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHG 715

Query: 124  ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
              A A+F+ M+   V  DS++F+ +L+AC H GLVEEGRK F  M  +Y I+P LEHY  
Sbjct: 716  DRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYAC 775

Query: 184  MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---M 240
            MVDLLGRAG  +E  G I  M +EPD  VW ALL +CR    ++LGEVA+ ++ +L    
Sbjct: 776  MVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRN 835

Query: 241  GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
               +V+LS++Y    RW  A   R  M   G++K+ G SW+EL   +H F+ GD+SHP+ 
Sbjct: 836  PAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQL 895

Query: 301  QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
            +++  +  +L+++ +  G++P    VL +V EE+KE  LY HSE+LA+ + +L T PG+ 
Sbjct: 896  ESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGST 955

Query: 361  IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            I+I KNLR+C DCH+  K IS++  R IIVRD  RFH FE G+CSC DYW
Sbjct: 956  IQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 120/247 (48%), Gaps = 16/247 (6%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P+   + WNSMI  + R+ +++EAL  +  M+   +EPDK+TF  V+  C     L    
Sbjct: 90  PNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGV 149

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           W H  I  + +E +  + A L+DMYSK G ++ A+EVFD + + DV  WNAMI+G++   
Sbjct: 150 WFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSE 209

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLEH 180
              +A   F  M++  V P S++ L L         +E  R    ++ R  +S       
Sbjct: 210 DPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVS--- 266

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA----------CRTFKRLELGE 230
              ++DL  + G ++ A  +   M ++ D V W  +++              F +++LG 
Sbjct: 267 -NGLIDLYSKCGDVDVARRVFDQM-VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN 324

Query: 231 VAIVNIS 237
           V I  +S
Sbjct: 325 VRINKVS 331



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 109/216 (50%), Gaps = 1/216 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D+V+W+++I   V+    +EAL  F+EM + K++P++ T  S++  CA L  L     +
Sbjct: 393 RDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSI 452

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   ++  ++ +     AL+ MY+KCG    A   F+ +   D+  WN++I+G A  G  
Sbjct: 453 HCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDP 512

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F K+ +  + PD+ T +G++ AC+    +++G      +  +   +       A
Sbjct: 513 YNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQG-TCIHGLIVKLGFESDCHVKNA 571

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++D+  + G +  A  L        D V W  +++A
Sbjct: 572 LIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 110/220 (50%), Gaps = 3/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D+V+WNS+I G+ +      A+  F ++  S + PD  T   V+  CA L  L+  
Sbjct: 491 MSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQG 550

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
             +H LI++   E +  +  ALIDMY+KCG +  A+ +F+      D   WN +I+    
Sbjct: 551 TCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQ 610

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G A +A + F +M + N  P+S+TF+ +L A ++     EG  +   +     +   L 
Sbjct: 611 NGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLV 670

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              +++D+  + G +  +  L   M  + D V W A+LS 
Sbjct: 671 G-NSLIDMYAKCGQLXYSEKLFNEMDHK-DTVSWNAMLSG 708



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 126/269 (46%), Gaps = 47/269 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVV+WN+MI G  ++    EA+ FFR M    VEP   +  ++  G  +L  +   
Sbjct: 190 MPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELC 249

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT-VQRNDVSVWNAMISGVAI 119
             +H  +  +  + +  +S  LID+YSKCG + +A+ VFD  V ++DVS W  M++G A 
Sbjct: 250 RSIHGYVFRR--DFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVS-WGTMMAGYAH 306

Query: 120 HGLAADASAIFTKMEMFNVLPDSIT----FLG---------------------------- 147
           +G   +   +F KM++ NV  + ++    FL                             
Sbjct: 307 NGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILV 366

Query: 148 ---LLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
              L+   + CG  E+ ++ F  ++ R      L  + A++  L + G+ EEA  L   M
Sbjct: 367 ATPLMVMYAKCGETEKAKQLFWGLQGR-----DLVAWSAIIAALVQTGYPEEALSLFQEM 421

Query: 205 T---MEPDVVVWRALLSACRTFKRLELGE 230
               M+P+ V   ++L AC     L+LG+
Sbjct: 422 QNQKMKPNRVTLMSILPACADLSLLKLGK 450



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 109/219 (49%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D+D VSW +M+ G+  N  F E L  F +M    V  +K +  S     A    L   
Sbjct: 289 MVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKG 348

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++++I+ + +++  L+ MY+KCG+ + AK++F  +Q  D+  W+A+I+ +   
Sbjct: 349 KEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQT 408

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A ++F +M+   + P+ +T + +L AC+   L++ G K       +  +   L  
Sbjct: 409 GYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLG-KSIHCFTVKADMDSDLST 467

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A+V +  + G    A      M+   D+V W +L++ 
Sbjct: 468 GTALVSMYAKCGFFTAALTTFNRMSSR-DIVTWNSLING 505



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 2/122 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD VSWN+M+ G+  +   D A+  F  M  S+V+ D  +F SV+  C   G +   
Sbjct: 694 MDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEG 753

Query: 61  YWV-HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             + H++  +  I+ +    A ++D+  + G           +    D  VW A++    
Sbjct: 754 RKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCR 813

Query: 119 IH 120
           +H
Sbjct: 814 MH 815



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 6/187 (3%)

Query: 33  LSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKI 92
           LSS    +   +  ++  C  L  L     +H  II    + +  ++  LI++YS   K 
Sbjct: 24  LSSSTYTNYLHYPRLLSSCKHLNPL---LQIHAQIIVSGFKHHHSITH-LINLYSLFHKC 79

Query: 93  QMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC 152
            +A+ VFD+       +WN+MI          +A  ++  M    + PD  TF  +L AC
Sbjct: 80  DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKAC 139

Query: 153 SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
           +    ++EG  +F     R  ++  +     +VD+  + G ++ A  +   M  + DVV 
Sbjct: 140 TGALNLQEG-VWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP-KRDVVA 197

Query: 213 WRALLSA 219
           W A+++ 
Sbjct: 198 WNAMIAG 204


>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
 gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
          Length = 607

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 185/413 (44%), Positives = 260/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M    VV+W++MIGG+VR     +A+  FREM +S V PD+ T   V+   A LGAL  A
Sbjct: 195 MDKSSVVTWSAMIGGYVRGGLSSDAVGLFREMQASGVRPDEVTVIGVLAAAADLGALELA 254

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WV   +  + I  +  L  ALID  +KCG +  A  VF  ++   V  W ++I  +A+ 
Sbjct: 255 RWVGRFVEREGIGKSVTLCNALIDALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAME 314

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A A+F  M+   V PD + F+G+LTACSH G+V+EG  YFD M+  Y I P++EH
Sbjct: 315 GRGKEAVAVFEAMKTAGVRPDDVVFIGVLTACSHAGMVDEGYGYFDSMKMEYGIDPKIEH 374

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV---AIVNIS 237
           YG MVD+ GRAG +E A   I +M M+P+ ++WR L++ACR   RLELGE     ++N  
Sbjct: 375 YGCMVDMFGRAGMVERAMEFIHTMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEY 434

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                +YV+LSN+Y   +RW     +R  M K+G++K  G S +EL G +H+F AGD SH
Sbjct: 435 PAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESH 494

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I  ++  + +  K  G + AT  VL+D+ EE+KEG L  HSEKLA+A+ +L+T P
Sbjct: 495 PQWKEIYMMVEEMARELKHVGHISATSEVLLDLDEEDKEGALQWHSEKLAIAFVLLRTPP 554

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT++R+ KNLR+C DCH+ IK IS +  R IIVRDR RFHRF+ G CSC D+W
Sbjct: 555 GTQVRVVKNLRVCSDCHAAIKCISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 607



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 97/198 (48%), Gaps = 5/198 (2%)

Query: 25  ALRFFREMLSSKVEPDKFTFASVIYGCARL-GALNHAYWVHNLIIEKKIELNFILSAALI 83
           A  FF  ML S V P+KFTF  ++  CA L G        H   ++     +  +S  LI
Sbjct: 115 AAAFFPLMLRSAVLPNKFTFPFLLKACAALPGFPGVGLQAHAAALKFGFATDQYVSNTLI 174

Query: 84  DMYSKCGK--IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
            MYS  G   +  A+ VFD + ++ V  W+AMI G    GL++DA  +F +M+   V PD
Sbjct: 175 HMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGYVRGGLSSDAVGLFREMQASGVRPD 234

Query: 142 SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
            +T +G+L A +  G +E  R +      R  I   +    A++D L + G ++ A  + 
Sbjct: 235 EVTVIGVLAAAADLGALELAR-WVGRFVEREGIGKSVTLCNALIDALAKCGDVDGAVAVF 293

Query: 202 TSMTMEPDVVVWRALLSA 219
             M  E  VV W +++ A
Sbjct: 294 QGME-ERTVVSWTSVIDA 310


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 184/414 (44%), Positives = 264/414 (63%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K VV+WNSMI G+ +N    EA+  F  M    V+PD  TF S++  CA++GA+   
Sbjct: 179 MPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLG 238

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           +WVH  I     +LN +L  AL++MYS+CG +  A+EVFD+++  ++  W AMISG  +H
Sbjct: 239 FWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMH 298

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  + A  +F +M      P+++TF+ +L+AC+H GLV+EGR+ F  M+  Y + P +EH
Sbjct: 299 GHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEH 358

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMT-MEPDVVVWRALLSACRTFKRLELG-EVA--IVNI 236
              MVD+LGRAGH+ EAY  I + +  EP   VW A+L AC+  K  +LG EVA  +++I
Sbjct: 359 QVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSI 418

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YV+LSN+Y    R D  E +R IM +  ++K  G S +++   ++ F  GD+S
Sbjct: 419 EPENPGHYVMLSNIYALAGRMDRVEKIRNIMIRNRLKKEVGYSTIDVDHKVYLFSMGDKS 478

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+   I   L  L+ R +  G++PA+E V+ +V EEE+E  L +HSEKLA+A+G+LKT 
Sbjct: 479 HPKTNQIYLYLDELMSRCREAGYIPASESVMHEVEEEEREYALRYHSEKLAIAFGLLKTG 538

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  IRI KNLR+C DCH+ IK IS +  R I VRDR+RFH F+ G CSC DYW
Sbjct: 539 SGVAIRIVKNLRMCEDCHTAIKYISIIANREINVRDRLRFHHFKDGSCSCQDYW 592



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 116/258 (44%), Gaps = 43/258 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  D   ++S+I    + +   E+L  +R ML + +    +TF++VI   A L A +  
Sbjct: 78  IPKPDTFLFHSLITLTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIG 137

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +      L+  + AAL+  Y+K G + +A++VFD +    V  WN+MISG   +
Sbjct: 138 ETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQN 197

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTAC---------------------------- 152
           G   +A  +F  M+   V PDS TF+ LL+AC                            
Sbjct: 198 GFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLG 257

Query: 153 -------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
                  S CG V + R+ FD M  +      +  + AM+   G  GH  +A  L   M+
Sbjct: 258 TALMNMYSRCGNVSKAREVFDSMEEK-----NIVAWTAMISGYGMHGHGSQAIELFNEMS 312

Query: 206 ME---PDVVVWRALLSAC 220
            +   P+ V + A+LSAC
Sbjct: 313 FDGPRPNNVTFVAVLSAC 330


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 178/414 (42%), Positives = 261/414 (63%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP  D+V+WN MI G+  N +F +A++ F  ML     P   T  SV+   + L  L   
Sbjct: 218 MPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKG 277

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H+ + +   EL+ IL  +LI+MY+KCG I+ A  VF  +Q+  V  W A+I G+ IH
Sbjct: 278 RWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIH 337

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G+A  A A+F +M    + P++I F+G+L AC+H GLV++GR+YFD M + Y I+P LEH
Sbjct: 338 GMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEH 397

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG +VD+L RAGH+EEA   I +M + P+ V+W +LL   R   ++++GE A   ++ ++
Sbjct: 398 YGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVA 457

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y+LLSNMY     W+   +VRE+M K+G RK  G S +E  G +H+F  GD SH
Sbjct: 458 PETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISH 517

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDV-SEEEKEGNLYHHSEKLALAYGILKTS 356
           P+ + I   +  + ++ K  G +P T  VL+ +  E+EKE  L +HSE+LA+A+G++   
Sbjct: 518 PQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLINVK 577

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PG  IRI KNLR+C+DCHS  K++S++  R IIVRD  RFH F+ G CSC DYW
Sbjct: 578 PGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 631



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 117/293 (39%), Gaps = 76/293 (25%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           + ++ WN++I  +V N    + +  F E++   + PD FT   VI GCARLG +     +
Sbjct: 79  RSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQI 137

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA----------- 112
           H L ++     +  +  +L++MYSKCG+I  A++VFD +   DV +WN+           
Sbjct: 138 HGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNA 197

Query: 113 -------------------------------MISGVAIHGLAADASAIFTKMEMFNVLPD 141
                                          MI+G  ++G   DA  +F  M      P 
Sbjct: 198 MINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPS 257

Query: 142 SITFLGLLTACSHCGLVEEGRKYFDHMRS------------------------------R 171
             T + +L+A S   ++ +GR    +M                                R
Sbjct: 258 HATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFR 317

Query: 172 YSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACR 221
              + ++ H+ A++  LG  G    A  L   M    ++P+ +++  +L+AC 
Sbjct: 318 AIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACN 370



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 80/159 (50%), Gaps = 5/159 (3%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYS--KCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           +H   ++  I  +  +S+ L+ +YS  K   +  A+ +FD +QR  +  WN +I     +
Sbjct: 35  LHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVEN 94

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
             + D   +F ++ +   LPD+ T   ++  C+  G+V+EG++    +  +      +  
Sbjct: 95  QFSHDGIVLFHEL-VHEYLPDNFTLPCVIKGCARLGVVQEGKQ-IHGLALKIGFGSDVFV 152

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            G++V++  + G I+ A  +   M ++ DVV+W +L+  
Sbjct: 153 QGSLVNMYSKCGEIDCARKVFDGM-IDKDVVLWNSLIDG 190


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 178/400 (44%), Positives = 262/400 (65%), Gaps = 6/400 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KD+V+WNS+I GF  N + +EAL  + EM S  ++PD FT  S++  CA++GAL   
Sbjct: 182 MPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLG 241

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT-VQRNDVSVWNAMISGVAI 119
             VH  +I+  +  N   S  L+D+Y++CG+++ AK +FD  V +N VS W ++I G+A+
Sbjct: 242 KRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVS-WTSLIVGLAV 300

Query: 120 HGLAADASAIFTKMEMFN-VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +G   +A  +F  ME    +LP  ITF+G+L ACSHCG+V+EG +YF  MR  Y I+P++
Sbjct: 301 NGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRI 360

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           EH+G MVDLL RAG +++AY  I SM M+P+VV+WR LL AC      +L E A + I +
Sbjct: 361 EHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQ 420

Query: 239 L---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L     GDYVLLSNMY   +RW   + +R+ M + GV+K  G S +E+   +H+F  GD+
Sbjct: 421 LEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDK 480

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SHP++ AI   L  +  R +SEG++P    V +DV EEEKE  + +HSEK+A+A+ ++ T
Sbjct: 481 SHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLIST 540

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIR 395
              + I + KNLR+C DCH  IK++S++  R I+VRDR R
Sbjct: 541 PERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSR 580



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 109/214 (50%), Gaps = 3/214 (1%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +V  WN++I G+        A   +REM +S  VEPD  T+  +I     +  +     +
Sbjct: 84  NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H+++I         +  +L+ +Y+ CG +  A +VFD +   D+  WN++I+G A +G  
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKP 203

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A A++T+M    + PD  T + LL+AC+  G +  G++   +M  +  +   L     
Sbjct: 204 EEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM-IKVGLTRNLHSSNV 262

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           ++DL  R G +EEA  L   M ++ + V W +L+
Sbjct: 263 LLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLI 295


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 184/413 (44%), Positives = 257/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVVSW++MIG +V N    EA   F  M  S +EPD  T+ +++  C  LGAL+  
Sbjct: 421 MPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVG 480

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             ++   I+  +  +  L  ALI M +K G ++ A+ +FDT+ R DV  WNAMI G ++H
Sbjct: 481 MEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLH 540

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +A  +F +M      P+S+TF+G+L+ACS  G V+EGR++F ++     I P ++ 
Sbjct: 541 GNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKL 600

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDLLGRAG ++EA  LI SM ++P   +W +LL ACR    L++ E A    + I 
Sbjct: 601 YGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMID 660

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              G  YV LS+MY     W+    VR++M+ +G+RK QG +W+E+AG +H F   DRSH
Sbjct: 661 PYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDRSH 720

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    I   L  L+   K EG++P T+ VL DV E++KE  + +HSEKLA+AYG+L    
Sbjct: 721 PLVGEIYAELARLMNAIKREGYIPITQNVLHDVGEQQKEEAISYHSEKLAIAYGVLSLPS 780

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IRI KNLR+C DCHS  K IS++  R II RD  RFH F+ G+CSCGDYW
Sbjct: 781 GTPIRIYKNLRVCSDCHSASKFISKVTGREIIARDASRFHHFKDGVCSCGDYW 833



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 115/219 (52%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVVSW  MI G+  N   ++A   F  M    ++PD+ T+  ++  CA    LNHA
Sbjct: 320 MKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHA 379

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ +       + ++S AL+ MY+KCG I+ A++VFD + R DV  W+AMI     +
Sbjct: 380 REIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVEN 439

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A   F  M+  N+ PD +T++ LL AC H G ++ G + +     +  +   +  
Sbjct: 440 GYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQA-IKADLVSHVPL 498

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++ +  + G +E A  +  +M +  DV+ W A++  
Sbjct: 499 GNALIIMNAKHGSVERARYIFDTM-VRRDVITWNAMIGG 536



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 120/256 (46%), Gaps = 43/256 (16%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K VV+WN++I G+ +     EA   FR+M+   +EP   TF SV+  C+    LN    
Sbjct: 120 NKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKE 179

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  ++      +F +  AL+ MY K G +  A++VFD +   DVS +N M+ G A  G 
Sbjct: 180 VHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGD 239

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTAC------------------------------ 152
              A  +F +M+   + P+ I+FL +L  C                              
Sbjct: 240 WEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATS 299

Query: 153 -----SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT-- 205
                + CG +E  R+ FD+M+ R  +      +  M++     G+IE+A+GL  +M   
Sbjct: 300 LIRMYTTCGSIEGARRVFDNMKVRDVVS-----WTVMIEGYAENGNIEDAFGLFATMQEE 354

Query: 206 -MEPDVVVWRALLSAC 220
            ++PD + +  +++AC
Sbjct: 355 GIQPDRITYMHIMNAC 370



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 122/264 (46%), Gaps = 43/264 (16%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +DV ++N M+GG+ ++  +++A   F  M    ++P+K +F S++ GC    AL     V
Sbjct: 222 RDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAV 281

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   +   +  +  ++ +LI MY+ CG I+ A+ VFD ++  DV  W  MI G A +G  
Sbjct: 282 HAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNI 341

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTAC------------------------------- 152
            DA  +F  M+   + PD IT++ ++ AC                               
Sbjct: 342 EDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTAL 401

Query: 153 ----SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG---LITSMT 205
               + CG +++ R+ FD M  R  +      + AM+      G+  EA+    L+    
Sbjct: 402 VHMYAKCGAIKDARQVFDAMPRRDVVS-----WSAMIGAYVENGYGTEAFETFHLMKRSN 456

Query: 206 MEPDVVVWRALLSACRTFKRLELG 229
           +EPD V +  LL+AC     L++G
Sbjct: 457 IEPDGVTYINLLNACGHLGALDVG 480



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 97/229 (42%), Gaps = 43/229 (18%)

Query: 40  DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF 99
           D  T+  +   C  L        V + II+   +LN      LI +YS CG +  A+++F
Sbjct: 56  DSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIF 115

Query: 100 DTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHC---- 155
           D+V+   V  WNA+I+G A  G   +A A+F +M    + P  ITFL +L ACS      
Sbjct: 116 DSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLN 175

Query: 156 -------------------------------GLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
                                          G +++ R+ FD +  R      +  +  M
Sbjct: 176 WGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIR-----DVSTFNVM 230

Query: 185 VDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGE 230
           V    ++G  E+A+ L   M    ++P+ + + ++L  C T + L  G+
Sbjct: 231 VGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGK 279


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 171/410 (41%), Positives = 259/410 (63%), Gaps = 3/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD++ W++MI  + +N   DEA   F  M    + P++ T  S++  CA+ G+L    W+
Sbjct: 392 KDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWI 451

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H+ I ++ I+ + IL  + +DMY+ CG I  A  +F      D+S+WNAMISG A+HG  
Sbjct: 452 HSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHG 511

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  +F +ME   V P+ ITF+G L ACSH GL++EG++ F  M   +   P++EHYG 
Sbjct: 512 EAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGC 571

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
           MVDLLGRAG ++EA+ LI SM M P++ V+ + L+AC+  K ++LGE A    +++    
Sbjct: 572 MVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHK 631

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G  VL+SN+Y    RW     +R  MK +G+ K  G S +E+ G++H+F  GDR HP+A
Sbjct: 632 SGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDREHPDA 691

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + + +++  + ++ +  G+ P    VL ++ +E+K   L +HSEKLA+AYG++ T+PG  
Sbjct: 692 KKVYEMIDEMREKLEDAGYTPDVSCVLHNIDKEKKVSALNYHSEKLAMAYGLISTAPGVP 751

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IRI KNLR+C DCH+  K++S++  R IIVRDR RFH F+ G CSC DYW
Sbjct: 752 IRIVKNLRVCDDCHNATKLLSKIYGREIIVRDRNRFHHFKEGSCSCCDYW 801



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 109/214 (50%), Gaps = 2/214 (0%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           ++SW +MI  ++     +E +R F +ML   + P++ T  S++  C   GAL     +H 
Sbjct: 293 IISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHA 352

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
             +     L+ +L+ A IDMY KCG ++ A+ VFD+ +  D+ +W+AMIS  A +    +
Sbjct: 353 FTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDE 412

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           A  IF  M    + P+  T + LL  C+  G +E G K+      +  I+  +    + V
Sbjct: 413 AFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMG-KWIHSYIDKQGIKGDMILKTSFV 471

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           D+    G I+ A+ L    T + D+ +W A++S 
Sbjct: 472 DMYANCGDIDTAHRLFAEAT-DRDISMWNAMISG 504



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 105/222 (47%), Gaps = 10/222 (4%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA-----RLGAL 57
           +KDVVSW++MI  + R+   DEAL   R+M   +V+P +    S+ +  A     +LG  
Sbjct: 187 NKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKA 246

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
            HAY + N    K       L  ALIDMY KC  +  A+ VFD + +  +  W AMI+  
Sbjct: 247 MHAYVMRNGKCGKS---GVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAY 303

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
                  +   +F KM    + P+ IT L L+  C   G +E G K       R      
Sbjct: 304 IHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELG-KLLHAFTLRNGFTLS 362

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           L    A +D+ G+ G +  A  +  S   + D+++W A++S+
Sbjct: 363 LVLATAFIDMYGKCGDVRSARSVFDSFKSK-DLMMWSAMISS 403



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 95/209 (45%), Gaps = 2/209 (0%)

Query: 12  MIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKK 71
           +I  +++N    +A + +  M  +  E D F   SV+  C  + +      VH  +++  
Sbjct: 95  LITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNG 154

Query: 72  IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFT 131
              +  +  ALI MYS+ G + +A+ +FD ++  DV  W+ MI      GL  +A  +  
Sbjct: 155 FHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLR 214

Query: 132 KMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGR 190
            M +  V P  I  + +    +    ++ G+    + MR+    +  +    A++D+  +
Sbjct: 215 DMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVK 274

Query: 191 AGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             ++  A  +   ++ +  ++ W A+++A
Sbjct: 275 CENLAYARRVFDGLS-KASIISWTAMIAA 302



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+D+  WN+MI GF  +   + AL  F EM +  V P+  TF   ++ C+  G L     
Sbjct: 492 DRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKR 551

Query: 63  V-HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIH 120
           + H ++ E            ++D+  + G +  A E+  ++  R +++V+ + ++   +H
Sbjct: 552 LFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLH 611


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  364 bits (935), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 178/413 (43%), Positives = 260/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D+V++N+MIGG+  +    EAL+ F  +    ++PDK T+ +++  CA  G+L  A
Sbjct: 490 MIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWA 549

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L+ +     +  +  AL+  Y+KCG    A  VF+ + + +V  WNA+I G A H
Sbjct: 550 REIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQH 609

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA  +F +M+M  V PD +TF+ LL+ACSH GL+EEGR+YF  M   ++I P +EH
Sbjct: 610 GRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEH 669

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG MVDLLGRAG ++EA  LI +M  + +  +W ALL ACR    + + E A  +  +L 
Sbjct: 670 YGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLD 729

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             +   YV LS+MY     WD+A  +R++M+++GV K  G+SW+++   +H F A DRSH
Sbjct: 730 LDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRSH 789

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+++ I   L  L    K +G++P T  V+ DV E EKE  + HHSE+LA+AYG++ T P
Sbjct: 790 PQSEKIYAELDRLTHAMKMKGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTPP 849

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT I I KNLR+C DCH+  K IS+++ R II RD  RFH F+ G+CSCGDYW
Sbjct: 850 GTRIHIFKNLRVCPDCHTATKFISKIVDREIIARDVNRFHHFKDGVCSCGDYW 902



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 140/291 (48%), Gaps = 47/291 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KDV+SW +MIGG  ++    EAL  ++EM  + VEP++ T+ S++  C+   AL   
Sbjct: 389 MVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWG 448

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  ++E  +  +  +   L++MYS CG ++ A++VFD + + D+  +NAMI G A H
Sbjct: 449 RRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAH 508

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK----------------- 163
            L  +A  +F +++   + PD +T++ +L AC++ G +E  R+                 
Sbjct: 509 NLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVG 568

Query: 164 ------------------YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
                              F+ M  R  I      + A++    + G  ++A  L   M 
Sbjct: 569 NALVSTYAKCGSFSDASIVFEKMTKRNVIS-----WNAIIGGSAQHGRGQDALQLFERMK 623

Query: 206 ME---PDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCY 253
           ME   PD+V + +LLSAC     LE G     ++S+    D+ ++  +  Y
Sbjct: 624 MEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQ----DFAIIPTIEHY 670



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 123/265 (46%), Gaps = 47/265 (17%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++D+++WN+MIGG      ++EA   + +M    V P+K T+  ++  C    AL+    
Sbjct: 290 NRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKE 349

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+ + +     +  +  ALI MYS+CG I+ A+ VFD + R DV  W AMI G+A  G 
Sbjct: 350 IHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGF 409

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSH---------------------------- 154
            A+A  ++ +M+   V P+ +T+  +L ACS                             
Sbjct: 410 GAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNT 469

Query: 155 -------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI--EEAYGLITSMT 205
                  CG V++ R+ FD M     IQ  +  Y AM+   G A H   +EA  L   + 
Sbjct: 470 LVNMYSMCGSVKDARQVFDRM-----IQRDIVAYNAMIG--GYAAHNLGKEALKLFDRLQ 522

Query: 206 ME---PDVVVWRALLSACRTFKRLE 227
            E   PD V +  +L+AC     LE
Sbjct: 523 EEGLKPDKVTYINMLNACANSGSLE 547



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 124/267 (46%), Gaps = 43/267 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K VVSW   IGG+    R + A   F++M    V P++ T+ SV+   +   AL   
Sbjct: 187 MEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWG 246

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ I+    E +  +  AL+ MY+KCG  +  ++VF+ +   D+  WN MI G+A  
Sbjct: 247 KAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEG 306

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTAC---------------------------- 152
           G   +AS ++ +M+   V+P+ IT++ LL AC                            
Sbjct: 307 GYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQ 366

Query: 153 -------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
                  S CG +++ R  FD M     ++  +  + AM+  L ++G   EA  +   M 
Sbjct: 367 NALISMYSRCGSIKDARLVFDKM-----VRKDVISWTAMIGGLAKSGFGAEALTVYQEMQ 421

Query: 206 ---MEPDVVVWRALLSACRTFKRLELG 229
              +EP+ V + ++L+AC +   LE G
Sbjct: 422 QAGVEPNRVTYTSILNACSSPAALEWG 448



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 121/266 (45%), Gaps = 43/266 (16%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++ V SWN+M+ G+++    ++AL+  R+M    + PD+ T  S +  C   GAL     
Sbjct: 88  ERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGRE 147

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H   ++  +  +  ++  +++MY+KCG I+ A+EVFD +++  V  W   I G A  G 
Sbjct: 148 IHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGR 207

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACS----------------------------- 153
           +  A  IF KME   V+P+ IT++ +L A S                             
Sbjct: 208 SETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTA 267

Query: 154 ------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME 207
                  CG  ++ R+ F+ + +R      L  +  M+  L   G+ EEA  +   M  E
Sbjct: 268 LVKMYAKCGSYKDCRQVFEKLVNR-----DLIAWNTMIGGLAEGGYWEEASEVYNQMQRE 322

Query: 208 ---PDVVVWRALLSACRTFKRLELGE 230
              P+ + +  LL+AC     L  G+
Sbjct: 323 GVMPNKITYVILLNACVNSAALHWGK 348



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 92/194 (47%), Gaps = 6/194 (3%)

Query: 23  DEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAAL 82
           D A+   + +     + +   +  ++  C  +  L     VH  II+ +   +     AL
Sbjct: 5   DGAVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNAL 64

Query: 83  IDMYSKCGKIQMAKEVFDTVQRNDVSV--WNAMISGVAIHGLAADASAIFTKMEMFNVLP 140
           I+MY +CG I+ A++V+  +   + +V  WNAM+ G   +G    A  +  +M+   + P
Sbjct: 65  INMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAP 124

Query: 141 DSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199
           D  T +  L++C   G +E GR+ +F  M++      ++ +   ++++  + G IEEA  
Sbjct: 125 DRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVAN--CILNMYAKCGSIEEARE 182

Query: 200 LITSMTMEPDVVVW 213
           +   M  +  VV W
Sbjct: 183 VFDKME-KKSVVSW 195


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  364 bits (935), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 177/413 (42%), Positives = 263/413 (63%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M   +++ WN+MI G+ +N    EA+  F EM++  V PD  +  S I  CA++G+L  A
Sbjct: 283 MKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQA 342

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             ++  +       +  +S+ALIDM++KCG ++ A+ VFD     DV VW+AMI G  +H
Sbjct: 343 RSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLH 402

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +A +++  ME   V P+ +TFLGLL AC+H G+V EG  +F+ M + + I PQ +H
Sbjct: 403 GRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLM-ADHKINPQQQH 461

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  ++DLLGRAGH+++AY +I  M ++P V VW ALLSAC+  + +ELGE A   + +I 
Sbjct: 462 YACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSID 521

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YV LSN+Y   + WD    VR  MK+KG+ K  G SW+E+ G +  F+ GD+SH
Sbjct: 522 PSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSH 581

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + I++ +  +  R K  GF+   +  L D+++EE E  L  HSE++A+AYG++ T  
Sbjct: 582 PRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQ 641

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT +RI+KNLR C +CH+  K+IS+L+ R I+VRD  RFH F+ G+CSCGDYW
Sbjct: 642 GTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 121/217 (55%), Gaps = 2/217 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P++ +VSW +++  + +N    EAL  F  M    V+PD     SV+     L  L   
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQG 241

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++  +E+   L  +L  MY+KCG++  AK +FD ++  ++ +WNAMISG A +
Sbjct: 242 RSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKN 301

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +A  +F +M   +V PD+I+    ++AC+  G +E+ R  ++++  R   +  +  
Sbjct: 302 GYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYV-GRSDYRDDVFI 360

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             A++D+  + G +E A  L+   T++ DVVVW A++
Sbjct: 361 SSALIDMFAKCGSVEGAR-LVFDRTLDRDVVVWSAMI 396



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 123/290 (42%), Gaps = 47/290 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P   +  WN++I G+ RN  F +AL  +  M  ++V PD FTF  ++  C+ L  L   
Sbjct: 79  LPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMG 138

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV---QRNDVSVWNAMISGV 117
            +VH  +     + +  +   LI +Y+KC ++  A+ VF+ +   +R  VS W A++S  
Sbjct: 139 RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVS-WTAIVSAY 197

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA--C----------------------- 152
           A +G   +A  IF+ M   +V PD +  + +L A  C                       
Sbjct: 198 AQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEP 257

Query: 153 ----------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
                     + CG V   +  FD M+S     P L  + AM+    + G+  EA  +  
Sbjct: 258 DLLISLNTMYAKCGQVATAKILFDKMKS-----PNLILWNAMISGYAKNGYAREAIDMFH 312

Query: 203 SMT---MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSN 249
            M    + PD +   + +SAC     LE        + R    D V +S+
Sbjct: 313 EMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISS 362



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 8/188 (4%)

Query: 34  SSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQ 93
           +S +  D F +AS+I        L     +H  ++   ++ +  L   LI   S  G I 
Sbjct: 15  NSGIHSDSF-YASLIDSATHKAQLKQ---IHARLLVLGLQFSGFLITKLIHASSSFGDIT 70

Query: 94  MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
            A++VFD + R  +  WNA+I G + +    DA  +++ M++  V PDS TF  LL ACS
Sbjct: 71  FARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACS 130

Query: 154 HCGLVEEGRKYFDHMRS-RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM-EPDVV 211
               ++ GR  F H +  R      +     ++ L  +   +  A  +   + + E  +V
Sbjct: 131 GLSHLQMGR--FVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIV 188

Query: 212 VWRALLSA 219
            W A++SA
Sbjct: 189 SWTAIVSA 196


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  364 bits (935), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 176/414 (42%), Positives = 254/414 (61%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  KD+V+W SM+  F  N    EA+  F +ML++ ++PD      ++   A L +L   
Sbjct: 526 LDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKG 585

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +I  K  +   + ++L+DMYS CG +  A +VFD  +  DV +W AMI+   +H
Sbjct: 586 KEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMH 645

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  IF +M    V PD ++FL LL ACSH  LV+EG+ Y D M S+Y +QP  EH
Sbjct: 646 GHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEH 705

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  +VDLLGR+G  EEAY  I SM +EP  VVW ALL ACR  K  EL  +A   +  L 
Sbjct: 706 YACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELE 765

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G+YVL+SN++  + +W+  + +R  M ++G+RK    SW+E+   +H F A D SH
Sbjct: 766 PDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSH 825

Query: 298 PEAQAIDKILGSLIQRTKSEG-FLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
            ++QAI   L  + ++ + EG ++  T  VL DVSEEEK   L+ HSE+LA+++G++ T+
Sbjct: 826 RDSQAIHLKLAEITEKLRREGQYVEDTSFVLHDVSEEEKIDLLHRHSERLAISFGLISTA 885

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            GT +RI+KNLR+C DCH + K++S+L  R I+VRD  RFH F GG CSCGD+W
Sbjct: 886 SGTPLRIAKNLRVCGDCHEFTKLVSKLFEREIVVRDANRFHHFSGGTCSCGDFW 939



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 117/217 (53%), Gaps = 5/217 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD VSW ++I  + +++R+ EA+  FR      ++ D     S++  C+ L +++    V
Sbjct: 429 KDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQV 488

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H+  I   + L+ IL   +ID+Y +CG++  A  +F+ + + D+  W +M++  A +GL 
Sbjct: 489 HSYAIRNGL-LDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLL 547

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLEHYG 182
            +A A+F KM    + PDS+  +G+L A +    + +G++    + R ++ ++  +    
Sbjct: 548 HEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAV--VS 605

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++VD+    G +  A  +      + DVV+W A+++A
Sbjct: 606 SLVDMYSGCGSMNYALKVFDEAKCK-DVVLWTAMINA 641



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 81/160 (50%), Gaps = 1/160 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +DV SWNS I G V+N  F EAL  FR M S     + +T   V+  CA L  LNH   +
Sbjct: 228 RDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGREL 287

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +++   E N I   AL+ MY++CG +  A  VF  +   D   WN+M+S    + L 
Sbjct: 288 HAALLKCGTEFN-IQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLY 346

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
           A+A   F +M      PD    + LL+A  H G +  GR+
Sbjct: 347 AEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGRE 386



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 118/234 (50%), Gaps = 15/234 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK----VEPDKFTFASVIYGCARLGA 56
           MP + V SWN++IG  + +    EA+  +R M +S+      PD  T ASV+  C   G 
Sbjct: 119 MPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGD 178

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN-DVSVWNAMIS 115
                 VH L ++  ++ + +++ AL+ MY+KCG +  A  VF+ ++   DV+ WN+ IS
Sbjct: 179 GRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAIS 238

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM---RSRY 172
           G   +G+  +A  +F +M+      +S T +G+L  C+    +  GR+    +    + +
Sbjct: 239 GCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEF 298

Query: 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRL 226
           +IQ       A++ +  R G ++ A  +   +  + D + W ++LS C    RL
Sbjct: 299 NIQCN-----ALLVMYARCGWVDSALRVFREIG-DKDYISWNSMLS-CYVQNRL 345



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 107/222 (48%), Gaps = 15/222 (6%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           DKD +SWNSM+  +V+N  + EA+ FF EM+ +   PD     S++     LG L +   
Sbjct: 327 DKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGRE 386

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH   ++++++ +  ++  L+DMY KC  ++ +  VFD ++  D   W  +I+  A    
Sbjct: 387 VHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSR 446

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS--RYSIQPQLEH 180
            ++A   F   +   +  D +    +L ACS       G K    ++    Y+I+  L  
Sbjct: 447 YSEAIGKFRTAQKEGIKVDPMMMGSILEACS-------GLKSISLLKQVHSYAIRNGLLD 499

Query: 181 Y---GAMVDLLGRAGHIEEAYGL-ITSMTMEPDVVVWRALLS 218
                 ++D+ G  G  E  Y L I  M  + D+V W ++++
Sbjct: 500 LILKNRIIDIYGECG--EVCYALNIFEMLDKKDIVTWTSMVN 539



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 9/150 (6%)

Query: 77  ILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME-- 134
            L+  L+ MY KCG++  A  +FD +    V  WNA+I      G A +A  ++  M   
Sbjct: 94  FLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRAS 153

Query: 135 --MFNVLPDSITFLGLLTACSHCGLVEEGR--KYFDHMRSRYSIQPQLEHYGAMVDLLGR 190
             +    PD  T   +L A   CG   +GR       +  +  +        A+V +  +
Sbjct: 154 EPVAGAAPDGCTLASVLKA---CGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAK 210

Query: 191 AGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
            G ++ A  +   M    DV  W + +S C
Sbjct: 211 CGLLDSALRVFEWMRDGRDVASWNSAISGC 240


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  364 bits (935), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 184/415 (44%), Positives = 262/415 (63%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KDV+SWN++IGG+     + EAL  F+EML S   P+  T  S++  CA LGA++  
Sbjct: 327 LPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG 386

Query: 61  YWVHNLIIE--KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
            W+H  I +  K +     L  +LIDMY+KCG I+ A +VF+++    +S WNAMI G A
Sbjct: 387 RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFA 446

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG A  +  +F++M    + PD ITF+GLL+ACSH G+++ GR  F  M   Y + P+L
Sbjct: 447 MHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKL 506

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           EHYG M+DLLG +G  +EA  +I  M MEPD V+W +LL AC+    +ELGE    N+ +
Sbjct: 507 EHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIK 566

Query: 239 L---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           +     G YVLLSN+Y    RW+     R ++  KG++K  G S +E+  V+H+F  GD+
Sbjct: 567 IEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDK 626

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
            HP  + I  +L  +    +  GF+P T  VL ++ EE KEG L HHSEKLA+A+G++ T
Sbjct: 627 FHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLIST 686

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            PGT++ I KNLR+C +CH   K+IS++ +R II RDR RFH F  G+CSC DYW
Sbjct: 687 KPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 134/290 (46%), Gaps = 43/290 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KDVVSWN+MI G+     + EAL  F++M+ + V PD+ T  +V+  CA+ G++   
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 285

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  I +     N  +  ALID+YSKCG+++ A  +F+ +   DV  WN +I G    
Sbjct: 286 RQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHM 345

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---KYFDHMRSRYSIQPQ 177
            L  +A  +F +M      P+ +T L +L AC+H G ++ GR    Y D      +    
Sbjct: 346 NLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASS 405

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMT-------------------------------- 205
           L    +++D+  + G IE A+ +  S+                                 
Sbjct: 406 LR--TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRK 463

Query: 206 --MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCY 253
             ++PD + +  LLSAC     L+LG     +I R M  DY +   +  Y
Sbjct: 464 IGIQPDDITFVGLLSACSHSGMLDLGR----HIFRTMTQDYKMTPKLEHY 509



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 114/247 (46%), Gaps = 35/247 (14%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + +++ WN+M  G   ++    AL+ +  M+S  + P+ +TF  V+  CA+  A      
Sbjct: 96  EPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQ 155

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT--------------------- 101
           +H  +++   +L+  +  +LI MY + G+++ A +VFD                      
Sbjct: 156 IHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGY 215

Query: 102 ----------VQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
                     +   DV  WNAMISG A  G   +A  +F  M   NV PD  T + +++A
Sbjct: 216 IENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSA 275

Query: 152 CSHCGLVEEGRKYFDHM-RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
           C+  G +E GR+   H+    +     L+   A++DL  + G +E A GL   +  + DV
Sbjct: 276 CAQSGSIELGRQV--HLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYK-DV 332

Query: 211 VVWRALL 217
           + W  L+
Sbjct: 333 ISWNTLI 339



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 31/158 (19%)

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           +  A  VF T+Q  ++ +WN M  G A+      A  ++  M    +LP+S TF  +L +
Sbjct: 84  LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKS 143

Query: 152 CSHCGLVEEGRKYFDH---------------MRSRYSIQPQLE---------------HY 181
           C+     +EG++   H               + S Y    +LE                Y
Sbjct: 144 CAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSY 203

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            A++      G+IE A  L   + ++ DVV W A++S 
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIPVK-DVVSWNAMISG 240


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  364 bits (935), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 184/413 (44%), Positives = 257/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K+VVSW +M+ GF +N   ++AL  F  ML     P+ +T  S +  CA++GAL+  
Sbjct: 267 MPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAG 326

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +HN +     +LN ++  AL+DMY+KCG I+ A++VF   +   + +W+ MI G AIH
Sbjct: 327 LRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIH 386

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A   F  M+     PDS+ FL +L ACSH G V EG K+FD+MR  Y I+P ++H
Sbjct: 387 GHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKH 446

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  +VD+LGRAG ++EA   I +M + PD VVW AL  ACRT K +E+ E+A   ++ + 
Sbjct: 447 YTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLE 506

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YV LSN Y  + RWD AE VR  M+  G  K  G S++E+   +H+F AGD +H
Sbjct: 507 PKHPGSYVFLSNAYASVGRWDDAERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTH 566

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
             A  I   L  +    + +G+    E VL ++ EEEKE  L +HSEKLALA+GI+ T P
Sbjct: 567 NRAVEIYSKLDEISASAREKGYTKEIECVLHNIEEEEKEEALGYHSEKLALAFGIVSTRP 626

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT +RI KNLR+C DCHS++K  S++ +R II+RD  RFH F  G+CSCGDYW
Sbjct: 627 GTTVRIVKNLRVCVDCHSFMKYASKMSKREIILRDMKRFHHFNDGVCSCGDYW 679



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 113/280 (40%), Gaps = 68/280 (24%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K+   +N++I G   N+RF+ ++ FF  ML  K+ PD+ TF  V+   A L        +
Sbjct: 103 KNSYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRAL 162

Query: 64  HNLIIEKKIELNFILSAALIDMYSKC---------------------------------- 89
           H  I++  +E +  +  +L+DMY K                                   
Sbjct: 163 HCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCR 222

Query: 90  -GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVL--------- 139
            G +  A E+FD++ + D   WN++I+G    G    A  +F KM   NV+         
Sbjct: 223 MGDLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGF 282

Query: 140 ----------------------PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
                                 P+  T +  L+AC+  G ++ G +  +++ S    +  
Sbjct: 283 SQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYL-SGNGFKLN 341

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           L    A+VD+  + G+IE A  +    T E  +++W  ++
Sbjct: 342 LVIGTALVDMYAKCGNIEHAEKVFHE-TKEKGLLIWSVMI 380


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  364 bits (934), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 175/413 (42%), Positives = 263/413 (63%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD+V+   MI G+    + +E+   F +M      PDK    +++  CA+LGA+N A
Sbjct: 162 MPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKA 221

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ +  ++  L+  L  A+IDMY+KCG I  ++E+FD +++ +V  W+AMI     H
Sbjct: 222 RLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYH 281

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F  M    ++P+ ITF+ LL ACSH GLV++G + F  M   Y ++P ++H
Sbjct: 282 GQGREALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKH 341

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  MVDLLGRAG +++A  LI +M +E D  +W A L ACR  ++++L E A   ++++ 
Sbjct: 342 YTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQ 401

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y+LLSN+Y    RW     +R +M K+ ++K  G +W+E+  +I++F AGD SH
Sbjct: 402 TQNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSH 461

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
             +  I ++L SL Q+ +S G++P T  VL DV EE K G L+ HSEKLA+A+G++ T  
Sbjct: 462 LRSNEIYEMLKSLSQKLESAGYVPDTNSVLHDVDEEVKLGILHAHSEKLAIAFGLIATPD 521

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IRI+KNLR+C DCHS+ K++S + +R IIVRD  RFH F+ G+CSCGDYW
Sbjct: 522 GTPIRITKNLRVCGDCHSFCKLVSAITQRDIIVRDANRFHHFKEGICSCGDYW 574



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 122/220 (55%), Gaps = 4/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D VSW+ MIGGFV+N  ++   + FRE++ +  +PD F+   VI  C     L   
Sbjct: 61  MEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMG 120

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ +++  + L+  + + L+DMY+KCG I  AK++FD + + D+     MI+G A  
Sbjct: 121 RLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAEC 180

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLE 179
           G   ++  +F +M     +PD +  + ++ AC+  G + + R   D++ + RYS+  +L 
Sbjct: 181 GKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELG 240

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              AM+D+  + G I+ +  +   M  + +V+ W A++ A
Sbjct: 241 --TAMIDMYAKCGSIDSSREIFDRME-QKNVISWSAMIGA 277


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  364 bits (934), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 173/409 (42%), Positives = 259/409 (63%), Gaps = 3/409 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D V+W SMI G V N   D+ALR +  M  S+V PD++TFA++I   + + AL     +H
Sbjct: 95  DDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLH 154

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             +I+     +  +  +L+DMY+KCG I+ A  +F  +   ++++WNAM+ G+A HG A 
Sbjct: 155 ANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAE 214

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           +A  +F  M+   + PD ++F+G+L+ACSH GL  E  +Y   M + Y I+P++EHY  +
Sbjct: 215 EAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCL 274

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD- 243
           VD LGRAG ++EA  +I +M  +    + RALL ACR    +E G+     +  L   D 
Sbjct: 275 VDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVEXGKRVAARLFALEPFDS 334

Query: 244 --YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
             YVLLSN+Y    RWD   + R++MK+K V+K  G SW+++  ++H F   DRSHP+A 
Sbjct: 335 AAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQAD 394

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
            I   +  +++  + +G++P TE VL+DV +EEKE +LY+HSEKLA+AYG++ T   T I
Sbjct: 395 IIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTI 454

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           R+ KNLR+C DCH+ IK IS++  R I++RD  RFH F  G+CSCGDYW
Sbjct: 455 RVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 503



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 2/206 (0%)

Query: 12  MIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKK 71
           M+ G++      +AL  F  +  S  + D+ T A+    C  L  L+    +H   I+  
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG 60

Query: 72  IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFT 131
            + +  +++ ++DMY KCG +  A  VF+ +   D   W +MISG   +G    A  I+ 
Sbjct: 61  FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYH 120

Query: 132 KMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRA 191
           +M    V+PD  TF  L+ A S    +E+GR+   ++     +        ++VD+  + 
Sbjct: 121 RMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG-TSLVDMYAKC 179

Query: 192 GHIEEAYGLITSMTMEPDVVVWRALL 217
           G+IE+AY L   M +  ++ +W A+L
Sbjct: 180 GNIEDAYRLFKKMNVR-NIALWNAML 204



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY-W 62
           +++  WN+M+ G  ++   +EA+  F+ M S  +EPD+ +F  ++  C+  G  + AY +
Sbjct: 195 RNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEY 254

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIHG 121
           +H++  +  IE      + L+D   + G +Q A +V +T+  +   S+  A++    I G
Sbjct: 255 LHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQG 314


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  364 bits (934), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 174/413 (42%), Positives = 248/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++VVSWN MI G+ +N    +       M +   +PD+ T  +++  C  L  L   
Sbjct: 456 MPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERG 515

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   ++  +E + +++ +LI MYSKCG++  A+ VFD +   D   WNAM++G   H
Sbjct: 516 KLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQH 575

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M    V P+ IT   +++ACS  GLV+EGR+ F  M+  + + P+ +H
Sbjct: 576 GDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQH 635

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDLLGRAG ++EA   I SM  EPD+ VW ALL AC++   ++L E A   I+ + 
Sbjct: 636 YGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELE 695

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 Y+ LSN+Y    RWD +  VR +M  +G++K +G+S +E+ G IH F A D +H
Sbjct: 696 PSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVAEDCAH 755

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE  AI   L +L +  K  G+ P    VL DV + +KE  L HHSEKLA+AYG+LKT  
Sbjct: 756 PEIDAIHAELETLTKEMKEAGYTPDMRFVLHDVDDVQKEKALCHHSEKLAIAYGLLKTPS 815

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IRI KNLR+C DCH+  K IS++ +R I+ RD  RFH F  G CSCGD+W
Sbjct: 816 GTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFNNGTCSCGDFW 868



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 120/223 (53%), Gaps = 7/223 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++VVSW ++I    ++ + +EA   + +ML + + P+  TF S++  C    ALN  
Sbjct: 218 MTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRG 277

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ I E+ +E + I++ ALI MY KC  +Q A+E+FD + + DV  W+AMI+G A  
Sbjct: 278 RRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQS 337

Query: 121 GLAADAS-----AIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           G     S      +  +M    V P+ +TF+ +L AC+  G +E+GR+    + S+   +
Sbjct: 338 GYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAEL-SKVGFE 396

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
                  A+ ++  + G I EA  + + M    +VV W + LS
Sbjct: 397 LDRSLQTAIFNMYAKCGSIYEAEQVFSKMA-NKNVVAWTSFLS 438



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 114/219 (52%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVV+W+SMI  +  N    +A   F  M  + +EP++ TF S++  C     L   
Sbjct: 117 MTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKG 176

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H ++    +E +  ++ ALI MYSKCG+I +A EVF  +   +V  W A+I   A H
Sbjct: 177 RKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQH 236

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A  ++ +M    + P+++TF+ LL +C+    +  GR+   H+  R  ++  +  
Sbjct: 237 RKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISER-GLETDMIV 295

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++ +  +   ++EA  +   M+ + DV+ W A+++ 
Sbjct: 296 ANALITMYCKCNSVQEAREIFDRMS-KRDVISWSAMIAG 333



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 157/360 (43%), Gaps = 54/360 (15%)

Query: 4   KDVVSWNSMIGGFV----RNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           K++    S+ GG V    +  R  EA++    +    +  +  T+  VI  CA+      
Sbjct: 15  KELDGPTSVSGGEVWRLCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFED 74

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              VH  + E  +E++  L  +LI+ YSK   +  A++VF  +   DV  W++MI+  A 
Sbjct: 75  GKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAG 134

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +   A A   F +M   N+ P+ ITFL +L AC++  ++E+GRK    +++   ++  + 
Sbjct: 135 NNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKA-MGMETDVA 193

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMT---------------------------------- 205
              A++ +  + G I  A  +   MT                                  
Sbjct: 194 VATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAG 253

Query: 206 MEPDVVVWRALLSACRTFKRLELGEVAIVNIS-RLMGGDYVL---LSNMYCYLKRWDTAE 261
           + P+ V + +LL++C T + L  G     +IS R +  D ++   L  MYC   + ++ +
Sbjct: 254 ISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYC---KCNSVQ 310

Query: 262 NVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLP 321
             REI  +  + K    SW  +     Q    D+     ++ID++   L++R + EG  P
Sbjct: 311 EAREIFDR--MSKRDVISWSAMIAGYAQSGYKDK-----ESIDEVF-QLLERMRREGVFP 362


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  364 bits (934), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 182/414 (43%), Positives = 252/414 (60%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           MP +++VSWN+++ G+V+N+R D+ALR F+ M+  S V+P+  T +SV+ GC+ L AL  
Sbjct: 197 MPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGF 256

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              VH   ++  +  N  +  +L+ MY KCG +  A +VFD +   D+  WNAMISG A 
Sbjct: 257 GRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQ 316

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG    A  +F KM+   V+PD IT L +LTAC H GL + G + F+ M+  Y I+PQ++
Sbjct: 317 HGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQID 376

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HY  MVDLL RAG +E A  +I SM  EP    +  LL+ACR +K LE  E A   ++  
Sbjct: 377 HYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQ 436

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YV L+N+Y    +W     VR  MK   V K+ G SW+E+ GV H+F++ DR 
Sbjct: 437 DPQNAGAYVQLANIYAVANKWADVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRL 496

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+   I   L  L    K+ G++P  +  L DV +  K   L  HSEKLA+A+G++ TS
Sbjct: 497 HPQLGLIHDKLDRLQMLMKAMGYVPDLDFALHDVEDSLKSQMLMRHSEKLAIAFGLISTS 556

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PG  +RI KNLRIC DCH+  K+IS++  R II+RD  RFH F GG CSCGDYW
Sbjct: 557 PGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 610



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 102/219 (46%), Gaps = 10/219 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KDV SWN+M+ G  +N   +EA   FR M       +  ++ +++   A  G +  A
Sbjct: 103 MPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVR----NAVSWNAMVAALACSGDMGAA 158

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
               +L      + + IL  A++  Y   G +Q A E F  +   ++  WNA+++G   +
Sbjct: 159 ---EDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKN 215

Query: 121 GLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
             A DA  +F  M E   V P++ T   +L  CS+   +  GR+       +  +   + 
Sbjct: 216 SRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCM-KLPLSRNVT 274

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
              +++ +  + G + +A  +   M+ + D+V W A++S
Sbjct: 275 VGTSLLSMYCKCGDLNDACKVFDEMSTK-DIVAWNAMIS 312



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 108/277 (38%), Gaps = 59/277 (21%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP- 140
           L+  +  CG I  A+ VF T+   DV+ WN M+SG++ +G + +A+A+F  M + N +  
Sbjct: 83  LLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVRNAVSW 142

Query: 141 ---------------------------DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
                                      D+I +  +++     G V++  ++F  M  R  
Sbjct: 143 NAMVAALACSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVR-- 200

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT----MEPDVVVWRALLSACRTFKRLELG 229
               L  + A+V    +    ++A  +  +M     ++P+     ++L  C     L  G
Sbjct: 201 ---NLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFG 257

Query: 230 E-----VAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELA 284
                    + +SR +     LLS MYC     + A  V + M  K +      +W  + 
Sbjct: 258 RQVHQWCMKLPLSRNVTVGTSLLS-MYCKCGDLNDACKVFDEMSTKDI-----VAWNAMI 311

Query: 285 GVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLP 321
               Q   G       QAI      L ++ K EG +P
Sbjct: 312 SGYAQHGGG------MQAI-----KLFEKMKDEGVVP 337



 Score = 45.8 bits (107), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 13/145 (8%)

Query: 78  LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA-IHGLA--ADASAIFTKME 134
           LS   +    + G +  A+E F + Q    + +N +++G A   GL   ADA  +F  + 
Sbjct: 14  LSTVAVAAAVRRGDLAGAEEAFASTQLKTTTTYNCLLAGYAKASGLIRLADARRLFDSIP 73

Query: 135 MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194
                PD++++  LL+    CG ++  R+ F  M  +      +  +  MV  L + G  
Sbjct: 74  H----PDTVSYNTLLSCHFACGDIDGARRVFSTMPVK-----DVTSWNTMVSGLSKNGAS 124

Query: 195 EEAYGLITSMTMEPDVVVWRALLSA 219
           EEA  +   M +  + V W A+++A
Sbjct: 125 EEAAAMFRIMPVR-NAVSWNAMVAA 148


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  364 bits (934), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 173/409 (42%), Positives = 259/409 (63%), Gaps = 3/409 (0%)

Query: 5    DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
            D V+W SMI G V N   D+ALR +  M  S+V PD++TFA++I   + + AL     +H
Sbjct: 1172 DDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLH 1231

Query: 65   NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
              +I+     +  +  +L+DMY+KCG I+ A  +F  +   ++++WNAM+ G+A HG A 
Sbjct: 1232 ANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAE 1291

Query: 125  DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
            +A  +F  M+   + PD ++F+G+L+ACSH GL  E  +Y   M + Y I+P++EHY  +
Sbjct: 1292 EAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCL 1351

Query: 185  VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD- 243
            VD LGRAG ++EA  +I +M  +    + RALL ACR    +E G+     +  L   D 
Sbjct: 1352 VDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDS 1411

Query: 244  --YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
              YVLLSN+Y    RWD   + R++MK+K V+K  G SW+++  ++H F   DRSHP+A 
Sbjct: 1412 AAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQAD 1471

Query: 302  AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
             I   +  +++  + +G++P TE VL+DV +EEKE +LY+HSEKLA+AYG++ T   T I
Sbjct: 1472 IIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTI 1531

Query: 362  RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            R+ KNLR+C DCH+ IK IS++  R I++RD  RFH F  G+CSCGDYW
Sbjct: 1532 RVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 1580



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 106/215 (49%), Gaps = 2/215 (0%)

Query: 3    DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
            D D+  WN+M+ G++      +AL  F  +  S  + D+ T A+    C  L  L+    
Sbjct: 1069 DLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQ 1128

Query: 63   VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            +H   I+   + +  +++ ++DMY KCG +  A  VF+ +   D   W +MISG   +G 
Sbjct: 1129 IHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGN 1188

Query: 123  AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
               A  I+ +M    V+PD  TF  L+ A S    +E+GR+   ++     +        
Sbjct: 1189 EDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGT- 1247

Query: 183  AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
            ++VD+  + G+IE+AY L   M +  ++ +W A+L
Sbjct: 1248 SLVDMYAKCGNIEDAYRLFKKMNVR-NIALWNAML 1281



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 109/217 (50%), Gaps = 3/217 (1%)

Query: 5    DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARL-GALNHAYWV 63
            D++SWNSMI    +++  +E++  F ++L   ++PD FT ASV+  C+ L   LN +  +
Sbjct: 969  DLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQI 1028

Query: 64   HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
            H   ++     +  ++  LID+YSK GK++ A+ +F      D++ WNAM+ G  I    
Sbjct: 1029 HVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDG 1088

Query: 124  ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
              A  +F+ +       D IT      AC    L+++G++   H   +      L     
Sbjct: 1089 KKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHA-IKAGFDSDLHVNSG 1147

Query: 184  MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
            ++D+  + G +  A G++ +    PD V W +++S C
Sbjct: 1148 ILDMYIKCGDMVNA-GIVFNYISAPDDVAWTSMISGC 1183



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 102/224 (45%), Gaps = 32/224 (14%)

Query: 2   PDKDVVSWNSMIGGFV-----RNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA 56
           P++D+V+WN+++G +       +    E L  FR + +S     + T A V+  C   G 
Sbjct: 683 PERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGC 742

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
           L  A  VH   I+  +E +  +S AL+++YSKCG+++ A+ +FD ++  DV +WN M+ G
Sbjct: 743 LWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKG 802

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
               GL  +A  +F++     + PD  +   +L   S     +EG+   D          
Sbjct: 803 YVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNW-DEGKWLAD---------- 851

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
           Q++ Y A + L                    PDV  W   LS C
Sbjct: 852 QVQAYAAKLSLSDD----------------NPDVFCWNKKLSEC 879



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 98/218 (44%), Gaps = 7/218 (3%)

Query: 3    DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
            + DV  WN  +   +       A+  F  M    ++ D  T   V+   A    L     
Sbjct: 866  NPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQ 925

Query: 63   VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            VH + ++  ++ +  ++ +L++MYSK G    A+EVF+ ++  D+  WN+MIS  A   L
Sbjct: 926  VHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSL 985

Query: 123  AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE---GRKYFDHMRSRYSIQPQLE 179
              ++  +F  +    + PD  T   +L ACS   L++     R+   H     +I     
Sbjct: 986  EEESVNLFIDLLHEGLKPDHFTLASVLRACS--SLIDGLNISRQIHVHALKTGNIADSFV 1043

Query: 180  HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
                ++D+  ++G +EEA  L  +   + D+  W A++
Sbjct: 1044 -ATTLIDVYSKSGKMEEAEFLFQNKD-DLDLACWNAMM 1079



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 4    KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY-W 62
            +++  WN+M+ G  ++   +EA+  F+ M S  +EPD+ +F  ++  C+  G  + AY +
Sbjct: 1272 RNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEY 1331

Query: 63   VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIHG 121
            +H++  +  IE      + L+D   + G +Q A +V +T+  +   S+  A++    I G
Sbjct: 1332 LHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQG 1391



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 30/182 (16%)

Query: 57  LNHAYWVHNLIIEKKIELNFILSAA---------LIDMYSKCGKIQMAKEVFDTVQRNDV 107
           L  A   HNL++ K      ++S +         L+ MYSKCG +  A++VFDT    D+
Sbjct: 628 LRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDL 687

Query: 108 SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSI------TFLGLLTAC--SHCGLVE 159
             WNA++   A    + D +A    + +F +L  S+      T   +L  C  S C    
Sbjct: 688 VTWNAILGAYAASVDSNDGNAQ-EGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 746

Query: 160 EGRKYFDHMRSRYSIQPQLEH----YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRA 215
           EG          Y+I+  LE      GA+V++  + G + +A  L   M  E DVV+W  
Sbjct: 747 EGVH-------GYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMR-ERDVVLWNM 798

Query: 216 LL 217
           +L
Sbjct: 799 ML 800



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 93/220 (42%), Gaps = 27/220 (12%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++DVV WN M+ G+V+     EA + F E   S + PD+F+   ++ G + +   +  
Sbjct: 788 MRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVN-WDEG 846

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+                A  +  Y+   K+ ++ +        DV  WN  +S     
Sbjct: 847 KWL----------------ADQVQAYA--AKLSLSDD------NPDVFCWNKKLSECLWA 882

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A   F  M   N+  D++T L +L A +    +E G++    +  +  +   +  
Sbjct: 883 GDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHG-IAVKSGLDSDVSV 941

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
             ++V++  + G    A  +   M    D++ W +++S+C
Sbjct: 942 ANSLVNMYSKMGCAYFAREVFNDMK-HLDLISWNSMISSC 980


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  364 bits (934), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 187/414 (45%), Positives = 257/414 (62%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K + SWN+MI G+ +N   + A+  F++M +  V P+  T +S +  CA+LGAL+  
Sbjct: 383 MPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLG 442

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH +I  +K+ELN  +  ALIDMY KCG I  A+ +FD++   +V  WN MISG  +H
Sbjct: 443 KWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLH 502

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  A+A  ++  M   ++ P S TFL +L ACSH GLV+EG   F  M S Y I P +EH
Sbjct: 503 GQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEH 562

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEP-DVVVWRALLSACRTFKRLELGEVAIVNISRL 239
              MVDLLGRAG ++EA+ LI+          +W ALL AC   K  +L ++A   +  L
Sbjct: 563 CTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLFEL 622

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVLLSN+Y   K++  A  VR+  K + + K+ G + +E+    H F AGDR+
Sbjct: 623 EPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVFMAGDRA 682

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP++ AI   L  L  +    G+ P TE  L DV EEEKE  +  HSEKLA+A+G+L T 
Sbjct: 683 HPQSDAIYLYLEKLTAKMIEAGYRPDTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLNTE 742

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PGTEIRI KNLR+C DCH+  K+IS++ +R+I+VRD  RFH F  G+CSCGDYW
Sbjct: 743 PGTEIRIIKNLRVCLDCHNATKIISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 796



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 111/218 (50%), Gaps = 2/218 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M   D+V++N++I G+  N     ++  F+E++   + P   T  ++I   +  G    A
Sbjct: 282 MEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLA 341

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++  ++ N  +S AL  +Y +   +  A+  FD +    +  WNAMISG A +
Sbjct: 342 GCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQN 401

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL   A A+F +M+  NV P+ +T    L+AC+  G +  G K+   + +   ++  +  
Sbjct: 402 GLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLG-KWVHKIIANEKLELNVYV 460

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
             A++D+  + G I EA  +  SM  + +VV W  ++S
Sbjct: 461 MTALIDMYVKCGSIAEARCIFDSMDNK-NVVSWNVMIS 497



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 126/297 (42%), Gaps = 40/297 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLGALNH 59
           +P  D V WN+++ G   +    EAL  F  M  +  V PD  T ASV+   A +     
Sbjct: 184 VPSPDTVLWNTLLAGLSGS----EALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTM 239

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              VH    +  +  +  +   LI +Y+KCG ++ A+ +FD ++  D+  +NA+ISG +I
Sbjct: 240 GRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSI 299

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGL-----------LTACSHCGLVEEGRKY---- 164
           +G+   +  +F ++    + P S T + L           L  C H  +V+ G       
Sbjct: 300 NGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPV 359

Query: 165 -------------FDHMRSRYSIQPQ--LEHYGAMVDLLGRAGHIEEAYGLITSM---TM 206
                         D  R  +   P+  +E + AM+    + G  E A  L   M    +
Sbjct: 360 STALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNV 419

Query: 207 EPDVVVWRALLSACRTFKRLELGE--VAIVNISRLMGGDYVLLSNMYCYLKRWDTAE 261
            P+ +   + LSAC     L LG+    I+   +L    YV+ + +  Y+K    AE
Sbjct: 420 RPNPLTISSALSACAQLGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAE 476



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 21/215 (9%)

Query: 16  FVRNARFDEALRFFREMLSSKVEPDKFTFA----SVIYGCARLG------ALNHAYWVHN 65
           F+RN+          ++L     PD F+FA    S+   C+R G      A      +H 
Sbjct: 90  FLRNSLLRSLPTLRADLLFPS--PDSFSFAFAATSLASSCSRGGISPPSAASAALRPLHA 147

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
           L +      +  +++AL  +Y    +   A++VFD V   D  +WN +++G++     ++
Sbjct: 148 LAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLS----GSE 203

Query: 126 ASAIFTKME-MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH-YGA 183
           A   F +M    +V PDS T   +L A +       GR    H         Q EH    
Sbjct: 204 ALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCV--HAFGEKCGLAQHEHVVTG 261

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
           ++ L  + G +E A  L   M   PD+V + AL+S
Sbjct: 262 LISLYAKCGDMECARHLFDRME-GPDLVTYNALIS 295


>gi|224088870|ref|XP_002308572.1| predicted protein [Populus trichocarpa]
 gi|222854548|gb|EEE92095.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  364 bits (934), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 179/413 (43%), Positives = 256/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++DV+SWN+M+  +V N +  EAL  F+ M  S + PD+ T  +++   A+L  L H 
Sbjct: 21  MPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPDEATLVTMLSASAQLCLLEHG 80

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H++I    + +   +  AL+DMY+KCG I+ ++ +F+ + R DVS WN MI G+A H
Sbjct: 81  QSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFENMPRRDVSTWNVMICGLASH 140

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  DA  +F +     + P ++TF+G+L ACS  GLV+EGR YF  M   Y I+P++EH
Sbjct: 141 GLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKEGRHYFQMMTDSYGIEPEMEH 200

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDLLGRAG + EA  +I SM + PD V+W  +L ACR     ELGE     ++ + 
Sbjct: 201 YGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCACRIHGLAELGEKIGNRLIELD 260

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YV L+++Y   ++W+    VR +M ++   K  G S +E  G +H+F AG R H
Sbjct: 261 PTYDGHYVQLASIYANSRKWEDVVRVRRLMAERNTSKVAGWSLIEARGKVHRFVAGHREH 320

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            ++  I K+L  +  R  + G++P    VL D+ EEEKE  +  HSE+LA+A+G+L T P
Sbjct: 321 EQSLEIQKMLEIIETRLAAAGYVPNVSPVLHDIGEEEKENAIKVHSERLAIAFGLLVTGP 380

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G+ IRI KNLR+C DCH   KMISR+  R IIVRD  RFH F+ G CSC DYW
Sbjct: 381 GSCIRIVKNLRVCWDCHEVTKMISRVFEREIIVRDGSRFHHFKEGKCSCLDYW 433



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 2/132 (1%)

Query: 86  YSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145
           +++ G++ + +++FD +   DV  WN M+     +G   +A   F +M    ++PD  T 
Sbjct: 5   FARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPDEATL 64

Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
           + +L+A +   L+E G+     + S  S+   +    A++D+  + G IE++  L  +M 
Sbjct: 65  VTMLSASAQLCLLEHGQSIHSIIDS-LSLPMTISIGTALLDMYAKCGCIEQSRLLFENMP 123

Query: 206 MEPDVVVWRALL 217
              DV  W  ++
Sbjct: 124 RR-DVSTWNVMI 134


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  364 bits (934), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 178/414 (42%), Positives = 261/414 (63%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP  D+V+WN MI G+  N +F +A++ F  ML     P   T  SV+   + L  L   
Sbjct: 266 MPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKG 325

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H+ + +   EL+ IL  +LI+MY+KCG I+ A  VF  +Q+  V  W A+I G+ IH
Sbjct: 326 RWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIH 385

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G+A  A A+F +M    + P++I F+G+L AC+H GLV++GR+YFD M + Y I+P LEH
Sbjct: 386 GMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEH 445

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG +VD+L RAGH+EEA   I +M + P+ V+W +LL   R   ++++GE A   ++ ++
Sbjct: 446 YGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVA 505

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y+LLSNMY     W+   +VRE+M K+G RK  G S +E  G +H+F  GD SH
Sbjct: 506 PETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISH 565

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDV-SEEEKEGNLYHHSEKLALAYGILKTS 356
           P+ + I   +  + ++ K  G +P T  VL+ +  E+EKE  L +HSE+LA+A+G++   
Sbjct: 566 PQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLINVK 625

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PG  IRI KNLR+C+DCHS  K++S++  R IIVRD  RFH F+ G CSC DYW
Sbjct: 626 PGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 679



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 113/218 (51%), Gaps = 15/218 (6%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           + ++ WN++I  +V N    + +  F E++   + PD FT   VI GCARLG +     +
Sbjct: 76  RSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQI 134

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H L ++     +  +  +L++MYSKCG+I  A++VFD +   DV +WN++I G A  G  
Sbjct: 135 HGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCG-- 192

Query: 124 ADASAIFTKMEMFNVLP--DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
                I   +++F  +P  D+ ++  L+   S CG VE  RK FD M  R      L  +
Sbjct: 193 ----EIDIALQLFEEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCR-----NLVSW 243

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            AM++   ++G  + A  L   M +  D+V W  +++ 
Sbjct: 244 NAMINGYMKSGDFDSALELFYQMPIW-DLVTWNLMIAG 280



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 109/254 (42%), Gaps = 41/254 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M DKDVV WNS+I G+ R    D AL+ F EM     E D F++  ++ G ++ G +  A
Sbjct: 173 MIDKDVVLWNSLIDGYARCGEIDIALQLFEEM----PERDAFSWTVLVDGLSKCGKVESA 228

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                 + ++    N +   A+I+ Y K G    A E+F  +   D+  WN MI+G  ++
Sbjct: 229 ----RKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELN 284

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS---------- 170
           G   DA  +F  M      P   T + +L+A S   ++ +GR    +M            
Sbjct: 285 GQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILG 344

Query: 171 --------------------RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT---ME 207
                               R   + ++ H+ A++  LG  G    A  L   M    ++
Sbjct: 345 TSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLK 404

Query: 208 PDVVVWRALLSACR 221
           P+ +++  +L+AC 
Sbjct: 405 PNAIIFIGVLNACN 418



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 80/159 (50%), Gaps = 5/159 (3%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYS--KCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           +H   ++  I  +  +S+ L+ +YS  K   +  A+ +FD +QR  +  WN +I     +
Sbjct: 32  LHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVEN 91

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
             + D   +F ++ +   LPD+ T   ++  C+  G+V+EG++    +  +      +  
Sbjct: 92  QFSHDGIVLFHEL-VHEYLPDNFTLPCVIKGCARLGVVQEGKQ-IHGLALKIGFGSDVFV 149

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            G++V++  + G I+ A  +   M ++ DVV+W +L+  
Sbjct: 150 QGSLVNMYSKCGEIDCARKVFDGM-IDKDVVLWNSLIDG 187


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  363 bits (933), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 185/416 (44%), Positives = 259/416 (62%), Gaps = 9/416 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD+V W +MI  +  +    EALR F EM  S ++PD  T  SVI  C  LG L+ A WV
Sbjct: 310 KDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWV 369

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H       +E    +  ALI+MY+KCG +  A++VF+ +   +V  W++MI+  A+HG A
Sbjct: 370 HRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEA 429

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
           +D+ ++F +M+  NV P+ +TF+G+L  CSH GLVEEG+K F  M   Y+I P++EHYG 
Sbjct: 430 SDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGC 489

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---M 240
           MVDL GRA  + EA  +I SM M P+VV+W +L+SACR    LELGE+A   I +L    
Sbjct: 490 MVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPDH 549

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G  VL+SN+Y    RWD    +R IM+KK V K +G S ++L G  H+F  GD+ H ++
Sbjct: 550 DGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKRHKQS 609

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
             I   L  ++ + K  G++P    VL+DV EEEK+  +  HSEKLAL +G++      E
Sbjct: 610 NEIYTKLYEVVSKLKLAGYVPDGGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNKEKEEE 669

Query: 361 ------IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
                 IRI KNLR+C DCH++ K++S++    IIVRDR RFHR++ GLCSC DYW
Sbjct: 670 KGSCGVIRIVKNLRVCEDCHAFFKLVSKVYELEIIVRDRTRFHRYKDGLCSCRDYW 725



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 116/252 (46%), Gaps = 37/252 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVV+WN+MI  + R    DEA + F EM  S V PD+    +++  C R G + + 
Sbjct: 175 MSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYN 234

Query: 61  YWVHNLIIEKKIEL-------------------------------NFILSAALIDMYSKC 89
             +++ +IE  + +                               N  +S A++  YSK 
Sbjct: 235 RAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKA 294

Query: 90  GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
           G++  A+ +FD  +  D+  W  MIS  A      +A  +F +M    + PD +T L ++
Sbjct: 295 GRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVI 354

Query: 150 TACSHCGLVEEGR--KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME 207
           +AC + G +++ +    + H+    S+ P      A++++  + G ++ A  +   M   
Sbjct: 355 SACVNLGTLDKAKWVHRYTHLNGLESVLPI---DNALINMYAKCGGLDAARDVFEKMPTR 411

Query: 208 PDVVVWRALLSA 219
            +VV W ++++A
Sbjct: 412 -NVVSWSSMINA 422



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 105/230 (45%), Gaps = 2/230 (0%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P  + + +NS++    R+      + F++ +       D+ +F  ++   +++ AL    
Sbjct: 75  PLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGM 134

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H    +     +  +   L+DMY+ CG+I  A+ VFD + + DV  WN MI      G
Sbjct: 135 ELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFG 194

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
           L  +A  +F +M+  NV+PD +    +++AC   G +   R  +D +     ++      
Sbjct: 195 LLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIEN-DVRMDTHLL 253

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV 231
            A+V +   AG ++ A      M++  ++ V  A++S      RL+   V
Sbjct: 254 TALVTMYAGAGCMDMAMEFFRKMSVR-NLFVSTAMVSGYSKAGRLDDARV 302



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++VVSW+SMI  F  +    ++L  F +M    VEP++ TF  V+YGC+  G +   
Sbjct: 408 MPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEG 467

Query: 61  YWVH-NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             +  ++  E  I         ++D++ +   ++ A EV +++    +V +W +++S   
Sbjct: 468 KKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACR 527

Query: 119 IHG 121
           +HG
Sbjct: 528 VHG 530


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  363 bits (933), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 179/416 (43%), Positives = 261/416 (62%), Gaps = 6/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KD+V+W +M+ G+ +N R  EAL +F++M    +E D+ T A VI  CA+LGA+ HA
Sbjct: 235 LPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHA 294

Query: 61  YWVHNLIIEKKI--ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
            W+ ++          N ++ +ALIDMYSKCG    A +VF+ ++  +V  +++MI G A
Sbjct: 295 NWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYA 354

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG A  A  +F  M    + P+ +TF+G+L+ACSH GLVE+GR+ F  M   + + P  
Sbjct: 355 MHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSP 414

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           +HY  MVDLLGRAG +EEA  L+ +M MEP+  VW ALL ACR     ++ ++A   + +
Sbjct: 415 DHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFK 474

Query: 239 LMG---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLE-LAGVIHQFKAGD 294
           L     G+Y+LLSN+Y    RW+    +R+++++KG +K+ G SW E   G IH F AGD
Sbjct: 475 LEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGD 534

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
            +HP +  I + L  LI+R +S G+ P       D++++EKE  L  HSEKLALAYG+L 
Sbjct: 535 TTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLC 594

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T  G  I+I KN+RIC DCH+ +   S +  R IIVRD +RFH F  G CSCG++W
Sbjct: 595 TEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 94/229 (41%), Gaps = 33/229 (14%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH-NLI 67
           W +MI G+       E+  F+  M    V P  FTF+++   C     ++    VH   I
Sbjct: 110 WTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTI 169

Query: 68  IEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS------------------- 108
           +      +  +  ++ID+Y KCG +  A++VFD +   DV                    
Sbjct: 170 LIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESAS 229

Query: 109 ------------VWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
                        W AM++G A +G   +A   F KM+   +  D +T  G+++AC+  G
Sbjct: 230 GLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLG 289

Query: 157 LVEEGRKYFD-HMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
            V+      D   RS +     +    A++D+  + G  +EAY +   M
Sbjct: 290 AVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVM 338



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 78/185 (42%), Gaps = 8/185 (4%)

Query: 46  SVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE---VFDTV 102
           S+++ C     +     VH  II   +     +   LI M +K   + M      VF  V
Sbjct: 47  SILHDCTLFSQIKQ---VHAHIIRNGLSQCSYVLTKLIRMLTKV-DVPMGSYPLLVFGQV 102

Query: 103 QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR 162
              +  +W AMI G A+ GL ++++  +T+M    V P S TF  L  AC     ++ G+
Sbjct: 103 NYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGK 162

Query: 163 KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRT 222
           +              L    +M+DL  + G +  A  +   M+ E DVV W  L+ A   
Sbjct: 163 QVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMS-ERDVVSWTELIVAYAK 221

Query: 223 FKRLE 227
           +  +E
Sbjct: 222 YGDME 226


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  363 bits (933), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 181/413 (43%), Positives = 257/413 (62%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  K+ VSWN++I GF R    + AL  F EML +  E   FT++SV    ARLGAL   
Sbjct: 213 LDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQG 272

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH  +I+ + +L   +   L+DMY+K G +  A++VFD V   D+  WN+M++  A +
Sbjct: 273 KWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQY 332

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A + F +M    V  + ITFL +LTACSH GLV+EG++YF+ M+  Y ++P+++H
Sbjct: 333 GLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFEMMK-EYDLEPEIDH 391

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  +V LLGRAG +  A   I  M MEP   VW ALL+ACR  K  ++G+ A  ++  L 
Sbjct: 392 YVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELD 451

Query: 241 ---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G  VLL N+Y    +WD A  VR +MK  GV+K    SW+E+   +H F A D +H
Sbjct: 452 PDDSGPPVLLYNIYASTGQWDAAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTH 511

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+A+ I K+ G + ++ + EG++P  + VL+ V ++EKE NL +HSEKLALA+ +++   
Sbjct: 512 PQAEEIYKMWGEISKKIRKEGYVPDMDYVLLHVDDQEKEANLQYHSEKLALAFALIEMPA 571

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KN+RIC DCHS  K IS++  R I+VRD  RFH F  G CSCGDYW
Sbjct: 572 GATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSSGSCSCGDYW 624



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 120/240 (50%), Gaps = 7/240 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD+VSW S+I G+ +N    EA+     ML  + +P+ FTFAS++            
Sbjct: 112 MRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTG 171

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L ++     +  + +AL+DMY++CGK+ MA  VFD +   +   WNA+ISG A  
Sbjct: 172 RQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARK 231

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
           G    A   F +M          T+  + ++ +  G +E+G+    H ++SR  +   + 
Sbjct: 232 GDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVG 291

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           +   ++D+  ++G + +A  +   +    D+V W ++L+A   F +  LG+ A+ +   +
Sbjct: 292 N--TLLDMYAKSGSMIDARKVFDRVD-NKDLVTWNSMLTA---FAQYGLGKEAVSHFEEM 345



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 95/215 (44%), Gaps = 5/215 (2%)

Query: 26  LRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM 85
           LR    + + ++ P    + S I  CA+   L  A  +H  +   +   +  L  +LI M
Sbjct: 36  LRDLDLLDAGELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHM 95

Query: 86  YSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145
           Y KC  +  A+ VFD ++R D+  W ++I+G A + +  +A  +   M      P+  TF
Sbjct: 96  YCKCRSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTF 155

Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
             LL A         GR+    +  +      +    A++D+  R G ++ A  +   + 
Sbjct: 156 ASLLKAAGAYADSGTGRQ-IHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLD 214

Query: 206 MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
            + + V W AL+S    F R   GE A++  + ++
Sbjct: 215 SK-NGVSWNALISG---FARKGDGESALMTFAEML 245


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  363 bits (932), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 174/409 (42%), Positives = 258/409 (63%), Gaps = 4/409 (0%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           VV +N+MI G+ R  R +EAL  FREM    ++P++ T  SV+  CA LG+L+   W+H 
Sbjct: 195 VVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHK 254

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
              +        ++ ALIDM++KCG +  A  +F+ ++  D   W+AMI   A HG A  
Sbjct: 255 YAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEK 314

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           +  +F +M   NV PD ITFLGLL ACSH G VEEGRKYF  M S++ I P ++HYG+MV
Sbjct: 315 SMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMV 374

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMGG 242
           DLL RAG++E+AY  I  + + P  ++WR LL+AC +   L+L E     I  +    GG
Sbjct: 375 DLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGG 434

Query: 243 DYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQA 302
           DYV+LSN+Y   K+W+  +++R++MK +   K  G S +E+  V+H+F +GD        
Sbjct: 435 DYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTK 494

Query: 303 IDKILGSLIQRTKSEGFLPATELVL-MDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
           + + L  +++  K  G++P T +V+  +++++EKE  L +HSEKLA+ +G+L T PGT I
Sbjct: 495 LHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTI 554

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           R+ KNLR+C DCH+  K+IS +  R +++RD  RFH FE G CSCGD+W
Sbjct: 555 RVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 114/219 (52%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M + D+V +NSM  G+ R     E    F E+L   + PD +TF S++  CA   AL   
Sbjct: 89  MSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEG 148

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L ++  ++ N  +   LI+MY++C  +  A+ VFD +    V  +NAMI+G A  
Sbjct: 149 RQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARR 208

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A ++F +M+   + P+ IT L +L++C+  G ++ G K+      ++S    ++ 
Sbjct: 209 NRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG-KWIHKYAKKHSFCKYVKV 267

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++D+  + G +++A  +   M  + D   W A++ A
Sbjct: 268 NTALIDMFAKCGSLDDAVSIFEKMRYK-DTQAWSAMIVA 305



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 33/169 (19%)

Query: 95  AKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
           A+ +F+ +   D+ ++N+M  G +      +  ++F ++    +LPD+ TF  LL AC+ 
Sbjct: 82  ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141

Query: 155 CGLVEEGRKY----------------------------FDHMRSRYS--IQPQLEHYGAM 184
              +EEGR+                              D  R  +   ++P +  Y AM
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAM 201

Query: 185 VDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGE 230
           +    R     EA  L   M    ++P+ +   ++LS+C     L+LG+
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGK 250



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/120 (20%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD  +W++MI  +  + + ++++  F  M S  V+PD+ TF  ++  C+  G +      
Sbjct: 294 KDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKY 353

Query: 64  HNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS-VWNAMISGVAIHG 121
            + ++ K  I  +     +++D+ S+ G ++ A E  D +  +    +W  +++  + H 
Sbjct: 354 FSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHN 413


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  363 bits (932), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 185/413 (44%), Positives = 253/413 (61%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+++ V WN+MI G V+ + F++A+  FREM    ++ D+ T   +   C  LGA   A
Sbjct: 425 IPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELA 484

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH  I +  I  +  L+ AL+DM+++CG  Q A +VF+ +   DVS W A I  +A+ 
Sbjct: 485 KWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAME 544

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A+ +F +M +  V PD + F+ +LTACSH G VE+G   F  M   + I PQ+EH
Sbjct: 545 GNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMED-HGISPQIEH 603

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG MVDLLGRAG + EA+ LI SM MEP+ VVW +LL+ACR  K +E+   A   I+ L 
Sbjct: 604 YGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELA 663

Query: 241 ---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G +VLLSN+Y    +W     VR  +++KGVRK  G S +++ GVIH+F +GD SH
Sbjct: 664 PQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESH 723

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE   I  +L  +  R    G +P    VL+DV E+EKE  L  HSEKLA+A+G++ T  
Sbjct: 724 PEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGR 783

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IR+ KNLR+C DCHS+ KM S +  R IIVRD  RFH F  GLCSC DYW
Sbjct: 784 SMPIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 836



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 115/223 (51%), Gaps = 10/223 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++VVSW S+I G+ R  R  EA+  F EM+ + + P   T   VI  CA+L  L+  
Sbjct: 192 MSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMG 251

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V   I E  ++LN ++  AL+DMY KCG I  AK +FD     ++ ++N ++S  A  
Sbjct: 252 ERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQ 311

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GLA +A AI  +M      PD +T L  ++A +   LV+    ++  +   Y I+  LE 
Sbjct: 312 GLAREALAILDEMLQQGPRPDRVTMLSAISASAQ--LVD---LFYGKVCHGYVIRNGLEG 366

Query: 181 YGA----MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           + +    ++D+  + G  E A  +   M+    VV W +L + 
Sbjct: 367 WDSIGNVIIDMYMKCGKPEMACRVFDLMS-NKTVVSWNSLTAG 408



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 106/247 (42%), Gaps = 35/247 (14%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+++V +N+++  + R     EAL    EML     PD+ T  S I   A+L  L +   
Sbjct: 295 DRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKV 354

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-------------------- 102
            H  +I   +E    +   +IDMY KCGK +MA  VFD +                    
Sbjct: 355 CHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGD 414

Query: 103 ------------QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150
                       +RN V  WN MISG+    L  DA  +F +M+   +  D +T +G+ +
Sbjct: 415 VESAWEVFNQIPERNAV-FWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIAS 473

Query: 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
           AC + G   E  K+      +  I   +    A+VD+  R G  + A  +   MT E DV
Sbjct: 474 ACGYLG-APELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMT-ERDV 531

Query: 211 VVWRALL 217
             W A +
Sbjct: 532 SAWTAAI 538



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 149/365 (40%), Gaps = 66/365 (18%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D  +   NS+I G+       EA+  +  ML   V P+ +TF  V+ GC ++ A      
Sbjct: 93  DDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQ 152

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  +++  +E +  +   LI  Y++CG +    +VF+ +   +V  W ++I G A    
Sbjct: 153 VHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDR 212

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACS----------------------------- 153
             +A ++F +M    + P S+T + +++AC+                             
Sbjct: 213 PKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNA 272

Query: 154 ------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME 207
                  CG ++  ++ FD    R      L  Y  ++    R G   EA  ++  M  +
Sbjct: 273 LVDMYMKCGAIDAAKRLFDECVDR-----NLVLYNTILSNYARQGLAREALAILDEMLQQ 327

Query: 208 ---PDVVVWRALLSACRTFKRLELGEVAIVNISR--LMGGDYV--LLSNMYCYLKRWDTA 260
              PD V   + +SA      L  G+V    + R  L G D +  ++ +MY    + + A
Sbjct: 328 GPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMA 387

Query: 261 ENVREIMKKKGVRKSQGKSWLEL-AGVIHQFKAGD--------RSHPEAQAI--DKILGS 309
             V ++M  K V      SW  L AG I   + GD           PE  A+  + ++  
Sbjct: 388 CRVFDLMSNKTV-----VSWNSLTAGFI---RNGDVESAWEVFNQIPERNAVFWNTMISG 439

Query: 310 LIQRT 314
           L+Q++
Sbjct: 440 LVQKS 444


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  363 bits (932), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 173/414 (41%), Positives = 261/414 (63%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP + +++WNS+I G+ +N    E++  F  M+ S  +PD  T  S++  C++LGAL+  
Sbjct: 250 MPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFG 309

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H+       +LN +L  +LI+MY++CG +  A+EVFD+++  +V  W AMISG  +H
Sbjct: 310 CWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMH 369

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +FT+M  +   P++ITF+ +L+AC+H GL+++GR+ F  M+  Y + P +EH
Sbjct: 370 GYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEH 429

Query: 181 YGAMVDLLGRAGHIEEAYGLITS-MTMEPDVVVWRALLSACRTFKRLELG-EVA--IVNI 236
              MVD+ GRAG + +AY  I   +  EP   VW ++L ACR  +  +LG +VA  ++++
Sbjct: 430 NVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSV 489

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YV+LSN+Y    R D  E VR +M ++ ++K  G S +E+    + F  GD+S
Sbjct: 490 EPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKS 549

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+   I + L  L+ R    G++PA E ++ D+ EEE++  L +HSEKLALA+G+LKT+
Sbjct: 550 HPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLLKTN 609

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  IRI KNLRIC DCHS IK IS +  R IIVRD+ RFH F+ G CSC DYW
Sbjct: 610 QGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 663



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 116/258 (44%), Gaps = 43/258 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+ D   ++S++    +     + + F+R ML S      +TF SVI  CA L AL   
Sbjct: 149 VPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLG 208

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ ++      +  + AALI +Y+K   +++AK+VFD + +  +  WN++ISG   +
Sbjct: 209 KEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQN 268

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSH-------------------------- 154
           GL  ++  +F  M      PDS T + LL++CS                           
Sbjct: 269 GLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLG 328

Query: 155 ---------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
                    CG V + R+ FD M+ R  +      + AM+   G  G+  +A  L T M 
Sbjct: 329 TSLINMYTRCGNVSKAREVFDSMKERNVVT-----WTAMISGYGMHGYGRQAMELFTEMR 383

Query: 206 M---EPDVVVWRALLSAC 220
                P+ + + A+LSAC
Sbjct: 384 AYGPRPNNITFVAVLSAC 401


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  363 bits (932), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 183/392 (46%), Positives = 248/392 (63%), Gaps = 3/392 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KDVVSW+SMI G+ +N  FDE L  F+EM  S  +PD+ T  SVI  CARL AL   
Sbjct: 333 MPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQG 392

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH  I    + +N IL   LIDMY KCG ++ A EVF  +    +S WNA+I G+A++
Sbjct: 393 KWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMN 452

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL   +  +F+ M+  +V P+ ITF+G+L AC H GLV+EG+ +F  M   + IQP ++H
Sbjct: 453 GLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKH 512

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDLLGRAG ++EA  L+  M M PDV  W ALL AC+     E+G      ++ + 
Sbjct: 513 YGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQ 572

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G +VLLSN+Y    +WD    +R +M K  V K  G S +E  GVIH+F AGD++H
Sbjct: 573 PDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTH 632

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+  AI+ +L  +  + K EG+ P    VL+DV EEEKE  L+ HSEKLA+A+G++  SP
Sbjct: 633 PDMDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISP 692

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVII 389
            T IRI KNLRIC+DCH+  K+IS+   R I+
Sbjct: 693 PTPIRIMKNLRICNDCHTAAKLISKAFCRKIV 724



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 118/248 (47%), Gaps = 33/248 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +KD+V+W+++I  F +N  ++EA+R F  M    V  D+    S +  CA L  +N  
Sbjct: 201 MLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMG 260

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQM-------------------------- 94
             +H+L ++   E    L  ALI MYSKCG I +                          
Sbjct: 261 KLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKC 320

Query: 95  -----AKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
                AK +FD++   DV  W++MISG A + L  +  A+F +M+M    PD  T + ++
Sbjct: 321 NLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVI 380

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
           +AC+    +E+G+    +++ R  +   +     ++D+  + G +E A  +   M +E  
Sbjct: 381 SACARLAALEQGKWVHAYIK-RNGLTINVILGTTLIDMYMKCGCVETALEVFYGM-IEKG 438

Query: 210 VVVWRALL 217
           +  W AL+
Sbjct: 439 ISTWNALI 446



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 114/252 (45%), Gaps = 18/252 (7%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           WN MI  +++      A   ++ MLS+ +  D +T+  +I  C+   +   A  VHN ++
Sbjct: 46  WNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVL 105

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
           +   + +  +   LI+ +S C  +  A  VF+     D   WN++++G    G   +A  
Sbjct: 106 KLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKH 165

Query: 129 IFTKMEMFNVLPDS--ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186
           I+ +M   +++  +  I   G+       GLV E  K FD M     ++  +  + A++ 
Sbjct: 166 IYHQMPERSIIASNSMIVLFGMR------GLVVEACKLFDEM-----LEKDMVTWSALIA 214

Query: 187 LLGRAGHIEEAYGLITSM---TMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD 243
              +    EEA      M    +  D VV  + LSAC     + +G++ I ++S  +G +
Sbjct: 215 CFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKL-IHSLSLKIGTE 273

Query: 244 -YVLLSNMYCYL 254
            Y+ L N   Y+
Sbjct: 274 SYINLQNALIYM 285


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 181/410 (44%), Positives = 256/410 (62%), Gaps = 4/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K+V+SW+++I GF +N     AL+   +M S   +PD  +  SV+  C+++G L     V
Sbjct: 270 KNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSV 329

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  I+ +++  + + S A+IDMYSKCG +  A+ VFD +   D   WNA+I+   IHG  
Sbjct: 330 HGYIV-RRLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSG 388

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A ++F +M   NV PD  TF  LL+A SH GLVE+GR +F  M + Y IQP  +HY  
Sbjct: 389 EEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYAC 448

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD 243
           MVDLL RAG +EEA  LI SM  EP + +W ALLS C    +  +GE+A   +  L   D
Sbjct: 449 MVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDD 508

Query: 244 ---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
              Y L+SN +   +RWD    VR+IMKK G++K  G S +E+ G +H F   D+SH + 
Sbjct: 509 PGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDKSHHQY 568

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + I ++LG L    K+ G++P TE VL ++ EE KE  L +HSE+LA+A+G+L T PGT 
Sbjct: 569 EEIMQVLGKLDYEMKAMGYVPKTEFVLHNLEEEVKERMLCNHSERLAIAFGLLNTGPGTR 628

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + I+KNLR+C DCH   K IS+++ R I+VRD  RFH F+ G+CSCGDYW
Sbjct: 629 LLITKNLRVCGDCHEATKFISKIVNREIVVRDVKRFHHFKDGVCSCGDYW 678



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 114/219 (52%), Gaps = 3/219 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D+V W +MI G  +N +  EA+  +R+M   +VE D      +I  C  LG     
Sbjct: 166 MGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMG 225

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +I K I ++ I+  +L+DMY+K G +++A  VF  +   +V  W+A+ISG A +
Sbjct: 226 LSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQN 285

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +A  +   M+ F   PDS++ + +L ACS  G ++ G+    ++  R  +      
Sbjct: 286 GFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRR--LHFDCVS 343

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++D+  + G +  A  +   ++   D + W A++++
Sbjct: 344 STAVIDMYSKCGSLSFARTVFDQISFR-DSISWNAIIAS 381



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 108/218 (49%), Gaps = 2/218 (0%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P   V +WN+MI  + R     EAL  +  M S  V PD  T+  V+  C R   L    
Sbjct: 66  PQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGE 125

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
                 +++    +  + AA++++Y+KCGK+  A  VFD + R D+  W  MI+G+A +G
Sbjct: 126 ETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNG 185

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
            A +A  I+ +M    V  D +  LGL+ AC+  G  + G     +M  R  I   +   
Sbjct: 186 QAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYM-IRKDIIMDVIVQ 244

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            ++VD+  + GH+E A  +   M +  +V+ W AL+S 
Sbjct: 245 TSLVDMYAKNGHLELASCVFRRM-LYKNVISWSALISG 281



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 84/205 (40%), Gaps = 43/205 (20%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H L+I   I  +   +A LI  Y++ G I+ A++VFD   +  V  WNAMI   +  G 
Sbjct: 26  IHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGA 85

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSH---------------------------- 154
             +A +++ +M    V PDS T+  +L AC+                             
Sbjct: 86  MFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAA 145

Query: 155 -------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM--- 204
                  CG ++E  + FD M  R      L  +  M+  L + G   EA  +   M   
Sbjct: 146 VLNLYAKCGKMDEAMRVFDKMGRR-----DLVCWTTMITGLAQNGQAREAVDIYRQMHKK 200

Query: 205 TMEPDVVVWRALLSACRTFKRLELG 229
            +E D VV   L+ AC T    ++G
Sbjct: 201 RVEGDGVVMLGLIQACTTLGHSKMG 225


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 175/413 (42%), Positives = 260/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +K +V WN MI GF +N    EAL  FR+MLS  ++P +     V+  C+++ AL   
Sbjct: 563 MENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLG 622

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+  ++  +  +  ++ ALIDMY+KCG ++ ++ +FD V   D +VWN +I+G  IH
Sbjct: 623 KEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIH 682

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F  M+     PDS TFLG+L AC+H GLV EG KY   M++ Y ++P+LEH
Sbjct: 683 GHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEH 742

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  +VD+LGRAG + EA  L+  M  EPD  +W +LLS+CR +  LE+GE     ++ + 
Sbjct: 743 YACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELE 802

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                +YVLLSN+Y  L +WD    VR+ MK+ G+ K  G SW+E+ G++++F   D S 
Sbjct: 803 PNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFLVSDGSL 862

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            E++ I +    L ++    G+ P T  VL ++ EE K   L  HSEKLA+++G+L T+ 
Sbjct: 863 SESKKIQQTWIKLEKKISKIGYKPDTSCVLHELEEEGKIKILKSHSEKLAISFGLLNTAK 922

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT +R+ KNLRIC DCH+ IK++S++++R IIVRD  RFH F+ GLC+CGD+W
Sbjct: 923 GTTLRVCKNLRICVDCHNAIKLVSKVVKRDIIVRDNKRFHHFKNGLCTCGDFW 975



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 111/223 (49%), Gaps = 10/223 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K V SWN++IG   +N    ++L  F  M+ S ++PD+FT  S++  CARL  L   
Sbjct: 462 MEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCG 521

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  ++   +EL+  +  +L+ +Y +C  + + K +FD ++   +  WN MI+G + +
Sbjct: 522 KEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQN 581

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            L  +A   F +M    + P  I   G+L ACS    +  G++        ++++  L  
Sbjct: 582 ELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHS-----FALKAHLSE 636

Query: 181 YG----AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                 A++D+  + G +E++  +   +  E D  VW  +++ 
Sbjct: 637 DAFVTCALIDMYAKCGCMEQSQNIFDRVN-EKDEAVWNVIIAG 678



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 130/266 (48%), Gaps = 22/266 (8%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAY 61
           +KD+  +N+++ G+ RNA F +A+  F E+LS + + PD FT   V   CA +  +    
Sbjct: 156 EKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGE 215

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            VH L ++     +  +  ALI MY KCG ++ A +VF+T++  ++  WN+++   + +G
Sbjct: 216 AVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENG 275

Query: 122 LAADASAIFTKM---EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
              +   +F ++   E   ++PD  T + ++ AC+  G V  G      +  +  I  ++
Sbjct: 276 GFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGM-VVHGLAFKLGITEEV 334

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRA----------------LLSACRT 222
               ++VD+  + G++ EA  L   M    +VV W                  LL   + 
Sbjct: 335 TVNNSLVDMYSKCGYLGEARALF-DMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQR 393

Query: 223 FKRLELGEVAIVNISRLMGGDYVLLS 248
            +++ + EV ++N+     G++ LLS
Sbjct: 394 EEKVRVNEVTVLNVLPACSGEHQLLS 419



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 80/160 (50%), Gaps = 10/160 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE---PDKFTFASVIYGCARLGAL 57
           M ++++VSWNS++     N  F E    F+ +L S+ E   PD  T  +VI  CA +G +
Sbjct: 256 MRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEV 315

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
                VH L  +  I     ++ +L+DMYSKCG +  A+ +FD     +V  WN +I G 
Sbjct: 316 RMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGY 375

Query: 118 AIHGLAADASAIFTKMEMFN----VLPDSITFLGLLTACS 153
           +  G   D   +F  ++       V  + +T L +L ACS
Sbjct: 376 SKEG---DFRGVFELLQEMQREEKVRVNEVTVLNVLPACS 412



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 1/166 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNHAYW 62
           K+VVSWN++I G+ +   F       +EM    KV  ++ T  +V+  C+    L     
Sbjct: 363 KNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKE 422

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H          + +++ A +  Y+KC  +  A+ VF  ++   VS WNA+I   A +G 
Sbjct: 423 IHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGF 482

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM 168
              +  +F  M    + PD  T   LL AC+    +  G++    M
Sbjct: 483 PGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFM 528



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 16/181 (8%)

Query: 63  VHNLI-IEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           VH L+    K+  + +LS  +I MYS CG    ++ VFD  +  D+ ++NA++SG + + 
Sbjct: 114 VHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNA 173

Query: 122 LAADASAIFTK-MEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           L  DA ++F + +   ++ PD+ T   +  AC+    VE G     H  +  +       
Sbjct: 174 LFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAV--HALALKAGGFSDAF 231

Query: 181 YG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACR----------TFKRLELG 229
            G A++ + G+ G +E A  +  +M    ++V W +++ AC            FKRL + 
Sbjct: 232 VGNALIAMYGKCGFVESAVKVFETMR-NRNLVSWNSVMYACSENGGFGECCGVFKRLLIS 290

Query: 230 E 230
           E
Sbjct: 291 E 291


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 181/416 (43%), Positives = 263/416 (63%), Gaps = 9/416 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD+V W +MI  +V +    EALR F EM  S ++PD  +  SVI  CA LG L+ A WV
Sbjct: 307 KDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWV 366

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H+ I    +E    ++ ALI+MY+KCG +   ++VF+ + R +V  W++MI+ +++HG A
Sbjct: 367 HSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEA 426

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
           +DA ++F +M+  NV P+ +TF+G+L  CSH GLVEEG+K F  M   Y+I P+LEHYG 
Sbjct: 427 SDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGC 486

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
           MVDL GRA  + EA  +I SM +  +VV+W +L+SACR    LELG+ A   I+ +    
Sbjct: 487 MVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDH 546

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G  VL+SN+Y   +RW+   N+R +M++K V K +G S ++  G  H+F  GD+ H ++
Sbjct: 547 DGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQS 606

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
             I   L  ++ + K  G++P    VL+DV EEEK+  +  HSEKLAL +G++      E
Sbjct: 607 NEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEE 666

Query: 361 ------IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
                 IRI KNLR+C DCH + K++S++  R IIVRDR RFH ++ GLCSC DYW
Sbjct: 667 KDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 115/250 (46%), Gaps = 33/250 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVV+WN+MI  + R    DEA + F EM  S V PD+    +++  C R G + + 
Sbjct: 172 MSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYN 231

Query: 61  YWVHNLIIEKKIEL-------------------------------NFILSAALIDMYSKC 89
             ++  +IE  + +                               N  +S A++  YSKC
Sbjct: 232 RAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKC 291

Query: 90  GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
           G++  A+ +FD  ++ D+  W  MIS         +A  +F +M    + PD ++   ++
Sbjct: 292 GRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVI 351

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
           +AC++ G++++  K+         ++ +L    A++++  + G ++    +   M    +
Sbjct: 352 SACANLGILDKA-KWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRR-N 409

Query: 210 VVVWRALLSA 219
           VV W ++++A
Sbjct: 410 VVSWSSMINA 419



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 106/230 (46%), Gaps = 3/230 (1%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P + +V +N  +    R++     + F++ +       D+F+F  ++   +++ AL    
Sbjct: 73  PPESIV-FNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGM 131

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H +  +     +  +    +DMY+ CG+I  A+ VFD +   DV  WN MI      G
Sbjct: 132 ELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFG 191

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
           L  +A  +F +M+  NV+PD +    +++AC   G +   R  ++ +     ++      
Sbjct: 192 LVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIEN-DVRMDTHLL 250

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV 231
            A+V +   AG ++ A      M++  ++ V  A++S      RL+  +V
Sbjct: 251 TALVTMYAGAGCMDMAREFFRKMSVR-NLFVSTAMVSGYSKCGRLDDAQV 299



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++VVSW+SMI     +    +AL  F  M    VEP++ TF  V+YGC+  G +   
Sbjct: 405 MPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEG 464

Query: 61  YWVH-NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             +  ++  E  I         ++D++ +   ++ A EV +++   ++V +W +++S   
Sbjct: 465 KKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACR 524

Query: 119 IHG 121
           IHG
Sbjct: 525 IHG 527


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 184/419 (43%), Positives = 257/419 (61%), Gaps = 15/419 (3%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK--VEPDKFTFASVIYGCARLGALN-- 58
           +++VV+W  MIGG+ +    ++AL+ F EM+S    V P+ +T + ++  CA L +L   
Sbjct: 472 ERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMG 531

Query: 59  ---HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMI 114
              HAY   +   E  +   + ++  LIDMYSKCG +  A+ VFD++ +RN+VS W +M+
Sbjct: 532 KQIHAYVTRHHEYESSV---YFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVS-WTSMM 587

Query: 115 SGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI 174
           SG  +HG   +A  IF KM+    +PD I+FL LL ACSH G+V++G  YFD MRS Y +
Sbjct: 588 SGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGV 647

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI- 233
               +HY  ++DLL R+G +++A+  I  M MEP   +W ALLSACR    +EL E A+ 
Sbjct: 648 IASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALN 707

Query: 234 --VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFK 291
             V++     G Y L+SN+Y   +RW     +R++MKK G++K  G SW++       F 
Sbjct: 708 KLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFF 767

Query: 292 AGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYG 351
            GDRSHP +  I  +L  LI R K  G++P T   L DV +EEK   L  HSEKLALAYG
Sbjct: 768 VGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLTEHSEKLALAYG 827

Query: 352 ILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           +L TSPG  IRI+KNLR+C DCHS    IS+++   IIVRD  RFH F+ G CSCG YW
Sbjct: 828 LLTTSPGCPIRITKNLRVCGDCHSAFIYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 123/270 (45%), Gaps = 53/270 (19%)

Query: 1   MPDKDVVSWNSMIGGFVRNARF-----------------------------------DEA 25
           M  KDVVSWN+M+ G+ ++ +F                                    EA
Sbjct: 320 MEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEA 379

Query: 26  LRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKI------------E 73
           L  F++M+    EP+  T  S++  CA LGAL+     H   ++K +             
Sbjct: 380 LDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDG 439

Query: 74  LNFILSAALIDMYSKCGKIQMAKEVFDTVQR--NDVSVWNAMISGVAIHGLAADASAIFT 131
            + ++  ALIDMYSKC   + A+ +F+++ R   +V  W  MI G A +G + DA  +F+
Sbjct: 440 EDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFS 499

Query: 132 KM--EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG-AMVDLL 188
           +M  + + V P++ T   +L AC+H   +  G++   ++   +  +  +      ++D+ 
Sbjct: 500 EMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMY 559

Query: 189 GRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
            + G ++ A  +  SM    + V W +++S
Sbjct: 560 SKCGDVDTARNVFDSMPKRNE-VSWTSMMS 588



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 6/170 (3%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLS------SKVEPDKFTFASVIYGCARLGALN 58
           DV+SWNS++   V+ +    AL  F EM +      +    D  +  +++  CA L AL 
Sbjct: 217 DVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALP 276

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H+  I      +  +  ALID Y+KCG ++ A  VF+ ++  DV  WNAM++G  
Sbjct: 277 QTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYT 336

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM 168
             G    A  +F  M   N+  D IT+  ++   +  G  +E    F  M
Sbjct: 337 QSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQM 386



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 95/219 (43%), Gaps = 11/219 (5%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           WN ++   +   R D A+     ML +  +PD FT    +  C  L +       H LI 
Sbjct: 117 WNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLIC 176

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAAD 125
               E N  +  AL+ MYS+ G ++ A  VFD + R   +DV  WN++++          
Sbjct: 177 CNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRT 236

Query: 126 ASAIFTKMEMF------NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           A  +F++M         N   D I+ + +L AC+    + + ++   +     +      
Sbjct: 237 ALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFV 296

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
              A++D   + G +++A  +   M  + DVV W A+++
Sbjct: 297 -CNALIDTYAKCGSMKDAVNVFNVMEFK-DVVSWNAMVT 333



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 8/125 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++ VSW SM+ G+  + R  EAL  F +M  +   PD  +F  ++Y C+  G ++  
Sbjct: 575 MPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQG 634

Query: 61  YWVHNLIIEKKIELNFILS----AALIDMYSKCGKIQMA-KEVFDTVQRNDVSVWNAMIS 115
               +++   + +   I S    A +ID+ ++ G++  A K + +       ++W A++S
Sbjct: 635 LDYFDIM---RSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLS 691

Query: 116 GVAIH 120
              +H
Sbjct: 692 ACRVH 696


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 173/414 (41%), Positives = 261/414 (63%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP + +++WNS+I G+ +N    E++  F  M+ S  +PD  T  S++  C++LGAL+  
Sbjct: 186 MPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFG 245

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H+       +LN +L  +LI+MY++CG +  A+EVFD+++  +V  W AMISG  +H
Sbjct: 246 CWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMH 305

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +FT+M  +   P++ITF+ +L+AC+H GL+++GR+ F  M+  Y + P +EH
Sbjct: 306 GYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEH 365

Query: 181 YGAMVDLLGRAGHIEEAYGLITS-MTMEPDVVVWRALLSACRTFKRLELG-EVA--IVNI 236
              MVD+ GRAG + +AY  I   +  EP   VW ++L ACR  +  +LG +VA  ++++
Sbjct: 366 NVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSV 425

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YV+LSN+Y    R D  E VR +M ++ ++K  G S +E+    + F  GD+S
Sbjct: 426 EPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKS 485

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+   I + L  L+ R    G++PA E ++ D+ EEE++  L +HSEKLALA+G+LKT+
Sbjct: 486 HPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLLKTN 545

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  IRI KNLRIC DCHS IK IS +  R IIVRD+ RFH F+ G CSC DYW
Sbjct: 546 QGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 599



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 116/258 (44%), Gaps = 43/258 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+ D   ++S++    +     + + F+R ML S      +TF SVI  CA L AL   
Sbjct: 85  VPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLG 144

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ ++      +  + AALI +Y+K   +++AK+VFD + +  +  WN++ISG   +
Sbjct: 145 KEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQN 204

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSH-------------------------- 154
           GL  ++  +F  M      PDS T + LL++CS                           
Sbjct: 205 GLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLG 264

Query: 155 ---------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
                    CG V + R+ FD M+ R  +      + AM+   G  G+  +A  L T M 
Sbjct: 265 TSLINMYTRCGNVSKAREVFDSMKERNVVT-----WTAMISGYGMHGYGRQAMELFTEMR 319

Query: 206 M---EPDVVVWRALLSAC 220
                P+ + + A+LSAC
Sbjct: 320 AYGPRPNNITFVAVLSAC 337


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 173/409 (42%), Positives = 259/409 (63%), Gaps = 3/409 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D V+W SMI G V N   D+ALR +  M  S+V PD++TFA++I   + + AL     +H
Sbjct: 457 DDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLH 516

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             +I+     +  +  +L+DMY+KCG I+ A  +F  +   ++++WNAM+ G+A HG A 
Sbjct: 517 ANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAE 576

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           +A  +F  M+   + PD ++F+G+L+ACSH GL  E  +Y   M + Y I+P++EHY  +
Sbjct: 577 EAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCL 636

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD- 243
           VD LGRAG ++EA  +I +M  +    + RALL ACR    +E G+     +  L   D 
Sbjct: 637 VDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDS 696

Query: 244 --YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
             YVLLSN+Y    RWD   + R++MK+K V+K  G SW+++  ++H F   DRSHP+A 
Sbjct: 697 AAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQAD 756

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
            I   +  +++  + +G++P TE VL+DV +EEKE +LY+HSEKLA+AYG++ T   T I
Sbjct: 757 IIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTI 816

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           R+ KNLR+C DCH+ IK IS++  R I++RD  RFH F  G+CSCGDYW
Sbjct: 817 RVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 865



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 113/222 (50%), Gaps = 7/222 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYG-----CARLG 55
           M   D++SWNSMI    +++  +E++  F ++L   ++PD FT AS+        C  L 
Sbjct: 347 MKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLV 406

Query: 56  ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
            L+    +H   I+   + +  +++ ++DMY KCG +  A  VF+ +   D   W +MIS
Sbjct: 407 LLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMIS 466

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           G   +G    A  I+ +M    V+PD  TF  L+ A S    +E+GR+   ++     + 
Sbjct: 467 GCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVS 526

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
                  ++VD+  + G+IE+AY L   M +  ++ +W A+L
Sbjct: 527 DPFVG-TSLVDMYAKCGNIEDAYRLFKKMNVR-NIALWNAML 566



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 115/227 (50%), Gaps = 9/227 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA--LN 58
           M ++DVV WN M+ G+V+     EA + F E   S + PD+F+   ++ GC   G   L 
Sbjct: 244 MRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLE 303

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               VH + ++  ++ +  ++ +L++MYSK G    A+EVF+ ++  D+  WN+MIS  A
Sbjct: 304 LGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCA 363

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITF--LGLLTACSHCG---LVEEGRKYFDHMRSRYS 173
              L  ++  +F  +    + PD  T   + L TA   CG   L+++G++   H   +  
Sbjct: 364 QSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHA-IKAG 422

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
               L     ++D+  + G +  A G++ +    PD V W +++S C
Sbjct: 423 FDSDLHVNSGILDMYIKCGDMVNA-GIVFNYISAPDDVAWTSMISGC 468



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 111/225 (49%), Gaps = 7/225 (3%)

Query: 2   PDKDVVSWNSMIGGFV-----RNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA 56
           P++D+V+WN+++G +       +    E L  FR + +S     + T A V+  C   G 
Sbjct: 139 PERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGC 198

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
           L  A  VH   I+  +E +  +S AL+++YSKCG+++ A+ +FD ++  DV +WN M+ G
Sbjct: 199 LWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKG 258

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVE-EGRKYFDHMRSRYSIQ 175
               GL  +A  +F++     + PD  +   +L  C   G  + E  K    +  +  + 
Sbjct: 259 YVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLD 318

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
             +    ++V++  + G    A  +   M    D++ W +++S+C
Sbjct: 319 SDVSVANSLVNMYSKMGCAYFAREVFNDMK-HLDLISWNSMISSC 362



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 65/123 (52%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +++  WN+M+ G  ++   +EA+  F+ M S  +EPD+ +F  ++  C+  G  + A
Sbjct: 554 MNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEA 613

Query: 61  Y-WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
           Y ++H++  +  IE      + L+D   + G +Q A +V +T+  +   S+  A++    
Sbjct: 614 YEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACR 673

Query: 119 IHG 121
           I G
Sbjct: 674 IQG 676



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 30/182 (16%)

Query: 57  LNHAYWVHNLIIEKKIELNFILSAA---------LIDMYSKCGKIQMAKEVFDTVQRNDV 107
           L  A   HNL++ K      ++S +         L+ MYSKCG +  A++VFDT    D+
Sbjct: 84  LRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDL 143

Query: 108 SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSI------TFLGLLTAC--SHCGLVE 159
             WNA++   A    + D +A    + +F +L  S+      T   +L  C  S C    
Sbjct: 144 VTWNAILGAYAASVDSNDGNAQ-EGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 202

Query: 160 EGRKYFDHMRSRYSIQPQLEH----YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRA 215
           EG          Y+I+  LE      GA+V++  + G + +A  L   M  E DVV+W  
Sbjct: 203 EGVH-------GYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMR-ERDVVLWNM 254

Query: 216 LL 217
           +L
Sbjct: 255 ML 256


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 184/413 (44%), Positives = 250/413 (60%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  ++ VSW++MI GF +N + DEALR FR M +S ++PD     S +  C+ +G L   
Sbjct: 270 MVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLG 329

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  I+ ++ + N IL  A IDMYSKCG +  A+ +F+ +   D+ +WNAMI+    H
Sbjct: 330 RSVHGFIV-RRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAH 388

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA  +F +M    + PD  TF  LL+A SH GLVEEG+ +F  M + + I P  +H
Sbjct: 389 GRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKH 448

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  +VDLL R+G +EEA  L+TSM  EP V +W ALLS C   K+LELGE    NI  L 
Sbjct: 449 YVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQ 508

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D     L+SN+Y   K+WD    VR++MK  G +K  G S +E+ G  H F   D+SH
Sbjct: 509 PDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSH 568

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I   +  L    +  G++P TE V  D+ EE KE  L +HSEKLA+A+G+L T P
Sbjct: 569 PQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSEKLAIAFGLLNTGP 628

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT + I KNLR+C DCH  IK IS++  R I+VRD  RFH F+ G+CSC DYW
Sbjct: 629 GTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D V+W++M+ GFV   +  +A++ +R M    V+ D+     VI  C     +   
Sbjct: 169 MPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMG 228

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD-TVQRNDVSVWNAMISGVAI 119
             VH  ++   + ++ + + +L+DMY+K G + +A  VF   V RNDVS W+AMISG A 
Sbjct: 229 ASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVS-WSAMISGFAQ 287

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G + +A  +F  M+   + PDS   +  L ACS+ G ++ GR     +  R+     L 
Sbjct: 288 NGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCILG 347

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKR 225
              A +D+  + G +  A  ++ +M  + D+++W A+++ C    R
Sbjct: 348 --TAAIDMYSKCGSLASAQ-MLFNMISDRDLILWNAMIACCGAHGR 390



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 92/195 (47%), Gaps = 3/195 (1%)

Query: 24  EALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALI 83
            ALR FR  L     PD  TF   +  CARLG L     V +   +   + +  + ++L+
Sbjct: 92  SALRVFRA-LPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLL 150

Query: 84  DMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSI 143
            +Y++ G +  A +VFD + R D   W+ M++G    G   DA  ++ +M    V  D +
Sbjct: 151 HLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEV 210

Query: 144 TFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
             +G++ AC+    V  G     H+  R+ ++  +    ++VD+  + G ++ A  +   
Sbjct: 211 VMIGVIQACTAARNVRMGASVHGHLL-RHGMRMDVVTATSLVDMYAKNGLLDVACRVFGL 269

Query: 204 MTMEPDVVVWRALLS 218
           M    D V W A++S
Sbjct: 270 MVHRND-VSWSAMIS 283


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 184/406 (45%), Positives = 259/406 (63%), Gaps = 4/406 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+++V+W++MI G+ R    +EAL  FR+M  + V PD+ T  SVI  CA  GAL+   W
Sbjct: 224 DRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKW 283

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  I ++ IE +  LS AL++MY+KCG I+ AKEVFD +   D   W++MI G+AI+GL
Sbjct: 284 VHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGL 343

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A DA   F +ME   V P+ +TF+G+L+AC+H GLV EGR+Y+  M   + I P +E YG
Sbjct: 344 AEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSML-EFGIVPSMELYG 402

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            MVDLL RA  +E+A  L+ +M + P+ V+WR LL  C+  K L+  EV    ++ +   
Sbjct: 403 CMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPH 462

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
              +Y+LLSN+Y  + +W+    VR+ MK  G++   G S +E+ G++H+F  GD SHPE
Sbjct: 463 NAENYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPE 522

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           A  + +IL  + +R  + G  P    VL +V +EEKE  L  HSE+LA+AYG+LKT    
Sbjct: 523 AMEVREILRDISKRVHAVGHQPGISDVLHNVVDEEKENALCEHSERLAIAYGLLKTKTPM 582

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCS 405
            IRI KNLR+C DCH   K+IS   RR IIVRDR+RFH+F  G CS
Sbjct: 583 AIRIVKNLRVCGDCHEVTKIISAEYRREIIVRDRVRFHKFVNGSCS 628



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 115/215 (53%), Gaps = 4/215 (1%)

Query: 5   DVVSWNSMIGGFVRN-ARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++ SWNSMI G  ++     E +  FR+M+      P+ FT A V+  C+ + AL     
Sbjct: 123 NIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQ 182

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  +++     +  +  AL++ Y+KC  I +A +VFD +   ++  W+ MISG A  GL
Sbjct: 183 VHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGL 242

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F  M+   V+PD +T + +++AC+  G ++ G K+     ++  I+  LE   
Sbjct: 243 VNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTG-KWVHAYINKQLIETDLELST 301

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           A+V++  + G IE A  +  +M ++ D   W +++
Sbjct: 302 ALVNMYAKCGCIERAKEVFDAMPVK-DTKAWSSMI 335



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 7/120 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD  +W+SMI G   N   ++AL  F  M  +KV+P+  TF  V+  CA  G ++  
Sbjct: 323 MPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEG 382

Query: 61  --YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT--VQRNDVSVWNAMISG 116
             YW  + ++E  I  +  L   ++D+  +   ++ A  + +T  +  N V +W  ++ G
Sbjct: 383 RRYW--SSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPV-IWRTLLVG 439



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 93/226 (41%), Gaps = 39/226 (17%)

Query: 87  SKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAI-FTKMEMFNVL-PDSIT 144
           S  G I  A+++F  +QR ++  WN+MI G +     +    I F KM       P++ T
Sbjct: 104 SPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFT 163

Query: 145 FLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLEH----------------------- 180
              +L ACS    +EEG++ + + ++S +   P +E                        
Sbjct: 164 MAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEIT 223

Query: 181 ------YGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGEV 231
                 +  M+    R G + EA GL   M    + PD V   +++SAC     L+ G+ 
Sbjct: 224 DRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKW 283

Query: 232 AIVNISR-LMGGDYVL---LSNMYCYLKRWDTAENVREIMKKKGVR 273
               I++ L+  D  L   L NMY      + A+ V + M  K  +
Sbjct: 284 VHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTK 329


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 186/415 (44%), Positives = 255/415 (61%), Gaps = 8/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K +VSWN MIG +++NA   EA+  +  M +   EPD  +  SV+  C    AL+  
Sbjct: 269 MGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLG 328

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I  KK+  N +L  ALIDMY+KCG ++ A++VF+ ++  DV  W AMIS     
Sbjct: 329 KKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFS 388

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA A+F+K++   ++PDSI F+  L ACSH GL+EEGR  F  M   Y I P+LEH
Sbjct: 389 GRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEH 448

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
              MVDLLGRAG ++EAY  I  M+MEP+  VW ALL ACR     ++G +A   + +L 
Sbjct: 449 LACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLA 508

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    RW+   N+R IMK KG++K+ G S +E+  +IH F  GDRSH
Sbjct: 509 PEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSH 568

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P++  I + L  L+++ K  G++P +E  L DV EE+KE +L  HSEKLA+ + ++ T  
Sbjct: 569 PQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKE 628

Query: 358 GTE-----IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCG 407
             E     IRI+KNLRIC DCH   K+IS++  R II+RD  RFH F  G+CSC 
Sbjct: 629 EEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCA 683



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 121/279 (43%), Gaps = 10/279 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+++V+  N MI  +V N  + E ++ F  M    V PD +TF  V+  C+  G +   
Sbjct: 100 IPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIG 159

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H    +  +     +   L+ MY KCG +  A+ V D + R DV  WN+++ G A +
Sbjct: 160 RKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQN 219

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               DA  +  +ME   +  D+ T   LL A S+     E   Y   M  +   +  L  
Sbjct: 220 QRFDDALEVCREMESVKISHDAGTMASLLPAVSNT--TTENVMYVKDMFFKMG-KKSLVS 276

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
           +  M+ +  +     EA  L + M     EPD V   ++L AC     L LG+     I 
Sbjct: 277 WNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIE 336

Query: 238 RLMGGDYVLLSN----MYCYLKRWDTAENVREIMKKKGV 272
           R      +LL N    MY      + A +V E MK + V
Sbjct: 337 RKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDV 375



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 2/155 (1%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH+ II + +  N  L   L+  Y+    +  A++VFD +   +V + N MI     +G 
Sbjct: 61  VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGF 120

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +   +F  M   NV PD  TF  +L ACS  G +  GRK      ++  +   L    
Sbjct: 121 YGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSA-TKVGLSSTLFVGN 179

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
            +V + G+ G + EA  ++  M+   DVV W +L+
Sbjct: 180 GLVSMYGKCGFLSEARLVLDEMSRR-DVVSWNSLV 213


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 183/413 (44%), Positives = 262/413 (63%), Gaps = 11/413 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D+D+V+  S+I GF  N R  EAL  FREM +  VEPD FT  S++   A LGAL   
Sbjct: 191 MRDRDLVAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELG 250

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +++  +  N  ++ +L+D+Y+KC  I          +RN VS W ++I G+A++
Sbjct: 251 RRVHVYLLKVGLRENSHVTNSLLDLYAKCDAIW-------EXERNAVS-WTSLIVGLAVN 302

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +ME   ++P  ITF+G+L ACSHCG+++EG  YF  M+  + I P++EH
Sbjct: 303 GFGEEALELFREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDYFRRMKEEFGIMPRIEH 362

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDLL RAG +++AY  I +M ++P+ V WR LL AC     L LGE A  ++ +L 
Sbjct: 363 YGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTIHGHLGLGETARSHLLKLE 422

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               GDYVLLSN+Y    RW   + +R  M K GV+K+ G S +EL   +++F  G+RSH
Sbjct: 423 PKHSGDYVLLSNLYTSECRWADVQLIRRSMLKDGVKKTSGYSLVELGNRVYEFTMGNRSH 482

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P++Q +  +L  + +  K EG++P T  VL D+ EEEKE  L +HSEK A+A+  L T+P
Sbjct: 483 PQSQDVYALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKXAIAFMRLNTAP 542

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IR+ KNLR+C DCH  IK+++++  R I++RDR RFH F GG CSC DYW
Sbjct: 543 GTTIRVMKNLRVCADCHMAIKLMAKVYDREIVIRDRGRFHHFRGGSCSCKDYW 595



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 89/161 (55%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + +V +WN+M  G+  +     ALRF+R+M+ S++EPD  T+  ++   ++   +     
Sbjct: 92  NPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKAISKSLNVREGEA 151

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H++ I    E    +  +L+ +Y+ CG  + A  VF+ ++  D+    ++I+G A++G 
Sbjct: 152 IHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAXISVINGFALNGR 211

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
            ++A  +F +M    V PD  T + LL+A +  G +E GR+
Sbjct: 212 PSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGRR 252


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 173/411 (42%), Positives = 253/411 (61%), Gaps = 5/411 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD +SWN +I GF ++   ++AL+ F +M  +K+E   FTF S +   A +  +     +
Sbjct: 580 KDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQI 639

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF-DTVQRNDVSVWNAMISGVAIHGL 122
           H +II++  + +  +S ALI  Y+KCG I+ A+  F +  ++NDVS WNAMI+G + HG 
Sbjct: 640 HAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVS-WNAMITGYSQHGY 698

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F KM+    +P+ +TF+G+L+ACSH GLV +G  YF+ M   + + P+  HY 
Sbjct: 699 GNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYA 758

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            +VDL+ RAG +  A   I  M +EPD  +WR LLSAC   K +E+GE A  ++  L   
Sbjct: 759 CVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPE 818

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           D   YVLLSNMY    +WD  +  R++M+ +GV+K  G+SW+E+   +H F  GDR HP 
Sbjct: 819 DSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLHPL 878

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           A  I + L  L ++    G+      +L DV +E+K+  +Y HSEKLA+ +G+L  S   
Sbjct: 879 ADKIYEFLAELNKKAAEIGYFQDRYSLLNDVEQEQKDPTVYIHSEKLAITFGLLSLSDTV 938

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            I + KNLR+C DCHSWIK +S++  R IIVRD  RFH FEGG+CSC DYW
Sbjct: 939 PIHVMKNLRVCKDCHSWIKFVSKISNRAIIVRDAYRFHHFEGGICSCKDYW 989



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 113/217 (52%), Gaps = 4/217 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++VV WN M+  F +     E+ R FR+M    + P++FT+ S++  C  +GAL+    +
Sbjct: 378 ENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQI 437

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I+   + N  + + LIDMY+K GK+  A  +  T+  +DV  W A+ISG A H L 
Sbjct: 438 HTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLF 497

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS-IQPQLEHYG 182
           A+A   F +M    +  D+I F   ++AC+    + +GR+   H +S  S     L    
Sbjct: 498 AEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQI--HAQSYVSGYSEDLSIGN 555

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A+V L  R G I+EAY     +  + D + W  L+S 
Sbjct: 556 ALVSLYARCGRIKEAYLEFEKIDAK-DSISWNGLISG 591



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 116/219 (52%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD VS+NS+I G  +    D AL  F +M    ++PD  T AS++  CA  GAL   
Sbjct: 274 MQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKG 333

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ +I+  I  + I+  AL+D+Y  C  I+ A E+F T Q  +V +WN M+      
Sbjct: 334 EQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKL 393

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
              +++  IF +M++  ++P+  T+  +L  C+  G ++ G +    +  +   Q  +  
Sbjct: 394 DNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQV-IKTGFQFNVYV 452

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              ++D+  + G ++ A+ ++ ++T E DVV W AL+S 
Sbjct: 453 CSVLIDMYAKHGKLDTAHVILRTLT-EDDVVSWTALISG 490



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 116/216 (53%), Gaps = 2/216 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD VSW +MI GF +N   +EA+  F EM ++ + P  + F+SV+ GC ++   +    +
Sbjct: 176 KDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQL 235

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H L+ +    L   +  AL+ +YS+      A++VF  +Q  D   +N++ISG+A  G +
Sbjct: 236 HALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFS 295

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  +FTKM+   + PD +T   LL+AC+  G + +G +   ++  +  I   +   GA
Sbjct: 296 DGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYV-IKAGISSDMIVEGA 354

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++DL      I+ A+ +  +   E +VV+W  +L A
Sbjct: 355 LLDLYVNCSDIKTAHEMFLTAQTE-NVVLWNVMLVA 389



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 109/219 (49%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + + DVVSW ++I G+ ++  F EAL+ F+EML+  ++ D   F+S I  CA + ALN  
Sbjct: 476 LTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQG 535

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H          +  +  AL+ +Y++CG+I+ A   F+ +   D   WN +ISG A  
Sbjct: 536 RQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQS 595

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA  +F +M    +     TF   ++A ++   +++G++    M  +      +E 
Sbjct: 596 GYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQ-IHAMIIKRGFDSDIEV 654

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++    + G IE+A      M  + D V W A+++ 
Sbjct: 655 SNALITFYAKCGSIEDARREFCEMPEKND-VSWNAMITG 692



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 120/265 (45%), Gaps = 36/265 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA--RLGALN 58
           MP++ V SW+ +I GF+     +  L  F  M+   V P + +FASV+  C+  R+G + 
Sbjct: 71  MPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIG-IR 129

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
           +A  +H  II   +  + I+S  LI +Y+K G I  A++VFD +   D   W AMISG +
Sbjct: 130 YAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFS 189

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR-------KYFDHMRSR 171
            +G   +A  +F +M    + P    F  +L+ C+   L + G        KY   + + 
Sbjct: 190 QNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETY 249

Query: 172 --------YSIQPQL---------------EHYGAMVDLLGRAGHIEEAYGLITSMT--- 205
                   YS  P                   + +++  L + G  + A  L T M    
Sbjct: 250 VCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDY 309

Query: 206 MEPDVVVWRALLSACRTFKRLELGE 230
           ++PD V   +LLSAC +   L  GE
Sbjct: 310 LKPDCVTVASLLSACASNGALCKGE 334



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K+ VSWN+MI G+ ++   +EA+  F +M      P+  TF  V+  C+ +G +   
Sbjct: 678 MPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKG 737

Query: 61  Y-WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             +  ++  E  +       A ++D+ S+ G +  A++  + +    D ++W  ++S   
Sbjct: 738 LGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACT 797

Query: 119 IH 120
           +H
Sbjct: 798 VH 799



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 85/219 (38%), Gaps = 44/219 (20%)

Query: 51  CARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVW 110
           C   G+L     +H  I++       +L   L+D+Y   G +    +VF+ +    V  W
Sbjct: 20  CLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSW 79

Query: 111 NAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS----------------- 153
           + +ISG     ++     +F+ M   NV P  I+F  +L ACS                 
Sbjct: 80  DKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARII 139

Query: 154 -------------------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194
                                GL+   RK FD++ ++ S+      + AM+    + G+ 
Sbjct: 140 CHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVS-----WVAMISGFSQNGYE 194

Query: 195 EEAYGLITSMTME---PDVVVWRALLSACRTFKRLELGE 230
           EEA  L   M      P   V+ ++LS C   K  ++GE
Sbjct: 195 EEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGE 233


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 185/411 (45%), Positives = 261/411 (63%), Gaps = 10/411 (2%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +KDV+SWN++IGG+     + EAL  F+EML S   P+  T  S++  CA LGA++   W
Sbjct: 285 NKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRW 344

Query: 63  VHNLIIEKKIELNFI----LSAALIDMYSKCGKIQMAKEVFDTVQRN-DVSVWNAMISGV 117
           +H + I KK++        L  +LIDMY+KCG I  A++VFD+   N  +S WNAMISG 
Sbjct: 345 IH-VYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGF 403

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           A+HG A  A  IF++M M  + PD ITF+GLL+ACSH G+++ GR  F  M   Y I P+
Sbjct: 404 AMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPK 463

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV---AIV 234
           LEHYG M+DLLG +G  +EA  +I +M MEPD V+W +LL AC+    LELGE     ++
Sbjct: 464 LEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLI 523

Query: 235 NISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKS-QGKSWLELAGVIHQFKAG 293
            I     G YVLLSN+Y    RW+    +R ++  KG++K   G S +E+  V+H+F  G
Sbjct: 524 KIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIG 583

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           D+ HP+ + I  +L  +    +  GF+P T  VL ++ EE +EG L HHSEKLA+A+G++
Sbjct: 584 DKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWREGALRHHSEKLAIAFGLI 643

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLC 404
            T PGT++ I KNLR+C +CH   K+IS++ +R II RDR RF  F  G+C
Sbjct: 644 STKPGTKLTIMKNLRVCKNCHEATKLISKIYKREIIARDRTRFXHFRDGVC 694



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 132/295 (44%), Gaps = 50/295 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           +P KDVVSWN+MI G+V    + EAL  F+EM+  + V PD+ T  +V+  CA+  ++  
Sbjct: 181 IPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIEL 240

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              VH+ I +     N  +  ALID+YSK G+++ A E+FD +   DV  WN +I G   
Sbjct: 241 GRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTH 300

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH------------------------- 154
             L  +A  +F +M      P+ +T L +L AC+H                         
Sbjct: 301 MNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNV 360

Query: 155 -------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
                        CG ++  ++ FD   S  S    L  + AM+      G    A+ + 
Sbjct: 361 SSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRS----LSTWNAMISGFAMHGRANAAFDIF 416

Query: 202 TSMTM---EPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCY 253
           + M M   EPD + +  LLSAC     L+LG     NI R M   Y +   +  Y
Sbjct: 417 SRMRMNGIEPDDITFVGLLSACSHSGMLDLGR----NIFRSMTRGYEITPKLEHY 467



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 111/247 (44%), Gaps = 34/247 (13%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + +++ WN+M  G   ++    AL+ +  M+S  + PD +TF  ++  CA+         
Sbjct: 51  EPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQ 110

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT--------------------- 101
           +H  +++   +L+  +  +LI MY++ G+++ A++VFD                      
Sbjct: 111 IHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGY 170

Query: 102 ----------VQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMF-NVLPDSITFLGLLT 150
                     +   DV  WNAMISG    G   +A  +F +M M  NV PD  T + +++
Sbjct: 171 IESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVS 230

Query: 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
           AC+    +E GR     +   +     L+   A++DL  + G +E A  L   +    DV
Sbjct: 231 ACAQSDSIELGRHVHSWIND-HGFASNLKIVNALIDLYSKFGEVETACELFDGL-WNKDV 288

Query: 211 VVWRALL 217
           + W  L+
Sbjct: 289 ISWNTLI 295



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 2/125 (1%)

Query: 95  AKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
           A  VFDT+Q  ++ +WN M  G A+      A  ++  M    +LPDS TF  LL +C+ 
Sbjct: 42  AISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAK 101

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
             + +EG++   H+  +      +  + +++ +  + G +E+A  +   ++   DVV + 
Sbjct: 102 SKIRKEGQQIHGHVL-KLGFDLDIYVHTSLISMYAQNGRLEDARKVF-DISSHRDVVSYT 159

Query: 215 ALLSA 219
           AL++ 
Sbjct: 160 ALIAG 164



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++ + +WN+MI GF  + R + A   F  M  + +EPD  TF  ++  C+  G L+  
Sbjct: 388 MSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLG 447

Query: 61  YWV-HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             +  ++    +I         +ID+    G  + A+E+ +T+    D  +W +++    
Sbjct: 448 RNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACK 507

Query: 119 IHG 121
           IHG
Sbjct: 508 IHG 510


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 183/413 (44%), Positives = 250/413 (60%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  ++ VSW++MI GF +N + DEALR FR M +S ++PD     S +  C+ +G L   
Sbjct: 270 MVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLG 329

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  I+ ++ + N IL  A IDMYSKCG +  A+ +F+ +   D+ +WNAMI+    H
Sbjct: 330 RSVHGFIV-RRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAH 388

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA  +F +M    + PD  TF  LL+A SH GLVEEG+ +F  M + + I P  +H
Sbjct: 389 GRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKH 448

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  +VDLL R+G +EEA  L+TSM  EP V +W ALLS C   K+LELGE    NI  L 
Sbjct: 449 YVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQ 508

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D     L+SN+Y   K+WD    VR++MK  G +K  G S +E+ G  H F   D+SH
Sbjct: 509 PDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSH 568

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I   +  L    +  G++P TE V  D+ EE KE  L +HSE+LA+A+G+L T P
Sbjct: 569 PQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGP 628

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT + I KNLR+C DCH  IK IS++  R I+VRD  RFH F+ G+CSC DYW
Sbjct: 629 GTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D V+W++M+ GFV   +  +A++ +R M    V+ D+     VI  C     +   
Sbjct: 169 MPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMG 228

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD-TVQRNDVSVWNAMISGVAI 119
             VH  ++   + ++ + + +L+DMY+K G + +A  VF   V RNDVS W+AMISG A 
Sbjct: 229 ASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVS-WSAMISGFAQ 287

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G + +A  +F  M+   + PDS   +  L ACS+ G ++ GR     +  R+     L 
Sbjct: 288 NGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCILG 347

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKR 225
              A +D+  + G +  A  ++ +M  + D+++W A+++ C    R
Sbjct: 348 --TAAIDMYSKCGSLASAQ-MLFNMISDRDLILWNAMIACCGAHGR 390



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 3/195 (1%)

Query: 24  EALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALI 83
            ALR FR  L     PD  TF   +  CARLG L     V +   +   + +  + ++L+
Sbjct: 92  SALRVFRA-LPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLL 150

Query: 84  DMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSI 143
            +Y++ G +  A +VF  + R D   W+ M++G    G   DA  ++ +M    V  D +
Sbjct: 151 HLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEV 210

Query: 144 TFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
             +G++ AC+    V  G     H+  R+ ++  +    ++VD+  + G ++ A  +   
Sbjct: 211 VMIGVIQACTAARNVRMGASVHGHLL-RHGMRMDVVTATSLVDMYAKNGLLDVACRVFGL 269

Query: 204 MTMEPDVVVWRALLS 218
           M    D V W A++S
Sbjct: 270 MVHRND-VSWSAMIS 283


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 186/413 (45%), Positives = 252/413 (61%), Gaps = 6/413 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K +VSWN MIG +++NA   EA+  +  M +   EPD  +  SV+  C    AL+  
Sbjct: 270 MGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLG 329

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I  KK+  N +L  ALIDMY+KCG +  A++VF+ ++  DV  W AMIS     
Sbjct: 330 KKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFS 389

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA A+F+KM+   ++PDSI F+  L ACSH GL+EEGR  F  M   Y I P+LEH
Sbjct: 390 GRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEH 449

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
              MVDLLGRAG ++EAY  I  M MEP+  VW ALL ACR     ++G +A   + +L 
Sbjct: 450 LACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLA 509

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    RW+   N+R IMK KG++K+ G S +E+  +IH F  GDRSH
Sbjct: 510 PEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSH 569

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT-- 355
           P++  I + L  L+++ K  G++P +E  L DV EE+KE +L  HSEKLA+ + ++ T  
Sbjct: 570 PQSAEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTEE 629

Query: 356 -SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCG 407
                 IRI+KNLRIC DCH   K+IS++  R II+RD  RFH F  G+CSC 
Sbjct: 630 EDSNNAIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCA 682



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 124/279 (44%), Gaps = 10/279 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+++V+  N MI  +V N  + E ++ F  M S  V+PD +TF  V+  C+  G +   
Sbjct: 101 IPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIG 160

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H    +  +     +   L+ MY KCG +  A+ V D + R DV  WN++++G A +
Sbjct: 161 KKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQN 220

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               DA  +  +ME   +  D+ T   LL A S+     E   Y   M  +   +  L  
Sbjct: 221 QRFDDALEVCREMESVKISHDAGTMASLLPAVSNT--TTENVMYVKDMFFKMG-KKSLVS 277

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
           +  M+ +  +     EA  L + M     EPD V   ++L AC     L LG+     I 
Sbjct: 278 WNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIE 337

Query: 238 RLMGGDYVLLSN----MYCYLKRWDTAENVREIMKKKGV 272
           R      +LL N    MY      D A +V E MK + V
Sbjct: 338 RKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDV 376



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 2/165 (1%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH+ II + +  N  L   L+  Y+    +  A++VFD +   +V + N MI     +G 
Sbjct: 62  VHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGF 121

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +   +F  M   +V PD  TF  +L ACS  G +  G+K      ++  +   L    
Sbjct: 122 YREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSA-TKVGLSSTLFVGN 180

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
            +V + G+ G + EA  ++  M+   DVV W +L++     +R +
Sbjct: 181 GLVSMYGKCGFLSEARLVLDEMSRR-DVVSWNSLVAGYAQNQRFD 224


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 179/413 (43%), Positives = 248/413 (60%), Gaps = 3/413 (0%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            M +++V +W  MIGG  ++    +A   F +ML   + PD  T+ S++  CA  GAL   
Sbjct: 685  MVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWV 744

Query: 61   YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              VHN  +   +  +  +  AL+ MY+KCG I  A+ VFD +   DV  W  MI G+A H
Sbjct: 745  KEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQH 804

Query: 121  GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            G   +A   F KM+     P+  +++ +LTACSH GLV+EGR+ F  M   Y I+P +EH
Sbjct: 805  GRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEH 864

Query: 181  YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI---VNIS 237
            Y  MVDLLGRAG +EEA   I +M +EPD   W ALL AC T+  LE+ E A    + + 
Sbjct: 865  YTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLK 924

Query: 238  RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                  YVLLSN+Y    +W+    VR +M++KG+RK  G+SW+E+   IH F  GD SH
Sbjct: 925  PKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSH 984

Query: 298  PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            PE++ I   L  LI+R K++G++P T LVL +  +E KE  L  HSEKLA+ YG++ T  
Sbjct: 985  PESKEIYAQLNDLIERLKAKGYVPDTRLVLRNTDQEHKEQALCSHSEKLAIVYGLMHTQS 1044

Query: 358  GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
               IR+ KNLR+C DCH+  K IS++  R I+ RD  RFH F+ G+CSCGDYW
Sbjct: 1045 KDPIRVYKNLRVCSDCHTATKFISKITGREIVARDAKRFHHFKDGVCSCGDYW 1097



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 157/362 (43%), Gaps = 62/362 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D+DV+SWN+M+GG  +N    EA   F +M    + PD  T+ S++       AL   
Sbjct: 484 MCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWV 543

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   +E  +  +F + +A I MY +CG I  A+ +FD +    V+ WNAMI G A  
Sbjct: 544 NEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQ 603

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTAC---------------------------- 152
               +A ++F +M+    +PD+ TF+ +L+A                             
Sbjct: 604 RCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGLVDLRVGN 663

Query: 153 ------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM 206
                 S CG V+  ++ FD M     ++  +  +  M+  L + G   +A+     M  
Sbjct: 664 ALVHTYSKCGNVKYAKQVFDDM-----VERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLR 718

Query: 207 E---PDVVVWRALLSACRTFKRLE-LGEVAIVNISRLMGGDYVL---LSNMYCYLKRWDT 259
           E   PD   + ++LSAC +   LE + EV    +S  +  D  +   L +MY      D 
Sbjct: 719 EGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDD 778

Query: 260 AENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGF 319
           A +V + M ++ V      SW  + G + Q   G       +A+D        + KSEGF
Sbjct: 779 ARSVFDDMVERDVF-----SWTVMIGGLAQHGRG------LEALD-----FFVKMKSEGF 822

Query: 320 LP 321
            P
Sbjct: 823 KP 824



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 159/381 (41%), Gaps = 63/381 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++V+SW  MIGG     R  EA   F +M      P+ +T+ S++   A  GAL   
Sbjct: 280 MVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWV 339

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+  +   + L+  +  AL+ MY+K G I  A+ VFD +   D+  W  MI G+A H
Sbjct: 340 KEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQH 399

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTAC---------------------------- 152
           G   +A ++F +M+    LP+  T+L +L A                             
Sbjct: 400 GRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLR 459

Query: 153 ---------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
                    + CG +++ R  FD M  R  I      + AM+  L + G   EA+ +   
Sbjct: 460 IGNALIHMYAKCGSIDDARLVFDGMCDRDVIS-----WNAMMGGLAQNGCGHEAFTVFLQ 514

Query: 204 MTME---PDVVVWRALLSACRTFKRLE-LGEVAIVNISRLMGGDYVLLSNMYCYLKRWDT 259
           M  E   PD   + +LL+   +   LE + EV    +   +  D+ + S       R  +
Sbjct: 515 MQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGS 574

Query: 260 AENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGF 319
            ++ R +  K  VR     +W  + G   Q + G  +            SL  + + EGF
Sbjct: 575 IDDARLLFDKLSVRHV--TTWNAMIGGAAQQRCGREAL-----------SLFLQMQREGF 621

Query: 320 LP-ATELVLM---DVSEEEKE 336
           +P AT  + +   +V EE  E
Sbjct: 622 IPDATTFINILSANVDEEALE 642



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 111/214 (51%), Gaps = 2/214 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K++  W +MIGG+      ++A+R + +M     +P++ T+ S++  C     L     +
Sbjct: 182 KNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKI 241

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  II+   + +  +  AL++MY KCG I+ A+ +FD +   +V  W  MI G+A +G  
Sbjct: 242 HAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRG 301

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F +M+    +P+S T++ +L A +  G +E  ++   H  +   +   L    A
Sbjct: 302 QEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNA-GLALDLRVGNA 360

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           +V +  ++G I++A  +   MT E D+  W  ++
Sbjct: 361 LVHMYAKSGSIDDARVVFDGMT-ERDIFSWTVMI 393



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 105/202 (51%), Gaps = 2/202 (0%)

Query: 24  EALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALI 83
           +A+   +  +   +  D F++ +++  C +   +  A  VH  II+  +E N  ++  L+
Sbjct: 101 DAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLL 160

Query: 84  DMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSI 143
            +Y +CG++Q A++VFD + + ++ +W  MI G A +G A DA  ++ KM      P+ I
Sbjct: 161 RVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEI 220

Query: 144 TFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
           T+L +L AC     ++ G+K   H+  +   Q  +    A+V++  + G IE+A  LI  
Sbjct: 221 TYLSILKACCCPVNLKWGKKIHAHI-IQSGFQSDVRVETALVNMYVKCGSIEDAQ-LIFD 278

Query: 204 MTMEPDVVVWRALLSACRTFKR 225
             +E +V+ W  ++     + R
Sbjct: 279 KMVERNVISWTVMIGGLAHYGR 300


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 173/407 (42%), Positives = 252/407 (61%), Gaps = 3/407 (0%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           V+WN +I  +++N    EA+  F +M      P+  TF SV+   A L A       H  
Sbjct: 243 VTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHAC 302

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           II+     N ++  +LIDMY+KCG++  ++++F+ +   D   WNAM+SG A+HG    A
Sbjct: 303 IIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRA 362

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186
            A+F+ M+   V  DS++F+ +L+AC H GLVEEGRK F  M  +Y I+P LEHY  MVD
Sbjct: 363 IALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVD 422

Query: 187 LLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---MGGD 243
           LLGRAG  +E  G I  M +EPD  VW ALL +CR    ++LGEVA+ ++ +L       
Sbjct: 423 LLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAH 482

Query: 244 YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAI 303
           +V+LS++Y    RW  A   R  M   G++K+ G SW+EL   +H F+ GD+SHP+ +++
Sbjct: 483 FVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESM 542

Query: 304 DKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIRI 363
             +  +L+++ +  G++P    VL +V EE+KE  LY HSE+LA+ + +L T PG+ I+I
Sbjct: 543 HLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQI 602

Query: 364 SKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            KNLR+C DCH+  K IS++  R IIVRD  RFH FE G+CSC DYW
Sbjct: 603 VKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 649



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 93/194 (47%), Gaps = 14/194 (7%)

Query: 30  REMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKK-IELNFILSAALIDMYSK 88
           R +  S   P +  + S+I    R    N A  ++  ++EK  +E +  + A L+DMYSK
Sbjct: 103 RSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGGLERDVFIGAGLVDMYSK 162

Query: 89  CGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGL 148
            G ++ A+EVFD + + DV  WNAMI+G++       A  +F +M    V  D +++  +
Sbjct: 163 MGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQM----VDQDDVSWGTM 218

Query: 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME- 207
           +   +H G   E  + FD M+           +  ++    + GH +EA      M +E 
Sbjct: 219 MAGYAHNGCFVEVLELFDKMKLGNVT------WNVIIAAYMQNGHAKEAISSFHQMRLEN 272

Query: 208 --PDVVVWRALLSA 219
             P+ V + ++L A
Sbjct: 273 FHPNSVTFVSVLPA 286



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD VSWN+M+ G+  +   D A+  F  M  S+V+ D  +F SV+  C   G +   
Sbjct: 338 MDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEG 397

Query: 61  YWV-HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             + H++  +  I+ +    A ++D+  + G           +    D  VW A++    
Sbjct: 398 RKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCR 457

Query: 119 IHG 121
           +H 
Sbjct: 458 MHS 460


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 186/415 (44%), Positives = 250/415 (60%), Gaps = 8/415 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREM--LSSKVEPDKFTFASVIYGCARLGALNHA 60
           D+DVV+W  MIGG+ ++   + AL+ F  M  +   ++P+ FT +  +  CARL AL   
Sbjct: 573 DRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFG 632

Query: 61  YWVHNLIIEKKI-ELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVA 118
             VH  ++      +   ++  LIDMYSK G +  A+ VFD + QRN VS W ++++G  
Sbjct: 633 RQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVS-WTSLMTGYG 691

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG   DA  +F +M    ++PD ITFL +L ACSH G+V+ G  +F+ M   + + P  
Sbjct: 692 MHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGP 751

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           EHY  MVDL GRAG + EA  LI  M MEP  VVW ALLSACR    +ELGE A   +  
Sbjct: 752 EHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLE 811

Query: 239 LMGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L  G+   Y LLSN+Y   +RW     +R  MK+ G++K  G SW++    +  F  GDR
Sbjct: 812 LESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDR 871

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SHP++Q I + L  LIQR K+ G++P T   L DV +EEK   L+ HSEKLALAYGIL  
Sbjct: 872 SHPQSQQIYETLADLIQRIKAIGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTL 931

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            P   IRI+KNLRIC DCHS I  IS+++   II+RD  RFH F+ G CSC  YW
Sbjct: 932 HPRAPIRITKNLRICGDCHSAITYISKIIEHEIILRDSSRFHHFKNGSCSCKGYW 986



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 115/266 (43%), Gaps = 48/266 (18%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYG---------- 50
           M  KDVVSWN+M+ G+ +  R + AL  F  M    +E D  T+ +VI G          
Sbjct: 425 MKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEA 484

Query: 51  -------------------------CARLGALNHAYWVHNLIIEKKIELNFILSAA---- 81
                                    C  +GAL H    H   I+  + L+     A    
Sbjct: 485 LDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLK 544

Query: 82  ----LIDMYSKCGKIQMAKEVFDTV--QRNDVSVWNAMISGVAIHGLAADASAIFTKMEM 135
               LIDMY+KC   ++A+++FD+V  +  DV  W  MI G A HG A +A  +F+ M  
Sbjct: 545 VINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFK 604

Query: 136 FN--VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGH 193
            +  + P+  T    L AC+    +  GR+   ++   +     L     ++D+  ++G 
Sbjct: 605 MDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGD 664

Query: 194 IEEAYGLITSMTMEPDVVVWRALLSA 219
           ++ A  +  +M  + + V W +L++ 
Sbjct: 665 VDTAQIVFDNMP-QRNAVSWTSLMTG 689



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 87/166 (52%), Gaps = 1/166 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKV-EPDKFTFASVIYGCARLGALNHAYW 62
           +D+VSWNS++  ++  +  + AL  F +M +  +  PD  +  +++  CA L A      
Sbjct: 326 QDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQ 385

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH   I   +  +  +  A++DMY+KCGK++ A +VF  ++  DV  WNAM++G +  G 
Sbjct: 386 VHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGR 445

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM 168
              A ++F +M   N+  D +T+  ++T  +  G   E    F  M
Sbjct: 446 LEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQM 491



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 6/223 (2%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           WN +I   +      +    +R+M S    PD +TF  V   CA L +L+    +H  + 
Sbjct: 227 WNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVS 286

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAAD 125
                 N  +  A++ MY KCG ++ A  +FD +      D+  WN+++S       A  
Sbjct: 287 RSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANT 346

Query: 126 ASAIFTKMEMFNVL-PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           A A+F KM   +++ PD I+ + +L AC+       GR+       R  +   +    A+
Sbjct: 347 ALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHG-FSIRSGLVDDVFVGNAV 405

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
           VD+  + G +EEA  +   M  + DVV W A+++      RLE
Sbjct: 406 VDMYAKCGKMEEANKVFQRMKFK-DVVSWNAMVTGYSQAGRLE 447



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++ VSW S++ G+  + R ++ALR F EM    + PD  TF  V+Y C+  G ++H 
Sbjct: 675 MPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHG 734

Query: 61  YWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS-VWNAMISGVA 118
               N + +   ++      A ++D++ + G++  A ++ + +       VW A++S   
Sbjct: 735 INFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACR 794

Query: 119 IH 120
           +H
Sbjct: 795 LH 796


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 179/413 (43%), Positives = 254/413 (61%), Gaps = 5/413 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+V WNS+IGGF +N+  +EAL  F+ M  +    D+ T  SV+  C  L  L   
Sbjct: 213 MPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELG 272

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++  K + + IL+ ALIDMY KCG ++ A   F  +   DV  W+ M++G+A +
Sbjct: 273 RQVHVHVL--KFDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQN 330

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G +  A  +F  M+     P+ IT LG+L ACSH GLVE+G  YF  M+  + + P  EH
Sbjct: 331 GYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREH 390

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG ++DLLGRAG ++EA  LI  M  EPD V WR LL ACR  + ++L   A   I+ + 
Sbjct: 391 YGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELE 450

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y+LLSN+Y   +RW+    VR+ M  +G+RK+ G SW+E+   IH F  GD SH
Sbjct: 451 PEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSH 510

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I + L  LI+R    G++P T  VL D+  E+KE +L +HSEKLA+ +G++  S 
Sbjct: 511 PKIEEIVQRLNDLIERVMGVGYVPDTNFVLQDLEGEQKEDSLRYHSEKLAIMFGLMNLSR 570

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              +RI KNLRIC DCH + K++SR+  R I++RD IR+H F+ G+CSCGDYW
Sbjct: 571 EKTVRIRKNLRICGDCHVFAKVVSRMEHRSIVIRDPIRYHHFQDGVCSCGDYW 623



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 114/219 (52%), Gaps = 8/219 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++VVSW +MI  +  N   D+AL+    M    V P+ FT++SV+  C  L  L   
Sbjct: 116 MPERNVVSWTTMISAY-SNKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLRQ- 173

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  II+  +E +  + +ALID+YSK   +  A  VFD +   D+ VWN++I G A +
Sbjct: 174 --LHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQN 231

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A  +F +M+    L D  T   +L AC+   L+E GR+   H+         L  
Sbjct: 232 SDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHV---LKFDQDLIL 288

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++D+  + G +E+A    + M +E DV+ W  +++ 
Sbjct: 289 NNALIDMYCKCGSLEDANSAFSRM-VEKDVISWSTMVAG 326



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 22/203 (10%)

Query: 25  ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84
           A+R    M    V  D  T++ +I  C+  GA+     VH  I  K  E    +   L++
Sbjct: 39  AMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLN 98

Query: 85  MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSIT 144
           MY K   ++ A+++FD +   +V  W  MIS  + + L   A      M    V P+  T
Sbjct: 99  MYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMFREGVRPNMFT 157

Query: 145 FLGLLTACS--------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196
           +  +L AC         HCG+++ G +    +RS            A++D+  +   ++ 
Sbjct: 158 YSSVLRACDGLPNLRQLHCGIIKTGLESDVFVRS------------ALIDVYSKWSDLDN 205

Query: 197 AYGLITSMTMEPDVVVWRALLSA 219
           A G+   M    D+VVW +++  
Sbjct: 206 ALGVFDEMPTR-DLVVWNSIIGG 227


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 182/413 (44%), Positives = 252/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD V+W +M+GG+  N    EAL  F  M +  ++PD +  A  +  C RLGAL+  
Sbjct: 233 MRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLG 292

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                ++   +   N +L  ALIDMY+KCG    A  VF  +++ D+ VWNAMI G+ + 
Sbjct: 293 RQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMT 352

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A A+  +ME   V  +  TF+GLL +C+H GL+++GR+YF +M   Y I P++EH
Sbjct: 353 GHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEH 412

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDLL RAG ++EA+ L+  M M  + V+  ALL  C+  +  EL E  +  +  L 
Sbjct: 413 YGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLE 472

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G+YV+LSN+Y    RW+ A  +R  MK KGV K    SW+E  G +H+F+ GD+SH
Sbjct: 473 PWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSH 532

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P +  I K L  L    K+ G+ P TE+V+ DV +EEKE  L HHSEKLA+A+ +L T P
Sbjct: 533 PLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGP 592

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR++KNLR+C DCH+ IK++SR+  R IIVRD  RFH F  G CSC DYW
Sbjct: 593 GETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 107/218 (49%), Gaps = 4/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP    V W ++I  ++      EA+   R   ++ + PD FT   V+  CAR+  L   
Sbjct: 132 MPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATG 191

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V     ++ +  +  ++ A +D+Y KCG++  A+EVFD ++  D   W AM+ G A +
Sbjct: 192 ETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASN 251

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR-SRYSIQPQLE 179
           G   +A  +F  M+   + PD     G L+AC+  G ++ GR+    +    +   P L 
Sbjct: 252 GHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG 311

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              A++D+  + G   EA+ +   M  + D++VW A++
Sbjct: 312 --TALIDMYAKCGSTVEAWVVFQQMR-KKDIIVWNAMI 346



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 89/234 (38%), Gaps = 44/234 (18%)

Query: 39  PDKFTFASVIYGCARLG-ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE 97
           P   T    +   +RL   L     +H   ++     N  +  +L+ +Y+KCG +  A+ 
Sbjct: 68  PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 127

Query: 98  VFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH--- 154
           VFD +       W A+I+     G   +A  +        + PDS T + +LTAC+    
Sbjct: 128 VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIAD 187

Query: 155 --------------------------------CGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
                                           CG + + R+ FD MR + ++      +G
Sbjct: 188 LATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVA-----WG 242

Query: 183 AMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGEVAI 233
           AMV      GH  EA  L  +M    M+PD       LSAC     L+LG  AI
Sbjct: 243 AMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAI 296


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 181/414 (43%), Positives = 249/414 (60%), Gaps = 5/414 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  +DVV WNS+I    ++ R   AL   REM  S VE +  T  S +  C++L AL   
Sbjct: 560 LSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQG 619

Query: 61  YWVHNLIIEKKIE-LNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             +H  II   ++  NFIL++ LIDMY +CG IQ ++ +FD + + D+  WN MIS   +
Sbjct: 620 KEIHQFIIRCGLDTCNFILNS-LIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGM 678

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   DA  +F +     + P+ ITF  LL+ACSH GL+EEG KYF  M++ Y++ P +E
Sbjct: 679 HGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVE 738

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
            Y  MVDLL RAG   E    I  M  EP+  VW +LL ACR     +L E A   +  +
Sbjct: 739 QYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFEL 798

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G+YVL++N+Y    RW+ A  +R +MK++GV K  G SW+E+   +H F  GD S
Sbjct: 799 EPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTS 858

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP  + I   + SL    K  G++P T  VL DV E+EKE +L  HSEK+ALA+G++ T+
Sbjct: 859 HPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTT 918

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            GT +RI KNLR+C DCHS  K IS++ +R II+RD  RFH F  G+CSCGDYW
Sbjct: 919 AGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 972



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 113/216 (52%), Gaps = 2/216 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + D+++WN ++ GF +      AL FF+ M S  ++P+  T +  +  C ++  L     
Sbjct: 461 EPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKE 520

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  ++   IEL+  + +ALI MYS C  +++A  VF  +   DV VWN++IS  A  G 
Sbjct: 521 IHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGR 580

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           + +A  +  +M + NV  +++T +  L ACS    + +G++    +  R  +        
Sbjct: 581 SVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFI-IRCGLDTCNFILN 639

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
           +++D+ GR G I+++  +   M  + D+V W  ++S
Sbjct: 640 SLIDMYGRCGSIQKSRRIFDLMP-QRDLVSWNVMIS 674



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 113/232 (48%), Gaps = 3/232 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++V SW +++  +     ++E ++ F  M++  V PD F F  V   C+ L      
Sbjct: 150 MSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVG 209

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V++ ++    E N  +  +++DM+ KCG++ +A+  F+ ++  DV +WN M+SG    
Sbjct: 210 KDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSK 269

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A    + M++  V PD +T+  +++  +  G  EE  KYF  M      +P +  
Sbjct: 270 GEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVS 329

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELG 229
           + A++    + G+  EA  +   M +E   P+ +   + +SAC     L  G
Sbjct: 330 WTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHG 381



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 123/245 (50%), Gaps = 15/245 (6%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +VVSW ++I G  +N    EAL  FR+M+   V+P+  T AS +  C  L  L H   +H
Sbjct: 326 NVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIH 385

Query: 65  NLIIE-KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
              I+ ++++ + ++  +L+D Y+KC  +++A+  F  +++ D+  WNAM++G A+ G  
Sbjct: 386 GYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSH 445

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  + ++M+   + PD IT+ GL+T  +  G  +   ++F  M S   + P       
Sbjct: 446 EEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHS-MGMDPNTTTISG 504

Query: 184 MVDLLGRAGHI---EEAYGLITSMTMEPDVVVWRALLS----------ACRTFKRLELGE 230
            +   G+  ++   +E +G +    +E    V  AL+S          AC  F  L   +
Sbjct: 505 ALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRD 564

Query: 231 VAIVN 235
           V + N
Sbjct: 565 VVVWN 569



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 92/209 (44%), Gaps = 7/209 (3%)

Query: 14  GGFV-RNARFDEALRFFREMLSSKVEPDKFT--FASVIYGCARLGALNHAYWVHNLIIEK 70
           GG V RN   + A      M      PD+    +AS++  C +L  L   + VH  ++  
Sbjct: 61  GGSVHRNGVLNNAAMLLSSM--DLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVN 118

Query: 71  KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIF 130
            +++   L + L+++Y + G ++ A+ +FD +   +V  W A++      G   +   +F
Sbjct: 119 GVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLF 178

Query: 131 TKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGR 190
             M    V PD   F  +  ACS       G+  +D+M S    +      G+++D+  +
Sbjct: 179 YLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLS-IGFEGNSCVKGSILDMFIK 237

Query: 191 AGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            G ++ A      +  + DV +W  ++S 
Sbjct: 238 CGRMDIARRFFEEIEFK-DVFMWNIMVSG 265


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 192/414 (46%), Positives = 265/414 (64%), Gaps = 9/414 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLGALNH 59
           MP +DVVSWNSMI G+ +N     ++  F+EM+S   ++PD+ T ASV+  C  +GAL  
Sbjct: 351 MPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKL 410

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
           +YWV +++ EK I+L      +LI MYSKCG +  A  +F T+   DV  +N +ISG A 
Sbjct: 411 SYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAA 470

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G   +A  +   ME   + PD +T++G+LTACSH GL+ EG+  F  +++     P ++
Sbjct: 471 NGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQA-----PTVD 525

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY  MVDLLGRAG ++EA  LI SM M+P   V+ +LL+A R  KR+ LGE+A   +  L
Sbjct: 526 HYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFEL 585

Query: 240 MG---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G+YVLLSN+Y    RW+  + VRE+MKK G++KS G SW+E  G +H+F  GDRS
Sbjct: 586 EPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRS 645

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           H +++ I K+L  L ++ K  GF+      L DV EEEKE  L  HSEKLA+ + +L + 
Sbjct: 646 HEQSKDIYKLLAELERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISE 705

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            GT IR+ KNLRIC DCH+ IKMIS+L  R I+VRD  RFH F  G+CSC DYW
Sbjct: 706 VGTTIRVVKNLRICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 123/252 (48%), Gaps = 35/252 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++ VVSWN+M   + +     EAL  F +ML   + PD  T+   I  C+ +G    A
Sbjct: 218 MPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLA 277

Query: 61  YWVHNLIIEKKIELNFILSAALIDM--------------------------------YSK 88
             +  +I +K I LN  +  AL+DM                                Y++
Sbjct: 278 DSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTR 337

Query: 89  CGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM-EMFNVLPDSITFLG 147
            GK+ +A+E+FD + + DV  WN+MI+G A +G +A +  +F +M    ++ PD +T   
Sbjct: 338 VGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIAS 397

Query: 148 LLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME 207
           +L+AC H G ++      D +R + +I+  +  + +++ +  + G + +A+ +  +M   
Sbjct: 398 VLSACGHIGALKLSYWVLDIVREK-NIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTR 456

Query: 208 PDVVVWRALLSA 219
            DVV +  L+S 
Sbjct: 457 -DVVSFNTLISG 467



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 100/229 (43%), Gaps = 9/229 (3%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIE 69
           N+++  + +N + D A   F +M     E     + S+I GC + G    A  + N++  
Sbjct: 134 NAILDMYAKNGQVDLARNLFEQM----AERTLADWNSMISGCWKSGNETEAVVLFNMMPA 189

Query: 70  KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAI 129
           +    N I   +++  Y+K G ++ A+  FD +    V  WNAM S  A      +A  +
Sbjct: 190 R----NIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNL 245

Query: 130 FTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLG 189
           F +M    + PD  T++  +++CS  G           +  ++ +        A++D+  
Sbjct: 246 FHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVK-TALLDMHA 304

Query: 190 RAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           + G++E A  +   +  + + V W  ++SA     +L L      N+ +
Sbjct: 305 KFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPK 353


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 184/413 (44%), Positives = 261/413 (63%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD+V W++MI G+  +    EAL  F EM S  ++PD+ T  SVI  CA LGAL+ A
Sbjct: 315 MVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQA 374

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H  + +        ++ ALI+MY+KCG ++ A+ +FD + R +V  W  MIS  A+H
Sbjct: 375 KWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMH 434

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A  A   F +ME  N+ P+ ITF+G+L ACSH GLVEEGRK F  M + ++I P+  H
Sbjct: 435 GDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVH 494

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDL GRA  + EA  L+ +M + P+V++W +L++ACR    +ELGE A   +  L 
Sbjct: 495 YGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELD 554

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G +V LSN+Y   +RW+    VR++MK KG+ K +G S  EL   IH+F   DRSH
Sbjct: 555 PDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSH 614

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
             A  I + L  ++ + K  G+ P T  +L+D+ EEEK+  +  HSEKLAL YG+++   
Sbjct: 615 KHADEIYEKLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHSEKLALCYGLMRDGT 674

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G+ IRI KNLR+C DCH++IK+ S++  R I+VRDR RFH ++ G+CSC DYW
Sbjct: 675 GSCIRIIKNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCSCKDYW 727



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 126/250 (50%), Gaps = 33/250 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVV+W+ MI G+ ++  F++AL  F EM +  VEPD+   ++V+  C R G L++ 
Sbjct: 183 MFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYG 242

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKC------------------------------- 89
             +H+ I+E  I ++  L +AL+ MY+ C                               
Sbjct: 243 KMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKL 302

Query: 90  GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
           G+I+ A+ VF+ + + D+  W+AMISG A      +A  +F +M+   + PD +T L ++
Sbjct: 303 GQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVI 362

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
           TAC+H G +++  K+      +      L    A++++  + G +E A  +   M  + +
Sbjct: 363 TACAHLGALDQA-KWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRK-N 420

Query: 210 VVVWRALLSA 219
           V+ W  ++SA
Sbjct: 421 VISWTCMISA 430



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 128/280 (45%), Gaps = 10/280 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  +    N  +    R+   ++ L  +  M +  +  D+F+F  ++   +R+ +L   
Sbjct: 82  IPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEG 141

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L  +   + +  +   L+ MY+ CG+I  A+ +FD +   DV  W+ MI G    
Sbjct: 142 LEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQS 201

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
           GL  DA  +F +M+ +NV PD +    +L+AC   G +  G+   D  M +   + P L+
Sbjct: 202 GLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQ 261

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
              A+V +    G ++ A  L   MT   ++V   A+++    + +L   E A    +++
Sbjct: 262 --SALVTMYASCGSMDLALNLFEKMT-PKNLVASTAMVTG---YSKLGQIENARSVFNQM 315

Query: 240 MGGDYVLLSNMYCYLKRWDTAE---NVREIMKKKGVRKSQ 276
           +  D V  S M       D+ +   N+   M+  G++  Q
Sbjct: 316 VKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQ 355



 Score = 42.0 bits (97), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 95/256 (37%), Gaps = 48/256 (18%)

Query: 47  VIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRND 106
           VI  CA   +L++A  V NLI + +  L        +   S+  + +    V++ ++   
Sbjct: 62  VISSCALSSSLDYALSVFNLIPKPETHL----CNRFLRELSRSEEPEKTLLVYERMRTQG 117

Query: 107 VSV--------------WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC 152
           ++V                +++ G+ IHGLAA                D     GL+   
Sbjct: 118 LAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAK----------LGFDSDPFVQTGLVRMY 167

Query: 153 SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM---TMEPD 209
           + CG + E R  FD M  R  +      +  M+D   ++G   +A  L   M    +EPD
Sbjct: 168 AACGRIAEARLMFDKMFHRDVVT-----WSIMIDGYCQSGLFNDALLLFEEMKNYNVEPD 222

Query: 210 VVVWRALLSACRTFKRLELG--------EVAIVNISRLMGGDYVLLSNMYCYLKRWDTAE 261
            ++   +LSAC     L  G        E  IV    L       L  MY      D A 
Sbjct: 223 EMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSA----LVTMYASCGSMDLAL 278

Query: 262 NVREIMKKKGVRKSQG 277
           N+ E M  K +  S  
Sbjct: 279 NLFEKMTPKNLVASTA 294


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 192/414 (46%), Positives = 265/414 (64%), Gaps = 9/414 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLGALNH 59
           MP +DVVSWNSMI G+ +N     ++  F+EM+S   ++PD+ T ASV+  C  +GAL  
Sbjct: 351 MPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKL 410

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
           +YWV +++ EK I+L      +LI MYSKCG +  A  +F T+   DV  +N +ISG A 
Sbjct: 411 SYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAA 470

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G   +A  +   ME   + PD +T++G+LTACSH GL+ EG+  F  +++     P ++
Sbjct: 471 NGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQA-----PTVD 525

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY  MVDLLGRAG ++EA  LI SM M+P   V+ +LL+A R  KR+ LGE+A   +  L
Sbjct: 526 HYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFEL 585

Query: 240 MG---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G+YVLLSN+Y    RW+  + VRE+MKK G++KS G SW+E  G +H+F  GDRS
Sbjct: 586 EPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRS 645

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           H +++ I K+L  L ++ K  GF+      L DV EEEKE  L  HSEKLA+ + +L + 
Sbjct: 646 HEQSKDIYKLLAELERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISE 705

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            GT IR+ KNLRIC DCH+ IKMIS+L  R I+VRD  RFH F  G+CSC DYW
Sbjct: 706 VGTTIRVVKNLRICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 123/252 (48%), Gaps = 35/252 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++ VVSWN+M   + +     EAL  F +ML   + PD  T+   I  C+ +G    A
Sbjct: 218 MPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLA 277

Query: 61  YWVHNLIIEKKIELNFILSAALIDM--------------------------------YSK 88
             +  +I +K I LN  +  AL+DM                                Y++
Sbjct: 278 DSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTR 337

Query: 89  CGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM-EMFNVLPDSITFLG 147
            GK+ +A+E+FD + + DV  WN+MI+G A +G +A +  +F +M    ++ PD +T   
Sbjct: 338 VGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIAS 397

Query: 148 LLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME 207
           +L+AC H G ++      D +R + +I+  +  + +++ +  + G + +A+ +  +M   
Sbjct: 398 VLSACGHIGALKLSYWVLDIVREK-NIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTR 456

Query: 208 PDVVVWRALLSA 219
            DVV +  L+S 
Sbjct: 457 -DVVSFNTLISG 467



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 100/229 (43%), Gaps = 9/229 (3%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIE 69
           N+++  + +N + D A   F +M     E     + S+I GC + G    A  + N++  
Sbjct: 134 NAILDMYAKNGQVDLARNLFEQM----AERTLADWNSMISGCWKSGNETEAVVLFNMMPA 189

Query: 70  KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAI 129
           +    N I   +++  Y+K G ++ A+  FD +    V  WNAM S  A      +A  +
Sbjct: 190 R----NIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNL 245

Query: 130 FTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLG 189
           F +M    + PD  T++  +++CS  G           +  ++ +        A++D+  
Sbjct: 246 FHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVK-TALLDMHA 304

Query: 190 RAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           + G++E A  +   +  + + V W  ++SA     +L L      N+ +
Sbjct: 305 KFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPK 353


>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 568

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 188/415 (45%), Positives = 250/415 (60%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML--SSKVEPDKFTFASVIYGCARLGALN 58
           MP +D++SW+S+I  F +    DEAL  F++M    S + PD     SVI   + LGAL 
Sbjct: 154 MPRRDLISWSSLISCFAKRGLPDEALTLFQQMQLKESDILPDGVVMLSVISAVSSLGALE 213

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
              WVH  I    + L   L +ALIDMYS+CG I  + +VFD +   +V  W A+I+G+A
Sbjct: 214 LGIWVHAFISRIGVNLTVSLGSALIDMYSRCGDIDRSVKVFDEMPHRNVVTWTALINGLA 273

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG   +A   F  M    + PD I F+G+L ACSH GLVEEGR+ F  M S Y I+P L
Sbjct: 274 VHGRGREALEAFYDMVESGLKPDRIAFMGVLVACSHGGLVEEGRRVFSSMWSEYGIEPAL 333

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           EHYG MVDLLGRAG + EA+  +  M + P+ V+WR LL AC     L L E A   I  
Sbjct: 334 EHYGCMVDLLGRAGMVLEAFDFVEGMRVRPNSVIWRTLLGACVNHNLLVLAEKAKERIKE 393

Query: 239 L---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L     GDYVLLSN Y  +  W   E VR  M++  + K  G S + +  V H+F +GD 
Sbjct: 394 LDPHHDGDYVLLSNAYGGVGNWVKKEGVRNSMRESKIVKEPGLSLVHIDQVAHEFVSGDN 453

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SHP+ + I + LGS+I   K  G+ P+T+ VL D+ EEEKE +L +HSEKLA+A+ +L  
Sbjct: 454 SHPQWEEITRFLGSVIDTVKLGGYTPSTKNVLHDIQEEEKEHSLGYHSEKLAVAFVLLYH 513

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
                IR+ KNLRIC+DCHS++K +S    R I++RDR RFH F  G CSC D+W
Sbjct: 514 RDRKTIRVIKNLRICYDCHSFMKHVSGFFDRDIVIRDRSRFHHFRKGSCSCRDFW 568



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 99/203 (48%), Gaps = 9/203 (4%)

Query: 25  ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84
           AL  F  M  + V  D FTF  ++    +   LN  + +H L+++     N  +  ALI+
Sbjct: 82  ALALFSHMHRTNVPFDHFTFPLIL----KSSKLN-PHCIHTLVLKLGFHSNIYVQNALIN 136

Query: 85  MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEM--FNVLPDS 142
            Y   G +  + ++FD + R D+  W+++IS  A  GL  +A  +F +M++   ++LPD 
Sbjct: 137 SYGTSGSLHASLKLFDEMPRRDLISWSSLISCFAKRGLPDEALTLFQQMQLKESDILPDG 196

Query: 143 ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
           +  L +++A S  G +E G  +     SR  +   +    A++D+  R G I+ +  +  
Sbjct: 197 VVMLSVISAVSSLGALELG-IWVHAFISRIGVNLTVSLGSALIDMYSRCGDIDRSVKVFD 255

Query: 203 SMTMEPDVVVWRALLSACRTFKR 225
            M    +VV W AL++      R
Sbjct: 256 EMPHR-NVVTWTALINGLAVHGR 277


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 179/416 (43%), Positives = 261/416 (62%), Gaps = 6/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KD+V+W +M+ G+ +N R  EAL +F++M    +E D+ T A VI  CA+LGA+ HA
Sbjct: 235 LPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHA 294

Query: 61  YWVHNLIIEKKI--ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
            W+ ++          N ++ +ALIDMYSKCG    A +VF+ ++  +V  +++MI G A
Sbjct: 295 NWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYA 354

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG A  A  +F  M    + P+ +TF+G+L+ACSH GLVE+GR+ F  M   + + P  
Sbjct: 355 MHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSP 414

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           +HY  MVDLLGRAG +EEA  L+ +M MEP+  VW ALL ACR     ++ ++A   + +
Sbjct: 415 DHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFK 474

Query: 239 LMG---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLE-LAGVIHQFKAGD 294
           L     G+Y+LLSN+Y    RW+    +R+++++KG +K+ G SW E   G IH F AGD
Sbjct: 475 LEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGD 534

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
            +HP +  I + L  LI+R +S G+ P       D++++EKE  L  HSEKLALAYG+L 
Sbjct: 535 TTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLC 594

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T  G  I+I KN+RIC DCH+ +   S +  R IIVRD +RFH F  G CSCG++W
Sbjct: 595 TEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 94/229 (41%), Gaps = 33/229 (14%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH-NLI 67
           W +MI G+       E+  F+  M    V P  FTF+++   C     ++    VH   I
Sbjct: 110 WTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTI 169

Query: 68  IEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS------------------- 108
           +      +  +  ++ID+Y KCG +  A++VFD +   DV                    
Sbjct: 170 LIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESAS 229

Query: 109 ------------VWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
                        W AM++G A +G   +A   F KM+   +  D +T  G+++AC+  G
Sbjct: 230 GLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLG 289

Query: 157 LVEEGRKYFD-HMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
            V+      D   RS +     +    A++D+  + G  +EAY +   M
Sbjct: 290 AVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVM 338



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 78/185 (42%), Gaps = 8/185 (4%)

Query: 46  SVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE---VFDTV 102
           S+++ C     +     VH  II   +     +   LI M +K   + M      VF  V
Sbjct: 47  SILHDCTLFSQIKQ---VHAHIIRNGLSQCSYVLTKLIRMLTKV-DVPMGSYPLLVFGQV 102

Query: 103 QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR 162
              +  +W AMI G A+ GL ++++  +T+M    V P S TF  L  AC     ++ G+
Sbjct: 103 NYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGK 162

Query: 163 KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRT 222
           +              L    +M+DL  + G +  A  +   M+ E DVV W  L+ A   
Sbjct: 163 QVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMS-ERDVVSWTELIVAYAK 221

Query: 223 FKRLE 227
           +  +E
Sbjct: 222 YGDME 226


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 173/411 (42%), Positives = 256/411 (62%), Gaps = 4/411 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCAR-LGALNHAYW 62
           KD+++W++M+ G+ +    +EA + F +++   ++P++FTF+SVI  CA    A      
Sbjct: 457 KDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQ 516

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            H   I+ ++     +S+AL+ MY+K G I  A EVF   +  D+  WN+MISG + HG 
Sbjct: 517 FHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQ 576

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A  A  +F +M+  N+  D++TF+G++TAC+H GLVE+G+KYF+ M + + I P ++HY 
Sbjct: 577 AKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYS 636

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            M+DL  RAG +E+A G+I  M   P   VWR LL A R  + +ELGE+A   +  L   
Sbjct: 637 CMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPE 696

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           D   YVLLSNMY     W    NVR++M K+ V+K  G SW+E+    + F AGD +HP 
Sbjct: 697 DSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPL 756

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           +  I   L  L  R K  G+ P T+ V  D+ +E+KE  L HHSE+LA+A+G++ T P  
Sbjct: 757 SNQIYSKLSELSIRLKDAGYQPDTKNVFHDIEDEQKETILSHHSERLAIAFGLIATPPEI 816

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            I+I KNLR+C DCH++ K++S + +R I+VRD  RFH F+ GLCSCGDYW
Sbjct: 817 PIQIVKNLRVCGDCHNFTKLVSLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 112/219 (51%), Gaps = 11/219 (5%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K+VVSW +MI G ++N   D+A+  F +M    V+P+ FT+++++        +++  +V
Sbjct: 360 KNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAIL-------TVHYPVFV 412

Query: 64  ---HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H  +I+   E +  +  AL+D Y K G    A +VF+ ++  D+  W+AM++G A  
Sbjct: 413 SEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQT 472

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A+ +F ++    + P+  TF  ++ AC+      E  K F     +  +   L  
Sbjct: 473 GETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCV 532

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A+V +  + G+I+ A+ +      E D+V W +++S 
Sbjct: 533 SSALVTMYAKRGNIDSAHEVFKRQK-ERDLVSWNSMISG 570



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 114/223 (51%), Gaps = 7/223 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++VVSW S++ G+  N  +      F +M    V P+++T ++VI      G +   
Sbjct: 154 MGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIG 213

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH ++++   E    +  +LI +YS+ G ++ A++VFD ++  D   WN+MI+G   +
Sbjct: 214 LQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRN 273

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACS---HCGLVEEGRKYFDHMRSRYSIQPQ 177
           G   +   IF KM++  V P  +TF  ++ +C+      LV+  +     ++S ++    
Sbjct: 274 GQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQ--CKALKSGFTTDQI 331

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
           +    A++  L +   +++A  L + M    +VV W A++S C
Sbjct: 332 V--ITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGC 372



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 111/225 (49%), Gaps = 7/225 (3%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH--AYWVHNLI 67
           N ++  + R+ +  EAL  F  +L S ++PD+ T + V   CA  G+L+      VH   
Sbjct: 62  NQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNICA--GSLDGKLGRQVHCQC 119

Query: 68  IEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADAS 127
           ++  +  +  +  +L+DMY K   +   + VFD +   +V  W ++++G + +GL     
Sbjct: 120 VKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVW 179

Query: 128 AIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDL 187
            +F +M+   VLP+  T   ++ A  + G+V  G +    M  ++  +  +  + +++ L
Sbjct: 180 ELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQ-VHAMVVKHGFEEAIPVFNSLISL 238

Query: 188 LGRAGHIEEAYGLITSMTMEPDVVVWRALLSA-CRTFKRLELGEV 231
             R G + +A  +   M +  D V W ++++   R  + LE+ E+
Sbjct: 239 YSRLGMLRDARDVFDKMEIR-DWVTWNSMIAGYVRNGQDLEVFEI 282



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY- 61
           ++D+VSWNSMI G+ ++ +  +AL  F EM    ++ D  TF  VI  C   G +     
Sbjct: 558 ERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQK 617

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIH 120
           + +++I +  I       + +ID+YS+ G ++ A  + + +      +VW  ++    +H
Sbjct: 618 YFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVH 677


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 173/413 (41%), Positives = 262/413 (63%), Gaps = 5/413 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLS--SKVEPDKFTFASVIYGCARLGALNHA 60
           ++DVVSWNSMI  + +N    EA+  + +ML+    ++ +    ++V+  CA  GA+   
Sbjct: 262 ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTG 321

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +HN ++   +E N  +  +++DMYSKCG+++MA   F  ++  ++  W+AMI+G  +H
Sbjct: 322 KRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMH 381

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  IFT+M+   + P+ ITF+ +L ACSH GL++EGR +++ M+  + I+  +EH
Sbjct: 382 GRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEH 441

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDLLGRAG ++EAY LI  M ++PD  +W ALLSACR  K +EL E+++  +  L 
Sbjct: 442 YGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELD 501

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y   + W   E +R ++K + + K  G S  EL G I+ F  GD+SH
Sbjct: 502 ASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSH 561

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+   I   L  L++R +  G++P T  VL D+ EEEKE  L  HSEKLA+A+ ++ + P
Sbjct: 562 PQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVP 621

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            + I I KNLR+C DCH+ +K I+++  R II+RD  RFH F+ GLCSC DYW
Sbjct: 622 RSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 674



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 109/210 (51%), Gaps = 9/210 (4%)

Query: 15  GFVRNARFDEALRFFREMLSSKVEP--DKFTFASVIYGCARLGALNHAYWVHNLIIEKKI 72
           G+VRN     +L  FR M++S      D+          AR+        +H LI +   
Sbjct: 170 GYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGF 229

Query: 73  ELNFILSAALIDMYSKCGK--IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIF 130
           E N  +   ++D Y+K G   +++A++VFDT++R DV  WN+MI+  A +G++A+A  ++
Sbjct: 230 ERNAGVVNTMLDSYAKGGSRDLEVARKVFDTMER-DVVSWNSMIALYAQNGMSAEAIGLY 288

Query: 131 TKMEMF--NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLL 188
           +KM      +  +++    +L AC+H G ++ G++  + +  R  ++  +    ++VD+ 
Sbjct: 289 SKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQV-VRMGLEENVYVGTSIVDMY 347

Query: 189 GRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
            + G +E A      +  E +++ W A+++
Sbjct: 348 SKCGRVEMASRAFRKIK-EKNILSWSAMIT 376


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 183/413 (44%), Positives = 250/413 (60%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  ++ VSW++MI GF +N + DEALR FR M +S ++PD     S +  C+ +G L   
Sbjct: 270 MVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLG 329

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  I+ ++ + N IL  A IDMYSKCG +  A+ +F+ +   D+ +WNAMI+    H
Sbjct: 330 RSVHGFIV-RRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAH 388

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA  +F +M    + PD  TF  LL+A SH GLVEEG+ +F  M + + I P  +H
Sbjct: 389 GRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKH 448

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  +VDLL R+G +EEA  L+TSM  EP V +W ALLS C   K+LELGE    NI  L 
Sbjct: 449 YVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQ 508

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D     L+SN+Y   K+WD    VR++MK  G +K  G S +E+ G  H F   D+SH
Sbjct: 509 PDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSH 568

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I   +  L    +  G++P TE V  D+ EE KE  L +HSE+LA+A+G+L T P
Sbjct: 569 PQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGP 628

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT + I KNLR+C DCH  IK IS++  R I+VRD  RFH F+ G+CSC DYW
Sbjct: 629 GTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D V+W++M+ GFV   +  +A++ +R M    V+ D+     VI  C     +   
Sbjct: 169 MPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMG 228

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD-TVQRNDVSVWNAMISGVAI 119
             VH  ++   + ++ + + +L+DMY+K G + +A  VF   V RNDVS W+AMISG A 
Sbjct: 229 ASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVS-WSAMISGFAQ 287

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G + +A  +F  M+   + PDS   +  L ACS+ G ++ GR     +  R+     L 
Sbjct: 288 NGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCILG 347

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKR 225
              A +D+  + G +  A  ++ +M  + D+++W A+++ C    R
Sbjct: 348 T--AAIDMYSKCGSLASAQ-MLFNMISDRDLILWNAMIACCGAHGR 390



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 3/196 (1%)

Query: 24  EALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALI 83
            ALR FR  L     PD  TF   +  CARLG L     V +   +   + +  + ++L+
Sbjct: 92  SALRVFRA-LPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLL 150

Query: 84  DMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSI 143
            +Y++ G +  A +VF  + R D   W+ M++G    G   DA  ++ +M    V  D +
Sbjct: 151 HLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEV 210

Query: 144 TFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
             +G++ AC+    V  G     H+  R+ ++  +    ++VD+  + G ++ A  +   
Sbjct: 211 VMIGVIQACTAARNVRMGASVHGHL-LRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGL 269

Query: 204 MTMEPDVVVWRALLSA 219
           M    D V W A++S 
Sbjct: 270 MVHRND-VSWSAMISG 284


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 186/417 (44%), Positives = 265/417 (63%), Gaps = 8/417 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M DKDVV+W SMI  +V+N    +AL  FREMLS  + PD     SV+   A LG +   
Sbjct: 201 MSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEG 260

Query: 61  YWVHNLIIEKKIELNF-ILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVA 118
            W+H  +   KIEL+   + +ALIDMYSKCG I+ A  VF ++  R ++  WN+MISG+A
Sbjct: 261 KWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLA 320

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           IHGLA +A  IF +ME  ++ P+ ITFLGLL+ CSH GLVEEG+ YF+ M  +Y I P++
Sbjct: 321 IHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRI 380

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           +HYG M+DL GRAG +E+A G+I +M  E D++ W+A+LSA      +E+G+ A +    
Sbjct: 381 QHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIE 440

Query: 239 LMGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L   D   YVLLSN+Y    RWD    +R +M+++GV+K  G S + + G +H+F  G  
Sbjct: 441 LAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHEFLLGKE 500

Query: 296 --SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
             S    Q + KI   ++ R K +G+ P    VL+D+ +E KE  L  HSEK+A+A+G++
Sbjct: 501 LDSSYSGQVLAKI-AEVVSRLKLQGYEPDLTQVLLDIEDEGKESLLNLHSEKMAIAFGLI 559

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             +    I I KNLR+C DCH ++K++S++  R II+RD+ RFH FE G CSC +YW
Sbjct: 560 HINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHFENGCCSCNEYW 616



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 41/246 (16%)

Query: 11  SMIGGFVRNARFDEALRFFREMLS-----SKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           ++I GF   +   E+L  +  MLS     S VE   F+  SV+  C +L A +    VH 
Sbjct: 77  ALIKGFSDTSNPVESLILYARMLSCLNYSSGVE---FSIPSVLKACGKLLAFDEGRQVHG 133

Query: 66  LIIEKKIELNFILSAALIDMYS-------------------------------KCGKIQM 94
            +++  +  +  +  +++ MY                                K G+I++
Sbjct: 134 QVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIEL 193

Query: 95  AKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
           AK+VF+T+   DV  W +MIS    +     A  +F +M    + PD    + +L+A + 
Sbjct: 194 AKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIAD 253

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVVW 213
            G VEEG K+     S   I+      G A++D+  + G+IE AY +  S++   ++  W
Sbjct: 254 LGFVEEG-KWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDW 312

Query: 214 RALLSA 219
            +++S 
Sbjct: 313 NSMISG 318


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 181/414 (43%), Positives = 249/414 (60%), Gaps = 5/414 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  +DVV WNS+I    ++ R   AL   REM  S VE +  T  S +  C++L AL   
Sbjct: 317 LSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQG 376

Query: 61  YWVHNLIIEKKIE-LNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             +H  II   ++  NFIL++ LIDMY +CG IQ ++ +FD + + D+  WN MIS   +
Sbjct: 377 KEIHQFIIRCGLDTCNFILNS-LIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGM 435

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   DA  +F +     + P+ ITF  LL+ACSH GL+EEG KYF  M++ Y++ P +E
Sbjct: 436 HGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVE 495

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
            Y  MVDLL RAG   E    I  M  EP+  VW +LL ACR     +L E A   +  +
Sbjct: 496 QYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFEL 555

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G+YVL++N+Y    RW+ A  +R +MK++GV K  G SW+E+   +H F  GD S
Sbjct: 556 EPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTS 615

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP  + I   + SL    K  G++P T  VL DV E+EKE +L  HSEK+ALA+G++ T+
Sbjct: 616 HPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTT 675

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            GT +RI KNLR+C DCHS  K IS++ +R II+RD  RFH F  G+CSCGDYW
Sbjct: 676 AGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 729



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 120/242 (49%), Gaps = 8/242 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++V SW +++  +     ++E ++ F  M++  V PD F F  V   C+ L      
Sbjct: 71  MSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVG 130

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V++ ++    E N  +  +++DM+ KCG++ +A+  F+ ++  DV +WN M+SG    
Sbjct: 131 KDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSK 190

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F KM +  V P+SIT    ++AC++  L+  GR+   +      +   L  
Sbjct: 191 GEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLV 250

Query: 181 YGAMVDLLGRAGHIEEA---YGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
             ++VD   +   +E A   +G+I     + D+V W A+L A   F +   G+ A+    
Sbjct: 251 GNSLVDYYAKCRSVEVARRKFGMIK----QTDLVSWNAML-AVTGFTQYGDGKAALEFFQ 305

Query: 238 RL 239
           R+
Sbjct: 306 RM 307



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 84/185 (45%), Gaps = 4/185 (2%)

Query: 37  VEPDKFT--FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQM 94
             PD+    +AS++  C +L  L   + VH  ++   +++   L + L+++Y + G ++ 
Sbjct: 4   TNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVED 63

Query: 95  AKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
           A+ +FD +   +V  W A++      G   +   +F  M    V PD   F  +  ACS 
Sbjct: 64  ARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSE 123

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
                 G+  +D+M S    +      G+++D+  + G ++ A      +  + DV +W 
Sbjct: 124 LKNYRVGKDVYDYMLS-IGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFMWN 181

Query: 215 ALLSA 219
            ++S 
Sbjct: 182 IMVSG 186


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 178/412 (43%), Positives = 262/412 (63%), Gaps = 4/412 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEP-DKFTFASVIYGCARLGALNHAY 61
           DKD VS+NS++  + ++   +EA   FR ++ +KV   +  T ++V+   +  GAL    
Sbjct: 248 DKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGK 307

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H+ +I   +E + I+  ++IDMY KCG+++ A++ FD ++  +V  W AMI+G  +HG
Sbjct: 308 CIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHG 367

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
            AA A  +F  M    V P+ ITF+ +L ACSH GL  EG ++F+ M+ R+ ++P LEHY
Sbjct: 368 HAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHY 427

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
           G MVDLLGRAG +++AY LI  M M+PD ++W +LL+ACR  K +EL E+++  +  L  
Sbjct: 428 GCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDS 487

Query: 242 ---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
              G Y+LLS++Y    RW   E VR IMK +G+ K  G S LEL G +H F  GD  HP
Sbjct: 488 SNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHP 547

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           + + I + L  L ++    G++  T  V  DV EEEKE  L  HSEKLA+A+GI+ T PG
Sbjct: 548 QREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPG 607

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + + + KNLR+C DCH+ IK+IS+++ R  +VRD  RFH F+ G CSCGDYW
Sbjct: 608 STVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 134/320 (41%), Gaps = 56/320 (17%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           DV SWNS+I    R+    EAL  F  M    + P + +F   I  C+ L  +      H
Sbjct: 40  DVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTH 99

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
                   + +  +S+ALI MYS CGK++ A++VFD + + ++  W +MI G  ++G A 
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNAL 159

Query: 125 DASAIFTKMEMFNVLPDSITFL---GLLTACSHC------GLVE---------------- 159
           DA ++F  + +     D   FL   GL++  S C      GL E                
Sbjct: 160 DAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVS 219

Query: 160 -------------EG-----RKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG-- 199
                        EG     RK FD +  +  +      Y +++ +  ++G   EA+   
Sbjct: 220 VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVS-----YNSIMSVYAQSGMSNEAFEVF 274

Query: 200 --LITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLS----NMYCY 253
             L+ +  +  + +    +L A      L +G+     + R+   D V++     +MYC 
Sbjct: 275 RRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCK 334

Query: 254 LKRWDTAENVREIMKKKGVR 273
             R +TA    + MK K VR
Sbjct: 335 CGRVETARKAFDRMKNKNVR 354



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 124/267 (46%), Gaps = 52/267 (19%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTF------ASVIYGCARL 54
           +P +++VSW SMI G+  N    +A+  F+++L  + + D   F       SVI  C+R+
Sbjct: 137 IPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRV 196

Query: 55  GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK--IQMAKEVFDTVQRNDVSVWNA 112
            A      +H+ +I++  +    +   L+D Y+K G+  + +A+++FD +   D   +N+
Sbjct: 197 PAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNS 256

Query: 113 MISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSH----------------- 154
           ++S  A  G++ +A  +F ++    V+  ++IT   +L A SH                 
Sbjct: 257 IMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRM 316

Query: 155 ------------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196
                             CG VE  RK FD M+++      +  + AM+   G  GH  +
Sbjct: 317 GLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNK-----NVRSWTAMIAGYGMHGHAAK 371

Query: 197 AYGLITSMT---MEPDVVVWRALLSAC 220
           A  L  +M    + P+ + + ++L+AC
Sbjct: 372 ALELFPAMIDSGVRPNYITFVSVLAAC 398



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 8/125 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +K+V SW +MI G+  +    +AL  F  M+ S V P+  TF SV+  C+  G     
Sbjct: 348 MKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEG 407

Query: 61  Y-WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR----NDVSVWNAMIS 115
           + W + +     +E        ++D+  + G +Q A   +D +QR     D  +W+++++
Sbjct: 408 WRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKA---YDLIQRMKMKPDSIIWSSLLA 464

Query: 116 GVAIH 120
              IH
Sbjct: 465 ACRIH 469


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 178/412 (43%), Positives = 262/412 (63%), Gaps = 4/412 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEP-DKFTFASVIYGCARLGALNHAY 61
           DKD VS+NS++  + ++   +EA   FR ++ +KV   +  T ++V+   +  GAL    
Sbjct: 248 DKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGK 307

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H+ +I   +E + I+  ++IDMY KCG+++ A++ FD ++  +V  W AMI+G  +HG
Sbjct: 308 CIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHG 367

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
            AA A  +F  M    V P+ ITF+ +L ACSH GL  EG ++F+ M+ R+ ++P LEHY
Sbjct: 368 HAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHY 427

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
           G MVDLLGRAG +++AY LI  M M+PD ++W +LL+ACR  K +EL E+++  +  L  
Sbjct: 428 GCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDS 487

Query: 242 ---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
              G Y+LLS++Y    RW   E VR IMK +G+ K  G S LEL G +H F  GD  HP
Sbjct: 488 SNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHP 547

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           + + I + L  L ++    G++  T  V  DV EEEKE  L  HSEKLA+A+GI+ T PG
Sbjct: 548 QREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPG 607

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + + + KNLR+C DCH+ IK+IS+++ R  +VRD  RFH F+ G CSCGDYW
Sbjct: 608 STVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 134/320 (41%), Gaps = 56/320 (17%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           DV SWNS+I    R+    EAL  F  M    + P + +F   I  C+ L  +      H
Sbjct: 40  DVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTH 99

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
                   + +  +S+ALI MYS CGK++ A++VFD + + D+  W +MI G  ++G A 
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNAL 159

Query: 125 DASAIFTKMEMFNVLPDSITFL---GLLTACSHC------GLVE---------------- 159
           DA ++F  + +     D   FL   GL++  S C      GL E                
Sbjct: 160 DAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVS 219

Query: 160 -------------EG-----RKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG-- 199
                        EG     RK FD +  +  +      Y +++ +  ++G   EA+   
Sbjct: 220 VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVS-----YNSIMSVYAQSGMSNEAFEVF 274

Query: 200 --LITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLS----NMYCY 253
             L+ +  +  + +    +L A      L +G+     + R+   D V++     +MYC 
Sbjct: 275 RRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCK 334

Query: 254 LKRWDTAENVREIMKKKGVR 273
             R +TA    + MK K VR
Sbjct: 335 CGRVETARKAFDRMKNKNVR 354



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 124/267 (46%), Gaps = 52/267 (19%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTF------ASVIYGCARL 54
           +P +D+VSW SMI G+  N    +A+  F+++L  + + D   F       SVI  C+R+
Sbjct: 137 IPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRV 196

Query: 55  GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK--IQMAKEVFDTVQRNDVSVWNA 112
            A      +H+ +I++  +    +   L+D Y+K G+  + +A+++FD +   D   +N+
Sbjct: 197 PAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNS 256

Query: 113 MISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSH----------------- 154
           ++S  A  G++ +A  +F ++    V+  ++IT   +L A SH                 
Sbjct: 257 IMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRM 316

Query: 155 ------------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196
                             CG VE  RK FD M+++      +  + AM+   G  GH  +
Sbjct: 317 GLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNK-----NVRSWTAMIAGYGMHGHAAK 371

Query: 197 AYGLITSMT---MEPDVVVWRALLSAC 220
           A  L  +M    + P+ + + ++L+AC
Sbjct: 372 ALELFPAMIDSGVRPNYITFVSVLAAC 398



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 8/125 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +K+V SW +MI G+  +    +AL  F  M+ S V P+  TF SV+  C+  G     
Sbjct: 348 MKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEG 407

Query: 61  Y-WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR----NDVSVWNAMIS 115
           + W + +     +E        ++D+  + G +Q A   +D +QR     D  +W+++++
Sbjct: 408 WRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKA---YDLIQRMKMKPDSIIWSSLLA 464

Query: 116 GVAIH 120
              IH
Sbjct: 465 ACRIH 469


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 183/413 (44%), Positives = 265/413 (64%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +KD+V W++MI G+  + +  EAL+ F EM   ++ PD+ T  SVI  CA +GAL  A
Sbjct: 309 MVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQA 368

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H    +        ++ ALIDMY+KCG +  A+EVF+ + R +V  W++MI+  A+H
Sbjct: 369 KWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMH 428

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A  A A+F +M+  N+ P+ +TF+G+L ACSH GLVEEG+K+F  M + + I PQ EH
Sbjct: 429 GDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREH 488

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDL  RA H+ +A  LI +M   P+V++W +L+SAC+    +ELGE A   +  L 
Sbjct: 489 YGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELE 548

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G  V+LSN+Y   KRWD    VR++MK KGV K +  S +E+   +H F   DR H
Sbjct: 549 PDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYH 608

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            ++  I K L +++ + K  G+ P+T  +L+D+ EEEK+  +  HSEKLAL YG++    
Sbjct: 609 KQSDEIYKKLDAVVSQLKLVGYTPSTSGILVDLEEEEKKEVVLWHSEKLALCYGLIGERK 668

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            + IRI KNLRIC DCHS++K++S++ R  I++RDR RFH F GG+CSC DYW
Sbjct: 669 ESCIRIVKNLRICEDCHSFMKLVSKVHRIEIVMRDRTRFHHFNGGICSCRDYW 721



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 125/250 (50%), Gaps = 33/250 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVV+WN MI G+ +NA +D  L+ + EM +S  EPD     +V+  CA  G L++ 
Sbjct: 177 MSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYG 236

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I +    +   +  +L++MY+ CG + +A+EV+D +    + V  AM+SG A  
Sbjct: 237 KAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKL 296

Query: 121 GLAADASAIFTKM-------------------------EMFN------VLPDSITFLGLL 149
           G+  DA  IF +M                         ++FN      ++PD IT L ++
Sbjct: 297 GMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVI 356

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
           +AC++ G + +  K+      +      L    A++D+  + G++ +A  +  +M  + +
Sbjct: 357 SACANVGALVQA-KWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRK-N 414

Query: 210 VVVWRALLSA 219
           V+ W ++++A
Sbjct: 415 VISWSSMINA 424



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 112/264 (42%), Gaps = 43/264 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+      N ++  F R    +  L  +  +  +    D+F+F  ++   ++L ALN  
Sbjct: 75  IPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLG 134

Query: 61  YWVHNLIIEKKI-ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             +H L  +      +  + +ALI MY+ CG+I  A+ +FD +   DV  WN MI G + 
Sbjct: 135 LEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQ 194

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH------------------------- 154
           +        ++ +M+     PD+I    +L+AC+H                         
Sbjct: 195 NAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHI 254

Query: 155 ----------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
                     CG +   R+ +D + S++ +        AM+    + G +++A  +   M
Sbjct: 255 QTSLVNMYANCGAMHLAREVYDQLPSKHMVVST-----AMLSGYAKLGMVQDARFIFDRM 309

Query: 205 TMEPDVVVWRALLSA-CRTFKRLE 227
            +E D+V W A++S    +++ LE
Sbjct: 310 -VEKDLVCWSAMISGYAESYQPLE 332


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 177/412 (42%), Positives = 260/412 (63%), Gaps = 4/412 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+DVV+W +MI G+V+N  +++AL  FR M++   EP+ +T A+++   + L  L H   
Sbjct: 371 DRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQ 430

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIHG 121
           +H   I+        ++ ALI MY+K G I +AK VFD    + ++  W +MI  +A HG
Sbjct: 431 IHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHG 490

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
           L  +A  +F +M    + PD IT++G+L+AC+H GLVE+GRKY++ M   + I+P L HY
Sbjct: 491 LGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHY 550

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISR 238
             M+DL GRAG ++EAY  I SM +EPD + W +LL++C+  K  +L +VA   ++ I  
Sbjct: 551 ACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDP 610

Query: 239 LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
              G Y+ L+N+Y    +W+ A   R++MK +GVRK +G SW+ +   +H F   D  HP
Sbjct: 611 GNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHP 670

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           +   I K++  + +  K  GF+P TE VL D+ EE KE  L +HSEKLA+A+G+L T   
Sbjct: 671 QKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPEN 730

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T +RI KNLR+C+DCHS IK IS+L+ R IIVRD  RFH F+ G CSC DYW
Sbjct: 731 TALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 131/275 (47%), Gaps = 40/275 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           MPD+D+VSWNSMI G+ +     EAL  F +ML+   ++PD FT AS++  CA L  LN 
Sbjct: 234 MPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNI 293

Query: 60  AYWVHNLIIEKKIE---------------------------------LNFILSAALIDMY 86
              +H  I+  + E                                 LN I   +L+D Y
Sbjct: 294 GKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGY 353

Query: 87  SKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFL 146
           +K G ++ A+E+F+ ++  DV  W AMI G   +GL  DA  +F  M      P+S T  
Sbjct: 354 TKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLA 413

Query: 147 GLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
            +L+  S   ++E G++ +   +++  S  P + +  A++ +  + G+I  A  +     
Sbjct: 414 AMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTN--ALIAMYAKTGNINVAKRVFDLPN 471

Query: 206 MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
            + ++V W +++ A     +  LG+ AI    R++
Sbjct: 472 GKKEIVSWTSMIMA---LAQHGLGKEAINLFERML 503



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 158/351 (45%), Gaps = 61/351 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPD D VSW ++I G+ +   FD A+  F +M+S +V P +FT ++V+  CA    L+  
Sbjct: 102 MPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIG 161

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA-------- 112
             +H+ +++  +     ++ +L++MY+KCG   +AK VFD +   ++S WNA        
Sbjct: 162 RKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQS 221

Query: 113 -----------------------MISGVAIHGLAADASAIFTKM-EMFNVLPDSITFLGL 148
                                  MISG +  G   +A  IF+KM    ++ PD+ T   +
Sbjct: 222 GQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASI 281

Query: 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG----AMVDLLGRAGHIEEAYGLIT-S 203
           L+AC++   +  G++        Y ++ + E  G    A++ +  ++G +E A  ++  +
Sbjct: 282 LSACANLEKLNIGKQIH-----AYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHN 336

Query: 204 MTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNM---YCYLKRWDTA 260
            T   +++ + +LL     + +L   + A    ++L   D V  + M   Y     W+ A
Sbjct: 337 RTSNLNIIAFTSLLDG---YTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDA 393

Query: 261 ENVREIMKKKGVRK-----------SQGKSWLELAGVIH--QFKAGDRSHP 298
             +  +M  +G              S   + LE    IH    KAG+ S P
Sbjct: 394 LELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTP 444



 Score = 46.2 bits (108), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 33/217 (15%)

Query: 44  FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           FA ++    R+        VH  II+K + L   L   L+  Y+K G ++ A  VFD + 
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 104 RNDVSVWNAMISGVAIH-------------------------------GLAADASAIFTK 132
                 WN +ISG A                                 GL  +A  +F K
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 133 MEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAG 192
           M    V P   T   +L++C+    ++ GRK    +  +  +   +    +++++  + G
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFV-VKLGLGSCVPVATSLLNMYAKCG 191

Query: 193 HIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG 229
               A  +   MT++ ++  W AL+S      + EL 
Sbjct: 192 DPVIAKVVFDRMTVK-NISTWNALISLYMQSGQFELA 227


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 177/412 (42%), Positives = 259/412 (62%), Gaps = 5/412 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDV+SWN++IGG+     + EAL  F+EML S   P+  T  SV+  CA LGA++   W+
Sbjct: 260 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWI 319

Query: 64  HNLIIE--KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           H  I +  K +     L  +LIDMY+KCG I+ A +VF+++    +S WNAMI G A+HG
Sbjct: 320 HVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHG 379

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
            A  +  +F++M    + PD ITF+GLL+ACSH G+++ GR  F  M   Y + P+LEHY
Sbjct: 380 RADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHY 439

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL-- 239
           G M+DLLG +G  +EA  +I +M MEPD V+W +LL AC+    +EL E    N+ ++  
Sbjct: 440 GCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEP 499

Query: 240 -MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
                Y+LLSN+Y    RW+    +R ++  K ++K  G S +E+  V+ +F  GD+ HP
Sbjct: 500 ENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEFVVGDKFHP 559

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           + + I  +L  +    +  GF+P T  VL ++ EE KEG L HHSEKLA+A+G++ T PG
Sbjct: 560 QNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPG 619

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T++ I KNLR+C +CH   K++S++ +R I+ RDR RFH F  G+CSC DYW
Sbjct: 620 TKLTIVKNLRVCRNCHEATKLLSKIYKREIVARDRTRFHHFRDGVCSCNDYW 671



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 133/290 (45%), Gaps = 43/290 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KDVVSWN+MI G+     + EAL  F EM+   V PD+ T+ +V+  CA  G++   
Sbjct: 156 IPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELG 215

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ + +   + N  +  ALID+YSKCG+++ A  +F  +   DV  WN +I G    
Sbjct: 216 RQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHM 275

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---KYFDHMRSRYSIQPQ 177
            L  +A  +F +M      P+ +T L +L AC+H G ++ GR    Y D      +    
Sbjct: 276 NLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASS 335

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMT-------------------------------- 205
           L    +++D+  + G IE A+ +  SM                                 
Sbjct: 336 LR--TSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRK 393

Query: 206 --MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCY 253
             +EPD + +  LLSAC     L+LG     +I R M  DY +   +  Y
Sbjct: 394 IGIEPDDITFVGLLSACSHSGMLDLGR----HIFRSMTQDYKMTPKLEHY 439



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 112/240 (46%), Gaps = 33/240 (13%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           WN+MI G   ++    +L  +  M+S  + P+ +TF  ++  CA+         +H  ++
Sbjct: 32  WNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAKSKTFTEGQQIHGQVL 91

Query: 69  EKKIELNFILSAALIDMYSKC-------------------------------GKIQMAKE 97
           +   +L+  +  +LI MY +                                G I+ A++
Sbjct: 92  KLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQK 151

Query: 98  VFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL 157
           +FD +   DV  WNAMISG A  G   +A  +F +M   NV PD  T++ +L+AC+H G 
Sbjct: 152 LFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGS 211

Query: 158 VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           +E GR+    +   +     L+   A++DL  + G +E A GL   ++ + DV+ W  L+
Sbjct: 212 IELGRQVHSWV-DDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYK-DVISWNTLI 269



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 7/156 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K + SWN+MI GF  + R D +   F  M    +EPD  TF  ++  C+  G L+  
Sbjct: 360 MLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLG 419

Query: 61  -YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
            +   ++  + K+         +ID+    G  + A+E+ +T++   D  +W +++    
Sbjct: 420 RHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACK 479

Query: 119 IHG---LAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           +HG   LA   +    K+E  N  P S   L  + A
Sbjct: 480 MHGNVELAESFAQNLIKIEPEN--PSSYILLSNIYA 513



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 2/128 (1%)

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           +  A  VF+T+Q  +  +WN MI G A+      +  ++  M    +LP+S TF  LL +
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKS 73

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           C+      EG++    +  +      L  + +++ +  +   +E+AY +    +   DVV
Sbjct: 74  CAKSKTFTEGQQIHGQVL-KLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHR-DVV 131

Query: 212 VWRALLSA 219
            + AL++ 
Sbjct: 132 SYTALITG 139


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 173/413 (41%), Positives = 262/413 (63%), Gaps = 5/413 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLS--SKVEPDKFTFASVIYGCARLGALNHA 60
           ++DVVSWNSMI  + +N    EA+  + +ML+    ++ +    ++V+  CA  GA+   
Sbjct: 261 ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTG 320

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +HN ++   +E N  +  +++DMYSKCG+++MA   F  ++  ++  W+AMI+G  +H
Sbjct: 321 KRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMH 380

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  IFT+M+   + P+ ITF+ +L ACSH GL++EGR +++ M+  + I+  +EH
Sbjct: 381 GRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEH 440

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDLLGRAG ++EAY LI  M ++PD  +W ALLSACR  K +EL E+++  +  L 
Sbjct: 441 YGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELD 500

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y   + W   E +R ++K + + K  G S  EL G I+ F  GD+SH
Sbjct: 501 ASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSH 560

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+   I   L  L++R +  G++P T  VL D+ EEEKE  L  HSEKLA+A+ ++ + P
Sbjct: 561 PQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVP 620

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            + I I KNLR+C DCH+ +K I+++  R II+RD  RFH F+ GLCSC DYW
Sbjct: 621 RSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 673



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 116/224 (51%), Gaps = 9/224 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEP--DKFTFASVIYGCARLGALN 58
           +PD + V   +M  G+VRN     +L  FR M++S      D+          AR+    
Sbjct: 155 IPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRG 214

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGK--IQMAKEVFDTVQRNDVSVWNAMISG 116
               +H LI +   E N  +   ++D Y+K G   +++A++VFDT++R DV  WN+MI+ 
Sbjct: 215 VTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTMER-DVVSWNSMIAL 273

Query: 117 VAIHGLAADASAIFTKMEMF--NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI 174
            A +G++A+A  +++KM      +  +++    +L AC+H G ++ G++  + +  R  +
Sbjct: 274 YAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQV-VRMGL 332

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
           +  +    ++VD+  + G +E A      +  E +++ W A+++
Sbjct: 333 EENVYVGTSIVDMYSKCGRVEMASRAFRKIK-EKNILSWSAMIT 375


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 175/413 (42%), Positives = 254/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  D V+W ++I G + N   + AL  F +M    V PD+FT A++    + L AL   
Sbjct: 585 IPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQG 644

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++     +  +  +L+DMY+KCG I  A  +F  ++  +++ WNAM+ G+A H
Sbjct: 645 RQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQH 704

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +ME   + PD +TF+G+L+ACSH GLV E  KY   M   Y I+P++EH
Sbjct: 705 GEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEH 764

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE---VAIVNIS 237
           Y  + D LGRAG ++EA  LI SM+ME    ++R LL+ACR     E G+     ++ + 
Sbjct: 765 YSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELE 824

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
            L    YVLLSNMY    +WD  +  R +MK   V+K  G SW+E+   IH F   DRS+
Sbjct: 825 PLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDRSN 884

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I K +  +I+  K EG++P T+  L+DV EEEKE  LY+HSEKLA+A+G+L T P
Sbjct: 885 PQTELIYKKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPP 944

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T IR+ KNLR+C DCH+ +K IS++  R I++RD  RFHRF+ G+CSCGDYW
Sbjct: 945 STPIRVIKNLRVCGDCHNAMKYISKVYDREIVLRDANRFHRFKDGICSCGDYW 997



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 14/234 (5%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D+V+WN+M+ G+ ++    + L  F  M       D FT A+V+  C  L A+N    VH
Sbjct: 488 DLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVH 547

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
              I+   +L+  +S+ ++DMY KCG +  A+  FD++   D   W  +ISG   +G   
Sbjct: 548 AYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEE 607

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLEHYGA 183
            A  +F++M +  VLPD  T   L  A S    +E+GR+ + + ++   +  P +    +
Sbjct: 608 RALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVG--TS 665

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL----------SACRTFKRLE 227
           +VD+  + G I++AY L   + M  ++  W A+L           A + FK++E
Sbjct: 666 LVDMYAKCGSIDDAYCLFKRIEMM-NITAWNAMLVGLAQHGEGKEALQLFKQME 718



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 109/216 (50%), Gaps = 6/216 (2%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +++S N ++ G++   ++   L+ F +M+ S +E D+ TF  V+    RL +L     VH
Sbjct: 286 EIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVH 345

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
            + ++  ++L   +S +LI+MY K  KI +A+ VF+ +   D+  WN++I+G+A   L  
Sbjct: 346 CMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEV 405

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHC--GLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           +A  +F ++    + PD  T   +L A S    GL    + +   +++       +    
Sbjct: 406 EAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVS--T 463

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
           A++D   R   ++EA  L        D+V W A++S
Sbjct: 464 ALIDAYSRNRCMKEAEVLFGRNNF--DLVAWNAMMS 497



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 117/249 (46%), Gaps = 19/249 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG-ALNH 59
           M ++D++SWNS+I G  ++    EA+  F ++L   ++PD +T  SV+   + L   L+ 
Sbjct: 383 MSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSL 442

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN--DVSVWNAMISGV 117
           +  +H   I+     +  +S ALID YS+   ++ A+ +F    RN  D+  WNAM+SG 
Sbjct: 443 SKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFG---RNNFDLVAWNAMMSGY 499

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQP 176
                      +F  M       D  T   +L  C     + +G++   + ++S Y +  
Sbjct: 500 TQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDL-- 557

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE----VA 232
            L     ++D+  + G +  A     S+ + PD V W  L+S C     +E GE    + 
Sbjct: 558 DLWVSSGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTLISGC-----IENGEEERALH 611

Query: 233 IVNISRLMG 241
           + +  RLMG
Sbjct: 612 VFSQMRLMG 620



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 125/282 (44%), Gaps = 14/282 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNAR-----FDEALRFFREMLSSKVEPDKFTFASVIYGCARLG 55
           MP++D+VSWNS++  + +++        EA   FR +    V   + T + ++  C   G
Sbjct: 107 MPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSG 166

Query: 56  ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
            +  +   H    +  ++ +  ++ AL+++Y K GK++  + +F+ +   DV +WN M+ 
Sbjct: 167 YVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLK 226

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
                G   +A  + +      + P+ IT L LL+  S         K F++     ++ 
Sbjct: 227 AYLEMGFKEEAIDLSSAFHTSGLHPNEIT-LRLLSRISGDDSEAGQVKSFENGNDASAVS 285

Query: 176 PQLEHYGAMVDLL--GRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI 233
             +     +   L  G+   + + +  +    +E D V +  +L+       L LG+  +
Sbjct: 286 EIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQ-QV 344

Query: 234 VNISRLMGGDYVL-----LSNMYCYLKRWDTAENVREIMKKK 270
             ++  +G D +L     L NMYC L++   A  V   M ++
Sbjct: 345 HCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSER 386



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 7/143 (4%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA--IHGLAADASAIFTKMEMFN-- 137
           LI MYSKCG +  A+ VFD +   D+  WN++++  A    G+  +    F    +    
Sbjct: 87  LISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQD 146

Query: 138 -VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196
            V    +T   +L  C H G V     +  +   +  +       GA+V++  + G ++E
Sbjct: 147 VVYTSRMTLSPMLKLCLHSGYVCASESFHGYA-CKIGLDGDDFVAGALVNIYLKFGKVKE 205

Query: 197 AYGLITSMTMEPDVVVWRALLSA 219
              L   M    DVV+W  +L A
Sbjct: 206 GRVLFEEMPYR-DVVLWNLMLKA 227


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 177/411 (43%), Positives = 258/411 (62%), Gaps = 5/411 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD +SWN++I GF ++   +EAL+ F +M  + VE + FTF S +   A    +     +
Sbjct: 580 KDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQI 639

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAK-EVFDTVQRNDVSVWNAMISGVAIHGL 122
           H ++I+   +     S  LI +YSKCG I+ AK E F+  ++N VS WNAMI+G + HG 
Sbjct: 640 HAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVS-WNAMITGYSQHGY 698

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
            ++A ++F +M+   ++P+ +TF+G+L+ACSH GLV EG  YF  M   + + P+ EHY 
Sbjct: 699 GSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYV 758

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            +VDLLGRA  +  A   I  M +EPD ++WR LLSAC   K +E+GE A  ++  L   
Sbjct: 759 CVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPE 818

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           D   YVLLSNMY    +WD  +  R++MK +GV+K  G+SW+E+   IH F  GDR HP 
Sbjct: 819 DSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPL 878

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           A+ I + +  L +R    G++     +L DV +E+K+   Y HSEKLA+A+G+L  +   
Sbjct: 879 AEQIYEYIDDLNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTM 938

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IR+ KNLR+C+DCH+WIK +S++  R I+VRD  RFH FEGG+CSC DYW
Sbjct: 939 PIRVIKNLRVCNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 989



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 144/306 (47%), Gaps = 37/306 (12%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD VSW +MI G  +N R DEA+  F +M  S V P  + F+SV+  C ++        +
Sbjct: 176 KDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQL 235

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  I++  +     +  AL+ +YS+ G +  A+++F  + R D   +N++ISG+A  G +
Sbjct: 236 HGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFS 295

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCG--------------------LVEEGR- 162
             A  +F KM++  + PD +T   LL+AC+  G                    L+ EG  
Sbjct: 296 DRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSL 355

Query: 163 -----KYFD-HMRSRYSIQPQLEH---YGAMVDLLGRAGHIEEAYGLITSMTME---PDV 210
                K FD      Y +  + E+   +  M+   G+ G++ E+Y +   M +E   P+ 
Sbjct: 356 LDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQ 415

Query: 211 VVWRALLSACRTFKRLELGEVAIVNI--SRLMGGDYV--LLSNMYCYLKRWDTAENVREI 266
             + ++L  C +   L+LGE     +  S      YV  +L +MY      DTA  + + 
Sbjct: 416 YTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQR 475

Query: 267 MKKKGV 272
           ++++ V
Sbjct: 476 LREEDV 481



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 110/217 (50%), Gaps = 2/217 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++DVVSW +MI G+ ++  F EAL+ F+EM +  +  D   F+S I  CA + ALN    
Sbjct: 478 EEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQ 537

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H          +  +  AL+ +Y++CG+ Q A   F+ +   D   WNA+ISG A  G 
Sbjct: 538 IHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGH 597

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F++M    V  +  TF   ++A ++   +++G++    M  +     + E   
Sbjct: 598 CEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQ-IHAMMIKTGYDSETEASN 656

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            ++ L  + G IE+A      M  E +VV W A+++ 
Sbjct: 657 VLITLYSKCGSIEDAKREFFEMP-EKNVVSWNAMITG 692



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 116/219 (52%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D +S+NS+I G  +    D AL+ F +M    ++PD  T AS++  CA +GA    
Sbjct: 274 MHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKG 333

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ +I+  +  + I+  +L+D+Y KC  I+ A E F T +  +V +WN M+      
Sbjct: 334 KQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQL 393

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  +++  IF +M++  ++P+  T+  +L  C+  G ++ G +    +  +   Q  +  
Sbjct: 394 GNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQV-IKSGFQFNVYV 452

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              ++D+  + G ++ A G++  +  E DVV W A+++ 
Sbjct: 453 CSVLIDMYAKHGELDTARGILQRLR-EEDVVSWTAMIAG 490



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 111/217 (51%), Gaps = 4/217 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++VV WN M+  + +     E+   F +M    + P+++T+ S++  C  LGAL+    +
Sbjct: 378 ENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQI 437

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I+   + N  + + LIDMY+K G++  A+ +   ++  DV  W AMI+G   H L 
Sbjct: 438 HTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLF 497

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS-IQPQLEHYG 182
           A+A  +F +ME   +  D+I F   ++AC+    + +G++   H +S  S     L    
Sbjct: 498 AEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQI--HAQSYISGYSEDLSIGN 555

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A+V L  R G  ++AY L        D + W AL+S 
Sbjct: 556 ALVSLYARCGRAQDAY-LAFEKIDAKDNISWNALISG 591



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 110/261 (42%), Gaps = 44/261 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA-LNH 59
           +P  +V  WN +I G +      + L  F  M++  V PD+ TFASV+  C+   A    
Sbjct: 71  IPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQV 130

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  II      + ++   LID+YSK G + +AK VF+ +   D   W AMISG++ 
Sbjct: 131 TEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQ 190

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKY--------------- 164
           +G   +A  +F +M    V+P    F  +L+AC+   L + G +                
Sbjct: 191 NGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFV 250

Query: 165 --------------------FDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
                               F  M  R  I      Y +++  L + G  + A  L   M
Sbjct: 251 CNALVTLYSRWGNLIAAEQIFSKMHRRDRIS-----YNSLISGLAQRGFSDRALQLFEKM 305

Query: 205 T---MEPDVVVWRALLSACRT 222
               M+PD V   +LLSAC +
Sbjct: 306 QLDCMKPDCVTVASLLSACAS 326



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 19/186 (10%)

Query: 43  TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV 102
           T+  +  GC   G+L  A  +H  I +   +   +L + LID+Y   G++  A ++FD +
Sbjct: 12  TYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDI 71

Query: 103 QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR 162
             ++VS WN +ISG+    LA+    +F+ M   NV PD  TF  +L ACS       G+
Sbjct: 72  PSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSG------GK 125

Query: 163 KYFDHMRSRYSIQPQLEHYG---------AMVDLLGRAGHIEEAYGLITSMTMEPDVVVW 213
             F   +    I  ++ H+G          ++DL  + GH++ A  L+       D V W
Sbjct: 126 APF---QVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLA-KLVFERLFLKDSVSW 181

Query: 214 RALLSA 219
            A++S 
Sbjct: 182 VAMISG 187



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K+VVSWN+MI G+ ++    EA+  F EM    + P+  TF  V+  C+ +G +N  
Sbjct: 678 MPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEG 737

Query: 61  Y-WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             +  ++  E  +         ++D+  +   +  A+E  + +    D  +W  ++S   
Sbjct: 738 LSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACT 797

Query: 119 IH 120
           +H
Sbjct: 798 VH 799


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 180/413 (43%), Positives = 247/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M DKDV+SW S++ G V N  ++EALR F EM    + PD+   A+V+  CA L  L   
Sbjct: 28  MTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFG 87

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   ++  +  +  +  +L+ MY+KCG I+ A +VFD+++  DV  W A+I G A +
Sbjct: 88  KQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQN 147

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   ++   +  M    V PD ITF+GLL ACSH GLVE GR YF  M   Y I+P  EH
Sbjct: 148 GRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSMEEVYGIKPGPEH 207

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  M+DLLGR+G + EA  L+  M ++PD  VW+ALL+ACR    +ELGE A  N+  L 
Sbjct: 208 YACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAANNLFELE 267

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             +   YVLLSN+Y    +W+ A   R +MK +GV K  G SW+E++  +H+F + DRSH
Sbjct: 268 PKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSH 327

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    I   +  ++   K  G++P     L D+ EE KE  L +HSEKLA+A+G+L   P
Sbjct: 328 PRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEGKELGLAYHSEKLAVAFGLLTMPP 387

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KNLRIC DCH+ +K +S +  R +I+RD   FH F  G CSC DYW
Sbjct: 388 GAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSNCFHHFREGACSCSDYW 440



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 80/142 (56%), Gaps = 4/142 (2%)

Query: 77  ILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMF 136
           +++ AL+DMY+K G    A +VF+ +   DV  W ++++G   +G   +A  +F +M + 
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 137 NVLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIE 195
            + PD I    +L+AC+   ++E G++ + + ++S   +   L    ++V +  + G IE
Sbjct: 63  GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKS--GLGSSLSVDNSLVSMYAKCGCIE 120

Query: 196 EAYGLITSMTMEPDVVVWRALL 217
           +A  +  SM ++ DV+ W AL+
Sbjct: 121 DANKVFDSMEIQ-DVITWTALI 141


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 177/417 (42%), Positives = 251/417 (60%), Gaps = 7/417 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK--VEPDKFTFASVIYGCARLGALN 58
           + +++VV+W  MIGG  +    ++AL+ F EM+S    V P+ +T + ++  CA L A+ 
Sbjct: 436 LEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIR 495

Query: 59  HAYWVHNLII--EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
               +H  ++   +     + ++  LI+MYSKCG +  A+ VFD++ +     W +M++G
Sbjct: 496 IGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTG 555

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
             +HG  ++A  IF KM     +PD ITFL +L ACSHCG+V++G  YFD M + Y + P
Sbjct: 556 YGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTP 615

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI--- 233
           + EHY   +DLL R G +++A+  +  M MEP  VVW ALLSACR    +EL E A+   
Sbjct: 616 RAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKL 675

Query: 234 VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
           V ++    G Y L+SN+Y    RW     +R +MKK G++K  G SW++       F  G
Sbjct: 676 VEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVG 735

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           DRSHP +  I  +L SLI R K+ G++P T   L DV EEEK   L  HSEKLALAYG+L
Sbjct: 736 DRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLL 795

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T PG  IRI+KNLR+C DCHS    IS+++   I+VRD  RFH F+ G CSCG YW
Sbjct: 796 TTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 852



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 121/269 (44%), Gaps = 51/269 (18%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFD-----------------------------------EA 25
           M  KDVVSWN+M+ G+ ++  F                                    EA
Sbjct: 288 MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEA 347

Query: 26  LRFFREMLSSKVEPDKFTFASVIYGCARLGALN-----HAYWVHNLIIEKKIEL-----N 75
           L  FR+M+ S   P+  T  SV+  CA LGA +     HAY + N ++    +      +
Sbjct: 348 LNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDED 407

Query: 76  FILSAALIDMYSKCGKIQMAKEVFDTV--QRNDVSVWNAMISGVAIHGLAADASAIFTKM 133
            ++  ALIDMYSKC   + A+ +FD +  +  +V  W  MI G A +G + DA  +F +M
Sbjct: 408 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 467

Query: 134 --EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG-AMVDLLGR 190
             E + V P++ T   +L AC+H   +  G++   ++   +            ++++  +
Sbjct: 468 ISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSK 527

Query: 191 AGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            G ++ A  +  SM+ +   + W ++++ 
Sbjct: 528 CGDVDTARHVFDSMS-QKSAISWTSMMTG 555



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 117/267 (43%), Gaps = 30/267 (11%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREML------SSKVEPDKFTFASVIYGCARLGALN 58
           DV+SWNS++   V+++    AL  F +M        +    D  +  +++  C  L A+ 
Sbjct: 185 DVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVP 244

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               VH   I     L+  +  ALID Y+KCG ++ A +VF+ ++  DV  WNAM++G +
Sbjct: 245 QTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYS 304

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
             G    A  +F  M   N+  D +T+  ++   S  G   E    F  M    S+ P  
Sbjct: 305 QSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSL-PNC 363

Query: 179 EHYGAMVDLLGRAGHIEE-----AYGLITSMTM--------EPDVVVWRALL---SACRT 222
               +++      G   +     AY L   +          + D++V+ AL+   S CR+
Sbjct: 364 VTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRS 423

Query: 223 FKR-------LELGEVAIVNISRLMGG 242
           FK        + L E  +V  + ++GG
Sbjct: 424 FKAARSIFDDIPLEERNVVTWTVMIGG 450



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 103/223 (46%), Gaps = 13/223 (5%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           V WN +I   ++  R D A+     ML +    D FT   V+  C  L +       H L
Sbjct: 83  VWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGL 142

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLA 123
           I     E N  +  AL+ MYS+CG ++ A  +FD + +   +DV  WN+++S       A
Sbjct: 143 ICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNA 202

Query: 124 ADASAIFTKMEMF------NVLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQP 176
             A  +F+KM +       N   D I+ + +L AC     V + ++ + + +R+   +  
Sbjct: 203 WTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDV 262

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            + +  A++D   + G +E A  +   M  + DVV W A+++ 
Sbjct: 263 FVGN--ALIDAYAKCGLMENAVKVFNMMEFK-DVVSWNAMVAG 302


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 177/412 (42%), Positives = 260/412 (63%), Gaps = 4/412 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+DVV+W +MI G+V+N  +++AL  FR M++   EP+ +T A+++   + L  L H   
Sbjct: 371 DRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQ 430

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIHG 121
           +H   I+        ++ ALI MY+K G I +AK VFD    + ++  W +MI  +A HG
Sbjct: 431 IHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHG 490

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
           L  +A  +F +M    + PD IT++G+L+AC+H GLVE+GRKY++ M   + I+P L HY
Sbjct: 491 LGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHY 550

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISR 238
             M+DL GRAG ++EAY  I SM +EPD + W +LL++C+  K  +L +VA   ++ I  
Sbjct: 551 ACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDP 610

Query: 239 LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
              G Y+ L+N+Y    +W+ A   R++MK +GVRK +G SW+ +   +H F   D  HP
Sbjct: 611 GNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHP 670

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           +   I K++  + +  K  GF+P TE VL D+ EE KE  L +HSEKLA+A+G+L T   
Sbjct: 671 QKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPEN 730

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T +RI KNLR+C+DCHS IK IS+L+ R IIVRD  RFH F+ G CSC DYW
Sbjct: 731 TALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 131/275 (47%), Gaps = 40/275 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           MPD+D+VSWNSMI G+ +     EAL  F +ML+   ++PD FT AS++  CA L  LN 
Sbjct: 234 MPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNI 293

Query: 60  AYWVHNLIIEKKIE---------------------------------LNFILSAALIDMY 86
              +H  I+  + E                                 LN I   +L+D Y
Sbjct: 294 GKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGY 353

Query: 87  SKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFL 146
           +K G ++ A+E+F+ ++  DV  W AMI G   +GL  DA  +F  M      P+S T  
Sbjct: 354 TKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLA 413

Query: 147 GLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
            +L+  S   ++E G++ +   +++  S  P + +  A++ +  + G+I  A  +     
Sbjct: 414 AMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTN--ALIAMYAKTGNINVAKRVFDLPN 471

Query: 206 MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
            + ++V W +++ A     +  LG+ AI    R++
Sbjct: 472 GKKEIVSWTSMIMA---LAQHGLGKEAINLFERML 503



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 159/351 (45%), Gaps = 61/351 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPD D VSW ++I G+ +   FD A+  F +M+S +V P +FT ++V+  CA    L+  
Sbjct: 102 MPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIG 161

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA-------- 112
             +H+ +++  +     ++ +L++MY+KCG   +AK VFD +   ++S WNA        
Sbjct: 162 RKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQS 221

Query: 113 -----------------------MISGVAIHGLAADASAIFTKM-EMFNVLPDSITFLGL 148
                                  MISG +  G   +A AIF+KM    ++ PD+ T   +
Sbjct: 222 GQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASI 281

Query: 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG----AMVDLLGRAGHIEEAYGLIT-S 203
           L+AC++   +  G++        Y ++ + E  G    A++ +  ++G +E A  ++  +
Sbjct: 282 LSACANLEKLNIGKQIH-----AYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHN 336

Query: 204 MTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNM---YCYLKRWDTA 260
            T   +++ + +LL     + +L   + A    ++L   D V  + M   Y     W+ A
Sbjct: 337 RTSNLNIIAFTSLLDG---YTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDA 393

Query: 261 ENVREIMKKKGVRK-----------SQGKSWLELAGVIH--QFKAGDRSHP 298
             +  +M  +G              S   + LE    IH    KAG+ S P
Sbjct: 394 LELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTP 444



 Score = 46.2 bits (108), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 33/217 (15%)

Query: 44  FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           FA ++    R+        VH  II+K + L   L   L+  Y+K G ++ A  VFD + 
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 104 RNDVSVWNAMISGVAIH-------------------------------GLAADASAIFTK 132
                 WN +ISG A                                 GL  +A  +F K
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 133 MEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAG 192
           M    V P   T   +L++C+    ++ GRK    +  +  +   +    +++++  + G
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFV-VKLGLGSCVPVATSLLNMYAKCG 191

Query: 193 HIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG 229
               A  +   MT++ ++  W AL+S      + EL 
Sbjct: 192 DPVIAKVVFDRMTVK-NISTWNALISLYMQSGQFELA 227


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 177/413 (42%), Positives = 256/413 (61%), Gaps = 5/413 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M   D+V W+S+I GF +N+  DEALR F+ M  +     + T  SV+  C  L  L   
Sbjct: 124 MVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELG 183

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++  K + + IL+ AL+DMY KCG ++ A  VF  +   DV  W+ MI+G+A +
Sbjct: 184 RQVHVHVL--KYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQN 241

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G + +A  +F  M++  + P+ +T +G+L ACSH GLVEEG  YF  M+  + I P  EH
Sbjct: 242 GYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREH 301

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG M+DLLGRAG + EA  LI  M  EPD V WRALL+ACR  + +++   A   I RL 
Sbjct: 302 YGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLD 361

Query: 241 ---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y   +RW+    VR  M  +G++K  G SW+E++  IH F  GDRSH
Sbjct: 362 PQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGDRSH 421

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I+  L  LI +    G++P T  VL D+  E+ + +L +HSEKLA+ +G++    
Sbjct: 422 PQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHSEKLAIVFGLMSLPR 481

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KNLRIC DCH + K+++++ +R+I++RD +R+H F+ GLCSCGD+W
Sbjct: 482 GQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCSCGDFW 534



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 117/219 (53%), Gaps = 7/219 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPD++VVSW +MI  +      D+AL F   ML   V P+ FT++SV+  C  L  L   
Sbjct: 26  MPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPNMFTYSSVLRACDGLFNLRQ- 84

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  II+  ++ +  + +ALID+YS+ G+++ A  VFD +   D+ VW+++I+G A +
Sbjct: 85  --LHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQN 142

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A  +F +M+    L    T   +L AC+   L+E GR+   H+         L  
Sbjct: 143 SDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHV---LKYDQDLIL 199

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++D+  + G +E+A  +   M +E DV+ W  +++ 
Sbjct: 200 NNALLDMYCKCGSLEDANAVFVRM-VEKDVISWSTMIAG 237



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 31/164 (18%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
           LI+MY K G +  A++VFD +   +V  W  MIS  +   L   A      M    V P+
Sbjct: 6   LINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPN 65

Query: 142 SITFLGLLTACS--------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGH 193
             T+  +L AC         HC +++ G      +RS            A++D+  R G 
Sbjct: 66  MFTYSSVLRACDGLFNLRQLHCCIIKIGLDSDVFVRS------------ALIDVYSRWGE 113

Query: 194 IEEAYGLITSMTMEPDVVVWRALLS----------ACRTFKRLE 227
           +E A  +   M +  D+VVW ++++          A R FKR++
Sbjct: 114 LENALRVFDEM-VTGDLVVWSSIIAGFAQNSDGDEALRLFKRMK 156


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 183/413 (44%), Positives = 248/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D V+W +M+GG+  N    EAL  F  M     +PD +T    +  C RLGAL+  
Sbjct: 103 MKNRDAVAWGAMVGGYASNGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLG 162

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                ++   ++  N +L  ALIDMY+KCG    A  VF  +   D+ VWNAMI G+ + 
Sbjct: 163 RQAVGMVHWDEVLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMT 222

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A A+  +M+   V  +  TF+GLL +C+H GLV +GR+YF +M   Y I P++EH
Sbjct: 223 GHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEH 282

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDL  RAG +EEA+ LI  M M  + VVW ALL  C+  +  +L E A+  + RL 
Sbjct: 283 YGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRLE 342

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G+YV+LSN+Y    RW+ A  +R  MK KG+ K    SW+EL G +H+F  GD SH
Sbjct: 343 PWNSGNYVMLSNIYSNSGRWEDAAKLRLEMKAKGIEKVPASSWVELDGKVHKFYVGDDSH 402

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P +  I   L  L    K+ G+ P TE+V+ DV  EEKE  L HHSEK+A+A+ ++ T P
Sbjct: 403 PLSDKIYAKLDELGMEMKAMGYEPTTEVVMFDVENEEKENTLVHHSEKIAIAFSLITTEP 462

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR++KNLR+C DCHS IK+ISR+  R I+VRD  RFH F  G CSC DYW
Sbjct: 463 GETIRVTKNLRVCTDCHSAIKLISRITCREIVVRDNNRFHCFRDGHCSCNDYW 515



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 112/220 (50%), Gaps = 7/220 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGAL--N 58
           MP    VSW ++I  ++      EA+   R   +S + PD FT   V+  CAR+  L   
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
            A W      E   E  F+ +AAL D+Y KCG+++ A+ VFD ++  D   W AM+ G A
Sbjct: 61  EAVWAAARQEEGVAESVFVATAAL-DLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYA 119

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI-QPQ 177
            +G   +A  +F  M+M    PD  T +G L+AC+  G ++ GR+    +     +  P 
Sbjct: 120 SNGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPV 179

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           L    A++D+  + G   EA+ +   M +E D++VW A++
Sbjct: 180 LG--TALIDMYAKCGSTSEAWMVFQQM-LERDIIVWNAMI 216


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 177/417 (42%), Positives = 251/417 (60%), Gaps = 7/417 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK--VEPDKFTFASVIYGCARLGALN 58
           + +++VV+W  MIGG  +    ++AL+ F EM+S    V P+ +T + ++  CA L A+ 
Sbjct: 329 LEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIR 388

Query: 59  HAYWVHNLII--EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
               +H  ++   +     + ++  LI+MYSKCG +  A+ VFD++ +     W +M++G
Sbjct: 389 IGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTG 448

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
             +HG  ++A  IF KM     +PD ITFL +L ACSHCG+V++G  YFD M + Y + P
Sbjct: 449 YGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTP 508

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI--- 233
           + EHY   +DLL R G +++A+  +  M MEP  VVW ALLSACR    +EL E A+   
Sbjct: 509 RAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKL 568

Query: 234 VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
           V ++    G Y L+SN+Y    RW     +R +MKK G++K  G SW++       F  G
Sbjct: 569 VEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVG 628

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           DRSHP +  I  +L SLI R K+ G++P T   L DV EEEK   L  HSEKLALAYG+L
Sbjct: 629 DRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLL 688

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T PG  IRI+KNLR+C DCHS    IS+++   I+VRD  RFH F+ G CSCG YW
Sbjct: 689 TTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 745



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 121/269 (44%), Gaps = 51/269 (18%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFD-----------------------------------EA 25
           M  KDVVSWN+M+ G+ ++  F                                    EA
Sbjct: 181 MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEA 240

Query: 26  LRFFREMLSSKVEPDKFTFASVIYGCARLGALN-----HAYWVHNLIIEKKIEL-----N 75
           L  FR+M+ S   P+  T  SV+  CA LGA +     HAY + N ++    +      +
Sbjct: 241 LNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDED 300

Query: 76  FILSAALIDMYSKCGKIQMAKEVFDTV--QRNDVSVWNAMISGVAIHGLAADASAIFTKM 133
            ++  ALIDMYSKC   + A+ +FD +  +  +V  W  MI G A +G + DA  +F +M
Sbjct: 301 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 360

Query: 134 --EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG-AMVDLLGR 190
             E + V P++ T   +L AC+H   +  G++   ++   +            ++++  +
Sbjct: 361 ISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSK 420

Query: 191 AGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            G ++ A  +  SM+ +   + W ++++ 
Sbjct: 421 CGDVDTARHVFDSMS-QKSAISWTSMMTG 448



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 117/267 (43%), Gaps = 30/267 (11%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREML------SSKVEPDKFTFASVIYGCARLGALN 58
           DV+SWNS++   V+++    AL  F +M        +    D  +  +++  C  L A+ 
Sbjct: 78  DVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVP 137

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               VH   I     L+  +  ALID Y+KCG ++ A +VF+ ++  DV  WNAM++G +
Sbjct: 138 QTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYS 197

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
             G    A  +F  M   N+  D +T+  ++   S  G   E    F  M    S+ P  
Sbjct: 198 QSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSL-PNC 256

Query: 179 EHYGAMVDLLGRAGHIEE-----AYGLITSMTM--------EPDVVVWRALL---SACRT 222
               +++      G   +     AY L   +          + D++V+ AL+   S CR+
Sbjct: 257 VTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRS 316

Query: 223 FKR-------LELGEVAIVNISRLMGG 242
           FK        + L E  +V  + ++GG
Sbjct: 317 FKAARSIFDDIPLEERNVVTWTVMIGG 343



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 13/198 (6%)

Query: 32  MLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK 91
           ML +    D FT   V+  C  L +       H LI     E N  +  AL+ MYS+CG 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 92  IQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMF------NVLPDS 142
           ++ A  +FD + +   +DV  WN+++S       A  A  +F+KM +       N   D 
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 143 ITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
           I+ + +L AC     V + ++ + + +R+   +   + +  A++D   + G +E A  + 
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGN--ALIDAYAKCGLMENAVKVF 178

Query: 202 TSMTMEPDVVVWRALLSA 219
             M  + DVV W A+++ 
Sbjct: 179 NMMEFK-DVVSWNAMVAG 195


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 180/409 (44%), Positives = 250/409 (61%), Gaps = 3/409 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +VVSW S++   V+N R  EA+  FREM S  +EP+  T   V+   A + AL H    H
Sbjct: 256 NVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAH 315

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
              + K    +  + +AL+DMY+KCG+++ A+ +F+ +   +V  WNAMI G A+HG A 
Sbjct: 316 CFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAE 375

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           +A  +F  M+     PD +TF  +L ACS  G  EEGR YF+ M+ ++ I P++EHY  M
Sbjct: 376 NAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACM 435

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---MG 241
           V LLGRAG +++AY +I  M  EPD  +W +LL +CR    + L EVA  N+ +L     
Sbjct: 436 VTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAAENLFQLEPENA 495

Query: 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
           G+YVLLSN+Y   K WD    +R++MK  G++K +G SW+E+   +H   AGD SHP   
Sbjct: 496 GNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWIEIKNKVHMLLAGDSSHPMMA 555

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
           AI + L  L    +  GF P+T+ VL DV E+EK+  L  HSEKLA+A G++ TS GT +
Sbjct: 556 AITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQEKDDILSVHSEKLAVALGLISTSHGTPL 615

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           ++ KNLRIC DCH  +K IS   RR I VRD  RFH F+ G CSC DYW
Sbjct: 616 QVIKNLRICGDCHEAMKFISSFERREIYVRDTNRFHHFKDGKCSCADYW 664



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 81/175 (46%), Gaps = 1/175 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + +V++WN ++ G  R+ R  +A+     M      PD    +  +     +G +     
Sbjct: 118 EPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQ 177

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  +++    L+  ++ ALIDMY KCG+      VFD     DV+  NA+++G++ +  
Sbjct: 178 LHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQ 237

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
            ++A  +F +     +  + +++  ++  C   G   E    F  M+S   I+P 
Sbjct: 238 VSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSE-GIEPN 291



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++VVSWN+MIGG+  +   + A+R FR M SSK +PD  TF  V+  C++ G     
Sbjct: 353 MPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEG 412

Query: 61  YWVHNLIIEKK-IELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
               N +  K  I       A ++ +  + GK+  A ++ + +    D  +W +++    
Sbjct: 413 RSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCR 472

Query: 119 IHG 121
           +HG
Sbjct: 473 VHG 475



 Score = 41.6 bits (96), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 4/149 (2%)

Query: 72  IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFT 131
           +  +  ++++L+  Y + G    A+ V D +    V  W+A+I+  A HG A  A  +  
Sbjct: 51  VSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLE 110

Query: 132 KMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRA 191
           +M    V P+ IT+ GL++  +  G   +       M       P        +  +G  
Sbjct: 111 RMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGE-GFLPDATGVSCALSAVGDV 169

Query: 192 GHI---EEAYGLITSMTMEPDVVVWRALL 217
           G +   E+ +G +       D  V  AL+
Sbjct: 170 GDVAVGEQLHGYVVKAGCRLDACVATALI 198


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  361 bits (926), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 182/413 (44%), Positives = 252/413 (61%), Gaps = 3/413 (0%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            M  KD V+W +M+GG+  N    EAL  F  M +  ++PD +  A  +  C RLGAL+  
Sbjct: 712  MRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLG 771

Query: 61   YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                 ++   +   N +L  ALIDMY+KCG    A  VF  +++ D+ VWNAMI G+ + 
Sbjct: 772  RQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMT 831

Query: 121  GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            G    A A+  +ME   V  +  TF+GLL +C+H GL+++GR+YF +M   Y I P++EH
Sbjct: 832  GHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEH 891

Query: 181  YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
            YG MVDLL RAG ++EA+ L+  M M  + V+  ALL  C+  +  EL E  +  +  L 
Sbjct: 892  YGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLE 951

Query: 240  --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                G+YV+LSN+Y    RW+ A  +R  MK KGV K    SW+E  G +H+F+ GD+SH
Sbjct: 952  PWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSH 1011

Query: 298  PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            P +  I K L  L    K+ G+ P TE+V+ DV +EEKE  L HHSEKLA+A+ +L T P
Sbjct: 1012 PLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGP 1071

Query: 358  GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  IR++KNLR+C DCH+ IK++SR+  R IIVRD  RFH F  G CSC DYW
Sbjct: 1072 GETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1124



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 107/218 (49%), Gaps = 4/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP    V W ++I  ++      EA+   R   ++ + PD FT   V+  CAR+  L   
Sbjct: 611 MPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATG 670

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V     ++ +  +  ++ A +D+Y KCG++  A+EVFD ++  D   W AM+ G A +
Sbjct: 671 ETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASN 730

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR-SRYSIQPQLE 179
           G   +A  +F  M+   + PD     G L+AC+  G ++ GR+    +    +   P L 
Sbjct: 731 GHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG 790

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              A++D+  + G   EA+ +   M  + D++VW A++
Sbjct: 791 --TALIDMYAKCGSTVEAWVVFQQMRKK-DIIVWNAMI 825



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 89/235 (37%), Gaps = 44/235 (18%)

Query: 38  EPDKFTFASVIYGCARLG-ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAK 96
            P   T    +   +RL   L     +H   ++     N  +  +L+ +Y+KCG +  A+
Sbjct: 546 NPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQ 605

Query: 97  EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH-- 154
            VFD +       W A+I+     G   +A  +        + PDS T + +LTAC+   
Sbjct: 606 RVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIA 665

Query: 155 ---------------------------------CGLVEEGRKYFDHMRSRYSIQPQLEHY 181
                                            CG + + R+ FD MR + ++      +
Sbjct: 666 DLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVA-----W 720

Query: 182 GAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGEVAI 233
           GAMV      GH  EA  L  +M    M+PD       LSAC     L+LG  AI
Sbjct: 721 GAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAI 775


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  361 bits (926), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 187/422 (44%), Positives = 259/422 (61%), Gaps = 12/422 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KD++ WN+M+ G+ ++ R  EALR FR ML S VEPD+ +    +   A+LG     
Sbjct: 219 LPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESG 278

Query: 61  YWVHNLIIE---KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRND--VSVWNAMIS 115
            W+H+ +     +++ LN  +  ALIDMY KCG ++ A  VF  +   D  +  WNAM++
Sbjct: 279 RWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVN 338

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           G A+HG + +A A F ++    + P  ITF+G+L ACSH GLV+EGR+ F  M   Y I+
Sbjct: 339 GYAMHGHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIE 398

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMT-MEPDVVVWRALLSACRTFKRLELGE-VA- 232
           P++EHYG MVDLLGRAG +EEA+ L+ SMT  +PD V+W +LL+ACR  K +ELG+ +A 
Sbjct: 399 PKVEHYGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLHKNMELGQRIAD 458

Query: 233 -IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFK 291
            +V       G YVLLSNMY     W     VR +M+  G++K  G S +E+   + +F 
Sbjct: 459 HLVANGLANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEPGCSAVEVGRRVVEFV 518

Query: 292 AGDRSHPEAQAIDKILGSLIQRTKSEGFLPATE---LVLMDVSEEEKEGNLYHHSEKLAL 348
           AGDRSHP A  I   L  +    ++ G +P TE     L D     KE  L  HSEKLAL
Sbjct: 519 AGDRSHPRAAEIYAKLEEVNGMARARGHVPRTELVLHDLDDDDTAAKEQALAVHSEKLAL 578

Query: 349 AYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGD 408
           A+G++ T PGT I+I KNLR C DCH+ +K++S +  R I+ RDR RFH F  G C+CGD
Sbjct: 579 AFGLISTPPGTAIKIVKNLRACADCHAVLKLVSEVTGRKIVFRDRNRFHHFVDGSCTCGD 638

Query: 409 YW 410
           YW
Sbjct: 639 YW 640



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 101/250 (40%), Gaps = 33/250 (13%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARL--GALN 58
           PD   V + S I           AL    EML S  + P   T ++ +  C  L  G   
Sbjct: 89  PDPTAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSASLPACGGLAVGRAL 148

Query: 59  HAYWVHNLIIEKKIELNFILS---------------------------AALIDMYSKCGK 91
           H Y V   +  +      +L                             A++  Y+K G 
Sbjct: 149 HGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAMLTCYAKMGL 208

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           +  A+ +FD +   D+  WNAM+ G   HG  ++A  +F +M    V PD ++ +  L+A
Sbjct: 209 LDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSA 268

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHY--GAMVDLLGRAGHIEEAYGLITSMTM-EP 208
            +  G  E GR     + +  S + +L      A++D+  + G +E+A  +   +   + 
Sbjct: 269 VAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDR 328

Query: 209 DVVVWRALLS 218
           D+V W A+++
Sbjct: 329 DIVAWNAMVN 338


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  361 bits (926), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 182/413 (44%), Positives = 252/413 (61%), Gaps = 3/413 (0%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            M  KD V+W +M+GG+  N    EAL  F  M +  ++PD +  A  +  C RLGAL+  
Sbjct: 688  MRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLG 747

Query: 61   YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                 ++   +   N +L  ALIDMY+KCG    A  VF  +++ D+ VWNAMI G+ + 
Sbjct: 748  RQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMT 807

Query: 121  GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            G    A A+  +ME   V  +  TF+GLL +C+H GL+++GR+YF +M   Y I P++EH
Sbjct: 808  GHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEH 867

Query: 181  YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
            YG MVDLL RAG ++EA+ L+  M M  + V+  ALL  C+  +  EL E  +  +  L 
Sbjct: 868  YGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLE 927

Query: 240  --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                G+YV+LSN+Y    RW+ A  +R  MK KGV K    SW+E  G +H+F+ GD+SH
Sbjct: 928  PWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSH 987

Query: 298  PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            P +  I K L  L    K+ G+ P TE+V+ DV +EEKE  L HHSEKLA+A+ +L T P
Sbjct: 988  PLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGP 1047

Query: 358  GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  IR++KNLR+C DCH+ IK++SR+  R IIVRD  RFH F  G CSC DYW
Sbjct: 1048 GETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1100



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 107/218 (49%), Gaps = 4/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP    V W ++I  ++      EA+   R   ++ + PD FT   V+  CAR+  L   
Sbjct: 587 MPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATG 646

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V     ++ +  +  ++ A +D+Y KCG++  A+EVFD ++  D   W AM+ G A +
Sbjct: 647 ETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASN 706

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR-SRYSIQPQLE 179
           G   +A  +F  M+   + PD     G L+AC+  G ++ GR+    +    +   P L 
Sbjct: 707 GHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG 766

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              A++D+  + G   EA+ +   M  + D++VW A++
Sbjct: 767 --TALIDMYAKCGSTVEAWVVFQQMRKK-DIIVWNAMI 801



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 89/235 (37%), Gaps = 44/235 (18%)

Query: 38  EPDKFTFASVIYGCARLG-ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAK 96
            P   T    +   +RL   L     +H   ++     N  +  +L+ +Y+KCG +  A+
Sbjct: 522 NPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQ 581

Query: 97  EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH-- 154
            VFD +       W A+I+     G   +A  +        + PDS T + +LTAC+   
Sbjct: 582 RVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIA 641

Query: 155 ---------------------------------CGLVEEGRKYFDHMRSRYSIQPQLEHY 181
                                            CG + + R+ FD MR + ++      +
Sbjct: 642 DLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVA-----W 696

Query: 182 GAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGEVAI 233
           GAMV      GH  EA  L  +M    M+PD       LSAC     L+LG  AI
Sbjct: 697 GAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAI 751


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  361 bits (926), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 176/413 (42%), Positives = 262/413 (63%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +KD+V W++MI G+  + +  EAL  F EM    ++PD+ T  SVI  CARLG L+ A
Sbjct: 40  MEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRA 99

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H  + +  +     ++ ALIDMY+KCG +  A+ VF+ +Q  +V  W +MI+  AIH
Sbjct: 100 KWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIH 159

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A++A   F +M+  N+ P+ +TF+G+L ACSH GLVEEGR+ F  M + ++I P+ EH
Sbjct: 160 GDASNALKFFYQMKDENIKPNGVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEH 219

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDL GRA  + +A  L+ +M + P+VV+W +L++AC+     ELGE A   +  L 
Sbjct: 220 YGCMVDLFGRANLLRDALELVETMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELE 279

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G  V LSN+Y   +RW     +R +MK++G+ K +G S +EL   +++F   D+ H
Sbjct: 280 PDHDGALVQLSNIYAKDRRWQDVGELRNLMKQRGISKERGCSRIELNNQVYEFVMADKKH 339

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            +A  I + L  +++  K  G+ P T  VL+DV EE K+  +  HSEKLAL YG++    
Sbjct: 340 KQADKIYEKLDEVVKELKLVGYTPNTRSVLVDVEEEGKKEVVLWHSEKLALCYGLMGEGK 399

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G+ IRI KNLR+C DCH++IK++S++    IIVRDR RFH ++ G+CSC DYW
Sbjct: 400 GSCIRIVKNLRVCEDCHTFIKLVSKVYGMEIIVRDRTRFHHYKAGVCSCNDYW 452



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 83/145 (57%), Gaps = 2/145 (1%)

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           N ++  A+I  YS+ G+++ A+ +FD ++  D+  W+AMISG A      +A  +F++M+
Sbjct: 13  NLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQ 72

Query: 135 MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194
           +F + PD +T L +++AC+  G+++   K+      +  +   L    A++D+  + G++
Sbjct: 73  VFGIKPDQVTILSVISACARLGVLDRA-KWIHMYVDKNGLGGALPVNNALIDMYAKCGNL 131

Query: 195 EEAYGLITSMTMEPDVVVWRALLSA 219
             A G+   M    +V+ W ++++A
Sbjct: 132 GAARGVFEKMQSR-NVISWTSMINA 155


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  361 bits (926), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 176/413 (42%), Positives = 249/413 (60%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVVSW ++I  + +  R DEA+ FF+ ML    +P+      ++  C  LG+    
Sbjct: 510 MLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLG 569

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H + I+  ++   I++ AL+ MY KCG     K VFD+++  D+  WN  I+G A H
Sbjct: 570 QQIHTVAIKHGMDSELIVANALMSMYFKCGCADSHK-VFDSMEERDIFTWNTFITGCAQH 628

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  ++  ME   VLP+ +TF+GLL ACSH GLV+EG ++F  M   Y + P LEH
Sbjct: 629 GLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEH 688

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  MVDLLGR G ++ A   I  M +EPD V+W ALL AC+  K  E+G  A   +    
Sbjct: 689 YACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTE 748

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G+YV+LSN+Y  L  W     +R+IMK++GV K  G SW+++   +H F  GD+ H
Sbjct: 749 PSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQH 808

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            + + ID  L  L    +  G++P TE VL D+ EE+KE +L +HSEKLA+AYG+L T  
Sbjct: 809 EKIEEIDYTLQDLYTLLRGTGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPK 868

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  I+I KNLRIC DCH++IK +S + +R I +RD  RFH F  G CSCGD+W
Sbjct: 869 GMPIQIMKNLRICGDCHTFIKFVSHVTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 108/220 (49%), Gaps = 6/220 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++ +SW  MI G+ +N R +EAL   + +  + + P   +  S    C+ +GAL   
Sbjct: 378 MPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETG 437

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+L ++   + N  +  ALI MY KC  ++  ++VF+ ++  D   WN+ I+ +  +
Sbjct: 438 RQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQN 497

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI--QPQL 178
            +  DA  IF  M    +  D +++  +++A +     +E  ++F  M   +     P L
Sbjct: 498 NMLEDARHIFDNM----LSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPIL 553

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
               ++   LG A   ++ + +     M+ +++V  AL+S
Sbjct: 554 TILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMS 593



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 105/221 (47%), Gaps = 13/221 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +++V+W  MI G+VR  +  +    FR M      PD+  FASV+     L  L   
Sbjct: 183 MPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVL 242

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSK-CGKIQMAKEVFD-TVQRNDVSVWNAMISGVA 118
             +  L+++   E + ++  +++++Y++    + +A + FD  V+RN+ + W+ MI+ ++
Sbjct: 243 EVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYT-WSTMIAALS 301

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            HG   DA+      +    +P       LLT  + CG + E R  F+ +       P +
Sbjct: 302 -HGGRIDAAIAVYGRDPVKSIPSQT---ALLTGLARCGRITEARILFEQIP-----DPIV 352

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             + AM+    + G ++EA  L   M    + + W  +++ 
Sbjct: 353 VSWNAMITGYMQNGMVDEAKELFDRMPFR-NTISWAGMIAG 392



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 20/223 (8%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+++WNSMI  +  +   ++A   F  +    V     T   ++ G ARLG +  A
Sbjct: 59  MPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVR----TATILLSGYARLGRVLDA 114

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V + + E+    N +   A++  Y + G I MA+ +FD +   DV+ WN+M++G    
Sbjct: 115 RRVFDGMPER----NTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHS 170

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY--SIQPQL 178
               DA  +F +M   N++  ++   G +        +E+  K +D  R  +     P  
Sbjct: 171 RQMVDAWNLFKQMPQRNLVTWTVMISGYVR-------IEQHGKGWDIFRMMHHEGASPDQ 223

Query: 179 EHYGAM---VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
            ++ ++   V  L   G +E    L+     E DVV+  ++L+
Sbjct: 224 SNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILN 266



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 112/257 (43%), Gaps = 42/257 (16%)

Query: 3   DKDVVSWNSMIGGFVRNAR-FDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           + DVV   S++  + R+A   D A++FF  M    VE +++T++++I   +  G ++ A 
Sbjct: 255 ESDVVIGTSILNVYTRDASALDIAIKFFDGM----VERNEYTWSTMIAALSHGGRIDAAI 310

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            V+     K I        AL+   ++CG+I  A+ +F+ +    V  WNAMI+G   +G
Sbjct: 311 AVYGRDPVKSIPSQ----TALLTGLARCGRITEARILFEQIPDPIVVSWNAMITGYMQNG 366

Query: 122 LAADASAIFTKMEMFNVLP---------------DSITFLGLL----------------T 150
           +  +A  +F +M   N +                +++  L  L                 
Sbjct: 367 MVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFL 426

Query: 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
           ACSH G +E GR+    +  +   Q       A++ + G+  ++E    +   M ++ D 
Sbjct: 427 ACSHIGALETGRQVHS-LAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVK-DT 484

Query: 211 VVWRALLSACRTFKRLE 227
           V W + ++A      LE
Sbjct: 485 VSWNSFIAALVQNNMLE 501



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 10/140 (7%)

Query: 80  AALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVL 139
           +A I   ++ G+++ A+EVFD +   D+  WN+MIS     G+  DA  +F  +   NV 
Sbjct: 37  SARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVR 96

Query: 140 PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199
             +I    LL+  +  G V + R+ FD M  R ++      + AMV    + G I  A  
Sbjct: 97  TATI----LLSGYARLGRVLDARRVFDGMPERNTVA-----WNAMVSCYVQNGDITMARR 147

Query: 200 LITSMTMEPDVVVWRALLSA 219
           L  +M    DV  W ++++ 
Sbjct: 148 LFDAMPSR-DVTSWNSMVTG 166


>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Vitis vinifera]
          Length = 573

 Score =  361 bits (926), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 184/414 (44%), Positives = 264/414 (63%), Gaps = 5/414 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P +DV +WN++I G  + ++  EAL  F  M +   + ++ +    +  C++LGAL   
Sbjct: 161 IPLRDVAAWNALIAGLAQGSKSSEALALFNRMRAEGEKINEISVLGALAACSQLGALRAG 220

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
             VH  + +  +++N  +  A+IDMY+KCG       VF T+     V  WN MI   A+
Sbjct: 221 EGVHACVRKMDLDINVQVCNAVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAM 280

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG    A  +F +M    V  DS+T+L +L AC+H GLVEEG + FD M  R  +   ++
Sbjct: 281 HGDGCRALELFEEMGKTQVEMDSVTYLAVLCACNHAGLVEEGVRLFDEMVGR-GVNRNVK 339

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HYG++VDLLGRAG + EAY +I SM + PDVV+W++LL AC+T+  +E+ E+A   +V +
Sbjct: 340 HYGSVVDLLGRAGRLGEAYRIINSMPIVPDVVLWQSLLGACKTYGNVEMAEMASRKLVEM 399

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                GD+VLLSN+Y   +RW+    VRE MK + VRK  G S++E+ GVIH+F  GD+S
Sbjct: 400 GSNSCGDFVLLSNVYAARERWEDVGRVREAMKSRDVRKVPGFSYIEVEGVIHKFVNGDQS 459

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+ + I   L  +  R K+ G++  T LVL D+ EE+KE  L HHSEKLA+A+G++ TS
Sbjct: 460 HPDWREIYAKLDEIRFRIKAFGYVAETSLVLHDIGEEDKENALCHHSEKLAVAFGLISTS 519

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            GT IR++KNLRIC DCH  IK+IS++  + IIVRDR RFHRF+ G CSC DYW
Sbjct: 520 EGTPIRVNKNLRICGDCHVVIKLISKIYDQEIIVRDRARFHRFKDGSCSCRDYW 573



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 115/234 (49%), Gaps = 12/234 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P      +N+++ G  R      AL F    LS+ + PD  TF+  +   AR  AL+  
Sbjct: 64  IPHPSTNDFNALLRGLARGPHPTHALTF----LSTILHPDALTFSFSLIASARALALSET 119

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ ++ +    + +L   LID Y+KCG +  A+ VFD +   DV+ WNA+I+G+A  
Sbjct: 120 SQIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALIAGLAQG 179

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
             +++A A+F +M       + I+ LG L ACS  G +  G      +R +  +   ++ 
Sbjct: 180 SKSSEALALFNRMRAEGEKINEISVLGALAACSQLGALRAGEGVHACVR-KMDLDINVQV 238

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA-------CRTFKRLE 227
             A++D+  + G  ++ + + ++MT    VV W  ++ A       CR  +  E
Sbjct: 239 CNAVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFE 292


>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Brachypodium distachyon]
          Length = 635

 Score =  361 bits (926), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 176/413 (42%), Positives = 257/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D VSW++++GG+V+    D AL  FR+M+   V  ++    + +   A++G L H 
Sbjct: 223 MPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVVTALSAAAQMGLLEHG 282

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            +VH ++    + ++  + AAL+DM+SKCG + +A+EVFD + R DV  WNAMI G+A H
Sbjct: 283 RFVHEVVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNAMICGLASH 342

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  DA  +F +     + P  ITF+G+L ACS CGLV EGR+YF  M  +Y I+P++EH
Sbjct: 343 GLGQDAVELFWRFLDEGLWPTDITFVGVLNACSRCGLVAEGRRYFKLMVDKYRIEPEMEH 402

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDLLGRAG + EA  LI  M + PD V+W  +LSAC+T   ++LG      ++ + 
Sbjct: 403 YGCMVDLLGRAGLVSEAIELIEGMHIAPDPVLWGTVLSACKTHNLVDLGITVGNKLIELE 462

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLL+++Y   K+WD    VR++M  +G  KS G S +E  G +H+F  GD  H
Sbjct: 463 PAHDGHYVLLASIYAKAKKWDEVREVRKLMSSRGTGKSAGWSLMEAQGNLHKFLVGDMDH 522

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            ++  I  +L  + +R    G++P    VL D+ +EEK   +  HSE+LA+AYG + T  
Sbjct: 523 KDSVQIYNMLDMINRRLADAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVTEV 582

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G+ IRI KNL++C DCH + KM++++  R IIVRD  RFH  + G CSC DYW
Sbjct: 583 GSPIRIVKNLQVCGDCHEFSKMVTKVFNREIIVRDGSRFHHMKEGKCSCLDYW 635



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 85/230 (36%), Gaps = 43/230 (18%)

Query: 26  LRFFREMLSSKVEPDKFTFASVIYGCARLGALNH------AYWVHNLIIEKKIELNFILS 79
           LR F  +    +    F  AS+      L A +H         VH L ++     +  + 
Sbjct: 112 LRLFPNLPRRNLHSFTFLLASI---SNHLDATDHRASSFLGSHVHALAVKAGAAGDLYVR 168

Query: 80  AALIDMYSKCGKIQMAKEVFDTVQR-NDVSVWNAMISGVAIHGLAADASAIFTKMEM--- 135
            AL   Y  CG +   + VFD + R  DV  WNA+++G    G+   A  +F +M +   
Sbjct: 169 NALTHFYGVCGDVGAMRTVFDELPRVRDVVTWNAVLAGYVRAGMVRAAREVFEEMPVRDE 228

Query: 136 -------------------FNVLPDSI---------TFLGLLTACSHCGLVEEGRKYFDH 167
                                V  D +           +  L+A +  GL+E GR +   
Sbjct: 229 VSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVVTALSAAAQMGLLEHGR-FVHE 287

Query: 168 MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           +  R  +   +    A+VD+  + G +  A  +   M    DV  W A++
Sbjct: 288 VVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRR-DVFAWNAMI 336


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  361 bits (926), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 181/414 (43%), Positives = 252/414 (60%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           MP +++VSWN+++ G+V+N+R  +ALR F+ M+    V+P+  T +SV+ GC+ L AL  
Sbjct: 192 MPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGF 251

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              VH   ++  +  +  +  +L+ MY KCG +  A ++FD +   D+  WNAMISG A 
Sbjct: 252 GRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQ 311

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG    A  +F KM+   V+PD IT L +LTAC H GL + G + F+ M+  Y+I+PQ++
Sbjct: 312 HGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQVD 371

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HY  MVDLL RAG +E A  +I SM  EP    +  LL+ACR +K LE  E A   ++  
Sbjct: 372 HYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQ 431

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YV L+N+Y    RWD    VR  MK   V K+ G SW+E+ GV H+F++ DR 
Sbjct: 432 DPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRL 491

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+   I   L  L +  K+ G+ P  +  L DV E  K   L  HSEKLA+A+G++ TS
Sbjct: 492 HPQLDLIHDKLDRLGKLMKAMGYSPDLDFALHDVEESLKSQMLMRHSEKLAIAFGLISTS 551

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PG  +RI KNLRIC DCH+  K+IS++  R II+RD  RFH F GG CSCGDYW
Sbjct: 552 PGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 605



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 102/219 (46%), Gaps = 10/219 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DV SWN+M+ G  +N   +EA   FR M +     +  ++ +++   A  G +  A
Sbjct: 98  MPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPAR----NAVSWNAMVAARASSGDMGAA 153

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
               NL      + + IL  A++  Y   G +Q A E F  +   ++  WNA+++G   +
Sbjct: 154 ---ENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKN 210

Query: 121 GLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
             A DA  +F  M E   V P+  T   +L  CS+   +  GR+       +  +   + 
Sbjct: 211 SRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCM-KLPLGRSIT 269

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
              +++ +  + G +++A  L   M  + D+V W A++S
Sbjct: 270 VGTSLLSMYCKCGDLDDACKLFDEMHTK-DIVAWNAMIS 307



 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 13/128 (10%)

Query: 95  AKEVFDTVQRNDVSVWNAMISGVAI---HGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           A+E F + Q    + +N +++G A     G  ADA  +F  +      PD++++  LL+ 
Sbjct: 26  AEEAFASTQLKTTTTYNCLLAGYAKASGPGRLADARRLFDSIPH----PDAVSYNTLLSC 81

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
              CG ++   + F  M  R      +  +  MV  L + G IEEA  +  +M    + V
Sbjct: 82  HFACGDIDGAWRVFSTMPVR-----DVTSWNTMVSGLSKNGAIEEAEAMFRAMPAR-NAV 135

Query: 212 VWRALLSA 219
            W A+++A
Sbjct: 136 SWNAMVAA 143



 Score = 45.1 bits (105), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 19/168 (11%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
           L+  +  CG I  A  VF T+   DV+ WN M+SG++ +G   +A A+F  M   N    
Sbjct: 78  LLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARN---- 133

Query: 142 SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
           ++++  ++ A +  G +      F +   +         + AMV      G++++A    
Sbjct: 134 AVSWNAMVAARASSGDMGAAENLFRNAPEKTDAI----LWTAMVSGYMDTGNVQKAMEYF 189

Query: 202 TSMTMEPDVVVWRALLS----------ACRTFKRLELGEVAIVNISRL 239
            +M +  ++V W A+++          A R FK +    +   N S L
Sbjct: 190 RAMPVR-NLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTL 236


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  361 bits (926), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 180/409 (44%), Positives = 251/409 (61%), Gaps = 4/409 (0%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           VV++N++I    RN+R +EAL  FRE+  S ++P   T    +  CA LGAL+   W+H 
Sbjct: 201 VVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHE 260

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
            + +   +    ++ ALIDMY+KCG +  A  VF  + R D   W+AMI   A HG  + 
Sbjct: 261 YVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQ 320

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           A ++  +M+   V PD ITFLG+L ACSH GLVEEG +YF  M   Y I P ++HYG M+
Sbjct: 321 AISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMI 380

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---MGG 242
           DLLGRAG +EEA   I  + ++P  ++WR LLS+C +   +E+ ++ I  I  L    GG
Sbjct: 381 DLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDSHGG 440

Query: 243 DYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQA 302
           DYV+LSN+     RWD   ++R++M  KG  K  G S +E+  V+H+F +GD  H  +  
Sbjct: 441 DYVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVNNVVHEFFSGDGVHSTSTI 500

Query: 303 IDKILGSLIQRTKSEGFLPATELVL-MDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
           +   L  L++  K  G++P T LV   D+ +EEKE  L +HSEKLA+ YG+L T PGT I
Sbjct: 501 LHHALDELVKELKLAGYVPDTSLVFYADIEDEEKEIVLRYHSEKLAITYGLLNTPPGTTI 560

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           R+ KNLR+C DCH+  K IS +  R II+RD  RFH F+ G CSCGDYW
Sbjct: 561 RVVKNLRVCVDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 609



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 119/225 (52%), Gaps = 8/225 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALR---FFREMLSSKVEPDKFTFASVIYGCARLGAL 57
           +P  D+V +N+M  G+   ARFD+ LR      ++L S + PD +TF+S++  CARL AL
Sbjct: 95  IPQPDIVLFNTMARGY---ARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACARLKAL 151

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
                +H L ++  +  N  +   LI+MY+ C  +  A+ VFD +    V  +NA+I+  
Sbjct: 152 EEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAIITSC 211

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           A +    +A A+F +++   + P  +T L  L++C+  G ++ GR   ++++ +      
Sbjct: 212 ARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVK-KNGFDQY 270

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRT 222
           ++   A++D+  + G +++A  +   M    D   W A++ A  T
Sbjct: 271 VKVNTALIDMYAKCGSLDDAVSVFKDMPRR-DTQAWSAMIVAYAT 314



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D  +W++MI  +  +    +A+   REM  +KV+PD+ TF  ++Y C+  G +   
Sbjct: 297 MPRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEG 356

Query: 61  Y-WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV-WNAMISGVA 118
           Y + H++  E  I  +      +ID+  + G+++ A +  D +      + W  ++S  +
Sbjct: 357 YEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCS 416

Query: 119 IHG 121
            HG
Sbjct: 417 SHG 419



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 87/196 (44%), Gaps = 15/196 (7%)

Query: 31  EMLSSKVEPDKFTFASVIYGCARLGALNH--AYWV----HNLIIEKKIELNFILSAALID 84
           E  ++ +EP   +  S+I  C  L  L    AY +    +N  +  K+ +NF  S   I 
Sbjct: 25  EPNTAALEPPSSSILSLIPKCTSLRELKQIQAYTIKTHQNNPTVLTKL-INFCTSNPTI- 82

Query: 85  MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSIT 144
                  +  A  +FD + + D+ ++N M  G A       A  + +++    +LPD  T
Sbjct: 83  -----ASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYT 137

Query: 145 FLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
           F  LL AC+    +EEG++    +  +  +   +     ++++      ++ A  +   +
Sbjct: 138 FSSLLKACARLKALEEGKQ-LHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKI 196

Query: 205 TMEPDVVVWRALLSAC 220
             EP VV + A++++C
Sbjct: 197 G-EPCVVAYNAIITSC 211


>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  360 bits (925), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 174/420 (41%), Positives = 276/420 (65%), Gaps = 11/420 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP + +VSWN MI  +V++  F+ AL+ F EM +S  EPD +T  S++  CA +GAL+  
Sbjct: 187 MPLRSLVSWNVMIDAYVQSGLFENALKLFVEMQNS-FEPDGYTMQSIVSACAGIGALSLG 245

Query: 61  YWVHNLIIEKK---IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
            W H  ++ K    +  + +++++L+DMYSKCG ++MA++VF+T+ ++D++ WN+MI  +
Sbjct: 246 MWAHAYVLRKASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILAL 305

Query: 118 AIHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
           A+HG    A   F+++ EM   LP+S+TF+G+L+AC+H G+V +GRKYFD M + Y I+P
Sbjct: 306 AMHGRGQAALQCFSRLVEMEKFLPNSVTFVGVLSACNHGGMVADGRKYFDMMVNDYKIEP 365

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC-RTFKRLELGEVAIVN 235
           +LEHYG +VDLL R+G I+EA  L+ +M ++PD V+WR+LL AC +    +EL E     
Sbjct: 366 RLEHYGCLVDLLSRSGFIDEALELVANMHIKPDAVIWRSLLDACYKQNAGVELSEEVAFK 425

Query: 236 I----SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFK 291
           I      +  G YV+LS +Y   ++W+    +R++M   GV K  G S +E+ G+ H+F 
Sbjct: 426 ILQSEKTISSGVYVMLSRVYASARQWNDVGIIRKVMTDMGVTKEPGCSSIEIDGISHEFF 485

Query: 292 AGDRSHPEAQAIDKILGSLIQRTKSEGFLP-ATELVLMDVSEEEKEGNLYHHSEKLALAY 350
           AGD SHP  + I  ++  + ++ +  G+ P  ++  ++D  +  K+ +L  HSE+LA+A+
Sbjct: 486 AGDTSHPRIKEIYGVIDLIEEKLERRGYSPDCSQATMVDEPDNIKQQSLKLHSERLAIAF 545

Query: 351 GILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G+L   PGT +RI KNLR+C+DCH   K+IS +    II+RDR RFH F+ G+CSC D+W
Sbjct: 546 GLLNLKPGTPVRIFKNLRVCNDCHQVTKLISEIFNVEIIMRDRNRFHHFKHGMCSCMDFW 605



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 117/236 (49%), Gaps = 9/236 (3%)

Query: 9   WNSMIGGFVRNA-RFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           WN++IG   R+  R ++A+  F  ML    VEPDK TF  ++  CA + AL+     H  
Sbjct: 92  WNTLIGACARSLDRKEQAIEIFYRMLEEGSVEPDKHTFPFLLKACAYVFALSEGRQAHAQ 151

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           I +  ++L+  +  +LI +Y+ CG + MA +VF+ +    +  WN MI      GL  +A
Sbjct: 152 IFKLGLDLDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMIDAYVQSGLFENA 211

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS--IQPQLEHYGAM 184
             +F +M+  +  PD  T   +++AC+  G +  G     ++  + S  +   +    ++
Sbjct: 212 LKLFVEMQN-SFEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKASGAMAGDVLINSSL 270

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           VD+  + G +  A  +  +M  + D+  W +++ A     R   G+ A+   SRL+
Sbjct: 271 VDMYSKCGSLRMAQQVFETMP-KHDLNSWNSMILALAMHGR---GQAALQCFSRLV 322


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  360 bits (925), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 178/413 (43%), Positives = 256/413 (61%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  + +VSWN+MI GF +N R  +AL +F +M S  V+PD FT+ SVI   A L   +HA
Sbjct: 398 LQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHA 457

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H +++   ++ N  ++ AL+DMY+KCG I +A+ +FD +    V+ WNAMI G   H
Sbjct: 458 KWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTH 517

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +M+   + P+ +TFL +++ACSH GLVE G K F  M+  YSI+  ++H
Sbjct: 518 GFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDH 577

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YGAMVDLLGRAG + EA+  I  M ++P V V+ A+L AC+  K +   E A   +  L 
Sbjct: 578 YGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELN 637

Query: 241 ---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              GG +VLL+N+Y     W+    VR  M ++G+RK+ G S +E+   +H F +G  +H
Sbjct: 638 PDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAH 697

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+++ I   L  LI   K  G++P T LVL  V  + KE  L  HSEKLA+++G+L T+ 
Sbjct: 698 PDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTA 756

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT I + KNLR+C DCH+  K IS +  R I+VRD  RFH F+ G CSCGDYW
Sbjct: 757 GTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 113/222 (50%), Gaps = 2/222 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++VVSWNSMI  +V+N    EA+  F++ML   V+P   +    ++ CA LG L   
Sbjct: 297 MLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERG 356

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            ++H L +E  ++ N  +  +LI MY KC ++  A  +F  +Q   +  WNAMI G A +
Sbjct: 357 RFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQN 416

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA   F++M    V PD+ T++ ++TA +   +     K+   +  R  +   +  
Sbjct: 417 GRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHA-KWIHGVVMRSCLDKNVFV 475

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRT 222
             A+VD+  + G I  A  LI  M  E  V  W A++    T
Sbjct: 476 TTALVDMYAKCGAIMIAR-LIFDMMSERHVTTWNAMIDGYGT 516



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 110/214 (51%), Gaps = 4/214 (1%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           V +++M+ GF + +  D+AL+FF  M    VEP  + F  ++  C     L     +H L
Sbjct: 101 VLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGL 160

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           +++    L+      L +MY+KC ++  A++VFD +   D+  WN +++G + +G+A  A
Sbjct: 161 LVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMA 220

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMV 185
             +   M   N+ P  IT + +L A S   L+  G++   + MRS +     +    A+V
Sbjct: 221 LEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNIS--TALV 278

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           D+  + G +E A  L   M +E +VV W +++ A
Sbjct: 279 DMYAKCGSLETARQLFDGM-LERNVVSWNSMIDA 311



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 109/220 (49%), Gaps = 8/220 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D+VSWN+++ G+ +N     AL   + M    ++P   T  SV+   + L  ++  
Sbjct: 196 MPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVG 255

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   +    +    +S AL+DMY+KCG ++ A+++FD +   +V  WN+MI     +
Sbjct: 256 KEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQN 315

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A  IF KM    V P  ++ +G L AC+  G +E GR +   +     +   +  
Sbjct: 316 ENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR-FIHKLSVELGLDRNVSV 374

Query: 181 YGAMVDLLGRAGHIEEA---YGLITSMTMEPDVVVWRALL 217
             +++ +  +   ++ A   +G + S T+    V W A++
Sbjct: 375 VNSLISMYCKCKEVDTAASMFGKLQSRTL----VSWNAMI 410


>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 572

 Score =  360 bits (925), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 187/417 (44%), Positives = 258/417 (61%), Gaps = 7/417 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVVSW SMIGG V +    EA+  F  ML   VE ++ T  SV+  CA  GAL+  
Sbjct: 156 MPHRDVVSWTSMIGGLVNHDLPVEAINLFERMLQCGVEVNEATVISVLRACADSGALSMG 215

Query: 61  YWVHNLIIEKKIELNFI--LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
             VH  + E  IE++    +S AL+DMY+K G I  A++VFD V   DV VW AMISG+A
Sbjct: 216 RKVHANLEEWGIEIHSKSNVSTALVDMYAKGGCIASARKVFDDVVHRDVFVWTAMISGLA 275

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            HGL  DA  +F  ME   V PD  T   +LTAC + GL+ EG   F  ++ RY ++P +
Sbjct: 276 SHGLCKDAIDMFVDMESSGVKPDERTVTAVLTACRNAGLIREGFMLFSDVQRRYGMKPSI 335

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE-----VAI 233
           +H+G +VDLL RAG ++EA   + +M +EPD V+WR L+ AC+     +  E     + I
Sbjct: 336 QHFGCLVDLLARAGRLKEAEDFVNAMPIEPDTVLWRTLIWACKVHGDADRAERLMKHLEI 395

Query: 234 VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
            ++     G Y+L SN+Y    +W     VRE+M KKG+ K  G S +E+ G +H+F  G
Sbjct: 396 QDMRADDSGSYILASNVYASTGKWCNKAEVRELMNKKGLVKPPGTSRIEVDGGVHEFVMG 455

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           D +HPEA+ I   L  ++ + + EG+ P    VL+++ +EEK   L HHSEKLALAYG++
Sbjct: 456 DYNHPEAEEIFVELAEVVDKIRKEGYDPRVSEVLLEMDDEEKAVQLLHHSEKLALAYGLI 515

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           +   G+ IRI KNLR C DCH ++K+IS++ +R IIVRDRIRFH F+ G CSC DYW
Sbjct: 516 RIGHGSTIRIVKNLRSCEDCHEFMKLISKIYKRDIIVRDRIRFHHFKNGECSCKDYW 572



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 96/219 (43%), Gaps = 2/219 (0%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P  +   +N+++  F +              LS    PD FTF  ++  C+R        
Sbjct: 56  PTLNSYYYNTLLRAFSQTPLPTPPFHALSLFLSMPSPPDNFTFPFLLKCCSRSKLPPLGK 115

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H L+ +     +  +   L+ MYS+ G + +A+ +FD +   DV  W +MI G+  H 
Sbjct: 116 QLHALLTKLGFAPDLYIQNVLLHMYSEFGDLLLARSLFDRMPHRDVVSWTSMIGGLVNHD 175

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLEH 180
           L  +A  +F +M    V  +  T + +L AC+  G +  GRK   ++      I  +   
Sbjct: 176 LPVEAINLFERMLQCGVEVNEATVISVLRACADSGALSMGRKVHANLEEWGIEIHSKSNV 235

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A+VD+  + G I  A  +   +    DV VW A++S 
Sbjct: 236 STALVDMYAKGGCIASARKVFDDVVHR-DVFVWTAMISG 273


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  360 bits (925), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 186/418 (44%), Positives = 253/418 (60%), Gaps = 14/418 (3%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK--VEPDKFTFASVIYGCARLGALN-- 58
           DK+VV+W  MIGG+ ++   ++AL+ F ++   K  ++P+ FT +  +  CARLG L   
Sbjct: 442 DKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLG 501

Query: 59  ---HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
              HAY + N   E + E+ ++    LIDMYSK G I  A+ VFD ++  +V  W ++++
Sbjct: 502 RQLHAYALRN---ENESEVLYV-GNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMT 557

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           G  +HG   +A  +F +M+      D ITFL +L ACSH G+V++G  YF  M   + I 
Sbjct: 558 GYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGIT 617

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVN 235
           P  EHY  MVDLLGRAG + EA  LI +M+MEP  VVW ALLSA R    +ELGE A   
Sbjct: 618 PGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASK 677

Query: 236 ISRLMG---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKA 292
           ++ L     G Y LLSN+Y   +RW     +R +MK  G+RK  G SW++       F  
Sbjct: 678 LTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFV 737

Query: 293 GDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGI 352
           GDRSHPE++ I  +L  LI+R K  G++P T   L DV +EEK   L+ HSEKLA+AYGI
Sbjct: 738 GDRSHPESEQIYNLLLDLIKRIKDMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAVAYGI 797

Query: 353 LKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           L T+PG  IRI KNLRIC DCHS +  IS ++   I++RD  RFH F+ G CSC  YW
Sbjct: 798 LTTAPGQPIRIHKNLRICGDCHSALTYISMIIDHEIVLRDSSRFHHFKKGSCSCRSYW 855



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 121/226 (53%), Gaps = 12/226 (5%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           DV++W+++I G+ +     EAL  FR+M    +EP+  T AS++ GCA +GAL +    H
Sbjct: 334 DVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTH 393

Query: 65  NLIIEKKIELNF-------ILSAALIDMYSKCGKIQMAKEVFDTVQRND--VSVWNAMIS 115
             +I+  + LN+       ++   LIDMY+KC   ++A+ +FD+++  D  V  W  MI 
Sbjct: 394 AYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIG 453

Query: 116 GVAIHGLAADASAIFTKM--EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
           G A HG A DA  +F ++  +  ++ P++ T    L AC+  G +  GR+   +     +
Sbjct: 454 GYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNEN 513

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               L     ++D+  ++G I+ A  +  +M +  +VV W +L++ 
Sbjct: 514 ESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLR-NVVSWTSLMTG 558



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 142/327 (43%), Gaps = 57/327 (17%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREM---LSSKVEPDKFTFASVIYGCARLGALNHA 60
           +D+VSWNS++  +V+  +   ALR    M    S K+ PD  T  +++  CA + AL H 
Sbjct: 194 EDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHG 253

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   +   +  +  +  AL+ MY+KC K+  A +VF+ +++ DV  WNAM++G +  
Sbjct: 254 KQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQI 313

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A ++F  M+  ++  D IT+  ++   +  G    G +  D  R       Q++ 
Sbjct: 314 GSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKG---HGFEALDVFR-------QMQL 363

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE----VAIVNI 236
           YG                       +EP+VV   +LLS C +   L  G+      I NI
Sbjct: 364 YG-----------------------LEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNI 400

Query: 237 SRLMGGD-----YVL--LSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQ 289
             L   D      VL  L +MY   K +  A ++ + ++ K        +W  + G    
Sbjct: 401 LNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGK---DKNVVTWTVMIG---- 453

Query: 290 FKAGDRSHPEAQAIDKILGSLIQRTKS 316
              G   H EA    K+   + ++  S
Sbjct: 454 ---GYAQHGEANDALKLFAQIFKQKTS 477



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 102/217 (47%), Gaps = 8/217 (3%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           WN++I   V+    D+ L F+ +M      PD +TF  V+  C  + +L H   VH ++ 
Sbjct: 95  WNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVC 154

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV---QRNDVSVWNAMISGVAIHGLAAD 125
              +  N  +  +++ MY +CG +  A ++FD V   +  D+  WN++++     G +  
Sbjct: 155 ANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRT 214

Query: 126 ASAIFTKMEMFNVL---PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A  I  +M     L   PD+IT + +L AC+    ++ G++       R  +   +    
Sbjct: 215 ALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHG-FSVRNGLVDDVFVGN 273

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A+V +  +   + EA  +   +  + DVV W A+++ 
Sbjct: 274 ALVSMYAKCSKMNEANKVFEGIK-KKDVVSWNAMVTG 309


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  360 bits (925), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 177/415 (42%), Positives = 266/415 (64%), Gaps = 8/415 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYW 62
           +DVV+WN MI   +     ++A     EM     + PD+ T  S++  CA+LG L    +
Sbjct: 175 RDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKF 234

Query: 63  VHNLIIE-KKIELN--FILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
           +H+   E  K E+N   +L  AL+DMY+KCG I +A +VF  ++  +V  WNA+I G+A+
Sbjct: 235 LHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAM 294

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   DA ++F +ME   ++PD +TF+ LL ACSH GLV+EG   F  M++++ I+P++E
Sbjct: 295 HGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRME 354

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HYG +VDLL RA  +++A   I +M ++ + V+W  LL ACR+    +L E     ++ +
Sbjct: 355 HYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIEL 414

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YV+LSN+Y  + +WD A  +R+ MK KG+ K+ G SW+EL G+IHQF AGDRS
Sbjct: 415 EPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRS 474

Query: 297 HPEAQAIDKILGSLIQRTKSE-GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           H + + I  ++  + +R   + G +P T  VL D+ EEEKE +L+ HSEKLA+A G++ T
Sbjct: 475 HLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLIST 534

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             G+ IRI KNLR+C+DCHS++K+ S++  R I+ RDR RFH F+ G CSC D+W
Sbjct: 535 PSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 589



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 106/220 (48%), Gaps = 4/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M + D    N+MI G+ R+    EA+  +  M+   V  D +T+  V+  CARLGA+   
Sbjct: 71  MQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLG 130

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H  +++     +  +  ALI  Y  CG    A +VFD     DV  WN MI+     
Sbjct: 131 RRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNK 190

Query: 121 GLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR--SRYSIQPQ 177
           GL+  A  +  +M ++ N+ PD +T + L+ AC+  G +E G+    + +   ++ I   
Sbjct: 191 GLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCD 250

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           L    A+VD+  + G I+ A  +   M +  +V  W AL+
Sbjct: 251 LVLETALVDMYAKCGSIDLALQVFRRMRVR-NVFTWNALI 289



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 36/203 (17%)

Query: 64  HNLIIEKKIELNFILSAALIDMY--SKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           H L++   +  N + S+ LI     S  G +  A+++F  +Q  D  + N MI G A   
Sbjct: 31  HALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQ 90

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR------YSIQ 175
              +A +++  M    V  D+ T+  +L AC+  G V+ GR++   +         + I 
Sbjct: 91  NPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVIN 150

Query: 176 PQLEHY------GAMVDLLGRA------------------GHIEEAYGLITSMT----ME 207
             ++ Y      G   D+   +                  G  E+A+ L+  MT    + 
Sbjct: 151 ALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLR 210

Query: 208 PDVVVWRALLSACRTFKRLELGE 230
           PD V   +L+ AC     LE G+
Sbjct: 211 PDEVTMVSLVPACAQLGNLERGK 233


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  360 bits (925), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 182/411 (44%), Positives = 268/411 (65%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K+ V+WN++I G+V+    ++AL  F  ML   ++P + T++SV+   A L AL     
Sbjct: 370 EKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQ 429

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+L I+     + +++ +LIDMY+KCG+I  A+  FD + + D   WNA+I G +IHGL
Sbjct: 430 IHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGL 489

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F  M+  N  P+ +TF+G+L+ACS+ GL+++GR +F  M   Y I+P +EHY 
Sbjct: 490 GMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYT 549

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            MV LLGR+G  +EA  LI  +  +P V+VWRALL AC   K L+LG+V    +  +   
Sbjct: 550 CMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQ 609

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           D   +VLLSNMY   KRWD    VR+ MKKK V+K  G SW+E  GV+H F  GD SHP 
Sbjct: 610 DDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPN 669

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
            + I  +L  L ++T+  G++P   +VL+DV ++EKE  L+ HSE+LALA+G+++   G 
Sbjct: 670 IKLIFAMLEWLYKKTRDAGYVPDCSVVLLDVEDDEKERLLWMHSERLALAFGLIQIPSGC 729

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI KNLRIC DCH+ IK++S++++R I++RD  RFH F  G+CSCGDYW
Sbjct: 730 SIRIIKNLRICVDCHAVIKLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 122/220 (55%), Gaps = 7/220 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNH 59
           MP  D++ W+ MI  + ++ +  EAL  F  M  SS V P+ FTFASV+  CA L  LN 
Sbjct: 266 MPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNL 325

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD-TVQRNDVSVWNAMISGVA 118
              +H+ +++  ++ N  +S AL+D+Y+KCG+I+ + ++F  + ++N+V+ WN +I G  
Sbjct: 326 GNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVA-WNTIIVGYV 384

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD-HMRSRYSIQPQ 177
             G    A  +F+ M   ++ P  +T+  +L A +    +E GR+     +++ Y+    
Sbjct: 385 QLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSV 444

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           + +  +++D+  + G I++A      M  + D V W AL+
Sbjct: 445 VAN--SLIDMYAKCGRIDDARLTFDKMDKQ-DEVSWNALI 481



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 120/241 (49%), Gaps = 6/241 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD+VSW  M+  +  N   +++L  F +M      P+ FT ++ +  C  L A      V
Sbjct: 168 KDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSV 227

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   ++   + +  +  AL+++Y+K G+I  A++ F+ + ++D+  W+ MIS  A    +
Sbjct: 228 HGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKS 287

Query: 124 ADASAIFTKMEMFN-VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
            +A  +F +M   + V+P++ TF  +L AC+   L+  G +    +  +  +   +    
Sbjct: 288 KEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVL-KVGLDSNVFVSN 346

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
           A++D+  + G IE +  L T  T E + V W  ++     + +L  GE A+   S ++G 
Sbjct: 347 ALMDVYAKCGEIENSVKLFTGST-EKNEVAWNTIIVG---YVQLGDGEKALNLFSNMLGL 402

Query: 243 D 243
           D
Sbjct: 403 D 403



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 101/219 (46%), Gaps = 4/219 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP  + VS+ ++  GF R+ +F  A R    +     E ++F F +++     +   +  
Sbjct: 64  MPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTC 123

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  + +   + +  +  ALID YS CG +  A++VFD +   D+  W  M++  A +
Sbjct: 124 LSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAEN 183

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               D+  +F +M +    P++ T    L +C+     + G+    H  +      +  +
Sbjct: 184 YCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSV--HGCALKVCYDRDLY 241

Query: 181 YG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
            G A+++L  ++G I EA      M  + D++ W  ++S
Sbjct: 242 VGIALLELYTKSGEIAEAQQFFEEMPKD-DLIPWSLMIS 279



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D VSWN++I G+  +    EAL  F  M  S  +P+K TF  V+  C+  G L+  
Sbjct: 469 MDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKG 528

Query: 61  -YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
                +++ +  IE        ++ +  + G+   A ++   +  +  V VW A++    
Sbjct: 529 RAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACV 588

Query: 119 IH 120
           IH
Sbjct: 589 IH 590


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  360 bits (925), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 173/413 (41%), Positives = 261/413 (63%), Gaps = 5/413 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLS--SKVEPDKFTFASVIYGCARLGALNHA 60
           ++DVVSWNSMI  + +N    EA+  + +ML+    ++ +    ++V+  CA  GA+   
Sbjct: 116 ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTG 175

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +HN ++   +E N  +  +++DMYSKCG+++MA   F  ++  ++  W+AMI+G  +H
Sbjct: 176 KHIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMH 235

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  IFT+M+   + P+ ITF+ +L ACSH GL++EGR +++ M+  + I+  +EH
Sbjct: 236 GRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEH 295

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDLLGRAG ++EAY LI  M ++PD  +W ALLSACR  K +EL E+++  +  L 
Sbjct: 296 YGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELD 355

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y     W   E +R ++K + + K  G S  EL G I+ F  GD+SH
Sbjct: 356 ASNSGYYVLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSH 415

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+   I   L  L++R +  G++P T  VL D+ EEEKE  L  HSEKLA+A+ ++ + P
Sbjct: 416 PQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVP 475

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            + I I KNLR+C DCH+ +K I+++  R II+RD  RFH F+ GLCSC DYW
Sbjct: 476 RSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 528



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 115/224 (51%), Gaps = 9/224 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEP--DKFTFASVIYGCARLGALN 58
           +PD + V   +M  G+VRN     +L  FR M++S      D+          AR+    
Sbjct: 10  IPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRG 69

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGK--IQMAKEVFDTVQRNDVSVWNAMISG 116
               +H LI +   E N  +   ++D Y+K G   +++A++VFDT++R DV  WN+MI+ 
Sbjct: 70  VTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTMER-DVVSWNSMIAL 128

Query: 117 VAIHGLAADASAIFTKMEMF--NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI 174
            A +G++A+A  +++KM      +  +++    +L AC+H G ++ G K+  +   R  +
Sbjct: 129 YAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTG-KHIHNQVVRMGL 187

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
           +  +    ++VD+  + G +E A      +  E +++ W A+++
Sbjct: 188 EENVYVGTSIVDMYSKCGRVEMASRAFRKIK-EKNILSWSAMIT 230


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  360 bits (924), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 175/411 (42%), Positives = 251/411 (61%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D +VVSW SMI    +N +  EAL  FREM    V+P+  T   ++  C  + AL H   
Sbjct: 306 DLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKA 365

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            H   +   I  +  + +ALIDMY+KCG++  ++  FD +   ++  WN++++G A+HG 
Sbjct: 366 AHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGK 425

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  IF  M+     PD ++F  +L+AC+  GL EEG  YFD M   + ++ ++EHY 
Sbjct: 426 TFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYS 485

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL--- 239
            MV LLGR+G +EEAY +I  M  EPD  VW ALLS+CR   R++LGE+A   +  L   
Sbjct: 486 CMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPR 545

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             G+Y+LLSN+Y     W   + VR++M+ +G++K+ G SW+E+   +H   AGD SHP+
Sbjct: 546 NPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLLAGDSSHPQ 605

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
              I + L  L    K  G++P T+ VL DV E++KE  L  HSEKLA+  G+L T PG 
Sbjct: 606 MPQIIEKLAKLTVEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTKPGF 665

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            +++ KNLRIC DCH+ IK IS   +R I VRD  RFH+F+GG+CSCGDYW
Sbjct: 666 PLQVIKNLRICRDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCGDYW 716



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 99/196 (50%), Gaps = 9/196 (4%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           ++VSWN MI GF R+  + +A+  F+ M    ++PD  + +SV+     L        +H
Sbjct: 174 NLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIH 233

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             +I++ +  +  + +ALIDMY KC        VF+ +   DV   NA+++G++ +GL  
Sbjct: 234 CYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVD 293

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR------SRYSIQPQL 178
           +A  +F + +  ++  + +++  ++ +CS  G   E  + F  M+      +  +I   L
Sbjct: 294 NALEVFKQFKGMDL--NVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLL 351

Query: 179 EHYGAMVDLL-GRAGH 193
              G +  LL G+A H
Sbjct: 352 PACGNIAALLHGKAAH 367



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 98/262 (37%), Gaps = 59/262 (22%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K  +S    I  F +   F   +R F  ML+  + PD     +VI  CA L AL     +
Sbjct: 37  KTGISLPETIQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQM 96

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV--------------------- 102
           H   +   + L+ ++ ++L+ MY +   ++ A+ VFD +                     
Sbjct: 97  HCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRV 156

Query: 103 --------QRNDVSV------WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGL 148
                   Q  D+ V      WN MISG    G   DA  +F  M +  + PD  +   +
Sbjct: 157 KETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSV 216

Query: 149 LTACS-----------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEA 197
           L A             HC ++++G            + P      A++D+ G+     E 
Sbjct: 217 LPAVGDLDMPLMGIQIHCYVIKQG------------LGPDKFVVSALIDMYGKCACASEM 264

Query: 198 YGLITSMTMEPDVVVWRALLSA 219
            G+   M  E DV    AL++ 
Sbjct: 265 SGVFNEMD-EVDVGACNALVTG 285



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 4/123 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++++VSWNS++ G+  + +  EA+  F  M     +PD  +F  V+  C + G L   
Sbjct: 405 MPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQ-GGLTEE 463

Query: 61  YWVH--NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGV 117
            W +  ++     +E      + ++ +  + G+++ A  +   +    D  VW A++S  
Sbjct: 464 GWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSC 523

Query: 118 AIH 120
            +H
Sbjct: 524 RVH 526


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  360 bits (924), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 180/418 (43%), Positives = 269/418 (64%), Gaps = 10/418 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KD+V+W  M+ GF +NA+  EA+ FF +M    VE D+ T   VI  CA+LGA  +A
Sbjct: 239 LPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYA 298

Query: 61  YWVHNLIIEKKIEL----NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
            W+ +  + +K E     + ++ +ALIDMYSKCG +  A  VF  ++  +V  +++MI G
Sbjct: 299 DWIRD--VAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILG 356

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
            A+HG   DA  +F +M    + P+ +TF+G+LTACSH G+VE+G + F+ M   Y I+P
Sbjct: 357 FAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKP 416

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNI 236
             +HY  MVDLLGRAG ++EA+ L+ +M +EP   VW ALL ACR  K  ++  +A  ++
Sbjct: 417 SADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAANHL 476

Query: 237 SRLMG---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLEL-AGVIHQFKA 292
             L     G+Y+LL+N+Y    RW+    VR++M+ +G+RK+   SW+E   G++H+F +
Sbjct: 477 FELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGMVHEFFS 536

Query: 293 GDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGI 352
           GD +HP +  I + L  L+ R +++G+ P    V  DV++E+K   L  HSEKLALA+G+
Sbjct: 537 GDMTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRILMTHSEKLALAFGL 596

Query: 353 LKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + T PG++IRI KNLRIC DCHS I   S++  R IIVRD +RFH F  G+CSCG++W
Sbjct: 597 ISTIPGSKIRIVKNLRICEDCHSVICGASQITGREIIVRDIMRFHHFHDGICSCGNFW 654



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 97/233 (41%), Gaps = 41/233 (17%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCAR--------------- 53
           +N++I G++   R  E+  F+  M    V P  FTF ++   C                 
Sbjct: 114 YNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQTI 173

Query: 54  -LGALNHAYWVHNLIIEKKIELNFILSA----------------ALIDMYSKCGKIQMAK 96
            +G       V N +I+  I+  F+                    LI  Y K G ++ A 
Sbjct: 174 LVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAG 233

Query: 97  EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
           E+FD +   D+  W  M+SG A +    +A   F KM+ F V  D IT +G+++AC+  G
Sbjct: 234 ELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLG 293

Query: 157 LVEEGRKYFDHMR-----SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
                 KY D +R     S +  +  +    A++D+  + G + +AY +   M
Sbjct: 294 ----AAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGM 342



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 81/212 (38%), Gaps = 47/212 (22%)

Query: 46  SVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKI--QMAKEVFDTVQ 103
           + + GC  L  +     VH  I+   ++ +  + A LI   +K           +F+ V 
Sbjct: 51  TTLDGCKNLTQIKQ---VHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVN 107

Query: 104 RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS---------- 153
             +  ++NA+I G  I     +++  ++ M    V+P S TF  L  AC           
Sbjct: 108 YPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQ 167

Query: 154 --------------------------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDL 187
                                      CG +E GRK FD M +R  I      +  ++  
Sbjct: 168 IHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVIS-----WTELISA 222

Query: 188 LGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             ++G++E A  L   + ++ D+V W  ++S 
Sbjct: 223 YVKSGNMESAGELFDGLPVK-DMVAWTVMVSG 253


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  360 bits (924), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 173/409 (42%), Positives = 256/409 (62%), Gaps = 4/409 (0%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           VV +N+MI G+ R  R +EAL  FREM    ++P++ T  SV+  CA LG+L+   W+H 
Sbjct: 195 VVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHK 254

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
              +        ++ ALIDM++KCG +  A  +F+ ++  D   W+AMI   A HG A  
Sbjct: 255 YAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEK 314

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           +  +F +M   NV PD ITFLGLL ACSH G VEEGRKYF  M S++ I P ++HYG+MV
Sbjct: 315 SMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMV 374

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMGG 242
           DLL  AG++E+AY  I  + + P  ++WR LL+AC +   L+L E     I  +    GG
Sbjct: 375 DLLSXAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGG 434

Query: 243 DYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQA 302
           DYV+LSN+Y   K+W+  +++R++MK +   K  G S +E+  V+H+F +GD        
Sbjct: 435 DYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTK 494

Query: 303 IDKILGSLIQRTKSEGFLPATELVL-MDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
           + + L  +++  K  G++P T +V+  +++++EKE  L +HSEKLA+ +G+L T PGT I
Sbjct: 495 LHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTI 554

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           R+ KNLR+C DCH+  K+IS +  R ++ RD  RFH FE G CSCGD+W
Sbjct: 555 RVVKNLRVCRDCHNAAKLISLIFGRKVVXRDVQRFHHFEDGKCSCGDFW 603



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 114/219 (52%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M + D+V +NSM  G+ R     E    F E+L   + PD +TF S++  CA   AL   
Sbjct: 89  MSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEG 148

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L ++  ++ N  +   LI+MY++C  +  A+ VFD +    V  +NAMI+G A  
Sbjct: 149 RQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYARR 208

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A ++F +M+   + P+ IT L +L++C+  G ++ G K+      ++S    ++ 
Sbjct: 209 NRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG-KWIHKYAKKHSFCKYVKV 267

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++D+  + G +++A  +   M  + D   W A++ A
Sbjct: 268 NTALIDMFAKCGSLDDAVSIFEKMRYK-DTQAWSAMIVA 305



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 33/169 (19%)

Query: 95  AKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
           A+ +F+ +   D+ ++N+M  G +      +  ++F ++    +LPD+ TF  LL AC+ 
Sbjct: 82  ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141

Query: 155 CGLVEEGRKY----------------------------FDHMRSRYS--IQPQLEHYGAM 184
              +EEGR+                              D  R  +   ++P +  Y AM
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAM 201

Query: 185 VDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGE 230
           +    R     EA  L   M    ++P+ +   ++LS+C     L+LG+
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGK 250



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/120 (20%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD  +W++MI  +  + + ++++  F  M S  V+PD+ TF  ++  C+  G +      
Sbjct: 294 KDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKY 353

Query: 64  HNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS-VWNAMISGVAIHG 121
            + ++ K  I  +     +++D+ S  G ++ A E  D +  +    +W  +++  + H 
Sbjct: 354 FSQMVSKFGIVPSIKHYGSMVDLLSXAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHN 413


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  360 bits (924), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 187/414 (45%), Positives = 253/414 (61%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +K + SWN+MI G+ +N   + A+  F+ M    V+P+  T +S +  CA LGAL+  
Sbjct: 374 MLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLG 433

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH +I ++K+ELN  +  ALIDMY+KCG I  A+ +FD +   +V  WNAMISG  +H
Sbjct: 434 KWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLH 493

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  A+A  ++  M    +LP S TFL ++ ACSH GLV+EG+K F  M + Y I P +EH
Sbjct: 494 GQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEH 553

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEP-DVVVWRALLSACRTFKRLELGEVAIVNISRL 239
              MVDLLGRAG + EA  LI+          VW ALL AC   K  +L ++A   +  L
Sbjct: 554 CTCMVDLLGRAGKLNEALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLASQKLFEL 613

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVLLSN+Y   K +  A  VR+  K + + K+ G + +E+    H F AGD  
Sbjct: 614 DSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVFMAGDHL 673

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+++AI   L  L  +    G+ P TE  L DV EEEKE  +  HSEKLA+A+G+L T 
Sbjct: 674 HPQSEAIYSYLERLTAKMIEAGYQPVTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTE 733

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PGTEIRI KNLR+C DCH+  K IS++ +R+I+VRD  RFH F  G+CSCGDYW
Sbjct: 734 PGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 119/218 (54%), Gaps = 2/218 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M + D+V++N++I G+  N   + ++  F+E+ +S   P+  T  +VI   +  G    A
Sbjct: 273 MDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLA 332

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++ +++ + ++S AL  +Y +   ++ A+ +FD +    +  WNAMISG A +
Sbjct: 333 RCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQN 392

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL   A A+F  M+  NV P+ IT    L+AC+H G +  G K+   + S+  ++  +  
Sbjct: 393 GLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLG-KWVHRIISKEKLELNVYV 451

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
             A++D+  + G I EA  +   M  + +VV W A++S
Sbjct: 452 MTALIDMYAKCGSIAEARSIFDRMDNK-NVVSWNAMIS 488



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 134/315 (42%), Gaps = 52/315 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLGALNH 59
           +P  D + WN+++ G   +    EAL  F  M+ + +V PD  T AS +   A    +  
Sbjct: 175 VPSPDTILWNTLLAGLPGS----EALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAM 230

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              VH   ++  +  +  +   L+ +YSKCG +  A+ +FD +   D+  +NA+ISG ++
Sbjct: 231 GRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSV 290

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLG-----------LLTACSHCGLV---------- 158
           +G+   +  +F ++      P+S T +            LL  C H  +V          
Sbjct: 291 NGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALV 350

Query: 159 --------------EEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEA---YGLI 201
                         E  R  FD M     ++  +E + AM+    + G  E A   + L+
Sbjct: 351 STALTTLYCRLNDMESARSIFDAM-----LEKTMESWNAMISGYAQNGLTEMAVALFQLM 405

Query: 202 TSMTMEPDVVVWRALLSACRTFKRLELGEVA--IVNISRLMGGDYVL--LSNMYCYLKRW 257
             + ++P+ +   + LSAC     L LG+    I++  +L    YV+  L +MY      
Sbjct: 406 QELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSI 465

Query: 258 DTAENVREIMKKKGV 272
             A ++ + M  K V
Sbjct: 466 AEARSIFDRMDNKNV 480



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 116/303 (38%), Gaps = 59/303 (19%)

Query: 16  FVRNARFDEALRFFREMLSSKVEPDKFTFA-----SVIYGCARLGALNHAYWVHNLIIEK 70
           F+RNA    +L   R  L     PD F+FA           +R      A  +H L +  
Sbjct: 86  FLRNALL-RSLPSLRPHLLFP-SPDSFSFAFAATSLSSSCSSRGNDAAAARTLHGLSVAA 143

Query: 71  KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIF 130
               +  +++AL  +Y K  +   A++VFDTV   D  +WN +++G+      ++A   F
Sbjct: 144 GYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLP----GSEALEAF 199

Query: 131 TKM-EMFNVLPDSITF-----------------------------------LGLLTACSH 154
            +M +   V PDS T                                     GL++  S 
Sbjct: 200 VRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSK 259

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME---PDVV 211
           CG ++  +  FD M +     P L  Y A++      G +E +  L   +T     P+  
Sbjct: 260 CGDMDSAQFLFDRMDN-----PDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSS 314

Query: 212 VWRALLSACRTFKRLELGEV--AIVNISRLMGGDYV--LLSNMYCYLKRWDTAENVREIM 267
              A++     F    L     A V  +RL     V   L+ +YC L   ++A ++ + M
Sbjct: 315 TLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAM 374

Query: 268 KKK 270
            +K
Sbjct: 375 LEK 377


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  360 bits (923), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 182/413 (44%), Positives = 247/413 (59%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D +SW +MI G+ ++ + +EAL  F +M       ++   A  +  CA + AL   
Sbjct: 365 MPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELG 424

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++   +  +I   AL+ MY KCG I+ A +VF+ +   D+  WN MI+G A H
Sbjct: 425 KQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARH 484

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A A+F  M+M  + PD +T +G+L+ACSH GLV++G +YF+ M   Y I    +H
Sbjct: 485 GFGKEALALFESMKM-TIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKH 543

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  M+DLLGRAG ++EA  L+ SM   PD   W ALL A R     ELGE A   +  + 
Sbjct: 544 YTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEME 603

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    RW     +R  M+ KGV+K  G SW+E+    H F  GD SH
Sbjct: 604 PDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSH 663

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PEA+ I   L  L    K +GF+ +T+LVL DV EEEKE  L +HSEKLA+A+GIL   P
Sbjct: 664 PEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPP 723

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH+ IK IS++ +R IIVRD  RFH F  G CSCGDYW
Sbjct: 724 GRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 24/226 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P +DV +W +M+ GFV+N   DEA R F EM     E ++ ++ ++I G          
Sbjct: 272 LPIRDVFAWTAMVSGFVQNGMLDEATRIFEEM----PEKNEVSWNAMIAG---------- 317

Query: 61  YWVHNLIIEKKIEL-------NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAM 113
            +V +  IEK  EL       N      ++  Y++CG I  AK +FD + + D   W AM
Sbjct: 318 -YVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAM 376

Query: 114 ISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
           ISG A  G + +A  +F KM+    + +       L++C+    +E G++    +  +  
Sbjct: 377 ISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRL-VKAG 435

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            Q       A++ + G+ G IEEA+ +   +T E D+V W  +++ 
Sbjct: 436 FQTGYIAGNALLAMYGKCGSIEEAFDVFEDIT-EKDIVSWNTMIAG 480



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 129/288 (44%), Gaps = 68/288 (23%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML--------------------------- 33
           MP+KDVVSWN+M+ GF +N   +EA + F +ML                           
Sbjct: 148 MPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLF 207

Query: 34  SSKVEPDKFTFASVIYGCARLGALNHAYWVHN-LIIEKKIELNFILSAALIDMYSKCGKI 92
            SK++ +  ++  ++ G  R   L+ A  + + + +  KI  N +++      Y++ G +
Sbjct: 208 DSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITG-----YAQNGLL 262

Query: 93  QMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM------------------- 133
             A+ +F+ +   DV  W AM+SG   +G+  +A+ IF +M                   
Sbjct: 263 SEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQ 322

Query: 134 ------EMFNVLP--DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
                 E+F+ +P  ++ ++  ++T  + CG +++ +  FD M  R  I      + AM+
Sbjct: 323 QIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCIS-----WAAMI 377

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRAL---LSACRTFKRLELGE 230
               ++G  EEA  L   M  +  ++   AL   LS+C     LELG+
Sbjct: 378 SGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGK 425



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 117/228 (51%), Gaps = 20/228 (8%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPD+D++SWN M+ G+V+N     A   F +M     E D  ++ +++ G A+ G +  A
Sbjct: 117 MPDRDLISWNVMLSGYVKNGNLSAARALFNQM----PEKDVVSWNAMLSGFAQNGFVEEA 172

Query: 61  YWVHN-LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             + + ++++ +I  N +LSA     Y + G+I+ A+ +FD+    ++  WN ++ G   
Sbjct: 173 RKIFDQMLVKNEISWNGLLSA-----YVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVR 227

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
                DA ++F +M     + D I++  ++T  +  GL+ E R+ F+ +  R      + 
Sbjct: 228 KKRLDDARSLFDRMP----VRDKISWNIMITGYAQNGLLSEARRLFEELPIR-----DVF 278

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
            + AMV    + G ++EA  +   M  E + V W A+++     +++E
Sbjct: 279 AWTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMIAGYVQSQQIE 325



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 14/165 (8%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGAL-NHAY 61
           D D+V WN  I  ++R  + + AL  F  M            ++V Y     G L N+ +
Sbjct: 57  DSDIVKWNRKISAYMRKGQCESALSVFNGMRRR---------STVTYNAMISGYLSNNKF 107

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
                + EK  + + I    ++  Y K G +  A+ +F+ +   DV  WNAM+SG A +G
Sbjct: 108 DCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNG 167

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD 166
              +A  IF +M    ++ + I++ GLL+A    G +E+ R+ FD
Sbjct: 168 FVEEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFD 208


>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
 gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
          Length = 605

 Score =  360 bits (923), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 174/415 (41%), Positives = 261/415 (62%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++++VSWN+M+ G+V+  RF +AL  F EM +  V+ + F  A+ +  C   GAL   
Sbjct: 191 MPERNLVSWNAMMSGYVKACRFLDALEVFDEMRARGVDGNVFVAATAVVACTGAGALARG 250

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ--RNDVSVWNAMISGVA 118
             VH  + +  I+++  L+ A++DMY KCG ++ A  VF+ +      ++ WN MI G A
Sbjct: 251 REVHRWVEQSGIQMDEKLATAVVDMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFA 310

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG   DA  +F +ME   V PD +T + +LTAC+H G++ EGR YF+++  RY I+P++
Sbjct: 311 VHGRGQDALKLFGRMEREGVAPDDVTLVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKM 370

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVN 235
           EHYG MVDL GRAG +EEA  +I  M MEPDV V  AL  A +    ++LGE     ++ 
Sbjct: 371 EHYGCMVDLYGRAGRLEEAKKVIQDMPMEPDVGVLGALFGASKIHGDVDLGEAIGWRVIE 430

Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           +     G YVLL+N+     RW+    VR +M ++ V K  G+S +E+ G + +F+ G  
Sbjct: 431 LDPQNSGRYVLLANLLATAGRWEDVARVRRLMDERNVSKEAGRSVIEVQGEVCEFQCGGL 490

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
            HP A+ +  +   ++++ ++EG++P T  VL  ++EEEKE  L +HSEKLA+A+G+L T
Sbjct: 491 CHPRAEEVYAMASDMMRKIRAEGYVPDTRDVLHAIAEEEKETPLLYHSEKLAIAFGLLHT 550

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            PG  +RI+KNLR+C DCH   K +SR+  R I+VRDR RFH F+ G CSC DYW
Sbjct: 551 RPGDTMRITKNLRVCRDCHEATKFVSRVFERQIVVRDRNRFHHFKDGQCSCKDYW 605



 Score = 39.3 bits (90), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 12/161 (7%)

Query: 88  KCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLG 147
           K G    A+ +FD +   ++  WNAM+SG        DA  +F +M    V  +      
Sbjct: 177 KLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMRARGVDGNVFVAAT 236

Query: 148 LLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME 207
            + AC+  G +  GR+    +  +  IQ   +   A+VD+  + G +EEA+ +  ++ + 
Sbjct: 237 AVVACTGAGALARGREVHRWV-EQSGIQMDEKLATAVVDMYCKCGCVEEAWRVFEALPLA 295

Query: 208 PD-VVVWRALLS----------ACRTFKRLELGEVAIVNIS 237
              +  W  ++           A + F R+E   VA  +++
Sbjct: 296 AKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVAPDDVT 336


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  360 bits (923), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 178/413 (43%), Positives = 250/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP K++V+WN+MI G++ N + +  L+ F+ M+ S   P+  + +SV+ GC+ L AL   
Sbjct: 187 MPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLG 246

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH LI +  +  N     +L+ MY KCG ++ A ++F  + + DV  WNAMISG A H
Sbjct: 247 KQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQH 306

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F KM    + PD ITF+ +L+AC+H G V+ G +YF+ M   Y ++ + +H
Sbjct: 307 GAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDH 366

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  +VDLLGR G + EA  LI  M  +P   ++  LL ACR  K LEL E A   ++N+ 
Sbjct: 367 YTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLD 426

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 YV L+N+Y  + RWD    VR  MK   V K+ G SW+E+  V+H+F++GDR H
Sbjct: 427 PESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGDRIH 486

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE   I + L  L ++ +  G++P  E  L DV EE+K+  L  HSEKLA+AYG+++   
Sbjct: 487 PELAFIHEKLNELERKMRLAGYVPDLEYALHDVGEEQKKQILLRHSEKLAIAYGLIRMPL 546

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IR+ KNLR+C DCHS  K IS +  RVIIVRD  RFH F  G CSCGDYW
Sbjct: 547 GTPIRVFKNLRVCGDCHSATKYISAIEGRVIIVRDTTRFHHFRQGECSCGDYW 599



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 107/219 (48%), Gaps = 10/219 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD  SWN+MI GF +N   D+A    RE+       +  ++ ++I G    G L+ A
Sbjct: 94  MPVKDTASWNTMISGFSQNGMMDQA----RELFLVMPVRNSVSWNAMISGYVESGDLDLA 149

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +  +   + +    +   A+I  + K GKI++A++ F+ +   ++  WNAMI+G   +
Sbjct: 150 KQLFEVAPVRSV----VAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIEN 205

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
             A +   +F +M      P+  +   +L  CS+   ++ G++    +  +  +   +  
Sbjct: 206 CQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQ-VHQLICKSPVSWNITA 264

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +++ +  + G +E+A+ L   M  + DVV W A++S 
Sbjct: 265 GTSLLSMYCKCGDLEDAWKLFLVMP-QKDVVTWNAMISG 302



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 25/219 (11%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA-RLGALNHAYWV 63
           +V+S N +I   +R+   + ALR F  M          T+ S++ G + R G +  A  +
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTT----VTWNSMLAGYSNRRGKIKVARQL 59

Query: 64  HNLIIEKKI-ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            + I E  I   N +L+      Y     ++ A+  FD +   D + WN MISG + +G+
Sbjct: 60  FDRIPEPDIFSYNIMLAC-----YLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGM 114

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP--QLEH 180
              A  +F  M + N    S+++  +++     G VE G    D  +  + + P   +  
Sbjct: 115 MDQARELFLVMPVRN----SVSWNAMIS-----GYVESGD--LDLAKQLFEVAPVRSVVA 163

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           + AM+    + G IE A      M M+ ++V W A+++ 
Sbjct: 164 WTAMITGFMKFGKIELAEKYFEEMPMK-NLVTWNAMIAG 201


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  360 bits (923), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 182/410 (44%), Positives = 250/410 (60%), Gaps = 3/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K+++SWN+M+  +  N    +A+  F  M   +VEPD  T A+V+  C  L A +    +
Sbjct: 256 KELISWNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRI 315

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H +I  K +  N +L  AL+DMY+ CG ++ A+E+FD +   DV  W ++IS    HG  
Sbjct: 316 HEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVISWTSIISAYGKHGHG 375

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F KM    + PDSI F+ +L ACSH GL+ +G+ YFD M SRY I P+ EHY  
Sbjct: 376 REAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTC 435

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG-- 241
           MVDLLGRAG I EAY  IT+M +EP+  VW ALL ACR    +++G VA  N+  L+   
Sbjct: 436 MVDLLGRAGCINEAYDFITTMLIEPNERVWGALLQACRIHSNMDIGLVAADNLFSLVPEQ 495

Query: 242 -GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G YVLLSNMY    RW    +VR +M  KG++K  G S +EL   +H F  GDR HP++
Sbjct: 496 TGYYVLLSNMYARAGRWADVTSVRSVMVNKGIKKFPGTSIVELGDQVHTFHIGDRCHPQS 555

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + I   L  L+ + +  G+ P  E  L DV EE+KE +L  HSEKLA+A+ +L TSPGT 
Sbjct: 556 EMIYHKLDELLGKIRGMGYNPEVEATLHDVEEEDKEDHLSVHSEKLAIAFLLLNTSPGTI 615

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IR++ NLR C DCH   K+IS +  R I+++D  R H    G+CSCGDYW
Sbjct: 616 IRVTMNLRTCSDCHLAAKLISIITCREIVLKDTNRIHHIVQGVCSCGDYW 665



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 123/279 (44%), Gaps = 17/279 (6%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLS--SKVEPDKFTFASVIYGCARLGALNHAYWV 63
            V +N +I     ++   +AL  F  M        PD +T+   +  C+    L     +
Sbjct: 86  TVCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSASKDLLLGLQI 145

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H+ + + +++ N  ++ + I MYS+CG+ + A  VFD +   DV  WNAMI+G A  GL 
Sbjct: 146 HSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGLF 205

Query: 124 ADASAIFTKMEMFN-VLPDSITFLGLLTACSHCGL--VEEGRKYFDHMRSRYSIQPQLEH 180
             A  +F +  +    +PD+ T  G+L A  +     +   R+ FD+M+ +     +L  
Sbjct: 206 DRAIEVFKQFVVLQGSMPDAGTMAGILPAMGNAKPDDIRFVRRVFDNMQFK-----ELIS 260

Query: 181 YGAMVDLLGRAG-HIE--EAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
           + AM+ +      H++  E + L+    +EPD +    +L  C       +G+     I 
Sbjct: 261 WNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEIIK 320

Query: 238 RLMGGDYVLLSN----MYCYLKRWDTAENVREIMKKKGV 272
           R      +LL N    MY        A  + ++M  + V
Sbjct: 321 RKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDV 359


>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
          Length = 619

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 180/413 (43%), Positives = 260/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M     V+W++MIGG+VR+    +A+  FREM +S V PD+ T   V+   A LGAL  A
Sbjct: 207 MAKSSAVTWSAMIGGYVRSGLSSDAVGLFREMQASGVRPDEVTMIGVLAAAADLGALELA 266

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WV   + ++ I  +  L  ALID  +KCG +  A  VF  ++   +  W ++I  +A+ 
Sbjct: 267 RWVGRFVEKEGIGKSVTLCNALIDALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAME 326

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A A+F +M+   V PD + F+G+LTACSH G+V+EG  YF+ MR  Y I P++EH
Sbjct: 327 GRGKEAVAVFEEMKTAGVRPDDVAFIGVLTACSHAGMVDEGYGYFESMRMAYGIDPKIEH 386

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV---AIVNIS 237
           YG MVD+ GRAG +E A   +  M M+P+ ++WR L++ACR   RLELGE     ++N  
Sbjct: 387 YGCMVDMFGRAGMVERAMEFVHKMPMKPNPIIWRTLVAACRAHGRLELGETITRNLLNEY 446

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                +YV+LSN+Y   +RW     +R  M K+G++K  G S +EL G +H+F AGD SH
Sbjct: 447 PAHEANYVMLSNVYALTRRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESH 506

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I  ++  + +  +  G + AT  VL+D+ EE+KE  L  HSEKLA+A+ +L+T P
Sbjct: 507 PQWKEIYMMVEEMARELRRAGHISATSEVLLDLDEEDKEVALQWHSEKLAIAFVLLRTPP 566

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT++R+ KNLR+C DCH+ IK IS +  R IIVRDR RFHRF+ G CSC D+W
Sbjct: 567 GTQVRVVKNLRVCSDCHAAIKCISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 619


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 181/411 (44%), Positives = 255/411 (62%), Gaps = 4/411 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDVVSW SMI  +V N   +EAL  F  M  + VEPD  T  S++   A L ALN    +
Sbjct: 377 KDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEI 436

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  I  K   L      +L+DMY+ CG ++ A +VF   +   + +W  MI+   +HG  
Sbjct: 437 HGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRG 496

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  +F+ ME   ++PD ITFL LL ACSH GL+ EG++  + M+ +Y ++P  EHY  
Sbjct: 497 KAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYAC 556

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
           +VDLLGRA H+EEAY  + SM +EP   VW A L ACR     +LGE+A   ++++    
Sbjct: 557 LVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPDS 616

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G YVL+SN++    RW   E VR  MK  G++K+ G SW+E+   +H F   D+SHPE+
Sbjct: 617 PGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKVHTFLVRDKSHPES 676

Query: 301 QAIDKILGSLIQRTKSE-GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
             I + L  + ++ + E G++P T+LVL +V +EEK   LY HSE+LA+AYG++ TS GT
Sbjct: 677 YKIYQKLAQITEKLEKEGGYVPQTKLVLHNVGKEEKVQMLYGHSERLAIAYGLMSTSEGT 736

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI+KNLR+C DCH++ K++S+   R +IVRD  RFH FE G+CSCGD+W
Sbjct: 737 PIRITKNLRVCVDCHTFCKLVSKFFERELIVRDASRFHHFEDGVCSCGDFW 787



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 117/219 (53%), Gaps = 3/219 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +KD++SW ++I  + +N    EAL+  R++ +  ++ D     S +  C+ L  L+HA
Sbjct: 274 MINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHA 333

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   +++ +  + ++   +ID+Y+ CG I  A  +F++++  DV  W +MIS    +
Sbjct: 334 KEVHGYTLKRGLS-DLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHN 392

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GLA +A  +F  M+  +V PDSIT + +L+A +    + +G++    +  R     +   
Sbjct: 393 GLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFI-FRKGFMLEGST 451

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             ++VD+    G +E AY +    T    +V+W  +++A
Sbjct: 452 VNSLVDMYACCGSLENAYKVFIC-TRSKSLVLWTTMINA 489



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 111/218 (50%), Gaps = 3/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + +KD ++WNSMI GF +N  ++EAL+FF  +  + ++PD+ +  S++    RLG L + 
Sbjct: 173 LDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNG 232

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++  ++ N  +   LIDMYSKC  +  A  VFD +   D+  W  +I+  A +
Sbjct: 233 KEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQN 292

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A  +  K++   +  D++     L ACS    +   ++   +   R      +++
Sbjct: 293 NCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSDLMMQN 352

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
              ++D+    G+I  A  +  S+  + DVV W +++S
Sbjct: 353 --MIIDVYADCGNINYATRMFESIKCK-DVVSWTSMIS 387



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 104/216 (48%), Gaps = 2/216 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
            DVVSWNS+I  +  N +  EAL  FREM  + V  + +T  + +  C           +
Sbjct: 75  NDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEI 134

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  I++    L+  ++ AL+ M+ + GK+  A  +FD +   D   WN+MI+G   +GL 
Sbjct: 135 HAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLY 194

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A   F  ++  N+ PD ++ + +L A    G +  G++   +    + +   L     
Sbjct: 195 NEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNW-LDSNLRIGNT 253

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++D+  +   +  A GL+    +  D++ W  +++A
Sbjct: 254 LIDMYSKCCCVAYA-GLVFDKMINKDLISWTTVIAA 288



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 1/117 (0%)

Query: 37  VEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAK 96
           V  D FTF  V+  C  +  ++    +H LII+   +    ++ +L+ MY+KC  I  A+
Sbjct: 6   VPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGAR 65

Query: 97  EVFDTV-QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC 152
           ++FD + +RNDV  WN++IS  +++G   +A  +F +M+   V  ++ T +  L AC
Sbjct: 66  KLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQAC 122


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 174/411 (42%), Positives = 263/411 (63%), Gaps = 5/411 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++++V W++M+ G+ R    +EAL  FREM    +EPD+ +   V+  CA +GAL+   W
Sbjct: 155 ERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKW 214

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  I ++ I ++  L+ ALI+MY+KCG I+ A+E+FD ++  D   W++MI G+AIHGL
Sbjct: 215 VHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGL 274

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A DA  +F++ME     P+ +TF+G+L+AC+H GLV +G++Y+  M     I+P +EHYG
Sbjct: 275 AEDALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDGKRYWSSML-ELGIEPSMEHYG 333

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC---RTFKRLELGEVAIVNISRL 239
            MVDLL R G I+EAY     +   PD V+WR LL A    R  ++ E+    ++ +   
Sbjct: 334 CMVDLLCRGGLIDEAYDF-ALIIPTPDPVIWRTLLVAYTKNRMLQKAEMVAGKLLELEPW 392

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
              +Y++L+N+Y  + + +   +VR++MK+ G++   G + +E+ G +H F  GD SHPE
Sbjct: 393 KAENYIILANLYASVSQLEKVSHVRKMMKENGIKALPGCTSIEVDGFVHNFVTGDWSHPE 452

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           A+ I K L  +  +    G+ P   +VL  V++EEKE  LY HSE+LA+AYG++KT    
Sbjct: 453 AEEIKKTLRDVALKILISGYKPFVSVVLHLVNDEEKENVLYEHSERLAIAYGLMKTKAPA 512

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI KNLR+C DCH   K+IS++  R IIVRDR+RFH+F  G CSC DYW
Sbjct: 513 TIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVNGTCSCKDYW 563



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 125/239 (52%), Gaps = 14/239 (5%)

Query: 1   MPDKDVVSWNSMI-GGFVRNARFDEALRFFREMLSSKV-EPDKFTFASVIYGCARLGALN 58
           +P+  + ++NS+I G         E +  F++M+      P+ FT A V+  C+ + AL 
Sbjct: 50  IPNPGIFAYNSVIRGCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAFVLKACSIIMALE 109

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H  I+      +  + ++L++ YSKC +I +A++VFD +   ++  W+AM+SG A
Sbjct: 110 EGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYA 169

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
             G+  +A  +F +M++  + PD ++ +G+L+AC+  G ++ G+    +++ R  I   L
Sbjct: 170 RLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRM-IHVDL 228

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL----------SACRTFKRLE 227
           E   A++++  + G IE+A  +   M ++ D   W +++           A   F R+E
Sbjct: 229 ELNTALINMYAKCGCIEKAREIFDEMRVK-DSKAWSSMIVGLAIHGLAEDALNVFSRME 286


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 178/413 (43%), Positives = 250/413 (60%), Gaps = 5/413 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M   D + WNS+IGGF +N+R D AL  F+ M  +    ++ T  SV+  C  L  L   
Sbjct: 220 MVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 279

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H  I+  K + + IL+ AL+DMY KCG ++ A  VF+ ++  DV  W+ MISG+A +
Sbjct: 280 MQAHVHIV--KYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQN 337

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G + +A  +F +M+     P+ IT +G+L ACSH GL+E+G  YF  M+  Y I P  EH
Sbjct: 338 GYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREH 397

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG M+DLLG+AG +++A  L+  M  EPD V WR LL ACR  + + L E A   ++ + 
Sbjct: 398 YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALD 457

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y LLSN+Y   ++WD+ E +R  M+ +G++K  G SW+E+   IH F  GD SH
Sbjct: 458 PEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSH 517

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+   + K L  LI R    G++P T  VL D+  E+ E +L HHSEKLALA+G++    
Sbjct: 518 PQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPI 577

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IRI KNLRIC DCH + K+ S+L  R I++RD IR+H F+ G CSCGDYW
Sbjct: 578 EKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 115/219 (52%), Gaps = 7/219 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++V+SW +MI  + +     +AL     ML   V P+ +T++SV+  C     ++  
Sbjct: 122 MPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSC---NGMSDV 178

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  II++ +E +  + +ALID+++K G+ + A  VFD +   D  VWN++I G A +
Sbjct: 179 RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQN 238

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
             +  A  +F +M+    + +  T   +L AC+   L+E G +   H+  +Y     L +
Sbjct: 239 SRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI-VKYDQDLILNN 297

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A+VD+  + G +E+A  +   M  E DV+ W  ++S 
Sbjct: 298 --ALVDMYCKCGSLEDALRVFNQMK-ERDVITWSTMISG 333



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 119/295 (40%), Gaps = 62/295 (21%)

Query: 25  ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV-HNLIIEKKIELNFILSAALI 83
           A++    + S  +  D  T++ +I  C    A++    +  +L       + F+++  LI
Sbjct: 45  AMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNV-LI 103

Query: 84  DMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSI 143
           +MY K   +  A ++FD + + +V  W  MIS  +   +   A  +   M   NV P+  
Sbjct: 104 NMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVY 163

Query: 144 TFLGLLTACS--------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIE 195
           T+  +L +C+        HCG+++EG +    +RS            A++D+  + G  E
Sbjct: 164 TYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRS------------ALIDVFAKLGEPE 211

Query: 196 EAYGLITSMTMEPDVVVWRAL-----------------------------------LSAC 220
           +A  +   M +  D +VW ++                                   L AC
Sbjct: 212 DALSVFDEM-VTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRAC 270

Query: 221 RTFKRLELGEVAIVNISRLMGGDYVL---LSNMYCYLKRWDTAENVREIMKKKGV 272
                LELG  A V+I +    D +L   L +MYC     + A  V   MK++ V
Sbjct: 271 TGLALLELGMQAHVHIVKY-DQDLILNNALVDMYCKCGSLEDALRVFNQMKERDV 324


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 180/425 (42%), Positives = 265/425 (62%), Gaps = 15/425 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM--LSSKV---------EPDKFTFASVIY 49
           M D+D+V+WN+MI G+V +   ++AL    +M  L  KV         +P+  T  +++ 
Sbjct: 379 MEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILP 438

Query: 50  GCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV 109
            CA L AL     +H   I+  +  +  + +AL+DMY+KCG +QM+++VFD + + +V  
Sbjct: 439 SCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVIT 498

Query: 110 WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169
           WN +I    +HG   +A  +   M +  V P+ +TF+ +  ACSH G+V+EG + F  M+
Sbjct: 499 WNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMK 558

Query: 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV-VWRALLSACRTFKRLEL 228
             Y ++P  +HY  +VDLLGRAG I+EAY L+  M  + +    W +LL A R    LE+
Sbjct: 559 PDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEI 618

Query: 229 GEVAIVNISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAG 285
           GE+A  N+ +L   +   YVLL+N+Y     WD A  VR  MK++GVRK  G SW+E   
Sbjct: 619 GEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGD 678

Query: 286 VIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEK 345
            +H+F AGD SHP+++ +   L +L +R + EG++P T  VL +V E+EKE  L  HSEK
Sbjct: 679 EVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEK 738

Query: 346 LALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCS 405
           LA+A+GIL TSPGT IR++KNLR+C+DCH   K IS+++ R II+RD  RFHRF+ G CS
Sbjct: 739 LAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCS 798

Query: 406 CGDYW 410
           CGDYW
Sbjct: 799 CGDYW 803



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALN----- 58
           +D+V+WN+++    +N +  EAL + REM+   VEPD+FT +SV+  C+ L  L      
Sbjct: 178 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 237

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
           HAY + N      ++ N  + +AL+DMY  C ++   + VFD +    + +WNAMI+G +
Sbjct: 238 HAYALKN----GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYS 293

Query: 119 IHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
            +    +A  +F  M E   +L +S T  G++ AC   G           +  R   + +
Sbjct: 294 QNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDR 353

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                 ++D+  R G I+ A  +   M  + D+V W  +++ 
Sbjct: 354 FVQ-NTLMDMYSRLGKIDIAMRIFGKME-DRDLVTWNTMITG 393



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 114/231 (49%), Gaps = 14/231 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           M D+ +  WN+MI G+ +N    EAL  F  M  S+ +  +  T A V+  C R GA + 
Sbjct: 277 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 336

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  ++++ ++ +  +   L+DMYS+ GKI +A  +F  ++  D+  WN MI+G   
Sbjct: 337 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVF 396

Query: 120 HGLAADASAIFTKMEMF-----------NVLPDSITFLGLLTACSHCGLVEEGRKYFDHM 168
                DA  +  KM+             ++ P+SIT + +L +C+    + +G++   + 
Sbjct: 397 SEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYA 456

Query: 169 RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             + ++   +    A+VD+  + G ++ +  +   +  + +V+ W  ++ A
Sbjct: 457 -IKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMA 505



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 102/227 (44%), Gaps = 15/227 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARL------ 54
           + +++ VSWNS+I       +++ AL  FR ML   VEP  FT  SV+  C+ L      
Sbjct: 72  ISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGL 131

Query: 55  --GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA 112
             G   HAY +      +K ELN  +   L+ MY K GK+  +K +  +    D+  WN 
Sbjct: 132 MMGKQVHAYGL------RKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNT 185

Query: 113 MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY 172
           ++S +  +    +A     +M +  V PD  T   +L ACSH  ++  G++   +     
Sbjct: 186 VLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG 245

Query: 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           S+        A+VD+      +     +   M  +  + +W A+++ 
Sbjct: 246 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKIGLWNAMIAG 291



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 96/201 (47%), Gaps = 8/201 (3%)

Query: 32  MLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSA-ALIDMYSKCG 90
           M+   ++PD + F +++   A L  +     +H  + +    ++ +  A  L+++Y KCG
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 91  KIQMAKEVFDTV-QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
                 +VFD + +RN VS WN++IS +        A   F  M   NV P S T + ++
Sbjct: 61  DFGAVYKVFDRISERNQVS-WNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVV 119

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY--GAMVDLLGRAGHIEEAYGLITSMTME 207
           TACS+  +  EG      + +    + +L  +    +V + G+ G +  +  L+ S    
Sbjct: 120 TACSNLPM-PEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGR 178

Query: 208 PDVVVWRALLSA-CRTFKRLE 227
            D+V W  +LS+ C+  + LE
Sbjct: 179 -DLVTWNTVLSSLCQNEQLLE 198


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 180/416 (43%), Positives = 256/416 (61%), Gaps = 6/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP K+VVSW S+I G V   +  EAL    EM ++  E D    AS++  CA LGAL+  
Sbjct: 180 MPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQG 239

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN--DVSVWNAMISGVA 118
            W+H  ++   ++++ ++  AL++MY KCG ++ A  VF  ++ N  DV +W AMI G A
Sbjct: 240 RWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFA 299

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           IHG   +A   F +M    + P+SITF  +L ACS+ GLVEEG++ F  M+  Y++ P +
Sbjct: 300 IHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSI 359

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE---VAIVN 235
           EHYG MVDLLGR+G ++EA  LI  M M+P  V+W ALL AC   +   LG      +V 
Sbjct: 360 EHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIHRDFLLGSQVGAHLVE 419

Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           +     G Y+ L+ +     +W  A  VR  MK  GV  S GKS + L G++H+F AG +
Sbjct: 420 VDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGIVHEFLAGHQ 479

Query: 296 SHPEAQAIDKILGSLIQRTKS-EGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
            HP+ + I   L  + +R +  EG+ PAT+ +L+D+  EEKE  +  HSEKLA+A+G++ 
Sbjct: 480 DHPQMEQIQLKLKQIAERLRQDEGYEPATKDLLLDLENEEKETAMAQHSEKLAIAFGLIN 539

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T PGT IR+ KNLRIC DCH+  K++S++  R II+RDR+RFH F  G CSC DYW
Sbjct: 540 TKPGTTIRVIKNLRICRDCHTVAKLVSQIYSREIIMRDRVRFHHFRDGSCSCKDYW 595



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 109/244 (44%), Gaps = 35/244 (14%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           WN++I  +  +   + A   +++MLSS V  + +TF  ++  C  L A+  A  VH L+I
Sbjct: 56  WNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVI 115

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
           +     +     AL+ +Y+ CG+I  A+++FD +   D   WN MI G    G    A  
Sbjct: 116 KLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYG 175

Query: 129 IFTKMEMFNVLP-------------------------------DSITFLGLLTACSHCGL 157
           +F  M + NV+                                D +    LLTAC++ G 
Sbjct: 176 VFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGA 235

Query: 158 VEEGR-KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT-MEPDVVVWRA 215
           +++GR  +F  + +   +   +    A+V++  + G +EEA  +   +   + DV +W A
Sbjct: 236 LDQGRWLHFYVLNNGVDVDRVIG--CALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTA 293

Query: 216 LLSA 219
           ++  
Sbjct: 294 MIDG 297


>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Vitis vinifera]
          Length = 607

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 185/421 (43%), Positives = 270/421 (64%), Gaps = 13/421 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++ +VSWN +I  FVR   FD AL  F EM     EPD +T  S+   CA +G+L+  
Sbjct: 189 MSERSLVSWNVVIDAFVRFGEFDAALNLFGEM-QKFFEPDGYTIQSIANACAGMGSLSLG 247

Query: 61  YWVHNLIIEK----KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
            W H  +++K    ++  + +L+ +L+DMY KCG +++A ++F  + + DV+ WN+MI G
Sbjct: 248 MWAHVFLLKKFDADRVN-DVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILG 306

Query: 117 VAIHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
            + HG  A A   F  M     ++P++ITF+G+L+AC+H GLV EGR+YFD M + Y I+
Sbjct: 307 FSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIK 366

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA-CRTFKRLELGEVAIV 234
           P+LEHYG +VDLL RAG I+EA  ++++M M PD+V+WR+LL A C+    +EL E    
Sbjct: 367 PELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAGVELSEEMAR 426

Query: 235 NISRLMG----GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQF 290
            +    G    G YVLLS +Y    RW+    VR++M  KGV K  G S +E+ GV H+F
Sbjct: 427 RVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDGVAHEF 486

Query: 291 KAGDRSHPEAQAIDKILGSLIQRTKSEGFLP-ATELVLMDVSEEEKEGNLYHHSEKLALA 349
            AGD SHP+ + I   L  + +R +  G+ P +++  ++D + + K+ +L  HSE+LA+A
Sbjct: 487 FAGDTSHPQTEEIYSALDVIEERVERVGYSPDSSQAPMVDETIDGKQYSLRLHSERLAIA 546

Query: 350 YGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDY 409
           +G+LKT PG  IRI KNLR+C++CH   K+ISR+  R IIVRDRIRFH F+ G CSC DY
Sbjct: 547 FGLLKTKPGMPIRIFKNLRVCNNCHQVTKLISRVFNREIIVRDRIRFHHFKDGACSCMDY 606

Query: 410 W 410
           W
Sbjct: 607 W 607



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 101/233 (43%), Gaps = 21/233 (9%)

Query: 9   WNSMIGGFVRNA-RFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           WN++I    R+  R   A+  +  ML    V  DK TF  V+  CA L AL+    +H  
Sbjct: 94  WNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQ 153

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           I++   + +  ++ +L+  Y+ C ++  AK VFD +    +  WN +I      G    A
Sbjct: 154 ILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAA 213

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR-------KYFDHMRSRYSIQPQLE 179
             +F +M+ F   PD  T   +  AC+  G +  G        K FD  R    +     
Sbjct: 214 LNLFGEMQKF-FEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKFDADRVNDVLLNT-- 270

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA 232
              ++VD+  + G +E A  L   M  + DV  W +++    T      GEVA
Sbjct: 271 ---SLVDMYCKCGSLELALQLFHRMP-KRDVTSWNSMILGFSTH-----GEVA 314


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 180/425 (42%), Positives = 265/425 (62%), Gaps = 15/425 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM--LSSKV---------EPDKFTFASVIY 49
           M D+D+V+WN+MI G+V +   ++AL    +M  L  KV         +P+  T  +++ 
Sbjct: 466 MEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILP 525

Query: 50  GCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV 109
            CA L AL     +H   I+  +  +  + +AL+DMY+KCG +QM+++VFD + + +V  
Sbjct: 526 SCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVIT 585

Query: 110 WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169
           WN +I    +HG   +A  +   M +  V P+ +TF+ +  ACSH G+V+EG + F  M+
Sbjct: 586 WNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMK 645

Query: 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV-VWRALLSACRTFKRLEL 228
             Y ++P  +HY  +VDLLGRAG I+EAY L+  M  + +    W +LL A R    LE+
Sbjct: 646 PDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEI 705

Query: 229 GEVAIVNISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAG 285
           GE+A  N+ +L   +   YVLL+N+Y     WD A  VR  MK++GVRK  G SW+E   
Sbjct: 706 GEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGD 765

Query: 286 VIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEK 345
            +H+F AGD SHP+++ +   L +L +R + EG++P T  VL +V E+EKE  L  HSEK
Sbjct: 766 EVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEK 825

Query: 346 LALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCS 405
           LA+A+GIL TSPGT IR++KNLR+C+DCH   K IS+++ R II+RD  RFHRF+ G CS
Sbjct: 826 LAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCS 885

Query: 406 CGDYW 410
           CGDYW
Sbjct: 886 CGDYW 890



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALN----- 58
           +D+V+WN+++    +N +  EAL + REM+   VEPD+FT +SV+  C+ L  L      
Sbjct: 265 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
           HAY + N      ++ N  + +AL+DMY  C ++   + VFD +    + +WNAMI+G +
Sbjct: 325 HAYALKN----GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYS 380

Query: 119 IHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
            +    +A  +F  M E   +L +S T  G++ AC   G           +  R   + +
Sbjct: 381 QNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDR 440

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                 ++D+  R G I+ A  +   M  + D+V W  +++ 
Sbjct: 441 FVQ-NTLMDMYSRLGKIDIAMRIFGKME-DRDLVTWNTMITG 480



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 114/231 (49%), Gaps = 14/231 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           M D+ +  WN+MI G+ +N    EAL  F  M  S+ +  +  T A V+  C R GA + 
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  ++++ ++ +  +   L+DMYS+ GKI +A  +F  ++  D+  WN MI+G   
Sbjct: 424 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVF 483

Query: 120 HGLAADASAIFTKMEMF-----------NVLPDSITFLGLLTACSHCGLVEEGRKYFDHM 168
                DA  +  KM+             ++ P+SIT + +L +C+    + +G++   + 
Sbjct: 484 SEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYA 543

Query: 169 RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             + ++   +    A+VD+  + G ++ +  +   +  + +V+ W  ++ A
Sbjct: 544 -IKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMA 592



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 101/225 (44%), Gaps = 15/225 (6%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARL-------- 54
           +++ VSWNS+I       +++ AL  FR ML   VEP  FT  SV+  C+ L        
Sbjct: 161 ERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMM 220

Query: 55  GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMI 114
           G   HAY +      +K ELN  +   L+ MY K GK+  +K +  +    D+  WN ++
Sbjct: 221 GKQVHAYGL------RKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVL 274

Query: 115 SGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI 174
           S +  +    +A     +M +  V PD  T   +L ACSH  ++  G++   +     S+
Sbjct: 275 SSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSL 334

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                   A+VD+      +     +   M  +  + +W A+++ 
Sbjct: 335 DENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKIGLWNAMIAG 378



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 107/224 (47%), Gaps = 8/224 (3%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           W  ++   VR+    EA+  + +M+   ++PD + F +++   A L  +     +H  + 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 69  EKKIELNFILSA-ALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAIHGLAADA 126
           +    ++ +  A  L+++Y KCG      +VFD + +RN VS WN++IS +        A
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVS-WNSLISSLCSFEKWEMA 183

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY--GAM 184
              F  M   NV P S T + ++TACS+  +  EG      + +    + +L  +    +
Sbjct: 184 LEAFRCMLDENVEPSSFTLVSVVTACSNLPM-PEGLMMGKQVHAYGLRKGELNSFIINTL 242

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA-CRTFKRLE 227
           V + G+ G +  +  L+ S     D+V W  +LS+ C+  + LE
Sbjct: 243 VAMYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSSLCQNEQLLE 285


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 180/425 (42%), Positives = 265/425 (62%), Gaps = 15/425 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM--LSSKV---------EPDKFTFASVIY 49
           M D+D+V+WN+MI G+V +   ++AL    +M  L  KV         +P+  T  +++ 
Sbjct: 466 MEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILP 525

Query: 50  GCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV 109
            CA L AL     +H   I+  +  +  + +AL+DMY+KCG +QM+++VFD + + +V  
Sbjct: 526 SCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVIT 585

Query: 110 WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169
           WN +I    +HG   +A  +   M +  V P+ +TF+ +  ACSH G+V+EG + F  M+
Sbjct: 586 WNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMK 645

Query: 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV-VWRALLSACRTFKRLEL 228
             Y ++P  +HY  +VDLLGRAG I+EAY L+  M  + +    W +LL A R    LE+
Sbjct: 646 PDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEI 705

Query: 229 GEVAIVNISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAG 285
           GE+A  N+ +L   +   YVLL+N+Y     WD A  VR  MK++GVRK  G SW+E   
Sbjct: 706 GEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGD 765

Query: 286 VIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEK 345
            +H+F AGD SHP+++ +   L +L +R + EG++P T  VL +V E+EKE  L  HSEK
Sbjct: 766 EVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEK 825

Query: 346 LALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCS 405
           LA+A+GIL TSPGT IR++KNLR+C+DCH   K IS+++ R II+RD  RFHRF+ G CS
Sbjct: 826 LAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCS 885

Query: 406 CGDYW 410
           CGDYW
Sbjct: 886 CGDYW 890



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALN----- 58
           +D+V+WN+++    +N +  EAL + REM+   VEPD+FT +SV+  C+ L  L      
Sbjct: 265 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
           HAY + N      ++ N  + +AL+DMY  C ++   + VFD +    + +WNAMI+G +
Sbjct: 325 HAYALKN----GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYS 380

Query: 119 IHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
            +    +A  +F  M E   +L +S T  G++ AC   G           +  R   + +
Sbjct: 381 QNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDR 440

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                 ++D+  R G I+ A  +   M  + D+V W  +++ 
Sbjct: 441 FVQ-NTLMDMYSRLGKIDIAMRIFGKME-DRDLVTWNTMITG 480



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 114/231 (49%), Gaps = 14/231 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           M D+ +  WN+MI G+ +N    EAL  F  M  S+ +  +  T A V+  C R GA + 
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  ++++ ++ +  +   L+DMYS+ GKI +A  +F  ++  D+  WN MI+G   
Sbjct: 424 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVF 483

Query: 120 HGLAADASAIFTKMEMF-----------NVLPDSITFLGLLTACSHCGLVEEGRKYFDHM 168
                DA  +  KM+             ++ P+SIT + +L +C+    + +G++   + 
Sbjct: 484 SEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYA 543

Query: 169 RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             + ++   +    A+VD+  + G ++ +  +   +  + +V+ W  ++ A
Sbjct: 544 -IKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMA 592



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 101/225 (44%), Gaps = 15/225 (6%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARL-------- 54
           +++ VSWNS+I       +++ AL  FR ML   VEP  FT  SV+  C+ L        
Sbjct: 161 ERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMM 220

Query: 55  GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMI 114
           G   HAY +      +K ELN  +   L+ MY K GK+  +K +  +    D+  WN ++
Sbjct: 221 GKQVHAYGL------RKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVL 274

Query: 115 SGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI 174
           S +  +    +A     +M +  V PD  T   +L ACSH  ++  G++   +     S+
Sbjct: 275 SSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSL 334

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                   A+VD+      +     +   M  +  + +W A+++ 
Sbjct: 335 DENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKIGLWNAMIAG 378



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 107/224 (47%), Gaps = 8/224 (3%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           W  ++   VR+    EA+  + +M+   ++PD + F +++   A L  +     +H  + 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 69  EKKIELNFILSA-ALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAIHGLAADA 126
           +    ++ +  A  L+++Y KCG      +VFD + +RN VS WN++IS +        A
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVS-WNSLISSLCSFEKWEMA 183

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY--GAM 184
              F  M   NV P S T + ++TACS+  +  EG      + +    + +L  +    +
Sbjct: 184 LEAFRCMLDENVEPSSFTLVSVVTACSNLPM-PEGLMMGKQVHAYGLRKGELNSFIINTL 242

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA-CRTFKRLE 227
           V + G+ G +  +  L+ S     D+V W  +LS+ C+  + LE
Sbjct: 243 VAMYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSSLCQNEQLLE 285


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 180/406 (44%), Positives = 256/406 (63%), Gaps = 3/406 (0%)

Query: 8   SWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLI 67
           SW SMI G+V+  +  EA+  F +M  + V+ ++ T  +V+  CA LGAL+    +H   
Sbjct: 194 SWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYS 253

Query: 68  IEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADAS 127
                + N  +S  LIDMY KCG ++ A +VF+ ++   V  W+AMI G+A+HG A +A 
Sbjct: 254 NRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEAL 313

Query: 128 AIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDL 187
            +F+ M    + P+ +TF+GLL ACSH GL+ EGR++F  M   Y I PQ+EHYG MVDL
Sbjct: 314 RLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDL 373

Query: 188 LGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI---VNISRLMGGDY 244
           L RAG + EA+  I +M M+P+ VVW ALL ACR  K +E+ E AI   + +  L  G Y
Sbjct: 374 LSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYY 433

Query: 245 VLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAID 304
           V+LSN+Y    RW+    VR+ MK + V+K+ G S + + GV+H+F AG+ SHP+ + I 
Sbjct: 434 VVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIF 493

Query: 305 KILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIRIS 364
           +    L++  + +G++P T +VL+D+ E EK   +  HSEKLAL +G++ T   T IRI 
Sbjct: 494 QRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIM 553

Query: 365 KNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           KNLRIC DCHS  K+IS ++ R I+VRDR RFH F    CSC DYW
Sbjct: 554 KNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 599



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 65/126 (51%), Gaps = 10/126 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH- 59
           M ++ VVSW++MIGG   + R +EALR F +M    +EP+  TF  +++ C+ +G ++  
Sbjct: 288 MEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEG 347

Query: 60  ----AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE-VFDTVQRNDVSVWNAMI 114
               A    +  I  +IE        ++D+ S+ G +  A E + +   + +  VW A++
Sbjct: 348 RRFFASMTRDYGIIPQIE----HYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALL 403

Query: 115 SGVAIH 120
               +H
Sbjct: 404 GACRVH 409



 Score = 41.6 bits (96), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 10/172 (5%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV--QRNDVSVWNAMISGVAIH 120
           VH  II+    L+ +    +  + +       A+++F  V  Q+ +  VWN+ +  +A  
Sbjct: 80  VHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALAEG 139

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               DA  +F ++  ++V PD+ T   +L AC +   +  GR     +      +     
Sbjct: 140 DSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE-----KVGFRS 194

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELG 229
           + +M+    + G  +EA  L   M    ++ + V   A+L+AC     L+LG
Sbjct: 195 WTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLG 246


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 175/410 (42%), Positives = 263/410 (64%), Gaps = 4/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K +VSWN MI  +++N+   +++  + +M   +VEPD  T ASV+  C  L AL     +
Sbjct: 265 KSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRI 324

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +  KK+  N +L  +LIDMY++CG ++ AK VFD ++  DV+ W ++IS   + G  
Sbjct: 325 HEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQG 384

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A A+FT+M+     PDSI F+ +L+ACSH GL+ EG+ YF  M   Y I P +EH+  
Sbjct: 385 YNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFAC 444

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
           +VDLLGR+G ++EAY +I  M M+P+  VW ALLS+CR +  +++G +A   ++ ++   
Sbjct: 445 LVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEE 504

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G YVLLSN+Y    RW     +R +MK++ +RK  G S +EL   +H F AGD  HP++
Sbjct: 505 SGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTYHPQS 564

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + I + L  L+ + K  G++P T+  L DV EE+KE +L  HSEKLA+ + IL T   + 
Sbjct: 565 KEIYEELSVLVGKMKELGYVPKTDSALHDVEEEDKECHLAVHSEKLAIVFAILNTQE-SP 623

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IRI+KNLR+C DCH   K+IS++++R I++RD  RFH F+ G+CSCGDYW
Sbjct: 624 IRITKNLRVCGDCHIAAKLISKIVQREIVIRDTNRFHHFKDGICSCGDYW 673



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 132/290 (45%), Gaps = 15/290 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+++V+ +N MI  ++ N  +D+AL  FR+M+S    PD +T+  V+  C+    L   
Sbjct: 93  IPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIG 152

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  + +  ++LN  +   LI +Y KCG +  A+ V D +Q  DV  WN+M++G A +
Sbjct: 153 LQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQN 212

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               DA  I  +M+     PD+ T   LL A ++     E   Y + M      +  L  
Sbjct: 213 MQFDDALDICREMDGVRQKPDACTMASLLPAVTNTS--SENVLYVEEMFMNLE-KKSLVS 269

Query: 181 YGAMVDLLGR---AGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
           +  M+ +  +    G   + Y  +    +EPD +   ++L AC     L LG      + 
Sbjct: 270 WNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVE 329

Query: 238 RLMGGDYVLLSN----MYCYLKRWDTAENVREIMKKKGVRKSQGKSWLEL 283
           R      +LL N    MY      + A+ V + MK + V      SW  L
Sbjct: 330 RKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDV-----ASWTSL 374



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 12/162 (7%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH+ +       N  L   L+  Y+  G+  +A+ VFD +   +V  +N MI     + L
Sbjct: 54  VHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHL 113

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACS-----HCGLVEEGRKYFDHMRSRYSIQPQ 177
             DA  +F  M      PD  T+  +L ACS       GL   G  +      +  +   
Sbjct: 114 YDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVF------KVGLDLN 167

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           L     ++ L G+ G + EA  ++  M  + DVV W ++++ 
Sbjct: 168 LFVGNGLIALYGKCGCLPEARCVLDEMQSK-DVVSWNSMVAG 208


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 175/413 (42%), Positives = 252/413 (61%), Gaps = 4/413 (0%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            +P KD+VSWN+MIGG+ +N+  +EAL+ F EM   +  PD  T A ++  C  L AL   
Sbjct: 816  IPVKDIVSWNTMIGGYSKNSLPNEALKLFAEM-QKESRPDGITMACLLPACGSLAALEIG 874

Query: 61   YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              +H  I+         ++ ALIDMY KCG +  A+ +FD +   D+  W  MISG  +H
Sbjct: 875  RGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMH 934

Query: 121  GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            GL  +A A F KM +  + PD ITF  +L ACSH GL+ EG  +F+ M S  +++P+LEH
Sbjct: 935  GLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEH 994

Query: 181  YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
            Y  MVDLL R G++ +AY LI +M ++PD  +W ALL  CR    +EL E    ++  L 
Sbjct: 995  YACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELE 1054

Query: 240  --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                G YVLL+N+Y   ++W+  + +RE + K+G++KS G SW+E+ G    F + D +H
Sbjct: 1055 PDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAH 1114

Query: 298  PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            P+A++I  +L +L  + K+EG  P     L++  + EKE  L  HSEKLA+A+GIL    
Sbjct: 1115 PQAKSIFSLLNNLRIKMKNEGHSPKMRYALINAGDMEKEVALCGHSEKLAMAFGILNLPS 1174

Query: 358  GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  IR++KNLR+C DCH   K +S+  RR II+RD  RFH F+ G CSC D+W
Sbjct: 1175 GRTIRVAKNLRVCDDCHEMAKFMSKTTRREIILRDSNRFHHFKDGFCSCRDFW 1227



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/240 (34%), Positives = 124/240 (51%), Gaps = 8/240 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K VVSW S+I  +VR   +D+A+R F EM S  V PD ++  SV++ CA   +L+  
Sbjct: 715 MGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKG 774

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VHN I +  + L   +S AL+DMY+KCG ++ A  VF  +   D+  WN MI G + +
Sbjct: 775 RDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKN 834

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
            L  +A  +F +M+     PD IT   LL AC     +E GR      +R+ YS   +L 
Sbjct: 835 SLPNEALKLFAEMQK-ESRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYS--SELH 891

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
              A++D+  + G +  A  L+  M  E D++ W  ++S C       LG  AI    ++
Sbjct: 892 VANALIDMYVKCGSLVHAR-LLFDMIPEKDLITWTVMISGCGMHG---LGNEAIATFQKM 947



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 115/217 (52%), Gaps = 2/217 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + D+DVVSWNSMI G V N     AL FF +ML  +V  D  T  + +  CA +G+L+  
Sbjct: 614 LGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLG 673

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++       + +  L+DMYSKCG +  A + F+ + +  V  W ++I+     
Sbjct: 674 RALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVRE 733

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  DA  +F +ME   V PD  +   +L AC+    +++GR   +++R + ++   L  
Sbjct: 734 GLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIR-KNNMALCLPV 792

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             A++D+  + G +EEAY L+ S     D+V W  ++
Sbjct: 793 SNALMDMYAKCGSMEEAY-LVFSQIPVKDIVSWNTMI 828



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 106/220 (48%), Gaps = 4/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + D  V  WN M+  + +   + E++  F++M    +  + +TF+ ++   A LG +   
Sbjct: 513 LSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGEC 572

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  + +        +  +LI  Y K G++  A ++FD +   DV  WN+MISG  ++
Sbjct: 573 KRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMN 632

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
           G +  A   F +M +  V  D  T +  + AC++ G +  GR      +++ +S +    
Sbjct: 633 GFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFN 692

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +   ++D+  + G++ +A      M  +  VV W +L++A
Sbjct: 693 N--TLLDMYSKCGNLNDAIQAFEKMG-QKTVVSWTSLIAA 729



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 99/216 (45%), Gaps = 13/216 (6%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIE 69
           N+ I  F        A+   R  +S K E D   ++S++  CA    L     VH++I  
Sbjct: 422 NTKICKFCEVGDLRNAVELLR--MSQKSELDLNAYSSILQLCAEHKCLQEGKMVHSVISS 479

Query: 70  KKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAIHGLAADASA 128
             I +  +L A L+ MY  CG ++  + +FD +   N V +WN M+S  A  G   ++  
Sbjct: 480 NGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIY 539

Query: 129 IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLL 188
           +F KM+   +  +S TF  +L   +  G V E ++    +      +     Y  +V+ L
Sbjct: 540 LFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCV-----YKLGFGSYNTVVNSL 594

Query: 189 ----GRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
                ++G ++ A+ L   +  + DVV W +++S C
Sbjct: 595 IATYFKSGEVDSAHKLFDELG-DRDVVSWNSMISGC 629


>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 180/415 (43%), Positives = 251/415 (60%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK--VEPDKFTFASVIYGCARLGALN 58
           +P  D VSWN +I   + N R  +ALR F  M S+    EPD  T   ++  CA LGAL 
Sbjct: 229 IPQWDTVSWNVLISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALE 288

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               VHN I E   +    L  +LI MYS+CG+++ A  +F  +   +V  W+AMISG A
Sbjct: 289 FGERVHNYIEEHGYDGALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFA 348

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG   +A   F +M+   V PD  T  G+L+ACSHCGLV++G  +FD M   + I+P +
Sbjct: 349 MHGYGREAIEAFEQMQQLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNI 408

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
            HYG MVDLLGRAG +++AY LI SM ++PD  +WR LL ACR  +   LGE  I ++  
Sbjct: 409 HHYGCMVDLLGRAGLLDQAYQLIMSMVIKPDSTLWRTLLGACRIHRHATLGERVIGHLIE 468

Query: 239 LM---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L     GDYVLL N+Y  +  WD   ++R+ MK+KG++ S G S +EL G +H+F   D 
Sbjct: 469 LKAQEAGDYVLLLNIYSSVGNWDKVTDLRKFMKEKGIQTSPGCSTIELKGKVHEFVVDDI 528

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
            HP    I ++L  + ++ K  G++      L ++  EEK   L +HSEKLA+A+G+L T
Sbjct: 529 LHPRTDEIYEMLDEIGKQLKIAGYVAELSSELHNLGAEEKGNRLSYHSEKLAIAFGVLAT 588

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            PGT IR++KNLRIC DCH++ K++S    R +++RDR RFH F  G CSC  YW
Sbjct: 589 PPGTTIRVAKNLRICVDCHNFAKVLSGAYNREVVIRDRTRFHHFREGQCSCNGYW 643



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 104/213 (48%), Gaps = 4/213 (1%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           +N MI  +  +   ++    +REM    V P+  + + V+  C R+ +L     +H  I+
Sbjct: 136 YNVMIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRISSLMGGLQIHARIL 195

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
               + + +L   L+D+YS C K + A +VFD + + D   WN +IS    +    DA  
Sbjct: 196 RDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCCIHNRRTRDALR 255

Query: 129 IFTKMEMF--NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186
           +F  M+       PD +T L LL AC++ G +E G +  +++   +     L    +++ 
Sbjct: 256 MFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIE-EHGYDGALNLCNSLIT 314

Query: 187 LLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +  R G +E+AY +   M  E +VV W A++S 
Sbjct: 315 MYSRCGRLEKAYSIFKRMD-ERNVVSWSAMISG 346


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 179/411 (43%), Positives = 249/411 (60%), Gaps = 4/411 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDVVSW SMI  +V N   ++AL  F  M  + +EPD  T  S++     L  L     +
Sbjct: 425 KDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEI 484

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  II K   L   +S  L+DMY++CG ++ A ++F   +  ++ +W AMIS   +HG  
Sbjct: 485 HGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYG 544

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  +F +M+   ++PD ITFL LL ACSH GLV EG+ + + M+  Y ++P  EHY  
Sbjct: 545 EAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTC 604

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---M 240
           +VDLLGR   +EEAY ++ SM  EP   VW ALL ACR     E+GEVA   +  L    
Sbjct: 605 LVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEVAAEKLLELDLDN 664

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G+YVL+SN++    RW   E VR  MK  G+ K+ G SW+E+   IH F + D+ HPE 
Sbjct: 665 PGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWIEVGNKIHAFLSRDKLHPEC 724

Query: 301 QAIDKILGSLIQRTKSE-GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
             I + L  + ++ K E G++  T+ VL +V EEEK   LY HSE+LA+AYG+L T+ GT
Sbjct: 725 DKIYQKLAQVTEKLKREGGYVAQTKFVLHNVGEEEKVQMLYGHSERLAIAYGLLATAEGT 784

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IR++KNLR+C DCHS+  ++SR   R +IVRD  RFH F+ G+CSCGD+W
Sbjct: 785 PIRVTKNLRVCGDCHSFCTLVSRFFERELIVRDASRFHHFKDGMCSCGDFW 835



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 115/220 (52%), Gaps = 5/220 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD++SW +   G+ +N  + +AL   R++    ++ D     S++  C  L  L   
Sbjct: 322 MAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKI 381

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   I   +  + +L   +ID+Y +CG I  A  +F++++  DV  W +MIS    +
Sbjct: 382 KEIHGYTIRGGLS-DPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHN 440

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
           GLA  A  +F+ M+   + PD +T + +L+A      +++G++     +R  + ++  + 
Sbjct: 441 GLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSIS 500

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +   +VD+  R G +E+AY + T  T   ++++W A++SA
Sbjct: 501 N--TLVDMYARCGSVEDAYKIFTC-TKNRNLILWTAMISA 537



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 115/221 (52%), Gaps = 9/221 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  KD+V+WNSM+ GF++N  + EAL FF ++ ++ ++PD+ +  S+I    RLG L + 
Sbjct: 221 LEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNG 280

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   I+   + N ++   LIDMY+KC  +      FD +   D+  W    +G A +
Sbjct: 281 KEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQN 340

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACS--HC-GLVEEGRKYFDHMRSRYSIQPQ 177
                A  +  +++M  +  D+     +L AC   +C G ++E   Y   +R   S  P 
Sbjct: 341 KCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGY--TIRGGLS-DPV 397

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
           L++   ++D+ G  G I+ A  +  S+  + DVV W +++S
Sbjct: 398 LQN--TIIDVYGECGIIDYAVRIFESIECK-DVVSWTSMIS 435



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 112/222 (50%), Gaps = 7/222 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++ + +WN+M+GG+V N     AL  +REM    V  D +TF  ++  C  +  L   
Sbjct: 18  MSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGIVEDLFCG 77

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
             +H L I+   +    +  +L+ +Y+KC  I  A+++FD +  RNDV  WN++IS  + 
Sbjct: 78  AEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSG 137

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G+  +A  +F++M    V+ ++ TF   L AC     ++ G +    +     +   L+
Sbjct: 138 NGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRV---LD 194

Query: 180 HY--GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            Y   A+V +  R G + EA  +I       D+V W ++L+ 
Sbjct: 195 VYVANALVAMYVRFGKMPEA-AVIFGNLEGKDIVTWNSMLTG 235



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 85/160 (53%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
            DVVSWNS+I  +  N    EAL  F EML + V  + +TFA+ +  C     +     +
Sbjct: 123 NDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQI 182

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  I++    L+  ++ AL+ MY + GK+  A  +F  ++  D+  WN+M++G   +GL 
Sbjct: 183 HAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLY 242

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
           ++A   F  ++  ++ PD ++ + ++ A    G +  G++
Sbjct: 243 SEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKE 282



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 5/137 (3%)

Query: 85  MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSIT 144
           MY KCG +  A+ +FD +    +  WNAM+ G   +G A  A  ++ +M    V  DS T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 145 FLGLLTACSHCGLVEE--GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
           F  LL A   CG+VE+         +  +Y     +    ++V L  +   I  A  L  
Sbjct: 61  FPVLLKA---CGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFD 117

Query: 203 SMTMEPDVVVWRALLSA 219
            M +  DVV W +++SA
Sbjct: 118 RMYVRNDVVSWNSIISA 134



 Score = 45.4 bits (106), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA-Y 61
           +++++ W +MI  +  +   + A+  F  M   K+ PD  TF +++Y C+  G +N    
Sbjct: 525 NRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKS 584

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS-VWNAMISGVAIH 120
           ++  +  E ++E        L+D+  +   ++ A ++  ++Q      VW A++    IH
Sbjct: 585 FLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIH 644


>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
          Length = 651

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 174/413 (42%), Positives = 253/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D +SW++++GG+V+    + AL  FR M+   V P++    + +   ARLG L H 
Sbjct: 239 MPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHG 298

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            +VHN++    + +   + AAL+DMY+KCG + +A+EVFD ++R DV  WNAMI G+A H
Sbjct: 299 KFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAH 358

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  DA  +F +     + P ++TF+G+L  CS  GLV EGR+YF  +  +Y I+P++EH
Sbjct: 359 GLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEH 418

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDLLGRAG + EA  LI  M + PD V+W  +LS+C+T   ++LG      ++ + 
Sbjct: 419 YGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELD 478

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLS +Y    +WD    VR++M  +G  KS G S +E  G +H+F  GD  H
Sbjct: 479 PTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEAHGKVHKFLVGDTYH 538

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            ++  I   L  + +R    G++P    VL D+ EEEK   +  HSE+LA+AYG +    
Sbjct: 539 KDSVQIYDTLDMINKRLTEAGYVPDVSSVLHDIGEEEKVHAVKVHSERLAIAYGFIVLEA 598

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G+ IRI KNLR+C DCH + KM++ + +R IIVRD  RFH  + G CSC DYW
Sbjct: 599 GSPIRIVKNLRVCGDCHEFSKMVTMVFQREIIVRDGSRFHHMKEGKCSCLDYW 651



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 4/133 (3%)

Query: 86  YSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145
           Y + G + +A+EVFD +   D   W+ ++ G         A  +F  M    V P+    
Sbjct: 223 YVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAV 282

Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG-AMVDLLGRAGHIEEAYGLITSM 204
           +  L+A +  GL+E G+  F H   + S  P   + G A+VD+  + G +  A  +   M
Sbjct: 283 VTALSAAARLGLLEHGK--FVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGM 340

Query: 205 TMEPDVVVWRALL 217
               DV  W A++
Sbjct: 341 RRR-DVFAWNAMI 352


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 174/413 (42%), Positives = 251/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP + VV+WN++I G  +N   +E L  +  M  +   PDK TF SV+  C+ L  L   
Sbjct: 255 MPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQG 314

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +I+        + ++LI MYS+ G ++ + + F   +  DV +W++MI+    H
Sbjct: 315 QQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFH 374

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +ME   +  + +TFL LL ACSH GL E+G +YFD M  +Y ++P++EH
Sbjct: 375 GRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEH 434

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE---VAIVNIS 237
           Y  +VDLLGRAG +EEA G+I SM ++PD ++W+ LL+AC+  K  E+ E     I+ + 
Sbjct: 435 YTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAERISEEIIKLD 494

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
            L    YVLLSN++   + W     +R+ M+ + VRK  G SWLEL  ++HQF  GD+SH
Sbjct: 495 PLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNLVHQFSMGDKSH 554

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+   ID  L  L+   K  G++P    VL D+  EEKE NL HHSEK A+A+ ++ TS 
Sbjct: 555 PQYFEIDLYLKELMSELKQHGYVPELGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSE 614

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IR+ KNLR+C DCH+ IK ISR+  R IIVRD  RFH F+ G CSCG+YW
Sbjct: 615 NVPIRVMKNLRVCDDCHNAIKCISRIRNREIIVRDASRFHHFKDGECSCGNYW 667



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 113/219 (51%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++++ +WN+MI G  +     +AL  F+EM      PD+FT  SV+ GCA L +L   
Sbjct: 154 MSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAG 213

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +++   EL+ ++ ++L  MY K G +   +++  ++    V  WN +I+G A +
Sbjct: 214 QEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQN 273

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +    +  M+M    PD ITF+ +L+ACS    + +G++    +  +      L  
Sbjct: 274 GCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEV-IKAGASSVLAV 332

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +++ +  R+G +E++           DVV+W ++++A
Sbjct: 333 VSSLISMYSRSGCLEDSIKAFVDRE-NFDVVLWSSMIAA 370



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/221 (20%), Positives = 96/221 (43%), Gaps = 35/221 (15%)

Query: 31  EMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCG 90
           +  +S++  D   F+ ++  C +LG+L     VH+LII      +  +S  L++ YSK G
Sbjct: 52  DTFTSEIWSDPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLG 111

Query: 91  K-------------------------------IQMAKEVFDTVQRNDVSVWNAMISGVAI 119
           +                               ++ A+++FD +   +++ WNAMI+G+  
Sbjct: 112 QFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQ 171

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQL 178
                 A ++F +M     LPD  T   +L  C+    +  G++ +   ++  + +   +
Sbjct: 172 FEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVV 231

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               ++  +  ++G + +   LI SM +   VV W  L++ 
Sbjct: 232 G--SSLAHMYIKSGSLSDGEKLIKSMPIRT-VVAWNTLIAG 269


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 181/413 (43%), Positives = 246/413 (59%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D +SW +MI G+ ++ + +EAL  F +M       ++   A  +  CA + AL   
Sbjct: 365 MPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELG 424

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++   +  +I   AL+ MY KCG I+ A +VF+ +   D+  WN MI+G A H
Sbjct: 425 KQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARH 484

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A A+F  M+M  + PD +T +G+L+ACSH G V++G +YF+ M   Y I    +H
Sbjct: 485 GFGKEALALFESMKM-TIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKH 543

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  M+DLLGRAG ++EA  L+ SM   PD   W ALL A R     ELGE A   +  + 
Sbjct: 544 YTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEME 603

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    RW     +R  M+ KGV+K  G SW+E+    H F  GD SH
Sbjct: 604 PDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSH 663

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PEA+ I   L  L    K +GF+ +T+LVL DV EEEKE  L +HSEKLA+A+GIL   P
Sbjct: 664 PEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPP 723

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH+ IK IS++ +R IIVRD  RFH F  G CSCGDYW
Sbjct: 724 GRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 24/226 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P +DV +W +M+ GFV+N   DEA R F EM     E ++ ++ ++I G          
Sbjct: 272 LPIRDVFAWTAMVSGFVQNGMLDEATRIFEEM----PEKNEVSWNAMIAG---------- 317

Query: 61  YWVHNLIIEKKIEL-------NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAM 113
            +V +  IEK  EL       N      ++  Y++CG I  AK +FD + + D   W AM
Sbjct: 318 -YVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAM 376

Query: 114 ISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
           ISG A  G + +A  +F KM+    + +       L++C+    +E G++    +  +  
Sbjct: 377 ISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRL-VKAG 435

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            Q       A++ + G+ G IEEA+ +   +T E D+V W  +++ 
Sbjct: 436 FQTGYIAGNALLAMYGKCGSIEEAFDVFEDIT-EKDIVSWNTMIAG 480



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 129/288 (44%), Gaps = 68/288 (23%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML--------------------------- 33
           MP+KDVVSWN+M+ GF +N   +EA + F +ML                           
Sbjct: 148 MPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLF 207

Query: 34  SSKVEPDKFTFASVIYGCARLGALNHAYWVHN-LIIEKKIELNFILSAALIDMYSKCGKI 92
            SK++ +  ++  ++ G  R   L+ A  + + + +  KI  N +++      Y++ G +
Sbjct: 208 DSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITG-----YAQNGLL 262

Query: 93  QMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM------------------- 133
             A+ +F+ +   DV  W AM+SG   +G+  +A+ IF +M                   
Sbjct: 263 SEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQ 322

Query: 134 ------EMFNVLP--DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
                 E+F+ +P  ++ ++  ++T  + CG +++ +  FD M  R  I      + AM+
Sbjct: 323 QIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCIS-----WAAMI 377

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRAL---LSACRTFKRLELGE 230
               ++G  EEA  L   M  +  ++   AL   LS+C     LELG+
Sbjct: 378 SGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGK 425



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 117/228 (51%), Gaps = 20/228 (8%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPD+D++SWN M+ G+V+N     A   F +M     E D  ++ +++ G A+ G +  A
Sbjct: 117 MPDRDLISWNVMLSGYVKNGNLSAARALFNQM----PEKDVVSWNAMLSGFAQNGFVEEA 172

Query: 61  YWVHN-LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             + + ++++ +I  N +LSA     Y + G+I+ A+ +FD+    ++  WN ++ G   
Sbjct: 173 RKIFDQMLVKNEISWNGLLSA-----YVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVR 227

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
                DA ++F +M     + D I++  ++T  +  GL+ E R+ F+ +  R      + 
Sbjct: 228 KKRLDDARSLFDRMP----VRDKISWNIMITGYAQNGLLSEARRLFEELPIR-----DVF 278

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
            + AMV    + G ++EA  +   M  E + V W A+++     +++E
Sbjct: 279 AWTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMIAGYVQSQQIE 325



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 14/165 (8%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGAL-NHAY 61
           D D+V WN  I  ++R  + + AL  F  M            ++V Y     G L N+ +
Sbjct: 57  DSDIVKWNRKISAYMRKGQCESALSVFNGMRRR---------STVTYNAMISGYLSNNKF 107

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
                + EK  + + I    ++  Y K G +  A+ +F+ +   DV  WNAM+SG A +G
Sbjct: 108 DCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNG 167

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD 166
              +A  IF +M    ++ + I++ GLL+A    G +E+ R+ FD
Sbjct: 168 FVEEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFD 208


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 180/410 (43%), Positives = 259/410 (63%), Gaps = 3/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD +S+ +++ G+V+N + +EA   F++M +  V+PD  T  S+I  C+ L AL H    
Sbjct: 370 KDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCS 429

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I + + L   +  +LIDMY+KCG+I ++++VFD +   D+  WN MI+G  IHGL 
Sbjct: 430 HGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLG 489

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A+ +F  M+     PD +TF+ L+ ACSH GLV EG+ +FD M  +Y I P++EHY  
Sbjct: 490 KEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYIC 549

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG-- 241
           MVDLL R G ++EAY  I SM ++ DV VW ALL ACR  K ++LG+     I +L    
Sbjct: 550 MVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEG 609

Query: 242 -GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G++VLLSN++    R+D A  VR I K KG +KS G SW+E+ G +H F  GD+SHP +
Sbjct: 610 TGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCS 669

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
             I   L +++   K  G+   T  VL D+ EEEKE  L +HSEKLA+A+G+L  +    
Sbjct: 670 PDIYHELDNILIDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKT 729

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           I ++KNLR+C DCH+ IK ++ +  R IIVRD  RFH F+ G CSCGD+W
Sbjct: 730 IFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDANRFHHFKNGQCSCGDFW 779



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 116/262 (44%), Gaps = 50/262 (19%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKF----TFASVIYGCARLGA 56
           M  ++ V+W+++IGGFV   R  EA   F++ML   VE   F    + AS +  CA L  
Sbjct: 265 MTVRNEVTWSALIGGFVLCDRMTEAFNLFKDML---VEGMCFLSATSVASALRVCASLAD 321

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
           L     +H L+ +  I  +     +L+ MY+K G I  A  +FD +   D   + A++SG
Sbjct: 322 LRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSG 381

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH---------------------- 154
              +G A +A  +F KM+  NV PD  T + L+ ACSH                      
Sbjct: 382 YVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALE 441

Query: 155 -------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
                        CG ++  R+ FD M +R      +  +  M+   G  G  +EA  L 
Sbjct: 442 TSICNSLIDMYAKCGRIDLSRQVFDKMPAR-----DIVSWNTMIAGYGIHGLGKEATTLF 496

Query: 202 TSMT---MEPDVVVWRALLSAC 220
            SM     EPD V +  L++AC
Sbjct: 497 LSMKNQGFEPDDVTFICLIAAC 518



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 16/226 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  D  ++N++I  +     F  A+  +R ML  +V P+K+TF  V+  C+ L  L   
Sbjct: 59  IPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKACSALADLCAG 118

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H       +  +  +S ALID+Y +C +   A  VF  +   DV  WNAM++G A H
Sbjct: 119 RTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANH 178

Query: 121 GLAADASAIFTKMEMFNVL-PDSITFLGLLTACSHCGLVEEG--------RKYFDHMRSR 171
           G+   A A    M+    L P++ T + LL   +  G + +G        R Y D    +
Sbjct: 179 GMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQ 238

Query: 172 YSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             I        A++D+  +  H+  A  +   MT+  + V W AL+
Sbjct: 239 VLIGT------ALLDMYAKCKHLVYACRVFHGMTVRNE-VTWSALI 277



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 132/320 (41%), Gaps = 54/320 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           MP +DVV+WN+M+ G+  +  +  A+    +M     + P+  T  S++   A+ GAL  
Sbjct: 160 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQ 219

Query: 60  AYWVHNLIIEKKIELN---FILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMIS 115
              VH   +   ++ N    ++  AL+DMY+KC  +  A  VF  +  RN+V+ W+A+I 
Sbjct: 220 GTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVT-WSALIG 278

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLG---------------------------- 147
           G  +     +A  +F  M +  +   S T +                             
Sbjct: 279 GFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIH 338

Query: 148 --------LLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199
                   LL+  +  GL+ E    FD +  + +I      YGA++    + G  EEA+ 
Sbjct: 339 ADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTIS-----YGALLSGYVQNGKAEEAFL 393

Query: 200 LITSM---TMEPDVVVWRALLSACRTFKRLELGEVA----IVNISRLMGGDYVLLSNMYC 252
           +   M    ++PD+    +L+ AC     L+ G  +    I+    L       L +MY 
Sbjct: 394 VFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYA 453

Query: 253 YLKRWDTAENVREIMKKKGV 272
              R D +  V + M  + +
Sbjct: 454 KCGRIDLSRQVFDKMPARDI 473



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+VSWN+MI G+  +    EA   F  M +   EPD  TF  +I  C+  G +   
Sbjct: 468 MPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEG 527

Query: 61  -YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
            +W   +  +  I         ++D+ ++ G +  A +   ++  + DV VW A++    
Sbjct: 528 KHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACR 587

Query: 119 IH 120
           IH
Sbjct: 588 IH 589



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 2/129 (1%)

Query: 90  GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
           G++ +A++VFD +   D   +NA+I   +  G    A  ++  M  F V P+  TF  +L
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
            ACS    +  GR    H  +   +   L    A++DL  R      A  +   M M  D
Sbjct: 107 KACSALADLCAGRTIHAHA-AAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMR-D 164

Query: 210 VVVWRALLS 218
           VV W A+L+
Sbjct: 165 VVAWNAMLA 173


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 171/416 (41%), Positives = 267/416 (64%), Gaps = 6/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           MP +D VSWN++I G+++N    EA+  +  M   + ++P + TF SV+   + LGAL  
Sbjct: 333 MPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQ 392

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H L I+  + L+  +   +ID+Y+KCGK+  A  +F+   R     WNA+ISGV +
Sbjct: 393 GTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGV 452

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG  A A ++F++M+   + PD +TF+ LL ACSH GLV++GR +F+ M++ Y I+P  +
Sbjct: 453 HGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAK 512

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY  MVD+ GRAG +++A+  I +M ++PD  +W ALL ACR    +E+G+VA  N+  L
Sbjct: 513 HYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFEL 572

Query: 240 MG---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVL+SNMY  + +WD  + VR +++++ ++K+ G S +E+   ++ F +G++ 
Sbjct: 573 DPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQM 632

Query: 297 --HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
             HP+ + I + L  L+ + +S G++P    VL DV E+EKE  L +HSE+LA+A+GI+ 
Sbjct: 633 NIHPQHEEIQRELLDLLAKIRSLGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIIN 692

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T P T + I KNLR+C DCH+  K IS++  R IIVRD  RFH F+ G CSCGD+W
Sbjct: 693 TPPRTPLHIYKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGYCSCGDFW 748



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 108/219 (49%), Gaps = 1/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DV +WN+M+ G  RNAR  EA+  F  M+   V  D  T +SV+  C  LG    A
Sbjct: 130 MRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALA 189

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++  ++    +  A+ID+Y K G ++  ++VFD +   D+  WN++ISG    
Sbjct: 190 LAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQG 249

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  A A  +F  M    V PD +T L L +A + CG +  GR    +M  R      +  
Sbjct: 250 GQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIA 309

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A+VD+  +   IE A  +  SM +  D V W  L++ 
Sbjct: 310 GNAIVDMYAKLSKIEAAQRMFDSMPVR-DAVSWNTLITG 347



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 113/221 (51%), Gaps = 4/221 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D+V+WNS+I G  +  +   A+  F  M  S V PD  T  S+    A+ G +   
Sbjct: 231 MSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGG 290

Query: 61  YWVHNLIIEKKIELNFILSA-ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             VH  ++ +  ++  I++  A++DMY+K  KI+ A+ +FD++   D   WN +I+G   
Sbjct: 291 RSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQ 350

Query: 120 HGLAADASAIFTKMEMFNVL-PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +GLA++A  ++  M+    L P   TF+ +L A SH G +++G +    +  +  +   +
Sbjct: 351 NGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTR-MHALSIKTGLNLDV 409

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                ++DL  + G ++EA  L+   T       W A++S 
Sbjct: 410 YVGTCVIDLYAKCGKLDEAM-LLFEQTPRRSTGPWNAVISG 449



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 75/142 (52%), Gaps = 4/142 (2%)

Query: 79  SAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNV 138
           S AL+  Y + G+++ A   FD ++  DV  WNAM+SG+  +  AA+A  +F +M M  V
Sbjct: 107 SGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGV 166

Query: 139 LPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLEHYGAMVDLLGRAGHIEEA 197
             D++T   +L  C   G  +       H+ + ++ +  +L    AM+D+ G+ G +EE 
Sbjct: 167 AGDAVTVSSVLPMCVLLG--DRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEV 224

Query: 198 YGLITSMTMEPDVVVWRALLSA 219
             +   M+   D+V W +++S 
Sbjct: 225 RKVFDGMSSR-DLVTWNSIISG 245


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 174/412 (42%), Positives = 260/412 (63%), Gaps = 4/412 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +KD V W  MI G  +N + ++AL  F EML     PD +T +SV+  CA+L +L H   
Sbjct: 284 EKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQV 343

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH       +  + ++S+AL+DMY KCG  + A  +F T+Q  +V  WN+MI G A++G 
Sbjct: 344 VHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQ 403

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A +++  M   N+ PDS+TF+G+L+AC H GLVEEG++YF  M  ++ ++P  +HY 
Sbjct: 404 DLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYA 463

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            MV+L GR+GH+++A  LI+SM+ EP+ ++W  +LS C     ++ GE+A   ++ ++  
Sbjct: 464 CMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIELNPF 523

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
               Y++LSNMY    RW    ++R +MK K V+K    SW+E+   +H+F A DR+HP+
Sbjct: 524 NAVPYIMLSNMYAARGRWKDVASIRSLMKSKHVKKFSAYSWIEIDNEVHKFVADDRTHPD 583

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG- 358
           A+ I   L  LI++ +  GF P T LVL D  E+EK  ++ +HSEKLALAYG++K   G 
Sbjct: 584 AKIIHVQLNRLIRKLQEAGFSPNTNLVLHDFGEDEKLESINYHSEKLALAYGLIKKPHGV 643

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T IRI KN+R C DCH ++K +S + RR +I+RD  RFH F  G CSC DYW
Sbjct: 644 TPIRIIKNIRTCADCHIFMKFVSNITRRPVILRDSNRFHHFVEGKCSCKDYW 695



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 136/280 (48%), Gaps = 14/280 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D VS+N++I GF  N R   AL  F  M    ++P ++T  SV+  C +L  L   
Sbjct: 115 MPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRG 174

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  II   +  N  +  AL D+Y++CG+I  A+ +FD +   +V  WN MISG   +
Sbjct: 175 KQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKN 234

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                   +F +M++ N+ PD +T   +L A    G ++E RK F  +R +  +      
Sbjct: 235 RQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVC----- 289

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELGEVAIVNIS 237
           +  M+    + G  E+A  L + M +E   PD     +++S+C     L  G+V +   +
Sbjct: 290 WTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQV-VHGKA 348

Query: 238 RLMG-GDYVLLS----NMYCYLKRWDTAENVREIMKKKGV 272
            LMG  D +L+S    +MYC       A  +   M+ + V
Sbjct: 349 FLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNV 388



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 70/145 (48%), Gaps = 5/145 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  ++VVSWNSMIGG+  N +  EAL  +  ML   ++PD  TF  V+  C   G +   
Sbjct: 383 MQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEG 442

Query: 61  Y-WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVA 118
             +  ++  +  +E      A +++++ + G +  A ++  ++ Q  +  +W  ++S   
Sbjct: 443 KEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCV 502

Query: 119 IHGLAAD---ASAIFTKMEMFNVLP 140
           + G       A+    ++  FN +P
Sbjct: 503 MKGDIKHGEMAARCLIELNPFNAVP 527



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 97/204 (47%), Gaps = 9/204 (4%)

Query: 18  RNARFDEALRFFREMLSSKVEP-DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNF 76
           R +  D+A R    M     +P D F    ++   A+ G ++HA  + + + ++    NF
Sbjct: 34  RASDVDQAKRLKSHMHLHLFKPNDTFIHNRLLNLYAKSGEISHARKLFDEMTQRD---NF 90

Query: 77  ILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMF 136
             +A ++ +Y+K G ++  + +FD +   D   +N +ISG A +G    A  +F +M+  
Sbjct: 91  SWNA-MLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKE 149

Query: 137 NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY-SIQPQLEHYGAMVDLLGRAGHIE 195
            + P   T + +L AC+    +  G++   H R    ++   +    A+ DL  R G I+
Sbjct: 150 GLKPTEYTHVSVLNACTQLLDLRRGKQI--HGRIIICNLGGNVFVCNALTDLYARCGEID 207

Query: 196 EAYGLITSMTMEPDVVVWRALLSA 219
           +A  L   M +  +VV W  ++S 
Sbjct: 208 QARRLFDRMVIR-NVVTWNLMISG 230


>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
 gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
          Length = 605

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 174/415 (41%), Positives = 260/415 (62%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++++VSWN+M+ G+V+  RF +AL  F EM +  V+ + F  A+ +  C   GAL   
Sbjct: 191 MPERNLVSWNAMMSGYVKACRFLDALEVFDEMRARGVDGNVFVAATAVVACTGAGALARG 250

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ--RNDVSVWNAMISGVA 118
             VH  + +  I+++  L+ A++DMY KCG ++ A  VF+ +      ++ WN MI G A
Sbjct: 251 REVHRWVEQSGIQMDEKLATAVVDMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFA 310

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG   DA  +F +ME   V PD +T + +LTAC+H G++ EGR YF+++  RY I+P++
Sbjct: 311 VHGRGEDALKLFGRMEREGVAPDDVTLVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKM 370

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV---AIVN 235
           EHYG MVDL GRAG +EEA  +I  M MEPDV V  AL  A +    ++LGE     ++ 
Sbjct: 371 EHYGCMVDLYGRAGRLEEAKKVIQDMPMEPDVGVLGALFGASKIHGDVDLGEAIGWRVIE 430

Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           +     G YVLL+N+     RW+    VR +M ++ V K  G+S +E+ G + +F+ G  
Sbjct: 431 LDPQNSGRYVLLANLLATAGRWEDVARVRRLMDERNVSKEAGRSVIEVQGEVCEFQCGGL 490

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
            HP A+ +  +   +++  ++EG++P T  VL  ++EEEKE  L +HSEKLA+A+G+L T
Sbjct: 491 CHPRAEEVYAMARDMMREIRAEGYVPDTRDVLHAIAEEEKETPLLYHSEKLAIAFGLLHT 550

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            PG  +RI+KNLR+C DCH   K +SR+  R I+VRDR RFH F+ G CSC DYW
Sbjct: 551 RPGDTMRITKNLRVCRDCHEATKFVSRVFERQIVVRDRNRFHHFKDGQCSCKDYW 605



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 12/161 (7%)

Query: 88  KCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLG 147
           K G    A+ +FD +   ++  WNAM+SG        DA  +F +M    V  +      
Sbjct: 177 KLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMRARGVDGNVFVAAT 236

Query: 148 LLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME 207
            + AC+  G +  GR+    +  +  IQ   +   A+VD+  + G +EEA+ +  ++ + 
Sbjct: 237 AVVACTGAGALARGREVHRWV-EQSGIQMDEKLATAVVDMYCKCGCVEEAWRVFEALPLA 295

Query: 208 PD-VVVWRALLS----------ACRTFKRLELGEVAIVNIS 237
              +  W  ++           A + F R+E   VA  +++
Sbjct: 296 AKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPDDVT 336


>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
 gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 586

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 178/417 (42%), Positives = 257/417 (61%), Gaps = 8/417 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++++VSW++M+   VR   F EAL  F  M+  +  PD     SV+  CA LGA+   
Sbjct: 171 MPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERG 230

Query: 61  YWVHNLIIEKKI---ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
            WVH  +          N +L  AL+DMY KCG ++ A +VFD V R DV +WNAMI G+
Sbjct: 231 RWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGL 290

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           A++G    A  +F +M     +P+  TF+ +L AC+H G V+EG++ F  M+  Y I+PQ
Sbjct: 291 AMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQD-YGIKPQ 349

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IV 234
            EHYG + DLLGRAG++EEA  L+  M MEP    W AL+S+C+    + +GE     ++
Sbjct: 350 REHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGKRLI 409

Query: 235 NISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294
            +    GG YV+L N+Y    RW+ A  +R++M+ +G +K  G S++EL G++H+F +GD
Sbjct: 410 ELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHEFISGD 469

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEG-NLYHHSEKLALAYGIL 353
             HP  + I  +L  + +R +  G++  T  V+MD+ +EE +G  L +HSE+LALA+GIL
Sbjct: 470 TRHPLTRKIYALLEDIERRLQLIGYVKDTSQVIMDMDDEEDKGIALSYHSERLALAFGIL 529

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
               G  IRI KNLR+C DCH   K++S+L  R IIVRDR RFH F  G+CSC DYW
Sbjct: 530 NIPQGVPIRIVKNLRVCRDCHVHSKLVSKLYEREIIVRDRHRFHVFRDGVCSCNDYW 586



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 108/240 (45%), Gaps = 16/240 (6%)

Query: 74  LNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM 133
           L+ +    ++  Y K G +  A+EVF  +   ++  W+AM+      G   +A  +F +M
Sbjct: 143 LDVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRM 202

Query: 134 EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR--SRYSIQPQLEHYGAMVDLLGRA 191
                 PD +  + +L AC+H G VE GR    ++   S    +  L    A+VD+  + 
Sbjct: 203 MREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKC 262

Query: 192 GHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMY 251
           G +E+A+ +   +    DVV+W A++           GE A+    R++   ++   + +
Sbjct: 263 GCMEDAWQVFDGVHRR-DVVLWNAMIGG---LAMNGYGERALELFRRMLQKGFMPNESTF 318

Query: 252 -------CYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAID 304
                   +  R D  + V + M+  G+ K Q + +  LA ++   +AG+    EA  +D
Sbjct: 319 IAVLCACTHTGRVDEGKRVFKSMQDYGI-KPQREHYGCLADLLG--RAGNVEEAEALLLD 375


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  358 bits (918), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 178/413 (43%), Positives = 250/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP + +++W  MI G  +N   +E L+ F +M    +EP  + +A  I  C+ LG+L++ 
Sbjct: 370 MPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNG 429

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ II+   + +  +  ALI MYS+CG ++ A  VF T+   D   WNAMI+ +A H
Sbjct: 430 QQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQH 489

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  ++ KM   ++LPD ITFL +L+ACSH GLV+EGR YFD MR  Y I P+ +H
Sbjct: 490 GHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDH 549

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  ++DLL RAG   EA  +  SM  EP   +W ALL+ C     +ELG  A   +  LM
Sbjct: 550 YSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELM 609

Query: 241 ---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y+ LSNMY  L +WD    VR++M+++GV+K  G SW+E+  ++H F   D  H
Sbjct: 610 PQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVH 669

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE  A+ + L  L+   +  G++P T+ VL D+  E+KE  L  HSEKLA+ YGI+K   
Sbjct: 670 PEVHAVYRYLEQLVHEMRKLGYVPDTKFVLHDMESEQKEYALSTHSEKLAVVYGIMKLPL 729

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLRIC DCH+  K IS+++ R IIVRDR RFH F  G CSC +YW
Sbjct: 730 GATIRVFKNLRICGDCHNAFKYISKVVDREIIVRDRKRFHHFRNGECSCSNYW 782



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 122/239 (51%), Gaps = 15/239 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D   V+WN+MI G+V    ++EA    R M S  ++ D++T+ SVI   +  G  N  
Sbjct: 234 MTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIG 293

Query: 61  YWVHNLIIEKKIELN--FILSA--ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
             VH  ++   ++ +  F+LS   ALI +Y++CGK+  A+ VFD +   D+  WNA++SG
Sbjct: 294 RQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSG 353

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
                   +A++IF +M + ++L    T+  +++  +  G  EEG K F+ M+    ++P
Sbjct: 354 CVNARRIEEANSIFREMPVRSLL----TWTVMISGLAQNGFGEEGLKLFNQMKLE-GLEP 408

Query: 177 QLEHYG---AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA 232
               Y    A   +LG   + ++ +  I  +  +  + V  AL++    + R  L E A
Sbjct: 409 CDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALIT---MYSRCGLVEAA 464



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 118/281 (41%), Gaps = 63/281 (22%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALN-- 58
           M  +D VS+N+MI  F  +     AL+ F +M      PD FTF+SV      LGAL+  
Sbjct: 90  MSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSV------LGALSLI 143

Query: 59  -----HAYWVHNLIIE-KKIELNFILSAALIDMYSKCGK---------IQMAKEVFDTVQ 103
                H   +H  + +   + +  +L+A L+  Y  C           +  A+++FD   
Sbjct: 144 ADEETHCQQLHCEVFKWGALSVPSVLNA-LMSCYVSCASSPLVNSCVLMAAARKLFDEAP 202

Query: 104 -----------------RNDVSV----------------WNAMISGVAIHGLAADASAIF 130
                            RND  V                WNAMISG    G   +A  + 
Sbjct: 203 PGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLL 262

Query: 131 TKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ----LEHYGAMVD 186
            +M    +  D  T+  +++A S+ GL   GR+   ++  R  +QP     L    A++ 
Sbjct: 263 RRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVL-RTVVQPSGHFVLSVNNALIT 321

Query: 187 LLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
           L  R G + EA  +   M ++ D+V W A+LS C   +R+E
Sbjct: 322 LYTRCGKLVEARRVFDKMPVK-DLVSWNAILSGCVNARRIE 361


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  358 bits (918), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 175/413 (42%), Positives = 262/413 (63%), Gaps = 7/413 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVVSW +MI G++R   F  AL  FREM  S V+PD+FT  S++  CA LGAL   
Sbjct: 242 MKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELG 301

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WV   I +   + +  +  AL+DMY KCG ++ AK+VF  + + D   W  MI G+AI+
Sbjct: 302 EWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAIN 361

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A A+F+ M   +V PD IT++G+L AC    +V++G+ +F +M  ++ I+P + H
Sbjct: 362 GHGEEALAMFSNMIEASVTPDEITYIGVLCAC----MVDKGKSFFTNMTMQHGIKPTVTH 417

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG MVDLLG  G +EEA  +I +M ++P+ +VW + L ACR  K ++L ++A   I  L 
Sbjct: 418 YGCMVDLLGCVGCLEEALEVIVNMPVKPNSIVWGSPLGACRVHKNVQLADMAAKQILELE 477

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              G  YVLL N+Y   K+W+    VR++M ++G++K+ G S +EL G +++F AGD+SH
Sbjct: 478 PENGAVYVLLCNIYAASKKWENLCQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSH 537

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+++ I   L +++Q     G+ P T  V +D+ EE+KE  LY HSEKLA+AY ++ + P
Sbjct: 538 PQSKEIYAKLENMMQGLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGP 597

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KNLR+C DCH   K++S+   R +IV+D+ RFH F  G CSC ++W
Sbjct: 598 GVTIRIVKNLRMCVDCHHMAKLVSQAYNRELIVKDKTRFHHFRHGSCSCNNFW 650



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 113/258 (43%), Gaps = 50/258 (19%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P   +  WN+MI G+ + +  +  +  +  ML+S ++PD+FTF   + G  R  AL H 
Sbjct: 67  IPHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHG 126

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             + N  ++   + N  +  A I M+S CG + +A +VFD     +V  WN M+SG    
Sbjct: 127 KELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSG---- 182

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSH-------------------------C 155
                    + +++ F +       L +L+ACS                          C
Sbjct: 183 ---------YNRVKQFKI----SKMLLVLSACSKLKDLEWGKHIFKYINGGIVEHMFAAC 229

Query: 156 GLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM---EPDVVV 212
           G ++E +  FD+M++R  +      + AM+D   R  H   A  L   M M   +PD   
Sbjct: 230 GEMDEAQGVFDNMKTRDVVS-----WTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFT 284

Query: 213 WRALLSACRTFKRLELGE 230
             ++L AC     LELGE
Sbjct: 285 MVSILIACALLGALELGE 302



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 84/195 (43%), Gaps = 14/195 (7%)

Query: 90  GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
           G +  A +VFDT+    + +WN MI G +      +  +++  M   N+ PD  TF   L
Sbjct: 55  GNMNYAHQVFDTIPHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSL 114

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
              +    ++ G++  +H   ++     L    A + +    G ++ A+ +   M    +
Sbjct: 115 KGFTRDMALQHGKELLNH-AVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVF-DMGDACE 172

Query: 210 VVVWRALLSACRTFKRLELGEVAIV-----NISRLMGGDYV-------LLSNMYCYLKRW 257
           VV W  +LS     K+ ++ ++ +V      +  L  G ++       ++ +M+      
Sbjct: 173 VVTWNIMLSGYNRVKQFKISKMLLVLSACSKLKDLEWGKHIFKYINGGIVEHMFAACGEM 232

Query: 258 DTAENVREIMKKKGV 272
           D A+ V + MK + V
Sbjct: 233 DEAQGVFDNMKTRDV 247


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  357 bits (917), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 177/414 (42%), Positives = 258/414 (62%), Gaps = 5/414 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D+ SWN++I GF + ++  EAL  F+ M     +P++ +    +  CA+LG     
Sbjct: 166 MVKRDIASWNALISGFAQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEG 225

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
             +H  I  ++ ++N  +   +IDMY+KCG +  A  VF+++  R D+  WN MI   A+
Sbjct: 226 EKIHGYIKVERFDMNAQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAM 285

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG    A  +F KM+   V PD +++L +L AC+H GLVEEG + F+ M +   ++P ++
Sbjct: 286 HGEGCKALELFEKMDQSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMEN-CGVKPNVK 344

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HYG++VDLLGRAG + EAY ++ SM   PD+V+W+ LL A RT + +E+ E     +V +
Sbjct: 345 HYGSVVDLLGRAGRLHEAYDIVNSMPTVPDIVLWQTLLGASRTHRNVEIAETVSRKLVEM 404

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                GD+VLLSN+Y   +RW     VRE MK + V+K  G S++E  GVIH+F   D+S
Sbjct: 405 GSNHCGDFVLLSNVYAARERWADVGRVREAMKNRDVKKVPGLSYIEGNGVIHKFYNADKS 464

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           H   + I   L  +  R K  G++  T  VL D+ EE+KE  L HHSEKLA+A+G++ TS
Sbjct: 465 HESWREIYAKLDEIRFRVKEYGYVAETSFVLHDIGEEDKENVLGHHSEKLAVAFGLISTS 524

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            GT I++ KNLRIC DCH  IK+IS++  R IIVRDR+RFHRF+ G CSC DYW
Sbjct: 525 EGTPIQVIKNLRICGDCHFVIKLISKIYDREIIVRDRVRFHRFKEGFCSCRDYW 578



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 121/212 (57%), Gaps = 3/212 (1%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           WN++I GF+++     A  +++ M+S   + D  T + V+  CAR+ A   +  +H  I+
Sbjct: 73  WNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLARLESIQIHTHIV 132

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
            K    + +L   L+D+Y+K G+I  A++VFD + + D++ WNA+ISG A      +A +
Sbjct: 133 RKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALS 192

Query: 129 IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR-SRYSIQPQLEHYGAMVDL 187
           +F +ME+    P+ I+ LG L+AC+  G  +EG K   +++  R+ +  Q+     ++D+
Sbjct: 193 LFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQV--CNVVIDM 250

Query: 188 LGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             + G +++AY +  SM+   D+V W  ++ A
Sbjct: 251 YAKCGFVDKAYLVFESMSCRKDIVTWNTMIMA 282


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  357 bits (917), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 176/413 (42%), Positives = 247/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++V +W  MI G  ++    EA   F +ML   + PD  T+ S++  CA  GAL   
Sbjct: 496 MVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWV 555

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+  +   +  +  +  AL+ MY+KCG +  A+ VFD +   DV  W  MI G+A H
Sbjct: 556 KEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQH 615

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA  +F KM++    P+  +F+ +L+ACSH GLV+EGR+ F  +   Y I+P +EH
Sbjct: 616 GRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEH 675

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI---VNIS 237
           Y  MVDLLGRAG +EEA   I +M +EP    W ALL AC T+  LE+ E A    + + 
Sbjct: 676 YTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLK 735

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 YVLLSN+Y     W+    VR +M+++G+RK  G+SW+E+   IH F  GD SH
Sbjct: 736 PKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIHSFVVGDTSH 795

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE++ I   L  LI+R K+EG++P T LVL +  +E KE  L  HSEKLA+ YG++ T  
Sbjct: 796 PESKEIYAKLKDLIKRLKAEGYVPDTRLVLRNTDQEYKEQALCSHSEKLAIVYGLMHTPY 855

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IR+ KNLR+C DCH+  K IS++  R I+ RD  RFH F+ G+CSCGDYW
Sbjct: 856 RNPIRVYKNLRVCSDCHTATKFISKVTGREIVARDAKRFHHFKDGVCSCGDYW 908



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 154/364 (42%), Gaps = 66/364 (18%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D+DV+SWN+MIGG  +N    EA   F +M      PD  T+ S++      GA    
Sbjct: 295 MCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWV 354

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   +E  +  +  + +A + MY +CG I  A+ +FD +   +V+ WNAMI GVA  
Sbjct: 355 KEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQ 414

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTA----------------------------- 151
               +A ++F +M      PD+ TF+ +L+A                             
Sbjct: 415 KCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGN 474

Query: 152 -----CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM 206
                 + CG     ++ FD M     ++  +  +  M+  L + G   EA+ L   M  
Sbjct: 475 ALVHMYAKCGNTMYAKQVFDDM-----VERNVTTWTVMISGLAQHGCGHEAFSLFLQMLR 529

Query: 207 E---PDVVVWRALLSACRTFKRLE-LGEV--AIVN---ISRLMGGDYVLLSNMYCYLKRW 257
           E   PD   + ++LSAC +   LE + EV    VN   +S L  G+   L +MY      
Sbjct: 530 EGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGN--ALVHMYAKCGSV 587

Query: 258 DTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSE 317
           D A  V + M ++ V      SW  + G + Q   G        A+D     L  + K E
Sbjct: 588 DDARRVFDDMLERDVY-----SWTVMIGGLAQHGRG------LDALD-----LFVKMKLE 631

Query: 318 GFLP 321
           GF P
Sbjct: 632 GFKP 635



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 160/386 (41%), Gaps = 73/386 (18%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++V+SW  MIGG     R  EA   F +M      P+ +T+ S++   A  GAL   
Sbjct: 91  MVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWV 150

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+  +   + L+  +  AL+ MY+K G I  A+ VFD +   D+  W  MI G+A H
Sbjct: 151 KEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQH 210

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTAC---------------------------- 152
           G   +A ++F +ME    LP+  T+L +L A                             
Sbjct: 211 GRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLR 270

Query: 153 ---------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
                    + CG +++ R  FD M  R  I      + AM+  L + G   EA+ +   
Sbjct: 271 VGNALIHMYAKCGSIDDARLVFDGMCDRDVIS-----WNAMIGGLAQNGCGHEAFTIFLK 325

Query: 204 MTME---PDVVVWRALLS------ACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYL 254
           M  E   PD   + +LL+      A    K +    V +  +S L  G   +  +MY   
Sbjct: 326 MQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFV--HMYI-- 381

Query: 255 KRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRT 314
            R  + ++ + I  K  VR     +W  + G + Q K G  +            SL  + 
Sbjct: 382 -RCGSIDDAQLIFDKLAVRNV--TTWNAMIGGVAQQKCGREAL-----------SLFLQM 427

Query: 315 KSEGFLP-ATELVLM---DVSEEEKE 336
           + EGF P AT  V +   +V EE  E
Sbjct: 428 RREGFFPDATTFVNILSANVGEEALE 453



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 134/287 (46%), Gaps = 18/287 (6%)

Query: 12  MIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKK 71
           MIGG+      ++A++ + +M     +P++ T+ S++  C    +L     +H  II+  
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 72  IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFT 131
            + +  +  AL++MY KCG I  A+ +FD +   +V  W  MI G+A +G   +A   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 132 KMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRA 191
           +M+    +P+S T++ +L A +  G +E  ++   H  +   +   L    A+V +  ++
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNA-GLALDLRVGNALVHMYAKS 179

Query: 192 GHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMY 251
           G I++A  +   M +E D+  W  ++       R +      + + R  GG    L N+ 
Sbjct: 180 GSIDDARVVFDGM-VERDIFSWTVMIGGLAQHGRGQEAFSLFLQMER--GG---CLPNLT 233

Query: 252 CYLKRWD----TAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294
            YL   +    T+    E +K+  V K  GK     AG I   + G+
Sbjct: 234 TYLSILNASAITSTGALEWVKE--VHKHAGK-----AGFISDLRVGN 273


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  357 bits (917), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 179/413 (43%), Positives = 245/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D VSW ++I G+ +N  ++EAL  F EM       ++ TF+  +  CA + AL   
Sbjct: 351 MPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELG 410

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +++   E    +  AL+ MY KCG    A +VF+ ++  DV  WN MI+G A H
Sbjct: 411 KQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARH 470

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F  M+   V PD IT +G+L+ACSH GL++ G +YF  M   Y+++P  +H
Sbjct: 471 GFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKH 530

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  M+DLLGRAG +EEA  L+ +M  +P    W ALL A R     ELGE A   +  + 
Sbjct: 531 YTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKME 590

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    RW     +R  M++ GV+K  G SW+E+   IH F  GD  H
Sbjct: 591 PQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHTFSVGDCFH 650

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE   I   L  L  + + EG++ +T+LVL DV EEEKE  L +HSEKLA+A+GIL    
Sbjct: 651 PEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPA 710

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH+ IK IS+++ R+II+RD  RFH F  G+CSCGDYW
Sbjct: 711 GRPIRVMKNLRVCQDCHNAIKHISKIVGRLIILRDSHRFHHFSEGICSCGDYW 763



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 39/245 (15%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KDVVSWN+M+ G+ +N   DEA    RE+ +     +  ++  ++      G L  A
Sbjct: 134 MPKKDVVSWNAMLSGYAQNGFVDEA----REVFNKMPHRNSISWNGLLAAYVHNGRLKEA 189

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                 + E +     I    L+  Y K   +  A+++FD +   DV  WN MISG A  
Sbjct: 190 ----RRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQV 245

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ----- 175
           G  + A  +F +    + + D  T+  +++     G+V+E RKYFD M  +  I      
Sbjct: 246 GDLSQAKRLFNE----SPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAML 301

Query: 176 ---------------------PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
                                  +  +  M+   G+ G I +A  L   M  + D V W 
Sbjct: 302 AGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMP-QRDCVSWA 360

Query: 215 ALLSA 219
           A++S 
Sbjct: 361 AIISG 365



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 20/218 (9%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA-Y 61
           D D+V+WN  I   +RN   D ALR F  M      P +   +SV Y     G L +A +
Sbjct: 43  DPDIVTWNKAISSHMRNGHCDSALRVFNSM------PRR---SSVSYNAMISGYLRNAKF 93

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +   + +K  E +      ++  Y +  ++  A ++FD + + DV  WNAM+SG A +G
Sbjct: 94  SLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNG 153

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              +A  +F KM   N    SI++ GLL A  H G ++E R+ F+   +      +L  +
Sbjct: 154 FVDEAREVFNKMPHRN----SISWNGLLAAYVHNGRLKEARRLFESQSNW-----ELISW 204

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             ++    +   + +A  L   M +  DV+ W  ++S 
Sbjct: 205 NCLMGGYVKRNMLGDARQLFDRMPVR-DVISWNTMISG 241



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 116/261 (44%), Gaps = 36/261 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DV+SWN+MI G+ +     +A R F E   S +  D FT+ +++ G  + G ++ A
Sbjct: 227 MPVRDVISWNTMISGYAQVGDLSQAKRLFNE---SPIR-DVFTWTAMVSGYVQNGMVDEA 282

Query: 61  Y-WVHNLIIEKKIELNFILSA--------------------------ALIDMYSKCGKIQ 93
             +   + ++ +I  N +L+                            +I  Y + G I 
Sbjct: 283 RKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIA 342

Query: 94  MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
            A+++FD + + D   W A+ISG A +G   +A  +F +M+      +  TF   L+ C+
Sbjct: 343 QARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCA 402

Query: 154 HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVW 213
               +E G++    +  +   +       A++ +  + G  +EA  +   +  E DVV W
Sbjct: 403 DIAALELGKQVHGQV-VKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIE-EKDVVSW 460

Query: 214 RALLSACRTFKRLELGEVAIV 234
             +++    + R   G  A+V
Sbjct: 461 NTMIAG---YARHGFGRQALV 478


>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
 gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
          Length = 565

 Score =  357 bits (917), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 176/417 (42%), Positives = 265/417 (63%), Gaps = 11/417 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++VVSWN MI  + +   +D  L  F EM+    EPD +T  SVI  C  LG+L+   WV
Sbjct: 150 RNVVSWNVMIDSYAKVGDYDIVLIMFCEMMKV-YEPDCYTMQSVIRACGGLGSLSLGMWV 208

Query: 64  HNLII---EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           H  ++   +K +  + +++  L+DMY KCG +++AK+VF+ +   DVS WN++I G A+H
Sbjct: 209 HAFVLKKCDKNVVCDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAVH 268

Query: 121 GLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           G A  A   F +M ++  ++P+SITF+G+L+AC+H G+V+EG  YF+ M   Y+++P L 
Sbjct: 269 GKAKAALDYFVRMVKVEKIVPNSITFVGVLSACNHSGMVDEGLMYFEMMTKEYNVEPSLV 328

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC-RTFKRLELGEVAIVNI-- 236
           HYG +VDL  RAGHI+EA  +++ M ++PD V+WR+LL AC +    +EL E     I  
Sbjct: 329 HYGCLVDLYARAGHIQEALNVVSEMPIKPDAVIWRSLLDACYKQHASVELSEEMAKQIFE 388

Query: 237 --SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294
               + GG YVLLS +Y    RW+    +R++M  KGV K  G S +E+ G  H+F AGD
Sbjct: 389 SNGSVCGGAYVLLSKVYASASRWNDVGLLRKLMNDKGVSKKPGCSLIEINGAAHEFFAGD 448

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLP-ATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
            +HP+++ I K +  + ++ +S G+LP  +   L+D   E K+  +  HSE+LA+A+G+L
Sbjct: 449 TNHPQSKDIYKFMNEIQEKLESVGYLPDYSGAPLIDEINEGKQNTMRLHSERLAIAFGLL 508

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            + P   IR+ KNLR+C+DCH   K+ISR+    IIVRDR+RFH F+ G CSC DYW
Sbjct: 509 NSKPSMPIRVFKNLRVCNDCHKVTKLISRIYNVEIIVRDRVRFHHFKDGSCSCMDYW 565



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 11/218 (5%)

Query: 8   SWNSMIGGFVRNARFDE-ALRFFREMLS---SKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +WN +I  + ++    + A+  ++ +++   +++ PDK T+  V+  CA L +L     V
Sbjct: 48  TWNILIQSYSKSTLHKQKAILLYKAIITEQENELFPDKHTYPFVLKACAYLFSLFEGKQV 107

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ--RNDVSVWNAMISGVAIHG 121
           H  +++   EL+  +  +LI  Y+ CG ++ A++VFD +   RN VS WN MI   A  G
Sbjct: 108 HAHVLKLGFELDTYICNSLIHFYASCGYLETARKVFDRMCEWRNVVS-WNVMIDSYAKVG 166

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR--KYFDHMRSRYSIQPQLE 179
                  +F +M M    PD  T   ++ AC   G +  G     F   +   ++   + 
Sbjct: 167 DYDIVLIMFCEM-MKVYEPDCYTMQSVIRACGGLGSLSLGMWVHAFVLKKCDKNVVCDVL 225

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
               +VD+  + G +E A  +   M+   DV  W +++
Sbjct: 226 VNTCLVDMYCKCGSLEIAKQVFEGMSYR-DVSSWNSII 262



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           M  +DV SWNS+I GF  + +   AL +F  M+   K+ P+  TF  V+  C   G ++ 
Sbjct: 250 MSYRDVSSWNSIILGFAVHGKAKAALDYFVRMVKVEKIVPNSITFVGVLSACNHSGMVDE 309

Query: 60  AYWVHNLII-EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISG 116
                 ++  E  +E + +    L+D+Y++ G IQ A  V   +  + D  +W +++  
Sbjct: 310 GLMYFEMMTKEYNVEPSLVHYGCLVDLYARAGHIQEALNVVSEMPIKPDAVIWRSLLDA 368


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  357 bits (917), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 181/415 (43%), Positives = 256/415 (61%), Gaps = 7/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVVSW++MIG +V N   +EA   F  M  + VEPD  T+ +++  C  LGAL+  
Sbjct: 425 MSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLG 484

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             ++   I+  +  +  +  ALI+M  K G I+ A+ +F+ + + DV  WN MI G ++H
Sbjct: 485 MEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLH 544

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +A  +F +M      P+S+TF+G+L+ACS  G VEEGR++F ++     I P +E 
Sbjct: 545 GNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMEL 604

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG MVDLLGRAG ++EA  LI  M ++P+  +W  LL+ACR +  L++ E A      LM
Sbjct: 605 YGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERC--LM 662

Query: 241 -----GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
                G  YV LS+MY     W+    VR++M+ +GVRK QG +W+E+ G +H F   DR
Sbjct: 663 SEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDR 722

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SHP+A  I   L  L+   K EG++P T+ VL +V E+EKE  + +HSEKLA+AYG+L  
Sbjct: 723 SHPQAGEIYAELARLMTAIKREGYIPVTQNVLHNVGEQEKEEAISYHSEKLAIAYGVLSL 782

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             G  IRI KNLR+C DCHS  K IS++  R II RD  RFH F+ G+CSCGDYW
Sbjct: 783 PSGAPIRIFKNLRVCGDCHSASKFISKVTGREIIARDASRFHHFKNGVCSCGDYW 837



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 116/219 (52%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVVSW  MI G+  N+  ++A   F  M    ++PD+ T+  +I  CA    L+ A
Sbjct: 324 MKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLA 383

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ ++      + ++  AL+ MY+KCG I+ A++VFD + R DV  W+AMI     +
Sbjct: 384 REIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVEN 443

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A   F  M+  NV PD +T++ LL AC H G ++ G + +     +  +   +  
Sbjct: 444 GCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQA-IKADLVSHIPV 502

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++++  + G IE A  +  +M ++ DVV W  ++  
Sbjct: 503 GNALINMNVKHGSIERARYIFENM-VQRDVVTWNVMIGG 540



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 142/336 (42%), Gaps = 52/336 (15%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K VV+WN++I G+ +     EA   FR+M+   +EP   TF  V+  C+    L     
Sbjct: 124 NKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKE 183

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            H  +I+     +F +  AL+ MY K G +  A++VFD + + DVS +N MI G A  G 
Sbjct: 184 FHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGD 243

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSH---------------------------- 154
              A  +F +M+     P+ I+FL +L  CS                             
Sbjct: 244 GEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATA 303

Query: 155 -------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT-- 205
                  CG +E  R+ FD M+ R  +      +  M+       +IE+A+GL  +M   
Sbjct: 304 LIRMYMGCGSIEGARRVFDKMKVRDVVS-----WTVMIRGYAENSNIEDAFGLFATMQEE 358

Query: 206 -MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVL----LSNMYCYLKRWDTA 260
            ++PD + +  +++AC +   L L       + R   G  +L    L +MY        A
Sbjct: 359 GIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDA 418

Query: 261 ENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
             V + M ++ V      SW  + G   +   G+ +
Sbjct: 419 RQVFDAMSRRDV-----VSWSAMIGAYVENGCGEEA 449



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 96/229 (41%), Gaps = 43/229 (18%)

Query: 40  DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF 99
           D  T+  +   C  L        V + II+   +LN      LI ++S CG +  A++ F
Sbjct: 60  DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTF 119

Query: 100 DTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS------ 153
           D+V+   V  WNA+I+G A  G   +A A+F +M    + P  ITFL +L ACS      
Sbjct: 120 DSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLK 179

Query: 154 -----HCGLVEEG------------------------RKYFDHMRSRYSIQPQLEHYGAM 184
                H  +++ G                        R+ FD +  R      +  +  M
Sbjct: 180 LGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKR-----DVSTFNVM 234

Query: 185 VDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELGE 230
           +    ++G  E+A+ L   M  E   P+ + + ++L  C T + L  G+
Sbjct: 235 IGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGK 283


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  357 bits (916), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 176/412 (42%), Positives = 256/412 (62%), Gaps = 3/412 (0%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P   +VSW+SM+ G+V N ++++ ++ FR M+   +  D  T A++I  CA  G L    
Sbjct: 344 PKARMVSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVATIISACANAGILEFGK 403

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H  I +  + ++  + ++LIDMYSK G +  A  +F+ ++  +V +W +MISG A+HG
Sbjct: 404 QIHAYIQKIGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIKEPNVVLWTSMISGCALHG 463

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              +A ++F  M    ++P+ +TF+G+L ACSH GL+EEG +YF  M+  Y I P++EHY
Sbjct: 464 QGKEAISLFEGMLNLGIIPNEVTFVGVLNACSHVGLIEEGCRYFRMMKDTYHINPEVEHY 523

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
            +MV+L GRAGH+ EA   I   ++     VWR+ LS+CR  K   +G+     + +   
Sbjct: 524 TSMVNLYGRAGHLIEAKNFIFENSISHFTSVWRSFLSSCRLHKNFNMGKSVSEMLLQSAP 583

Query: 242 GD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
            D   Y+LLSNM     +WD A  VR +M ++GV+K  G+SW++L   IH F  GDRSHP
Sbjct: 584 SDPDAYILLSNMCSSNHQWDEAAIVRSLMYQRGVKKQPGQSWVQLKDQIHSFTVGDRSHP 643

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           + + I   L SLI R K  G+    +LV+ DV EE+ E  + HHSEKLAL + I+ TSP 
Sbjct: 644 QDKEIYSYLDSLIGRLKEIGYSLDAKLVMQDVEEEQGEVLISHHSEKLALVFSIINTSPR 703

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T IRI KNLRIC+DCH++ K  S+LL R IIVRD  RFH F+   CSCG+YW
Sbjct: 704 TPIRIMKNLRICNDCHNFFKYASQLLEREIIVRDTHRFHHFKQSSCSCGEYW 755



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 116/238 (48%), Gaps = 22/238 (9%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            P+KDVVSWN++I G ++      AL     M++   E    TF+  +   + L  +   
Sbjct: 226 FPNKDVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVG 285

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN--------------- 105
             +H  ++   +  +  + ++L++MY KCG++  A  +   V  N               
Sbjct: 286 RQLHGRVLTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPK 345

Query: 106 -DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKY 164
             +  W++M+SG   +G   D    F  M    ++ D  T   +++AC++ G++E G++ 
Sbjct: 346 ARMVSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVATIISACANAGILEFGKQI 405

Query: 165 FDHMRSRYSIQPQLEHY--GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
             +++    I  +++ Y   +++D+  ++G +++A  +I     EP+VV+W +++S C
Sbjct: 406 HAYIQ---KIGLRIDAYVGSSLIDMYSKSGSLDDAL-MIFEQIKEPNVVLWTSMISGC 459



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%)

Query: 4   KDVVSWNSMIGGFVRNARFDE-ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           K+  +W  +I GF R A   E     FREM +    P+++T +SV+  C+R   +     
Sbjct: 96  KNTQTWTILISGFARAAGSSELVFSLFREMQADGACPNQYTLSSVLKCCSRENNIQFGKG 155

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  I+   +  + +L  +++D+Y KC + + A+  F+ +   DV  WN MI      G 
Sbjct: 156 IHAWILRNGVGGDVVLENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREG- 214

Query: 123 AADASAIFTKMEMFNVLP--DSITFLGLLTACSHCG 156
                 +   +EMF   P  D +++  ++     CG
Sbjct: 215 -----DVEKSLEMFRNFPNKDVVSWNTIIDGLIQCG 245



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 4/152 (2%)

Query: 70  KKIELNFILSAA-LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA-IHGLAADAS 127
           KK  L  + SA  L+ +Y K   +  A ++FD +   +   W  +ISG A   G +    
Sbjct: 60  KKGSLQILNSANYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARAAGSSELVF 119

Query: 128 AIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDL 187
           ++F +M+     P+  T   +L  CS    ++ G+     +  R  +   +    +++DL
Sbjct: 120 SLFREMQADGACPNQYTLSSVLKCCSRENNIQFGKGIHAWIL-RNGVGGDVVLENSILDL 178

Query: 188 LGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +    E A      M +E DVV W  ++ A
Sbjct: 179 YLKCKEFEYAESFFELM-IEKDVVSWNIMIGA 209


>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
          Length = 637

 Score =  357 bits (916), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 174/413 (42%), Positives = 255/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D VSW+++IGG+V+    + AL  F+ M++  V+ ++    + +   A+LG L   
Sbjct: 225 MPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAAQLGLLEQG 284

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            +VH ++    + ++  L AALIDMYSKCG +  AKEVFD + R DV  WN+MI G+A H
Sbjct: 285 KFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATH 344

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  DA  +F K       P SITF+G+L ACS  GLV+EGR+YF  M  +Y I+ ++EH
Sbjct: 345 GLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEH 404

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDLL RAG ++EA  LI  M + PD V+W  +LSAC+    ++LG      ++ + 
Sbjct: 405 YGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIELD 464

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLL+++Y   K+WD    VR++M  +G  KS G S +E  G++H+F  GD +H
Sbjct: 465 PAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDMNH 524

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            ++  I  +L ++ +R    G++P    VL D+ +EEK   +  HSE+LA+AYG +    
Sbjct: 525 KDSARIYNMLCTINRRLAEAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVVEA 584

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G+ IRI KNL +C DCH + KM++++  R I+VRD  RFH  + G CSC DYW
Sbjct: 585 GSPIRIVKNLSVCGDCHEFSKMVTKVFGREIVVRDGSRFHHMKDGKCSCHDYW 637



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 2/142 (1%)

Query: 81  ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP 140
           A++  Y + G + +A+EVFD +   D   W+ +I G    G    A  +F  M    V  
Sbjct: 204 AVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKA 263

Query: 141 DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL 200
           +    +  L+A +  GL+E+G K+   +  R  +   +    A++D+  + G +  A  +
Sbjct: 264 NEAAIVTALSAAAQLGLLEQG-KFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEV 322

Query: 201 ITSMTMEPDVVVWRALLSACRT 222
             +M    DV  W +++    T
Sbjct: 323 FDAMPRR-DVFAWNSMICGLAT 343


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  357 bits (916), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 184/445 (41%), Positives = 271/445 (60%), Gaps = 36/445 (8%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KDV+ W+ MI  + ++ +  EA+  F +M  + V P++FTFASV+  CA +  LN  
Sbjct: 301 IPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLG 360

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF-DTVQRNDVSVWNAMISGVAI 119
             +H  +I+  +  +  +S AL+D+Y+KCG+++ + E+F ++  RNDV+ WN +I G   
Sbjct: 361 NQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVT-WNTVIVGHVQ 419

Query: 120 HGLAADASAIFTKM-------------------------------EMFNVLPDSITFLGL 148
            G    A  +F  M                                   V PD +TF+G+
Sbjct: 420 LGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPDKLTFVGV 479

Query: 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
           L+AC++ GL+++G+ YF  M   + I+P +EHY  MV LLGR GH+++A  LI  +  +P
Sbjct: 480 LSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQP 539

Query: 209 DVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD---YVLLSNMYCYLKRWDTAENVRE 265
            V+VWRALL AC     +ELG ++   +  +   D   +VLLSNMY   KRWD   +VR+
Sbjct: 540 SVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRK 599

Query: 266 IMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATEL 325
            MK+KGV+K  G SW+E  G +H F  GD SHPE + I+ +L  L  +TK  G++P   +
Sbjct: 600 NMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNV 659

Query: 326 VLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLR 385
           VL+DV +EEKE  L+ HSE+LAL++GI++T  G+ IRI KNLRIC DCH+ IK IS++++
Sbjct: 660 VLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQ 719

Query: 386 RVIIVRDRIRFHRFEGGLCSCGDYW 410
           R I+VRD  RFH F+ GLCSCGDYW
Sbjct: 720 REIVVRDINRFHHFQEGLCSCGDYW 744



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 106/214 (49%), Gaps = 2/214 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD+VSW  M+  F  N  F EAL+ F +M     +P+ FTFASV   C  L A +    V
Sbjct: 203 KDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSV 262

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   ++ + EL+  +  AL+D+Y+K G I  A+  F+ + + DV  W+ MI+  A    +
Sbjct: 263 HGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQS 322

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F +M    VLP+  TF  +L AC+    +  G +   H+  +  +   +    A
Sbjct: 323 KEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHV-IKIGLHSDVFVSNA 381

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           ++D+  + G +E +  L        D V W  ++
Sbjct: 382 LMDVYAKCGRMENSMELFAESPHRND-VTWNTVI 414



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 112/224 (50%), Gaps = 14/224 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVI-----YGCARLG 55
           MP+++ +S+ ++I G+  + RF EA+  F  +     E + F F +++       C  LG
Sbjct: 99  MPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDCGELG 158

Query: 56  ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
                + +H  I +   E N  +  ALID YS CG++ +A+EVFD +   D+  W  M++
Sbjct: 159 -----WGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVT 213

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD-HMRSRYSI 174
             A +    +A  +F++M M    P++ TF  +  AC      + G+      ++SRY +
Sbjct: 214 CFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYEL 273

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
              L    A++DL  ++G I++A      +  + DV+ W  +++
Sbjct: 274 --DLYVGVALLDLYTKSGDIDDARRAFEEIP-KKDVIPWSFMIA 314


>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
 gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
 gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  357 bits (916), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 183/418 (43%), Positives = 255/418 (61%), Gaps = 8/418 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM---LSSKVEPDKFTFASVIYGCARLGAL 57
           +P +D VSWN +   ++RN R  + L  F +M   +   V+PD  T    +  CA LGAL
Sbjct: 174 IPKRDTVSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGAL 233

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
           +    VH+ I E  +     LS  L+ MYS+CG +  A +VF  ++  +V  W A+ISG+
Sbjct: 234 DFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGL 293

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQP 176
           A++G   +A   F +M  F + P+  T  GLL+ACSH GLV EG  +FD MRS  + I+P
Sbjct: 294 AMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKP 353

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNI 236
            L HYG +VDLLGRA  +++AY LI SM M+PD  +WR LL ACR    +ELGE  I ++
Sbjct: 354 NLHHYGCVVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHL 413

Query: 237 SRLMG---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
             L     GDYVLL N Y  + +W+    +R +MK+K +    G S +EL G +H+F   
Sbjct: 414 IELKAEEAGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVD 473

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDV-SEEEKEGNLYHHSEKLALAYGI 352
           D SHP  + I K+L  + Q+ K  G++      L ++ SEEEK   L +HSEKLA+A+GI
Sbjct: 474 DVSHPRKEEIYKMLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGI 533

Query: 353 LKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           L T PGT IR++KNLR C DCH++ K +S +  R++IVRDR RFH F+GG CSC D+W
Sbjct: 534 LVTPPGTTIRVTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 6/214 (2%)

Query: 10  NSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           N+MI  F  +    E  R FR +  +S +  +  + +  +  C + G L     +H  I 
Sbjct: 81  NTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGLQIHGKIF 140

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
                 + +L   L+D+YS C     A +VFD + + D   WN + S    +    D   
Sbjct: 141 SDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLV 200

Query: 129 IFTKMEM---FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           +F KM+      V PD +T L  L AC++ G ++ G++  D +     +   L     +V
Sbjct: 201 LFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFI-DENGLSGALNLSNTLV 259

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            +  R G +++AY +   M  E +VV W AL+S 
Sbjct: 260 SMYSRCGSMDKAYQVFYGMR-ERNVVSWTALISG 292


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  357 bits (916), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 177/407 (43%), Positives = 253/407 (62%), Gaps = 3/407 (0%)

Query: 7    VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
            VSW+SM+ G+V+N RF++AL+ F  M+ S+VE DKFT  SV+  CA  G L     VH  
Sbjct: 602  VSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGY 661

Query: 67   IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
            I +    L+  L +++IDMY KCG +  A  +F+  +  +V +W +MISG A+HG   +A
Sbjct: 662  IQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREA 721

Query: 127  SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186
              +F  M    + P+ ++F+G+LTACSH GL+EEG KYF  MR  Y I+P  EH+  MVD
Sbjct: 722  VRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVD 781

Query: 187  LLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE---VAIVNISRLMGGD 243
            L GRAG + E    I +  +     VWR+ LS+CR  K +E+G      ++ +     G 
Sbjct: 782  LYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELEPFDAGP 841

Query: 244  YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAI 303
            Y+L S++     RW+ A  +R +M+++GV+K+  +SW++L   +H F  GDRSHP+   I
Sbjct: 842  YILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVHSFVMGDRSHPQDTKI 901

Query: 304  DKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIRI 363
               L  LI R K  G+      V+ DV +E+++  L +HSEKLA+AYGI+ T+PGT IR+
Sbjct: 902  YSYLDELIGRLKEIGYSTDVTPVMQDVEQEQRQVLLGYHSEKLAIAYGIISTAPGTPIRV 961

Query: 364  SKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             KNLR+C DCH++IK  S LL R II+RD  RFH F+ G CSC DYW
Sbjct: 962  MKNLRVCIDCHNFIKYASELLGREIIIRDIHRFHHFKHGHCSCADYW 1008



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 120/237 (50%), Gaps = 21/237 (8%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KD  SWN+MI G +RN     AL    +M+++    +K TF+  +   + L  L   
Sbjct: 480 LPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLG 539

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR-----------NDVSV 109
             +H  +++  +  +  +  +LIDMY KCG+++ A  +F  + +           +D  V
Sbjct: 540 KQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVV 599

Query: 110 ----WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYF 165
               W++M+SG   +G   DA   F+ M    V  D  T   +++AC+  G++E GR+  
Sbjct: 600 ESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVH 659

Query: 166 DHMRSRYSIQPQLEHY--GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
            +++    I   L+ +   +++D+  + G + +A+ LI +   + +VV+W +++S C
Sbjct: 660 GYIQ---KIGHGLDVFLGSSIIDMYVKCGSLNDAW-LIFNQAKDRNVVLWTSMISGC 712



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 117/314 (37%), Gaps = 90/314 (28%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGC------ARL 54
           +P  DV SW  +I GF R     + L  F +M    V P++FT + V+  C      +R+
Sbjct: 347 IPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRI 406

Query: 55  GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKC------------------------- 89
           G       +H  I+   ++L+ +L+ +++D Y KC                         
Sbjct: 407 GK-----GIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMM 461

Query: 90  ------GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM----EMFN-- 137
                 G +Q + ++F  +   D + WN MI G+  +G    A  +  KM      FN  
Sbjct: 462 SSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKL 521

Query: 138 ------VLPDSITFLG-----------------------LLTACSHCGLVEEGRKYFDHM 168
                 VL  S++ LG                       L+     CG +E+    F H+
Sbjct: 522 TFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHL 581

Query: 169 RSRYSIQPQLE----------HYGAMVDLLGRAGHIEEA---YGLITSMTMEPDVVVWRA 215
               S+    E           + +MV    + G  E+A   +  +    +E D     +
Sbjct: 582 PQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTS 641

Query: 216 LLSACRTFKRLELG 229
           ++SAC +   LELG
Sbjct: 642 VVSACASAGVLELG 655



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 44/72 (61%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
           L+++Y+K   ++ A ++F+ + + DV  W  +ISG A  GL+AD   +FTKM+   V P+
Sbjct: 327 LLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPN 386

Query: 142 SITFLGLLTACS 153
             T   +L +CS
Sbjct: 387 QFTLSIVLKSCS 398



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D++VV W SMI G   + +  EA+R F  M++  + P++ +F  V+  C+  G L     
Sbjct: 699 DRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCK 758

Query: 63  VHNLIIE-KKIELNFILSAALIDMYSKCGKIQMAKE-VFDTVQRNDVSVWNAMISGVAIH 120
              L+ E   I         ++D+Y + G++   KE + +       SVW + +S   +H
Sbjct: 759 YFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVH 818


>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  357 bits (916), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 177/414 (42%), Positives = 261/414 (63%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP + +++WNSMI G+ +N    EA+  F +M  S  EPD  TF SV+  C++LG+L+  
Sbjct: 169 MPQRSIIAWNSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLG 228

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H  I+   I +N +L+ +L++M+S+CG +  A+ VFD++   +V  W AMISG  +H
Sbjct: 229 CWLHECIVGTGIRMNVVLATSLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAMISGYGMH 288

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M+   V+P+ +T++ +L+AC+H GL+ EGR  F  M+  Y + P +EH
Sbjct: 289 GYGVEAMEVFHRMKACGVVPNRVTYVAVLSACAHAGLINEGRLVFASMKQEYGVVPGVEH 348

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDV-VVWRALLSACRTFKRLELG-EVA--IVNI 236
           +  MVD+ GR G + EAY  +  ++ E  V  VW A+L AC+  K  +LG EVA  +++ 
Sbjct: 349 HVCMVDMFGRGGLLNEAYQFVRGLSSEELVPAVWTAMLGACKMHKNFDLGVEVAENLISA 408

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVLLSNMY    R D  E+VR +M ++G++K  G S +++    + F  GD+S
Sbjct: 409 EPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVENRSYLFSMGDKS 468

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HPE   I   L  L+ R K  G+ PA E  + ++ EEE+E  L +HSEKLA+A+G++KT 
Sbjct: 469 HPETNEIYCYLDELMWRCKDAGYAPAPESAMHELEEEEREYALRYHSEKLAVAFGLMKTC 528

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  +RI KNLRIC DCHS IK IS ++ R IIVRD++RFH F  G CSC DYW
Sbjct: 529 HGVTLRIVKNLRICEDCHSAIKFISVVMNREIIVRDKLRFHHFREGSCSCSDYW 582



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 113/219 (51%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + D D   +NS+I          +A+ F+R ML S++ P  +TF SVI  CA L  L   
Sbjct: 68  VSDPDSFLFNSLIKASSNFGFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRLG 127

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ +       N  + AAL+  Y+K    ++A++VFD + +  +  WN+MISG   +
Sbjct: 128 TIVHSHVFVSGYASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQN 187

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GLA++A  +F KM      PDS TF+ +L+ACS  G ++ G  +         I+  +  
Sbjct: 188 GLASEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLG-CWLHECIVGTGIRMNVVL 246

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             ++V++  R G +  A  +  SM  E +VV W A++S 
Sbjct: 247 ATSLVNMFSRCGDVGRARAVFDSMN-EGNVVSWTAMISG 284



 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 70/186 (37%), Gaps = 43/186 (23%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
           L+ +    G I   + +F +V   D  ++N++I   +  G + DA   + +M    ++P 
Sbjct: 48  LLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKASSNFGFSLDAVFFYRRMLHSRIVPS 107

Query: 142 SITFLGLLTACSHCGLVEEG-----------------------------------RKYFD 166
           + TF  ++ AC+   L+  G                                   RK FD
Sbjct: 108 TYTFTSVIKACADLSLLRLGTIVHSHVFVSGYASNSFVQAALVTFYAKSCTPRVARKVFD 167

Query: 167 HMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM---EPDVVVWRALLSACRTF 223
            M  R  I      + +M+    + G   EA  +   M     EPD   + ++LSAC   
Sbjct: 168 EMPQRSIIA-----WNSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQL 222

Query: 224 KRLELG 229
             L+LG
Sbjct: 223 GSLDLG 228


>gi|297737119|emb|CBI26320.3| unnamed protein product [Vitis vinifera]
          Length = 522

 Score =  357 bits (915), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 172/388 (44%), Positives = 246/388 (63%), Gaps = 3/388 (0%)

Query: 26  LRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM 85
           L  F EM  S ++ ++ T  ++I  CA LGAL+   W H  +++  ++LN  +  ALIDM
Sbjct: 135 LTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTALIDM 194

Query: 86  YSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145
           YSKCG + +A ++FD +   D   +NAMI G AIHG    A  +F KM +  + PD +T 
Sbjct: 195 YSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTL 254

Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
           +  + +CSH GLVEEG   F+ M+  Y ++P+LEHYG +VDLLGRAG + EA   + +M 
Sbjct: 255 VVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMP 314

Query: 206 MEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---MGGDYVLLSNMYCYLKRWDTAEN 262
           M+P+ V+WR+LL A R    LE+GEV + ++ +L     G+YVLLSNMY  + RWD  + 
Sbjct: 315 MKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYASINRWDDVKR 374

Query: 263 VREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPA 322
           VR++MK  G+ K  G S +E+ G +H+F  GD++HP ++ I   L  + +R    G  P 
Sbjct: 375 VRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSRRLHEYGHKPR 434

Query: 323 TELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISR 382
           T  VL D+ EEEKE  L +HSE+LA+A+ ++ +     IRI KNLR+C DCH+  K+IS+
Sbjct: 435 TLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPIRIIKNLRVCGDCHTSSKLISK 494

Query: 383 LLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           +  R IIVRDR RFH F+ G CSC DYW
Sbjct: 495 IYEREIIVRDRNRFHHFKEGACSCSDYW 522



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P +D + +N+MIGGF  +    +AL  F++M    + PD  T    +  C+ +G +   
Sbjct: 211 LPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEG 270

Query: 61  YWVHNLIIE-KKIELNFILSAALIDMYSKCGKIQMAKE-VFDTVQRNDVSVWNAMISGVA 118
             V   + E   +E        L+D+  + G+++ A+E V +   + +  +W +++    
Sbjct: 271 CDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAAR 330

Query: 119 IHG 121
           +HG
Sbjct: 331 VHG 333


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  357 bits (915), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 185/412 (44%), Positives = 250/412 (60%), Gaps = 5/412 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGA-LNHAY 61
           ++VVSW ++I G+V+N R D A+  F +M   + VEP++FTF+SV+  CA   A +    
Sbjct: 359 QNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGK 418

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
             H+  I+        +S+AL+ MY+K G I+ A EVF      D+  WN+MISG A HG
Sbjct: 419 QFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHG 478

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
               +  IF +M   N+  D ITF+G+++AC+H GLV EG++YFD M   Y I P +EHY
Sbjct: 479 CGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHY 538

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
             MVDL  RAG +E+A  LI  M       +WR LL+ACR    ++LGE+A   +  L  
Sbjct: 539 SCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQP 598

Query: 242 GD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
            D   YVLLSN+Y     W     VR++M  K V+K  G SW+E+      F AGD SHP
Sbjct: 599 QDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHP 658

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           ++  I   L  L  R K  G+ P T+ VL DV EE KE  L  HSE+LA+A+G++ T PG
Sbjct: 659 QSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPG 718

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T I+I KNLR+C DCH+ IK+IS++  R I+VRD  RFH F+GG CSCGDYW
Sbjct: 719 TPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 770



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 130/269 (48%), Gaps = 41/269 (15%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K+VVSW S++ G+ +N   ++AL+ F +M    ++P+ FTFA+V+ G A  GA+     V
Sbjct: 156 KNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQV 215

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H ++I+  ++    +  ++++MYSK   +  AK VFD+++  +   WN+MI+G   +GL 
Sbjct: 216 HTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLD 275

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACS-----------HCGLVEEGRKYFDHMRSRY 172
            +A  +F +M +  V      F  ++  C+           HC +++ G  +  ++++  
Sbjct: 276 LEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKT-- 333

Query: 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA 232
                     A++    +   I++A+ L   M    +VV W A++S          G V 
Sbjct: 334 ----------ALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIIS----------GYVQ 373

Query: 233 IVNISRLMGGDYVLLSNMYCYLKRWDTAE 261
                R M        N++C ++R +  E
Sbjct: 374 NGRTDRAM--------NLFCQMRREEGVE 394



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 106/221 (47%), Gaps = 3/221 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++ VSWNSMI GFV N    EA   F  M    V+  +  FA+VI  CA +  ++ A
Sbjct: 254 MENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFA 313

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR-NDVSVWNAMISGVAI 119
             +H  +I+   + +  +  AL+  YSKC +I  A ++F  +    +V  W A+ISG   
Sbjct: 314 KQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQ 373

Query: 120 HGLAADASAIFTKMEM-FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +G    A  +F +M     V P+  TF  +L AC+      E  K F     +      L
Sbjct: 374 NGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNAL 433

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               A+V +  + G+IE A   +    ++ D+V W +++S 
Sbjct: 434 CVSSALVTMYAKRGNIESA-NEVFKRQVDRDLVSWNSMISG 473



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 101/218 (46%), Gaps = 2/218 (0%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P + +   N ++  F RN +  EAL  F  +  S    D  + + V+  C  L       
Sbjct: 53  PQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGK 112

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            VH   I+     +  +  +L+DMY K   ++  + VFD ++  +V  W ++++G   +G
Sbjct: 113 QVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNG 172

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
           L   A  +F++M++  + P+  TF  +L   +  G VE+G +    M  +  +   +   
Sbjct: 173 LNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHT-MVIKSGLDSTIFVG 231

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            +MV++  ++  + +A  +  SM    + V W ++++ 
Sbjct: 232 NSMVNMYSKSLMVSDAKAVFDSME-NRNAVSWNSMIAG 268



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+D+VSWNSMI G+ ++    ++L+ F EM S  +E D  TF  VI  C   G +N    
Sbjct: 461 DRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQR 520

Query: 63  VHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIH 120
             +L+++   I       + ++D+YS+ G ++ A ++ + +      ++W  +++   +H
Sbjct: 521 YFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVH 580


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  357 bits (915), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 173/392 (44%), Positives = 252/392 (64%), Gaps = 3/392 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  D +SWNS+I G V+N  FDE L+FF++ML +K++P+  +F+S++  CA L  L+  
Sbjct: 257 LPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLG 316

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  II  + + N  +++AL+DMY+KCG I+ A+ +FD ++  D+  W AMI G A+H
Sbjct: 317 KQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALH 376

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A DA ++F +ME+  V P+ + F+ +LTACSH GLV+E  KYF+ M   Y I P LEH
Sbjct: 377 GHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEH 436

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y A+ DLLGR G +EEAY  I+ M +EP   VW  LL+ACR  K +EL E     +  + 
Sbjct: 437 YAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVD 496

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    RW  A  +R  M+ KG++K    SW+E+   +H F AGD+SH
Sbjct: 497 PQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSH 556

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    I++ L  L+++ + EG++  T  VL DV EE+K   L  HSE+LA+ +GI+ T  
Sbjct: 557 PYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPA 616

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVII 389
           GT IR++KNLR+C DCH+  K IS+++ R I+
Sbjct: 617 GTTIRVTKNLRVCVDCHTATKFISKIVGREIV 648



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 125/239 (52%), Gaps = 14/239 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+VSWN++I G  +N   ++AL   REM ++ + PD FT +SV+   A    L   
Sbjct: 156 MPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKG 215

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   I    + +  + ++LIDMY+KC ++  +  VF  + ++D   WN++I+G   +
Sbjct: 216 KEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQN 275

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
           G+  +    F +M +  + P+ ++F  ++ AC+H   +  G++   + +RSR+     + 
Sbjct: 276 GMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIA 335

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL----------SACRTFKRLEL 228
              A+VD+  + G+I  A  +   M +  D+V W A++           A   FKR+E+
Sbjct: 336 --SALVDMYAKCGNIRTARWIFDKMELY-DMVSWTAMIMGYALHGHAYDAISLFKRMEV 391



 Score = 42.7 bits (99), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 72/142 (50%), Gaps = 8/142 (5%)

Query: 84  DMYSKCGK----IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVL 139
           D+YSK  K    +   ++VF+ + + D+  WN +ISG A +G+  DA  +  +M   ++ 
Sbjct: 134 DVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLR 193

Query: 140 PDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAY 198
           PDS T   +L   +    + +G++   + +R+ Y     +    +++D+  +   ++++ 
Sbjct: 194 PDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIG--SSLIDMYAKCTRVDDS- 250

Query: 199 GLITSMTMEPDVVVWRALLSAC 220
             +  M  + D + W ++++ C
Sbjct: 251 CRVFYMLPQHDGISWNSIIAGC 272


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  357 bits (915), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 179/410 (43%), Positives = 253/410 (61%), Gaps = 4/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K  +SWN+MI GF +N   ++A R F  M    V PD FT  SVI   A +     A W+
Sbjct: 285 KTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWI 344

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   I  +++ +  +  ALIDMYSKCG++ +A+ +FD+ +   V  WNAMI G   HG  
Sbjct: 345 HGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFG 404

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  +F +M+    LP+  TFL +L ACSH GLV+EG+KYF  M+  Y ++P +EHYG 
Sbjct: 405 QAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGT 464

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
           MVDLLGRAG ++EA+  I +M +EP + V+ A+L AC+  K +EL E +   I  +    
Sbjct: 465 MVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEE 524

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
           G  +VLL+N+Y     W     VR  M+KKG++K+ G S ++L   +H F +G  +H  A
Sbjct: 525 GVYHVLLANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHA 584

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + I   L  LI+  K  G++P T+ +  DV ++ K   L  HSEKLA+AYG+++T+PGT 
Sbjct: 585 KDIYARLAKLIEEIKDMGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTT 643

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           I+I KNLR+C+DCH+  K+IS L  R II+RD  RFH F+ G CSCGDYW
Sbjct: 644 IQIKKNLRVCNDCHNATKLISLLTGREIIMRDIQRFHHFKDGKCSCGDYW 693



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 113/244 (46%), Gaps = 15/244 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK--VEPDKFTFASVIYGCARLGALN 58
           MP +D V+WN+++ G+ RN     A+     M   +    PD  T  SV+  CA   AL+
Sbjct: 77  MPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALH 136

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGV 117
               VH   +   ++    +S A++D Y KCG ++ A+ VFD +  RN VS WNAMI G 
Sbjct: 137 ACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVS-WNAMIDGY 195

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           A +G A +A A+F +M    V     + L  L AC   G ++E R+  + +  R  +   
Sbjct: 196 ADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHE-LLVRVGLSSN 254

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL----------SACRTFKRLE 227
           +    A++    +    + A  +   +  +   + W A++           A R F R++
Sbjct: 255 VSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQ 314

Query: 228 LGEV 231
           L  V
Sbjct: 315 LENV 318



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 110/277 (39%), Gaps = 49/277 (17%)

Query: 43  TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV 102
           TF +++  CA    L     VH  +  + +    I S AL +MY KC +   A+ VFD +
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 103 QRNDVSVWNAMISGVAIHGLAADASAIFTKM--EMFNVLPDSITFLGLLTACS------- 153
              D   WNA+++G A +GL + A     +M  E     PDS+T + +L AC+       
Sbjct: 78  PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHA 137

Query: 154 ----------------------------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
                                        CG VE  R  FD M  R S+      + AM+
Sbjct: 138 CREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVS-----WNAMI 192

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE-LGEVAIVN--ISRLMGG 242
           D     G+  EA  L   M  E   V   ++L+A +    L  L EV  V+  + R+   
Sbjct: 193 DGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLS 252

Query: 243 DYVLLSN----MYCYLKRWDTAENVREIMKKKGVRKS 275
             V ++N     Y   KR D A  V   +  K  R S
Sbjct: 253 SNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRIS 289



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY- 61
           D+ V++WN+MI G+  +     A+  F EM  +   P++ TF SV+  C+  G ++    
Sbjct: 385 DRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQK 444

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIH 120
           +  ++  +  +E        ++D+  + GK+  A      +     +SV+ AM+    +H
Sbjct: 445 YFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLH 504


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  357 bits (915), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 178/410 (43%), Positives = 256/410 (62%), Gaps = 31/410 (7%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
            DV  WN++I G V+    ++ALR F  ML  +V+  + T++S +  CA L AL     +
Sbjct: 406 NDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQI 465

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H+L ++   + + +++ ALIDMY+KCG I+ A+ VFD + + D   WNAMISG ++HGLA
Sbjct: 466 HSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLA 525

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
                                       C++ GL+++G+ YF  M   + I+P +EHY  
Sbjct: 526 ----------------------------CANAGLLDQGQAYFTSMIQDHGIEPCIEHYTC 557

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD 243
           MV LLGR GH+++A  LI  +  +P V+VWRALL AC     +ELG ++  ++  +   D
Sbjct: 558 MVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQHVLEMEPQD 617

Query: 244 ---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
              +VLLSNMY   KRWD   +VR+ MK+KGV+K  G SW+E  G +H F  GD SHPE 
Sbjct: 618 KATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEV 677

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + I+ +L  L  +TK  G++P   +VL+DV +EEKE  L+ HSE+LAL++GI++T  G+ 
Sbjct: 678 RVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSP 737

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IRI KNLRIC DCH+ IK IS++++R I+VRD  RFH F+ GLCSCGDYW
Sbjct: 738 IRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 787



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 106/214 (49%), Gaps = 1/214 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD+VSW  M+  F  N  F EAL+ F +M     +P+ FTFASV   C  L A +    V
Sbjct: 203 KDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSV 262

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   ++ + EL+  +  AL+D+Y+K G I  A+  F+ + + DV  W+ MI+  A    +
Sbjct: 263 HGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQS 322

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F +M    VLP+  TF  +L AC+    +  G +   H+  +  +   +    A
Sbjct: 323 KEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHV-IKIGLHSDVFVSNA 381

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           ++D+  + G +E +  L        DV  W  ++
Sbjct: 382 LMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVI 415



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 118/220 (53%), Gaps = 3/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KDV+ W+ MI  + ++ +  EA+  F +M  + V P++FTFASV+  CA +  LN  
Sbjct: 301 IPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLG 360

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF-DTVQRNDVSVWNAMISGVAI 119
             +H  +I+  +  +  +S AL+D+Y+KCG+++ +  +F ++  RNDV+ WN +I G   
Sbjct: 361 NQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQ 420

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            G    A  +F  M  + V    +T+   L AC+    +E G +    +  + +    + 
Sbjct: 421 LGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQ-IHSLTVKTTFDKDIV 479

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A++D+  + G I++A  L+  +  + D V W A++S 
Sbjct: 480 VTNALIDMYAKCGSIKDAR-LVFDLMNKQDEVSWNAMISG 518



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 110/219 (50%), Gaps = 4/219 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++ +S+ ++I G+  + RF EA+  F  +     E + F F +++     +      
Sbjct: 99  MPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSMDCGELG 158

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           + +H  I +   E N  +  ALID YS CG++ +A+EVFD +   D+  W  M++  A +
Sbjct: 159 WGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAEN 218

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD-HMRSRYSIQPQLE 179
               +A  +F++M M    P++ TF  +  AC      + G+      ++SRY +   L 
Sbjct: 219 DCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYEL--DLY 276

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
              A++DL  ++G I++A      +  + DV+ W  +++
Sbjct: 277 VGVALLDLYTKSGDIDDARXAFEEIP-KKDVIPWSFMIA 314


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  356 bits (914), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 177/413 (42%), Positives = 249/413 (60%), Gaps = 5/413 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M   D + WNS+IGGF +N+R D AL  F+ M  +    ++ T  SV+  C  L  L   
Sbjct: 220 MVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 279

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H  I+  K + + IL+ AL+DMY KCG ++ A  VF+ ++  DV  W+ MISG+A +
Sbjct: 280 MQAHVHIV--KYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQN 337

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G + +A  +F +M+     P+ IT +G+L ACSH GL+E+G  YF  M+  Y I P  EH
Sbjct: 338 GYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREH 397

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG M+DLLG+AG +++A  L+  M  EPD V WR LL ACR  + + L E A   ++ + 
Sbjct: 398 YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALD 457

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y LLSN+Y   ++WD+ E +R  M+ +G++K  G SW+E+   IH F  GD SH
Sbjct: 458 PEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSH 517

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+   + K L  LI R    G++P T  VL D+  E+ E +L HHSEKLALA+G++    
Sbjct: 518 PQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPI 577

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IRI KNLRIC DCH + K+ S+L  R I++R  IR+H F+ G CSCGDYW
Sbjct: 578 EKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRGPIRYHHFQDGKCSCGDYW 630



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 115/219 (52%), Gaps = 7/219 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++V+SW +MI  + +     +AL     ML   V P+ +T++SV+  C     ++  
Sbjct: 122 MPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSC---NGMSDV 178

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  II++ +E +  + +ALID+++K G+ + A  VFD +   D  VWN++I G A +
Sbjct: 179 RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQN 238

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
             +  A  +F +M+    + +  T   +L AC+   L+E G +   H+  +Y     L +
Sbjct: 239 SRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI-VKYDQDLILNN 297

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A+VD+  + G +E+A  +   M  E DV+ W  ++S 
Sbjct: 298 --ALVDMYCKCGSLEDALRVFNQMK-ERDVITWSTMISG 333



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 119/295 (40%), Gaps = 62/295 (21%)

Query: 25  ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV-HNLIIEKKIELNFILSAALI 83
           A++    + S  +  D  T++ +I  C    A++    +  +L       + F+++  LI
Sbjct: 45  AMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNV-LI 103

Query: 84  DMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSI 143
           +MY K   +  A ++FD + + +V  W  MIS  +   +   A  +   M   NV P+  
Sbjct: 104 NMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVY 163

Query: 144 TFLGLLTACS--------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIE 195
           T+  +L +C+        HCG+++EG +    +RS            A++D+  + G  E
Sbjct: 164 TYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRS------------ALIDVFAKLGEPE 211

Query: 196 EAYGLITSMTMEPDVVVWRAL-----------------------------------LSAC 220
           +A  +   M +  D +VW ++                                   L AC
Sbjct: 212 DALSVFDEM-VTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRAC 270

Query: 221 RTFKRLELGEVAIVNISRLMGGDYVL---LSNMYCYLKRWDTAENVREIMKKKGV 272
                LELG  A V+I +    D +L   L +MYC     + A  V   MK++ V
Sbjct: 271 TGLALLELGMQAHVHIVKY-DQDLILNNALVDMYCKCGSLEDALRVFNQMKERDV 324


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  356 bits (914), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 181/414 (43%), Positives = 255/414 (61%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D  +W++MI  + R     EAL  FR M    +  +  +  SV+  C  L +L+H 
Sbjct: 298 MKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHG 357

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++  + + +  +++ LI MY KCG +  AK+VF+     DV +WN+MI+G + H
Sbjct: 358 KQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQH 417

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  +F  M    V PD +TF+G+L+ACS+ G V+EG + F+ M+ +Y ++P +EH
Sbjct: 418 GLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEH 477

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  +VDLLGRA  + EA  L+  M MEPD +VW ALL ACRT  +L+L EVA+  +++L 
Sbjct: 478 YACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLAQLE 537

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD-RS 296
               G YVLLSNMY Y  RW   E +RE +K + V K  G SW+E+   +H F  GD + 
Sbjct: 538 PKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPGCSWIEVEKKVHMFTGGDSKG 597

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HPE   I K+L  L    +  G+ P    VL DV EEEK  +L +HSEKLA+AYG+LK  
Sbjct: 598 HPEQPIIMKMLEKLGGLLREAGYCPDGSFVLHDVDEEEKTHSLGYHSEKLAVAYGLLKVP 657

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  IR+ KNLR+C DCHS IK+I+++  R II+RD  RFH F+ G CSC DYW
Sbjct: 658 EGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFHHFKDGHCSCKDYW 711



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 107/219 (48%), Gaps = 22/219 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPD++VVSW SM+ G+VRN    EA R F  M    V     ++  ++ G  + G ++ A
Sbjct: 112 MPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNV----VSWTVMLGGLLQEGRVDDA 167

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             + +++ EK +    +    +I  Y + G++  A+ +FD + + +V  W AM+SG A +
Sbjct: 168 RKLFDMMPEKDV----VAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARN 223

Query: 121 GLAADASAIFTKMEMFNVLP--DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           G       +    ++F V+P  + +++  +L   +H G + E    FD M     ++P +
Sbjct: 224 G------KVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAM----PVKPVV 273

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
                M+   G  G +++A  +   M  E D   W A++
Sbjct: 274 V-CNEMIMGFGLNGEVDKARRVFKGMK-ERDNGTWSAMI 310



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 31/218 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDK--FTFASVIYGCARLGALN 58
           MP ++ VSWN +I G ++N    EA R F  M      PD+   ++ S++ G  R G + 
Sbjct: 81  MPQRNTVSWNGLISGHIKNGMLSEARRVFDTM------PDRNVVSWTSMVRGYVRNGDVA 134

Query: 59  HA---YW--VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAM 113
            A   +W   H  ++   + L  +L           G++  A+++FD +   DV     M
Sbjct: 135 EAERLFWHMPHKNVVSWTVMLGGLLQE---------GRVDDARKLFDMMPEKDVVAVTNM 185

Query: 114 ISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
           I G    G   +A A+F +M   NV    +T+  +++  +  G V+  RK F+ M  R  
Sbjct: 186 IGGYCEEGRLDEARALFDEMPKRNV----VTWTAMVSGYARNGKVDVARKLFEVMPERNE 241

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           +      + AM+     +G + EA  L  +M ++P VV
Sbjct: 242 VS-----WTAMLLGYTHSGRMREASSLFDAMPVKPVVV 274



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/233 (20%), Positives = 109/233 (46%), Gaps = 13/233 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++VV+W +M+ G+ RN + D A + F  M     E ++ ++ +++ G    G +  A
Sbjct: 205 MPKRNVVTWTAMVSGYARNGKVDVARKLFEVM----PERNEVSWTAMLLGYTHSGRMREA 260

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             + + +  K +    ++   +I  +   G++  A+ VF  ++  D   W+AMI      
Sbjct: 261 SSLFDAMPVKPV----VVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERK 316

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M+   +  +  + + +L+ C     ++ G++    +  R      L  
Sbjct: 317 GYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQL-VRSEFDQDLYV 375

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI 233
              ++ +  + G++  A  +     ++ DVV+W ++++    + +  LGE A+
Sbjct: 376 ASVLITMYVKCGNLVRAKQVFNRFPLK-DVVMWNSMITG---YSQHGLGEEAL 424



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 98/219 (44%), Gaps = 22/219 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P + V SWN+M+  +    +  EAL  F +M     + +  ++  +I G  + G L+ A
Sbjct: 50  LPHRTVSSWNAMVAAYFEARQPREALLLFEKM----PQRNTVSWNGLISGHIKNGMLSEA 105

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V + + ++    N +   +++  Y + G +  A+ +F  +   +V  W  M+ G+   
Sbjct: 106 RRVFDTMPDR----NVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQE 161

Query: 121 GLAADASAIFTKMEMFNVLP--DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           G   DA       ++F+++P  D +    ++      G ++E R  FD M  R  +    
Sbjct: 162 GRVDDAR------KLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVT--- 212

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             + AMV    R G ++ A  L   M  E + V W A+L
Sbjct: 213 --WTAMVSGYARNGKVDVARKLFEVMP-ERNEVSWTAML 248



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 92/212 (43%), Gaps = 26/212 (12%)

Query: 13  IGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG--ALNHAYWVHNLIIEK 70
           I  + RN + D A + F E          +      Y  AR    AL        L+ EK
Sbjct: 29  IACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREAL--------LLFEK 80

Query: 71  KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIF 130
             + N +    LI  + K G +  A+ VFDT+   +V  W +M+ G   +G  A+A  +F
Sbjct: 81  MPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLF 140

Query: 131 TKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLG- 189
             M   NV+  ++   GLL      G V++ RK FD M  +  +        A+ +++G 
Sbjct: 141 WHMPHKNVVSWTVMLGGLLQE----GRVDDARKLFDMMPEKDVV--------AVTNMIGG 188

Query: 190 --RAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               G ++EA  L   M  + +VV W A++S 
Sbjct: 189 YCEEGRLDEARALFDEMP-KRNVVTWTAMVSG 219



 Score = 42.4 bits (98), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 101/231 (43%), Gaps = 17/231 (7%)

Query: 43  TFASVIYGC-ARLGALNHAYWVHNLIIEKKIELNFILS-AALIDMYSKCGKIQMAKEVFD 100
           T +S    C AR G L+HA  V +   E  +    + S  A++  Y +  + + A  +F+
Sbjct: 23  TSSSYAIACYARNGQLDHARKVFD---ETPLPHRTVSSWNAMVAAYFEARQPREALLLFE 79

Query: 101 TV-QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVE 159
            + QRN VS WN +ISG   +G+ ++A  +F  M   NV    +++  ++      G V 
Sbjct: 80  KMPQRNTVS-WNGLISGHIKNGMLSEARRVFDTMPDRNV----VSWTSMVRGYVRNGDVA 134

Query: 160 EGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           E  + F HM  +  +      +  M+  L + G +++A  L   M  E DVV    ++  
Sbjct: 135 EAERLFWHMPHKNVVS-----WTVMLGGLLQEGRVDDARKLFDMMP-EKDVVAVTNMIGG 188

Query: 220 CRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKK 270
                RL+        + +     +  + + Y    + D A  + E+M ++
Sbjct: 189 YCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPER 239


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  356 bits (914), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 179/425 (42%), Positives = 264/425 (62%), Gaps = 15/425 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML---------SSKV--EPDKFTFASVIY 49
           M D+D+V+WN++I G+V + R ++AL    +M          +S+V  +P+  T  +++ 
Sbjct: 462 MEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILP 521

Query: 50  GCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV 109
            CA L AL     +H   I+  +  +  + +AL+DMY+KCG +QM+++VFD +   +V  
Sbjct: 522 SCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVIT 581

Query: 110 WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169
           WN ++    +HG + DA  +   M +  V P+ +TF+ +  ACSH G+V EG K F +M+
Sbjct: 582 WNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMK 641

Query: 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV-VWRALLSACRTFKRLEL 228
             Y ++P  +HY  +VDLLGRAG ++EAY LI  +    D    W +LL ACR    LE+
Sbjct: 642 KDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEI 701

Query: 229 GEVAIVNISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAG 285
           GE+A  N+ +L   +   YVLL+N+Y     W  A  VR  MK +GVRK  G SW+E   
Sbjct: 702 GEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEHGD 761

Query: 286 VIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEK 345
            +H+F AGD SHP+++ +   L +L +R + EG++P T  VL +V E+EKE  L  HSEK
Sbjct: 762 EVHKFVAGDSSHPQSEKLRGYLETLWERMRKEGYIPDTSCVLHNVEEDEKEILLCGHSEK 821

Query: 346 LALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCS 405
           LA+A+GIL TSPGT IR++KNLR+C+DCH   K IS+++ R II+RD  RFH F+ G CS
Sbjct: 822 LAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKVVDREIILRDVRRFHHFKNGTCS 881

Query: 406 CGDYW 410
           CGDYW
Sbjct: 882 CGDYW 886



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 12/222 (5%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALN----- 58
           +D+V+WN+++    +N +F EAL + REM+   VEPD FT +SV+  C+ L  L      
Sbjct: 261 RDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKEL 320

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
           HAY + N      ++ N  + +AL+DMY  C ++     VFD +    + +WNAMI+G A
Sbjct: 321 HAYALKN----GSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYA 376

Query: 119 IHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
            +    +A  +F +M E   +L +S T  G++ AC   G   +       +  R   + +
Sbjct: 377 QNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDR 436

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                A++D+  R G I+ A  +   M  + D+V W  +++ 
Sbjct: 437 FVQ-NALMDMYSRLGKIDIAKRIFGKME-DRDLVTWNTIITG 476



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 119/231 (51%), Gaps = 14/231 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           M D+ +  WN+MI G+ +N   +EAL  F EM  S+ +  +  T A V+  C R GA + 
Sbjct: 360 MFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSK 419

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  ++++ ++ +  +  AL+DMYS+ GKI +AK +F  ++  D+  WN +I+G   
Sbjct: 420 KEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVF 479

Query: 120 HGLAADASAIFTKMEMF-----------NVLPDSITFLGLLTACSHCGLVEEGRKYFDHM 168
                DA  +  KM++            ++ P+SIT + +L +C+    + +G++   + 
Sbjct: 480 SERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYA 539

Query: 169 RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             + ++   +    A+VD+  + G ++ +  +   + +  +V+ W  ++ A
Sbjct: 540 -IKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIR-NVITWNVIVMA 588



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 102/227 (44%), Gaps = 15/227 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCAR------- 53
           + +++ VSWNS+I       +++ AL  FR ML   VEP  FT  SV   C+        
Sbjct: 155 ISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGL 214

Query: 54  -LGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA 112
            +G   HAY +      +K ELN  +   L+ MY K GK+  +K +  + +  D+  WN 
Sbjct: 215 LMGKQVHAYGL------RKGELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNT 268

Query: 113 MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY 172
           ++S +  +    +A     +M +  V PD  T   +L ACSH  ++  G++   +     
Sbjct: 269 VLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNG 328

Query: 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           S+        A+VD+      +     +   M  +  + +W A+++ 
Sbjct: 329 SLDENSFVGSALVDMYCNCKQVLSGCRVFDGM-FDRKIGLWNAMITG 374



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 106/224 (47%), Gaps = 8/224 (3%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           W  ++   VR+    EA+  + +M+   ++PD F F +++   A L  ++    +H  + 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 69  EKKIELNFILSA-ALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAIHGLAADA 126
           +    ++ +  A  L+++Y KCG      +VFD + +RN VS WN++IS +        A
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVS-WNSLISSLCSFEKWEMA 179

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY--GAM 184
              F  M   +V P S T + +  ACS+  +  EG      + +    + +L  +    +
Sbjct: 180 LEAFRCMLDEDVEPSSFTLVSVALACSNFPM-PEGLLMGKQVHAYGLRKGELNSFIINTL 238

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA-CRTFKRLE 227
           V + G+ G +  +  L+ S     D+V W  +LS+ C+  + LE
Sbjct: 239 VAMYGKMGKLASSKVLLGSFEGR-DLVTWNTVLSSLCQNEQFLE 281


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 177/412 (42%), Positives = 258/412 (62%), Gaps = 4/412 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEP-DKFTFASVIYGCARLGALNHAY 61
           DKD VS+NS++  + ++   +EA   FR ++  KV   +  T ++V+   +  GAL    
Sbjct: 248 DKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGK 307

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H+ +I   +E + I+  ++IDMY KCG+++ A+  FD ++  +V  W AMI+G  +HG
Sbjct: 308 CIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHG 367

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
            AA A  +F  M    V P+ ITF+ +L ACSH GL + G  +F+ M+ R+ ++P LEHY
Sbjct: 368 HAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHY 427

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL-- 239
           G MVDLLGRAG +++AY LI  M MEPD ++W +LL+ACR  K +EL E+++  +  L  
Sbjct: 428 GCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDP 487

Query: 240 -MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
              G Y+LLS++Y    RW   E VR  MK +G+ K  G S LEL G +H F  GD  HP
Sbjct: 488 SNCGYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHP 547

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           + + I + L  L ++    G++  T  V  DV EEEKE  L  HSEKLA+A+GI+ T PG
Sbjct: 548 QREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPG 607

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + + + KNLR+C DCH+ IK+IS+++ R  +VRD  RFH F+ G CSCGDYW
Sbjct: 608 STVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGFCSCGDYW 659



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 134/320 (41%), Gaps = 56/320 (17%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           DV SWNS+I    R+    EALR F  M    + P + +F   I  C+ L  +      H
Sbjct: 40  DVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSGKQTH 99

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
                   + +  +S+ALI MYS CGK++ A++VFD + + ++  W +MI G  ++G A 
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNAL 159

Query: 125 DASAIFTKM------EMFNVLPDSITFLGLLTACSHC---GLVEE--------------- 160
           DA ++F  +      +   +  DS+  + +++ACS     GL E                
Sbjct: 160 DAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVS 219

Query: 161 -------------------GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
                               RK FD +  +  +      Y +++ +  ++G   EA+ + 
Sbjct: 220 VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVS-----YNSIMSVYAQSGMSNEAFDVF 274

Query: 202 TSMTMEP----DVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLS----NMYCY 253
             +  E     + +    +L A      L +G+     + R+   D V++     +MYC 
Sbjct: 275 RRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCK 334

Query: 254 LKRWDTAENVREIMKKKGVR 273
             R +TA    + MK K VR
Sbjct: 335 CGRVETARLAFDRMKNKNVR 354



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 122/267 (45%), Gaps = 52/267 (19%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTF------ASVIYGCARL 54
           +P +++VSW SMI G+  N    +A+  F+++L  + + D   F       SVI  C+R+
Sbjct: 137 IPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRV 196

Query: 55  GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK--IQMAKEVFDTVQRNDVSVWNA 112
            A      +H+ +I++  +    +   L+D Y+K G+  + +A+++FD +   D   +N+
Sbjct: 197 AAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNS 256

Query: 113 MISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSH----------------- 154
           ++S  A  G++ +A  +F ++    V+  + IT   +L A SH                 
Sbjct: 257 IMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRM 316

Query: 155 ------------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196
                             CG VE  R  FD M+++      +  + AM+   G  GH  +
Sbjct: 317 GLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNK-----NVRSWTAMIAGYGMHGHAAK 371

Query: 197 AYGLITSMT---MEPDVVVWRALLSAC 220
           A  L  +M    + P+ + + ++L+AC
Sbjct: 372 ALELFPAMIDSGVRPNYITFVSVLAAC 398



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 8/125 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +K+V SW +MI G+  +    +AL  F  M+ S V P+  TF SV+  C+  G  +  
Sbjct: 348 MKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVG 407

Query: 61  -YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR----NDVSVWNAMIS 115
            +W + +     +E        ++D+  + G +Q A   +D +Q+     D  +W+++++
Sbjct: 408 WHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKA---YDLIQKMKMEPDSIIWSSLLA 464

Query: 116 GVAIH 120
              IH
Sbjct: 465 ACRIH 469


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 181/413 (43%), Positives = 249/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K++V+WN+MI G++ N R ++ ++ FR M+   ++P+  T +S + GC+ L AL   
Sbjct: 157 MPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLG 216

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH L+ +  +  +     +LI MY KCG ++   ++F  V R DV  WNAMISG A H
Sbjct: 217 RQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQH 276

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +M    + PD ITF+ +L AC+H G  + G KYF  M   Y +  + +H
Sbjct: 277 GEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDH 336

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  MVDLLGRAG + EA  LI  M  +P   V+  LL ACR  K  E+ E A   ++N+ 
Sbjct: 337 YTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTEMAEFASQKLLNLD 396

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 YV L+N+Y   KRWD    VR+ MK   V K+ G SW+E+  + HQF++GD+ H
Sbjct: 397 PASATGYVQLANVYAATKRWDHVARVRKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFH 456

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE  +I   L  L ++ K  G++P  E  L DV EE+KE  L  HSEKLA+AYG++K  P
Sbjct: 457 PELASIHGKLKELEKKMKLAGYVPDLEFALHDVGEEQKEQLLLWHSEKLAIAYGLIKLPP 516

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IR+ KNLR+C DCH  IK IS++ RR IIVRD  RFH F+ G CSC DYW
Sbjct: 517 GTPIRVFKNLRVCGDCHRAIKYISQIERREIIVRDTTRFHHFKDGHCSCADYW 569



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 121/286 (42%), Gaps = 55/286 (19%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD  SWN+MI GF +N + D+A   F  M +  V     T+ ++I G    G L+ A
Sbjct: 64  MPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNV----VTWNAMISGYVECGDLDSA 119

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                 + EK    + +   A+I  Y K G+I +A+ +F+ +   ++  WNAMI+G   +
Sbjct: 120 L----KLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIEN 175

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSH-------------------------- 154
             A D   +F  M  F + P+S T    L  CS                           
Sbjct: 176 HRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAG 235

Query: 155 ---------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
                    CG++E+G K F  +  R  +      + AM+    + G  ++A GL   M 
Sbjct: 236 TSLISMYCKCGVLEDGWKLFVQVPRRDVVT-----WNAMISGYAQHGEGKKALGLFDEMI 290

Query: 206 ---MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLS 248
              M+PD + + A+L AC      +LG    V     M  DY L++
Sbjct: 291 EKGMKPDWITFVAVLMACNHAGFTDLG----VKYFHSMAKDYGLVA 332


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 181/410 (44%), Positives = 259/410 (63%), Gaps = 3/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD +S+ +++ G V+N + +EA   F++M +  +EPD  T  S+I  C+ L AL H    
Sbjct: 371 KDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCS 430

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I + + L   +  +LIDMY+KCGKI ++++VFD +   DV  WN MI+G  IHGL 
Sbjct: 431 HGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLG 490

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A+ +F  M+     PD +TF+ L+ ACSH GLV EG+ +FD M  +Y I P++EHY  
Sbjct: 491 KEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYIC 550

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG-- 241
           MVDLL R G ++EAY  I SM ++ DV VW ALL ACR  K ++LG+     I +L    
Sbjct: 551 MVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEG 610

Query: 242 -GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G++VLLSN++    R+D A  VR I K KG +KS G SW+E+ G +H F  GD+SHP +
Sbjct: 611 TGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCS 670

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + I   L +++   K  G+   T  VL D+ EEEKE  L +HSEKLA+A+G+L  +    
Sbjct: 671 RDIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKT 730

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           I ++KNLR+C DCH+ IK ++ +  R IIVRD  RFH F+ G CSCG++W
Sbjct: 731 IFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 9/223 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKF----TFASVIYGCARLGA 56
           MP ++ V+W+++IGGFV   R  EA   F++ML   VE   F    + AS +  CA L  
Sbjct: 266 MPVRNDVTWSALIGGFVLCDRMTEAFNLFKDML---VEGLCFLSATSVASALRVCASLAD 322

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
           L+    +H LI +  I  +   S +L+ MY+K G I  A   FD +   D   + A++SG
Sbjct: 323 LHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSG 382

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
              +G A +A  +F KM+  N+ PD  T + L+ ACSH   ++ G+     +  R  +  
Sbjct: 383 CVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIR-GLAL 441

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +     +++D+  + G I+ +  +   M    DVV W  +++ 
Sbjct: 442 ETSICNSLIDMYAKCGKIDLSRQVFDKMPAR-DVVSWNTMIAG 483



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 103/225 (45%), Gaps = 14/225 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  D  ++N++I  +     F  A+  +R ML  +V P+K+TF  V+  C+ L  L   
Sbjct: 60  IPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSALVDLRAG 119

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H       +  +  +S ALID+Y +C +   A+ VF  +   DV  WNAM++G A H
Sbjct: 120 RTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANH 179

Query: 121 GLAADASAIFTKMEMFNVL-PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           G+   A A    M+    L P++ T + LL   +  G + +G          Y ++  LE
Sbjct: 180 GMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSI-----HAYCLRACLE 234

Query: 180 HY-------GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
                     A++D+  +   +  A  +   M +  D V W AL+
Sbjct: 235 QNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRND-VTWSALI 278



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 120/281 (42%), Gaps = 60/281 (21%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           MP +DVV+WN+M+ G+  +  +  A+    +M     + P+  T  S++   A+ GAL  
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220

Query: 60  AYWVHNLIIEKKIELN---FILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMIS 115
              +H   +   +E N    ++  AL+DMY+KC ++  A  VF  +  RNDV+ W+A+I 
Sbjct: 221 GTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVT-WSALIG 279

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFL----------------------------- 146
           G  +     +A  +F  M     L + + FL                             
Sbjct: 280 GFVLCDRMTEAFNLFKDM-----LVEGLCFLSATSVASALRVCASLADLHMGTQLHALIA 334

Query: 147 ------------GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194
                        LL+  +  GL+ E   +FD +  + +I      YGA++    + G  
Sbjct: 335 KSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTIS-----YGALLSGCVQNGKA 389

Query: 195 EEAYGLITSM---TMEPDVVVWRALLSACRTFKRLELGEVA 232
           EEA+ +   M    MEPD+    +L+ AC     L+ G+ +
Sbjct: 390 EEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCS 430



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVVSWN+MI G+  +    EA   F  M +    PD  TF  +I  C+  G +   
Sbjct: 469 MPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEG 528

Query: 61  -YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
            +W   +  +  I         ++D+ ++ G +  A +   ++  + DV VW A++    
Sbjct: 529 KHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACR 588

Query: 119 IH 120
           IH
Sbjct: 589 IH 590



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 2/130 (1%)

Query: 90  GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
           G++ +A++VFD +   D   +NA+I   +  G    A  ++  M  F V P+  TF  +L
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
            ACS    +  GR       +   +   L    A++DL  R      A  +   M M  D
Sbjct: 108 KACSALVDLRAGRT-IHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMR-D 165

Query: 210 VVVWRALLSA 219
           VV W A+L+ 
Sbjct: 166 VVAWNAMLAG 175


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 181/410 (44%), Positives = 259/410 (63%), Gaps = 3/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD +S+ +++ G V+N + +EA   F++M +  +EPD  T  S+I  C+ L AL H    
Sbjct: 371 KDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCS 430

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I + + L   +  +LIDMY+KCGKI ++++VFD +   DV  WN MI+G  IHGL 
Sbjct: 431 HGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLG 490

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A+ +F  M+     PD +TF+ L+ ACSH GLV EG+ +FD M  +Y I P++EHY  
Sbjct: 491 KEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYIC 550

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG-- 241
           MVDLL R G ++EAY  I SM ++ DV VW ALL ACR  K ++LG+     I +L    
Sbjct: 551 MVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEG 610

Query: 242 -GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G++VLLSN++    R+D A  VR I K KG +KS G SW+E+ G +H F  GD+SHP +
Sbjct: 611 TGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCS 670

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + I   L +++   K  G+   T  VL D+ EEEKE  L +HSEKLA+A+G+L  +    
Sbjct: 671 RDIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKT 730

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           I ++KNLR+C DCH+ IK ++ +  R IIVRD  RFH F+ G CSCG++W
Sbjct: 731 IFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 9/223 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKF----TFASVIYGCARLGA 56
           MP ++ V+W+++IGGFV   R  EA   F++ML   VE   F    + AS +  CA L  
Sbjct: 266 MPVRNDVTWSALIGGFVLCDRMTEAFNLFKDML---VEGLCFLSATSVASALRVCASLAD 322

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
           L+    +H LI +  I  +   S +L+ MY+K G I  A   FD +   D   + A++SG
Sbjct: 323 LHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSG 382

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
              +G A +A  +F KM+  N+ PD  T + L+ ACSH   ++ G+     +  R  +  
Sbjct: 383 CVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIR-GLAL 441

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +     +++D+  + G I+ +  +   M    DVV W  +++ 
Sbjct: 442 ETSICNSLIDMYAKCGKIDLSRQVFDKMPAR-DVVSWNTMIAG 483



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 103/225 (45%), Gaps = 14/225 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  D  ++N++I  +     F  A+  +R ML  +V P+K+TF  V+  C+ L  L   
Sbjct: 60  IPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSALVDLRAG 119

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H       +  +  +S ALID+Y +C +   A+ VF  +   DV  WNAM++G A H
Sbjct: 120 RTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANH 179

Query: 121 GLAADASAIFTKMEMFNVL-PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           G+   A A    M+    L P++ T + LL   +  G + +G          Y ++  LE
Sbjct: 180 GMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSI-----HAYCLRACLE 234

Query: 180 HY-------GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
                     A++D+  +   +  A  +   M +  D V W AL+
Sbjct: 235 QNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRND-VTWSALI 278



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 120/281 (42%), Gaps = 60/281 (21%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           MP +DVV+WN+M+ G+  +  +  A+    +M     + P+  T  S++   A+ GAL  
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220

Query: 60  AYWVHNLIIEKKIELN---FILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMIS 115
              +H   +   +E N    ++  AL+DMY+KC ++  A  VF  +  RNDV+ W+A+I 
Sbjct: 221 GTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVT-WSALIG 279

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFL----------------------------- 146
           G  +     +A  +F  M     L + + FL                             
Sbjct: 280 GFVLCDRMTEAFNLFKDM-----LVEGLCFLSATSVASALRVCASLADLHMGTQLHALIA 334

Query: 147 ------------GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194
                        LL+  +  GL+ E   +FD +  + +I      YGA++    + G  
Sbjct: 335 KSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTIS-----YGALLSGCVQNGKA 389

Query: 195 EEAYGLITSM---TMEPDVVVWRALLSACRTFKRLELGEVA 232
           EEA+ +   M    MEPD+    +L+ AC     L+ G+ +
Sbjct: 390 EEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCS 430



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVVSWN+MI G+  +    EA   F  M +    PD  TF  +I  C+  G +   
Sbjct: 469 MPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEG 528

Query: 61  -YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
            +W   +  +  I         ++D+ ++ G +  A +   ++  + DV VW A++    
Sbjct: 529 KHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACR 588

Query: 119 IH 120
           IH
Sbjct: 589 IH 590



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 2/130 (1%)

Query: 90  GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
           G++ +A++VFD +   D   +NA+I   +  G    A  ++  M  F V P+  TF  +L
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
            ACS    +  GR       +   +   L    A++DL  R      A  +   M M  D
Sbjct: 108 KACSALVDLRAGRT-IHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMR-D 165

Query: 210 VVVWRALLSA 219
           VV W A+L+ 
Sbjct: 166 VVAWNAMLAG 175


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 174/411 (42%), Positives = 256/411 (62%), Gaps = 4/411 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDVVSW SMI  +V N   +EAL  F  M  + VEPD  +  S++   A L AL     +
Sbjct: 547 KDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEI 606

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I K   L   L++ L+DMY++CG ++ ++ VF+ ++  D+ +W +MI+   +HG  
Sbjct: 607 HGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCG 666

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  +F +ME  ++ PD I F+ +L ACSH GL+ EGR++ + M+  Y ++P  EHY  
Sbjct: 667 RAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYAC 726

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
           +VDLLGRA H+EEAY  +  M +EP   VW ALL AC+     ELGE+A   ++ +    
Sbjct: 727 LVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPEN 786

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G+YVL+SN+Y   +RW   E VR  MK  G++K+ G SW+E+   +H F A D+SHP++
Sbjct: 787 PGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQS 846

Query: 301 QAIDKILGSLIQRTKSE-GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
             I   L  + ++   E G++  T+ VL +  EEEK   LY HSE+LA+AYG+L T  G 
Sbjct: 847 YEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLTTPEGA 906

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            +RI+KNLR+C DCH++ K+IS+   R +++RD  RFH F+GG+CSCGD W
Sbjct: 907 SLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 957



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 119/223 (53%), Gaps = 9/223 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP K + +WN+MIG +V N     +L  +REM  S +  D  TF  ++  C  L    + 
Sbjct: 140 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYG 199

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAI 119
             VH L I++       ++ +++ MY+KC  +  A+++FD + ++ DV  WN+MIS  + 
Sbjct: 200 AEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSS 259

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH---MRSRYSIQP 176
           +G + +A  +F +M+  ++ P++ TF+  L AC     +++G   F H   ++S Y I  
Sbjct: 260 NGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGM--FIHATVLKSSYYINV 317

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            + +  A++ +  R G + EA  +  +M  + D + W ++LS 
Sbjct: 318 FVAN--ALIAMYARFGKMGEAANIFYNMD-DWDTISWNSMLSG 357



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 121/220 (55%), Gaps = 5/220 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPDKDVVSW ++I G  +N     AL  FRE+    ++ D    +S++  C+ L  ++  
Sbjct: 444 MPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSV 503

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ II K +  + +L   ++D+Y +CG +  A  +F+ ++  DV  W +MIS    +
Sbjct: 504 KEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHN 562

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLE 179
           GLA +A  +F  M+   V PDSI+ + +L+A +    +++G++    + R  + ++  L 
Sbjct: 563 GLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLA 622

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               +VD+  R G +E++  +  +     D+V+W ++++A
Sbjct: 623 --STLVDMYARCGTLEKSRNVF-NFIRNKDLVLWTSMINA 659



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 114/218 (52%), Gaps = 3/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D D +SWNSM+ GFV+N  + EAL+F+ EM  +  +PD     S+I   AR G   H 
Sbjct: 343 MDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHG 402

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++  ++ +  +  +L+DMY+K   ++    +FD +   DV  W  +I+G A +
Sbjct: 403 MQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQN 462

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  + A  +F ++++  +  D +    +L ACS   L+   ++   ++  +      L++
Sbjct: 463 GSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQN 522

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
              +VD+ G  G+++ A  +   +  + DVV W +++S
Sbjct: 523 --GIVDVYGECGNVDYAARMFELIEFK-DVVSWTSMIS 557



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 108/220 (49%), Gaps = 3/220 (1%)

Query: 1   MPDK-DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           MP+K DVVSWNSMI  +  N +  EALR F EM  + + P+ +TF + +  C     +  
Sbjct: 241 MPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQ 300

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             ++H  +++    +N  ++ ALI MY++ GK+  A  +F  +   D   WN+M+SG   
Sbjct: 301 GMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQ 360

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +GL  +A   + +M      PD +  + ++ A +  G    G +   +   +  +   L+
Sbjct: 361 NGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAM-KNGLDSDLQ 419

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              ++VD+  +   ++    +   M  + DVV W  +++ 
Sbjct: 420 VGNSLVDMYAKFCSMKYMDCIFDKMP-DKDVVSWTTIIAG 458



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 21/214 (9%)

Query: 18  RNARFDEALRFFREMLSSKVEPDKFT----FASVIYGCARLGALNHAYWVHNLIIEKKIE 73
           +    +EA +   ++ +++  P +F+    ++SV+  C    AL+    VH  +I     
Sbjct: 52  KRGSVNEAFQSLTDLFANQ-SPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNAL 110

Query: 74  LNFI-LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTK 132
            N + LS  L+ MY KCG +  A+++FD +    +  WNAMI     +G    +  ++ +
Sbjct: 111 FNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYRE 170

Query: 133 MEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY-------GAMV 185
           M +  +  D+ TF  +L A   CGL+++ R+Y   +    +I+   E Y        ++V
Sbjct: 171 MRVSGIPLDACTFPCILKA---CGLLKD-RRYGAEVHG-LAIK---EGYVSIVFVANSIV 222

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            +  +   +  A  L   M  + DVV W +++SA
Sbjct: 223 GMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISA 256



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA-Y 61
           +KD+V W SMI  +  +     A+  FR M    + PD   F +V+Y C+  G +N    
Sbjct: 647 NKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRR 706

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS-VWNAMISGVAIH 120
           ++ ++  E ++E      A L+D+  +   ++ A +    ++    + VW A++    IH
Sbjct: 707 FLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIH 766


>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 184/426 (43%), Positives = 263/426 (61%), Gaps = 26/426 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++ +VSWNSMI   VR   +D AL+ FR+M  S  EPD +T  SV+  CA LG+L+  
Sbjct: 193 MPERSLVSWNSMIDALVRVGEYDSALQLFRDMQKS-FEPDGYTMQSVLSACAGLGSLSLG 251

Query: 61  YWVHNLIIEK---KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
            W H  ++      + ++ ++  +LI+MY KCG ++MA++VF  ++++D++ WNAMI G 
Sbjct: 252 TWSHVFLLRNCDVDVAMDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLASWNAMILGF 311

Query: 118 AIHGLAADASAIFTKM--EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           A HG A +A   F  M  E  NV P+S+TF+ LL AC+H G+V +GR+YFD M   Y I+
Sbjct: 312 ATHGKAEEAMNCFDCMVKEGKNVKPNSVTFVALLIACNHRGMVNKGRQYFDMMVREYGIE 371

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA-CRTFKRLELGEVAIV 234
           P LEHYG ++DLL RAG+I EA  ++ SM M+PD V+WR+LL A C+    +EL E    
Sbjct: 372 PALEHYGCIIDLLARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIAR 431

Query: 235 NISRLM----------GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELA 284
           NI   M           G YVLLS +Y    RW+    VR++M   G+RK  G S +E+ 
Sbjct: 432 NIIGTMEDNQSSNSNCSGAYVLLSRVYASANRWNDVGIVRKLMSDHGIRKEPGCSSIEIN 491

Query: 285 GVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSE 344
           G+ ++F AGD SHP+ + I + L  +  R +S         ++   ++  KE +L  HSE
Sbjct: 492 GISNEFFAGDTSHPQTKQIYQQLKVIDDRLRS---------IVDATNDSSKEYSLRLHSE 542

Query: 345 KLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLC 404
           +LA+A+G++   P T IRI KNLR+C DCH   K+IS++    IIVRDR+RFH F+ G C
Sbjct: 543 RLAIAFGLISLPPQTPIRIFKNLRVCSDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSC 602

Query: 405 SCGDYW 410
           SC DYW
Sbjct: 603 SCLDYW 608



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 102/257 (39%), Gaps = 51/257 (19%)

Query: 9   WNSMIGGFVRN-ARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           WN++I     + +R +EA   +R+ML   +  PDK TF  V+  CA +  L+    VH  
Sbjct: 98  WNTLIRACAHDVSRKEEAFMLYRKMLERGESAPDKHTFPFVLKACAYIFGLSEGKQVHCQ 157

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           I++     +  ++  LI  Y  CG + +A++VFD +    +  WN+MI  +   G    A
Sbjct: 158 IVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRVGEYDSA 217

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTAC-----------SH--------------------- 154
             +F  M+  +  PD  T   +L+AC           SH                     
Sbjct: 218 LQLFRDMQK-SFEPDGYTMQSVLSACAGLGSLSLGTWSHVFLLRNCDVDVAMDVLIKNSL 276

Query: 155 ------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME- 207
                 CG +    + F  MR        L  + AM+      G  EEA      M  E 
Sbjct: 277 IEMYCKCGSLRMAEQVFQGMRKH-----DLASWNAMILGFATHGKAEEAMNCFDCMVKEG 331

Query: 208 ----PDVVVWRALLSAC 220
               P+ V + ALL AC
Sbjct: 332 KNVKPNSVTFVALLIAC 348



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 113/284 (39%), Gaps = 62/284 (21%)

Query: 46  SVIYGCARLGALN--HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           S+   C+ +  L   HA+ +     ++   L   L   ++ + S    +  A  VFD+++
Sbjct: 34  SLAETCSDMSQLKQLHAFTLRTTYPDEPATL--FLYGKILQLSSSFSDVNYAFRVFDSIE 91

Query: 104 RNDVSVWNAMISGVAIHGLA--ADASAIFTKM-EMFNVLPDSITFLGLLTACS------- 153
            +   +WN +I   A H ++   +A  ++ KM E     PD  TF  +L AC+       
Sbjct: 92  NHSSFMWNTLIRACA-HDVSRKEEAFMLYRKMLERGESAPDKHTFPFVLKACAYIFGLSE 150

Query: 154 ----HCGLVEEG------------------------RKYFDHMRSRYSIQPQLEHYGAMV 185
               HC +V+ G                        RK FD M  R      L  + +M+
Sbjct: 151 GKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPER-----SLVSWNSMI 205

Query: 186 DLLGRAGHIEEAYGLITSM--TMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD 243
           D L R G  + A  L   M  + EPD    +++LSAC     L LG  + V + R    D
Sbjct: 206 DALVRVGEYDSALQLFRDMQKSFEPDGYTMQSVLSACAGLGSLSLGTWSHVFLLRNCDVD 265

Query: 244 Y---VLLSN----MYCYLKRWDTAENVREIMKKKGVRKSQGKSW 280
               VL+ N    MYC       AE V +     G+RK    SW
Sbjct: 266 VAMDVLIKNSLIEMYCKCGSLRMAEQVFQ-----GMRKHDLASW 304


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 175/414 (42%), Positives = 253/414 (61%), Gaps = 10/414 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD+V+W SMI  +  +   +EAL  F EM S+ V+PD     S++     L +L     V
Sbjct: 530 KDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEV 589

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I +   +   + ++L+DMYS CG +  A +VF+ V+  D+ +W AMI+   +HG  
Sbjct: 590 HGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHG 649

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  +F +M    V PD ++FL LL ACSH  LV EG+ Y D M S Y ++P  EHY  
Sbjct: 650 KQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYAC 709

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM--- 240
           +VDLLGR+G  EEAY  I SM ++P  VVW +LL ACR  K  EL   A+V  +RL+   
Sbjct: 710 VVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHEL---AVVAANRLLELE 766

Query: 241 ---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G+YVL+SN++  + +W+ A+ VR  + ++G+RK    SW+E+   +H F   D SH
Sbjct: 767 PDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNVHTFTTRDNSH 826

Query: 298 PEAQAIDKILGSLIQRTKSE-GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
            +A+ I+  L  + +R + E G+   T  VL DVSEEEK   L+ HSE+LA+++G++ T 
Sbjct: 827 RDAERINLKLAEITERLRKEGGYTEDTRSVLHDVSEEEKVDVLHRHSERLAISFGLINTR 886

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PG  +RI+KNLR+C DCH + K++S+L  R I+VRD  RFH F GG CSCGD+W
Sbjct: 887 PGMPLRIAKNLRVCGDCHEFTKLVSKLFDRDIVVRDANRFHHFSGGSCSCGDFW 940



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 117/217 (53%), Gaps = 5/217 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD +SW ++I  + +++R  EAL  FRE     ++ D     S++  C+ L  +  A  +
Sbjct: 430 KDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQL 489

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   I   + L+ ++   +ID+Y +CG++  + ++F+TV++ D+  W +MI+  A  GL 
Sbjct: 490 HCYAIRNGL-LDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLL 548

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLEHYG 182
            +A  +F +M+  +V PDS+  + +L A      + +G++    + R  + ++  +    
Sbjct: 549 NEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAI--VS 606

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++VD+    G +  A  +  ++  + D+V+W A+++A
Sbjct: 607 SLVDMYSGCGSLSGALKVFNAVKCK-DMVLWTAMINA 642



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 109/216 (50%), Gaps = 5/216 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +DV SWNSMI G ++N  F +AL  FR M  + +  + +T   V+  C  L  LN    +
Sbjct: 229 RDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGREL 288

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +++   E+N I   AL+ MY+KCG++  A  VF  +   D   WN+M+S    +GL 
Sbjct: 289 HAALLKSGSEVN-IQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLY 347

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYG 182
           A+A    ++M      PD    + L +A  H G +  G++   + ++ R     Q+ +  
Sbjct: 348 AEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGN-- 405

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
            ++D+  +  +IE +  +   M ++ D + W  +++
Sbjct: 406 TLMDMYMKCRYIEYSAHVFDRMRIK-DHISWTTIIT 440



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 9/223 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM---LSSKVEPDKFTFASVIYGCARLGAL 57
           M  + V SWN++IG ++ +    EAL  +R M    +S V PD  T ASV+      G  
Sbjct: 121 MSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDG 180

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN-DVSVWNAMISG 116
                VH L ++  ++ +  ++ ALI MY+KCG +  A  VF+ +    DV+ WN+MISG
Sbjct: 181 RCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISG 240

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQ 175
              +G+   A  +F  M+   +  +S T +G+L  C+    +  GR+ +   ++S   + 
Sbjct: 241 CLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVN 300

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
            Q     A++ +  + G ++ A  +   +  E D + W ++LS
Sbjct: 301 IQCN---ALLVMYTKCGRVDSALRVFREID-EKDYISWNSMLS 339



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 103/216 (47%), Gaps = 3/216 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +KD +SWNSM+  +V+N  + EA+ F  EML    +PD     S+      LG L +   
Sbjct: 328 EKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKE 387

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH   I+++++ +  +   L+DMY KC  I+ +  VFD ++  D   W  +I+  A    
Sbjct: 388 VHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSR 447

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  IF + +   +  D +    +L ACS    +   ++   H  +  +    L    
Sbjct: 448 HIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQL--HCYAIRNGLLDLVVKN 505

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
            ++D+ G  G +  +  +  ++  + D+V W ++++
Sbjct: 506 RIIDIYGECGEVYHSLKMFETVE-QKDIVTWTSMIN 540



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 8/148 (5%)

Query: 78  LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEM-- 135
           L+  L+ MY KCG++  A+ +FD +    V  WNA+I      G A +A  ++  M +  
Sbjct: 97  LATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSA 156

Query: 136 -FNVLPDSITFLGLLTACSHCGLVEEGRKYFD--HMRSRYSIQPQLEHYGAMVDLLGRAG 192
              V PD  T   +L A    G+  +GR   +   +  ++ +        A++ +  + G
Sbjct: 157 ASGVAPDGCTLASVLKA---SGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCG 213

Query: 193 HIEEAYGLITSMTMEPDVVVWRALLSAC 220
            ++ A  +   M    DV  W +++S C
Sbjct: 214 ILDSAMRVFELMHDGRDVASWNSMISGC 241


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 181/435 (41%), Positives = 257/435 (59%), Gaps = 25/435 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML----------------SSKVEPDKFTF 44
           M D+D+VSWN++I  +V   R  +AL    EM                     +P+  T 
Sbjct: 380 MEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITL 439

Query: 45  ASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR 104
            +V+ GCA L AL     +H   I   +     + +AL+DMY+KCG + +A+ VFD +  
Sbjct: 440 MTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPI 499

Query: 105 NDVSVWNAMISGVAIHGLAADASAIFTKM-----EMFNVLPDSITFLGLLTACSHCGLVE 159
            +V  WN +I    +HG   ++  +F  M     +   V P  +TF+ L  +CSH G+V+
Sbjct: 500 RNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVD 559

Query: 160 EGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV-VWRALLS 218
           EG   F  M++ + I+P  +HY  +VDL+GRAG +EEAYGL+ +M    D V  W +LL 
Sbjct: 560 EGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLG 619

Query: 219 ACRTFKRLELGEVAIVNISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKS 275
           ACR +  +E+GE+A  N+ +L   +   YVLLSN+Y     WD A N+R  MK  GV+K 
Sbjct: 620 ACRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKE 679

Query: 276 QGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEK 335
            G SW+E    +H+F AGD SHP+++ +   L +L +R K EG++P T  VL D+ EEEK
Sbjct: 680 PGCSWIEYGDEVHKFLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTACVLHDIDEEEK 739

Query: 336 EGNLYHHSEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIR 395
           E  L  HSEKLA+A+GIL T PGT IR++KNLR+C+DCH+  K IS++  R II+RD  R
Sbjct: 740 ETILCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHTASKFISKIEDREIILRDARR 799

Query: 396 FHRFEGGLCSCGDYW 410
           FH F+ G CSCGDYW
Sbjct: 800 FHHFKDGTCSCGDYW 814



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 116/220 (52%), Gaps = 6/220 (2%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+D+V+WNSMI  F +N RF EAL F R M+   V+PD  TFASV+  C+ L  L     
Sbjct: 178 DRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKE 237

Query: 63  VH--NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           +H   L  +  IE +F+  +AL+DMY  CG+++  + VFD+V    + +WNAMI+G A  
Sbjct: 238 IHAYALRTDDVIENSFV-GSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQS 296

Query: 121 GLAADASAIFTKME-MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
                A  +F +ME    +  ++ T   ++ A   C  +        ++  R  ++    
Sbjct: 297 EHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKR-GLETNRY 355

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A++D+  R G I+ +  +  SM  + D+V W  ++++
Sbjct: 356 LQNALIDMYSRMGDIKTSKRIFDSME-DRDIVSWNTIITS 394



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 116/234 (49%), Gaps = 19/234 (8%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNHAY 61
           D+ +  WN+MI G+ ++   ++AL  F EM  ++ +  +  T +S++    R   ++   
Sbjct: 280 DRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKE 339

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H  +I++ +E N  L  ALIDMYS+ G I+ +K +FD+++  D+  WN +I+   I G
Sbjct: 340 GIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICG 399

Query: 122 LAADASAIFTKMEMFN----------------VLPDSITFLGLLTACSHCGLVEEGRKYF 165
            ++DA  +  +M+                     P+SIT + +L  C+    + +G++  
Sbjct: 400 RSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIH 459

Query: 166 DHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            +   R  +  Q+    A+VD+  + G +  A  +   M +  +V+ W  ++ A
Sbjct: 460 AYA-IRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIR-NVITWNVIIMA 511



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 106/223 (47%), Gaps = 7/223 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARL---GAL 57
           + ++D VSWNS+I    R   ++ A++ FR ML    EP  FT  S+   C+ L     L
Sbjct: 73  ITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGL 132

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
                +H     K     F  + AL+ MY+K G++  AK +    +  D+  WN+MIS  
Sbjct: 133 WLGKQIHGCCFRKGHWRTFS-NNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSF 191

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQP 176
           + +    +A      M +  V PD +TF  +L ACSH  L+  G++   + +R+   I+ 
Sbjct: 192 SQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIEN 251

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                 A+VD+    G +E    L+    ++  + +W A+++ 
Sbjct: 252 SFVG-SALVDMYCNCGQVESGR-LVFDSVLDRKIGLWNAMIAG 292



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 87/211 (41%), Gaps = 30/211 (14%)

Query: 32  MLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIEL--NFILSAALIDMYSKC 89
           M+ S   PD F F +V+   A +  L     +H  + +       +  +   L++MY KC
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 90  GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
           G +  A +VFD +   D   WN++IS +        A   F  M M    P S T + + 
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMA 120

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG--------------AMVDLLGRAGHIE 195
            ACS             ++R R  +    + +G              A++ +  + G ++
Sbjct: 121 LACS-------------NLRKRDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKLGRLD 167

Query: 196 EAYGLITSMTMEPDVVVWRALLSACRTFKRL 226
           +A  L+  +  + D+V W +++S+    +R 
Sbjct: 168 DAKSLLV-LFEDRDLVTWNSMISSFSQNERF 197


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 178/411 (43%), Positives = 250/411 (60%), Gaps = 4/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K  V+WN+MI G+ +N    EAL  F  M S  ++ D FT   VI   A       A W
Sbjct: 409 EKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKW 468

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H L +   ++ N  +S AL+DMY+KCG I+ A+++FD +Q   V  WNAMI G   HG+
Sbjct: 469 IHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGV 528

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +   +F +M+   V P+ ITFL +++ACSH G VEEG   F  M+  Y ++P ++HY 
Sbjct: 529 GKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYS 588

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL--- 239
           AMVDLLGRAG +++A+  I  M ++P + V  A+L AC+  K +ELGE A   + +L   
Sbjct: 589 AMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPD 648

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
            GG +VLL+N+Y     WD    VR  M+ KG+ K+ G SW+EL   IH F +G  +HPE
Sbjct: 649 EGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTFYSGSTNHPE 708

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           ++ I   L +L    K+ G++P  + +  DV E+ K+  L  HSE+LA+A+G+L TSPGT
Sbjct: 709 SKKIYAFLETLGDEIKAAGYVPDPDSI-HDVEEDVKKQLLSSHSERLAIAFGLLNTSPGT 767

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            + I KNLR+C DCH   K IS +  R IIVRD  RFH F+ G CSCGDYW
Sbjct: 768 TLHIRKNLRVCGDCHDTTKYISLVTGREIIVRDLRRFHHFKNGSCSCGDYW 818



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 109/218 (50%), Gaps = 5/218 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD+VSW +++ G+ +N     AL+   +M  +  +PD  T  S++   A + AL   
Sbjct: 206 MQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIG 265

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H        E    ++ AL+DMY KCG  ++A+ VF  ++   V  WN MI G A +
Sbjct: 266 RSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQN 325

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
           G + +A A F KM     +P  +T +G+L AC++ G +E G  +F H +  +  +   + 
Sbjct: 326 GESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERG--WFVHKLLDKLKLDSNVS 383

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              +++ +  +   ++ A  +  +  +E   V W A++
Sbjct: 384 VMNSLISMYSKCKRVDIAASIFNN--LEKTNVTWNAMI 419



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 124/308 (40%), Gaps = 47/308 (15%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           V ++ M+ G+ +N+   +AL FF  M+  +V      +A ++  C     L     +H L
Sbjct: 111 VLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGL 170

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           II    E N  +  A++ +Y+KC +I  A ++F+ +Q  D+  W  +++G A +G A  A
Sbjct: 171 IITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRA 230

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACS--------------------------------- 153
             +  +M+     PDS+T + +L A +                                 
Sbjct: 231 LQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDM 290

Query: 154 --HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME---P 208
              CG     R  F  MRS+  +      +  M+D   + G  EEA+     M  E   P
Sbjct: 291 YFKCGSARIARLVFKGMRSKTVVS-----WNTMIDGCAQNGESEEAFATFLKMLDEGEVP 345

Query: 209 DVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSN----MYCYLKRWDTAENVR 264
             V    +L AC     LE G      + +L     V + N    MY   KR D A ++ 
Sbjct: 346 TRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIF 405

Query: 265 EIMKKKGV 272
             ++K  V
Sbjct: 406 NNLEKTNV 413



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 12/127 (9%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++ V++WN+MI G+  +    E L  F EM    V+P+  TF SVI  C+  G +   
Sbjct: 508 MQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEG 567

Query: 61  YWVHNLIIEKKIELNFILS------AALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAM 113
                L++ K ++ ++ L       +A++D+  + G++  A      +  +  +SV  AM
Sbjct: 568 -----LLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAM 622

Query: 114 ISGVAIH 120
           +    IH
Sbjct: 623 LGACKIH 629


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 174/411 (42%), Positives = 256/411 (62%), Gaps = 4/411 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDVVSW SMI  +V N   +EAL  F  M  + VEPD  +  S++   A L AL     +
Sbjct: 583 KDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEI 642

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I K   L   L++ L+DMY++CG ++ ++ VF+ ++  D+ +W +MI+   +HG  
Sbjct: 643 HGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCG 702

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  +F +ME  ++ PD I F+ +L ACSH GL+ EGR++ + M+  Y ++P  EHY  
Sbjct: 703 RAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVC 762

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
           +VDLLGRA H+EEAY  +  M +EP   VW ALL AC+     ELGE+A   ++ +    
Sbjct: 763 LVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPEN 822

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G+YVL+SN+Y   +RW   E VR  MK  G++K+ G SW+E+   +H F A D+SHP++
Sbjct: 823 PGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQS 882

Query: 301 QAIDKILGSLIQRTKSE-GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
             I   L  + ++   E G++  T+ VL +  EEEK   LY HSE+LA+AYG+L T  G 
Sbjct: 883 YEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLTTPEGA 942

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            +RI+KNLR+C DCH++ K+IS+   R +++RD  RFH F+GG+CSCGD W
Sbjct: 943 SLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 993



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 121/220 (55%), Gaps = 5/220 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPDKDVVSW ++I G  +N     AL  FRE+    ++ D    +S++  C+ L  ++  
Sbjct: 480 MPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSV 539

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ II K +  + +L   ++D+Y +CG +  A  +F+ ++  DV  W +MIS    +
Sbjct: 540 KEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHN 598

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLE 179
           GLA +A  +F  M+   V PDSI+ + +L+A +    +++G++    + R  + ++  L 
Sbjct: 599 GLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLA 658

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               +VD+  R G +E++  +  +     D+V+W ++++A
Sbjct: 659 --STLVDMYARCGTLEKSRNVF-NFIRNKDLVLWTSMINA 695



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 118/223 (52%), Gaps = 9/223 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP K + +WN+MIG +V N     +L  +REM  S +  D  TF  ++  C  L      
Sbjct: 176 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCG 235

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAI 119
             VH L I++       ++ +++ MY+KC  +  A+++FD + ++ DV  WN+MIS  + 
Sbjct: 236 AEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSS 295

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH---MRSRYSIQP 176
           +G + +A  +F +M+  ++ P++ TF+  L AC     +++G   F H   ++S Y I  
Sbjct: 296 NGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQG--MFIHATVLKSSYYINV 353

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            + +  A++ +  R G + EA  +  +M  + D + W ++LS 
Sbjct: 354 FVAN--ALIAMYARFGKMGEAANIFYNMD-DWDTISWNSMLSG 393



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 108/220 (49%), Gaps = 3/220 (1%)

Query: 1   MPDK-DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           MP+K DVVSWNSMI  +  N +  EALR F EM  + + P+ +TF + +  C     +  
Sbjct: 277 MPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQ 336

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             ++H  +++    +N  ++ ALI MY++ GK+  A  +F  +   D   WN+M+SG   
Sbjct: 337 GMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQ 396

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +GL  +A   + +M      PD +  + ++ A +  G    G +   +   +  +   L+
Sbjct: 397 NGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAM-KNGLDSDLQ 455

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              ++VD+  +   ++    +   M  + DVV W  +++ 
Sbjct: 456 VGNSLVDMYAKFCSMKYMDCIFDKMP-DKDVVSWTTIIAG 494



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 114/218 (52%), Gaps = 3/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D D +SWNSM+ GFV+N  + EAL+F+ EM  +  +PD     S+I   AR G   + 
Sbjct: 379 MDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNG 438

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++  ++ +  +  +L+DMY+K   ++    +FD +   DV  W  +I+G A +
Sbjct: 439 MQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQN 498

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  + A  +F ++++  +  D +    +L ACS   L+   ++   ++  +      L++
Sbjct: 499 GSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQN 558

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
              +VD+ G  G+++ A  +   +  + DVV W +++S
Sbjct: 559 --GIVDVYGECGNVDYAARMFELIEFK-DVVSWTSMIS 593



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 94/212 (44%), Gaps = 17/212 (8%)

Query: 18  RNARFDEALRFFREMLSSKVEPDKFT----FASVIYGCARLGALNHAYWVHNLIIEKKIE 73
           +    +EA +   ++ +++  P +F+    ++SV+  C    AL+    VH  +I     
Sbjct: 88  KRGSVNEAFQSLTDLFANQ-SPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNAL 146

Query: 74  LNFI-LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTK 132
            N + LS  L+ MY KCG +  A+++FD +    +  WNAMI     +G    +  ++ +
Sbjct: 147 FNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYRE 206

Query: 133 MEMFNVLPDSITFLGLLTACS-----HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDL 187
           M +  +  D+ TF  +L AC       CG    G    +   S   +        ++V +
Sbjct: 207 MRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVA------NSIVGM 260

Query: 188 LGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +   +  A  L   M  + DVV W +++SA
Sbjct: 261 YTKCNDLNGARQLFDRMPEKEDVVSWNSMISA 292



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA-Y 61
           +KD+V W SMI  +  +     A+  FR M    + PD   F +V+Y C+  G +N    
Sbjct: 683 NKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRR 742

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS-VWNAMISGVAIH 120
           ++ ++  E ++E        L+D+  +   ++ A +    ++    + VW A++    IH
Sbjct: 743 FLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIH 802


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 173/424 (40%), Positives = 265/424 (62%), Gaps = 16/424 (3%)

Query: 3   DKDVVSWNSMIGGFVRNAR-------FD------EALRFFREMLSSKVEPDKFTFASVIY 49
           + D+ +WN+M+  + ++A        F+      EAL  F +M  S+++P++ T  ++I 
Sbjct: 168 EPDLATWNTMLAAYAQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALIS 227

Query: 50  GCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV 109
            C+ LGAL+   W H  ++   ++LN  +  AL+DMYSKCG + +A ++FD +   D   
Sbjct: 228 ACSNLGALSQGAWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFC 287

Query: 110 WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169
           +NAMI G A+HG    A  ++  M++ +++PD  T +  + ACSH GLVEEG + F+ M+
Sbjct: 288 YNAMIGGFAVHGHGNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMK 347

Query: 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG 229
             + ++P+LEHYG ++DLLGRAG ++EA   +  M M+P+ ++WR+LL A +    LE+G
Sbjct: 348 GVHGMEPKLEHYGCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLEMG 407

Query: 230 EVAIVNISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGV 286
           E A+ ++  L     G+YVLLSNMY  + RW+  + VR +MK  GV K  G S +E+ G 
Sbjct: 408 EAALKHLIELEPETSGNYVLLSNMYASIGRWNDVKRVRMLMKDHGVDKLPGFSLVEINGA 467

Query: 287 IHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKL 346
           +H+F  GD++HP ++ I   +G + +R    G  P T  VL DV EE+KE  L +HSE+L
Sbjct: 468 MHEFLTGDKAHPFSKEIYSKIGEINRRLLEYGHKPRTSEVLFDVEEEDKEDFLSYHSERL 527

Query: 347 ALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSC 406
           A+A+ ++ +S    IRI KNLR+C DCH+  K+IS   +R IIVRDR RFH F+ G CSC
Sbjct: 528 AIAFALIASSSSMPIRIIKNLRVCGDCHAITKLISAAYQRDIIVRDRNRFHHFKDGSCSC 587

Query: 407 GDYW 410
            DYW
Sbjct: 588 LDYW 591



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 91/177 (51%), Gaps = 16/177 (9%)

Query: 1   MPDKDVVSWNSMIGGFVRNA-RFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALN 58
           +P+  +  +N++I     ++ +   A   +  +L+ K ++P+ FTF S+   CA    L 
Sbjct: 62  IPNPTLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACASHPWLQ 121

Query: 59  HAYWVHNLIIE-KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
           H   +H  +++  +   +  +  +L++ Y+K GK+ +++ +FD +   D++ WN M++  
Sbjct: 122 HGPPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAY 181

Query: 118 AIHG-------------LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG 161
           A                ++ +A  +F  M++  + P+ +T + L++ACS+ G + +G
Sbjct: 182 AQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQG 238



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 10/127 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + D+D   +N+MIGGF  +   ++AL  +R M    + PD  T    ++ C+  G +   
Sbjct: 280 LSDRDTFCYNAMIGGFAVHGHGNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEG 339

Query: 61  YWVHNLI-----IEKKIELNFILSAALIDMYSKCGKIQMAKE-VFDTVQRNDVSVWNAMI 114
             +   +     +E K+E        LID+  + G+++ A+E + D   + +  +W +++
Sbjct: 340 LEIFESMKGVHGMEPKLE----HYGCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLL 395

Query: 115 SGVAIHG 121
               +HG
Sbjct: 396 GAAKLHG 402


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 182/410 (44%), Positives = 253/410 (61%), Gaps = 4/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K+VVSWN++I G  R    +  +R F +ML    EP  FT++SV   CA  G+L    WV
Sbjct: 270 KNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWV 329

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I+   +    +   LIDMY+K G I+ AK+VF  + + D+  WN++ISG A HGL 
Sbjct: 330 HAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLG 389

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
           A+A  +F +M    V P+ ITFL +LTACSH GL++EG+ YF+ M+ ++ I+ Q+ H+  
Sbjct: 390 AEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMK-KHKIEAQVAHHVT 448

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM--- 240
           +VDLLGRAG + EA   I  M ++P   VW ALL +CR  K ++LG  A   I  L    
Sbjct: 449 VVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHD 508

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G +VLLSN+Y    R   A  VR++MK+ GV+K    SW+E+   +H F A D SHP  
Sbjct: 509 SGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMR 568

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + I ++   +  + K  G++P T  VL  ++++++E  L +HSEKLALA+ +LKT PG  
Sbjct: 569 EEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLT 628

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IRI KN+RIC DCHS  K  SR+L R IIVRD  RFH F  G+CSC DYW
Sbjct: 629 IRIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 678



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 117/219 (53%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD+VSW  +I G+ ++ +  EAL  F +ML    +P++FT +S++       + +H 
Sbjct: 166 MPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHG 225

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++   ++N  + ++L+DMY++   ++ AK +F+++   +V  WNA+I+G A  
Sbjct: 226 RQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARK 285

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G       +F +M      P   T+  + TAC+  G +E+G+    H+  +   QP    
Sbjct: 286 GEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHV-IKSGGQPIAYI 344

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              ++D+  ++G I++A  +   +  + D+V W +++S 
Sbjct: 345 GNTLIDMYAKSGSIKDAKKVFRRLVKQ-DIVSWNSIISG 382



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 90/183 (49%), Gaps = 2/183 (1%)

Query: 37  VEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAK 96
           +EP++  ++ ++  C  L  L     +H  I     E + +L   +++MY+KCG ++ A+
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQ 160

Query: 97  EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
           ++FD +   D+  W  +ISG +  G A++A A+F KM      P+  T   LL A S  G
Sbjct: 161 DLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA-SGTG 219

Query: 157 LVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRAL 216
             +   +       +Y     +    +++D+  R  H+ EA  +  S+  + +VV W AL
Sbjct: 220 PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAK-NVVSWNAL 278

Query: 217 LSA 219
           ++ 
Sbjct: 279 IAG 281


>gi|77548549|gb|ABA91346.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 624

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 163/420 (38%), Positives = 259/420 (61%), Gaps = 12/420 (2%)

Query: 3   DKDVVSWNSMIGGFVR---------NARFDEALRFFREMLSSKVEPDKFTFASVIYGCAR 53
           + D+ +WN+++  + R         ++  D  L  F  MLS  ++P++ T  +VI  C  
Sbjct: 205 NPDLPAWNALLSAYARLRARDVACASSAADAILEMFVRMLSLAIKPNEITLVAVIGACGE 264

Query: 54  LGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAM 113
           LGA++H  W H   +++++ +N I++ AL++MY+ CG++ +A++VF      D   +NAM
Sbjct: 265 LGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAM 324

Query: 114 ISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
           + G+A+HG    A ++F +M    V  D +T L ++ AC+H GLV+EG  YFD M   + 
Sbjct: 325 LHGLAVHGHGRAALSLFDRMHGEGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFG 384

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI 233
           I+P +EHYG MVD+L RAG + +A  LI  M + P+  ++R+L+ AC    +LELG+  I
Sbjct: 385 IEPSIEHYGCMVDMLSRAGRLNDAEKLIHGMPIVPNAAIYRSLIRACGIHGKLELGKKMI 444

Query: 234 VNISRLM---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQF 290
             + RL     G++VL+SN Y    RWD A+  R+ MK  G+ KS G S++++ GV+H+F
Sbjct: 445 AELMRLEPDDSGNHVLISNFYATTNRWDDAKKARKEMKSMGIDKSPGSSFVDINGVLHEF 504

Query: 291 KAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAY 350
             GD++HP ++ I  ++  +  R    G   +T   L DV EE+K   L +HSE+LA+A+
Sbjct: 505 LVGDKTHPASKEIYAMVEDIETRLSECGHRSSTSSALFDVEEEDKADALSYHSERLAIAF 564

Query: 351 GILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            ++ ++PG  IRI KNLR+C DCH   K++SR+  R I++RDR RFH F  G+CSCGD+W
Sbjct: 565 ALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 624



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 9/146 (6%)

Query: 25  ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84
           AL F        + P+ FT+  +        AL  A      +       + +L AAL+D
Sbjct: 126 ALLFLSSSSPPLLRPNAFTYPPLFRAAPPALALALATHSIKFLGAHAASCDRVLGAALLD 185

Query: 85  MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG--------VAIHGLAADAS-AIFTKMEM 135
           ++++CG+I   ++VFD +   D+  WNA++S         VA    AADA   +F +M  
Sbjct: 186 VFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADAILEMFVRMLS 245

Query: 136 FNVLPDSITFLGLLTACSHCGLVEEG 161
             + P+ IT + ++ AC   G V  G
Sbjct: 246 LAIKPNEITLVAVIGACGELGAVSHG 271


>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 178/416 (42%), Positives = 269/416 (64%), Gaps = 9/416 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNH 59
           MP  D+ SWN++I GF + +R  +A+  F+ M +   + P+  T    +  C++LGAL  
Sbjct: 164 MPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKE 223

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV--WNAMISGV 117
              VH  I+E+K+  N  +   +IDMY+KCG +  A  VF+ + R D S+  WN MI   
Sbjct: 224 GESVHKYIVEEKLNSNVQVCNVVIDMYAKCGSMDKAYWVFENM-RCDKSLITWNTMIMAF 282

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           A+HG    A  +F K+    + PD++++L +L AC+H GLVE+G K F+ M  R  ++P 
Sbjct: 283 AMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQR-GLEPN 341

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IV 234
           ++HYG+MVDLLGRAG ++EAY +++S+   P++V+W+ LL ACRT+  +E+ E+A   +V
Sbjct: 342 IKHYGSMVDLLGRAGRLKEAYDIVSSLPF-PNMVLWQTLLGACRTYGDVEMAELASRKLV 400

Query: 235 NISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294
            +  +  GD+VLLSN+Y   +RWD    VR+ M+++ V+K+ G S++E+ G +++F  GD
Sbjct: 401 EMGFISCGDFVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGD 460

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
           +SH   + I   L  +  R K+ G+   T  VL D+ +E+KE  L +HSEKLA+A+G+  
Sbjct: 461 QSHSSCREIYAKLDEINLRIKAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTC 520

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T  GT I++ KNLRIC DCH  IK+IS++  R IIVRDR RFHRF+ GLCSC DYW
Sbjct: 521 TEEGTPIQVIKNLRICGDCHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 115/222 (51%), Gaps = 4/222 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKV--EPDKFTFASVIYGCARLGALN 58
           +P      WN++I G   ++    A+ ++R M +S      D  T +  +  CAR  A +
Sbjct: 61  IPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARS 120

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
            A  +H+ ++      + +L   L+D Y+K G + +A+++FD + + D++ WNA+I+G A
Sbjct: 121 EAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFA 180

Query: 119 IHGLAADASAIFTKMEM-FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
                ADA   F +M++  N+ P+++T  G L ACS  G ++EG     ++     +   
Sbjct: 181 QGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEE-KLNSN 239

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++    ++D+  + G +++AY +  +M  +  ++ W  ++ A
Sbjct: 240 VQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMA 281


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 169/410 (41%), Positives = 253/410 (61%), Gaps = 23/410 (5%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDV  W+ +I  +   +  D+    F EML++ V+P+  T  S++  CA  GAL+   W 
Sbjct: 356 KDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAGALDLGKWT 415

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  I    +E++ IL  ALI+MY+KCG + +A+ +F+   + D+ +WN M++G ++HG  
Sbjct: 416 HAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMWNTMMAGFSMHGCG 475

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F++ME   V P+ ITF+ +  ACSH GL                    +EHYG 
Sbjct: 476 KEALELFSEMESHGVEPNDITFVSIFHACSHSGL--------------------MEHYGC 515

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
           +VDLLGRAGH++EA+ +I +M M P+ ++W ALL+AC+  K L LGEVA   I+ +    
Sbjct: 516 LVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAACKLHKNLALGEVAARKILELDPQN 575

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G  VL SN+Y   KRW+   +VRE M   G++K  G SW+E++G +H FK+GD++  + 
Sbjct: 576 CGYSVLKSNIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVSGSVHHFKSGDKACTQT 635

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
             + +++  +  + +  G+ P T  VL+++ EEEKE  L +HSEKLA A+G++ T+PGT 
Sbjct: 636 TKVYEMVTEMCIKLRESGYTPNTAAVLLNIDEEEKESALSYHSEKLATAFGLISTAPGTP 695

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IRI KNLRIC DCH+  K++S++  R IIVRDR RFH F  G CSC  YW
Sbjct: 696 IRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCMGYW 745



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 116/219 (52%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  + VVSW  MI G +R+ R DE  + F  ML  K+ P++ T  S+I  C  +G L+  
Sbjct: 252 LSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLG 311

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W H  ++     ++  L  ALIDMY KCG++  A+ +F+ V++ DV +W+ +IS  A  
Sbjct: 312 KWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHV 371

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                   +F +M   +V P+++T + LL+ C+  G ++ G K+     +R+ ++  +  
Sbjct: 372 SCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAGALDLG-KWTHAYINRHGLEVDVIL 430

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++++  + G +  A  L     M+ D+ +W  +++ 
Sbjct: 431 ETALINMYAKCGDVTIARSLFNE-AMQRDIRMWNTMMAG 468



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 112/223 (50%), Gaps = 8/223 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++DVVSW +M+G +VR+  F EALR  REM    V+       S+I     L  +   
Sbjct: 149 MPERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSG 208

Query: 61  YWVHNLII----EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
             VH  I+    ++K+E++  ++ ALIDMY K G +  A+ +FD + +  V  W  MI+G
Sbjct: 209 RAVHGYIVRNVGDEKMEVS--MTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAG 266

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
                   + +  F +M    + P+ IT L L+T C   G ++ G K+F     R     
Sbjct: 267 CIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLG-KWFHAYLLRNGFGM 325

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            L    A++D+ G+ G +  A  L   +  + DV +W  L+SA
Sbjct: 326 SLALVTALIDMYGKCGQVGYARALFNGVK-KKDVKIWSVLISA 367



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/224 (20%), Positives = 95/224 (42%), Gaps = 3/224 (1%)

Query: 8   SWNSMIGGFVRNARFDEALRFFREMLSSKVEP-DKFTFASVIYGCARLGALNHAYWVHNL 66
           ++N +I  +  N     +   +  M S+     D F   S++  CA+  + +    +H  
Sbjct: 54  NYNLLISSYTNNHLPQASFNCYLHMRSNDAAALDNFILPSLLKACAQASSGDLGRELHGF 113

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
             +     +  +  AL++MY KCG +  A+ VFD +   DV  W  M+          +A
Sbjct: 114 AQKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKAFGEA 173

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLEHYGAMV 185
             +  +M+   V    +  + L+    +   ++ GR    ++ R+    + ++    A++
Sbjct: 174 LRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALI 233

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG 229
           D+  + G +  A  L   ++ +  VV W  +++ C    RL+ G
Sbjct: 234 DMYCKGGCLASAQRLFDRLS-KRSVVSWTVMIAGCIRSCRLDEG 276


>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 181/422 (42%), Positives = 273/422 (64%), Gaps = 14/422 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++ VSWN MI  + +   FD ALR F EM     +PD +T  SVI  CA LGAL+  
Sbjct: 192 MSERNEVSWNIMIDSYAKGGIFDTALRMFGEMQRVH-DPDGYTMQSVISACAGLGALSLG 250

Query: 61  YWVHNLIIEKKIELNFI----LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
            WVH  I+ KK + N +    ++  L+DMY K G++++AK+VF+++   D++ WN+MI G
Sbjct: 251 LWVHAYIL-KKCDKNMVDDVLVNTCLVDMYCKSGELEIAKQVFESMAFRDLNAWNSMILG 309

Query: 117 VAIHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           +A+HG A  A   + +M ++  ++P+SITF+G+L+AC+H G+V+EG  +FD M   Y+++
Sbjct: 310 LAMHGEAKAALNYYVRMVKVEKIVPNSITFVGVLSACNHRGMVDEGIVHFDMMTKEYNVE 369

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA-CRTFKRLELGEVAIV 234
           P+LEHYG +VDL  RAG I EA  L++ M+++PD V+WR+LL A C+ +  +EL E    
Sbjct: 370 PRLEHYGCLVDLFARAGRINEALNLVSEMSIKPDAVIWRSLLDACCKQYASVELSEEMAK 429

Query: 235 NI-----SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQ 289
            +     S    G YVLLS +Y    RW+    +R++M +KGV K  G S +E+ GV+H+
Sbjct: 430 QVFESEGSVCSSGVYVLLSKVYASACRWNDVGLLRKLMSEKGVTKEPGCSIIEIDGVVHE 489

Query: 290 FKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPA-TELVLMDVSEEEKEGNLYHHSEKLAL 348
           F AGD +HP+++ I K++  + ++ +S G+LP  +   ++D   + K   L  HSE+LA+
Sbjct: 490 FFAGDTTHPKSENIYKVVTEIEEKLESIGYLPDYSGAPMVDEVNDGKLNTLRLHSERLAI 549

Query: 349 AYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGD 408
           A+GIL + P   IR+ KNLR+C+DCH   K+ISR+    IIVRDR RFH F+ G CSC D
Sbjct: 550 AFGILNSKPDVPIRVFKNLRVCNDCHRVTKLISRIYNVEIIVRDRARFHHFKDGTCSCMD 609

Query: 409 YW 410
           YW
Sbjct: 610 YW 611



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 111/226 (49%), Gaps = 14/226 (6%)

Query: 2   PDKDVVSWNSMIGGFVRNARFD---EALRFFREMLSSKVE---PDKFTFASVIYGCARLG 55
           P+ +   WN++I  + R+   +   +A+  ++ M++ + +   PD  TF  V+  CA   
Sbjct: 86  PNPNSFMWNTLIRVYARSTNTNHKHKAMELYKTMMTMEEKTAVPDNHTFPIVLKACAYTF 145

Query: 56  ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMI 114
           +L     VH  +++   E +  +  +L+  Y+ CG + +A+++F  + +RN+VS WN MI
Sbjct: 146 SLCEGKQVHAHVLKHGFESDTYICNSLVHFYATCGCLDLAEKMFYKMSERNEVS-WNIMI 204

Query: 115 SGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG---RKYFDHMRSR 171
              A  G+   A  +F +M+  +  PD  T   +++AC+  G +  G     Y      +
Sbjct: 205 DSYAKGGIFDTALRMFGEMQRVHD-PDGYTMQSVISACAGLGALSLGLWVHAYILKKCDK 263

Query: 172 YSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             +   L +   +VD+  ++G +E A  +  SM    D+  W +++
Sbjct: 264 NMVDDVLVN-TCLVDMYCKSGELEIAKQVFESMAFR-DLNAWNSMI 307


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 186/441 (42%), Positives = 264/441 (59%), Gaps = 31/441 (7%)

Query: 1   MPDKDVVSWNSMIGGFVR-----------------NARFD-----------EALRFFREM 32
           M  +D VSW+ M+GGF +                  AR D           E+L  F +M
Sbjct: 421 MCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKM 480

Query: 33  LSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKI 92
               V PDK    +V++ CA+LGA++ A  + + I  KK +L+ IL  A+IDM++KCG +
Sbjct: 481 REEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCV 540

Query: 93  QMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC 152
           + A+E+FD ++  +V  W+AMI+    HG    A  +F  M    +LP+ IT + LL AC
Sbjct: 541 ESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYAC 600

Query: 153 SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
           SH GLVEEG ++F  M   YS++  ++HY  +VDLLGRAG ++EA  LI SMT+E D  +
Sbjct: 601 SHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGL 660

Query: 213 WRALLSACRTFKRLELGEVAIVNISRLM---GGDYVLLSNMYCYLKRWDTAENVREIMKK 269
           W A L ACRT K + L E A  ++  L     G Y+LLSN+Y    RW+     R++M +
Sbjct: 661 WGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQ 720

Query: 270 KGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMD 329
           + ++K  G +W+E+    HQF  GD +HP ++ I ++L SL  + +  G++P T  VL D
Sbjct: 721 RRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHD 780

Query: 330 VSEEEKEGNLYHHSEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVII 389
           V EE K G LY HSEKLA+A+G++ T   T IRI KNLR+C DCH++ K++S +  RVII
Sbjct: 781 VDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVII 840

Query: 390 VRDRIRFHRFEGGLCSCGDYW 410
           VRD  RFH F+ G CSCGDYW
Sbjct: 841 VRDANRFHHFKEGACSCGDYW 861



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 8/222 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D+V+W  MIGG+    + +E+L  F +M    V PDK    +V++ CA+LGA++ A
Sbjct: 219 MQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKA 278

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             + + I  KK +L+ IL  A+IDMY+KCG ++ A+E+FD ++  +V  W+AMI+    H
Sbjct: 279 RIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH 338

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F  M    +LPD IT   LL AC +C  + + R+    + ++ S+   L++
Sbjct: 339 GQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQ----VHAQASVHGMLQN 394

Query: 181 Y---GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                 +V        +++AYGL   M +  D V W  ++  
Sbjct: 395 LIVANKLVHFYSYYRALDDAYGLFDGMCVR-DSVSWSVMVGG 435



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 105/219 (47%), Gaps = 23/219 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D VSW+ M+GGF +   +      FRE++     PD +T   VI  C  L  L   
Sbjct: 139 MCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQ-- 196

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                               AL+DMY KC +I+ A+ +FD +Q  D+  W  MI G A  
Sbjct: 197 -------------------MALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAEC 237

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A ++  +F KM    V+PD +  + ++ AC+  G + + R   D+++ R   Q  +  
Sbjct: 238 GKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQ-RKKFQLDVIL 296

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             AM+D+  + G +E A  +   M  E +V+ W A+++A
Sbjct: 297 GTAMIDMYAKCGCVESAREIFDRME-EKNVISWSAMIAA 334



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 112/247 (45%), Gaps = 30/247 (12%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +K+V+SW++MI  +  + +  +AL  FR MLSS + PDK T AS++Y C     L   
Sbjct: 320 MEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQV 379

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA-- 118
             VH       +  N I++  L+  YS    +  A  +FD +   D   W+ M+ G A  
Sbjct: 380 RQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKV 439

Query: 119 --------------------------IHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC 152
                                       G A ++  +F KM    V+PD +  + ++ AC
Sbjct: 440 GDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFAC 499

Query: 153 SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
           +  G + + R   D+++ R   Q  +    AM+D+  + G +E A  +   M  E +V+ 
Sbjct: 500 AKLGAMHKARTIDDYIQ-RKKFQLDVILGTAMIDMHAKCGCVESAREIFDRME-EKNVIS 557

Query: 213 WRALLSA 219
           W A+++A
Sbjct: 558 WSAMIAA 564



 Score = 41.2 bits (95), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 77/213 (36%), Gaps = 23/213 (10%)

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           N +++  LI  YS    +  A  +FD +   D   W+ M+ G A  G   +    F ++ 
Sbjct: 112 NIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELI 171

Query: 135 MFNVLPDSITFLGLLTACS--------------HCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                PD+ T   ++ AC                C  +E+ R  FD M+ R      L  
Sbjct: 172 RCGARPDNYTLPFVIRACRDLKNLQMALVDMYVKCREIEDARFLFDKMQER-----DLVT 226

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELGEVAIVNIS 237
           +  M+      G   E+  L   M  E   PD V    ++ AC     +    +    I 
Sbjct: 227 WTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQ 286

Query: 238 R-LMGGDYVLLSNMYCYLKRWDTAENVREIMKK 269
           R     D +L + M     +    E+ REI  +
Sbjct: 287 RKKFQLDVILGTAMIDMYAKCGCVESAREIFDR 319


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 177/413 (42%), Positives = 256/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+ D  SW++M+ G+ +N +  E L+  REM +  V  D FT ASV+  C  LG L+  
Sbjct: 128 MPEPDSASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLG 187

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH+ I ++ ++++ +L  AL+ MYSKCG +  A +VF  +   DV+ W+ MI+G AIH
Sbjct: 188 KWVHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIH 247

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F  M+   ++P+ +TF  +L+A SH GLVE+G + F+ M + Y I PQ++H
Sbjct: 248 GHDEKALQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKH 307

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE---VAIVNIS 237
           YG MVDL  RAG +  A+  I +M +EP+VV+WR LL AC+T     LGE     I+ + 
Sbjct: 308 YGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKGLGEHISRKILKLD 367

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                +YV +SN+Y  L RW +   VR +MK+K  +K  G S +E+  ++H+F  G+ SH
Sbjct: 368 PSSPENYVFVSNVYASLGRWSSVCQVRSLMKEKAPKKQHGWSSIEINFMVHKFIMGEESH 427

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I  +L  + ++ K  G + +T  VL D+ EEEKE  L  HSE+LA+AYG+L T  
Sbjct: 428 PKREKIYGMLHQMARKLKQVGHVASTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPN 487

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G+ IRI KNLR C DCH  IK+IS +  R II+RDR+ FH F    CSC DYW
Sbjct: 488 GSPIRIVKNLRACRDCHEVIKLISEVYNREIILRDRVCFHHFRERGCSCNDYW 540



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 102/211 (48%), Gaps = 2/211 (0%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           WN++I G+  +     A+  +++M    + P+ +TF  V+  C +L  L     +H+ I+
Sbjct: 35  WNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVLNACCKLLRLCEGQELHSQIV 94

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
           +  ++    L   LI +Y+ CG +  A  +FD +   D + W+ M+SG + +G A +   
Sbjct: 95  KAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYSQNGQAVETLK 154

Query: 129 IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLL 188
           +  +M+  NV  D+ T   ++  C   G+++ G K+      +  ++  +    A+V + 
Sbjct: 155 LLREMQAENVSSDAFTLASVVGVCGDLGVLDLG-KWVHSYIDKEGVKIDVVLGTALVGMY 213

Query: 189 GRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            + G ++ A  +   M  E DV  W  +++ 
Sbjct: 214 SKCGSLDNALKVFQGMA-ERDVTTWSIMIAG 243



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 2/130 (1%)

Query: 90  GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
           G +  A  +F      ++ +WN +I G +I      A A++  M +  + P+S TF  +L
Sbjct: 15  GHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVL 74

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
            AC     + EG++    +  +  +  +      ++ L    G ++ A  +   M  EPD
Sbjct: 75  NACCKLLRLCEGQELHSQI-VKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMP-EPD 132

Query: 210 VVVWRALLSA 219
              W  ++S 
Sbjct: 133 SASWSTMVSG 142


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 175/413 (42%), Positives = 254/413 (61%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  K+ VSWN++I GF R    + AL  F EM  +  E   FT++S+  G A +GAL   
Sbjct: 213 LDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQG 272

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH  +++ + +L   +   ++DMY+K G +  A++VF+ V   D+  WN+M++  A +
Sbjct: 273 KWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQY 332

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A + F +M    +  + ITFL +LTACSH GLV+EG+ YFD M   Y+++P++EH
Sbjct: 333 GLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFD-MIKEYNLEPEIEH 391

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  +VDLLGRAG +  A   I  M MEP   VW ALL+ACR  K  ++G+ A  ++ +L 
Sbjct: 392 YVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLD 451

Query: 241 ---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G  VLL N+Y     WD A  VR++MK  GV+K    SW+E+   +H F A D +H
Sbjct: 452 PDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTH 511

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P A+ I K+   +  + + EG++P  + VL+ V E+E+E NL +HSEK+ALA+ +++   
Sbjct: 512 PRAEEIYKMWDEISMKIRKEGYVPDMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPA 571

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KN+RIC DCHS  K IS++  R I+VRD  RFH F  G CSCGDYW
Sbjct: 572 GATIRIMKNIRICGDCHSAFKYISKVFEREIVVRDTNRFHHFSNGSCSCGDYW 624



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 7/240 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD+VSW S+I G+ +N    EA+     ML  + +P+ FTFAS++            
Sbjct: 112 MRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIG 171

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L ++     +  + +AL+DMY++CGK+ MA  VFD +   +   WNA+ISG A  
Sbjct: 172 GQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARK 231

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLE 179
           G    A  +F +M+         T+  + +  +  G +E+G+    HM +SR  +   + 
Sbjct: 232 GDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVG 291

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           +   M+D+  ++G + +A  +   + +  D+V W ++L+A   F +  LG+ A+ +   +
Sbjct: 292 N--TMLDMYAKSGSMIDARKVFERV-LNKDLVTWNSMLTA---FAQYGLGKEAVSHFEEM 345



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 7/207 (3%)

Query: 34  SSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQ 93
           S ++ P    + + I  CA+   L+ A  +H  +   + E +  L  +LI +Y KCG + 
Sbjct: 44  SGELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVV 103

Query: 94  MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
            A +VFD +++ D+  W ++I+G A + + A+A  +   M      P+  TF  LL A  
Sbjct: 104 EAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAG 163

Query: 154 HCGLVEEGRKYFDHMRSRYSIQPQLEHYG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
                + G     H  +      +  + G A++D+  R G ++ A  +   +  + + V 
Sbjct: 164 --AYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSK-NGVS 220

Query: 213 WRALLSACRTFKRLELGEVAIVNISRL 239
           W AL+S    F R   GE A++  + +
Sbjct: 221 WNALISG---FARKGDGETALMVFAEM 244


>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 179/413 (43%), Positives = 247/413 (59%), Gaps = 13/413 (3%)

Query: 11  SMIGGFVRNARFDEALRFFRE----------MLSSKVEPDKFTFASVIYGCARLGALNHA 60
           S++  +V+       L+ F E          +L + V P+  T  S +  C ++GAL   
Sbjct: 178 SLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNGVRPNDLTVVSALLACTKIGALQVG 237

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +HN +     +LN  +  AL+DMY+KCG I+ A  VF   +  D+  W+ MI G AIH
Sbjct: 238 ERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIH 297

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A   F KM+   + PD + FL +LTACSH G V++G  +F+ MR  YSI+P ++H
Sbjct: 298 GCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKH 357

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  +VDLLGRAG ++EA   I SM + PD V+W AL  ACR  K +E+ E+    + +L 
Sbjct: 358 YTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLE 417

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YV LSN+Y  + RW+  E VR +MK +GV K  G S++E+ G +H F AGD +H
Sbjct: 418 PKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAH 477

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
             A+ I   L  +    K EG++P T  VL ++ EEEKE  L  HSEKLALA+G++ T+P
Sbjct: 478 VRAEEISLKLEEITASAKQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAP 537

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G+ IRI KNLR+C DCHS +K  S+L RR II+RD  RFH F+ G CSCGDYW
Sbjct: 538 GSTIRIVKNLRVCGDCHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 590



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 98/217 (45%), Gaps = 31/217 (14%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           ++  +N++I G   N+RF+ ++  F  ML   + PD+ T   V+   A L  +     +H
Sbjct: 102 NLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLH 161

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD-TVQRN---DVSVWNAMISGVAIH 120
             +++  +E +  +  +L+DMY K G++    ++FD + QRN    + +WN         
Sbjct: 162 GGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNG-------- 213

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                            V P+ +T +  L AC+  G ++ G +  +++ S    Q     
Sbjct: 214 -----------------VRPNDLTVVSALLACTKIGALQVGERIHNYLSSN-GFQLNRGI 255

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             A+VD+  + G+I+ A  +    T   D++ W  ++
Sbjct: 256 GTALVDMYAKCGNIKSASRVFVE-TKGKDLLTWSVMI 291



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY-W 62
           KD+++W+ MI G+  +  FD+AL+ F +M S+ + PD+  F +++  C+  G ++    +
Sbjct: 282 KDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNF 341

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN-DVSVWNAMISGVAIH 120
             ++ ++  IE        ++D+  + G++  A     ++  N D  +W A+      H
Sbjct: 342 FESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAH 400


>gi|296085287|emb|CBI29019.3| unnamed protein product [Vitis vinifera]
          Length = 408

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 185/414 (44%), Positives = 260/414 (62%), Gaps = 10/414 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++++VSWNSM+ GFV+    +EA   F EM       D  ++ S++   A+ G  N A
Sbjct: 1   MPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCR----DVVSWNSMLACYAQCGKPNEA 56

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             + + +  + + +N I+  AL+DMY+KCGKI +A +VF+ ++  DV  WN +I+G+AI 
Sbjct: 57  LALFDQM--QAVGVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIL 114

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M+   V P+ ITF+ +L+ACSH G+V+EG+K  D M S Y I+P++EH
Sbjct: 115 GHVKEAQQLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEH 174

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG ++DLL RAG +EEA  LI +M MEP+     ALL  CR     ELGE+    ++N+ 
Sbjct: 175 YGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLEGCRIHGNFELGEMVGKRLINLQ 234

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y+LLSN+Y   K+WD A  VR +MK  G+ K  G S +EL G++H+F AGD SH
Sbjct: 235 PCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSH 294

Query: 298 PEAQAIDKILGSLIQRTKSE-GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           PE+  I + L  +  R KS  G+   T   L+D+ EE+KE  L  HSEKLA+AYG+L   
Sbjct: 295 PESNKIYEKLNEIHTRLKSAIGYSADTGNGLLDMEEEDKEHALAVHSEKLAIAYGLLHLD 354

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
               IRI KNLR+C DCH   K+IS++    IIVRDR RFH FE G CSC D+W
Sbjct: 355 SKEAIRIVKNLRVCRDCHHVTKLISKVYGGEIIVRDRNRFHHFEDGECSCLDFW 408


>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
 gi|194690792|gb|ACF79480.1| unknown [Zea mays]
          Length = 617

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 174/413 (42%), Positives = 255/413 (61%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D V+W++MI G++   R  EAL  F EMLS+     + T  SV+  CA++G L+  
Sbjct: 206 MPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRG 265

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH  +  + ++++  L  AL+DMYSKCG +  A EVF+++   +V  W + +SG+A++
Sbjct: 266 KWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMN 325

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G+  +   +F +ME   + P+ ++F+ +L  CS  GLV+EGR  FD M  +Y + P  EH
Sbjct: 326 GMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM-DKYGVDPWPEH 384

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI---VNIS 237
           YG MVDL GRAG +++A   I  M MEP   VW ALL+A R    ++LG+ A+   + I 
Sbjct: 385 YGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIE 444

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 +V LSN+Y   + W     VR +MK KGV+K  G S +E+ G +H+F  G R H
Sbjct: 445 SENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLH 504

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    I+ +L  + +R + +G+   T  VL D+ EEEKEG +  HSEKLALA+G++    
Sbjct: 505 PRYNEIELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEKLALAFGLIVLPE 564

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             EIRI KNLR+C DCH +IK++S++  R I++RDR RFH F+GG CSC DYW
Sbjct: 565 DVEIRIVKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 617



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 79/163 (48%), Gaps = 12/163 (7%)

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           + +   A++   +  G +  A+++FD + + D   W+AMI+G    G + +A  +F +M 
Sbjct: 179 DVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEML 238

Query: 135 MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194
                    T + +LTAC+  G ++ G+    ++RSR  +Q  ++   A+VD+  + G +
Sbjct: 239 SAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSR-GMQMSIKLGTALVDMYSKCGAV 297

Query: 195 EEAYGLITSMTMEPDVVVWRALLSA----------CRTFKRLE 227
             A  +  SM  E +V  W + +S            + FKR+E
Sbjct: 298 VTAMEVFESMA-ERNVYTWTSAVSGLAMNGMGTECLQLFKRME 339


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 172/413 (41%), Positives = 253/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D ++WN+MI G+ +     EAL  F  M    V+ +     SV+  C +LGAL+  
Sbjct: 200 MPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQG 259

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W H+ I   KI++   L+  L+D+Y+KCG ++ A EVF  ++  +V  W++ ++G+A++
Sbjct: 260 RWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMN 319

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G       +F+ M+   V P+++TF+ +L  CS  G V+EG+++FD MR+ + I+PQLEH
Sbjct: 320 GFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEH 379

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG +VDL  RAG +E+A  +I  M M+P   VW +LL A R +K LELG +A   ++ + 
Sbjct: 380 YGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELE 439

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y     WD   +VR+ MK KGVRK  G S +E+ G +H+F  GD+SH
Sbjct: 440 TANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSH 499

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+   ID +   + +R +  G+   T  V+ D+ EEEKE  L  HSEK A+A+GI+    
Sbjct: 500 PKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKE 559

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IRI KNLR+C DCH    MIS++  R IIVRDR RFH F+ G CSC  +W
Sbjct: 560 DVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 109/243 (44%), Gaps = 35/243 (14%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSS--KVEPDKFTFASVIYGCARLGALNHAYWVHNLI 67
           NSMI    ++   +++  F+R +LSS   ++PD +T   ++  C  L        VH + 
Sbjct: 75  NSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMT 134

Query: 68  IEKKIE-------------------------------LNFILSAALIDMYSKCGKIQMAK 96
           I +  +                                +F+   A++   ++CG +  A+
Sbjct: 135 IRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFAR 194

Query: 97  EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
           ++F+ +   D   WNAMISG A  G + +A  +F  M++  V  + +  + +L+AC+  G
Sbjct: 195 KLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLG 254

Query: 157 LVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRAL 216
            +++GR    ++  R  I+  +     +VDL  + G +E+A  +   M  E +V  W + 
Sbjct: 255 ALDQGRWAHSYIE-RNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGME-EKNVYTWSSA 312

Query: 217 LSA 219
           L+ 
Sbjct: 313 LNG 315


>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 558

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 184/414 (44%), Positives = 252/414 (60%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNH 59
           M ++D VSW+++I  F+ N    EAL  F +M L  KV PD+ T  SVI   + LG L  
Sbjct: 145 MSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLEL 204

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             WV   I    + ++  L  ALIDM+S+CG I  +  VF+ +   +V  W A+I+G+ +
Sbjct: 205 GRWVRAFIGRLGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGV 264

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG + +A A+F  M    V PD +TF G+L ACSH GLV+EG   F+ +R  Y + P L+
Sbjct: 265 HGRSTEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYRMDPLLD 324

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE---VAIVNI 236
           HYG MVD+LGRAG + EAY  +  M M+P+ ++WR LL AC     L L E     I  I
Sbjct: 325 HYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGACVNHNNLGLAEKVKAKISKI 384

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
           S    GD VLLSN+Y    RW    ++R  M++K + K  G S + +   IH+F +GD S
Sbjct: 385 SSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSSINVDQTIHEFVSGDNS 444

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+++ I K L S+I   ++ G++  T+ VL D+ EEE+E +L +HSEKLA+A+ IL   
Sbjct: 445 HPQSEDITKFLSSIIGDLRNRGYMMQTKNVLHDIEEEEREHSLSYHSEKLAVAFAILSMK 504

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
               IRI KNLRIC+DCHS++K IS    R II+RDR RFH FE GLCSC DYW
Sbjct: 505 DKRTIRIMKNLRICYDCHSFMKHISVRFERKIIIRDRNRFHHFEKGLCSCHDYW 558



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 144/280 (51%), Gaps = 21/280 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARF--DEALRFFREMLSSKVEPDKFTFASVIYGCARLGALN 58
           +P  D +++N++I     ++RF    +L +F  M S+ +  D FTF  V+  C+RL    
Sbjct: 48  IPSPDTIAYNTIIRS---HSRFFPSHSLFYFFSMRSNGIPLDNFTFPFVLKACSRLQINL 104

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
           H   +H+LI++  ++ +  +  ALI +Y  CG ++MA +VFD +   D   W+ +I+   
Sbjct: 105 H---LHSLIVKYGLDSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFL 161

Query: 119 IHGLAADASAIFTKMEMFN-VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
            +G A++A  +F KM++ + V+PD +T L +++A SH G +E GR +      R  +   
Sbjct: 162 NNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGR-WVRAFIGRLGLGVS 220

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
           +    A++D+  R G I+E+  +   M +  +V+ W AL++      R     +A+ +  
Sbjct: 221 VALGTALIDMFSRCGSIDESIVVFEKMAVR-NVLTWTALINGLGVHGR-STEALAMFHSM 278

Query: 238 RLMG--GDYVLLSNMYCYLKR-------WDTAENVREIMK 268
           R  G   DYV  S +             WD  E++R++ +
Sbjct: 279 RKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYR 318


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 180/414 (43%), Positives = 250/414 (60%), Gaps = 6/414 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M   D+V WNS+IGGF +N+  DE L  ++ M  +    D+ T  SV+  C  L  L   
Sbjct: 175 MITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELG 234

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD-TVQRNDVSVWNAMISGVAI 119
             VH  ++  K + + IL+ AL+DMY KCG ++ A  +F   +   DV  W+ MI+G+A 
Sbjct: 235 RQVHVHVL--KYDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQ 292

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G +ADA  +F  M+     P+ IT LG+L ACSH GLV +G  YF  M+  + I P  E
Sbjct: 293 NGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGRE 352

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HYG ++DLLGRAG ++EA  LI  M  EPD V WR LL ACR  K ++L   A   I +L
Sbjct: 353 HYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKL 412

Query: 240 M---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G Y+LLSN+Y   ++W+    VR  M+ +GV+K  G SW+E++  +H F  GD S
Sbjct: 413 DPADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNS 472

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP  + I + L  LIQR    G++P T  VL D+  E+ E +L +HSEKLA+ +G++   
Sbjct: 473 HPRIEEIKRELSQLIQRLMRLGYVPDTNFVLQDLEGEQMEDSLQYHSEKLAIVFGLMSLP 532

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
               I I KNLRIC DCH + K++S+L  RVI++RD IR+H F GG+CSCGDYW
Sbjct: 533 NQKTIHIRKNLRICGDCHIFAKLVSQLENRVIVIRDPIRYHHFRGGVCSCGDYW 586



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 117/219 (53%), Gaps = 6/219 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPD++VVSW +MI  +  +    +AL F   ML   V P+ +T++SV+  C  L  L   
Sbjct: 77  MPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNLRQ- 135

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I++  +E +  + +ALID YSK G+   A  VF+ +   D+ VWN++I G A +
Sbjct: 136 --LHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQN 193

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +   ++ +M+  + + D  T   +L AC+   L+E GR+   H+  +Y     L +
Sbjct: 194 SDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVL-KYDQDLILNN 252

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++D+  + G +E+A  L T M  E DV+ W  +++ 
Sbjct: 253 --ALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAG 289



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 8/220 (3%)

Query: 26  LRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM 85
           ++    M  +++  D  T++ +I  C   GA+  A  VH  +     E    L   LI+M
Sbjct: 1   MKAMEAMHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINM 60

Query: 86  YSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145
           Y K G +  A+ +FD +   +V  W  MIS  +   L   A      M    V P+  T+
Sbjct: 61  YVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTY 120

Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
             +L AC   GL+   + +   +  +  ++  +    A++D   + G   +A  +   M 
Sbjct: 121 SSVLRACD--GLLNLRQLHGSIL--KVGLESDVFVRSALIDTYSKLGEQHDALNVFNEM- 175

Query: 206 MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYV 245
           +  D+VVW +++     F +   G+  +    R+   D+V
Sbjct: 176 ITGDLVVWNSIIGG---FAQNSDGDETLHLYKRMKRADFV 212


>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
          Length = 1822

 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 174/413 (42%), Positives = 255/413 (61%), Gaps = 4/413 (0%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            MP +D V+W++MI G++   R  EAL  F EMLS+     + T  SV+  CA++G L+  
Sbjct: 1411 MPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRG 1470

Query: 61   YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             WVH  +  + ++++  L  AL+DMYSKCG +  A EVF+++   +V  W + +SG+A++
Sbjct: 1471 KWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMN 1530

Query: 121  GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            G+  +   +F +ME   + P+ ++F+ +L  CS  GLV+EGR  FD M  +Y + P  EH
Sbjct: 1531 GMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM-DKYGVDPWPEH 1589

Query: 181  YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI---VNIS 237
            YG MVDL GRAG +++A   I  M MEP   VW ALL+A R    ++LG+ A+   + I 
Sbjct: 1590 YGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIE 1649

Query: 238  RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                  +V LSN+Y   + W     VR +MK KGV+K  G S +E+ G +H+F  G R H
Sbjct: 1650 SENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLH 1709

Query: 298  PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            P    I+ +L  + +R + +G+   T  VL D+ EEEKEG +  HSEKLALA+G++    
Sbjct: 1710 PRYNEIELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEKLALAFGLIVLPE 1769

Query: 358  GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              EIRI KNLR+C DCH +IK++S++  R I++RDR RFH F+GG CSC DYW
Sbjct: 1770 DVEIRIVKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 1822



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 79/163 (48%), Gaps = 12/163 (7%)

Query: 75   NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
            + +   A++   +  G +  A+++FD + + D   W+AMI+G    G + +A  +F +M 
Sbjct: 1384 DVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEML 1443

Query: 135  MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194
                     T + +LTAC+  G ++ G+    ++RSR  +Q  ++   A+VD+  + G +
Sbjct: 1444 SAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSR-GMQMSIKLGTALVDMYSKCGAV 1502

Query: 195  EEAYGLITSMTMEPDVVVWRALLSA----------CRTFKRLE 227
              A  +  SM  E +V  W + +S            + FKR+E
Sbjct: 1503 VTAMEVFESMA-ERNVYTWTSAVSGLAMNGMGTECLQLFKRME 1544


>gi|302793743|ref|XP_002978636.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
 gi|300153445|gb|EFJ20083.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
          Length = 438

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 177/412 (42%), Positives = 254/412 (61%), Gaps = 11/412 (2%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           +  WN+MI  +V++    +A+R F E+L+ ++EP+  T   V+  CA L AL     VH 
Sbjct: 31  IFPWNAMIAAYVQHGDSRQAIRLFDELLARRIEPNSVTLMEVLDACASLAALRDGKRVHA 90

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
           +  +  ++    ++ A++DMYSKCG +  A E F  ++R+D   W AM++  A HG    
Sbjct: 91  IARDHGVDSEVAVATAIVDMYSKCGCLDEAVEAFARIERHDTVSWTAMLAAFAQHGHIDR 150

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           A A F +M+     P+ +TF+ LL+ACSH GLVEEGRKYFD M +RY I P  +HY  MV
Sbjct: 151 ALATFQRMQEQGHKPNYVTFVHLLSACSHKGLVEEGRKYFDLMTARYGIAPDAQHYACMV 210

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM----- 240
           DLLGRAG+++EA   +  M   P   V ++LLSACR++K ++ GE     I++ M     
Sbjct: 211 DLLGRAGYLDEAEDFLNRMPGAPHAAVLKSLLSACRSYKDVDRGE----RIAKRMLESFW 266

Query: 241 --GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
                YV+L+++Y    +W+ A  +R +M ++GVRK  G+S +E+ G + +F AGD SH 
Sbjct: 267 DESMPYVVLASIYRAAGKWEEAARIRSLMVERGVRKDPGRSAIEVEGRVFEFVAGDMSHV 326

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           +   I   L  L    K  G++P T LVL DV+EEEKE  L  HSEKLA+A+G+L T  G
Sbjct: 327 QMNPIRAKLQELSSAMKEAGYVPDTSLVLHDVAEEEKEQVLLWHSEKLAVAFGLLNTPAG 386

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + IR+ KNLR+C DCH   K+IS + +R I+ RD  RFH FE G+CSCGDYW
Sbjct: 387 SPIRVIKNLRVCKDCHDAAKLISAIEQRRIVFRDLSRFHHFENGVCSCGDYW 438



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 70/138 (50%), Gaps = 2/138 (1%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
           ++  ++K G + +A  +F    R+ +  WNAMI+    HG +  A  +F ++    + P+
Sbjct: 6   VLSAFAKVGNLHLAARIFARTDRSYIFPWNAMIAAYVQHGDSRQAIRLFDELLARRIEPN 65

Query: 142 SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
           S+T + +L AC+    + +G++     R  + +  ++    A+VD+  + G ++EA    
Sbjct: 66  SVTLMEVLDACASLAALRDGKRVHAIARD-HGVDSEVAVATAIVDMYSKCGCLDEAVEAF 124

Query: 202 TSMTMEPDVVVWRALLSA 219
             +    D V W A+L+A
Sbjct: 125 ARIERH-DTVSWTAMLAA 141



 Score = 42.4 bits (98), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 1/97 (1%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D VSW +M+  F ++   D AL  F+ M     +P+  TF  ++  C+  G +       
Sbjct: 131 DTVSWTAMLAAFAQHGHIDRALATFQRMQEQGHKPNYVTFVHLLSACSHKGLVEEGRKYF 190

Query: 65  NLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFD 100
           +L+  +  I  +    A ++D+  + G +  A++  +
Sbjct: 191 DLMTARYGIAPDAQHYACMVDLLGRAGYLDEAEDFLN 227


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 179/413 (43%), Positives = 262/413 (63%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D ++W +MI G+V+  RF +AL  FR M   KV  D+FT  SV+  CA+LGAL   
Sbjct: 253 MPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETG 312

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W    +    I+++  +  ALIDMYSKCG I+ A +VF  +   D   W A+I G+A++
Sbjct: 313 EWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVN 372

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M      PD +TF+G+LTAC+H GLV++GR++F  M   Y+I P + H
Sbjct: 373 GRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVH 432

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG ++D+LGRAG ++EA   I  M M+P+  +W  LL++CR +   E+GE+A   +  L 
Sbjct: 433 YGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLELD 492

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             +   Y+LLSNMY    RW     +R+I+ +KG++K  G S +E+ G+IH+F A DRSH
Sbjct: 493 PDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFVAADRSH 552

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + I   L +++   ++ G++P    VL++V+EEEK+  LY HSEKLA+ + +L +  
Sbjct: 553 PMNKEIYSKLENVLTDLRNAGYVPDVTEVLVEVTEEEKQKVLYWHSEKLAVTFALLTSES 612

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IRI KNLR+C DCH+ IK+IS+L  R +IVRDR RFH F  G CSC DYW
Sbjct: 613 NVIIRIVKNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSCSCKDYW 665



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 33/242 (13%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           V WN++I G  R+ RF+ +   F +M+ +       T+ SV+  C +   L     VH  
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKR 186

Query: 67  IIEKKIELNFILSAALIDMYSKC-------------------------------GKIQMA 95
           ++E  +  +  +  AL+DMY++C                               G++  A
Sbjct: 187 VLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRA 246

Query: 96  KEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHC 155
           +++FD +   D   W AMI G    G   DA   F  M++  V  D  T + ++TAC+  
Sbjct: 247 RDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQL 306

Query: 156 GLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRA 215
           G +E G     +M  R  I+  +    A++D+  + G IE A  +   M    D   W A
Sbjct: 307 GALETGEWARIYM-GRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMH-NRDKFTWTA 364

Query: 216 LL 217
           ++
Sbjct: 365 II 366



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 92/207 (44%), Gaps = 13/207 (6%)

Query: 23  DEALRFFREMLSSKVEPDKFTFASVI-----YGCARLGALNHAYWVHNLIIEKKIELNFI 77
           +EA+  +  ML+    PD +TF S++        A + A +    +H  +++  +E N  
Sbjct: 33  EEAVAGYVRMLAGGARPDAYTFPSLLKAAAAARGAAVAAASVGGAIHAHVVKFGMESNAH 92

Query: 78  LSAALIDMYSKCGKIQMAKEVFD----TVQRNDVSVWNAMISGVAIHGLAADASAIFTKM 133
            +++LI MY+  G    A+ V +            +WNA+ISG    G    +   F  M
Sbjct: 93  AASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHNRSGRFELSCCSFVDM 152

Query: 134 EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS-IQPQLEHYGAMVDLLGRAG 192
              + +  ++T++ +L+AC     +  G +   H R   S + P      A+VD+    G
Sbjct: 153 VRASAMATAVTYVSVLSACGKGKDLLLGMQV--HKRVLESGVLPDQRVENALVDMYAECG 210

Query: 193 HIEEAYGLITSMTMEPDVVVWRALLSA 219
            ++ A+ L   M M   +  W +++S 
Sbjct: 211 DMDAAWVLFEGMQMR-SMASWTSVISG 236


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 183/411 (44%), Positives = 258/411 (62%), Gaps = 9/411 (2%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           VVS+N+MI   VR++R  EAL  FREM    ++P   T  SV+  CA LGAL    WVH+
Sbjct: 199 VVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGALELGRWVHD 258

Query: 66  LIIEKKIELNFIL--SAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
            +  +KI L  ++  S ALIDMY+KCG ++ A +VF  ++  D   W+ MI   A HG  
Sbjct: 259 YV--RKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESKDRQAWSVMIVAYANHGYG 316

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A ++F +M+   + PD ITFLG+L ACSH GLV EG +YFD M+  + I P ++HYG 
Sbjct: 317 REAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFDDMKD-HGIVPGIKHYGC 375

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---M 240
           + DLL R+G +E AY  I  + + P  ++WR LLSAC      ELG+     I +L    
Sbjct: 376 VTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDFELGKRVFERILKLDDSH 435

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
           GGDYV+ SN+      W+    VR++M +KGV K  G S +E+   +H+F AGD  HP++
Sbjct: 436 GGDYVIFSNLCANTGYWEEMNMVRKLMSEKGVVKVPGCSSIEIDNTVHEFFAGDGRHPKS 495

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVL-MDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           Q   K++  +I + K  G++P T  V  +++ EEEK  +L +HSEKLA+A+G+L T+PG 
Sbjct: 496 QEARKMVDEVIDQLKLVGYVPNTSHVFHVEMGEEEKAISLKYHSEKLAIAFGLLNTAPGA 555

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            +R+ KNLR+C DCHS  K++S +  R II+RD  RFH FE G+CSCGDYW
Sbjct: 556 TLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEEGICSCGDYW 606



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 108/220 (49%), Gaps = 7/220 (3%)

Query: 5   DVVSWNSMIGGFVRNARFDE-----ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           D V +N+++ G+ R++         A+R F  ML   V PD +TF S++  CA   A   
Sbjct: 92  DAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDTYTFVSLLKACAAARAGEE 151

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
               H L ++     +  +   LI+MY++CG  + A+ +F       V  +NAMI+    
Sbjct: 152 GRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMFGGTDGGCVVSYNAMIAAAVR 211

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
                +A  +F +M+   + P S+T + +L+AC+  G +E GR   D++R +  +   ++
Sbjct: 212 SSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGALELGRWVHDYVR-KIGLGSLVK 270

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A++D+  + G +E+A  +   M  + D   W  ++ A
Sbjct: 271 VSTALIDMYAKCGSLEDAIDVFQGMESK-DRQAWSVMIVA 309



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 1/122 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD  +W+ MI  +  +    EA+  F EM    ++PD  TF  V+Y C+  G ++  
Sbjct: 295 MESKDRQAWSVMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEG 354

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV-WNAMISGVAI 119
               + + +  I         + D+ ++ G+++ A +  D +  N   + W  ++S    
Sbjct: 355 LQYFDDMKDHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGG 414

Query: 120 HG 121
           HG
Sbjct: 415 HG 416


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 174/413 (42%), Positives = 258/413 (62%), Gaps = 4/413 (0%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            MP +DVVSW ++I  +V+    + AL  F +ML+  ++P++ T  S++  C  LGA+   
Sbjct: 647  MPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLG 706

Query: 61   YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
               H LI +   +    +  +LI MY KCG  +    VF+ +  +D+  WNA++ G A +
Sbjct: 707  EQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQN 765

Query: 121  GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            GL  +A  IF +ME+  +LPD ++FLG+L ACSH GLV+EG  +F+ M  +Y I P + H
Sbjct: 766  GLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYH 825

Query: 181  YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE-VA--IVNIS 237
            Y  MVDLLGRAG++ EA  LI +M ++PD V+W ALL ACR  + +ELG+ VA  +  ++
Sbjct: 826  YTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMT 885

Query: 238  RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
            +     YVLLSN++     WD    +R++MK +G+ K  G SW+++   +H F  GDR+H
Sbjct: 886  KPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTH 945

Query: 298  PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
             + + I   L       ++ G++P T  VL DV EE+K+  L +HSEKLA+ +GIL T  
Sbjct: 946  DQIEEIYSALKEYYGCFRATGYMPDTNFVLHDVEEEQKQNELLYHSEKLAVVFGILSTPN 1005

Query: 358  GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G+ I+I KNLRIC DCH+++K +S++  R II+RD  RFH F  G CSCGDYW
Sbjct: 1006 GSPIQIIKNLRICGDCHTFMKFMSKVTLRKIIIRDGNRFHHFRDGSCSCGDYW 1058



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 115/251 (45%), Gaps = 34/251 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP K+  SW +MI GFV+N    EAL    E+  S   P   +F S +  CA +G +   
Sbjct: 515 MPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIG 574

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+L I+   + N  +   LI MY+KCG ++    VF T++  D   WN++ISG++ +
Sbjct: 575 RVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSEN 634

Query: 121 GLAADASAIFTKMEMFNVL-------------------------------PDSITFLGLL 149
            +  DA  +F KM   +V+                               P+ +T   LL
Sbjct: 635 YMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLL 694

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
           +AC + G ++ G + F  +  +      L    +++ +  + G+ E+ + +   M  E D
Sbjct: 695 SACGNLGAIKLGEQ-FHALIFKLGFDTFLFVGNSLITMYFKCGY-EDGFCVFEEMP-EHD 751

Query: 210 VVVWRALLSAC 220
           ++ W A+L  C
Sbjct: 752 LITWNAVLVGC 762



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 125/276 (45%), Gaps = 24/276 (8%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P   +   N+ I    R  R +EA R F EM    ++ D  ++ S+I G ++ G ++ A 
Sbjct: 167 PQTHLFQCNTRIQELGRLGRVEEARRVFNEM----IQRDVVSWNSMINGYSQNGKVDEAR 222

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            + +  + K I    IL    +  Y+K G+I+ A+EVF+++   +V  WNAMISG   +G
Sbjct: 223 LLFDAFVGKNIRTWTIL----LTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNG 278

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              +A  +F +M   NV     ++  ++T   HC  + E R+ FD M  R S+      +
Sbjct: 279 DLKNARKLFDEMPEKNV----ASWNSVVTGYCHCYRMSEARELFDQMPERNSVS-----W 329

Query: 182 GAMVDLLGRAGHIEEAYGLITSM---TMEPDVVVWRALLSACRTFKRLEL-GEVAIVNIS 237
             M+          EA+ +   M      PD  ++  +LSA      LEL G +  + I 
Sbjct: 330 MVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIK 389

Query: 238 RLMGGDYVLLS---NMYCYLKRWDTAENVREIMKKK 270
               GD V+ S   N Y      D A +  E M ++
Sbjct: 390 TGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPER 425



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/328 (20%), Positives = 142/328 (43%), Gaps = 43/328 (13%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + DVV  ++++  + RN   D A+ FF  M     E +++++ ++I   A+ G L+ A  
Sbjct: 393 EGDVVVGSAILNAYTRNGSLDLAMHFFETM----PERNEYSWTTMIAAFAQCGRLDDAIQ 448

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           ++  + E+ +        A++  Y++ G+IQ A+ +FD +   +V  WNA+I+G   +G+
Sbjct: 449 LYERVPEQTVATK----TAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGM 504

Query: 123 AADASAIFTKMEMFNV-------------------------------LPDSITFLGLLTA 151
             +A  +F KM + N                                +P   +F   L+A
Sbjct: 505 LKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSA 564

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           C++ G VE GR     +  +   Q        ++ +  + G++E+   +  ++ ++ D V
Sbjct: 565 CANIGDVEIGR-VIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVK-DTV 622

Query: 212 VWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKG 271
            W +L+S       L+   V    + +     +  + + Y      + A ++   M  +G
Sbjct: 623 SWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARG 682

Query: 272 VRKSQ--GKSWLELAGVIHQFKAGDRSH 297
           ++ +Q    S L   G +   K G++ H
Sbjct: 683 IKPNQLTVTSLLSACGNLGAIKLGEQFH 710



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 106/221 (47%), Gaps = 14/221 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++ VSW  MI G+V  + + EA   F +M  +   PD+  F  V+     L  L   
Sbjct: 321 MPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELI 380

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +  + I+   E + ++ +A+++ Y++ G + +A   F+T+   +   W  MI+  A  
Sbjct: 381 GSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQC 440

Query: 121 GLAADASAIFTKMEMFNVLPDSI--TFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           G   DA      ++++  +P+    T   ++TA +  G +++ R  FD +     + P +
Sbjct: 441 GRLDDA------IQLYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEI-----LNPNV 489

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             + A++    + G ++EA  L   M ++ +   W A+++ 
Sbjct: 490 VAWNAIIAGYTQNGMLKEAKDLFQKMPVK-NSASWAAMIAG 529


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 175/415 (42%), Positives = 254/415 (61%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P++DVVS  ++I G+ +    +EAL  FR +    +  +  T+ASV+   + L AL+H 
Sbjct: 172 LPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHG 231

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ ++  K+    +L  +LIDMYSKCG +  ++ +FD++    V  WNAM+ G + H
Sbjct: 232 RQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKH 291

Query: 121 GLAADASAIFTKMEMFN-VLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQL 178
           GL  +A  +F  M+  N V PDS+TFL +L+ CSH G+ + G + F  M   +   +P++
Sbjct: 292 GLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEI 351

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVN 235
           EHYG +VDL GRAG +EEA+  I  M  EP   +W +LL ACR  + + +GE     ++ 
Sbjct: 352 EHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLE 411

Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           I     G+YV+LSN+Y    RWD    VRE+MK+K V K  G+SW+EL   +H F A DR
Sbjct: 412 IESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDR 471

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SHP  + +   +  L  + K  G++P    VL DV +E+KE  L  HSEKLALA+G++ T
Sbjct: 472 SHPRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICT 531

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             GT +RI KNLRIC DCH++ K +SR+  R + +RD+ RFH   GG CSCGDYW
Sbjct: 532 PGGTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 586



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 121/218 (55%), Gaps = 4/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++VVSW +MI G+ +     EAL  F EML S   P++FTFA+V+  C         
Sbjct: 71  MPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLG 130

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+L+I+   E +  + ++L+DMY+K GKI  A+ VFD +   DV    A+ISG A  
Sbjct: 131 RQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQL 190

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
           GL  +A  +F +++   +  + +T+  +LTA S    ++ GR+   H +R++      L+
Sbjct: 191 GLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQ 250

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           +  +++D+  + G +  +  +  SM  E  V+ W A+L
Sbjct: 251 N--SLIDMYSKCGSLTYSRRIFDSMP-ERTVISWNAML 285



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 9/227 (3%)

Query: 44  FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           + SV+  C    A+     VH  +I+   E    L   LI +Y+KC  +  A+ V D + 
Sbjct: 13  YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMP 72

Query: 104 RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
             +V  W AMISG +  G A++A  +F +M M    P+  TF  +LT+C+     + GR+
Sbjct: 73  ERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ 132

Query: 164 YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTF 223
               +  + S +  +    +++D+  +AG I EA  +   +  E DVV   A++S    +
Sbjct: 133 -IHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLP-ERDVVSCTAIISG---Y 187

Query: 224 KRLELGEVAIVNISRL----MGGDYVLLSNMYCYLKRWDTAENVREI 266
            +L L E A+    RL    M  +YV  +++   L      ++ R++
Sbjct: 188 AQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQV 234


>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 558

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 184/414 (44%), Positives = 252/414 (60%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNH 59
           M ++D VSW+++I  F+ N    EAL  F +M L  KV PD+ T  SVI   + LG L  
Sbjct: 145 MSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLEL 204

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             WV   I      ++  L  ALIDM+S+CG I  +  VF+ +   +V  W A+I+G+ I
Sbjct: 205 GRWVRAFIGRLGFGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGI 264

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG + +A A+F  M    V PD +TF G+L ACSH GLV+EG   F+ +R  Y + P L+
Sbjct: 265 HGRSMEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYGMDPLLD 324

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HYG MVD+LGRAG + EAY  +  M M+P+ ++WR LL AC     L L E     IS++
Sbjct: 325 HYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGACVNHNNLGLAEKVKAKISKI 384

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                GD VLLSN+Y    RW    ++R  M++K + K  G S + +   IH+F +GD S
Sbjct: 385 SSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSSINVDQTIHEFVSGDNS 444

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+++ I K L S+I   ++ G++  T+ VL D+ EEE+E +L +HSEKLA+A+ IL   
Sbjct: 445 HPQSEDITKFLSSIIGDLRNRGYMMQTKNVLHDIEEEEREHSLSYHSEKLAVAFAILSMK 504

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
               IRI KNLRIC+DCHS++K IS    R II+RDR RFH FE GLCSC DYW
Sbjct: 505 DKRTIRIMKNLRICYDCHSFMKHISVRFERKIIIRDRNRFHHFEKGLCSCHDYW 558



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 142/278 (51%), Gaps = 21/278 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARF--DEALRFFREMLSSKVEPDKFTFASVIYGCARLGALN 58
           +P  D +++N++I     ++RF    +L +F  M S+ +  D FTF  V+  C+RL    
Sbjct: 48  IPSPDTIAYNTIIRS---HSRFFPSHSLSYFFSMRSNGIPLDNFTFPFVLKACSRLQINL 104

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
           H   +H+LI++  +  +  +  ALI +Y  CG ++MA +VFD +   D   W+ +I+   
Sbjct: 105 H---LHSLIVKYGLGSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFL 161

Query: 119 IHGLAADASAIFTKMEMFN-VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
            +G A++A  +F KM++ + V+PD +T L +++A SH G +E GR +      R      
Sbjct: 162 NNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGR-WVRAFIGRLGFGVS 220

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
           +    A++D+  R G I+E+  +   M +  +V+ W AL++      R  +  +A+ +  
Sbjct: 221 VALGTALIDMFSRCGSIDESIVVFEKMAVR-NVLTWTALINGLGIHGR-SMEALAMFHSM 278

Query: 238 RLMG--GDYVLLSNMYCYLKR-------WDTAENVREI 266
           R  G   DYV  S +             WD  E++R++
Sbjct: 279 RKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKV 316


>gi|326532424|dbj|BAK05141.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 413

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 183/398 (45%), Positives = 251/398 (63%), Gaps = 3/398 (0%)

Query: 16  FVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELN 75
           +V+N   D A   FR+M    VEPD  T  S+I  CA L AL H    H  +I + +   
Sbjct: 16  YVQNGMADAAFLVFRKMQVCNVEPDVATMVSLIPACAHLAALQHGKCSHGSVIVRGMAPE 75

Query: 76  FILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEM 135
             +  ALIDMY+KCG+I  ++++FD +   D+  WN MI+G  IHGL  +A+A+F  M+ 
Sbjct: 76  TSICNALIDMYAKCGRIAFSRQIFDAMPSRDIVSWNTMIAGYGIHGLGKEATALFLDMKN 135

Query: 136 FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIE 195
               PD +TF+ L++ACSH GLV EG+ +F  M  +Y I P++EHY +MVDLL R G ++
Sbjct: 136 HACEPDGVTFICLISACSHSGLVTEGKHWFHMMAQKYGITPRMEHYISMVDLLARGGFLD 195

Query: 196 EAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---MGGDYVLLSNMYC 252
           EAY  I SM M+ DV VW ALL+ACR  K ++LG+     I +L     G++VLLSN++ 
Sbjct: 196 EAYQFIQSMPMKADVRVWGALLAACRVHKNIDLGKQVARVIQKLGPEGTGNFVLLSNIFS 255

Query: 253 YLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQ 312
              R+D A  VR I K+KG +KS G SW+E+ G +H F  GDRSHP +  I + L +++ 
Sbjct: 256 AAGRFDEAAEVRIIQKEKGFKKSPGCSWIEINGSLHAFIGGDRSHPRSPEIYQELHNILV 315

Query: 313 RTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIRISKNLRICHD 372
                G+   T  VL D+ EEEKE  L +HSEKLA+A+GIL  S   +I ++KNLR+C D
Sbjct: 316 DINKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGILTLSEDKDIFVTKNLRVCGD 375

Query: 373 CHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           CH+ IK +S + RR IIVRD  RFH F+ G CSCGD+W
Sbjct: 376 CHTVIKYMSLVRRRDIIVRDANRFHHFKNGQCSCGDFW 413



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+VSWN+MI G+  +    EA   F +M +   EPD  TF  +I  C+  G +   
Sbjct: 102 MPSRDIVSWNTMIAGYGIHGLGKEATALFLDMKNHACEPDGVTFICLISACSHSGLVTEG 161

Query: 61  -YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
            +W H +  +  I        +++D+ ++ G +  A +   ++  + DV VW A+++   
Sbjct: 162 KHWFHMMAQKYGITPRMEHYISMVDLLARGGFLDEAYQFIQSMPMKADVRVWGALLAACR 221

Query: 119 IH 120
           +H
Sbjct: 222 VH 223


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 183/413 (44%), Positives = 262/413 (63%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D+ VV+WNSMI G+ +N    EA+R F  M    VEP+  TF SV+  CA LGA    
Sbjct: 172 MRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILG 231

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH   +   ++LN +L  +LI+MY++CG +  A+EVFD+++  +V  W AMISG   +
Sbjct: 232 CWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTN 291

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  + A  +F +M    +LP+SITF+ +L+AC+H GLV EGR+ F+ MR  Y + P++EH
Sbjct: 292 GYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEH 351

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG-EVAIVNISRL 239
           +  +VD+LGRAG ++EAY  I  +  EP   +W A+L AC+  K   LG +VA   ++  
Sbjct: 352 HVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAMLGACKMHKNFGLGAQVAEHRLASE 411

Query: 240 MG--GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
            G    YV+LSN+Y    R D  E VR+ M +K ++K  G S ++L    + F  GD+SH
Sbjct: 412 PGNPAHYVILSNIYALAGRMDQVEMVRDNMIRKCLKKQVGYSTIDLDRKTYLFSMGDKSH 471

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            E   I   L  L+++ +  G++  ++ V+ ++ EEE+E  L +HSEKLA+A+G+LKTS 
Sbjct: 472 TETNEIYHYLDQLMRKCREAGYVTVSDSVMHELEEEEREYALGYHSEKLAIAFGLLKTSR 531

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IRI KNLR+C DCHS IK IS +  R IIVRD++RFH F+ G CSC DYW
Sbjct: 532 GTVIRIVKNLRMCEDCHSAIKYISVISNREIIVRDKLRFHHFKNGSCSCLDYW 584



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 119/259 (45%), Gaps = 44/259 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFD-EALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           +P+ D   + S+I    +   F   +L F+  M+ S V P  +TF SVI  CA L AL H
Sbjct: 70  VPNPDSFLFTSLIRSTSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRH 129

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  ++      +  +  AL+  Y KCG +  A++VFD ++   V  WN+MISG   
Sbjct: 130 GRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQ 189

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH------------------------- 154
           +G A +A  +F +M+   V P+S TF+ +L+AC+H                         
Sbjct: 190 NGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVL 249

Query: 155 ----------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
                     CG V + R+ FD M+ R  +      + AM+   G  G+  +A  L   M
Sbjct: 250 GTSLINMYTRCGNVSKAREVFDSMKERNVVA-----WTAMISGYGTNGYGSQAVELFHEM 304

Query: 205 T---MEPDVVVWRALLSAC 220
               + P+ + + A+LSAC
Sbjct: 305 RRNGLLPNSITFVAVLSAC 323


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  354 bits (909), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 187/414 (45%), Positives = 261/414 (63%), Gaps = 9/414 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           MP ++VV+WNSMI G+ +N +   A+  F+EM+++K + PD+ T  SVI  C  LGAL  
Sbjct: 195 MPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALEL 254

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             WV   + E +I+L+     A+I MYS+CG ++ AK VF  +   DV  +N +ISG A 
Sbjct: 255 GNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAA 314

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +A  + + M+   + PD +TF+G+LTACSH GL+EEGRK F+ ++      P ++
Sbjct: 315 HGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK-----DPAID 369

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY  MVDLLGR G +E+A   +  M MEP   V+ +LL+A R  K++ELGE+A   +  L
Sbjct: 370 HYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFEL 429

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G+++LLSN+Y    RW   E +RE MKK GV+K+ G SW+E  G +H+F   DRS
Sbjct: 430 EPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRS 489

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           H  +  I ++L  L ++ +  G++     VL DV EEEKE  +  HSEKLA+ Y +L + 
Sbjct: 490 HERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSE 549

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  IR+ KNLR+C DCH+ IKMIS+L  RVIIVRD  RFH F  GLCSC DYW
Sbjct: 550 AGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 603



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 113/220 (51%), Gaps = 9/220 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++V++W +M+ G+ +    + A R+F  M    V     ++ +++ G A+ G    A
Sbjct: 100 MPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSV----VSWNAMLSGYAQNGLAEEA 155

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             + + ++      N +   A+I  Y + G +  A+++F+T+   +V  WN+MI+G A +
Sbjct: 156 LRLFDEMLGAY--RNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQN 213

Query: 121 GLAADASAIFTKMEMFNVL-PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           G +A A  +F +M     L PD +T + +++AC H G +E G  +     +   I+  + 
Sbjct: 214 GQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELG-NWVVRFLTENQIKLSIS 272

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            + AM+ +  R G +E+A  +   M    DVV +  L+S 
Sbjct: 273 GHNAMIFMYSRCGSMEDAKRVFQEMATR-DVVSYNTLISG 311



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 104/219 (47%), Gaps = 27/219 (12%)

Query: 15  GFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIEL 74
            FVRNA  D        M + KV      + +++ G  +  +   A W+ +++ E+    
Sbjct: 60  AFVRNAVID--------MYARKVAD----WNAMVSGYWKWESEGQAQWLFDVMPER---- 103

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           N I   A++  Y+K   ++ A+  FD +    V  WNAM+SG A +GLA +A  +F   E
Sbjct: 104 NVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFD--E 161

Query: 135 MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGH- 193
           M     +S+T+  +++A    G ++  RK F+ M  R  +      + +M+    + G  
Sbjct: 162 MLGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVT-----WNSMIAGYAQNGQS 216

Query: 194 ---IEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG 229
              IE    +IT+  + PD V   +++SAC     LELG
Sbjct: 217 AMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELG 255


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  354 bits (909), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 179/414 (43%), Positives = 253/414 (61%), Gaps = 10/414 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD+VSW SMI   V N    EAL  F  +  + ++PD     S +   A L +L     +
Sbjct: 513 KDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEI 572

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I K   L   ++++L+DMY+ CG ++ ++++F +V++ D+ +W +MI+   +HG  
Sbjct: 573 HGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCG 632

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A A+F KM   NV+PD ITFL LL ACSH GL+ EG+++F+ M+  Y ++P  EHY  
Sbjct: 633 NEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYAC 692

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
           MVDLL R+  +EEAY  + SM ++P   VW ALL AC      ELGE+A   ++      
Sbjct: 693 MVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKELLQSDTKN 752

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G Y L+SN++    RW+  E VR  MK  G++K+ G SW+E+   IH F A D+SHP+ 
Sbjct: 753 SGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQT 812

Query: 301 QAIDKILGSLIQRT----KSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
              D I   L Q T    K  G++  T+ V  +VSEEEK   LY HSE+LAL YG+L T 
Sbjct: 813 ---DDIYLKLAQFTKLLGKKGGYIAQTKFVFHNVSEEEKTQMLYRHSERLALGYGLLVTP 869

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            GT IRI+KNLRIC DCH++ K+ S + +R ++VRD  RFH FE GLCSCGD+W
Sbjct: 870 KGTSIRITKNLRICDDCHTFFKIASEVSQRALVVRDANRFHHFERGLCSCGDFW 923



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 118/258 (45%), Gaps = 44/258 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +KD++SW ++I G+ +N    EA+  FR++    ++ D     SV+  C+ L + N  
Sbjct: 410 MHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFI 469

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  + ++ +  + +L  A++++Y + G    A+  F++++  D+  W +MI+    +
Sbjct: 470 REIHGYVFKRDLA-DIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHN 528

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSH-------------------------- 154
           GL  +A  +F  ++  N+ PDSI  +  L+A ++                          
Sbjct: 529 GLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIA 588

Query: 155 ---------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
                    CG VE  RK F  ++ R      L  + +M++  G  G   EA  L   MT
Sbjct: 589 SSLVDMYACCGTVENSRKMFHSVKQR-----DLILWTSMINANGMHGCGNEAIALFKKMT 643

Query: 206 ME---PDVVVWRALLSAC 220
            E   PD + + ALL AC
Sbjct: 644 DENVIPDHITFLALLYAC 661



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 110/217 (50%), Gaps = 3/217 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D VSWN+++ G V+N  + +AL +FR+M +S  +PD+ +  ++I    R G L +   V
Sbjct: 312 RDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEV 371

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   I   ++ N  +   LIDMY+KC  ++     F+ +   D+  W  +I+G A +   
Sbjct: 372 HAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECH 431

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F K+++  +  D +    +L ACS        R+   ++  R      L++  A
Sbjct: 432 LEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQN--A 489

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
           +V++ G  GH + A     S+    D+V W ++++ C
Sbjct: 490 IVNVYGEVGHRDYARRAFESIR-SKDIVSWTSMITCC 525



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 108/222 (48%), Gaps = 6/222 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++ + +WN+M+G FV + ++ EA+  ++EM    V  D  TF SV+  C  LG     
Sbjct: 105 MTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLG 164

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV--QRNDVSVWNAMISGVA 118
             +H + ++        +  ALI MY KCG +  A+ +FD +  ++ D   WN++IS   
Sbjct: 165 AEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHV 224

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQ 177
             G   +A ++F +M+   V  ++ TF+  L        V+ G   +   ++S +     
Sbjct: 225 TEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVY 284

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           + +  A++ +  + G +E+A  +  SM    D V W  LLS 
Sbjct: 285 VAN--ALIAMYAKCGRMEDAERVFASMLCR-DYVSWNTLLSG 323



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 101/219 (46%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D VSWNS+I   V   +  EAL  FR M    V  + +TF + + G      +   
Sbjct: 208 MEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLG 267

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++     +  ++ ALI MY+KCG+++ A+ VF ++   D   WN ++SG+  +
Sbjct: 268 MGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQN 327

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            L  DA   F  M+     PD ++ L L+ A    G +  G++   +   R  +   ++ 
Sbjct: 328 ELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYA-IRNGLDSNMQI 386

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              ++D+  +   ++   G       E D++ W  +++ 
Sbjct: 387 GNTLIDMYAKCCCVKH-MGYAFECMHEKDLISWTTIIAG 424



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 4/170 (2%)

Query: 51  CARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVW 110
           C  + AL     +H  ++  K  L+  L+  L+ MY KCG ++ A +VFD +    +  W
Sbjct: 56  CVAVKALPQGQQLHARLL--KSHLSAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTW 113

Query: 111 NAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS 170
           NAM+      G   +A  ++ +M +  V  D+ TF  +L AC   G    G +    +  
Sbjct: 114 NAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAE-IHGVAV 172

Query: 171 RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP-DVVVWRALLSA 219
           +      +    A++ + G+ G +  A  L   + ME  D V W +++SA
Sbjct: 173 KCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISA 222


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  354 bits (909), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 187/414 (45%), Positives = 261/414 (63%), Gaps = 9/414 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           MP ++VV+WNSMI G+ +N +   A+  F+EM+++K + PD+ T  SVI  C  LGAL  
Sbjct: 353 MPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALEL 412

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             WV   + E +I+L+     A+I MYS+CG ++ AK VF  +   DV  +N +ISG A 
Sbjct: 413 GNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAA 472

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +A  + + M+   + PD +TF+G+LTACSH GL+EEGRK F+ ++      P ++
Sbjct: 473 HGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK-----DPAID 527

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY  MVDLLGR G +E+A   +  M MEP   V+ +LL+A R  K++ELGE+A   +  L
Sbjct: 528 HYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFEL 587

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G+++LLSN+Y    RW   E +RE MKK GV+K+ G SW+E  G +H+F   DRS
Sbjct: 588 EPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRS 647

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           H  +  I ++L  L ++ +  G++     VL DV EEEKE  +  HSEKLA+ Y +L + 
Sbjct: 648 HERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSE 707

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  IR+ KNLR+C DCH+ IKMIS+L  RVIIVRD  RFH F  GLCSC DYW
Sbjct: 708 AGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 761



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 128/252 (50%), Gaps = 35/252 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++ VVSWN+M+ G+ +N   +E LR F EM+++ +EPD+ T+ +VI  C+  G    A
Sbjct: 220 MPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLA 279

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD-------------------- 100
             +   + +K+I+LN  +  AL+DMY+KCG I  A+ +FD                    
Sbjct: 280 ASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTR 339

Query: 101 ------------TVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVL-PDSITFLG 147
                       T+   +V  WN+MI+G A +G +A A  +F +M     L PD +T + 
Sbjct: 340 VGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVS 399

Query: 148 LLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME 207
           +++AC H G +E G  +     +   I+  +  + AM+ +  R G +E+A  +   M   
Sbjct: 400 VISACGHLGALELG-NWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATR 458

Query: 208 PDVVVWRALLSA 219
            DVV +  L+S 
Sbjct: 459 -DVVSYNTLISG 469



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 19/225 (8%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + +V  + SM+  +       + +  F  M    V PD F +  +I      G   HA+ 
Sbjct: 62  NPNVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNGGIGFHAH- 120

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ--RNDVSVWNAMISGVAIH 120
               +++     +  +  A+IDMY++ G I  A++VFD +      V+ WNAM+SG    
Sbjct: 121 ----VLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKW 176

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                A  +F  M   NV    IT+  ++T  +    +E  R+YFD M  R  +      
Sbjct: 177 ESEGQAQWLFDVMPERNV----ITWTAMVTGYAKVKDLEAARRYFDCMPERSVVS----- 227

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRT 222
           + AM+    + G  EE   L   M    +EPD   W  ++SAC +
Sbjct: 228 WNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSS 272



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 102/217 (47%), Gaps = 11/217 (5%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D    N++I  + R      A + F E+     E     + +++ G  +  +   A W+ 
Sbjct: 129 DAFVRNAVIDMYARLGPIGHARKVFDEI--PDYERKVADWNAMVSGYWKWESEGQAQWLF 186

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
           +++ E+    N I   A++  Y+K   ++ A+  FD +    V  WNAM+SG A +GLA 
Sbjct: 187 DVMPER----NVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAE 242

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY--G 182
           +   +F +M    + PD  T++ +++ACS  G   +       +R+ +  Q QL  +   
Sbjct: 243 EVLRLFDEMVNAGIEPDETTWVTVISACSSRG---DPCLAASLVRTLHQKQIQLNCFVRT 299

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A++D+  + G I  A  +   +    + V W A++SA
Sbjct: 300 ALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISA 336


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  354 bits (909), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 175/415 (42%), Positives = 254/415 (61%), Gaps = 5/415 (1%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            +P++DVVS  ++I G+ +    +EAL  FR +    +  +  T+ASV+   + L AL+H 
Sbjct: 639  LPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHG 698

Query: 61   YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              VH+ ++  K+    +L  +LIDMYSKCG +  ++ +FD++    V  WNAM+ G + H
Sbjct: 699  RQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKH 758

Query: 121  GLAADASAIFTKMEMFN-VLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQL 178
            GL  +A  +F  M+  N V PDS+TFL +L+ CSH G+ + G + F  M   +   +P++
Sbjct: 759  GLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEI 818

Query: 179  EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVN 235
            EHYG +VDL GRAG +EEA+  I  M  EP   +W +LL ACR  + + +GE     ++ 
Sbjct: 819  EHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLE 878

Query: 236  ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
            I     G+YV+LSN+Y    RWD    VRE+MK+K V K  G+SW+EL   +H F A DR
Sbjct: 879  IESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDR 938

Query: 296  SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
            SHP  + +   +  L  + K  G++P    VL DV +E+KE  L  HSEKLALA+G++ T
Sbjct: 939  SHPRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICT 998

Query: 356  SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              GT +RI KNLRIC DCH++ K +SR+  R + +RD+ RFH   GG CSCGDYW
Sbjct: 999  PGGTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 1053



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 121/218 (55%), Gaps = 4/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++VVSW +MI G+ +     EAL  F EML S   P++FTFA+V+  C         
Sbjct: 538 MPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLG 597

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+L+I+   E +  + ++L+DMY+K GKI  A+ VFD +   DV    A+ISG A  
Sbjct: 598 RQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQL 657

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
           GL  +A  +F +++   +  + +T+  +LTA S    ++ GR+   H +R++      L+
Sbjct: 658 GLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQ 717

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           +  +++D+  + G +  +  +  SM  E  V+ W A+L
Sbjct: 718 N--SLIDMYSKCGSLTYSRRIFDSMP-ERTVISWNAML 752



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 118/252 (46%), Gaps = 12/252 (4%)

Query: 19  NARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFIL 78
           N +  EAL    EM    +E +   + SV+  C    A+     VH  +I+   E    L
Sbjct: 458 NRQLKEALL---EMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYL 514

Query: 79  SAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNV 138
              LI +Y+KC  +  A+ V D +   +V  W AMISG +  G A++A  +F +M M   
Sbjct: 515 RTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGT 574

Query: 139 LPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAY 198
            P+  TF  +LT+C+     + GR+    +  + S +  +    +++D+  +AG I EA 
Sbjct: 575 APNEFTFATVLTSCTSSSGFQLGRQ-IHSLVIKTSFESHIFVGSSLLDMYAKAGKICEAR 633

Query: 199 GLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL----MGGDYVLLSNMYCYL 254
            +   +  E DVV   A++S    + +L L E A+    RL    M  +YV  +++   L
Sbjct: 634 RVFDGLP-ERDVVSCTAIISG---YAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTAL 689

Query: 255 KRWDTAENVREI 266
                 ++ R++
Sbjct: 690 SGLAALDHGRQV 701


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  354 bits (909), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 177/413 (42%), Positives = 248/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +KDV+SW S++ G+ +N   +E+L+ F +M  + V PD+F  AS++  CA L  L   
Sbjct: 425 MLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFG 484

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   I+  +  +  +  +L+ MY+KCG +  A  +F ++Q  DV  W A+I G A +
Sbjct: 485 KQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQN 544

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   ++   +  M      PD ITF+GLL ACSH GLV+EGRKYF  M   Y I+P  EH
Sbjct: 545 GKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEH 604

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  M+DL GR+G ++EA  L+  M ++PD  VW++LLSACR  + LEL E A  N+  L 
Sbjct: 605 YACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELE 664

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             +   YV+LSNMY   ++W+    +R++MK KG+ K  G SWLE+   ++ F + DR H
Sbjct: 665 PMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGH 724

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    I   +  +I R K  G++P     L D+ +E KE  L +HSEKLA+A+G+L   P
Sbjct: 725 PREAEIYTKIDEIILRIKEAGYVPDMSFSLHDMDKEGKEVGLAYHSEKLAVAFGLLAAPP 784

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IRI KNLR+C DCHS +K ISR+  R II+RD   FH F  G CSCGDYW
Sbjct: 785 SAPIRIFKNLRVCGDCHSAMKYISRVFTRHIILRDSNCFHHFREGECSCGDYW 837



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 125/218 (57%), Gaps = 6/218 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D DVVSWNS++ GFVR+   +EALR F+ M    ++ D +TF SV+  C  +G++N  
Sbjct: 326 MEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVL-NCCVVGSINPK 384

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH LII+   E   ++S AL+DMY+K G +  A  VF+ +   DV  W ++++G A +
Sbjct: 385 S-VHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQN 443

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLE 179
               ++  IF  M +  V PD      +L+AC+   L+E G++ + D ++S   ++    
Sbjct: 444 NSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKS--GLRWSQS 501

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
            Y ++V +  + G +++A  +  SM ++ DV+ W A++
Sbjct: 502 VYNSLVAMYAKCGCLDDADAIFVSMQVK-DVITWTAII 538



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 117/228 (51%), Gaps = 28/228 (12%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K+ V W +M+ G+ +N    +A+ FFR M +  VE +++TF +++  C+ + A      V
Sbjct: 228 KNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQV 287

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  I++     N  + +AL+DMY+KCG ++ AK + +T++ +DV  WN+++ G   HGL 
Sbjct: 288 HGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLE 347

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTAC--------SHCGLVEEGRKYFDHMRSRYSIQ 175
            +A  +F  M   N+  D  TF  +L  C        S  GL+               I+
Sbjct: 348 EEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLI---------------IK 392

Query: 176 PQLEHY----GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              E+Y     A+VD+  + G ++ AY +   M +E DV+ W +L++ 
Sbjct: 393 TGFENYKLVSNALVDMYAKTGDMDCAYTVFEKM-LEKDVISWTSLVTG 439



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 131/320 (40%), Gaps = 65/320 (20%)

Query: 1   MPDKDVVSWNSMIGGFVRNAR-------FD------------------------EALRFF 29
           MP KD  SWN+MI  +V   R       FD                        EA   F
Sbjct: 91  MPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLF 150

Query: 30  REMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKC 89
           R M     +  +FT  SV+  C+ LG +     +H  +++   E N  +   L+DMY+KC
Sbjct: 151 RSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKC 210

Query: 90  GKIQMAKEVFDTVQ--RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLG 147
             +  A+ +F  ++  R +  +W AM++G A +G    A   F  M    V  +  TF  
Sbjct: 211 KCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPT 270

Query: 148 LLTACS-----------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196
           +LTACS           H  +V+ G        S   +Q       A+VD+  + G ++ 
Sbjct: 271 ILTACSSVLARCFGEQVHGFIVKSG------FGSNVYVQ------SALVDMYAKCGDLKN 318

Query: 197 AYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG-----GDYVLLSNMY 251
           A  ++ +M  + DVV W +L+     F R  L E A+     + G      DY   S + 
Sbjct: 319 AKNMLETME-DDDVVSWNSLMVG---FVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLN 374

Query: 252 CYLKRWDTAENVREIMKKKG 271
           C +      ++V  ++ K G
Sbjct: 375 CCVVGSINPKSVHGLIIKTG 394


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  354 bits (909), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 175/416 (42%), Positives = 257/416 (61%), Gaps = 7/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  ++  WN +I G+  N  ++ A++ + +M    + PD FTF  V+  CA L A+ H 
Sbjct: 136 IPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHG 195

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRND---VSVWNAMISGV 117
             +H  +++   E +  + AALIDMY+KCG +  A+EVFD +   D   V  WNAMI+G 
Sbjct: 196 REIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGY 255

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           A+HG A +A  +F +M      PD ITF+G+L+ACSH GL+EEG  +F+ M   Y I P 
Sbjct: 256 AMHGHATEALDLFEEMNRV-AKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPT 314

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
           ++HY  MVDLLG +G ++EAY LI  M + PD  VW ALL++C+    +ELGE+A+  + 
Sbjct: 315 VQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLI 374

Query: 238 RLM---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294
            L     G+YV+LSN+Y    +W+    +R++M  + ++KS   SW+E+   +H F +GD
Sbjct: 375 ELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGD 434

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
            SHP +  I   L  +    K  G+ P+T  V  DV ++EK   +  HSE+LA+A+G++ 
Sbjct: 435 TSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLIS 494

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T PGT + I+KNLRIC DCH  IK IS++  R I VRD  R+H F+ G+CSCGDYW
Sbjct: 495 TPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 550



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 94/188 (50%), Gaps = 3/188 (1%)

Query: 34  SSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQ 93
           S+ + P    +AS++  C    A+     +H  +       + +++  L+++Y  C  + 
Sbjct: 68  STCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLS 127

Query: 94  MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
            A+ +FD + ++++ +WN +I G A +G    A  ++ +M  + ++PD+ TF  +L AC+
Sbjct: 128 SARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACA 187

Query: 154 HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV- 212
               +E GR+  +H+  +   +  +    A++D+  + G +  A  +   + +   V+V 
Sbjct: 188 ALSAIEHGREIHEHV-VQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVV 246

Query: 213 -WRALLSA 219
            W A+++ 
Sbjct: 247 SWNAMITG 254


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  354 bits (909), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 175/410 (42%), Positives = 256/410 (62%), Gaps = 4/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K+ VSWN++I G+ R    +EAL  F  M      P +FT+++++  C+ +G L    W+
Sbjct: 239 KNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWL 298

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +++   +L   +   L+ MY+K G I+ A++VFD + + DV   N+M+ G A HGL 
Sbjct: 299 HAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLG 358

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A+  F +M  F + P+ ITFL +LTACSH  L++EG+ YF  MR +Y+I+P++ HY  
Sbjct: 359 KEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMR-KYNIEPKVSHYAT 417

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---M 240
           +VDLLGRAG +++A   I  M +EP V +W ALL A +  K  E+G  A   +  L    
Sbjct: 418 IVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSY 477

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G + LL+N+Y    RW+    VR+IMK  GV+K    SW+E+   +H F A D +HP+ 
Sbjct: 478 PGTHTLLANIYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQK 537

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + I K+   L Q+ K  G++P T  VL+ V ++EKE NL +HSEKLAL++ +L T PG+ 
Sbjct: 538 EKIHKMWEKLNQKIKEIGYVPDTSHVLLFVDQQEKELNLQYHSEKLALSFALLNTPPGST 597

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IRI KN+R+C DCHS IK +S +++R IIVRD  RFH F  G CSCGDYW
Sbjct: 598 IRIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFCDGFCSCGDYW 647



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 122/219 (55%), Gaps = 6/219 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+VSW SMI G+ +N R  +AL  F  MLS   EP++FT +S++  C  + + N  
Sbjct: 135 MPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCG 194

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
             +H    +     N  + ++L+DMY++CG +  A  VFD +  +N+VS WNA+I+G A 
Sbjct: 195 RQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVS-WNALIAGYAR 253

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            G   +A A+F +M+     P   T+  LL++CS  G +E+G+    H+    S Q  + 
Sbjct: 254 KGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMK--SSQKLVG 311

Query: 180 HYG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           + G  ++ +  ++G I +A  +   + ++ DVV   ++L
Sbjct: 312 YVGNTLLHMYAKSGSIRDAEKVFDKL-VKVDVVSCNSML 349



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 43/232 (18%)

Query: 37  VEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAK 96
           +EPD+  + +++  C +LG L     VH  ++    + + ++  +L+ MY++CG ++ A+
Sbjct: 70  LEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGAR 129

Query: 97  EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH-- 154
            +FD +   D+  W +MI+G A +  A+DA  +F +M      P+  T   L+  C +  
Sbjct: 130 RLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMA 189

Query: 155 ---------------------------------CGLVEEGRKYFDHMRSRYSIQPQLEHY 181
                                            CG + E    FD +  +  +      +
Sbjct: 190 SYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVS-----W 244

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELGE 230
            A++    R G  EEA  L   M  E   P    + ALLS+C +   LE G+
Sbjct: 245 NALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGK 296


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  354 bits (908), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 180/412 (43%), Positives = 249/412 (60%), Gaps = 4/412 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA-LNHAY 61
           +KD+V+W++M+ G+ +    + A++ F ++    VEP++FTF+SV+  CA   A +    
Sbjct: 455 EKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGK 514

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
             H+  I+        +S+AL+ MY+K G I+ A EVF      D+  WN+MISG A HG
Sbjct: 515 QFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHG 574

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
               +  IF +M   N+  D ITF+G+++AC+H GLV EG++YFD M   Y I P +EHY
Sbjct: 575 CGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHY 634

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
             MVDL  RAG +E+A  LI  M       +WR LL+ACR    ++LGE+A   +  L  
Sbjct: 635 SCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQP 694

Query: 242 GD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
            D   YVLLSN+Y     W     VR++M  K V+K  G SW+E+      F AGD SHP
Sbjct: 695 QDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHP 754

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           ++  I   L  L  R K  G+ P T+ VL DV EE KE  L  HSE+LA+A+G++ T PG
Sbjct: 755 QSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPG 814

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T I+I KNLR+C DCH+ IK+IS++  R I+VRD  RFH F+GG CSCGDYW
Sbjct: 815 TPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 866



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 117/227 (51%), Gaps = 23/227 (10%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K+VVSW S++ G+ +N   ++AL+ F +M    ++P+ FTFA+V+ G A  GA+     V
Sbjct: 156 KNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQV 215

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H ++I+  ++    +  ++++MYSK   +  AK VFD+++  +   WN+MI+G   +GL 
Sbjct: 216 HTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLD 275

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACS-----------HCGLVEEGRKYFDHMRSRY 172
            +A  +F +M +  V      F  ++  C+           HC +++ G  +  ++++  
Sbjct: 276 LEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKT-- 333

Query: 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                     A++    +   I++A+ L   M    +VV W A++S 
Sbjct: 334 ----------ALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISG 370



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 107/216 (49%), Gaps = 5/216 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++VVSW ++I G+V+N R D A+  F +M    V P+ FT+++++   A +        +
Sbjct: 359 QNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPSQ----I 414

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H L+++   E +  +  AL D YSK G    A ++F+ +   D+  W+AM+SG A  G  
Sbjct: 415 HALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDI 474

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  IF ++    V P+  TF  +L AC+      E  K F     +      L    A
Sbjct: 475 EGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSA 534

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +V +  + G+IE A   +    ++ D+V W +++S 
Sbjct: 535 LVTMYAKRGNIESA-NEVFKRQVDRDLVSWNSMISG 569



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 7/220 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++ VSWNSMI GFV N    EA   F  M    V+  +  FA+VI  CA +  ++ A
Sbjct: 254 MENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFA 313

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR-NDVSVWNAMISGVAI 119
             +H  +I+   + +  +  AL+  YSKC +I  A ++F  +    +V  W A+ISG   
Sbjct: 314 KQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQ 373

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G    A  +F +M    V P+  T+  +LTA +    V   + +   +++ Y   P + 
Sbjct: 374 NGRTDRAMNLFCQMRREGVRPNHFTYSTILTANA---AVSPSQIHALVVKTNYENSPSVG 430

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A+ D   + G   EA   I  +  E D+V W A+LS 
Sbjct: 431 --TALSDSYSKIGDANEA-AKIFELIDEKDIVAWSAMLSG 467



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 101/218 (46%), Gaps = 2/218 (0%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P + +   N ++  F RN +  EAL  F  +  S    D  + + V+  C  L       
Sbjct: 53  PQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGK 112

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            VH   I+     +  +  +L+DMY K   ++  + VFD ++  +V  W ++++G   +G
Sbjct: 113 QVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNG 172

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
           L   A  +F++M++  + P+  TF  +L   +  G VE+G +    M  +  +   +   
Sbjct: 173 LNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHT-MVIKSGLDSTIFVG 231

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            +MV++  ++  + +A  +  SM    + V W ++++ 
Sbjct: 232 NSMVNMYSKSLMVSDAKAVFDSME-NRNAVSWNSMIAG 268


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  354 bits (908), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 175/409 (42%), Positives = 261/409 (63%), Gaps = 5/409 (1%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           VVS+N+MI   VR++   EAL  FREM +  ++P   T  SV+  CA LGAL    W+H+
Sbjct: 204 VVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHD 263

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
            I + +++    ++ ALIDMY+KCG ++ A  VF  ++  D   W+ M+   A HG   +
Sbjct: 264 YIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGRE 323

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           A ++F +M+   + PD +TFLG+L ACSH G+V EG +YFD MR  Y I   ++HYG + 
Sbjct: 324 AISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMR-EYGIVSGIKHYGCVT 382

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMGG 242
           DLL R+G +E AY  I  + ++P  ++WR LLSAC     +++G+     I+ +    GG
Sbjct: 383 DLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGG 442

Query: 243 DYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQA 302
           DYV+ SN+     RW+    VR++M +KGV K  G S +E+  ++H+F AGD SHP +Q 
Sbjct: 443 DYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQE 502

Query: 303 IDKILGSLIQRTKSEGFLPATELVL-MDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
             +++  +I++ K  G++P T  V  +++ EEEK  +L +HSEKLA+++G+L T+PGT +
Sbjct: 503 ARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTL 562

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           RI KNLR+C DCHS  K++S +  R II+RD  RFH FE G+CSCGDYW
Sbjct: 563 RIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 98/191 (51%), Gaps = 2/191 (1%)

Query: 29  FREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSK 88
           F  M+   V PD +TF S++  CA   A       H + ++     +  ++  LI+MY++
Sbjct: 126 FVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAE 185

Query: 89  CGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGL 148
           CG ++ A+ +FD +    V  +NAMI+      L  +A  +F +M+   + P S+T + +
Sbjct: 186 CGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISV 245

Query: 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
           L+AC+  G +E GR   D++R +  +   ++   A++D+  + G +E+A G+   M    
Sbjct: 246 LSACALLGALELGRWIHDYIR-KMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESR- 303

Query: 209 DVVVWRALLSA 219
           D   W  ++ A
Sbjct: 304 DKQAWSVMMVA 314


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  354 bits (908), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 178/409 (43%), Positives = 250/409 (61%), Gaps = 4/409 (0%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           VV++N++I    RN R +EAL  FRE+    ++P   T   V+  CA LG+L+   W+H 
Sbjct: 178 VVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHE 237

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
            + +   +    ++  LIDMY+KCG +  A  VF  + + D   W+A+I   A HG    
Sbjct: 238 YVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQ 297

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           A ++  +M+   V PD ITFLG+L ACSH GLVEEG +YF  M + Y I P ++HYG MV
Sbjct: 298 AISMLNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMV 357

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---MGG 242
           DLLGRAG ++EAY  I  + ++P  ++WR LLSAC T   +E+G+  I  I  L    GG
Sbjct: 358 DLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELDDSHGG 417

Query: 243 DYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQA 302
           DYV+ SN+     +WD   ++R+ M  KG  K  G S +E+  V+H+F AG+  H  +  
Sbjct: 418 DYVIFSNLCARYGKWDDVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAGEGVHSTSTT 477

Query: 303 IDKILGSLIQRTKSEGFLPATELVL-MDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
           + + L  L++  KS G++P T LV   D+ +EEKE  L +HSEKLA+ +G+L T PGT I
Sbjct: 478 LHRALDELVKELKSAGYVPDTSLVFYADMEDEEKEIILRYHSEKLAITFGLLNTPPGTTI 537

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           R+ KNLR+C DCH+  K IS +  R II+RD  RFH F+ G CSCGDYW
Sbjct: 538 RVVKNLRVCGDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 586



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 105/218 (48%), Gaps = 17/218 (7%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           ++V +N+M  G+   AR ++ LR                F   +   +++ AL     +H
Sbjct: 91  NIVLFNTMARGY---ARLNDPLRMITH------------FRRCLRLVSKVKALAEGKQLH 135

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
              ++  +  N  +   LI+MY+ CG I  ++ VFD +    V  +NA+I  +A +  A 
Sbjct: 136 CFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLARNNRAN 195

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           +A A+F +++   + P  +T L +L++C+  G ++ GR   ++++ +Y     ++    +
Sbjct: 196 EALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVK-KYGFDRYVKVNTTL 254

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRT 222
           +D+  + G +++A  +   M    D   W A++ A  T
Sbjct: 255 IDMYAKCGSLDDAVNVFRDMPKR-DTQAWSAIIVAYAT 291



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 59/123 (47%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D  +W+++I  +  +    +A+    EM   KV+PD+ TF  ++Y C+  G +   
Sbjct: 274 MPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEITFLGILYACSHNGLVEEG 333

Query: 61  Y-WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV-WNAMISGVA 118
           + + H +  E  I  +      ++D+  + G++  A +  D +      + W  ++S  +
Sbjct: 334 FEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACS 393

Query: 119 IHG 121
            HG
Sbjct: 394 THG 396


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  354 bits (908), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 175/409 (42%), Positives = 261/409 (63%), Gaps = 5/409 (1%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           VVS+N+MI   VR++   EAL  FREM +  ++P   T  SV+  CA LGAL    W+H+
Sbjct: 204 VVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHD 263

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
            I + +++    ++ ALIDMY+KCG ++ A  VF  ++  D   W+ M+   A HG   +
Sbjct: 264 YIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGRE 323

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           A ++F +M+   + PD +TFLG+L ACSH G+V EG +YFD MR  Y I   ++HYG + 
Sbjct: 324 AISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMR-EYGIVSGIKHYGCVT 382

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMGG 242
           DLL R+G +E AY  I  + ++P  ++WR LLSAC     +++G+     I+ +    GG
Sbjct: 383 DLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGG 442

Query: 243 DYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQA 302
           DYV+ SN+     RW+    VR++M +KGV K  G S +E+  ++H+F AGD SHP +Q 
Sbjct: 443 DYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQE 502

Query: 303 IDKILGSLIQRTKSEGFLPATELVL-MDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
             +++  +I++ K  G++P T  V  +++ EEEK  +L +HSEKLA+++G+L T+PGT +
Sbjct: 503 ARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTL 562

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           RI KNLR+C DCHS  K++S +  R II+RD  RFH FE G+CSCGDYW
Sbjct: 563 RIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 113/219 (51%), Gaps = 6/219 (2%)

Query: 5   DVVSWNSMIGGFVRNARF----DEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           DVV +N+++ G+ R        +EA R F  M+   V PD +TF S++  CA   A    
Sbjct: 98  DVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEG 157

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H + ++     +  ++  LI+MY++CG ++ A+ +FD +    V  +NAMI+     
Sbjct: 158 RQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRS 217

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            L  +A  +F +M+   + P S+T + +L+AC+  G +E GR   D++R +  +   ++ 
Sbjct: 218 SLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIR-KMRLDSLVKV 276

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++D+  + G +E+A G+   M    D   W  ++ A
Sbjct: 277 NTALIDMYAKCGSLEDAIGVFQDMESR-DKQAWSVMMVA 314


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  354 bits (908), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 183/410 (44%), Positives = 254/410 (61%), Gaps = 5/410 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K+VVSWN++I G  R    +  +R F +ML    EP  FT++SV+  CA  G+L    WV
Sbjct: 270 KNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWV 328

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I+   +    +   LIDMY+K G I+ AK+VF  + + D+  WN++ISG A HGL 
Sbjct: 329 HAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLG 388

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
           A+A  +F +M    V P+ ITFL +LTACSH GL++EG+ YF+ M+ ++ I+ Q+ H+  
Sbjct: 389 AEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMK-KHKIEAQVAHHVT 447

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM--- 240
           +VDLLGRAG + EA   I  M ++P   VW ALL ACR  K ++LG  A   I  L    
Sbjct: 448 VVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHD 507

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G +VLLSN+Y    R   A  VR++MK+ GV+K    SW+E+   +H F A D SHP  
Sbjct: 508 SGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMR 567

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + I ++   +  + K  G++P T  VL  ++++++E  L +HSEKLALA+ +LKT PG  
Sbjct: 568 EEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLT 627

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IRI KN+RIC DCHS  K  SR+L R IIVRD  RFH F  G+CSC DYW
Sbjct: 628 IRIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 677



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 117/219 (53%), Gaps = 3/219 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD+VSW  +I G+ ++ +  EAL  F +ML    +P++FT +S++       + +H 
Sbjct: 166 MPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHG 225

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++   ++N  + ++L+DMY++   ++ AK +F+++   +V  WNA+I+G A  
Sbjct: 226 RQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARK 285

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G       +F +M      P   T+  +L AC+  G +E+G+    H+  +   QP    
Sbjct: 286 GEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHV-IKSGGQPIAYI 343

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              ++D+  ++G I++A  +   +  + D+V W +++S 
Sbjct: 344 GNTLIDMYAKSGSIKDAKKVFRRLVKQ-DIVSWNSIISG 381



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 90/183 (49%), Gaps = 2/183 (1%)

Query: 37  VEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAK 96
           +EP++  ++ ++  C  L  L     +H  I     E + +L   +++MY+KCG ++ A+
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQ 160

Query: 97  EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
           ++FD +   D+  W  +ISG +  G A++A A+F KM      P+  T   LL A S  G
Sbjct: 161 DLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA-SGTG 219

Query: 157 LVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRAL 216
             +   +       +Y     +    +++D+  R  H+ EA  +  S+  + +VV W AL
Sbjct: 220 PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAK-NVVSWNAL 278

Query: 217 LSA 219
           ++ 
Sbjct: 279 IAG 281


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  354 bits (908), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 175/409 (42%), Positives = 261/409 (63%), Gaps = 5/409 (1%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           VVS+N+MI   VR++   EAL  FREM +  ++P   T  SV+  CA LGAL    W+H+
Sbjct: 204 VVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHD 263

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
            I + +++    ++ ALIDMY+KCG ++ A  VF  ++  D   W+ M+   A HG   +
Sbjct: 264 YIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGRE 323

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           A ++F +M+   + PD +TFLG+L ACSH G+V EG +YFD MR  Y I   ++HYG + 
Sbjct: 324 AISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMR-EYGIVSGIKHYGCVT 382

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMGG 242
           DLL R+G +E AY  I  + ++P  ++WR LLSAC     +++G+     I+ +    GG
Sbjct: 383 DLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGG 442

Query: 243 DYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQA 302
           DYV+ SN+     RW+    VR++M +KGV K  G S +E+  ++H+F AGD SHP +Q 
Sbjct: 443 DYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQE 502

Query: 303 IDKILGSLIQRTKSEGFLPATELVL-MDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
             +++  +I++ K  G++P T  V  +++ EEEK  +L +HSEKLA+++G+L T+PGT +
Sbjct: 503 ARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTL 562

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           RI KNLR+C DCHS  K++S +  R II+RD  RFH FE G+CSCGDYW
Sbjct: 563 RIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 98/191 (51%), Gaps = 2/191 (1%)

Query: 29  FREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSK 88
           F  M+   V PD +TF S++  CA   A       H + ++     +  ++  LI+MY++
Sbjct: 126 FVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAE 185

Query: 89  CGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGL 148
           CG ++ A+ +FD +    V  +NAMI+      L  +A  +F +M+   + P S+T + +
Sbjct: 186 CGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISV 245

Query: 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
           L+AC+  G +E GR   D++R +  +   ++   A++D+  + G +E+A G+   M    
Sbjct: 246 LSACALLGALELGRWIHDYIR-KMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESR- 303

Query: 209 DVVVWRALLSA 219
           D   W  ++ A
Sbjct: 304 DKQAWSVMMVA 314


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  354 bits (908), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 181/413 (43%), Positives = 241/413 (58%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D VSW ++I G+ +N  ++EA+    EM       ++ TF   +  CA + AL   
Sbjct: 338 MPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELG 397

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++    E   ++  AL+ MY KCG I  A +VF  VQ  D+  WN M++G A H
Sbjct: 398 KQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARH 457

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F  M    V PD IT +G+L+ACSH GL + G +YF  M   Y I P  +H
Sbjct: 458 GFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKH 517

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  M+DLLGRAG +EEA  LI +M  EPD   W ALL A R    +ELGE A   +  + 
Sbjct: 518 YACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKME 577

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    RW     +R  M++ GV+K+ G SW+E+   IH F  GD  H
Sbjct: 578 PHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKIHTFTVGDCFH 637

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE   I   L  L  + K EG++ +T+LVL DV EEEK+  L +HSEKLA+A+GIL    
Sbjct: 638 PEKGRIYAFLEELDLKMKHEGYVSSTKLVLHDVEEEEKKHMLKYHSEKLAVAFGILTMPS 697

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH+ IK IS+++ R+IIVRD  R+H F  G+CSC DYW
Sbjct: 698 GKPIRVMKNLRVCEDCHNAIKHISKIVGRLIIVRDSHRYHHFSEGICSCRDYW 750



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 18/219 (8%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KDVVSWN+M+ G+VR+   DEA    R++       +  ++  ++    R G L  A
Sbjct: 121 MPEKDVVSWNAMLSGYVRSGHVDEA----RDVFDRMPHKNSISWNGLLAAYVRSGRLEEA 176

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                 + E K +   I    L+  Y K   +  A+++FD +   D+  WN MISG A  
Sbjct: 177 ----RRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQD 232

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  + A  +F +    + + D  T+  ++ A    G+++E R+ FD M  +  +      
Sbjct: 233 GDLSQARRLFEE----SPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMS----- 283

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           Y  M+    +   ++    L   M   P++  W  ++S 
Sbjct: 284 YNVMIAGYAQYKRMDMGRELFEEMPF-PNIGSWNIMISG 321



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 119/261 (45%), Gaps = 36/261 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P +D++SWN+MI G+ ++    +A R F E   S V  D FT+ +++Y   + G L+ A
Sbjct: 214 IPVRDLISWNTMISGYAQDGDLSQARRLFEE---SPVR-DVFTWTAMVYAYVQDGMLDEA 269

Query: 61  YWVHNLIIEKK-IELNFILSA--------------------------ALIDMYSKCGKIQ 93
             V + + +K+ +  N +++                            +I  Y + G + 
Sbjct: 270 RRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLA 329

Query: 94  MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
            A+ +FD + + D   W A+I+G A +GL  +A  +  +M+      +  TF   L+AC+
Sbjct: 330 QARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACA 389

Query: 154 HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVW 213
               +E G++    +  R   +       A+V +  + G I+EAY +   +  + D+V W
Sbjct: 390 DIAALELGKQVHGQV-VRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHK-DIVSW 447

Query: 214 RALLSACRTFKRLELGEVAIV 234
             +L+    + R   G  A+ 
Sbjct: 448 NTMLAG---YARHGFGRQALT 465



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 43/166 (25%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++ VS+N+MI G++RNA+F  A   F +M      P K  F+               
Sbjct: 59  MPLRNSVSYNAMISGYLRNAKFSLARDLFDKM------PHKDLFS--------------- 97

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W            N +L+      Y++  +++ A+ +FD++   DV  WNAM+SG    
Sbjct: 98  -W------------NLMLTG-----YARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRS 139

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD 166
           G   +A  +F +M   N    SI++ GLL A    G +EE R+ F+
Sbjct: 140 GHVDEARDVFDRMPHKN----SISWNGLLAAYVRSGRLEEARRLFE 181



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 9/129 (6%)

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           N +   A+I  Y +  K  +A+++FD +   D+  WN M++G A +    DA  +F  M 
Sbjct: 63  NSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMP 122

Query: 135 MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194
                 D +++  +L+     G V+E R  FD M  + SI      +  ++    R+G +
Sbjct: 123 E----KDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSIS-----WNGLLAAYVRSGRL 173

Query: 195 EEAYGLITS 203
           EEA  L  S
Sbjct: 174 EEARRLFES 182



 Score = 42.7 bits (99), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 12/146 (8%)

Query: 83  IDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
           I  + + G   +A  VFD +  RN VS +NAMISG   +   + A  +F KM       D
Sbjct: 40  ISTHMRNGHCDLALCVFDAMPLRNSVS-YNAMISGYLRNAKFSLARDLFDKMPH----KD 94

Query: 142 SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
             ++  +LT  +    + + R  FD M  +  +      + AM+    R+GH++EA  + 
Sbjct: 95  LFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVS-----WNAMLSGYVRSGHVDEARDVF 149

Query: 202 TSMTMEPDVVVWRALLSACRTFKRLE 227
             M  + + + W  LL+A     RLE
Sbjct: 150 DRMPHK-NSISWNGLLAAYVRSGRLE 174


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  354 bits (908), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 175/411 (42%), Positives = 260/411 (63%), Gaps = 4/411 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +DVV+W +MI G+V+N    +A+  FR M+    +P+ +T A+++   + L +L+H   +
Sbjct: 375 RDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQI 434

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIHGL 122
           H          +  +S ALI MY+K G I  A+ VF+ +  + D   W +MI  +A HGL
Sbjct: 435 HASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGL 494

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F +M    + PD IT++G+L+AC+H GLVE+GR Y++ M++ + I P   HY 
Sbjct: 495 GEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYA 554

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            M+DL GRAG ++EA+  I +M +EPDV+ W +LL++C+  K +EL EVA   ++ I   
Sbjct: 555 CMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPE 614

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             G Y  L+N+Y    +W+ A N+R+ MK KGV+K QG SW+++   +H F   D  HP+
Sbjct: 615 NSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQ 674

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
             AI +++  + +  K  GF+P TE VL D+ EE KE  L HHSEKLA+A+G++ T   T
Sbjct: 675 RDAIYEMMAKIWKEIKKMGFVPDTESVLHDLEEELKEQILSHHSEKLAIAFGLICTPENT 734

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            +RI KNLR+C+DCHS IK IS+L+ R IIVRD  RFH F+ GLCSC DYW
Sbjct: 735 TLRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKNGLCSCRDYW 785



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 124/254 (48%), Gaps = 42/254 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+ D VSW +MI G+ +  +F+ A+  FREM+S  V P +FT  +V+  CA +  L   
Sbjct: 105 MPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIG 164

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ----------------- 103
             VH+ +++  +     ++ +L++MY+K G    AK VFD ++                 
Sbjct: 165 RKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQS 224

Query: 104 --------------RNDVSVWNAMISGVAIHGLAADASAIFTKMEM-FNVLPDSITFLGL 148
                           DV  WNAMISG   HG   +A  IF+KM M  +  PD  T    
Sbjct: 225 GLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASA 284

Query: 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG----AMVDLLGRAGHIEEAYGLI-TS 203
           L+AC++   ++ G++   H+     I+ + + +G    A++ +  ++G +E A  +I  S
Sbjct: 285 LSACANLENLKLGKQIHAHI-----IRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQS 339

Query: 204 MTMEPDVVVWRALL 217
           M    DV+ + ALL
Sbjct: 340 MISNLDVIAFTALL 353



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 123/274 (44%), Gaps = 38/274 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           M ++DVVSWN+MI G+ ++    EAL  F +ML  S  +PDKFT AS +  CA L  L  
Sbjct: 237 MIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKL 296

Query: 60  AYWVHNLII---------------------------EKKIE------LNFILSAALIDMY 86
              +H  II                           +K IE      L+ I   AL+D Y
Sbjct: 297 GKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGY 356

Query: 87  SKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFL 146
            K G I  A+ +FD+++  DV  W AMI G   +G   DA  +F  M      P++ T  
Sbjct: 357 VKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLA 416

Query: 147 GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM 206
            +L+  S    ++ GR+      +R      +    A++ +  ++G I +A  +   +  
Sbjct: 417 TMLSVSSSLASLDHGRQ-IHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHW 475

Query: 207 EPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           + D + W +++ A     +  LGE A+    R++
Sbjct: 476 KRDTITWTSMIIA---LAQHGLGEEALTLFERML 506



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 4/108 (3%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  II+  + L   L   L++ Y+K G I  A  VFD +    V  WN ++SG A  G 
Sbjct: 35  IHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGR 94

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS 170
             +A  +F +M      PDS+++  ++   +  G  E     F  M S
Sbjct: 95  LEEAHRVFEEMPE----PDSVSWTAMIVGYNQMGQFENAIGMFREMVS 138



 Score = 44.7 bits (104), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 81/181 (44%), Gaps = 8/181 (4%)

Query: 52  ARLGALNHAYWVHN-LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVW 110
           A+ G +  A+ V + + ++     N ILS      Y+K G+++ A  VF+ +   D   W
Sbjct: 59  AKTGFIYDAHRVFDEMPVKSVFSWNIILSG-----YAKGGRLEEAHRVFEEMPEPDSVSW 113

Query: 111 NAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS 170
            AMI G    G   +A  +F +M   +V P   T   +L +C+    +  GRK    +  
Sbjct: 114 TAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFV-V 172

Query: 171 RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE 230
           ++ +   +    +++++  ++G    A  +   M ++     W  ++S+      ++L +
Sbjct: 173 KHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLK-STSSWNTMISSHMQSGLVDLAQ 231

Query: 231 V 231
           V
Sbjct: 232 V 232


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  353 bits (907), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 177/414 (42%), Positives = 253/414 (61%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           MP +++VSWN+++ G+V+N+  D+ALR FR M+  + V+P+  T +SV+ GC+ L AL  
Sbjct: 200 MPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGF 259

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H   ++  +  N  +  +L+ MY KCG +  A  +F  +   DV  WNAMISG A 
Sbjct: 260 GKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQ 319

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +A  +F +M+   V P+ ITF+ +LTAC H GL + G + F+ M+  Y I+P+++
Sbjct: 320 HGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVD 379

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HY  MVDLL RAG +E A   I SM  EP    +  LL+ACR +K LE  E+A   ++  
Sbjct: 380 HYSCMVDLLCRAGKLERAVDFIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEK 439

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YV L+N+Y    +WD    VR  MK   V K+ G SW+E+ GV+H+F++ DR 
Sbjct: 440 DPQSAGAYVQLANIYAVANQWDDVSRVRRWMKDNTVVKTPGYSWIEIKGVLHEFRSNDRL 499

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+   I + LG L +R K  G++P  + VL DV E  K   L  HSEKLA+A+G++ T+
Sbjct: 500 HPQLYLIHEKLGQLAERMKEMGYVPDLDFVLHDVDETMKVQMLMRHSEKLAIAFGLISTA 559

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  +RI KNLR+C DCH+  K+IS +  R II+RD  RFH F GG CSC DYW
Sbjct: 560 HGMTLRIFKNLRVCGDCHNAAKVISMIEDREIILRDTTRFHHFRGGHCSCDDYW 613



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 103/220 (46%), Gaps = 12/220 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DV SWN+M+ G  ++   +EA   F  M       +  ++ +++ G A  G ++ A
Sbjct: 106 MPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMPVR----NSVSWNAMVSGFACSGDMSTA 161

Query: 61  -YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             W  N   EK+   + +L  A++  Y   G +  A + F+ +   ++  WNA+++G   
Sbjct: 162 EEWFRN-APEKE---DAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVK 217

Query: 120 HGLAADASAIF-TKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +  A DA  +F T +   NV P++ T   +L  CS+   +  G++       +  +   L
Sbjct: 218 NSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQ-IHQWCMKLLLSRNL 276

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
               ++V +  + G +  A  L   M    DVV W A++S
Sbjct: 277 TVGTSLVSMYCKCGDLSSACILFGEMHTR-DVVAWNAMIS 315



 Score = 40.0 bits (92), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 66/173 (38%), Gaps = 37/173 (21%)

Query: 90  GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM---------------- 133
           G    A+ +F ++   DV+ WN M+SG++  G   +A  +F  M                
Sbjct: 94  GDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMPVRNSVSWNAMVSGFA 153

Query: 134 ---------EMFNVLP---DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
                    E F   P   D++ +  +++     G V +  KYF+ M  R      L  +
Sbjct: 154 CSGDMSTAEEWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVR-----NLVSW 208

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTME----PDVVVWRALLSACRTFKRLELGE 230
            A+V    +  H ++A  L  +M  E    P+     ++L  C     L  G+
Sbjct: 209 NAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGK 261


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  353 bits (907), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 187/414 (45%), Positives = 261/414 (63%), Gaps = 9/414 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           MP ++VV+WNSMI G+ +N +   A+  F+EM+++K + PD+ T  SVI  C  LGAL  
Sbjct: 321 MPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALEL 380

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             WV   + E +I+L+     A+I MYS+CG ++ AK VF  +   DV  +N +ISG A 
Sbjct: 381 GNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAA 440

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +A  + + M+   + PD +TF+G+LTACSH GL+EEGRK F+ ++      P ++
Sbjct: 441 HGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK-----DPAID 495

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY  MVDLLGR G +E+A   +  M MEP   V+ +LL+A R  K++ELGE+A   +  L
Sbjct: 496 HYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFEL 555

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G+++LLSN+Y    RW   E +RE MKK GV+K+ G SW+E  G +H+F   DRS
Sbjct: 556 EPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRS 615

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           H  +  I ++L  L ++ +  G++     VL DV EEEKE  +  HSEKLA+ Y +L + 
Sbjct: 616 HERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSE 675

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  IR+ KNLR+C DCH+ IKMIS+L  RVIIVRD  RFH F  GLCSC DYW
Sbjct: 676 AGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 729



 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 129/220 (58%), Gaps = 3/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++ VVSWN+M+ G+ +N   +EALR F EM+++ +EPD+ T+ +VI  C+  G    A
Sbjct: 220 MPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLA 279

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +   + +K+I+LN  +  AL+DMY+K G +  A+++F+T+   +V  WN+MI+G A +
Sbjct: 280 ASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQN 339

Query: 121 GLAADASAIFTKMEMFNVL-PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           G +A A  +F +M     L PD +T + +++AC H G +E G  +     +   I+  + 
Sbjct: 340 GQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELG-NWVVRFLTENQIKLSIS 398

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            + AM+ +  R G +E+A  +   M    DVV +  L+S 
Sbjct: 399 GHNAMIFMYSRCGSMEDAKRVFQEMATR-DVVSYNTLISG 437



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 119/279 (42%), Gaps = 23/279 (8%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + +V  + SM+  +       + +  + +M    V PD F +  +I      G   HA+ 
Sbjct: 62  NPNVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGTGGIGFHAH- 120

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ--RNDVSVWNAMISGVAIH 120
               +++     +  +  A+IDMY++ G I  A++VFD +      V+ WNAM+SG    
Sbjct: 121 ----VLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKW 176

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                A  +F  M   NV    IT+  ++T  +    +E  R+YFD M  R  +      
Sbjct: 177 ESEGQAQWLFDVMPERNV----ITWTAMVTGYAKVKDLEAARRYFDCMPERSVVS----- 227

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSAC--RTFKRLELGEVAIVN 235
           + AM+    + G  EEA  L   M    +EPD   W  ++SAC  R    L    V  ++
Sbjct: 228 WNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLH 287

Query: 236 ISRLMGGDYV--LLSNMYCYLKRWDTAENVREIMKKKGV 272
             R+    +V   L +MY      D+A  +   M  + V
Sbjct: 288 QKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNV 326



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 112/264 (42%), Gaps = 50/264 (18%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D    N++I  + R      A + F E+     E     + +++ G  +  +   A W+ 
Sbjct: 129 DAFVRNAVIDMYARLGPIGHARKVFDEI--PDYERKVADWNAMVSGYWKWESEGQAQWLF 186

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
           +++ E+    N I   A++  Y+K   ++ A+  FD +    V  WNAM+SG A +GLA 
Sbjct: 187 DVMPER----NVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAE 242

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACS----------------------HC------- 155
           +A  +F +M    + PD  T++ +++ACS                      +C       
Sbjct: 243 EALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALL 302

Query: 156 ------GLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGH----IEEAYGLITSMT 205
                 G ++  RK F+ M  R  +      + +M+    + G     IE    +IT+  
Sbjct: 303 DMYAKFGDLDSARKLFNTMPGRNVVT-----WNSMIAGYAQNGQSAMAIELFKEMITAKK 357

Query: 206 MEPDVVVWRALLSACRTFKRLELG 229
           + PD V   +++SAC     LELG
Sbjct: 358 LTPDEVTMVSVISACGHLGALELG 381


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  353 bits (906), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 175/413 (42%), Positives = 244/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M DKDVVSW S++ G+  N  ++EA++ F +M  S V PD+   ASV+  CA L  ++  
Sbjct: 102 MVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFG 161

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++  +E +  +  +L+ MY+KCG I  A   FD +   DV  W A+I G A +
Sbjct: 162 QQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQN 221

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    +   + +M      PD ITF+GLL ACSH GL+  GR YF+ M   Y I+P  EH
Sbjct: 222 GRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEH 281

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  M+DLLGR+G + EA GL+  M + PD VVW+ALL+ACR  K LELGE+A  N+  L 
Sbjct: 282 YACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVHKELELGEMAAKNLFELE 341

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             +   YV+LSNMY    +W+ A  +R +M+ +G+ K  G SW+E    +  F + DR+H
Sbjct: 342 PMNSMPYVMLSNMYSAAGKWEDAARIRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNH 401

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    I   +  +I   K  G++P     L D  +E KE  L +HSEKLA+A+G+L    
Sbjct: 402 PLRNEIYSKIDEIIMLIKEAGYVPDMSFALHDTDDEVKELGLAYHSEKLAVAFGLLTVPQ 461

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KNLR+C DCH+ +K  S++  R II+RD   FH F  G CSCGDYW
Sbjct: 462 GAPIRIFKNLRVCGDCHTAMKYTSKVYARHIILRDSNCFHHFTEGRCSCGDYW 514



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 117/213 (54%), Gaps = 2/213 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D VSWNS+I G VR    ++AL FF++M S  ++ D++T  SV+   A +  + +A  VH
Sbjct: 5   DEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVH 64

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
            LII+   E   +++ ALIDMY+K GK+  A  VF  +   DV  W ++++G + +G   
Sbjct: 65  CLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYE 124

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           +A  +F KM +  V PD I    +L+AC+   +++ G++    +  +  ++  L    ++
Sbjct: 125 EAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATL-VKSGLESSLSVDNSL 183

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           V +  + G I +A     +M    DV+ W AL+
Sbjct: 184 VTMYAKCGSIVDANRAFDNMPTR-DVISWTALI 215


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  353 bits (906), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 178/409 (43%), Positives = 248/409 (60%), Gaps = 5/409 (1%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D V WNS+I  F +++  DEAL  ++ M       D+ T  SV+  C  L  L      H
Sbjct: 448 DSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAH 507

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             ++  K + + IL+ AL+DMY KCG ++ AK +F+ + + DV  W+ MI+G+A +G + 
Sbjct: 508 VHVL--KFDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSM 565

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           +A  +F  M++    P+ IT LG+L ACSH GLV EG  YF  M + Y I P  EHYG M
Sbjct: 566 EALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCM 625

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD- 243
           +DLLGRA  +++   LI  M  EPDVV WR LL ACR  + ++L   A   I +L   D 
Sbjct: 626 LDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDT 685

Query: 244 --YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
             YVLLSN+Y   KRW+    VR  MKK+G+RK  G SW+E+   IH F  GD+SHP+  
Sbjct: 686 GAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKSHPQID 745

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
            I++ L   I R    G++P T  VL D+  E++E +L +HSEKLA+ +GI+       I
Sbjct: 746 EINRQLNQFICRLAGAGYVPDTNFVLQDLEGEQREDSLRYHSEKLAIVFGIMSFPKEKTI 805

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           RI KNL+IC DCH + K+I+ L +R I++RD IR+H F+ G+CSCGDYW
Sbjct: 806 RIWKNLKICGDCHKFAKLIAELEQRHIVIRDPIRYHHFQDGVCSCGDYW 854



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 111/219 (50%), Gaps = 7/219 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++VVSW +MI  +      D A+R    M    V P+ FTF+SV+  C RL  L   
Sbjct: 346 MPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDLKQ- 404

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ I++  +E +  + +ALID+YSK G++  A +VF  +   D  VWN++I+  A H
Sbjct: 405 --LHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQH 462

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A  ++  M       D  T   +L AC+   L+E GR+   H+         L  
Sbjct: 463 SDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHV---LKFDQDLIL 519

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++D+  + G +E+A  +   M  + DV+ W  +++ 
Sbjct: 520 NNALLDMYCKCGSLEDAKFIFNRMA-KKDVISWSTMIAG 557



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 110/286 (38%), Gaps = 44/286 (15%)

Query: 25  ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84
           A+     M    V  D  T++ +I  C   GA+     VH  I          L+  LI+
Sbjct: 269 AMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILIN 328

Query: 85  MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSIT 144
           MY K   ++ A+ +FD +   +V  W  MIS  +   L   A  +   M    V+P+  T
Sbjct: 329 MYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFT 388

Query: 145 FLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
           F  +L AC     +++   +      +  ++  +    A++D+  + G + EA  +   M
Sbjct: 389 FSSVLRACERLYDLKQLHSWI----MKVGLESDVFVRSALIDVYSKMGELLEALKVFREM 444

Query: 205 TMEPDVVVWRAL-----------------------------------LSACRTFKRLELG 229
            M  D VVW ++                                   L AC +   LELG
Sbjct: 445 -MTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELG 503

Query: 230 EVAIVNISRLMGGDYVL---LSNMYCYLKRWDTAENVREIMKKKGV 272
             A V++ +    D +L   L +MYC     + A+ +   M KK V
Sbjct: 504 RQAHVHVLKF-DQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDV 548



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 2/118 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KDV+SW++MI G  +N    EAL  F  M     +P+  T   V++ C+  G +N  
Sbjct: 543 MAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEG 602

Query: 61  -YWVHNLIIEKKIELNFILSAALIDMYSKCGKI-QMAKEVFDTVQRNDVSVWNAMISG 116
            Y+  ++     I+        ++D+  +  K+  M K + +     DV  W  ++  
Sbjct: 603 WYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDA 660


>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 177/416 (42%), Positives = 269/416 (64%), Gaps = 9/416 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNH 59
           MP  D+ SWN++I GF + +R  +A+  F+ M +   + P+  T    +  C++LGAL  
Sbjct: 164 MPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKE 223

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV--WNAMISGV 117
              VH  I+E+K++ N  +   +IDMY+KCG +  A  VF+ + R D S+  WN MI   
Sbjct: 224 GESVHKYIVEEKLDSNVQVCNVVIDMYAKCGSMDKAYWVFENM-RCDKSLITWNTMIMAF 282

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           A+HG    A  +F K+    + PD++++L +L AC+H GLVE+G K F+ M  R  ++P 
Sbjct: 283 AMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQR-GLEPN 341

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IV 234
           ++HYG+MVDLLGRAG ++EAY +++S+   P++V+W+ LL ACRT+  +E+ E+A   +V
Sbjct: 342 IKHYGSMVDLLGRAGRLKEAYDIVSSLPF-PNMVLWQTLLGACRTYGDVEMAELASRKLV 400

Query: 235 NISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294
            +  +  G +VLLSN+Y   +RWD    VR+ M+++ V+K+ G S++E+ G +++F  GD
Sbjct: 401 EMGFISCGXFVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGD 460

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
           +SH   + I   L  +  R K+ G+   T  VL D+ +E+KE  L +HSEKLA+A+G+  
Sbjct: 461 QSHSSCREIYAKLDEINLRIKAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTC 520

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T  GT I++ KNLRIC DCH  IK+IS++  R IIVRDR RFHRF+ GLCSC DYW
Sbjct: 521 TEEGTPIQVIKNLRICGDCHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 115/222 (51%), Gaps = 4/222 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKV--EPDKFTFASVIYGCARLGALN 58
           +P      WN++I G   ++    A+ ++R M +S      D  T +  +  CAR  A +
Sbjct: 61  IPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARS 120

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
            A  +H+ ++      + +L   L+D Y+K G + +A+++FD + + D++ WNA+I+G A
Sbjct: 121 EAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFA 180

Query: 119 IHGLAADASAIFTKMEM-FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
                ADA   F +M++  N+ P+++T  G L ACS  G ++EG     ++     +   
Sbjct: 181 QGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEE-KLDSN 239

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++    ++D+  + G +++AY +  +M  +  ++ W  ++ A
Sbjct: 240 VQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMA 281


>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 184/436 (42%), Positives = 266/436 (61%), Gaps = 27/436 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFF-------------------REMLSSKVEPDK 41
           MP++DVVSWNSMI G+++    + A   F                   +EMLS  + PD 
Sbjct: 170 MPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKEMLSLGLRPDG 229

Query: 42  FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNF-ILSAALIDMYSKCGKIQMAKEVFD 100
               SV+   A LG +    W+H  +   KIEL+   + +ALIDMYSKCG I+ A  VF 
Sbjct: 230 PAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFR 289

Query: 101 TV-QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVE 159
           ++  R ++  WN+MISG+AIHGLA +A  IF +ME  ++ P+ ITFLGLL+ CSH GLVE
Sbjct: 290 SISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVE 349

Query: 160 EGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           EG+ YF+ M  +Y I P+++HYG M+DL GRAG +E+A G+I +M  E D++ W+A+LSA
Sbjct: 350 EGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSA 409

Query: 220 CRTFKRLELGEVAIVNISRLMGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQ 276
                 +E+G+ A +    L   D   YVLLSN+Y    RWD    +R +M+++GV+K  
Sbjct: 410 SMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIA 469

Query: 277 GKSWLELAGVIHQFKAGDR--SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEE 334
           G S + + G +H+F  G    S    Q + KI   ++ R K +G+ P    VL+D+ +E 
Sbjct: 470 GCSSMLVNGKVHEFLLGKELDSSYSGQVLAKI-AEVVSRLKLQGYEPDLTQVLLDIEDEG 528

Query: 335 KEGNLYHHSEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRI 394
           KE  L  HSEK+A+A+G++  +    I I KNLR+C DCH ++K++S++  R II+RD+ 
Sbjct: 529 KESLLNLHSEKMAIAFGLIHINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQN 588

Query: 395 RFHRFEGGLCSCGDYW 410
           RFH FE G CSC +YW
Sbjct: 589 RFHHFENGCCSCNEYW 604



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 112/234 (47%), Gaps = 29/234 (12%)

Query: 11  SMIGGFVRNARFDEALRFFREMLS-----SKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           ++I GF   +   E+L  +  MLS     S VE   F+  SV+  C +L A +    VH 
Sbjct: 77  ALIKGFSDTSNPVESLILYARMLSCLNYSSGVE---FSIPSVLKACGKLLAFDEGRQVHG 133

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
            +++  +  +  +  +++ MY   G+I++A+ VFD +   DV  WN+MI+G    G    
Sbjct: 134 QVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIEL 193

Query: 126 ASAIFTKM-----------------EMFN--VLPDSITFLGLLTACSHCGLVEEGRKYFD 166
           AS +F +M                 EM +  + PD    + +L+A +  G VEEG K+  
Sbjct: 194 ASELFDEMPERDLVSCNAMIDGYGKEMLSLGLRPDGPAIVSVLSAIADLGFVEEG-KWLH 252

Query: 167 HMRSRYSIQPQLEHYG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              S   I+      G A++D+  + G+IE AY +  S++   ++  W +++S 
Sbjct: 253 AYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISG 306


>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 180/414 (43%), Positives = 248/414 (59%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNH 59
           MP++D+VSW+SMI  F +N    EAL  F+ M L   V+PD+    SV+   + LG L  
Sbjct: 145 MPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLEL 204

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             W+   I    +E    L  AL+DM+S+CG I+ +  VFD +   +V  W A+I+G+A+
Sbjct: 205 GKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAV 264

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG +A+A  +F +M      PD +TF G+L ACSH GLV EG   F+ +R+ Y ++P  E
Sbjct: 265 HGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPE 324

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HYG MVDLLGRAG + EA   +  M + P+ ++WR LL AC     +EL E     I+ L
Sbjct: 325 HYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINEL 384

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                GDYVLLSN+Y  + RW     VR  M++K + K  G S + +  +IH+F AGD +
Sbjct: 385 DSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPGCSLINVNHLIHEFVAGDNN 444

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+ ++I + L S+I   K  G+ P    VL D+ EEEKE  L +HSEKLA+A+ +L   
Sbjct: 445 HPQFESIREFLVSMIDSLKVVGYTPDISNVLFDIEEEEKESTLGYHSEKLAVAFALLCFK 504

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
               IR+ KNLRICHDCH ++K  S +  R II+RDR RFH F  G CSC DYW
Sbjct: 505 DSRTIRVMKNLRICHDCHCFMKYASDVFEREIIIRDRNRFHHFSKGSCSCRDYW 558



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 98/190 (51%), Gaps = 6/190 (3%)

Query: 31  EMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCG 90
           +M  + V PD FTF  V+  CARL        +H+L+ +   + +  +   LI  Y  CG
Sbjct: 77  KMTMAGVSPDHFTFPFVLKACARLQT---GLDLHSLLFKLGFDSDVYVQNGLIHFYGCCG 133

Query: 91  KIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMF-NVLPDSITFLGLL 149
            +  A + F+ +   D+  W++MI+  A +G   +A A+F +M++   V PD +  L ++
Sbjct: 134 FLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVV 193

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
           +A S  G +E G K+     SR  ++  +    A+VD+  R G IEE+  +   M  E +
Sbjct: 194 SAISILGDLELG-KWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMG-ERN 251

Query: 210 VVVWRALLSA 219
           V+ W AL++ 
Sbjct: 252 VLTWTALING 261


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 177/415 (42%), Positives = 258/415 (62%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKV-EPDKFTFASVIYGCARLGALNH 59
           MP K++ +WN +I  + +N +  EAL  F E+  SK+ +PD+ T  S +  CA+LGA++ 
Sbjct: 319 MPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDL 378

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             W+H  I  + I LN  L ++L+DMY+KCG ++ A EVF +V+  DV VW+AMI+G+ +
Sbjct: 379 GGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGM 438

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG    A  +F +M+   V P+S+TF  +L ACSH GLV+EGR +F  M   Y + P+++
Sbjct: 439 HGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMK 498

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY  MVD+LGRAG +EEA  LI  M+  P   VW ALL AC     +ELGE+A   + +L
Sbjct: 499 HYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKL 558

Query: 240 MG---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G  VLLSN+Y    RW+    +R++M+   ++K  G S +E  G +H+F  GD +
Sbjct: 559 EPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNT 618

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEE-KEGNLYHHSEKLALAYGILKT 355
           HP +  I   L  +  + KS G+ P    +L  + E++ KE  L  HSEKLA+A+G++  
Sbjct: 619 HPLSSNIYSKLEEIATKLKSVGYEPNKSHLLQLIEEDDLKEQALSLHSEKLAIAFGLVTL 678

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           +P   IR+ KNLRIC DCH++ K++SR+  R I++RDR RFH F  G CSC DYW
Sbjct: 679 APSQPIRVVKNLRICGDCHAFAKLVSRVYDRDILLRDRYRFHHFRDGHCSCMDYW 733



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 119/247 (48%), Gaps = 34/247 (13%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDVVSWNSMI  F +    ++AL  F +M    V P+  T   V+  CA+   L    WV
Sbjct: 190 KDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWV 249

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDV---------------- 107
            + I  K I+++  L  A++DMY+KCG +  A+++FD +   DV                
Sbjct: 250 CSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDY 309

Query: 108 ---------------SVWNAMISGVAIHGLAADASAIFTKMEMFNVL-PDSITFLGLLTA 151
                          + WN +IS    +G   +A AIF ++++  +  PD +T +  L+A
Sbjct: 310 DAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSA 369

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           C+  G ++ G     +++ R  I        ++VD+  + G +E+A  +  S+  E DV 
Sbjct: 370 CAQLGAIDLGGWIHVYIK-REGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVE-ERDVY 427

Query: 212 VWRALLS 218
           VW A+++
Sbjct: 428 VWSAMIA 434



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 124/248 (50%), Gaps = 15/248 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE--PDKFTFASVIYGCARLGALN 58
           +P  ++ +WN++I  +  ++   ++   F ++L  K E  P+KFTF  VI   + L A  
Sbjct: 85  IPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLD-KCEDLPNKFTFPFVIKAASELKASR 143

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               VH + I+    ++  +  +L+  Y  CG + MA+ +F  +   DV  WN+MIS  A
Sbjct: 144 VGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFA 203

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
                 DA  +F KME  NV+P+S+T +G+L+AC+    +E GR    ++  R  I+  L
Sbjct: 204 QGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIE-RKGIKVDL 262

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL----------SACRTFKRLEL 228
               AM+D+  + G +++A  L   M  E DV  W  +L          +A   F  + +
Sbjct: 263 TLCNAMLDMYTKCGSVDDAQKLFDEMP-ERDVFSWTIMLDGYAKMGDYDAARLVFNAMPV 321

Query: 229 GEVAIVNI 236
            E+A  N+
Sbjct: 322 KEIAAWNV 329


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 177/413 (42%), Positives = 255/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+ ++VSWN+MIG  V+ + F+EA+   REM +  ++ D+ T   +   C  LGAL+ A
Sbjct: 416 MPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLA 475

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W++  I +  I ++  L  AL+DM+S+CG    A  VF+ +++ DVS W A I   A+ 
Sbjct: 476 KWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVE 535

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A  A  +F +M   +V  D   F+ LLTA SH G V++GR+ F  M   + + PQ+ H
Sbjct: 536 GNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVH 595

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG MVDLLGRAG +EEA+ L+ SM ++P+ V+W + L+ACR  K +E    A   I++L 
Sbjct: 596 YGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLA 655

Query: 241 G---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G +VLLSN+Y    +W+    VR  MK+KG +K  G S +E+ G+I +F +GD SH
Sbjct: 656 PEKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESH 715

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            E   I  +L  +  R    G++P T  VL+DV E+EKE  L  HSEKLA+AYG++ T  
Sbjct: 716 TENAQIGLMLQEINCRISQVGYVPDTTNVLVDVDEQEKEHLLSRHSEKLAMAYGLINTGK 775

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCHS+ K++S+L  R I VRD  R+H F+ G CSC D+W
Sbjct: 776 GIPIRVVKNLRMCSDCHSFAKLVSKLYGREITVRDNNRYHFFKEGFCSCRDFW 828



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 113/229 (49%), Gaps = 2/229 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++VVSW S+I G+       EA+  F EM+   VEP+  T    I  CA+L  L   
Sbjct: 183 MLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELG 242

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V NL+ E  ++ N ++  AL+DMY KCG +   +E+FD     ++ ++N ++S    H
Sbjct: 243 KKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQH 302

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GLA +   +  +M      PD +T L  + AC+  G +  G+    ++  R  ++     
Sbjct: 303 GLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYV-FRNGLERLDNI 361

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG 229
             A++D+  + G  E A  +  SM+    VV W +L++       LEL 
Sbjct: 362 SNAIIDMYMKCGKREAACKVFDSMS-NKTVVTWNSLIAGLVRDGELELA 409



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 111/244 (45%), Gaps = 33/244 (13%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           DK++V +N+++  +V++    E L    EML     PDK T  S I  CA+LG L+    
Sbjct: 286 DKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKS 345

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            H  +    +E    +S A+IDMY KCGK + A +VFD++    V  WN++I+G+   G 
Sbjct: 346 SHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGE 405

Query: 123 AADASAIFTKMEMFNVLP-------------------------------DSITFLGLLTA 151
              A  IF +M   N++                                D +T +G+ +A
Sbjct: 406 LELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASA 465

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           C + G ++  +  + ++  +  I   ++   A+VD+  R G    A  +  +M  + DV 
Sbjct: 466 CGYLGALDLAKWIYTYIE-KNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENME-KRDVS 523

Query: 212 VWRA 215
            W A
Sbjct: 524 AWTA 527



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 112/212 (52%), Gaps = 3/212 (1%)

Query: 8   SWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           + N++I G+  +    EA+  +  M+    + PD FTF  ++  C+++ A +    VH +
Sbjct: 88  TCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGV 147

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           +++  +  +  ++ +LI  Y+ CGK+ + ++VFD +   +V  W ++I+G ++  +A +A
Sbjct: 148 VVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEA 207

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186
             +F +M    V P+ +T +  ++AC+    +E G+K  + M +   ++       A++D
Sbjct: 208 VCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLM-TELGVKSNTLVVNALLD 266

Query: 187 LLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
           +  + G +     +    + + ++V++  ++S
Sbjct: 267 MYMKCGDMYAVREIFDEFS-DKNLVMYNTIMS 297



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 63/159 (39%), Gaps = 44/159 (27%)

Query: 111 NAMISGVAIHGLAADASAIFTKMEM-FNVLPDSITFLGLLTACSH--------------- 154
           N +I G A  GL  +A  I+  M +   ++PD+ TF  LL+ACS                
Sbjct: 90  NTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVV 149

Query: 155 --------------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194
                               CG V+ GRK FD M  R  +      + ++++        
Sbjct: 150 KMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVS-----WTSLINGYSVVNMA 204

Query: 195 EEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGE 230
           +EA  L   M    +EP+ V     +SAC   K LELG+
Sbjct: 205 KEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGK 243


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 175/410 (42%), Positives = 252/410 (61%), Gaps = 4/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K+ VSWN++I GF R    + AL  F EML +  E   FT++SV    ARLGAL    WV
Sbjct: 216 KNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWV 275

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I+ + ++       L+DMY+K G +  A++VFD V   D+  WN M++  A +GL 
Sbjct: 276 HAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLG 335

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A + F +M    +  + +TFL +LTACSH GLV+EG++YF+ M+  Y ++P+++H+  
Sbjct: 336 KEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFEMMK-EYDLEPEIDHFVT 394

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM--- 240
           +V LLGRAG +  A   I  M +EP   VW ALL+ACR  K  ++G+ A  ++  L    
Sbjct: 395 VVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDD 454

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G  VLL N+Y    +WD A  VR IMK  GV+K    SW+E+   +H F A D +HP A
Sbjct: 455 SGPPVLLYNIYASTGQWDAAARVRRIMKTTGVKKEPACSWVEMENSVHMFVANDDTHPRA 514

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + I K+ G + ++ + EG++P  + VL+ V ++E+E NL +HSEKLALA+ +++   G  
Sbjct: 515 EEIYKMWGQISKKIRKEGYVPDMDYVLLRVDDQEREANLQYHSEKLALAFALIEMPAGAT 574

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IRI KN+RIC DCHS  K IS++  R I+VRD  RFH F  G CSC DYW
Sbjct: 575 IRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSNGSCSCADYW 624



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 124/256 (48%), Gaps = 8/256 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD+VSW S+I G+ +N   +EA+     ML  + +P+ FTFAS++            
Sbjct: 112 MRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIG 171

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L ++     +  + +AL+DMY++CG + MA  VFD +   +   WNA+ISG A  
Sbjct: 172 RQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARK 231

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLE 179
           G    A   F +M          T+  + ++ +  G +E+G+    HM +SR  +     
Sbjct: 232 GDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAG 291

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           +   ++D+  ++G + +A  +   +  + D+V W  +L+A   F +  LG+ A+ +   +
Sbjct: 292 N--TLLDMYAKSGSMIDARKVFDRVD-DKDLVTWNTMLTA---FAQYGLGKEAVSHFEEM 345

Query: 240 -MGGDYVLLSNMYCYL 254
              G Y+      C L
Sbjct: 346 RKSGIYLNQVTFLCIL 361



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 97/215 (45%), Gaps = 5/215 (2%)

Query: 26  LRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM 85
           LR    + + ++ P    + + I  CA+   L  A  VH  +   +   +  L  +LI +
Sbjct: 36  LRDLDLLDAGELAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHL 95

Query: 86  YSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145
           Y KCG +  A++VFD ++R D+  W ++I+G A + +  +A  +   M      P+  TF
Sbjct: 96  YCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTF 155

Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
             LL A         GR+    +  +      +    A++D+  R G ++ A  +   + 
Sbjct: 156 ASLLKAAGAHADSGIGRQ-IHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLD 214

Query: 206 MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
            + + V W AL+S    F R   GE A++  + ++
Sbjct: 215 SK-NGVSWNALISG---FARKGDGETALMTFAEML 245


>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 180/414 (43%), Positives = 248/414 (59%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNH 59
           MP++D+VSW+SMI  F +N    EAL  F+ M L   V+PD+    SV+   + LG L  
Sbjct: 145 MPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLEL 204

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             W+   I    +E    L  AL+DM+S+CG I+ +  VFD +   +V  W A+I+G+A+
Sbjct: 205 GKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAV 264

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG +A+A  +F +M      PD +TF G+L ACSH GLV EG   F+ +R+ Y ++P  E
Sbjct: 265 HGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPE 324

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HYG MVDLLGRAG + EA   +  M + P+ ++WR LL AC     +EL E     I+ L
Sbjct: 325 HYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINEL 384

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                GDYVLLSN+Y  + RW     VR  M++K + K  G S + +  +IH+F AGD +
Sbjct: 385 DSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPGCSLINVNHLIHEFVAGDNN 444

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+ ++I + L S+I   K  G+ P    VL D+ EEEKE  L +HSEKLA+A+ +L   
Sbjct: 445 HPQFESIREFLVSMIDSLKVVGYTPDISNVLFDIEEEEKESTLGYHSEKLAVAFALLCFK 504

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
               IR+ KNLRICHDCH ++K  S +  R II+RDR RFH F  G CSC DYW
Sbjct: 505 DSRTIRVMKNLRICHDCHCFMKYASDVFEREIIIRDRNRFHHFSKGSCSCRDYW 558



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 99/190 (52%), Gaps = 6/190 (3%)

Query: 31  EMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCG 90
           +M  + V PD FTF  V+  CARL        +H+L+ +   + +  +   LI  Y  CG
Sbjct: 77  KMAMAGVSPDHFTFPFVLKACARLQT---GLDLHSLLFKLGFDSDVYVQNGLIHFYGCCG 133

Query: 91  KIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMF-NVLPDSITFLGLL 149
            +  A +VF+ +   D+  W++MI+  A +G   +A A+F +M++   V PD +  L ++
Sbjct: 134 FLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVV 193

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
           +A S  G +E G K+     SR  ++  +    A+VD+  R G IEE+  +   M  E +
Sbjct: 194 SAISILGDLELG-KWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMG-ERN 251

Query: 210 VVVWRALLSA 219
           V+ W AL++ 
Sbjct: 252 VLTWTALING 261


>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
          Length = 625

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 177/417 (42%), Positives = 262/417 (62%), Gaps = 8/417 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++ +VSW++MI   +R   F EALR F +M+ +   PD    +SV+  CA LGAL   
Sbjct: 210 MPERGLVSWSAMIDACIRAGEFSEALRMFDQMMGNGFRPDAVVLSSVLKACAHLGALERG 269

Query: 61  YWVHNLIIEKKI---ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
            WVH  +  + +     N +L  AL+DMY KCG +  A  VFD VQ  DV +WNAMI G+
Sbjct: 270 RWVHRFLKAEGLGRSPDNVMLETALVDMYCKCGCMDEAWWVFDGVQSQDVVLWNAMIGGL 329

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           A++G    A  +F +M     +P+  TF+ +L AC+H G V+EG++ F  M   + I+P+
Sbjct: 330 AMNGHGKRALELFRRMLDMGFVPNESTFVVVLCACTHTGRVDEGKEIFRSM-CDHGIEPR 388

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IV 234
            EHYG + DLLGRAG +EEA  ++  M MEP    W AL+S+C     + +GE     ++
Sbjct: 389 REHYGCLADLLGRAGLLEEAEAVLLDMPMEPHASQWGALMSSCLMHNNVGVGERVGKKLI 448

Query: 235 NISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294
            +    GG YV+L N+Y     W+ A+ +R++M+++G +K  G S++E  G++H+F++GD
Sbjct: 449 ELEPDDGGRYVVLFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFIEWNGLVHEFRSGD 508

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGN-LYHHSEKLALAYGIL 353
             HP+ + I  +L  + QR +  G++  T  VLMD+ +EE +GN L +HSE+LALA+GIL
Sbjct: 509 TRHPQTRQIYALLEDMEQRLQLIGYVKDTSQVLMDMDDEEDKGNTLSYHSERLALAFGIL 568

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T     IRI KNLR+C DCH + K++S+L +R II+RDR RFH F GG+CSC D+W
Sbjct: 569 NTPRHMPIRIVKNLRVCRDCHVYAKLVSKLYQREIIMRDRHRFHLFRGGVCSCNDFW 625



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 7/143 (4%)

Query: 81  ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP 140
            ++  Y KCG ++ A+EVF  +    +  W+AMI      G  ++A  +F +M      P
Sbjct: 189 TMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMMGNGFRP 248

Query: 141 DSITFLGLLTACSHCGLVEEGRKYFDHMRS----RYSIQPQLEHYGAMVDLLGRAGHIEE 196
           D++    +L AC+H G +E GR     +++    R      LE   A+VD+  + G ++E
Sbjct: 249 DAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLE--TALVDMYCKCGCMDE 306

Query: 197 AYGLITSMTMEPDVVVWRALLSA 219
           A+ +   +  + DVV+W A++  
Sbjct: 307 AWWVFDGVQSQ-DVVLWNAMIGG 328


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 170/414 (41%), Positives = 260/414 (62%), Gaps = 5/414 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +K++V WN+MI GF +N    +AL  F +MLSSK+ PD+ +    +  C+++ AL   
Sbjct: 563 MEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLG 622

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++  +  +  ++ +LIDMY+KCG ++ ++ +FD V       WN +I+G  IH
Sbjct: 623 KELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIH 682

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F  M+     PDS+TF+ LLTAC+H GLV EG +Y   M+S + I+P+LEH
Sbjct: 683 GHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEH 742

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  +VD+LGRAG + EA  L+  +  +PD  +W +LLS+CR ++ L++GE  + N    +
Sbjct: 743 YACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGE-KVANKLLEL 801

Query: 241 GGD----YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
           G D    YVL+SN Y  L +WD    +R+ MK+ G++K  G SW+E+ G + +F  GD S
Sbjct: 802 GPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFLVGDES 861

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
             ++  I +    L ++    G+ P T  VL ++ E+EK   L +HSEKLA+++G+L T+
Sbjct: 862 LLQSMKIQQTWIELEKKINKIGYKPDTSCVLHELEEDEKIKILRNHSEKLAISFGLLNTA 921

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            GT +R+ KNLRIC DCH+ IK++S++ +R IIVRD  RFH F+ G CSCGDYW
Sbjct: 922 KGTTLRVCKNLRICVDCHNAIKLVSKIDKREIIVRDNKRFHHFKNGFCSCGDYW 975



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 121/259 (46%), Gaps = 43/259 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K V SWN++IGG V+N    +AL  +  M  S +EPD FT AS++  CARL +L+  
Sbjct: 462 MESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCG 521

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  ++    EL+  +  +L+ +Y +CGKI +AK  FD ++  ++  WN MI+G + +
Sbjct: 522 KEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQN 581

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSH-------------------------- 154
               DA  +F +M    + PD I+ +G L ACS                           
Sbjct: 582 EFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVT 641

Query: 155 ---------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
                    CG +E+ +  FD +  +  +      +  ++   G  GH  +A  L  SM 
Sbjct: 642 CSLIDMYAKCGCMEQSQNIFDRVHLKGEVT-----WNVLITGYGIHGHGRKAIELFKSMQ 696

Query: 206 ---MEPDVVVWRALLSACR 221
                PD V + ALL+AC 
Sbjct: 697 NAGFRPDSVTFIALLTACN 715



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 123/277 (44%), Gaps = 58/277 (20%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK--VEPDKFTFASVIYGCARLGALN 58
           MP +++VSWNS++   + N  F+E+   F+ +L+    + PD  T  +VI  CAR G + 
Sbjct: 257 MPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVR 316

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
                H L ++  +     ++++L+DMYSKCG +  A+ +FDT ++N +S WN+MI G +
Sbjct: 317 LGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDTNEKNVIS-WNSMIGGYS 375

Query: 119 IHGLAADASAIFTKMEM-----------FNVLP---DSITFLGL---------------- 148
                  A  +  KM+M            NVLP   + I FL L                
Sbjct: 376 KDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSD 435

Query: 149 -------LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEA---- 197
                  +   + CG +      F  M S+      +  + A++      GH++      
Sbjct: 436 ELVANAFVAGYAKCGSLHYAEGVFCGMESK-----MVSSWNALI-----GGHVQNGFPRK 485

Query: 198 ----YGLITSMTMEPDVVVWRALLSACRTFKRLELGE 230
               Y L+    +EPD+    +LLSAC   K L  G+
Sbjct: 486 ALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGK 522



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 115/219 (52%), Gaps = 6/219 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYW 62
           K++  WN+++ G++RN+ F +A+  F EM+S ++  PD FT   VI  C  +  +     
Sbjct: 158 KNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEA 217

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH   ++ K+  +  +  ALI MY K G ++ A +VFD + + ++  WN+++     +G+
Sbjct: 218 VHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGV 277

Query: 123 AADASAIFTKMEMFN--VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
             ++  +F  +   +  ++PD  T + ++  C+  G V  G   F  +  +  +  +L+ 
Sbjct: 278 FEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGM-VFHGLALKLGLCGELKV 336

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +++D+  + G++ EA  L    T E +V+ W +++  
Sbjct: 337 NSSLLDMYSKCGYLCEARVLFD--TNEKNVISWNSMIGG 373



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 107/220 (48%), Gaps = 6/220 (2%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNHAY 61
           +K+V+SWNSMIGG+ ++  F  A    R+M +  KV+ ++ T  +V+  C          
Sbjct: 361 EKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLK 420

Query: 62  WVHNLIIEKK-IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            +H   +    I+ + +++ A +  Y+KCG +  A+ VF  ++   VS WNA+I G   +
Sbjct: 421 EIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQN 480

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLE 179
           G    A  ++  M    + PD  T   LL+AC+    +  G++    M R+ + +   + 
Sbjct: 481 GFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFI- 539

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              ++V L  + G I  A     +M  E ++V W  +++ 
Sbjct: 540 -CISLVSLYVQCGKILLAKLFFDNME-EKNLVCWNTMING 577



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 90/207 (43%), Gaps = 8/207 (3%)

Query: 20  ARFDEALRFFR----EMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLI-IEKKIEL 74
              ++A  F +    +++SS     K     ++  C     +     +HN I      + 
Sbjct: 68  GNLNQAFNFLQSNLNDVVSSSNSKPKQLIGLLLQLCGEYKNIEIGRKIHNFISTSPHFQN 127

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM- 133
           + +L   L+ MYS C     +  VF+  +R ++ +WNA++SG   + L  DA  +F +M 
Sbjct: 128 DVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMI 187

Query: 134 EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGH 193
            +   +PD+ T   ++ AC     V  G         +  +   +    A++ + G+ G 
Sbjct: 188 SLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHG-FALKTKVLSDVFVGNALIAMYGKFGF 246

Query: 194 IEEAYGLITSMTMEPDVVVWRALLSAC 220
           +E A  +   M  + ++V W +++ AC
Sbjct: 247 VESAVKVFDKMP-QRNLVSWNSVMYAC 272


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 173/413 (41%), Positives = 248/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP K+ +SW  M+ G+V     ++AL+ F +M +  V+P  +T+A  I  C  LGAL H 
Sbjct: 396 MPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHG 455

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++   E +     AL+ MY+KCG +  A+ VF  +   D   WNAMIS +  H
Sbjct: 456 RQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQH 515

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M    + PD I+FL +LTAC+H GLV+EG  YF+ M+  + I P  +H
Sbjct: 516 GHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDH 575

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  ++DLLGR+G I EA  LI +M  EP   +W A+LS CRT   +E G  A   + R++
Sbjct: 576 YARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMI 635

Query: 241 G---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y+LLSN Y    RW  A  VR++M+ +GV+K  G SW+E+   IH F  GD  H
Sbjct: 636 PQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKH 695

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PEAQ + + L  +  R +  G++P T+ VL D+   EKE  L+ HSEKLA+ +G+LK  P
Sbjct: 696 PEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPP 755

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  + + KNLRIC DCH+ +  +S+ + R I+VRD  RFH F+ G CSCG+YW
Sbjct: 756 GATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 808



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 126/286 (44%), Gaps = 73/286 (25%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           DVV WN+MI G+V++    +A   FR M+S KV  D+FTF SV+  CA  G   H   VH
Sbjct: 265 DVV-WNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVH 323

Query: 65  NLIIEKKIELNFILSA------ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA------ 112
             II  +++ NF+  A      AL+ +YSK GKI +AK +FDT+   DV  WN       
Sbjct: 324 GQII--RLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYI 381

Query: 113 -------------------------MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLG 147
                                    M+SG    GL+ DA  +F +M   +V P   T+ G
Sbjct: 382 DSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAG 441

Query: 148 LLTACSHCGLVEEGRKYFDHM----------------------------RSRYSIQPQLE 179
            + AC   G ++ GR+   H+                            R  + + P L+
Sbjct: 442 AIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLD 501

Query: 180 --HYGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSAC 220
              + AM+  LG+ GH  EA  L   M  E   PD + +  +L+AC
Sbjct: 502 SVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTAC 547



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 107/255 (41%), Gaps = 41/255 (16%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLG--ALNHA 60
           +D V  N+M+  F R +    A+  F  +L S  + PD ++F ++I    ++   A  H 
Sbjct: 125 RDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHC 184

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKC------------------------------- 89
             +H  +++        +S ALI +Y KC                               
Sbjct: 185 TQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGY 244

Query: 90  ---GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFL 146
              G +  A+ VF+ V      VWNAMISG    G+ ADA  +F +M    V  D  TF 
Sbjct: 245 VRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFT 304

Query: 147 GLLTACSHCGLVEEGRKYFDH---MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
            +L+AC++ G    G+        ++  +  +  L    A+V L  + G I  A  +  +
Sbjct: 305 SVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDT 364

Query: 204 MTMEPDVVVWRALLS 218
           M ++ DVV W  +LS
Sbjct: 365 MNLK-DVVSWNTILS 378


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 184/414 (44%), Positives = 254/414 (61%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           MP+K++VSWN++I G V+ + F+EA+  F  M S + V  D  T  S+   C  LGAL+ 
Sbjct: 429 MPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDL 488

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
           A W++  I +  I+L+  L   L+DM+S+CG  + A  +F+++   DVS W A I  +A+
Sbjct: 489 AKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAM 548

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            G A  A  +F  M    + PD + F+G LTACSH GLV++G++ F  M   + + P+  
Sbjct: 549 AGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDV 608

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HYG MVDLLGRAG +EEA  LI  M MEP+ V+W +LL+ACR    +E+   A   I  L
Sbjct: 609 HYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVL 668

Query: 240 M---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVLLSN+Y    RW+    VR  MK+KG+RK  G S +++ G  H+F +GD S
Sbjct: 669 APERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDES 728

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HPE   I+ +L  + QR    G +P    VLMDV E+EK   L  HSEKLA+AYG++ ++
Sbjct: 729 HPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSN 788

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            GT IRI KNLR+C DCHS+ K  S++  R II+RD  RFH    G CSCGD+W
Sbjct: 789 KGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 115/232 (49%), Gaps = 8/232 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALR-FFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           M +++VVSW SMI G+ R     +A+  FFR +   +V P+  T   VI  CA+L  L  
Sbjct: 195 MSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLET 254

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              V+  I    IE+N ++ +AL+DMY KC  I +AK +FD    +++ + NAM S    
Sbjct: 255 GEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVR 314

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            GL  +A  +F  M    V PD I+ L  +++CS    +  G+    ++  R   +    
Sbjct: 315 QGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVL-RNGFESWDN 373

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV 231
              A++D+  +    + A+ +   M+    VV W ++++       +E GEV
Sbjct: 374 ICNALIDMYMKCHRQDTAFRIFDRMS-NKTVVTWNSIVAG-----YVENGEV 419



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 102/190 (53%), Gaps = 2/190 (1%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           +NS+I G+  +   +EA+  F  M++S + PDK+TF   +  CA+  A  +   +H LI+
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
           +     +  +  +L+  Y++CG++  A++VFD +   +V  W +MI G A    A DA  
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221

Query: 129 IFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDL 187
           +F +M     V P+S+T + +++AC+    +E G K +  +R+   I+       A+VD+
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNS-GIEVNDLMVSALVDM 280

Query: 188 LGRAGHIEEA 197
             +   I+ A
Sbjct: 281 YMKCNAIDVA 290



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 98/236 (41%), Gaps = 34/236 (14%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIE 69
           N+M   +VR     EAL  F  M+ S V PD+ +  S I  C++L  +      H  ++ 
Sbjct: 306 NAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLR 365

Query: 70  KKIELNFILSAALIDMYSKC-------------------------------GKIQMAKEV 98
              E    +  ALIDMY KC                               G++  A E 
Sbjct: 366 NGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWET 425

Query: 99  FDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME-MFNVLPDSITFLGLLTACSHCGL 157
           F+T+   ++  WN +ISG+    L  +A  +F  M+    V  D +T + + +AC H G 
Sbjct: 426 FETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGA 485

Query: 158 VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVW 213
           ++   K+  +   +  IQ  +     +VD+  R G  E A  +  S+T   DV  W
Sbjct: 486 LDLA-KWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLT-NRDVSAW 539



 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 45/179 (25%)

Query: 92  IQMAKEVFDTVQRNDVS-VWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150
           +  AKEVF+  +      ++N++I G A  GL  +A  +F +M    + PD  TF   L+
Sbjct: 83  LSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLS 142

Query: 151 AC-----------------------------------SHCGLVEEGRKYFDHMRSRYSIQ 175
           AC                                   + CG ++  RK FD M  R  + 
Sbjct: 143 ACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVS 202

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTME----PDVVVWRALLSACRTFKRLELGE 230
                + +M+    R    ++A  L   M  +    P+ V    ++SAC   + LE GE
Sbjct: 203 -----WTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGE 256


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 177/436 (40%), Positives = 256/436 (58%), Gaps = 26/436 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-----------------LSSKVEPDKFT 43
           M  +D VSWN+MI G+V + R+  AL    EM                      +P+  T
Sbjct: 461 MEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAIT 520

Query: 44  FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
             +V+ GCA L A+     +H   I   +  +  + +AL+DMY+KCG + +++ VF+ + 
Sbjct: 521 LMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMP 580

Query: 104 RNDVSVWNAMISGVAIHGLAADASAIFTKM-----EMFNVLPDSITFLGLLTACSHCGLV 158
             +V  WN +I    +HG   +A  +F  M           P+ +TF+ +  ACSH GL+
Sbjct: 581 NKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLI 640

Query: 159 EEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV-VWRALL 217
            EG   F  M+  + ++P  +HY  +VDLLGRAG +EEAY L+ +M  E D V  W +LL
Sbjct: 641 SEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLL 700

Query: 218 SACRTFKRLELGEVAIVNISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRK 274
            ACR  + +ELGEVA  N+  L   +   YVLLSN+Y     W+ A  VR+ M++ GV+K
Sbjct: 701 GACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKK 760

Query: 275 SQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEE 334
             G SW+E    +H+F AGD SHP+++ +   L +L ++ + EG++P T  VL +V E+E
Sbjct: 761 EPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDE 820

Query: 335 KEGNLYHHSEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRI 394
           KE  L  HSEKLA+A+GIL T PGT IR++KNLR+C+DCH+  K IS+++ R IIVRD  
Sbjct: 821 KENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVR 880

Query: 395 RFHRFEGGLCSCGDYW 410
           RFH F+ G CSCGDYW
Sbjct: 881 RFHHFKEGTCSCGDYW 896



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 123/226 (54%), Gaps = 18/226 (7%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+D+VSWN+MI  F ++ RF EAL FFR M+   VE D  T ASV+  C+ L  L+    
Sbjct: 259 DRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKE 318

Query: 63  VHNLIIEKK--IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           +H  ++     IE +F+  +AL+DMY  C +++  + VFD +    + +WNAMISG A +
Sbjct: 319 IHAYVLRNNDLIENSFV-GSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARN 377

Query: 121 GLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL- 178
           GL   A  +F +M ++  +LP++ T   ++ AC HC       + F +  S +    +L 
Sbjct: 378 GLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHC-------EAFSNKESIHGYAVKLG 430

Query: 179 ---EHY--GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              + Y   A++D+  R G ++ +  +  SM +  D V W  +++ 
Sbjct: 431 FKEDRYVQNALMDMYSRMGKMDISETIFDSMEVR-DRVSWNTMITG 475



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 112/266 (42%), Gaps = 59/266 (22%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+D VSWNS I    R  ++++AL  FR M    +E   FT  SV   C+ LG +     
Sbjct: 156 DRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVM----- 210

Query: 63  VHNLIIEKKI--------ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMI 114
            H L + K++        +     + AL+ MY+K G++  +K +F++    D+  WN MI
Sbjct: 211 -HGLRLGKQLHGYSLRVGDQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMI 269

Query: 115 SGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH-------------------- 154
           S  +     ++A A F  M +  V  D +T   +L ACSH                    
Sbjct: 270 SSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDL 329

Query: 155 ----------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAY 198
                           C  VE GR+ FDH+  R     ++E + AM+    R G  E+A 
Sbjct: 330 IENSFVGSALVDMYCNCRQVESGRRVFDHILGR-----RIELWNAMISGYARNGLDEKAL 384

Query: 199 GLITSMT----MEPDVVVWRALLSAC 220
            L   M     + P+     +++ AC
Sbjct: 385 ILFIEMIKVAGLLPNTTTMASVMPAC 410



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 113/230 (49%), Gaps = 20/230 (8%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYWVHNLI 67
           WN+MI G+ RN   ++AL  F EM+  + + P+  T ASV+  C    A ++   +H   
Sbjct: 367 WNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYA 426

Query: 68  IEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADAS 127
           ++   + +  +  AL+DMYS+ GK+ +++ +FD+++  D   WN MI+G  + G  ++A 
Sbjct: 427 VKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNAL 486

Query: 128 AIFTKME-MFNVL----------------PDSITFLGLLTACSHCGLVEEGRKYFDHMRS 170
            +  +M+ M N                  P++IT + +L  C+    + +G++   +   
Sbjct: 487 VLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYA-I 545

Query: 171 RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
           R  +   +    A+VD+  + G +  +  +   M    +V+ W  L+ AC
Sbjct: 546 RNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMP-NKNVITWNVLIMAC 594



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P +   SW   +    R+  F EA+  + EM  S   PD F F +V+   + L  L    
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 62  WVHNLIIEKKIELNFILSA-ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            +H   ++     + +  A  L++MY KCG I    +VFD +   D   WN+ I+ +   
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRF 172

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR--KYFDHMRSRYSIQPQL 178
                A   F  M+M N+   S T + +  ACS+ G++   R  K       R   Q   
Sbjct: 173 EKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTF 232

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            +  A++ +  + G ++++  L  S  ++ D+V W  ++S+
Sbjct: 233 TN-NALMAMYAKLGRVDDSKALFESF-VDRDMVSWNTMISS 271


>gi|357124741|ref|XP_003564056.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Brachypodium distachyon]
          Length = 594

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 175/418 (41%), Positives = 254/418 (60%), Gaps = 16/418 (3%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSS------KVEPDKFTFASVIYGCARLGAL 57
           +DV SWN+++ G  +      AL  F  ++ S      + EP++ T  + +  CA++G+L
Sbjct: 182 RDVASWNALLAGLAQGTEPTLALALFHRLVGSFRELPPREEPNEVTIVAALSACAQIGSL 241

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV--WNAMIS 115
               +VH    +  +  N  +  ALIDMYSKCG + +A EVF +++R D ++  +N  I 
Sbjct: 242 QDGLYVHEFARKIGVNGNVRVCNALIDMYSKCGSLDLALEVFHSIKREDRTLVSYNTAIQ 301

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
            V++HG   DA  +F +M  F + PD +T++ +L  C+H GLV++G + F  MR    + 
Sbjct: 302 AVSMHGHGGDALRLFDEMPTF-IEPDEVTYIAVLCGCNHAGLVDDGLRVFHSMR----VL 356

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVN 235
           P ++HYGA+VDLLGRAG + EAY  I SM    D+V+W+ LL A +T   +EL E+A   
Sbjct: 357 PNVKHYGAVVDLLGRAGRLAEAYDTIVSMPFPADIVLWQTLLGAAKTHGDVELAELAATK 416

Query: 236 ISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKA 292
           +  L   + GDYVLLSN+Y    RW     VR+ M+   VRK  G S+ E++GV+H+F  
Sbjct: 417 LDELGSNVDGDYVLLSNVYASKARWADVRRVRDTMRSNDVRKVPGFSYTEISGVMHKFIN 476

Query: 293 GDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGI 352
           GD+ HP  Q I + L  ++ R    G+ P T  VL D+ EEEK+  L +HSEKLA+A+G+
Sbjct: 477 GDKEHPRWQEIYRALEEIVSRIGELGYEPETSNVLHDIGEEEKQYALSYHSEKLAIAFGL 536

Query: 353 LKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + T PG  +R+ KNLR C DCH   K+IS+   RVII+RDR RFH+FE G CSC DYW
Sbjct: 537 IATPPGETLRVIKNLRTCGDCHVVAKLISKAYGRVIIIRDRARFHQFEDGQCSCKDYW 594



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 72/141 (51%), Gaps = 7/141 (4%)

Query: 78  LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM-EMF 136
           L   L+D Y+KCG +  A++VFD +   DV+ WNA+++G+A       A A+F ++   F
Sbjct: 155 LITTLVDSYAKCGDLASARKVFDEMVVRDVASWNALLAGLAQGTEPTLALALFHRLVGSF 214

Query: 137 NVL-----PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRA 191
             L     P+ +T +  L+AC+  G +++G  Y      +  +   +    A++D+  + 
Sbjct: 215 RELPPREEPNEVTIVAALSACAQIGSLQDG-LYVHEFARKIGVNGNVRVCNALIDMYSKC 273

Query: 192 GHIEEAYGLITSMTMEPDVVV 212
           G ++ A  +  S+  E   +V
Sbjct: 274 GSLDLALEVFHSIKREDRTLV 294



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 66/136 (48%), Gaps = 11/136 (8%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+ +VS+N+ I     +    +ALR F EM  + +EPD+ T+ +V+ GC   G ++    
Sbjct: 290 DRTLVSYNTAIQAVSMHGHGGDALRLFDEM-PTFIEPDEVTYIAVLCGCNHAGLVDDGLR 348

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR----NDVSVWNAMISGVA 118
           V + +   ++  N     A++D+  + G++    E +DT+       D+ +W  ++    
Sbjct: 349 VFHSM---RVLPNVKHYGAVVDLLGRAGRL---AEAYDTIVSMPFPADIVLWQTLLGAAK 402

Query: 119 IHGLAADASAIFTKME 134
            HG    A    TK++
Sbjct: 403 THGDVELAELAATKLD 418


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 171/413 (41%), Positives = 257/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPD+ VV+W+SM  G+V+N  +++AL  FR+   + ++ D+F  +SVI  CA L A+   
Sbjct: 226 MPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEG 285

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V+ L+ +     N  ++++LIDMY+KCG I+ + +VF  V++ +V +WNAMISG++ H
Sbjct: 286 KQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRH 345

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
             + +   +F KM+   + P+ +TF+ +L+AC H GLV++G+KYFD M   + + P + H
Sbjct: 346 ARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFH 405

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  MVD L RAG I EAY LI+ +       +W +LL++CRT   LEL EVA   + +I 
Sbjct: 406 YSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIE 465

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G+Y+LLSNMY    +WD    +R+++K+  V+K +GKSW+E+   +H F  G+R+H
Sbjct: 466 PHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNH 525

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+   I   L  ++   +  G+   T+  L  V E  K+  L HHSEKLA   G+L   P
Sbjct: 526 PKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPP 585

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IRI KNLRIC DCHS++K+ S+   R +IVRD  RFH F+ G CSCGD+W
Sbjct: 586 NAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 115/219 (52%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP + +VSWN+MIG   +N   +EAL    +M        +FT +SV+  CA   AL+  
Sbjct: 125 MPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSEC 184

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   I+  ++LN  ++ AL+D+Y+KCG ++ A  VF+++    V  W++M +G   +
Sbjct: 185 QLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQN 244

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            +   A A+F K     +  D      ++ AC+    + EG++  + + S+      +  
Sbjct: 245 EMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQ-VNALLSKSGFCSNIFV 303

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +++D+  + G IEE+Y +   +  + +VV+W A++S 
Sbjct: 304 ASSLIDMYAKCGGIEESYKVFRDVE-KRNVVLWNAMISG 341



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 8/169 (4%)

Query: 51  CARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVW 110
           CA+   L      H  I+   ++ + + S  LI+MYSKCG +  A++VFD +    +  W
Sbjct: 74  CAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSW 133

Query: 111 NAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC-SHCGLVEEGRKYFDHMR 169
           N MI  +  +G   +A  +  +M+         T   +L AC + C L E   +      
Sbjct: 134 NTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSE--CQLLHAFA 191

Query: 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD--VVVWRAL 216
            + ++   +    A++D+  + G +++A  +  SM   PD  VV W ++
Sbjct: 192 IKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESM---PDRSVVTWSSM 237


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 177/410 (43%), Positives = 253/410 (61%), Gaps = 3/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDVVSWNS+I G+ +     +AL  F  M+     PD+ T  SV+  C ++ AL     V
Sbjct: 292 KDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATV 351

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
            + ++++   +N ++  ALI MY+ CG +  A  VFD +   ++     M++G  IHG  
Sbjct: 352 QSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRG 411

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A +IF +M    V PD   F  +L+ACSH GLV+EG++ F  M   YS++P+  HY  
Sbjct: 412 REAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSC 471

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG-- 241
           +VDLLGRAG+++EAY +I +M ++P+  VW ALLSACR  + ++L  ++   +  L    
Sbjct: 472 LVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDG 531

Query: 242 -GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
              YV LSN+Y   +RW+  ENVR ++ K+ +RK    S++EL  ++HQF  GD SH ++
Sbjct: 532 VSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQS 591

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
             I   L  L ++ K  G+ P T LVL DV EE KE  L+ HSE+LALA+ ++ T PGT 
Sbjct: 592 DDIYAKLKDLNEQLKKAGYKPDTSLVLYDVEEEIKEKMLWDHSERLALAFALINTGPGTT 651

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IRI+KNLR+C DCH+ IKMIS+L  R II+RD  RFH F  GLCSCG YW
Sbjct: 652 IRITKNLRVCGDCHTVIKMISKLTNREIIMRDICRFHHFRDGLCSCGGYW 701



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 107/258 (41%), Gaps = 46/258 (17%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D+ SWN+M+ GFV+N     A   F +M       D+ T  +++  C  +  L     +
Sbjct: 188 RDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEI 247

Query: 64  HNLII---EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           H  ++   E     N  L  ++IDMY  C  +  A+++F+ ++  DV  WN++ISG    
Sbjct: 248 HGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKC 307

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTAC---------------------------- 152
           G A  A  +F +M +   +PD +T + +L AC                            
Sbjct: 308 GDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVG 367

Query: 153 -------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
                  ++CG +    + FD M  +      L     MV   G  G   EA  +   M 
Sbjct: 368 TALIGMYANCGSLVCACRVFDEMPEK-----NLPACTVMVTGFGIHGRGREAISIFYEML 422

Query: 206 ---MEPDVVVWRALLSAC 220
              + PD  ++ A+LSAC
Sbjct: 423 GKGVTPDEGIFTAVLSAC 440



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 111/238 (46%), Gaps = 8/238 (3%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K+   WNSMI G+  N     AL  + +ML    +PD FT+  V+  C  L        V
Sbjct: 87  KNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKV 146

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H L++   +E +  +  +++ MY K G ++ A+ VFD +   D++ WN M+SG   +G A
Sbjct: 147 HALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEA 206

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY-- 181
             A  +F  M     + D  T L LL+AC     ++ G++   ++            +  
Sbjct: 207 RGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLM 266

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACR----TFKRLEL-GEVAIV 234
            +++D+      +  A  L   + ++ DVV W +L+S        F+ LEL G + +V
Sbjct: 267 NSIIDMYCNCESVSCARKLFEGLRVK-DVVSWNSLISGYEKCGDAFQALELFGRMVVV 323



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 73/146 (50%), Gaps = 4/146 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K++ +   M+ GF  + R  EA+  F EML   V PD+  F +V+  C+  G ++  
Sbjct: 390 MPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEG 449

Query: 61  YWV-HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             + + +  +  +E      + L+D+  + G +  A  V + ++ + +  VW A++S   
Sbjct: 450 KEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACR 509

Query: 119 IHGLAADASAIFTKMEMFNVLPDSIT 144
           +H       A+ +  ++F + PD ++
Sbjct: 510 LH--RNVKLAVISAQKLFELNPDGVS 533



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 1/131 (0%)

Query: 34  SSKVEPDKFTFASVIYGCARLGALNHAYWVH-NLIIEKKIELNFILSAALIDMYSKCGKI 92
           SS    D     +++       +L  A  +H ++     +  N  L+  L   Y+ CG +
Sbjct: 15  SSTSTFDSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHM 74

Query: 93  QMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC 152
             A+ +FD +   +  +WN+MI G A +   + A  ++ KM  F   PD+ T+  +L AC
Sbjct: 75  PYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKAC 134

Query: 153 SHCGLVEEGRK 163
               L E GRK
Sbjct: 135 GDLLLREMGRK 145


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 183/406 (45%), Positives = 256/406 (63%), Gaps = 11/406 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD VS+++++ G+V+N R +EA   F++M +  VEPD  T  S+I  C+ L AL H 
Sbjct: 286 MAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHG 345

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H  +I + +     +  ALIDMY+KCG+I ++++VF+ +   D+  WN MI+G  IH
Sbjct: 346 RCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIH 405

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A+A+F +M      PD +TF+ LL+ACSH GLV EG+ +F  M   Y + P++EH
Sbjct: 406 GLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEH 465

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MVDLL R G ++EAY  I SM +  DV VW ALL ACR +K ++LG+     +SR++
Sbjct: 466 YICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGK----KVSRMI 521

Query: 241 -------GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
                   G++VLLSN+Y    R+D A  VR I K +G +KS G SW+E+ G +H F  G
Sbjct: 522 QELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGG 581

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           D+SHP++  I + L +++   K  G+ P T  VL D+ EEEKE  L  HSEKLA+AYGIL
Sbjct: 582 DQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGIL 641

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRF 399
             S    I ++KNLR+C DCH+ IK IS + RR IIVRD  RFH F
Sbjct: 642 SLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHF 687



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 113/221 (51%), Gaps = 7/221 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKV---EPDKFTFASVIYGCARLGAL 57
           MP ++ V+W+++IGGFV  +R  +A   F+ ML+  +    P   + AS +  CA L  L
Sbjct: 184 MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASLDHL 241

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
                +H L+ +  +  +     +L+ MY+K G I  A  +FD +   D   ++A++SG 
Sbjct: 242 RMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGY 301

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
             +G A +A  +F KM+  NV PD+ T + L+ ACSH   ++ GR     +  R  +  +
Sbjct: 302 VQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASE 360

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
                A++D+  + G I+ +  +   M    D+V W  +++
Sbjct: 361 TSICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIA 400



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 132/327 (40%), Gaps = 60/327 (18%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFF--REMLSSKVEPDKFTFASVIYGCARLGALN 58
           MP +D+V+WN+M+ G+  +  +  A+      +M   ++ P+  T  +++   A+ GAL 
Sbjct: 71  MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALA 130

Query: 59  HAYWVHNLII----------EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS 108
               VH   I          + K+    +L  AL+DMY+KCG +  A+ VFD +   +  
Sbjct: 131 QGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV 190

Query: 109 VWNAMISGVAIHGLAADASAIFTKM-----------------------------EMFNVL 139
            W+A+I G  +      A  +F  M                             E  + L
Sbjct: 191 TWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHAL 250

Query: 140 -------PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAG 192
                   D      LL+  +  GL+++    FD M  + ++      Y A+V    + G
Sbjct: 251 LAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS-----YSALVSGYVQNG 305

Query: 193 HIEEAYGLITSM---TMEPDVVVWRALLSACRTFKRLELGEVAIVN-ISRLMGGDYVL-- 246
             EEA+ +   M    +EPD     +L+ AC     L+ G  +  + I R +  +  +  
Sbjct: 306 RAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICN 365

Query: 247 -LSNMYCYLKRWDTAENVREIMKKKGV 272
            L +MY    R D +  V  +M  + +
Sbjct: 366 ALIDMYAKCGRIDLSRQVFNMMPSRDI 392



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 69/132 (52%), Gaps = 2/132 (1%)

Query: 32  MLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK 91
           ML  +V P+ +TF   +  C+ L   +    +H   I   ++ +  +S AL+DMY KC  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA--IFTKMEMFNVLPDSITFLGLL 149
           +  A  +F T+   D+  WNAM++G A HG+   A A  +  +M+M  + P++ T + LL
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 150 TACSHCGLVEEG 161
              +  G + +G
Sbjct: 121 PLLAQQGALAQG 132


>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
 gi|194689034|gb|ACF78601.1| unknown [Zea mays]
 gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
          Length = 606

 Score =  352 bits (902), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 178/409 (43%), Positives = 253/409 (61%), Gaps = 5/409 (1%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           VVS+N+MI   VR++R  EAL  FREM +  + P   T  SV+  CA LGAL    W+H+
Sbjct: 199 VVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLSACALLGALQLGRWLHD 258

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
            + +  +     +S AL+DMY+KCG ++ A  VF  ++  D   W+ MI   A HG   +
Sbjct: 259 YVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESRDRQAWSVMIVAYANHGYGRE 318

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           A ++F +M+   + PD ITFLGLL ACSH GLV EG +YFD M+  + I P ++HYG + 
Sbjct: 319 AISLFEEMKKQGMKPDDITFLGLLYACSHSGLVSEGLRYFDDMKD-HGIVPGIKHYGCVT 377

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMGG 242
           DLL R+G +E AY  I  + + P  ++WR LLSAC     +ELG+     I+ +    GG
Sbjct: 378 DLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDVELGKRVFERILELDDSHGG 437

Query: 243 DYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQA 302
           DYV+ SN+      W+    VR++M  KGV K  G S +E+   +H+F AGD  HP++Q 
Sbjct: 438 DYVIFSNLCANTGYWEEMNRVRKLMSDKGVVKVPGCSSIEIDNTVHEFFAGDGRHPKSQE 497

Query: 303 IDKILGSLIQRTKSEGFLPATELVL-MDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
             K++  +I + K  G++P T  V  +++ EEEK  +L +HSEKLA+A+G+L T+PG  +
Sbjct: 498 ARKMVDEVIDQLKLVGYIPDTSHVFHVEMGEEEKAISLKYHSEKLAIAFGLLNTAPGATL 557

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           R+ KNLR+C DCHS  K +S +  R II+RD  RFH FE G+CSCGDYW
Sbjct: 558 RVVKNLRVCPDCHSMAKFVSMVFNRRIILRDLNRFHHFERGICSCGDYW 606



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 107/220 (48%), Gaps = 7/220 (3%)

Query: 5   DVVSWNSMIGGFVRNARFDEA-----LRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           D V +N+++ G+ R++    +     +R F  ML   V PD +TF S++  CA   A  H
Sbjct: 92  DAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRMLEEGVAPDTYTFVSLLKACAAARAGEH 151

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
               H + ++     +  +   LI+MY++CG  + A+  F     + V  +NAMI+    
Sbjct: 152 GRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAARVTFGRADGDCVVSYNAMIAAAVR 211

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
                +A  +F +M+   + P  +T + +L+AC+  G ++ GR   D++R +  +   ++
Sbjct: 212 SSRPGEALVLFREMQAKGLNPTPVTVISVLSACALLGALQLGRWLHDYVR-KLGLGSLVK 270

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A+VD+  + G +E+A  +   M    D   W  ++ A
Sbjct: 271 VSTALVDMYAKCGSLEDAIAVFQGMESR-DRQAWSVMIVA 309



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 1/134 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D  +W+ MI  +  +    EA+  F EM    ++PD  TF  ++Y C+  G ++  
Sbjct: 295 MESRDRQAWSVMIVAYANHGYGREAISLFEEMKKQGMKPDDITFLGLLYACSHSGLVSEG 354

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV-WNAMISGVAI 119
               + + +  I         + D+ ++ G+++ A +  D +  N   + W  ++S    
Sbjct: 355 LRYFDDMKDHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGG 414

Query: 120 HGLAADASAIFTKM 133
           HG       +F ++
Sbjct: 415 HGDVELGKRVFERI 428


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  352 bits (902), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 168/413 (40%), Positives = 252/413 (61%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD+VSWN+MIGG+ +N+  +EAL  F EM     +P+  T A ++  CA L AL   
Sbjct: 413 MQVKDIVSWNTMIGGYSKNSLPNEALNLFVEM-QYNSKPNSITMACILPACASLAALERG 471

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I+     L+  ++ AL+DMY KCG + +A+ +FD +   D+  W  MI+G  +H
Sbjct: 472 QEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMH 531

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  ++A A F +M    + PD ++F+ +L ACSH GL++EG  +F+ MR+   I+P+ EH
Sbjct: 532 GYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEH 591

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  +VDLL RAG++ +AY  I  M +EPD  +W ALL  CR +  ++L E    ++  L 
Sbjct: 592 YACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELE 651

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLL+N+Y   ++W+  + +RE + ++G+RK+ G SW+E+ G +H F  GD SH
Sbjct: 652 PENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSH 711

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P A  I+ +L     R K EG  P     L+   + EKE  L  HSEK+A+A+GIL   P
Sbjct: 712 PLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAFGILSLPP 771

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  +R++KNLR+C DCH   K +S++++R II+RD  RFH F+ G CSC  +W
Sbjct: 772 GKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 824



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 124/220 (56%), Gaps = 5/220 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++ VVSW SMI G+ R    D ++R F EM    + PD FT  ++++ CA  G L + 
Sbjct: 312 MGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENG 371

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VHN I E K++ +  +S AL+DMY+KCG +  A  VF  +Q  D+  WN MI G + +
Sbjct: 372 KDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKN 431

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
            L  +A  +F +M+ +N  P+SIT   +L AC+    +E G++   H +R+ +S+   + 
Sbjct: 432 SLPNEALNLFVEMQ-YNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVA 490

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +  A+VD+  + G +  A  L+  M  E D+V W  +++ 
Sbjct: 491 N--ALVDMYLKCGALGLAR-LLFDMIPEKDLVSWTVMIAG 527



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 116/217 (53%), Gaps = 2/217 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+DV+SWNSMI G+V N   ++ L  F +ML   +  D  T  SV+ GC+  G L     
Sbjct: 213 DRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRA 272

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H   I+        L+  L+DMYSK G +  A +VF+T+    V  W +MI+G A  GL
Sbjct: 273 LHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGL 332

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           +  +  +F +ME   + PD  T   +L AC+  GL+E G+   ++++    +Q  L    
Sbjct: 333 SDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKEN-KMQSDLFVSN 391

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A++D+  + G + +A+ + + M ++ D+V W  ++  
Sbjct: 392 ALMDMYAKCGSMGDAHSVFSEMQVK-DIVSWNTMIGG 427



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 105/245 (42%), Gaps = 53/245 (21%)

Query: 26  LRFFREMLSSKVEPDK--FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALI 83
           LR   E+++   +PD    T+ SV+  CA L ++     +H++I    +E++ +L + L+
Sbjct: 84  LRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLV 143

Query: 84  DMYSKCG-------------------------------------------------KIQM 94
            MY  CG                                                 +++ 
Sbjct: 144 FMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVES 203

Query: 95  AKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
           A+++FD +   DV  WN+MISG   +GL+     +F +M +  +  D  T + ++  CS+
Sbjct: 204 ARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSN 263

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
            G++  GR    +   + S   +L     ++D+  ++G++  A  +  +M  E  VV W 
Sbjct: 264 TGMLLLGRALHGYA-IKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMG-ERSVVSWT 321

Query: 215 ALLSA 219
           ++++ 
Sbjct: 322 SMIAG 326


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  352 bits (902), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 174/407 (42%), Positives = 254/407 (62%), Gaps = 4/407 (0%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           VSWN+MI G  +N   ++A+R F  M    V+PD FT  SVI   A +     A W+H  
Sbjct: 329 VSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGY 388

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
            I   ++ +  +  ALIDMY+KCG++ +A+ +F++ +   V  WNAMI G   HG    A
Sbjct: 389 SIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAA 448

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186
             +F +M+   ++P+  TFL +L+ACSH GLV+EGR+YF  M+  Y ++P +EHYG MVD
Sbjct: 449 VELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVD 508

Query: 187 LLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---MGGD 243
           LLGRAG ++EA+  I  M M+P + V+ A+L AC+  K +EL E +   I  L    G  
Sbjct: 509 LLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVY 568

Query: 244 YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAI 303
           +VLL+N+Y     W     VR  M+K G++K+ G S ++L   IH F +G  +H +A+ I
Sbjct: 569 HVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEI 628

Query: 304 DKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIRI 363
              L  LI+  K+ G++P T+ +  DV ++ K   L  HSEKLA+A+G+++T+PGT I+I
Sbjct: 629 YSRLAKLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQI 687

Query: 364 SKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            KNLR+C+DCH+  K+IS +  R II+RD  RFH F+ G CSCGDYW
Sbjct: 688 KKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 116/225 (51%), Gaps = 18/225 (8%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP K+ VSWN+MI G+ +N    EAL  F  M+   V+    +  + +  C  LG L+  
Sbjct: 222 MPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEG 281

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH L++   ++ N  +  ALI MYSKC ++ +A  VFD + R     WNAMI G A +
Sbjct: 282 MRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQN 341

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR----YSIQP 176
           G + DA  +FT+M++ NV PDS T + ++ A +            D +++R    YSI+ 
Sbjct: 342 GCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADIS---------DPLQARWIHGYSIRL 392

Query: 177 QLEH----YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
            L+       A++D+  + G +  A  L  S   E  V+ W A++
Sbjct: 393 HLDQDVYVLTALIDMYAKCGRVNIARILFNS-ARERHVITWNAMI 436



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 111/242 (45%), Gaps = 13/242 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE-PDKFTFASVIYGCARLGALNH 59
           MP +D V+WN+++ G+ RN     A+     M   + E PD  T  SV+  CA   AL  
Sbjct: 120 MPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAA 179

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
               H   I   +E    ++ A++D Y KCG I+ A+ VFD +   +   WNAMI G A 
Sbjct: 180 CREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQ 239

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G + +A A+F +M    V    ++ L  L AC   G ++EG +  + +  R  +   + 
Sbjct: 240 NGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHE-LLVRIGLDSNVS 298

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC----------RTFKRLELG 229
              A++ +  +   ++ A  +   +      V W A++  C          R F R++L 
Sbjct: 299 VMNALITMYSKCKRVDLASHVFDELDRRTQ-VSWNAMILGCAQNGCSEDAVRLFTRMQLE 357

Query: 230 EV 231
            V
Sbjct: 358 NV 359



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 117/290 (40%), Gaps = 50/290 (17%)

Query: 25  ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84
           AL  F  M S+   P   TF S++  CA  G L     VH  +  + I+   + + AL +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 85  MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM-EMFNVLPDSI 143
           MY+KC +   A+ VFD +   D   WNA+++G A +GLA  A  +  +M E     PDSI
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 144 TFL-----------------------------------GLLTACSHCGLVEEGRKYFDHM 168
           T +                                    +L A   CG +   R  FD M
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 169 RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME----PDVVVWRALLSACRTFK 224
            ++ S+      + AM+D   + G   EA  L   M  E     DV V  A L AC    
Sbjct: 223 PTKNSVS-----WNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVL-AALQACGELG 276

Query: 225 RLELGEVAIVNISRLMGGDYVLLSN----MYCYLKRWDTAENVREIMKKK 270
            L+ G      + R+     V + N    MY   KR D A +V + + ++
Sbjct: 277 CLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRR 326



 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY- 61
           ++ V++WN+MI G+  +     A+  F EM S  + P++ TF SV+  C+  G ++    
Sbjct: 426 ERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGRE 485

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRND-VSVWNAMISGVAIH 120
           +  ++  +  +E        ++D+  + GK+  A      +  +  +SV+ AM+    +H
Sbjct: 486 YFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLH 545


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  352 bits (902), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 174/407 (42%), Positives = 254/407 (62%), Gaps = 4/407 (0%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           VSWN+MI G  +N   ++A+R F  M    V+PD FT  SVI   A +     A W+H  
Sbjct: 329 VSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGY 388

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
            I   ++ +  +  ALIDMY+KCG++ +A+ +F++ +   V  WNAMI G   HG    A
Sbjct: 389 SIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAA 448

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186
             +F +M+   ++P+  TFL +L+ACSH GLV+EGR+YF  M+  Y ++P +EHYG MVD
Sbjct: 449 VELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVD 508

Query: 187 LLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---MGGD 243
           LLGRAG ++EA+  I  M M+P + V+ A+L AC+  K +EL E +   I  L    G  
Sbjct: 509 LLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVY 568

Query: 244 YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAI 303
           +VLL+N+Y     W     VR  M+K G++K+ G S ++L   IH F +G  +H +A+ I
Sbjct: 569 HVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEI 628

Query: 304 DKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIRI 363
              L  LI+  K+ G++P T+ +  DV ++ K   L  HSEKLA+A+G+++T+PGT I+I
Sbjct: 629 YSRLAKLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQI 687

Query: 364 SKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            KNLR+C+DCH+  K+IS +  R II+RD  RFH F+ G CSCGDYW
Sbjct: 688 KKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 116/225 (51%), Gaps = 18/225 (8%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP K+ VSWN+MI G+ +N    EAL  F  M+   V+    +  + +  C  LG L+  
Sbjct: 222 MPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEG 281

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH L++   ++ N  +  ALI MYSKC ++ +A  VFD + R     WNAMI G A +
Sbjct: 282 MRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQN 341

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR----YSIQP 176
           G + DA  +FT+M++ NV PDS T + ++ A +            D +++R    YSI+ 
Sbjct: 342 GCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADIS---------DPLQARWIHGYSIRL 392

Query: 177 QLEH----YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
            L+       A++D+  + G +  A  L  S   E  V+ W A++
Sbjct: 393 HLDQDVYVLTALIDMYAKCGRVNIARILFNS-ARERHVITWNAMI 436



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 111/242 (45%), Gaps = 13/242 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE-PDKFTFASVIYGCARLGALNH 59
           MP +D V+WN+++ G+ RN     A+     M   + E PD  T  SV+  CA   AL  
Sbjct: 120 MPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAA 179

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
               H   I   +E    ++ A++D Y KCG I+ A+ VFD +   +   WNAMI G A 
Sbjct: 180 CREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQ 239

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G + +A A+F +M    V    ++ L  L AC   G ++EG +  + +  R  +   + 
Sbjct: 240 NGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHE-LLVRIGLDSNVS 298

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC----------RTFKRLELG 229
              A++ +  +   ++ A  +   +      V W A++  C          R F R++L 
Sbjct: 299 VMNALITMYSKCKRVDLASHVFDELDRRTQ-VSWNAMILGCAQNGCSEDAVRLFTRMQLE 357

Query: 230 EV 231
            V
Sbjct: 358 NV 359



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 117/290 (40%), Gaps = 50/290 (17%)

Query: 25  ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84
           AL  F  M S+   P   TF S++  CA  G L     VH  +  + I+   + + AL +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 85  MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM-EMFNVLPDSI 143
           MY+KC +   A+ VFD +   D   WNA+++G A +GLA  A  +  +M E     PDSI
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 144 TFL-----------------------------------GLLTACSHCGLVEEGRKYFDHM 168
           T +                                    +L A   CG +   R  FD M
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 169 RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME----PDVVVWRALLSACRTFK 224
            ++ S+      + AM+D   + G   EA  L   M  E     DV V  A L AC    
Sbjct: 223 PTKNSVS-----WNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVL-AALQACGELG 276

Query: 225 RLELGEVAIVNISRLMGGDYVLLSN----MYCYLKRWDTAENVREIMKKK 270
            L+ G      + R+     V + N    MY   KR D A +V + + ++
Sbjct: 277 CLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRR 326



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY- 61
           ++ V++WN+MI G+  +     A+  F EM S  + P++ TF SV+  C+  G ++    
Sbjct: 426 ERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGRE 485

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRND-VSVWNAMISGVAIH 120
           +  ++  +  +E        ++D+  + GK+  A      +  +  +SV+ AM+    +H
Sbjct: 486 YFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLH 545


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 176/411 (42%), Positives = 258/411 (62%), Gaps = 5/411 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNHAYW 62
           KDV+SWN++I G+ +N    EA+  ++ M   K + P++ T+ S++   A +GAL     
Sbjct: 482 KDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMR 541

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  +I+  + L+  ++  LID+Y KCG++  A  +F  V +     WNA+IS   IHG 
Sbjct: 542 IHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGH 601

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A     +F +M    V PD +TF+ LL+ACSH G VEEG+  F  M+  Y I+P L+HYG
Sbjct: 602 AEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSLKHYG 660

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            MVDLLGRAG++E AYG I  M ++PD  +W ALL ACR    +ELG+ A   +  +   
Sbjct: 661 CMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSK 720

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             G YVLLSN+Y  + +W+  + VR + +++G++K+ G S +E+   +  F  G++SHP+
Sbjct: 721 NVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPK 780

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
            + I + L  L  + KS G++P    VL DV E+EKE  L  HSE+LA+A+GI+ T P +
Sbjct: 781 CKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKS 840

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI KNLR+C DCH+  K ISR+ +R I+VRD  RFH F+ G+CSCGDYW
Sbjct: 841 PIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 118/220 (53%), Gaps = 6/220 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALR-FFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           +P KDV +WNSMI  +V N  F EA+  F++ +L S++ PD +TF  V+  C   G L  
Sbjct: 177 IPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVD 233

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H    +   + N  ++A+LI MYS+ G   +A+ +FD +   D+  WNAMISG+  
Sbjct: 234 GRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQ 293

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G AA A  +  +M +  +  + +T + +L  C   G +        ++  ++ ++  L 
Sbjct: 294 NGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYV-IKHGLEFDLF 352

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A++++  + G++E+A      M +  DVV W ++++A
Sbjct: 353 VSNALINMYAKFGNLEDARKAFQQMFIT-DVVSWNSIIAA 391



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 110/219 (50%), Gaps = 1/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+ SWN+MI G ++N    +AL    EM    ++ +  T  S++  C +LG ++ A
Sbjct: 276 MPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTA 335

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +I+  +E +  +S ALI+MY+K G ++ A++ F  +   DV  WN++I+    +
Sbjct: 336 MLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQN 395

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                A   F KM++    PD +T + L +  +     +  R     +  R  +   +  
Sbjct: 396 DDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVI 455

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A+VD+  + G ++ A+ +   + +  DV+ W  L++ 
Sbjct: 456 GNAVVDMYAKLGLLDSAHKVF-EIILVKDVISWNTLITG 493



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 116/217 (53%), Gaps = 6/217 (2%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           DVVSWNS+I  + +N     A  FF +M  +  +PD  T  S+    A+     ++  VH
Sbjct: 381 DVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVH 440

Query: 65  NLIIEKK-IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
             I+ +  +  + ++  A++DMY+K G +  A +VF+ +   DV  WN +I+G A +GLA
Sbjct: 441 GFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLA 500

Query: 124 ADASAIFTKMEMFN-VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLEHY 181
           ++A  ++  ME    ++P+  T++ +L A +H G +++G +   H R  + ++   +   
Sbjct: 501 SEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRI--HGRVIKTNLHLDVFVA 558

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
             ++D+ G+ G + +A  L   +  E   V W A++S
Sbjct: 559 TCLIDVYGKCGRLVDAMSLFYQVPQESS-VTWNAIIS 594



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P +  V+WN++I     +   ++ L+ F EML   V+PD  TF S++  C+  G +   
Sbjct: 581 VPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEG 640

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE-VFDTVQRNDVSVWNAMISGVAI 119
            W   L+ E  I+ +      ++D+  + G ++MA   + D   + D S+W A++    I
Sbjct: 641 KWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRI 700

Query: 120 HG 121
           HG
Sbjct: 701 HG 702



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 9/156 (5%)

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
           L++  K++  FI S  L+++Y+  G + +++  FD + + DV  WN+MIS    +G   +
Sbjct: 142 LVVAGKVQSIFI-STRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHE 200

Query: 126 ASAIFTKMEMFN-VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLEHYGA 183
           A   F ++ + + + PD  TF  +L A   CG + +GR+   H  + +   Q  +    +
Sbjct: 201 AIGCFYQLLLVSEIRPDFYTFPPVLKA---CGTLVDGRRI--HCWAFKLGFQWNVFVAAS 255

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++ +  R G    A  L   M    D+  W A++S 
Sbjct: 256 LIHMYSRFGFTGIARSLFDDMPFR-DMGSWNAMISG 290


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 178/414 (42%), Positives = 257/414 (62%), Gaps = 5/414 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           +P KDVVSWN++I G+ +N    EA+  +R M   + ++ ++ T+ S++   A +GAL  
Sbjct: 436 IPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQ 495

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  +I+  + L+  +   LID+Y KCG++  A  +F  V R     WNA+IS   I
Sbjct: 496 GMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGI 555

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG    A  +F +M+   V PD +TF+ LL+ACSH GLV+EG K+F H+   Y I+P L+
Sbjct: 556 HGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEG-KWFFHLMQEYGIKPSLK 614

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HYG MVDLLGRAG +E AY  I  M + PD  +W ALL ACR    +ELG+ A   +  +
Sbjct: 615 HYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEV 674

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVLLSN+Y  + +W+  + VR + +++G++K+ G S +E+   +  F  G++S
Sbjct: 675 DSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIFYTGNQS 734

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+ + I   L  L  + KS G++P    VL DV E+EKE  L  HSE+LA+A+GI+ T 
Sbjct: 735 HPKCKEIYAELRILTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTP 794

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           P + IRI KNLR+C DCH+  K ISR+  R I+VRD  RFH F+ G+CSCGDYW
Sbjct: 795 PKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSKRFHHFKNGICSCGDYW 848



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 119/217 (54%), Gaps = 6/217 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALR-FFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           KDV +WNSMI  +VRN  F EA+  F++ +L +K + D +TF  V+  C     L     
Sbjct: 137 KDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQ---TLVDGRK 193

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  + +   + +  ++A+LI MYS+ G + +A+ +FD +   D+  WNAMISG+  +G 
Sbjct: 194 IHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGN 253

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           AA A  +  +M +  +  DS+T   +L  C+  G +        ++  ++ ++ +L    
Sbjct: 254 AAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYV-IKHGLEFELFVSN 312

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A++++  + G++ +A  +   M +  DVV W ++++A
Sbjct: 313 ALINMYAKFGNLGDAQKVFQQMFLR-DVVSWNSIIAA 348



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 112/219 (51%), Gaps = 1/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+ SWN+MI G ++N    +AL    EM    +  D  T AS++  CA+LG ++ A
Sbjct: 233 MPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTA 292

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +I+  +E    +S ALI+MY+K G +  A++VF  +   DV  WN++I+    +
Sbjct: 293 TLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQN 352

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                A   F KM++  + PD +T + L +  +     +  R     +  R  +   +  
Sbjct: 353 DDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVI 412

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++D+  + G I+ A+ +   + ++ DVV W  L+S 
Sbjct: 413 GNAVMDMYAKLGVIDSAHKVFNLIPVK-DVVSWNTLISG 450



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 114/217 (52%), Gaps = 4/217 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +DVVSWNS+I  + +N     A  FF +M  + +EPD  T  S+    A+     ++  V
Sbjct: 337 RDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSV 396

Query: 64  HNLIIEKKIELN-FILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           H  I+ +   +   ++  A++DMY+K G I  A +VF+ +   DV  WN +ISG   +GL
Sbjct: 397 HGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGL 456

Query: 123 AADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
           A++A  ++  ME    +  +  T++ +L A +H G +++G +   H+  + ++   +   
Sbjct: 457 ASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHL-IKTNLHLDVFVG 515

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
             ++DL G+ G + +A  L   +  E   V W A++S
Sbjct: 516 TCLIDLYGKCGRLVDAMCLFYQVPRESS-VPWNAIIS 551



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 46/242 (19%)

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
           L++  KI+ NFI S  L+++Y+  G + +++  FD +QR DV  WN+MIS    +G   +
Sbjct: 99  LVVSGKIQSNFI-SIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFRE 157

Query: 126 ASAIFTKMEMFNVL-PDSITFLGLLTACS--------HCGLVEEGRKY-------FDHMR 169
           A   F ++ +      D  TF  +L AC         HC + + G ++         HM 
Sbjct: 158 AIDCFYQLLLVTKFQADFYTFPPVLKACQTLVDGRKIHCWVFKLGFQWDVFVAASLIHMY 217

Query: 170 SRYSI----------QP--QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP---DVVVWR 214
           SR+             P   +  + AM+  L + G+  +A  ++  M +E    D V   
Sbjct: 218 SRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVA 277

Query: 215 ALLSACRTFKRLELGEVAIVNISRLM----GGDYVL-----LSNMYCYLKRWDTAENVRE 265
           ++L  C      +LG+++   +  L     G ++ L     L NMY        A+ V +
Sbjct: 278 SILPVCA-----QLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQ 332

Query: 266 IM 267
            M
Sbjct: 333 QM 334


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 180/413 (43%), Positives = 240/413 (58%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D +SW++MI G+ +N   +EAL FF EM       ++ +F   +  C+ + AL   
Sbjct: 140 MPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALELG 199

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++   +  + +  AL+ MY KCG I  A++ F  +   DV  WN MI G A H
Sbjct: 200 RQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARH 259

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F  M+   + PD  T + +L ACSH GLV++G +YF  M   Y I  +L H
Sbjct: 260 GFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVH 319

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  MVDLLGRAG +EEA  L+ +M  EPD   W ALL A R     ELGE A   I  + 
Sbjct: 320 YTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIFEME 379

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y+LLS +Y    RW  A  +R  M+ KGV+K  G SWLE+   IH FK GD SH
Sbjct: 380 PHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQNKIHTFKVGDTSH 439

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    I   L  +  + K EG++ +T LV  DV EEEK   L +HSEKLA+AYGIL    
Sbjct: 440 PHTDKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEEEKVHMLKYHSEKLAVAYGILYIPA 499

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH+ IK IS+++ R+II+RD  RFH FEGG CSC D+W
Sbjct: 500 GRPIRVIKNLRVCEDCHNAIKYISKIVGRLIILRDNHRFHYFEGGSCSCRDFW 552



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 109/235 (46%), Gaps = 20/235 (8%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D+VSWN+M+ G+ +N   DEA    RE+       +  ++  ++    + G +  A
Sbjct: 52  MPERDIVSWNAMLSGYAQNGFVDEA----REIFYKMPLKNGISWNGLLAAYVQNGRIEDA 107

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                 + E K++   +    L+      G ++  + +FD + + D   W+AMI+G + +
Sbjct: 108 ----KRLFESKMDWTLVSWNCLMG-----GFVRKRRNLFDNMPQRDSISWSAMIAGYSQN 158

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR-SRYSIQPQLE 179
           G + +A   F +M+      +  +F   L+ CS+   +E GR+   H R  +   Q    
Sbjct: 159 GCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALELGRQL--HCRLVKAGYQTGWY 216

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIV 234
              A++ +  + G I+EA      + +E DVV W  ++     + R   GE A+ 
Sbjct: 217 VGNALLAMYCKCGSIDEARDAFQEI-LEKDVVSWNTMIHG---YARHGFGEEALT 267



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 115/270 (42%), Gaps = 32/270 (11%)

Query: 12  MIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKK 71
           MI G++RN +FD A    R++     E D F++  ++ G  R   L  A      + E+ 
Sbjct: 1   MISGYLRNHKFDLA----RDLFDKMPERDLFSWNVMLTGYVRNRDLKTA----RALFERM 52

Query: 72  IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIF- 130
            E + +   A++  Y++ G +  A+E+F  +   +   WN +++    +G   DA  +F 
Sbjct: 53  PERDIVSWNAMLSGYAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFE 112

Query: 131 TKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGR 190
           +KM+   V  +          C   G V + R  FD+M  R SI      + AM+    +
Sbjct: 113 SKMDWTLVSWN----------CLMGGFVRKRRNLFDNMPQRDSIS-----WSAMIAGYSQ 157

Query: 191 AGHIEEAYGLITSMTMEPDVV---VWRALLSACRTFKRLELGEVAIVNISR--LMGGDYV 245
            G  EEA      M  + + +    +   LS C     LELG      + +     G YV
Sbjct: 158 NGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYV 217

Query: 246 --LLSNMYCYLKRWDTAENV-REIMKKKGV 272
              L  MYC     D A +  +EI++K  V
Sbjct: 218 GNALLAMYCKCGSIDEARDAFQEILEKDVV 247


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 179/416 (43%), Positives = 253/416 (60%), Gaps = 6/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KD+V+W SM+ G+ +NA   +AL+FFR+M  + V  D+ T    I  CA+LG   +A
Sbjct: 201 LPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVSGYA 260

Query: 61  YWVHNLIIEKKIEL--NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
            W+  +    +     N  + +ALIDMYSKCG ++ A  VF  ++  +V  +++MI G A
Sbjct: 261 DWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFA 320

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG A  A  +F +M    + P+ +TF+GL TACSH G+VE+G++ F  M+  Y + P  
Sbjct: 321 VHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVSPTA 380

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           +HY  M DLLGRAGH+E+A  L+ +M MEP+  VW ALL A       ++ E+A  ++  
Sbjct: 381 DHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAEIASRSLFE 440

Query: 239 LMG---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELA-GVIHQFKAGD 294
           L     G+Y+LLS  Y    +WD    VR++M++K +RK+ G SW+E   G+IH+F AGD
Sbjct: 441 LEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEAKNGIIHEFFAGD 500

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
             HPE   I K L  L+QR K  G+ P    V  D+ +E K   L  HSEKLALAYG+L 
Sbjct: 501 VKHPEINEIKKALDDLLQRLKCTGYQPKLNSVPYDIDDEGKRCLLVSHSEKLALAYGLLS 560

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T  G+ I+I KNLRIC DCH  +   S+L  R IIVRD +RFH F  G CSC ++W
Sbjct: 561 TDAGSTIKIMKNLRICEDCHIVMCGASKLTGRKIIVRDNMRFHHFLNGACSCNNFW 616



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 104/229 (45%), Gaps = 37/229 (16%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASV--IYGCARLGALNHAY----- 61
           ++++I  + RN  F  ++R +  ML++ V P  FTF+++  +     LG+  H +     
Sbjct: 80  YSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLLKNPSLGSQLHLHAFLFG 139

Query: 62  -----WVHNLIIEKKIELNFILSA----------------ALIDMYSKCGKIQMAKEVFD 100
                +V N II   ++   +  A                 LI  Y++ G +  A E+F 
Sbjct: 140 FVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACELFV 199

Query: 101 TVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE 160
            +   D+  W +M++G + + +   A   F KM    V+ D IT +G ++AC+  G+   
Sbjct: 200 GLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGV--- 256

Query: 161 GRKYFDHMR-----SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
              Y D +R     SR+     +    A++D+  + G++EEAY +   M
Sbjct: 257 -SGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGM 304


>gi|242045040|ref|XP_002460391.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
 gi|241923768|gb|EER96912.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
          Length = 573

 Score =  351 bits (901), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 182/392 (46%), Positives = 252/392 (64%), Gaps = 6/392 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           MP +D VSWN+++   V N  +DEA+  FREML+S+  +PD+ T  SV+   A LGAL  
Sbjct: 172 MPSRDSVSWNTVLSLCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAQ 231

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             W H  +I K +E+   LS+ALI+MYSKCG ++ A  VFD V+ +  +  WNAM++G  
Sbjct: 232 GLWAHAYVIRKGVEVEEKLSSALINMYSKCGFLEGAVYVFDNVRGKRSLDTWNAMLAGFT 291

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            +G +  A A+FT+ME   ++P+ ITF  +L ACSH GLVEEG + F  M   Y I+P +
Sbjct: 292 ANGCSGRALALFTRMETTGLMPNKITFNCILNACSHGGLVEEGMRCFQRMSRVYGIEPDI 351

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
            HYG MVDL  RAG  E+A  +I  M MEPD  + +ALL ACRT K LELG+ A   +  
Sbjct: 352 AHYGCMVDLFCRAGMFEKAEEIIQIMPMEPDASMLKALLGACRTHKNLELGKKAGHRLIE 411

Query: 239 LMGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
               D   YVLLSN+Y     W     VR++M  +GV K+ G S +EL GVIH+F +GD+
Sbjct: 412 AAPNDHAGYVLLSNIYALDGNWGRVHKVRKLMLDRGVLKTPGSSSVELNGVIHEFISGDK 471

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEE-KEGNLYHHSEKLALAYGILK 354
           SH   + I K+L  + Q+ KS G+ P T  VL+D+ +E+ KE +L  HSEKLA+A+G++ 
Sbjct: 472 SHSRKRDIYKMLDEICQQLKSAGYTPDTSQVLLDIDDEDVKESSLAVHSEKLAIAFGLIS 531

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRR 386
           T+PGT IR+  NLRIC DCH+ IK++S++  R
Sbjct: 532 TAPGTPIRVVNNLRICGDCHNAIKLLSKIYGR 563



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 88/416 (21%), Positives = 151/416 (36%), Gaps = 104/416 (25%)

Query: 25  ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILS----- 79
           ALR F  +L S  +PD   +   +  CAR      A  +H    ++     F+ S     
Sbjct: 62  ALRLFDHLLRSGADPDPAAYELALASCARGKDRATAAQLHAHAAKR----GFLASHRRVR 117

Query: 80  AALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD-------------- 125
             L+  Y+ CG +  A+ VFD    ND+  WN ++ G A  G  AD              
Sbjct: 118 CRLVHAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDADLLRDFFARMPSRDS 177

Query: 126 ------------------ASAIFTKM-EMFNVLPDSITFLGLLTACSH------------ 154
                             A A+F +M       PD +T + +++A ++            
Sbjct: 178 VSWNTVLSLCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAQGLWAHA 237

Query: 155 -----------------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRA 191
                                  CG +E     FD++R + S    L+ + AM+      
Sbjct: 238 YVIRKGVEVEEKLSSALINMYSKCGFLEGAVYVFDNVRGKRS----LDTWNAMLAGFTAN 293

Query: 192 GHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG-----GD 243
           G    A  L T M    + P+ + +  +L+AC     +E G      +SR+ G       
Sbjct: 294 GCSGRALALFTRMETTGLMPNKITFNCILNACSHGGLVEEGMRCFQRMSRVYGIEPDIAH 353

Query: 244 YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAI 303
           Y  + +++C    ++ AE + +IM  +             A ++       R+H   +  
Sbjct: 354 YGCMVDLFCRAGMFEKAEEIIQIMPME-----------PDASMLKALLGACRTHKNLELG 402

Query: 304 DKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
            K    LI+   ++    A  ++L ++   +      H   KL L  G+LKT PG+
Sbjct: 403 KKAGHRLIEAAPNDH---AGYVLLSNIYALDGNWGRVHKVRKLMLDRGVLKT-PGS 454


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  351 bits (901), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 177/413 (42%), Positives = 245/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++++++W  MI G  +N   +E+L+ F  M S   EP  + FA  I  CA L AL H 
Sbjct: 387 MPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHG 446

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  ++    + +     ALI MY+KCG ++ A  +F T+   D   WNAMI+ +  H
Sbjct: 447 RQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQH 506

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  A A  +F  M   ++LPD ITFL +L+ CSH GLVEEG +YF  M   Y I P  +H
Sbjct: 507 GHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDH 566

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  M+DLL RAG   EA  +I +M +EP   +W ALL+ CR    ++LG  A   +  LM
Sbjct: 567 YARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELM 626

Query: 241 ---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSNMY  + RWD    VR++M+ KGV+K  G SW+E+   +H F   D  H
Sbjct: 627 PQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDDIVH 686

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE QA+   L  L  + +  G++P T+ VL D+  E+KE  L  HSEKLA+ +G+LK   
Sbjct: 687 PEVQAVYNYLEELGLKMRKLGYIPDTKFVLHDMESEQKEYVLSTHSEKLAVGFGLLKLPL 746

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  +R+ KNLRIC DCH+  K +S+++ R I+VRD  RFH F+ G CSCG+YW
Sbjct: 747 GATVRVFKNLRICGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGECSCGNYW 799



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 119/254 (46%), Gaps = 37/254 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +K VV+WN+MI G+V +  F EAL  FR+M    ++ D+FT+ SV+  CA  G   H 
Sbjct: 251 MTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHG 310

Query: 61  YWVHNLII--EKKIELNFILSA--ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA---- 112
             VH  I+  E +  L+F LS   AL  +Y KCGK+  A++VF+ +   D+  WNA    
Sbjct: 311 KQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSG 370

Query: 113 ---------------------------MISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145
                                      MISG+A +G   ++  +F +M+     P    F
Sbjct: 371 YVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAF 430

Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
            G + AC+    +  GR+    +  R      L    A++ +  + G +E A+ L  +M 
Sbjct: 431 AGAIIACAWLAALMHGRQLHAQL-VRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMP 489

Query: 206 MEPDVVVWRALLSA 219
              D V W A+++A
Sbjct: 490 Y-LDSVSWNAMIAA 502



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 112/274 (40%), Gaps = 57/274 (20%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGAL------ 57
           +D V +N+MI G+  N     A+  FR++L +   PD FTF SV      LGAL      
Sbjct: 112 RDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSV------LGALALIVED 165

Query: 58  -NHAYWVHNLIIEKKIELNFILSAALIDMYSKC--------------------------- 89
                 +H  +++        +  AL+ ++ KC                           
Sbjct: 166 EKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDE 225

Query: 90  -------------GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMF 136
                        G++  A++  D +    V  WNAMISG   HG   +A  +F KM + 
Sbjct: 226 LSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLL 285

Query: 137 NVLPDSITFLGLLTACSHCGLVEEGRK---YFDHMRSRYSIQPQLEHYGAMVDLLGRAGH 193
            +  D  T+  +L+AC++ G    G++   Y      R S+   L    A+  L  + G 
Sbjct: 286 GIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGK 345

Query: 194 IEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
           ++EA  +   M ++ D+V W A+LS      R++
Sbjct: 346 VDEARQVFNQMPVK-DLVSWNAILSGYVNAGRID 378


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  351 bits (901), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 176/413 (42%), Positives = 258/413 (62%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + D++ VSWN++I  +V+    + AL  F  ML  +V+  + T++S++  CA L AL   
Sbjct: 309 LSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELG 368

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH L  +     +  +  ALIDMY+KCG I+ A+ +FD +   D   WNA+I G ++H
Sbjct: 369 LQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMH 428

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  +F  M+     PD +TF+G+L+ACS+ G ++EG++YF  M+  Y I+P +EH
Sbjct: 429 GLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEH 488

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MV L+GR+G++++A   I  +  EP V++WRALL AC     +ELG ++   +  L 
Sbjct: 489 YTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELE 548

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D   +VLLSN+Y   +RW     VR+ MK+KGV+K  G SW+E  G +H F   D SH
Sbjct: 549 PRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSH 608

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            + + I+ +L  L  +T+  G+ P    VL+DV ++EKE  L+ HSE+LALA+G+++   
Sbjct: 609 ADLKLINGMLEFLNMKTRKAGYSPQLNAVLLDVEDDEKERLLWLHSERLALAFGLVRMPA 668

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KNLRIC DCHS IK+IS+++ R IIVRD  RFH FE G CSC DYW
Sbjct: 669 GCPIRIIKNLRICVDCHSVIKLISKIVGRDIIVRDMNRFHHFENGSCSCADYW 721



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 126/293 (43%), Gaps = 47/293 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  KD+VSW  MI  +  N  F EAL FF +M  +  +P+ FTFA V+  C  L   +  
Sbjct: 107 ISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAG 166

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +++   E +  +   L+++Y++CG    A   F  + +NDV  W+ MIS  A  
Sbjct: 167 KTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQS 226

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTAC---------------------------- 152
           G +  A  IF +M    V+P+  TF  +L A                             
Sbjct: 227 GQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVS 286

Query: 153 -------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM- 204
                  + CG +E+  + F+ +  R  +      +  ++    + G  E A  L ++M 
Sbjct: 287 NALMACYAKCGCIEQSMELFEALSDRNDVS-----WNTIIVSYVQLGDGERALSLFSNML 341

Query: 205 --TMEPDVVVWRALLSACRTFKRLELG-EVAIVNISRLMGGDYVL---LSNMY 251
              ++   V + ++L AC T   LELG +V  +    + G D  +   L +MY
Sbjct: 342 RYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMY 394



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 118/219 (53%), Gaps = 6/219 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP  DV+ W+ MI  F ++ + ++AL  F +M  + V P++FTF+SV+   A + +L+ +
Sbjct: 208 MPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLS 267

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
             +H   ++  +  +  +S AL+  Y+KCG I+ + E+F+ +  RNDVS WN +I     
Sbjct: 268 KTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVS-WNTIIVSYVQ 326

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            G    A ++F+ M  + V    +T+  +L AC+    +E G +   H  +  +I  Q  
Sbjct: 327 LGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQV--HCLTAKTIYGQDV 384

Query: 180 HYG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             G A++D+  + G I++A  +   + +  D V W A++
Sbjct: 385 AVGNALIDMYAKCGSIKDARFMFDMLDLR-DKVSWNAII 422



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 107/219 (48%), Gaps = 4/219 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++ VS+ ++I G+ ++ +F EA   F  +     E + F F +V+     +      
Sbjct: 6   MPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEWAELG 65

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +++     N  +  ALID YS  G + MA+EVFD +   D+  W  MI+  A +
Sbjct: 66  RIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAEN 125

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLE 179
              ++A   F++M +    P++ TF G+L AC      + G+  +   +++ Y  +  L 
Sbjct: 126 DCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNY--ERDLY 183

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
               +++L  R G  ++A+     M  + DV+ W  ++S
Sbjct: 184 VGVGLLELYTRCGDNDDAWRAFGDMP-KNDVIPWSFMIS 221


>gi|218185168|gb|EEC67595.1| hypothetical protein OsI_34962 [Oryza sativa Indica Group]
          Length = 838

 Score =  351 bits (900), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 163/420 (38%), Positives = 259/420 (61%), Gaps = 12/420 (2%)

Query: 3   DKDVVSWNSMIGGFVR---------NARFDEALRFFREMLSSKVEPDKFTFASVIYGCAR 53
           + D+ +WN+++  + R         ++  D  L  F  MLS  ++P++ T  +VI  C  
Sbjct: 419 NPDLPAWNALLSAYARLRARDVACASSAADAILEMFVRMLSLAIKPNEITLVAVIGACGE 478

Query: 54  LGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAM 113
           LGA++H  W H   +++++ +N I++ AL++MY+ CG++ +A++VF      D   +NAM
Sbjct: 479 LGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAM 538

Query: 114 ISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
           + G+A+HG    A ++F +M    V  D +T L ++ AC+H GLV+EG  YFD M   + 
Sbjct: 539 LHGLAVHGHGRAALSLFDRMHGEGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFG 598

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI 233
           I+P +EHYG MVD+L RAG + +A  LI  M + P+  ++R+L+ AC    +LELG+  I
Sbjct: 599 IEPSIEHYGCMVDMLSRAGRLNDAEKLIHGMPIVPNAAIYRSLIRACGIHGKLELGKKMI 658

Query: 234 VNISRLM---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQF 290
             + RL     G++VL+SN Y    RWD A+  R+ MK  G+ KS G S++++ GV+H+F
Sbjct: 659 AELMRLEPDDSGNHVLISNFYATTNRWDDAKKARKEMKSMGIDKSPGSSFVDINGVLHEF 718

Query: 291 KAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAY 350
             GD++HP ++ I  ++  +  R    G   +T   L DV EE+K   L +HSE+LA+A+
Sbjct: 719 LVGDKTHPASKEIYAMVEDIETRLSECGHRSSTSSALFDVEEEDKADALSYHSERLAIAF 778

Query: 351 GILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            ++ ++PG  IRI KNLR+C DCH   K++SR+  R I++RDR RFH F  G+CSCGD+W
Sbjct: 779 ALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 838



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 9/104 (8%)

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG--------VA 118
           I+  +   + +L AAL+D++++CG+I   ++VFD +   D+  WNA++S         VA
Sbjct: 382 ILNNETSCDRVLGAALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVA 441

Query: 119 IHGLAADAS-AIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG 161
               AADA   +F +M    + P+ IT + ++ AC   G V  G
Sbjct: 442 CASSAADAILEMFVRMLSLAIKPNEITLVAVIGACGELGAVSHG 485


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  351 bits (900), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 179/413 (43%), Positives = 245/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D +SW ++I G+ ++   +EAL  F EM       ++ TF S +  CA + AL   
Sbjct: 354 MPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELG 413

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +++  +E    +  AL+ MY KCG I  A  VF+ ++  +V  WN MI+G A H
Sbjct: 414 KQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARH 473

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F  M+   +LPD +T +G+L+ACSH GLV++G +YF  M   Y I    +H
Sbjct: 474 GFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKH 533

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  M+DLLGRAG +++A  L+ +M  EPD   W ALL A R     ELGE A   I  + 
Sbjct: 534 YTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEME 593

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    RW     +R  M+ +GV+K  G SW+E+   IH F  GD  H
Sbjct: 594 PDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVH 653

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE   I   L  L  + K EG++ +T+LVL DV EEEK   L +HSEKLA+A+GIL    
Sbjct: 654 PERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPA 713

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH+ +K IS+++ R+II+RD  RFH F GG CSCGDYW
Sbjct: 714 GRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGDYW 766



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 12/169 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D VSWN+MI G+ +N    EA R F E   S V  D FT+ +++ G  + G L+ A
Sbjct: 230 MPERDEVSWNTMISGYAQNGELLEAQRLFEE---SPVR-DVFTWTAMVSGYVQNGMLDEA 285

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V + + EK    N +   A+I  Y +C ++  A+E+F+ +   +VS WN MI+G A +
Sbjct: 286 RRVFDGMPEK----NSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQN 341

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169
           G  A A   F +M       DSI++  ++   +  G  EE    F  M+
Sbjct: 342 GDIAQARNFFDRMPQ----RDSISWAAIIAGYAQSGYGEEALHLFVEMK 386



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 138/329 (41%), Gaps = 62/329 (18%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM----------------LSSKVEPDKFTF 44
           MP++DVVSWN+M+ G+ +N    EA   F EM                 + ++E  +  F
Sbjct: 137 MPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLF 196

Query: 45  AS------VIYGCARLGALNHAYWVHNL-IIEKKIELNFILSAALIDMYSKCGKIQMAKE 97
            S      + + C   G +     V    I ++  E + +    +I  Y++ G++  A+ 
Sbjct: 197 ESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQR 256

Query: 98  VFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM------------------------ 133
           +F+     DV  W AM+SG   +G+  +A  +F  M                        
Sbjct: 257 LFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQA 316

Query: 134 -EMFNVLP--DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGR 190
            E+F  +P  +  ++  ++T  +  G + + R +FD M  R SI      + A++    +
Sbjct: 317 RELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSIS-----WAAIIAGYAQ 371

Query: 191 AGHIEEAYGLITSMTMEPDVV---VWRALLSACRTFKRLELGEVAIVNISR--LMGGDYV 245
           +G+ EEA  L   M  + + +    + + LS C     LELG+     + +  L  G YV
Sbjct: 372 SGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYV 431

Query: 246 --LLSNMYCYLKRWDTAENVREIMKKKGV 272
              L  MYC     D A  V E +++K V
Sbjct: 432 GNALLVMYCKCGNIDDAYIVFEGIEEKEV 460



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 98/217 (45%), Gaps = 18/217 (8%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D D+V WN  I   +RN + D ALR F  M          ++ ++I GC      N  ++
Sbjct: 46  DADIVKWNIAITNHMRNGQCDSALRLFNSM----PRRSSISWNAMISGCLS----NDKFY 97

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +   + EK    + +    +I    +   ++ A+ +FD +   DV  WNAM+SG A +G 
Sbjct: 98  LARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGY 157

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  IF +M   N    SI++ G+L A    G +E+ R+ F+          +L  + 
Sbjct: 158 VKEAKEIFDEMPCKN----SISWNGMLAAYVQNGRIEDARRLFES-----KADWELISWN 208

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            M+    +   + +A G+   M  E D V W  ++S 
Sbjct: 209 CMMGGYVKRNRLVDARGIFDRMP-ERDEVSWNTMISG 244



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 98/219 (44%), Gaps = 18/219 (8%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +  +SWN+MI G + N +F  A + F +M +     D  ++  +I GC R   L  A
Sbjct: 75  MPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTR----DLVSWNVMISGCVRYRNLRAA 130

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                L+ ++  E + +   A++  Y++ G ++ AKE+FD +   +   WN M++    +
Sbjct: 131 ----RLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQN 186

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA  +F     + +    I++  ++        + + R  FD M  R  +      
Sbjct: 187 GRIEDARRLFESKADWEL----ISWNCMMGGYVKRNRLVDARGIFDRMPERDEVS----- 237

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +  M+    + G + EA  L     +  DV  W A++S 
Sbjct: 238 WNTMISGYAQNGELLEAQRLFEESPVR-DVFTWTAMVSG 275



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 107/228 (46%), Gaps = 20/228 (8%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+VSWN MI G VR      A   F +M     E D  ++ +++ G A+ G +  A
Sbjct: 106 MPTRDLVSWNVMISGCVRYRNLRAARLLFDQM----PERDVVSWNAMLSGYAQNGYVKEA 161

Query: 61  YWVHN-LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             + + +  +  I  N +L+A     Y + G+I+ A+ +F++    ++  WN M+ G   
Sbjct: 162 KEIFDEMPCKNSISWNGMLAA-----YVQNGRIEDARRLFESKADWELISWNCMMGGYVK 216

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
                DA  IF +M       D +++  +++  +  G + E ++ F+    R      + 
Sbjct: 217 RNRLVDARGIFDRMPE----RDEVSWNTMISGYAQNGELLEAQRLFEESPVR-----DVF 267

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
            + AMV    + G ++EA  +   M  E + V W A+++     KR++
Sbjct: 268 TWTAMVSGYVQNGMLDEARRVFDGMP-EKNSVSWNAIIAGYVQCKRMD 314


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  351 bits (900), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 181/413 (43%), Positives = 242/413 (58%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD VSW +M+  + +    +E L+ F EM       ++  FA V+  CA + AL   
Sbjct: 343 MPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECG 402

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +I     +   +  AL+ MY KCG ++ A+  F+ ++  DV  WN MI+G A H
Sbjct: 403 MQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARH 462

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  IF  M   +  PD IT +G+L ACSH GLVE+G  YF  M   + +  + EH
Sbjct: 463 GFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEH 522

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  M+DLLGRAG + EA+ L+  M  EPD  +W ALL A R  +  ELG  A   I  L 
Sbjct: 523 YTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELE 582

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    +W  A  +R +M+++GV+K  G SW+E+   +H F AGD  H
Sbjct: 583 PENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVH 642

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE + I   L  L  R K  G++ AT++VL DV EEEKE  L +HSEKLA+AYGIL   P
Sbjct: 643 PEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPP 702

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH+  K IS +  R+I++RD  RFH F GG CSCGDYW
Sbjct: 703 GRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 104/244 (42%), Gaps = 70/244 (28%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P+KD VSWN M+  +VRN R +EA    R + +S+ E D  ++ +++ G           
Sbjct: 158 PEKDAVSWNGMLAAYVRNGRVEEA----RGLFNSRTEWDAISWNALMSG----------- 202

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
                                   Y + GK+  A+E+FD +   DV  WN M+SG A  G
Sbjct: 203 ------------------------YVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRG 238

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR---------- 171
              +A  +F    + +V     T+  +++  +  G++EE R+ FD M  R          
Sbjct: 239 DMVEARRLFDAAPVRDVF----TWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVA 294

Query: 172 --------------YSIQP--QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRA 215
                         +++ P   +  +  M+    +AG +EEA  +  +M  + D V W A
Sbjct: 295 AYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP-QKDAVSWAA 353

Query: 216 LLSA 219
           +L+A
Sbjct: 354 MLAA 357



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 118/265 (44%), Gaps = 46/265 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVVSWN M+ G+ R     EA R F     +    D FT+ +V+ G A+ G L  A
Sbjct: 219 MPGRDVVSWNIMVSGYARRGDMVEARRLF----DAAPVRDVFTWTAVVSGYAQNGMLEEA 274

Query: 61  YWVHNLIIEKK-IELNFILSA--------------------------ALIDMYSKCGKIQ 93
             V + + E+  +  N +++A                           ++  Y++ G ++
Sbjct: 275 RRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLE 334

Query: 94  MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
            AK VFDT+ + D   W AM++  +  G + +   +F +M       +   F  +L+ C+
Sbjct: 335 EAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCA 394

Query: 154 -----HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
                 CG+   GR     +R+ Y +   + +  A++ +  + G++E+A      M  E 
Sbjct: 395 DIAALECGMQLHGRL----IRAGYGVGCFVGN--ALLAMYFKCGNMEDARNAFEEME-ER 447

Query: 209 DVVVWRALLSACRTFKRLELGEVAI 233
           DVV W  +++    + R   G+ A+
Sbjct: 448 DVVSWNTMIAG---YARHGFGKEAL 469



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 128/310 (41%), Gaps = 31/310 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +   ++N+M+ G+  N R   A   FR +      PD +++ ++++  A   +L  A
Sbjct: 64  MPRRSTSTYNAMLAGYSANGRLPLAASLFRAI----PRPDNYSYNTLLHALAVSSSLADA 119

Query: 61  YWVHN-LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             + + + +   +  N ++S+     ++  G + +A+  FD     D   WN M++    
Sbjct: 120 RGLFDEMPVRDSVTYNVMISS-----HANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVR 174

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G   +A  +F     +    D+I++  L++     G + E R+ FD M  R  +     
Sbjct: 175 NGRVEEARGLFNSRTEW----DAISWNALMSGYVQWGKMSEARELFDRMPGRDVVS---- 226

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
            +  MV    R G + EA  L  +  +  DV  W A++S       LE        +   
Sbjct: 227 -WNIMVSGYARRGDMVEARRLFDAAPVR-DVFTWTAVVSGYAQNGMLEEARRVFDAMPER 284

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLEL------AGVIHQFKAG 293
               +  +   Y   +  D A+ +  +M  + V      SW  +      AG++ + KA 
Sbjct: 285 NAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNV-----ASWNTMLTGYAQAGMLEEAKAV 339

Query: 294 DRSHPEAQAI 303
             + P+  A+
Sbjct: 340 FDTMPQKDAV 349



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 39/223 (17%)

Query: 71  KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIF 130
           ++E   I S   I  + + G++  A+ +F  + R   S +NAM++G + +G    A+++F
Sbjct: 33  RLEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLF 92

Query: 131 TKME-------------------------MFNVLP--DSITFLGLLTACSHCGLVEEGRK 163
             +                          +F+ +P  DS+T+  ++++ ++ GLV   R 
Sbjct: 93  RAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARH 152

Query: 164 YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTF 223
           YFD    + ++      +  M+    R G +EEA GL  S T E D + W AL+S    +
Sbjct: 153 YFDLAPEKDAVS-----WNGMLAAYVRNGRVEEARGLFNSRT-EWDAISWNALMSGYVQW 206

Query: 224 KRL-ELGEVAIVNISRLMGGDYVLLSNMYC-YLKRWDTAENVR 264
            ++ E  E+      R+ G D V  + M   Y +R D  E  R
Sbjct: 207 GKMSEAREL----FDRMPGRDVVSWNIMVSGYARRGDMVEARR 245


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  351 bits (900), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 181/413 (43%), Positives = 242/413 (58%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD VSW +M+  + +    +E L+ F EM       ++  FA V+  CA + AL   
Sbjct: 343 MPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECG 402

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +I     +   +  AL+ MY KCG ++ A+  F+ ++  DV  WN MI+G A H
Sbjct: 403 MQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARH 462

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  IF  M   +  PD IT +G+L ACSH GLVE+G  YF  M   + +  + EH
Sbjct: 463 GFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEH 522

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  M+DLLGRAG + EA+ L+  M  EPD  +W ALL A R  +  ELG  A   I  L 
Sbjct: 523 YTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELE 582

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    +W  A  +R +M+++GV+K  G SW+E+   +H F AGD  H
Sbjct: 583 PENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVH 642

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE + I   L  L  R K  G++ AT++VL DV EEEKE  L +HSEKLA+AYGIL   P
Sbjct: 643 PEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPP 702

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH+  K IS +  R+I++RD  RFH F GG CSCGDYW
Sbjct: 703 GRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 104/244 (42%), Gaps = 70/244 (28%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P+KD VSWN M+  +VRN R +EA    R + +S+ E D  ++ +++ G           
Sbjct: 158 PEKDAVSWNGMLAAYVRNGRVEEA----RGLFNSRTEWDVISWNALMSG----------- 202

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
                                   Y + GK+  A+E+FD +   DV  WN M+SG A  G
Sbjct: 203 ------------------------YVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRG 238

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR---------- 171
              +A  +F    + +V     T+  +++  +  G++EE R+ FD M  R          
Sbjct: 239 DMVEARRLFDAAPVRDVF----TWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVA 294

Query: 172 --------------YSIQP--QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRA 215
                         +++ P   +  +  M+    +AG +EEA  +  +M  + D V W A
Sbjct: 295 AYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP-QKDAVSWAA 353

Query: 216 LLSA 219
           +L+A
Sbjct: 354 MLAA 357



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 118/265 (44%), Gaps = 46/265 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVVSWN M+ G+ R     EA R F     +    D FT+ +V+ G A+ G L  A
Sbjct: 219 MPGRDVVSWNIMVSGYARRGDMVEARRLF----DAAPVRDVFTWTAVVSGYAQNGMLEEA 274

Query: 61  YWVHNLIIEKK-IELNFILSA--------------------------ALIDMYSKCGKIQ 93
             V + + E+  +  N +++A                           ++  Y++ G ++
Sbjct: 275 RRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLE 334

Query: 94  MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
            AK VFDT+ + D   W AM++  +  G + +   +F +M       +   F  +L+ C+
Sbjct: 335 EAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCA 394

Query: 154 -----HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
                 CG+   GR     +R+ Y +   + +  A++ +  + G++E+A      M  E 
Sbjct: 395 DIAALECGMQLHGRL----IRAGYGVGCFVGN--ALLAMYFKCGNMEDARNAFEEME-ER 447

Query: 209 DVVVWRALLSACRTFKRLELGEVAI 233
           DVV W  +++    + R   G+ A+
Sbjct: 448 DVVSWNTMIAG---YARHGFGKEAL 469



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 128/310 (41%), Gaps = 31/310 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +   ++N+M+ G+  N R   A   FR +      PD +++ ++++  A   +L  A
Sbjct: 64  MPRRSTSTYNAMLAGYSANGRLPLAASLFRAI----PRPDNYSYNTLLHALAVSSSLADA 119

Query: 61  YWVHN-LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             + + + +   +  N ++S+     ++  G + +A+  FD     D   WN M++    
Sbjct: 120 RGLFDEMPVRDSVTYNVMISS-----HANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVR 174

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G   +A  +F     ++V    I++  L++     G + E R+ FD M  R  +     
Sbjct: 175 NGRVEEARGLFNSRTEWDV----ISWNALMSGYVQWGKMSEARELFDRMPGRDVVS---- 226

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
            +  MV    R G + EA  L  +  +  DV  W A++S       LE        +   
Sbjct: 227 -WNIMVSGYARRGDMVEARRLFDAAPVR-DVFTWTAVVSGYAQNGMLEEARRVFDAMPER 284

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLEL------AGVIHQFKAG 293
               +  +   Y   +  D A+ +  +M  + V      SW  +      AG++ + KA 
Sbjct: 285 NAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNV-----ASWNTMLTGYAQAGMLEEAKAV 339

Query: 294 DRSHPEAQAI 303
             + P+  A+
Sbjct: 340 FDTMPQKDAV 349



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 39/223 (17%)

Query: 71  KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIF 130
           ++E   I S   I  + + G++  A+ +F  + R   S +NAM++G + +G    A+++F
Sbjct: 33  RLEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLF 92

Query: 131 TKME-------------------------MFNVLP--DSITFLGLLTACSHCGLVEEGRK 163
             +                          +F+ +P  DS+T+  ++++ ++ GLV   R 
Sbjct: 93  RAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARH 152

Query: 164 YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTF 223
           YFD    + ++      +  M+    R G +EEA GL  S T E DV+ W AL+S    +
Sbjct: 153 YFDLAPEKDAVS-----WNGMLAAYVRNGRVEEARGLFNSRT-EWDVISWNALMSGYVQW 206

Query: 224 KRL-ELGEVAIVNISRLMGGDYVLLSNMYC-YLKRWDTAENVR 264
            ++ E  E+      R+ G D V  + M   Y +R D  E  R
Sbjct: 207 GKMSEAREL----FDRMPGRDVVSWNIMVSGYARRGDMVEARR 245


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  351 bits (900), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 177/417 (42%), Positives = 255/417 (61%), Gaps = 7/417 (1%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            M  ++   WNS++ G+       E+   F EML S +E D  T  +++  C+ L AL H 
Sbjct: 672  MEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHG 731

Query: 61   YWVHNLIIEKK-IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H+LII+K  +  + +L  AL+DMYSKCG I  A+ VFD +   ++  WNAMISG + 
Sbjct: 732  DQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSK 791

Query: 120  HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            HG + +A  ++ +M    + P+ +TFL +L+ACSH GLVEEG + F  M+  Y+I+ + E
Sbjct: 792  HGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAE 851

Query: 180  HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
            HY  MVDLLGRAG +E+A   +  M +EP+V  W ALL ACR  K +++G +A   +  L
Sbjct: 852  HYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFEL 911

Query: 240  ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                 G YV++SN+Y    RW   E++R++MK KGV+K  G SW+E+   I  F AG ++
Sbjct: 912  DPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKT 971

Query: 297  HPEAQAIDKILGSLIQRTKSEGFLPATELVLM---DVSEEEKEGNLYHHSEKLALAYGIL 353
            HP+ + I   L  L  ++K  G++P T  +L    D+ EEE+E  L  HSE+LAL+ G++
Sbjct: 972  HPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLI 1031

Query: 354  KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
                 + IR+ KNLRIC DCH+  K IS++  R II RD  RFH FE G CSCGDYW
Sbjct: 1032 SLPKKSTIRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 1088



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 122/222 (54%), Gaps = 11/222 (4%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNHAY 61
           +++ VS+N+++ G+V+  + +EAL  + +M S   ++PD+FTF +++  CA     N   
Sbjct: 440 ERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGR 499

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H  +I   I  N I+   L+ MYS+CG++  AKE+F+ +   +   WN+MI G   +G
Sbjct: 500 QIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNG 559

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              +A  +F +M++  + PD  +   +L++C      ++GR+  +     + ++  +E  
Sbjct: 560 ETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHN-----FIVRNTMEEE 614

Query: 182 G----AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           G     +VD+  + G ++ A+  +   T++ DV++   ++SA
Sbjct: 615 GILQVVLVDMYAKCGSMDYAWK-VYDQTIKKDVILNNVMVSA 655



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 116/250 (46%), Gaps = 32/250 (12%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++  SWNSMI G+ +N    EALR F++M  + ++PD F+ +S++  C  L      
Sbjct: 540 MAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKG 599

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +HN I+   +E   IL   L+DMY+KCG +  A +V+D   + DV + N M+S     
Sbjct: 600 RELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNS 659

Query: 121 GLAADASAIFTKMEMFN-------------------------------VLPDSITFLGLL 149
           G A DA  +F +ME  N                               +  D +T + ++
Sbjct: 660 GRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIV 719

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
             CS    +E G +    +  +  +   +    A+VD+  + G I +A  +  +M  + +
Sbjct: 720 NLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGK-N 778

Query: 210 VVVWRALLSA 219
           +V W A++S 
Sbjct: 779 IVSWNAMISG 788



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 141/316 (44%), Gaps = 50/316 (15%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++ V+WNS+I    +   F++AL  F  M  S  + ++F   S++   A L  +   
Sbjct: 337 MGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKG 396

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT-VQRNDVSVWNAMISGVAI 119
             +H  ++   +  + IL +AL+DMYSKCG ++ A +VF + ++RN+VS +NA+++G   
Sbjct: 397 RELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVS-YNALLAGYVQ 455

Query: 120 HGLAADASAIFTKMEMFN-VLPDSITFLGLLTAC-------------------------- 152
            G A +A  ++  M+  + + PD  TF  LLT C                          
Sbjct: 456 EGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNII 515

Query: 153 ---------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
                    S CG +   ++ F+ M  R +       + +M++   + G  +EA  L   
Sbjct: 516 VETELVHMYSECGRLNYAKEIFNRMAERNAYS-----WNSMIEGYQQNGETQEALRLFKQ 570

Query: 204 MTM---EPDVVVWRALLSACRTF----KRLELGEVAIVNISRLMGGDYVLLSNMYCYLKR 256
           M +   +PD     ++LS+C +     K  EL    + N     G   V+L +MY     
Sbjct: 571 MQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGS 630

Query: 257 WDTAENVREIMKKKGV 272
            D A  V +   KK V
Sbjct: 631 MDYAWKVYDQTIKKDV 646



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 110/214 (51%), Gaps = 2/214 (0%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           VV+WN++I G+V+   ++EA   F  ML   V PD FTFAS +  C  L + +    VH+
Sbjct: 241 VVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHS 300

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
            +I    + +  +  ALIDMY+KC   +   +VFD +   +   WN++IS  A  G   D
Sbjct: 301 KLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFND 360

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           A  +F +M+      +      +L A +    + +GR+   H+  R  +   +    A+V
Sbjct: 361 ALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHL-VRNLLNSDIILGSALV 419

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           D+  + G +EEA+ +  S+ +E + V + ALL+ 
Sbjct: 420 DMYSKCGMVEEAHQVFRSL-LERNEVSYNALLAG 452



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 2/223 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++++ +WN+MI  + R   + E LR +  M  S    DKFTF SVI  C  +  +   
Sbjct: 135 MPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGV 194

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             + + +++  +  N  +  AL+D Y++ G +  A    D ++   V  WNA+I+G    
Sbjct: 195 RQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKI 254

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A  IF +M    V PD+ TF   L  C      + G++    + +    +     
Sbjct: 255 LSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIA-CGFKGDTFV 313

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTF 223
             A++D+  +    E    +   M  E + V W +++SA   F
Sbjct: 314 GNALIDMYAKCDDEESCLKVFDEMG-ERNQVTWNSIISAEAQF 355



 Score = 39.7 bits (91), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 40/193 (20%), Positives = 82/193 (42%), Gaps = 15/193 (7%)

Query: 34  SSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQ 93
           +S V P    ++S+I  C    +      +H  +I      +  L   ++ +Y++ G + 
Sbjct: 66  ASDVNP--LPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLD 123

Query: 94  ---MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150
               A+++F+ +   +++ WN MI   A      +   ++ +M       D  TF  ++ 
Sbjct: 124 DLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIK 183

Query: 151 ACSHCGLVEE--GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT--M 206
           AC     +E+  G +       +  +   L   GA+VD   R G +++A   +TS+    
Sbjct: 184 ACI---AMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDA---VTSLDEIE 237

Query: 207 EPDVVVWRALLSA 219
              VV W A+++ 
Sbjct: 238 GTSVVTWNAVIAG 250


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  351 bits (900), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 176/414 (42%), Positives = 259/414 (62%), Gaps = 5/414 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           +P KDV+SWN++I G+ +N    EA+  ++ M   K + P++ T+ S++   A +GAL  
Sbjct: 479 IPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQ 538

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  +I+  + L+  ++  LID+Y KCG++  A  +F  V +     WNA+IS   I
Sbjct: 539 GMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGI 598

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG A     +F +M    V PD +TF+ LL+ACSH G VEEG+  F  M+  Y I+P L+
Sbjct: 599 HGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSLK 657

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HYG MVDLLGRAG++E AY  I  M ++PD  +W ALL ACR    +ELG+ A   +  +
Sbjct: 658 HYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEV 717

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVLLSN+Y  + +W+  + VR + +++G++K+ G S +E+   +  F  G++S
Sbjct: 718 DSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQS 777

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+ + I + L  L  + KS G++P    VL DV E+EKE  L  HSE+LA+A+GI+ T 
Sbjct: 778 HPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTP 837

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           P + IRI KNLR+C DCH+  K ISR+ +R I+VRD  RFH F+ G+CSCGDYW
Sbjct: 838 PKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 117/224 (52%), Gaps = 14/224 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALR-FFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           +P KDV +WNSMI  +V N  F EA+  F++ +L S++ PD +TF  V+  C   G L  
Sbjct: 177 IPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVD 233

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H    +   + N  ++A+LI MYS+ G   +A+ +FD +   D+  WNAMISG+  
Sbjct: 234 GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQ 293

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G AA A  +  +M +  +  + +T + +L  C   G +         +   Y I+  LE
Sbjct: 294 NGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAM-----LIHLYVIKHGLE 348

Query: 180 H----YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                  A++++  + G++E+A      M +  DVV W ++++A
Sbjct: 349 FDLFVSNALINMYAKFGNLEDARKAFQQMFIT-DVVSWNSIIAA 391



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 111/219 (50%), Gaps = 1/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+ SWN+MI G ++N    +AL    EM    ++ +  T  S++  C +LG ++ A
Sbjct: 276 MPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTA 335

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +I+  +E +  +S ALI+MY+K G ++ A++ F  +   DV  WN++I+    +
Sbjct: 336 MLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQN 395

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                A   F KM++    PD +T + L +  +     +  R     +  R  +   +  
Sbjct: 396 DDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVI 455

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A+VD+  + G ++ A+ +   + ++ DV+ W  L++ 
Sbjct: 456 GNAVVDMYAKLGLLDSAHKVFEIIPVK-DVISWNTLITG 493



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 116/217 (53%), Gaps = 6/217 (2%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           DVVSWNS+I  + +N     A  FF +M  +  +PD  T  S+    A+     ++  VH
Sbjct: 381 DVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVH 440

Query: 65  NLIIEKK-IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
             I+ +  +  + ++  A++DMY+K G +  A +VF+ +   DV  WN +I+G A +GLA
Sbjct: 441 GFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLA 500

Query: 124 ADASAIFTKMEMFN-VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLEHY 181
           ++A  ++  ME    ++P+  T++ +L A +H G +++G K   H R  + ++   +   
Sbjct: 501 SEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKI--HGRVIKTNLHLDVFVA 558

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
             ++D+ G+ G + +A  L   +  E   V W A++S
Sbjct: 559 TCLIDVYGKCGRLVDAMSLFYQVPQESS-VTWNAIIS 594



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 9/156 (5%)

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
           L++  K++  FI S  L+++Y+  G + +++  FD + + DV  WN+MIS    +G   +
Sbjct: 142 LVVAGKVQSIFI-STRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHE 200

Query: 126 ASAIFTKMEMFN-VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLEHYGA 183
           A   F ++ + + + PD  TF  +L A   CG + +GRK   H  + +   Q  +    +
Sbjct: 201 AIGCFYQLLLVSEIRPDFYTFPPVLKA---CGTLVDGRKI--HCWAFKLGFQWNVFVAAS 255

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++ +  R G    A  L   M    D+  W A++S 
Sbjct: 256 LIHMYSRFGFTGIARSLFDDMPFR-DMGSWNAMISG 290


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  351 bits (900), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 176/418 (42%), Positives = 247/418 (59%), Gaps = 14/418 (3%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSS--KVEPDKFTFASVIYGCARLGALN-- 58
           ++DVV+W  MIGG+ ++   ++AL    EM     +  P+ FT +  +  CA L AL+  
Sbjct: 437 ERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIG 496

Query: 59  ---HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
              HAY + N    ++  +   +S  LIDMY+KCG I  A+ VFD +   +   W ++++
Sbjct: 497 KQIHAYALRN----QQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMT 552

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           G  +HG   +A  IF +M       D +T L +L ACSH G++++G +YF+ M++ + + 
Sbjct: 553 GYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVS 612

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVN 235
           P  EHY  +VDLLGRAG +  A  LI  M MEP  VVW ALLS CR   ++ELGE A   
Sbjct: 613 PGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKK 672

Query: 236 ISRLMG---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKA 292
           I+ L     G Y LLSNMY    RW     +R +M+ KG++K  G SW+E       F  
Sbjct: 673 ITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFV 732

Query: 293 GDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGI 352
           GD++HP A+ I ++L   +QR K  G++P T   L DV +EEK+  L+ HSEKLALAYGI
Sbjct: 733 GDKTHPHAKEIYQVLSDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGI 792

Query: 353 LKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           L T  G  IRI+KNLR+C DCH+    +SR++   II+RD  RFH F+ GLCSC  YW
Sbjct: 793 LTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHEIILRDSSRFHHFKNGLCSCKGYW 850



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 133/267 (49%), Gaps = 51/267 (19%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFF------------------------------- 29
           MP KDVVSWN+M+ G+ +  RF++A+R F                               
Sbjct: 290 MPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEA 349

Query: 30  ----REMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIEL--------NFI 77
               R+MLSS ++P++ T  SV+ GCA +GAL H   +H   I+  ++L        N +
Sbjct: 350 LGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMV 409

Query: 78  LSAALIDMYSKCGKIQMAKEVFDTV--QRNDVSVWNAMISGVAIHGLAADASAIFTKM-- 133
           ++  LIDMY+KC K+ +A+ +FD++  +  DV  W  MI G + HG A  A  + ++M  
Sbjct: 410 IN-QLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFE 468

Query: 134 EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGRAG 192
           E     P++ T    L AC+    +  G++   + +R++ +  P L     ++D+  + G
Sbjct: 469 EDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVP-LFVSNCLIDMYAKCG 527

Query: 193 HIEEAYGLITSMTMEPDVVVWRALLSA 219
            I +A  +  +M ME + V W +L++ 
Sbjct: 528 DIGDARLVFDNM-MEKNEVTWTSLMTG 553



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 106/226 (46%), Gaps = 3/226 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D  V  WNS+I  +  N R ++ L  F  M S    PD +TF  V   C  + ++     
Sbjct: 89  DAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDS 148

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            H L        N  +  AL+ MYS+CG +  A++VFD +   DV  WN++I   A  G 
Sbjct: 149 SHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGK 208

Query: 123 AADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              A  +F+KM   F   PD IT + +L  C+  G    G+++     +   IQ      
Sbjct: 209 PKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVG- 267

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
             +VD+  + G ++EA  + ++M ++ DVV W A+++      R E
Sbjct: 268 NCLVDMYAKFGMMDEANTVFSNMPVK-DVVSWNAMVAGYSQIGRFE 312



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 109/261 (41%), Gaps = 45/261 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLGALNH 59
           MP  DVVSWNS+I  + +  +   AL  F +M +     PD  T  +V+  CA +G  + 
Sbjct: 188 MPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSL 247

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAM------ 113
               H   +  ++  N  +   L+DMY+K G +  A  VF  +   DV  WNAM      
Sbjct: 248 GKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQ 307

Query: 114 -----------------------------ISGVAIHGLAADASAIFTKMEMFNVLPDSIT 144
                                        ISG A  GL  +A  +  +M    + P+ +T
Sbjct: 308 IGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVT 367

Query: 145 FLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG-------AMVDLLGRAGHIEEA 197
            + +L+ C+  G +  G++   +   +Y +  +   +G        ++D+  +   ++ A
Sbjct: 368 LISVLSGCASVGALMHGKEIHCYA-IKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIA 426

Query: 198 YGLITSMT-MEPDVVVWRALL 217
             +  S++  E DVV W  ++
Sbjct: 427 RAMFDSLSPKERDVVTWTVMI 447



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 12/128 (9%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +K+ V+W S++ G+  +   +EAL  F EM     + D  T   V+Y C+  G ++  
Sbjct: 539 MMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQG 598

Query: 61  YWVHNLIIEKKIELNFILS------AALIDMYSKCGKIQMAKEVFDTVQRNDVS-VWNAM 113
               N     +++ +F +S      A L+D+  + G++  A  + + +       VW A+
Sbjct: 599 MEYFN-----RMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAL 653

Query: 114 ISGVAIHG 121
           +S   IHG
Sbjct: 654 LSCCRIHG 661


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  350 bits (899), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 172/415 (41%), Positives = 258/415 (62%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE--PDKFTFASVIYGCARLGALN 58
           MP K+VVSW++MI  + +N +  EAL  FREM+ +  +  P+  T  SV+  CA   AL 
Sbjct: 235 MPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALE 294

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H  I+ + ++    + +ALI MY++CGK++  + +FD + + DV +WN++IS   
Sbjct: 295 QGKLIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYG 354

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG    A  IF +M      P  I+F+ +L ACSH GLVEEG+K F+ M   + IQP +
Sbjct: 355 LHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSV 414

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           EHY  MVDLLGRA  ++EA  +I  + +EP   VW +LL ACR    +EL E A   + +
Sbjct: 415 EHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFK 474

Query: 239 L---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L     G+YVLL+++Y   + WD  + V++++  + ++K  G+SW+E+   I+ F + D 
Sbjct: 475 LEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRKIYSFTSVDE 534

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
            +P+ + +  +L +L    K  G+ P T+LVL D+ +EEKE  +  HSEKLA+A+G++ T
Sbjct: 535 FNPQGEQLHALLVNLSNEMKQRGYTPQTKLVLYDLDQEEKERIVLGHSEKLAVAFGLINT 594

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           S G  IRI+KNLR+C DCHS  K IS+   R I+VRD  RFH F+ G+CSCGDYW
Sbjct: 595 SKGDTIRITKNLRLCEDCHSVTKFISKFADREIMVRDLNRFHHFKDGVCSCGDYW 649



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 115/235 (48%), Gaps = 16/235 (6%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIE 69
           N +I    +     +AL     +LS +  P + T   +I   AR  +L+ A  VH L+++
Sbjct: 42  NHLIQSLCKQGNLKQALY----LLSHESNPTQQTCELLILSAARRNSLSDALDVHQLLVD 97

Query: 70  KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAI 129
              + +  L+  LI+M+S+   +  A++VFD  ++  + VWNA+   +A+ G   D   +
Sbjct: 98  GGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLEL 157

Query: 130 FTKMEMFNVLPDSITFLGLLTAC--SHC--GLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           + +M M  V  D  T+  LL AC  S C    +++G++   H+  R+     +     ++
Sbjct: 158 YPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHIL-RHGYGAHVHVMTTLM 216

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC-----RTFKRLELGEVAIVN 235
           D+  R G +  A  +   M ++ +VV W A++ AC     + ++ LEL    ++N
Sbjct: 217 DMYARFGCVSYASAVFDEMPVK-NVVSWSAMI-ACYAKNGKPYEALELFREMMLN 269



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 107/225 (47%), Gaps = 14/225 (6%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCAR----LGALNH 59
           + +  WN++        R ++ L  +  M    V  D+FT+  ++  C      +  L  
Sbjct: 133 RTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQK 192

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  I+      +  +   L+DMY++ G +  A  VFD +   +V  W+AMI+  A 
Sbjct: 193 GKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAK 252

Query: 120 HGLAADASAIFTKMEMFNV---LPDSITFLGLLTACSHCGLVEEGRKYFDHM--RSRYSI 174
           +G   +A  +F +M M N    +P+S+T + +L AC+    +E+G+    ++  R   SI
Sbjct: 253 NGKPYEALELFREM-MLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSI 311

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            P +    A++ +  R G +E    LI     + DVV+W +L+S+
Sbjct: 312 LPVI---SALITMYARCGKLESG-QLIFDRMHKKDVVLWNSLISS 352


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  350 bits (899), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 175/414 (42%), Positives = 255/414 (61%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNH 59
           +P KDV+SWNS+I G+ +N   +EA+  +  M   S   P++ T+ S++   ++LGAL  
Sbjct: 403 LPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQ 462

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
               H  +I+  +  +  +S  L+DMY KCGK+  A  +F  V       WNA+IS   +
Sbjct: 463 GMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGL 522

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG    A  +F +M+   V PD ITF+ LL+ACSH GLV+EG+  F  M+  Y I+P L+
Sbjct: 523 HGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLK 582

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HYG MVDL GRAGH+E+A+  + +M + PDV VW ALL ACR  + +EL       ++ +
Sbjct: 583 HYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKV 642

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVLLSN+Y  L  W+  + VR + + +G++K+ G S +E+   I  F  G+++
Sbjct: 643 ESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFYTGNQT 702

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+ + I   L +L  + KS G++P    VL DV ++EKE  L  HSE+LA+A+GI+ T 
Sbjct: 703 HPKCEEIYSELRNLTAKMKSIGYVPDYNFVLQDVEDDEKENILTSHSERLAMAFGIISTP 762

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           P T ++I KNLR+C DCH+  K IS++  R IIVRD  RFH F+ G+CSCGDYW
Sbjct: 763 PKTTLQIFKNLRVCGDCHNATKFISKITEREIIVRDSNRFHHFKDGVCSCGDYW 816



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 115/227 (50%), Gaps = 14/227 (6%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNHAYW 62
           KDV +WNSMI  + R   F  A+  F E LS+  ++ D +TF  VI  C   G L+    
Sbjct: 104 KDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC---GNLDDGRK 160

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH L+++   E +  ++A+ I  YS+ G + +A  +FD +   D+  WNAMISG  ++G 
Sbjct: 161 VHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGK 220

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH-- 180
            A+A  +F +M   +V  DS+T   LL  C     +  G      +   Y+I+  LE   
Sbjct: 221 VAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGV-----LIHVYAIKLGLEFDL 275

Query: 181 --YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKR 225
               A++++  + G +  A  +   M +  D+V W +LL+A    K+
Sbjct: 276 FVCNALINMYAKFGELRSAETIFNQMKVR-DIVSWNSLLAAFEQNKK 321



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 118/220 (53%), Gaps = 4/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D+VSWNS++  F +N +   AL  + +M S  V PD  T  S+    A LG    +
Sbjct: 301 MKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSS 360

Query: 61  YWVHNLIIEKKIELNFI-LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             +H  +  +   L+ I L  A+IDMY+K G I  A++VF+ +   DV  WN++I+G + 
Sbjct: 361 RSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQ 420

Query: 120 HGLAADASAIFTKMEMFN-VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +GLA +A  +++ M  ++  +P+  T++ +LTA S  G +++G K    +   + +   +
Sbjct: 421 NGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNF-LYFDI 479

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
                +VD+ G+ G + +A  L   +  +   V W A++S
Sbjct: 480 FVSTCLVDMYGKCGKLADALSLFYEVPHQSS-VSWNAIIS 518



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 108/216 (50%), Gaps = 1/216 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D+ +WN+MI GF  N +  EAL  F EM    V  D  T +S++  C +L  +     +
Sbjct: 203 RDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLI 262

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   I+  +E +  +  ALI+MY+K G+++ A+ +F+ ++  D+  WN++++    +   
Sbjct: 263 HVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKP 322

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  ++ KM    V+PD +T + L +  +  G     R     +  R      +    A
Sbjct: 323 VIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNA 382

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++D+  + G I+ A  +   + ++ DV+ W +L++ 
Sbjct: 383 IIDMYAKLGFIDSARKVFEGLPVK-DVISWNSLITG 417



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H L++      +  LSA LI+ Y+  G I  A+  FD +Q  DV  WN+MIS  A  G 
Sbjct: 62  LHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIGH 121

Query: 123 AADASAIFTKMEMFNVL-PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              A   F +    + L  D  TF  ++ A   CG +++GRK    +  +   +  +   
Sbjct: 122 FHAAVDCFNEFLSTSFLQSDHYTFPPVIRA---CGNLDDGRK-VHCLVLKLGFECDVYIA 177

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            + +    R G +  A  L  +M M  D+  W A++S 
Sbjct: 178 ASFIHFYSRFGFVSLACNLFDNM-MIRDIGTWNAMISG 214


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  350 bits (899), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 176/414 (42%), Positives = 259/414 (62%), Gaps = 5/414 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           +P KDV+SWN++I G+ +N    EA+  ++ M   K + P++ T+ S++   A +GAL  
Sbjct: 246 IPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQ 305

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  +I+  + L+  ++  LID+Y KCG++  A  +F  V +     WNA+IS   I
Sbjct: 306 GMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGI 365

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG A     +F +M    V PD +TF+ LL+ACSH G VEEG+  F  M+  Y I+P L+
Sbjct: 366 HGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSLK 424

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HYG MVDLLGRAG++E AY  I  M ++PD  +W ALL ACR    +ELG+ A   +  +
Sbjct: 425 HYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEV 484

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVLLSN+Y  + +W+  + VR + +++G++K+ G S +E+   +  F  G++S
Sbjct: 485 DSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQS 544

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+ + I + L  L  + KS G++P    VL DV E+EKE  L  HSE+LA+A+GI+ T 
Sbjct: 545 HPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTP 604

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           P + IRI KNLR+C DCH+  K ISR+ +R I+VRD  RFH F+ G+CSCGDYW
Sbjct: 605 PKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 658



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALR-FFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           +P KDV +WNSMI  +V N  F EA+  F++ +L S++ PD +TF  V+  C   G L  
Sbjct: 77  IPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVD 133

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H    +   + N  ++A+LI MYS+ G   +A+ +FD +   D+  WNAMISG+  
Sbjct: 134 GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQ 193

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTAC----SHCGLVEEGRKYFD 166
           +G AA A  +  +M +  +  + +T + +L       +  GL++   K F+
Sbjct: 194 NGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFE 244



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 106/220 (48%), Gaps = 36/220 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+ SWN+MI G ++N    +AL    EM   ++E  K  F +V+            
Sbjct: 176 MPFRDMGSWNAMISGLIQNGNAAQALDVLDEM---RLEGIKMNFVTVVS----------- 221

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                            +    +DMY+K G +  A +VF+ +   DV  WN +I+G A +
Sbjct: 222 -----------------ILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQN 264

Query: 121 GLAADASAIFTKMEMFN-VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQL 178
           GLA++A  ++  ME    ++P+  T++ +L A +H G +++G K   H R  + ++   +
Sbjct: 265 GLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKI--HGRVIKTNLHLDV 322

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
                ++D+ G+ G + +A  L   +  E   V W A++S
Sbjct: 323 FVATCLIDVYGKCGRLVDAMSLFYQVPQESS-VTWNAIIS 361



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 25/221 (11%)

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
           L++  K++  FI S  L+++Y+  G + +++  FD + + DV  WN+MIS    +G   +
Sbjct: 42  LVVAGKVQSIFI-STRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHE 100

Query: 126 ASAIFTKMEMFN-VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLEHYGA 183
           A   F ++ + + + PD  TF  +L A   CG + +GRK   H  + +   Q  +    +
Sbjct: 101 AIGCFYQLLLVSEIRPDFYTFPPVLKA---CGTLVDGRKI--HCWAFKLGFQWNVFVAAS 155

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS-------ACRTFK-----RLELGEV 231
           ++ +  R G    A  L   M    D+  W A++S       A +        RLE  ++
Sbjct: 156 LIHMYSRFGFTGIARSLFDDMPFR-DMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKM 214

Query: 232 AIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGV 272
             V +  ++     +  +MY  L   D+A  V EI+  K V
Sbjct: 215 NFVTVVSILP----VFVDMYAKLGLLDSAHKVFEIIPVKDV 251


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  350 bits (899), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 172/413 (41%), Positives = 255/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  + +VSWN MI G+ +N   DEA+  FR+MLS  ++P +     V   C++L AL   
Sbjct: 371 MEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLG 430

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++  +  +  +S+++IDMY+K G I +++ +FD ++  DV+ WN +I+G  IH
Sbjct: 431 KELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIH 490

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F KM    + PD  TF G+L ACSH GLVE+G +YF+ M + ++I+P+LEH
Sbjct: 491 GRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEH 550

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  +VD+LGRAG I++A  LI  M  +PD  +W +LLS+CR    L LGE     ++ + 
Sbjct: 551 YTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELE 610

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                +YVL+SN++    +WD    VR  MK  G++K  G SW+E+ G +H F  GD   
Sbjct: 611 PEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEML 670

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE + + +    L  +  S G+ P T  VL D+ EE+K G L  HSEKLA+++G+L T+ 
Sbjct: 671 PELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAK 730

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  +R+ KNLRIC DCH+  K IS+++ R I+VRD  RFH F  G+CSCGDYW
Sbjct: 731 GLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 783



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 110/219 (50%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K V SWN+++ G+ +N+   +AL  + +M  S ++PD FT  S++  C+R+ +L++ 
Sbjct: 270 MDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYG 329

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   +   + ++  +  +L+ +Y  CGK   A+ +FD ++   +  WN MI+G + +
Sbjct: 330 EEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQN 389

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  +F +M    + P  I  + +  ACS    +  G++       +  +   +  
Sbjct: 390 GLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKE-LHCFALKAHLTEDIFV 448

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +++D+  + G I  +  +   +  E DV  W  +++ 
Sbjct: 449 SSSIIDMYAKGGCIGLSQRIFDRLR-EKDVASWNVIIAG 486



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 81/152 (53%), Gaps = 2/152 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYW 62
           K++  WN+++  + RN  F++A+  F E++S ++ +PD FT   VI  CA L  L     
Sbjct: 170 KNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQI 229

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMA-KEVFDTVQRNDVSVWNAMISGVAIHG 121
           +H +  +  +  +  +  ALI MY KCG ++ A K VFD +    VS WNA++ G A + 
Sbjct: 230 IHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNS 289

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
               A  ++ +M    + PD  T   LL ACS
Sbjct: 290 DPRKALDLYLQMTDSGLDPDWFTIGSLLLACS 321



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 8/147 (5%)

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           +F+L+  +I MYS CG    ++ VFD ++R ++  WNA++S    + L  DA +IF+  E
Sbjct: 140 DFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFS--E 197

Query: 135 MFNVL---PDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGR 190
           + +V    PD+ T   ++ AC+  GL++ G     H M ++  +   +    A++ + G+
Sbjct: 198 LISVTEHKPDNFTLPCVIKACA--GLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGK 255

Query: 191 AGHIEEAYGLITSMTMEPDVVVWRALL 217
            G +EEA   +  +     V  W ALL
Sbjct: 256 CGLVEEAVKRVFDLMDTKTVSSWNALL 282


>gi|224135801|ref|XP_002327307.1| predicted protein [Populus trichocarpa]
 gi|222835677|gb|EEE74112.1| predicted protein [Populus trichocarpa]
          Length = 527

 Score =  350 bits (899), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 182/417 (43%), Positives = 258/417 (61%), Gaps = 16/417 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +++VSWNSMI      A  +EAL  FR++    + PD  TF+ V+  CA      HA
Sbjct: 120 MEFRNLVSWNSMI------AAEEEALLLFRQLYREGLAPDWCTFSIVLKACAGFVTERHA 173

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V++ +++   E + +L+  LI  Y++CG I  +K+VFD ++  DV  WN+MI   A+H
Sbjct: 174 LAVYSQVVKAGFEDDRVLANTLIHAYARCGSISFSKQVFDKMRSRDVVSWNSMIKAYALH 233

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +A  +F++M   NV PDS T + LL+ACSH GLVEEG   FD M   + + PQL+H
Sbjct: 234 GQAKEALHLFSEM---NVRPDSATMVALLSACSHAGLVEEGINIFDSMSMNHGVSPQLDH 290

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MVD+LGRAG + EA  LI+ M M+PD VVW ALLS+CR +   +L ++A   +  L 
Sbjct: 291 YACMVDILGRAGLLLEAGELISRMPMKPDSVVWSALLSSCRKYGETQLAKLAADKLKELE 350

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
            G+   YV +SN+YC    ++ A  +R+ M    VRK  G SW+E+   +H+F +G R H
Sbjct: 351 PGNSLGYVQISNIYCSGGSYNEAGLIRDEMNGSRVRKEPGLSWIEIENRVHEFASGGRRH 410

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ +AI   L SLI + K  G++P T L L D+ EE K+  LYHHSEKLAL + ++    
Sbjct: 411 PQREAIYAKLYSLIGQLKGVGYVPETSLALQDIEEEHKQEQLYHHSEKLALVFALMSEGS 470

Query: 358 ----GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
               G  IRI KN+RIC DCH+++K+ S LL++ I+VRD  RFH F+  +CSC DYW
Sbjct: 471 LCCGGGVIRIVKNIRICVDCHNFMKLASDLLQKEIVVRDSNRFHHFKNRMCSCNDYW 527



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 2/73 (2%)

Query: 85  MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSIT 144
           MY+KCG +  A++VFD + R +V  W A+ISG A HG + +  ++F+ M + +  P+   
Sbjct: 1   MYAKCGDLDRARQVFDEMGRRNVVSWTALISGYAQHGRSYECFSLFSDM-LVDCYPNEFA 59

Query: 145 FLGLLTACSH-CG 156
           F  ++ +C + CG
Sbjct: 60  FASVIISCDYVCG 72


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  350 bits (899), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 179/413 (43%), Positives = 245/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D +SW ++I G+ ++   +EAL  F EM       ++ TF S +  CA + AL   
Sbjct: 273 MPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELG 332

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +++  +E    +  AL+ MY KCG I  A  VF+ ++  +V  WN MI+G A H
Sbjct: 333 KQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARH 392

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F  M+   +LPD +T +G+L+ACSH GLV++G +YF  M   Y I    +H
Sbjct: 393 GFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKH 452

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  M+DLLGRAG +++A  L+ +M  EPD   W ALL A R     ELGE A   I  + 
Sbjct: 453 YTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEME 512

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    RW     +R  M+ +GV+K  G SW+E+   IH F  GD  H
Sbjct: 513 PDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVH 572

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE   I   L  L  + K EG++ +T+LVL DV EEEK   L +HSEKLA+A+GIL    
Sbjct: 573 PERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPA 632

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH+ +K IS+++ R+II+RD  RFH F GG CSCGDYW
Sbjct: 633 GRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGDYW 685



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 12/169 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D VSWN+MI G+ +N    EA R F E   S V  D FT+ +++ G  + G L+ A
Sbjct: 149 MPERDEVSWNTMISGYAQNGELLEAQRLFEE---SPVR-DVFTWTAMVSGYVQNGMLDEA 204

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V + + EK    N +   A+I  Y +C ++  A+E+F+ +   +VS WN MI+G A +
Sbjct: 205 RRVFDGMPEK----NSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQN 260

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169
           G  A A   F +M       DSI++  ++   +  G  EE    F  M+
Sbjct: 261 GDIAQARNFFDRMPQ----RDSISWAAIIAGYAQSGYGEEALHLFVEMK 305



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 138/329 (41%), Gaps = 62/329 (18%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM----------------LSSKVEPDKFTF 44
           MP++DVVSWN+M+ G+ +N    EA   F EM                 + ++E  +  F
Sbjct: 56  MPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLF 115

Query: 45  AS------VIYGCARLGALNHAYWVHNL-IIEKKIELNFILSAALIDMYSKCGKIQMAKE 97
            S      + + C   G +     V    I ++  E + +    +I  Y++ G++  A+ 
Sbjct: 116 ESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQR 175

Query: 98  VFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM------------------------ 133
           +F+     DV  W AM+SG   +G+  +A  +F  M                        
Sbjct: 176 LFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQA 235

Query: 134 -EMFNVLP--DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGR 190
            E+F  +P  +  ++  ++T  +  G + + R +FD M  R SI      + A++    +
Sbjct: 236 RELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSIS-----WAAIIAGYAQ 290

Query: 191 AGHIEEAYGLITSMTMEPDVV---VWRALLSACRTFKRLELGEVAIVNISR--LMGGDYV 245
           +G+ EEA  L   M  + + +    + + LS C     LELG+     + +  L  G YV
Sbjct: 291 SGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYV 350

Query: 246 --LLSNMYCYLKRWDTAENVREIMKKKGV 272
              L  MYC     D A  V E +++K V
Sbjct: 351 GNALLVMYCKCGNIDDAYIVFEGIEEKEV 379



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 10/129 (7%)

Query: 91  KIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150
            ++ A+ +FD +   DV  WNAM+SG A +G   +A  IF +M   N    SI++ G+L 
Sbjct: 45  NLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKN----SISWNGMLA 100

Query: 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
           A    G +E+ R+ F+          +L  +  M+    +   + +A G+   M  E D 
Sbjct: 101 AYVQNGRIEDARRLFES-----KADWELISWNCMMGGYVKRNRLVDARGIFDRMP-ERDE 154

Query: 211 VVWRALLSA 219
           V W  ++S 
Sbjct: 155 VSWNTMISG 163



 Score = 44.7 bits (104), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 86/223 (38%), Gaps = 14/223 (6%)

Query: 50  GCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV 109
           GC R   L  A     L+ ++  E + +   A++  Y++ G ++ AKE+FD +   +   
Sbjct: 39  GCVRYRNLRAA----RLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSIS 94

Query: 110 WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169
           WN M++    +G   DA  +F     + ++  +    G +        + + R  FD M 
Sbjct: 95  WNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKR----NRLVDARGIFDRMP 150

Query: 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG 229
            R  +      +  M+    + G + EA  L     +  DV  W A++S       L+  
Sbjct: 151 ERDEVS-----WNTMISGYAQNGELLEAQRLFEESPVR-DVFTWTAMVSGYVQNGMLDEA 204

Query: 230 EVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGV 272
                 +       +  +   Y   KR D A  + E M  + V
Sbjct: 205 RRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNV 247


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  350 bits (899), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 174/411 (42%), Positives = 258/411 (62%), Gaps = 4/411 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +DVV+W +MI G+ +N    +AL  FR M+    +P+ +T A+V+   + L +L+H   +
Sbjct: 375 RDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQL 434

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAIHGL 122
           H + I  +   +  +  ALI MYS+ G I+ A+++F+ +    D   W +MI  +A HGL
Sbjct: 435 HAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGL 494

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F KM   N+ PD IT++G+L+AC+H GLVE+G+ YF+ M++ ++I+P   HY 
Sbjct: 495 GNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYA 554

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            M+DLLGRAG +EEAY  I +M +EPDVV W +LLS+CR  K ++L +VA   ++ I   
Sbjct: 555 CMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPN 614

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             G Y+ L+N      +W+ A  VR+ MK K V+K QG SW+++   +H F   D  HP+
Sbjct: 615 NSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQ 674

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
             AI  ++  + +  K  GF+P T  VL D+ +E KE  L HHSEKLA+A+ ++ T   T
Sbjct: 675 RDAIYCMISKIWKEIKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFALINTPKHT 734

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            +RI KNLR+C+DCHS I+ IS L+ R IIVRD  RFH F+ G CSC DYW
Sbjct: 735 TVRIMKNLRVCNDCHSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW 785



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 115/257 (44%), Gaps = 47/257 (18%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCA-----RL 54
           M D D+VSWNS+I G+        AL  F  ML SS ++PDKFT  SV+  CA     +L
Sbjct: 237 MTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKL 296

Query: 55  GALNHAYWV---------------------------HNLI-IEKKIELNFILSAALIDMY 86
           G   HA+ V                           H ++ I     LN I   +L+D Y
Sbjct: 297 GKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGY 356

Query: 87  SKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFL 146
            K G I  A+ +FD+++  DV  W AMI G A +GL +DA  +F  M      P++ T  
Sbjct: 357 FKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLA 416

Query: 147 GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY------GAMVDLLGRAGHIEEAYGL 200
            +L+  S            DH +  +++  +LE         A++ +  R+G I++A  +
Sbjct: 417 AVLSVISSLA-------SLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKI 469

Query: 201 ITSMTMEPDVVVWRALL 217
              +    D + W +++
Sbjct: 470 FNHICSYRDTLTWTSMI 486



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 111/238 (46%), Gaps = 36/238 (15%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  D VSW +MI G+     F  A+  F  M+SS + P +FTF +V+  CA   AL+  
Sbjct: 105 IPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVG 164

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ +++        ++ +L++MY+KCG   MAK VFD ++  D S WN MIS     
Sbjct: 165 KKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQF 224

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                A A+F +M      PD +++  ++T   H G               Y I+  LE 
Sbjct: 225 CQFDLALALFDQMTD----PDIVSWNSIITGYCHQG---------------YDIR-ALET 264

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           +  M                + S +++PD     ++LSAC   + L+LG+    +I R
Sbjct: 265 FSFM----------------LKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVR 306



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 86/244 (35%), Gaps = 80/244 (32%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIE 69
           N+++  +V+     +A R F EM      P K TF+                W       
Sbjct: 52  NNLLNLYVKTGSSSDAHRLFDEM------PLKTTFS----------------W------- 82

Query: 70  KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAI 129
                N ILSA     ++K G +  A+ VFD + + D   W  MI G    GL   A   
Sbjct: 83  -----NTILSA-----HAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHA 132

Query: 130 FTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK-------------------------- 163
           F +M    + P   TF  +L +C+    ++ G+K                          
Sbjct: 133 FLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAK 192

Query: 164 ---------YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
                     FD MR +         +  M+ +  +    + A  L   MT +PD+V W 
Sbjct: 193 CGDSVMAKVVFDRMRLK-----DTSTWNTMISMHMQFCQFDLALALFDQMT-DPDIVSWN 246

Query: 215 ALLS 218
           ++++
Sbjct: 247 SIIT 250



 Score = 39.7 bits (91), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 5/109 (4%)

Query: 63  VHNLIIEKKIE-LNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           +H  II+  +  L   L+  L+++Y K G    A  +FD +       WN ++S  A  G
Sbjct: 34  IHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAG 93

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS 170
               A  +F ++      PDS+++  ++   +H GL +     F  M S
Sbjct: 94  NLDSARRVFDEIPQ----PDSVSWTTMIVGYNHLGLFKSAVHAFLRMVS 138


>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
          Length = 648

 Score =  350 bits (899), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 178/414 (42%), Positives = 258/414 (62%), Gaps = 5/414 (1%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P KD+V+W +M+ G+ +NA   +AL  F  M    +  D+ +    I  CA+LGAL  A 
Sbjct: 235 PVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAA 294

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           WV  +        N ++ + L+DMY+KCG I  A +VF  +Q  +V  +++MI+G+A HG
Sbjct: 295 WVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHG 354

Query: 122 LAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            A++A A+F +M    NV P+ +TF+G+LTACSH G+V EGR YF  M+ +Y I P  +H
Sbjct: 355 RASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADH 414

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MVDLLGRAG ++EA  L+ SM++ P   VW ALL ACR   + E+ +V   ++ +L 
Sbjct: 415 YACMVDLLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLFKLE 474

Query: 241 G---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLE-LAGVIHQFKAGDRS 296
               G+YVLLSN+     +W+    VR +M+K+ ++K    S  E   G++HQF AGD +
Sbjct: 475 PESIGNYVLLSNILASAGKWEEVSKVRILMRKQRLKKDPAVSLFEGRDGLVHQFFAGDNA 534

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP    I K L  L+ + K EG++P    ++ DV++EEKE  L  HSEKLAL++G+L   
Sbjct: 535 HPRTHEIKKALLELVAKLKLEGYVPILSSIVYDVNDEEKERLLMGHSEKLALSFGLLTLG 594

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  IRI KNLRIC DCH +++++SR+    IIVRD +RFH F+ G CSCG +W
Sbjct: 595 SGCTIRIIKNLRICDDCHLFMQLVSRVESVEIIVRDNMRFHHFKNGECSCGGFW 648



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 81/193 (41%), Gaps = 44/193 (22%)

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           + ++ +E + I   +++  Y++ G ++ A+EVF      D+  W AM++G A + +   A
Sbjct: 199 VFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKDMVAWTAMVTGYAQNAMPVKA 258

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSH-------------------------------- 154
             +F +M    ++ D ++  G ++AC+                                 
Sbjct: 259 LEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAAWVQEIAERTGFGNNVVVGSGLVDM 318

Query: 155 ---CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM----TME 207
              CGL++E  K F  M+ +      +  Y +M+  L   G   EA  L   M     +E
Sbjct: 319 YAKCGLIDEASKVFYGMQEK-----NVYTYSSMIAGLASHGRASEAIALFKEMVNRANVE 373

Query: 208 PDVVVWRALLSAC 220
           P+ V +  +L+AC
Sbjct: 374 PNHVTFIGVLTAC 386



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 11/156 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           M +K+V +++SMI G   + R  EA+  F+EM++ + VEP+  TF  V+  C+  G +  
Sbjct: 335 MQEKNVYTYSSMIAGLASHGRASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGE 394

Query: 60  A-YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS----VWNAMI 114
             Y+   +  +  I  +    A ++D+  + G   +  E  D V+   V+    VW A++
Sbjct: 395 GRYYFAQMKDKYGIMPSADHYACMVDLLGRAG---LVDEALDLVRSMSVTPHGGVWGALL 451

Query: 115 SGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150
               IHG +  A  +     +F + P+SI    LL+
Sbjct: 452 GACRIHGKSEIAKVV--AEHLFKLEPESIGNYVLLS 485


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  350 bits (899), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 172/413 (41%), Positives = 255/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  + +VSWN MI G+ +N   DEA+  FR+MLS  ++P +     V   C++L AL   
Sbjct: 469 MEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLG 528

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++  +  +  +S+++IDMY+K G I +++ +FD ++  DV+ WN +I+G  IH
Sbjct: 529 KELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIH 588

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F KM    + PD  TF G+L ACSH GLVE+G +YF+ M + ++I+P+LEH
Sbjct: 589 GRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEH 648

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  +VD+LGRAG I++A  LI  M  +PD  +W +LLS+CR    L LGE     ++ + 
Sbjct: 649 YTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELE 708

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                +YVL+SN++    +WD    VR  MK  G++K  G SW+E+ G +H F  GD   
Sbjct: 709 PEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEML 768

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE + + +    L  +  S G+ P T  VL D+ EE+K G L  HSEKLA+++G+L T+ 
Sbjct: 769 PELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAK 828

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  +R+ KNLRIC DCH+  K IS+++ R I+VRD  RFH F  G+CSCGDYW
Sbjct: 829 GLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 881



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 110/219 (50%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K V SWN+++ G+ +N+   +AL  + +M  S ++PD FT  S++  C+R+ +L++ 
Sbjct: 368 MDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYG 427

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   +   + ++  +  +L+ +Y  CGK   A+ +FD ++   +  WN MI+G + +
Sbjct: 428 EEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQN 487

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  +F +M    + P  I  + +  ACS    +  G++       +  +   +  
Sbjct: 488 GLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKE-LHCFALKAHLTEDIFV 546

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +++D+  + G I  +  +   +  E DV  W  +++ 
Sbjct: 547 SSSIIDMYAKGGCIGLSQRIFDRLR-EKDVASWNVIIAG 584



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 118/236 (50%), Gaps = 16/236 (6%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYW 62
           K++  WN+++  + RN  F++A+  F E++S ++ +PD FT   VI  CA L  L     
Sbjct: 63  KNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQI 122

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H +  +  +  +  +  ALI MY KCG ++ A +VF+ +   ++  WN++I G + +G 
Sbjct: 123 IHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGF 182

Query: 123 AADASAIFTKM----EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
             ++   F +M    E F  +PD  T + +L  C+    +E+G      +  +  +  +L
Sbjct: 183 LQESFNAFREMLVGEESF--VPDVATLVTVLPVCAGEEDIEKGMAVHG-LAVKLGLNEEL 239

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA-------CRTFKRLE 227
               +++D+  +   + EA  L+     + ++V W +++         CRTF  L+
Sbjct: 240 MVNNSLIDMYSKCRFLSEAQ-LLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQ 294



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 114/272 (41%), Gaps = 47/272 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE--PDKFTFASVIYGCARLGALN 58
           MP++++VSWNS+I GF  N    E+   FREML  +    PD  T  +V+  CA    + 
Sbjct: 162 MPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIE 221

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               VH L ++  +    +++ +LIDMYSKC  +  A+ +FD   + ++  WN+MI G A
Sbjct: 222 KGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYA 281

Query: 119 IHGLAADASAIFTKME------------MFNVLP-------------------------D 141
                     +  KM+            + NVLP                         +
Sbjct: 282 REEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSN 341

Query: 142 SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
            +     + A + CG +    + FD M ++      +  + A++    +     +A  L 
Sbjct: 342 ELVANAFIAAYTRCGALCSSERVFDLMDTK-----TVSSWNALLCGYAQNSDPRKALDLY 396

Query: 202 TSMT---MEPDVVVWRALLSACRTFKRLELGE 230
             MT   ++PD     +LL AC   K L  GE
Sbjct: 397 LQMTDSGLDPDWFTIGSLLLACSRMKSLHYGE 428



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 81/147 (55%), Gaps = 9/147 (6%)

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           +F+L+  +I MYS CG    ++ VFD ++R ++  WNA++S    + L  DA +IF+  E
Sbjct: 33  DFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFS--E 90

Query: 135 MFNVL---PDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGR 190
           + +V    PD+ T   ++ AC+  GL++ G     H M ++  +   +    A++ + G+
Sbjct: 91  LISVTEHKPDNFTLPCVIKACA--GLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGK 148

Query: 191 AGHIEEAYGLITSMTMEPDVVVWRALL 217
            G +EEA  +   M  E ++V W +++
Sbjct: 149 CGLVEEAVKVFEHMP-ERNLVSWNSII 174


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  350 bits (898), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 181/413 (43%), Positives = 242/413 (58%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD VSW +M+  + +    +E L+ F EM       ++  FA V+  CA + AL   
Sbjct: 218 MPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECG 277

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +I     +   +  AL+ MY KCG ++ A+  F+ ++  DV  WN MI+G A H
Sbjct: 278 MQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARH 337

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  IF  M   +  PD IT +G+L ACSH GLVE+G  YF  M   + +  + EH
Sbjct: 338 GFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEH 397

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  M+DLLGRAG + EA+ L+  M  EPD  +W ALL A R  +  ELG  A   I  L 
Sbjct: 398 YTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELE 457

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    +W  A  +R +M+++GV+K  G SW+E+   +H F AGD  H
Sbjct: 458 PENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVH 517

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE + I   L  L  R K  G++ AT++VL DV EEEKE  L +HSEKLA+AYGIL   P
Sbjct: 518 PEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPP 577

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH+  K IS +  R+I++RD  RFH F GG CSCGDYW
Sbjct: 578 GRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 630



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 104/244 (42%), Gaps = 70/244 (28%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P+KD VSWN M+  +VRN R +EA    R + +S+ E D  ++ +++ G           
Sbjct: 33  PEKDAVSWNGMLAAYVRNGRVEEA----RGLFNSRTEWDVISWNALMSG----------- 77

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
                                   Y + GK+  A+E+FD +   DV  WN M+SG A  G
Sbjct: 78  ------------------------YVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRG 113

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR---------- 171
              +A  +F    + +V     T+  +++  +  G++EE R+ FD M  R          
Sbjct: 114 DMVEARRLFDAAPVRDVF----TWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVA 169

Query: 172 --------------YSIQP--QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRA 215
                         +++ P   +  +  M+    +AG +EEA  +  +M  + D V W A
Sbjct: 170 AYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP-QKDAVSWAA 228

Query: 216 LLSA 219
           +L+A
Sbjct: 229 MLAA 232



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 112/251 (44%), Gaps = 43/251 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVVSWN M+ G+ R     EA R F     +    D FT+ +V+ G A+ G L  A
Sbjct: 94  MPGRDVVSWNIMVSGYARRGDMVEARRLF----DAAPVRDVFTWTAVVSGYAQNGMLEEA 149

Query: 61  YWVHNLIIEKK-IELNFILSA--------------------------ALIDMYSKCGKIQ 93
             V + + E+  +  N +++A                           ++  Y++ G ++
Sbjct: 150 RRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLE 209

Query: 94  MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
            AK VFDT+ + D   W AM++  +  G + +   +F +M       +   F  +L+ C+
Sbjct: 210 EAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCA 269

Query: 154 -----HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
                 CG+   GR     +R+ Y +   + +  A++ +  + G++E+A      M  E 
Sbjct: 270 DIAALECGMQLHGRL----IRAGYGVGCFVGN--ALLAMYFKCGNMEDARNAFEEME-ER 322

Query: 209 DVVVWRALLSA 219
           DVV W  +++ 
Sbjct: 323 DVVSWNTMIAG 333


>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
          Length = 593

 Score =  350 bits (898), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 183/417 (43%), Positives = 263/417 (63%), Gaps = 19/417 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++ +VSWN +I  FVR   FD AL  F EM     EPD +T  S+   CA +G+L+  
Sbjct: 189 MSERSLVSWNVVIDAFVRFGEFDAALNLFGEM-QKFFEPDGYTIQSIANACAGMGSLSLG 247

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                      I  + +L+ +L+DMY KCG +++A ++F  + + DV+ WN+MI G + H
Sbjct: 248 -----------IVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTH 296

Query: 121 GLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           G  A A   F  M     ++P++ITF+G+L+AC+H GLV EGR+YFD M + Y I+P+LE
Sbjct: 297 GEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELE 356

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA-CRTFKRLELGEVAIVNISR 238
           HYG +VDLL RAG I+EA  ++++M M PD+V+WR+LL A C+    +EL E     +  
Sbjct: 357 HYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAGVELSEEMARRVLE 416

Query: 239 LMG----GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294
             G    G YVLLS +Y    RW+    VR++M  KGV K  G S +E+ GV H+F AGD
Sbjct: 417 AEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAGD 476

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLP-ATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
            SHP+ + I   L  + +R +  G+ P +++  ++D + + K+ +L  HSE+LA+A+G+L
Sbjct: 477 TSHPQTEEIYSALDVIEERVERVGYSPDSSQAPMVDETIDGKQYSLRLHSERLAIAFGLL 536

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           KT PG  IRI KNLR+C++CH   K+ISR+  R IIVRDRIRFH F+ G CSC DYW
Sbjct: 537 KTKPGMPIRIFKNLRVCNNCHQVTKLISRVFNREIIVRDRIRFHHFKDGACSCMDYW 593



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 98/226 (43%), Gaps = 21/226 (9%)

Query: 9   WNSMIGGFVRNA-RFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           WN++I    R+  R   A+  +  ML    V  DK TF  V+  CA L AL+    +H  
Sbjct: 94  WNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQ 153

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           I++   + +  ++ +L+  Y+ C ++  AK VFD +    +  WN +I      G    A
Sbjct: 154 ILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAA 213

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186
             +F +M+ F   PD  T   +  AC+  G +  G            I   +    ++VD
Sbjct: 214 LNLFGEMQKF-FEPDGYTIQSIANACAGMGSLSLG------------IVNDVLLNTSLVD 260

Query: 187 LLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA 232
           +  + G +E A  L   M  + DV  W +++    T      GEVA
Sbjct: 261 MYCKCGSLELALQLFHRMP-KRDVTSWNSMILGFSTH-----GEVA 300


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  350 bits (898), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 170/413 (41%), Positives = 256/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPD+ VV+W+SM  G+V+N  +++AL  FR+   + ++ D+F  +SVI  CA L A+   
Sbjct: 226 MPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEG 285

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             ++ L+ +     N  ++++LIDMY+KCG I+ + +VF  V++ +V +WNAMISG++ H
Sbjct: 286 KQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRH 345

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
             + +   +F KM+   + P+ +TF+ +L+AC H GLV +G+KYFD M   + + P + H
Sbjct: 346 ARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFH 405

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  MVD L RAG I EAY LI+ +       +W +LL++CRT   LEL EVA   + +I 
Sbjct: 406 YSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIE 465

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G+Y+LLSNMY    +WD    +R+++K+  V+K +GKSW+E+   +H F  G+R+H
Sbjct: 466 PHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNH 525

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+   I   L  ++   +  G+   T+  L  V E  K+  L HHSEKLA   G+L   P
Sbjct: 526 PKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPP 585

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IRI KNLRIC DCHS++K+ S+   R +IVRD  RFH F+ G CSCGD+W
Sbjct: 586 NAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 115/219 (52%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP + +VSWN+MIG   +N   +EAL    +M        +FT +SV+  CA   AL+  
Sbjct: 125 MPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSEC 184

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   I+  ++LN  ++ AL+D+Y+KCG ++ A  VF+++    V  W++M +G   +
Sbjct: 185 QLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQN 244

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            +   A A+F K     +  D      ++ AC+    + EG++  + + S+      +  
Sbjct: 245 EMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQ-MNALLSKSGFCSNIFV 303

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +++D+  + G IEE+Y +   +  + +VV+W A++S 
Sbjct: 304 ASSLIDMYAKCGGIEESYKVFRDVE-KRNVVLWNAMISG 341



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 8/169 (4%)

Query: 51  CARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVW 110
           CA+   L      H  I+   ++ + + S  LI+MYSKCG +  A++VFD +    +  W
Sbjct: 74  CAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSW 133

Query: 111 NAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC-SHCGLVEEGRKYFDHMR 169
           N MI  +  +G   +A  +  +M+         T   +L AC + C L E   +      
Sbjct: 134 NTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSE--CQLLHAFA 191

Query: 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD--VVVWRAL 216
            + ++   +    A++D+  + G +++A  +  SM   PD  VV W ++
Sbjct: 192 IKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESM---PDRSVVTWSSM 237


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  350 bits (898), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 184/416 (44%), Positives = 249/416 (59%), Gaps = 9/416 (2%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARL-----GAL 57
           D+++V +N+++  + R     EAL    EML     PD+ T  S I   A+L     G +
Sbjct: 254 DRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKV 313

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
            H YWVH  I +  I  +  L+ AL+DM+++CG  Q A +VF+ +   DVS W A I  +
Sbjct: 314 CHGYWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTM 373

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           A+ G    A+ +F +M +  V PD + F+ +LTACSH G VE+G   F  M   + I PQ
Sbjct: 374 AMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMED-HGISPQ 432

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
           +EHYG MVDLLGRAG + EA+ LI SM MEP+ VVW +LL+ACR  K +E+   A   I+
Sbjct: 433 IEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERIN 492

Query: 238 RLM---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294
            L     G +VLLSN+Y    +W     VR  +++KGVRK  G S +++ GVIH+F +GD
Sbjct: 493 ELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGD 552

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
            SHPE   I  +L  +  R    G +P    VL+DV E+EKE  L  HSEKLA+A+G++ 
Sbjct: 553 ESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIA 612

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T     IR+ KNLR+C DCHS+ KM S +  R IIVRD  RFH F  GLCSC DYW
Sbjct: 613 TGRSMPIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 668



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 14/232 (6%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D  +   NS+I G+       EA+  +  ML   V P+ +TF  V+ GC ++ A      
Sbjct: 93  DDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQ 152

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  +++  +E +  +   LI  Y++CG +    +VF+ +   +V  W ++I G A    
Sbjct: 153 VHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDR 212

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A ++F   EM N     +    L+     CG ++  ++ FD    R      L  Y 
Sbjct: 213 PKEAVSLF--FEMLN----KVMVNALVDMYMKCGAIDAAKRLFDECVDR-----NLVLYN 261

Query: 183 AMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELGEV 231
            ++    R G   EA  ++  M  +   PD V   + +SA      L  G+V
Sbjct: 262 TILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKV 313



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 95/224 (42%), Gaps = 56/224 (25%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++VVSW S+I G+ R  R  EA+  F EM                            
Sbjct: 192 MSERNVVSWTSLICGYARGDRPKEAVSLFFEM---------------------------- 223

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                        LN ++  AL+DMY KCG I  AK +FD     ++ ++N ++S  A  
Sbjct: 224 -------------LNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQ 270

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GLA +A AI  +M      PD +T L  ++A +   LV+    ++  +   Y +   +E 
Sbjct: 271 GLAREALAILDEMLQQGPRPDRVTMLSAISASAQ--LVD---LFYGKVCHGYWVHTYIEK 325

Query: 181 YG---------AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRA 215
            G         A+VD+  R G  + A  +   MT E DV  W A
Sbjct: 326 NGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMT-ERDVSAWTA 368



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 9/125 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++DV +W + IG        + A   F +ML   V+PD   F  V+  C+  G +   
Sbjct: 358 MTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQG 417

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-----QRNDVSVWNAMIS 115
             + +L+ +  I         ++D+  + G   + +E FD +     + NDV VW ++++
Sbjct: 418 LHIFSLMEDHGISPQIEHYGCMVDLLGRAG---LLREAFDLIKSMPMEPNDV-VWGSLLA 473

Query: 116 GVAIH 120
              +H
Sbjct: 474 ACRVH 478


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  350 bits (898), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 177/415 (42%), Positives = 260/415 (62%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D+V+WN++I   V+     +AL+ FREM  + ++PD  T  S +  C  LG L   
Sbjct: 196 MVERDLVAWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETG 255

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             ++    E+ I+ N I+  A +DM +KCG +  A  +FD + + +V  W+ +I G A++
Sbjct: 256 EEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVN 315

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR--YSIQPQL 178
           G +  A A+F++M+   V P+ +TFL +L+ACSH G V EG +YF+ M      +IQP+ 
Sbjct: 316 GESEKALALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRK 375

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE-VA--IVN 235
           EHY  MVDLLGR+GH+EEAY  I  M +E D  +W ALL AC   + ++LG+ VA  +  
Sbjct: 376 EHYACMVDLLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIKLGQHVADLLFE 435

Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           ++  +   +VLLSNMY    RW   E VR+ MKKKG RK    S +E  G IH    GD+
Sbjct: 436 LAPEIASYHVLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYGGDK 495

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SHP++ +I   L  L+++ KS G++P T+ V  DV +EEKE  L  HSEKLA+A+ ++  
Sbjct: 496 SHPQSASILAKLEDLLKQMKSMGYIPETDSVFHDVEDEEKESTLSTHSEKLAIAFSLING 555

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           SP   IR+ KNLRIC DCH++ K++SR+  R II+RD+ RFH F+ G+CSC D+W
Sbjct: 556 SPKFPIRVMKNLRICGDCHTFCKLVSRITMREIIMRDKNRFHHFKNGICSCKDFW 610



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 109/209 (52%), Gaps = 2/209 (0%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           WN+++ G+V+N   D+A+  + +M    V PD FTF  VI  CA L  L     +H  ++
Sbjct: 103 WNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVIKACAELAELWAGLGMHGHVV 162

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
           +  +E    +   L+ MY K G++  A+ +F ++   D+  WNA+I+     G ++ A  
Sbjct: 163 KHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLVAWNALIAVCVQTGFSSKALQ 222

Query: 129 IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLL 188
            F +M M  + PDS+T +  L+AC H G +E G + ++  R    I   +  + A +D+ 
Sbjct: 223 SFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFAREE-GIDSNIIVHNARLDMC 281

Query: 189 GRAGHIEEAYGLITSMTMEPDVVVWRALL 217
            + G +++A  L   M  + +V+ W  ++
Sbjct: 282 AKCGDMDKAMNLFDEMP-QRNVISWSTVI 309



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 86/198 (43%), Gaps = 28/198 (14%)

Query: 90  GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
           G +  A+++FD + +    +WN ++ G   +G+   A +++ KM    V PD  TF  ++
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 150 TACS-----------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAY 198
            AC+           H  +V+ G ++   +R+   I         M    G  G  E  +
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMI---------MYVKFGELGCAEFLF 193

Query: 199 GLITSMTMEPDVVVWRALLSAC--RTFKRLELGEVAIVNISRLMGGDYVLLSNMYC--YL 254
           G +    +E D+V W AL++ C    F    L     + ++ +      ++S +    +L
Sbjct: 194 GSM----VERDLVAWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHL 249

Query: 255 KRWDTAENVREIMKKKGV 272
              +T E + E  +++G+
Sbjct: 250 GCLETGEEIYEFAREEGI 267


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  350 bits (898), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 173/414 (41%), Positives = 249/414 (60%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++DVV+W +MI G+ +N R DEA+  FR M++   EP+ +T A+V+  CA L  L++ 
Sbjct: 285 MNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYG 344

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAI 119
             +H   I   +E +  +S A+I MY++ G    A+ +FD V  R +   W +MI  +A 
Sbjct: 345 KQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQ 404

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +A  +F +M    V PD IT++G+L+ACSH G V EG++Y+D +++ + I P++ 
Sbjct: 405 HGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMS 464

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HY  MVDLL RAG   EA   I  M +EPD + W +LLSACR  K  EL E+A   +++I
Sbjct: 465 HYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSI 524

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G Y  ++N+Y    RW  A  + +  K+K VRK  G SW  +   IH F A D  
Sbjct: 525 DPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVV 584

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+  A+  +   + +  K  GF+P  + VL DV +E KE  L  HSEKLA+A+G++ T 
Sbjct: 585 HPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTP 644

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             T +R+ KNLR+C+DCH+ IK IS++  R IIVRD  RFH F  GLCSC DYW
Sbjct: 645 EKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 121/290 (41%), Gaps = 72/290 (24%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           MPD+ +VSWN+MI G+ +N    +AL+ F  ML  S + PD+FT  SV+  CA LG +  
Sbjct: 150 MPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRI 209

Query: 60  AYWVHNLIIEKKI---------------------------------ELNFILSAALIDMY 86
              VH  I+  ++                                 +LN I   AL++ Y
Sbjct: 210 GKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGY 269

Query: 87  SKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFL 146
            K G ++ A+E+F  +   DV  W AMI G   +G   +A  +F  M      P+S T  
Sbjct: 270 VKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLA 329

Query: 147 GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH-------------------------- 180
            +L+ C+    ++ G++   H R+  S+  Q                             
Sbjct: 330 AVLSVCASLACLDYGKQI--HCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVC 387

Query: 181 -------YGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSAC 220
                  + +M+  L + G  EEA GL   M    +EPD + +  +LSAC
Sbjct: 388 WRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSAC 437



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 120/251 (47%), Gaps = 36/251 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D VSW  M+ G  R  RF EA++   +M +    P +FT  +V+  CA   A    
Sbjct: 18  MPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVG 77

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS----- 115
             VH+ +++  +     ++ ++++MY KCG  + A  VF+ +    VS WNAM+S     
Sbjct: 78  RKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHL 137

Query: 116 --------------------------GVAIHGLAADASAIFTKM-EMFNVLPDSITFLGL 148
                                     G   +GL A A  +F++M    ++ PD  T   +
Sbjct: 138 GRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSV 197

Query: 149 LTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI-TSMTM 206
           L+AC++ G V  G++   + +R+  +   Q+ +  A++    ++G +E A  ++  SM  
Sbjct: 198 LSACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALISTYAKSGSVENARRIMDQSMET 255

Query: 207 EPDVVVWRALL 217
           + +V+ + ALL
Sbjct: 256 DLNVISFTALL 266



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 2/146 (1%)

Query: 85  MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSIT 144
           M++K G++  A+ VF  +   D   W  M+ G+   G   +A      M      P   T
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 145 FLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
              +L++C+       GRK    +  +  +   +    +++++ G+ G  E A  +   M
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFV-VKLGLGSCVPVANSVLNMYGKCGDSETATTVFERM 119

Query: 205 TMEPDVVVWRALLSACRTFKRLELGE 230
            +   V  W A++S      R++L E
Sbjct: 120 PVR-SVSSWNAMVSLNTHLGRMDLAE 144


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  350 bits (898), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 180/413 (43%), Positives = 242/413 (58%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD VSW +M+  + +    +E L+ F+EM       ++  FA V+  CA + AL   
Sbjct: 412 MPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECG 471

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ +I+    +   +  AL+ MY KCG ++ A   F+ ++  DV  WN MI+G A H
Sbjct: 472 MQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARH 531

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F  M   +  PD IT +G+L ACSH GLVE+G  YF  M   + +  + EH
Sbjct: 532 GFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEH 591

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  M+DLLGRAG ++EA  L+  M  EPD  +W ALL A R  +  ELG  A   I  L 
Sbjct: 592 YTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELE 651

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    +W   + +R IM ++GV+K  G SW+E+   +H F  GD  H
Sbjct: 652 PENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVH 711

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE + I   L  L  R K  G++ AT++VL DV EEEKE  L +HSEKLA+AYGILK  P
Sbjct: 712 PEREDIYAFLEDLDIRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILKIPP 771

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH+  K IS +  R+II+RD  RFH F  G CSCGDYW
Sbjct: 772 GRPIRVIKNLRVCRDCHTAFKCISAIEGRLIILRDSNRFHHFRDGSCSCGDYW 824



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 125/255 (49%), Gaps = 24/255 (9%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P+KD VSWN M+  +VRN R  EA    RE+  S+ E D  ++ +++ G  +   +  A 
Sbjct: 227 PEKDAVSWNGMLAAYVRNGRIQEA----RELFDSRTEWDAISWNALMAGYVQRSQIEEAQ 282

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            + N + ++ +    +    ++  Y++ G +  A+ +FD     DV  W A++SG A +G
Sbjct: 283 KMFNKMPQRDV----VSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNG 338

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
           +  +A  +F  M   N    ++++  ++ A     ++EE ++ FD M  R      +  +
Sbjct: 339 MLEEAKRVFDAMPDKN----AVSWNAMMAAYVQRRMMEEAKELFDAMPCR-----NVASW 389

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
             M+    +AG ++EA   I  M  + D V W A+L+A   + ++   E   + + + MG
Sbjct: 390 NTMLTGYAQAGMLDEARA-IFGMMPQKDAVSWAAMLAA---YSQIGFSE-ETLQLFKEMG 444

Query: 242 --GDYVLLSNMYCYL 254
             G++V  S   C L
Sbjct: 445 RCGEWVNRSAFACVL 459



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 16/170 (9%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEP--DKFTFASVIYGCARLGALN 58
           MP +DVVSWN+M+ G+ R     EA R F       V P  D FT+ +++ G A+ G L 
Sbjct: 288 MPQRDVVSWNTMVSGYARRGDMAEARRLF------DVAPIRDVFTWTAIVSGYAQNGMLE 341

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
            A  V + + +K    N +   A++  Y +   ++ AKE+FD +   +V+ WN M++G A
Sbjct: 342 EAKRVFDAMPDK----NAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYA 397

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM 168
             G+  +A AIF  M       D++++  +L A S  G  EE  + F  M
Sbjct: 398 QAGMLDEARAIFGMMPQ----KDAVSWAAMLAAYSQIGFSEETLQLFKEM 443



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 18/219 (8%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +   ++N+M+ G+  N R  +AL FFR    S   PD F++ ++++    LG  +  
Sbjct: 133 MPRRSTSTYNTMLAGYAANGRLPQALSFFR----SIPRPDSFSYNTLLHA---LGVSSSL 185

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V  L  E  ++ + +    +I  ++  G + +A+  FD     D   WN M++    +
Sbjct: 186 ADVRALFDEMPVK-DSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRN 244

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F     +    D+I++  L+        +EE +K F+ M  R  +      
Sbjct: 245 GRIQEARELFDSRTEW----DAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVS----- 295

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +  MV    R G + EA  L     +  DV  W A++S 
Sbjct: 296 WNTMVSGYARRGDMAEARRLFDVAPIR-DVFTWTAIVSG 333



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 37/225 (16%)

Query: 68  IEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADAS 127
           I  K ++  I     I  + + G++  A+ +F  + R   S +N M++G A +G    A 
Sbjct: 99  ITGKPDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQAL 158

Query: 128 AIFTKME-------------------------MFNVLP--DSITFLGLLTACSHCGLVEE 160
           + F  +                          +F+ +P  DS+++  ++++ ++ GLV  
Sbjct: 159 SFFRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSL 218

Query: 161 GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
            R YFD    + ++      +  M+    R G I+EA  L  S T E D + W AL++  
Sbjct: 219 ARHYFDLAPEKDAVS-----WNGMLAAYVRNGRIQEARELFDSRT-EWDAISWNALMAG- 271

Query: 221 RTFKRLELGEVAIVNISRLMGGDYVLLSNMYC-YLKRWDTAENVR 264
              +R ++ E   +  +++   D V  + M   Y +R D AE  R
Sbjct: 272 -YVQRSQIEEAQKM-FNKMPQRDVVSWNTMVSGYARRGDMAEARR 314


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  350 bits (898), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 178/413 (43%), Positives = 241/413 (58%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D VSW ++I G+ ++  ++EAL  F E+       ++ TF   +  CA + AL   
Sbjct: 354 MPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELG 413

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++        +  AL+ MY KCG I  A + F+ ++  DV  WN M++G A H
Sbjct: 414 KQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARH 473

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F  M+   V PD IT +G+L+ACSH GL++ G +YF  M   Y + P  +H
Sbjct: 474 GFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKH 533

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  M+DLLGRAG +EEA  LI +M  +P    W ALL A R     ELGE A   +  + 
Sbjct: 534 YTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKME 593

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    RW  A+ +R  M+  GV+K  G SW+E+   IH F  GD SH
Sbjct: 594 PQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSH 653

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE + I   L  L  + + EG++  T+LVL DV EEEKE  L +HSEKLA+A+GIL    
Sbjct: 654 PEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPG 713

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCHS IK IS+++ R+II+RD  RFH F  G CSCGDYW
Sbjct: 714 GRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 89/258 (34%), Positives = 117/258 (45%), Gaps = 54/258 (20%)

Query: 154 HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVW 213
           + GL++ G +YF  M   YS+ P  +HY  M+DLLGR   +EE                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEEG---------------- 819

Query: 214 RALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVR 273
            ALL A R     ELGE A     + MG     +S M             R++    GV+
Sbjct: 820 -ALLGASRIHGNTELGEKAAQMFFK-MGPQNSGISKM-------------RDV----GVQ 860

Query: 274 KSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEE 333
           K  G SW E+   IH F  G     E + I              GFL   +L  M   EE
Sbjct: 861 KVPGYSWFEVQNKIHTFSVGLFLSRERENI--------------GFLEELDLK-MREREE 905

Query: 334 EKEGNLYHHSEKLALAYGILKTSPGTEIRI-SKNLRICHDCHSWIKMISRLLRRVIIVRD 392
           EKE  L + SE LA A GIL    G   R+  K + +C DC S IK +S+++ R+I +RD
Sbjct: 906 EKERTLKYLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLITLRD 965

Query: 393 RIRFHRFEGGLCSCGDYW 410
               HRF   +CSCG+YW
Sbjct: 966 S---HRFNESICSCGEYW 980



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 133/334 (39%), Gaps = 72/334 (21%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM---------------------------L 33
           MP+KDVVSWNS++ G+ +N   DEA   F  M                            
Sbjct: 137 MPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLF 196

Query: 34  SSKVEPDKFTFASVIYGCARLGALNHAYWVHN-LIIEKKIELNFILSAALIDMYSKCGKI 92
            SK + D  ++  ++ G  R   L  A W+ + + +   I  N ++S      Y++ G +
Sbjct: 197 ESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISG-----YAQGGGL 251

Query: 93  QMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM------------------- 133
             A+ +FD     DV  W AM+SG   +G+  +A   F +M                   
Sbjct: 252 SQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTK 311

Query: 134 ------EMFNVLP--DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
                 E+F  +P  +  ++  ++T     G + + RK+FD M  R  +      + A++
Sbjct: 312 KMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVS-----WAAII 366

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVV---VWRALLSACRTFKRLELGEVAIVNISRLMGG 242
               ++GH EEA  +   +  + + +    +   LS C     LELG+       ++  G
Sbjct: 367 AGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYG 426

Query: 243 DYVLLSN----MYCYLKRWDTAENVREIMKKKGV 272
               + N    MY      D A +  E +++K V
Sbjct: 427 TGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDV 460



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 112/228 (49%), Gaps = 18/228 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D+ SWN M+ G+VRN R  +A R F  M     E D  ++ S++ G A+ G ++ A
Sbjct: 106 MPERDLFSWNVMLTGYVRNCRLGDARRLFDLM----PEKDVVSWNSLLSGYAQNGYVDEA 161

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V + + EK    N I    L+  Y   G+I+ A  +F++    D+  WN ++ G    
Sbjct: 162 REVFDNMPEK----NSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRK 217

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               DA  +F KM     + D+I++  +++  +  G + + R+ FD   +R      +  
Sbjct: 218 KKLGDARWLFDKMP----VRDAISWNTMISGYAQGGGLSQARRLFDESPTR-----DVFT 268

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLEL 228
           + AMV    + G ++EA      M  E + V + A+++     K++++
Sbjct: 269 WTAMVSGYVQNGMLDEAKTFFDEMP-EKNEVSYNAMIAGYVQTKKMDI 315



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 103/219 (47%), Gaps = 12/219 (5%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P +DV +W +M+ G+V+N   DEA  FF EM     E ++ ++ ++I G  +   ++   
Sbjct: 262 PTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM----PEKNEVSYNAMIAGYVQTKKMD--- 314

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +   + E     N      +I  Y + G I  A++ FD + + D   W A+I+G A  G
Sbjct: 315 -IARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSG 373

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLEH 180
              +A  +F +++      +  TF   L+ C+    +E G++ +   ++  Y     + +
Sbjct: 374 HYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGN 433

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++ +  + G I+EA      +  E DVV W  +L+ 
Sbjct: 434 --ALLAMYFKCGSIDEANDTFEGIE-EKDVVSWNTMLAG 469



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 12/164 (7%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D D++ WN  I   +RN   D AL  F  M          ++ ++I G  R    N A  
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTM----PRRSSVSYNAMISGYLRNSKFNLARN 101

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           + + + E+ +   F  +  L      C ++  A+ +FD +   DV  WN+++SG A +G 
Sbjct: 102 LFDQMPERDL---FSWNVMLTGYVRNC-RLGDARRLFDLMPEKDVVSWNSLLSGYAQNGY 157

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD 166
             +A  +F  M   N    SI++ GLL A  H G +EE    F+
Sbjct: 158 VDEAREVFDNMPEKN----SISWNGLLAAYVHNGRIEEACLLFE 197


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  350 bits (898), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 178/413 (43%), Positives = 241/413 (58%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D VSW ++I G+ ++  ++EAL  F E+       ++ TF   +  CA + AL   
Sbjct: 354 MPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELG 413

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++        +  AL+ MY KCG I  A + F+ ++  DV  WN M++G A H
Sbjct: 414 KQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARH 473

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F  M+   V PD IT +G+L+ACSH GL++ G +YF  M   Y + P  +H
Sbjct: 474 GFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKH 533

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  M+DLLGRAG +EEA  LI +M  +P    W ALL A R     ELGE A   +  + 
Sbjct: 534 YTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKME 593

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    RW  A+ +R  M+  GV+K  G SW+E+   IH F  GD SH
Sbjct: 594 PQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSH 653

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE + I   L  L  + + EG++  T+LVL DV EEEKE  L +HSEKLA+A+GIL    
Sbjct: 654 PEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPG 713

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCHS IK IS+++ R+II+RD  RFH F  G CSCGDYW
Sbjct: 714 GRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 133/334 (39%), Gaps = 72/334 (21%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM---------------------------L 33
           MP+KDVVSWNS++ G+ +N   DEA   F  M                            
Sbjct: 137 MPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLF 196

Query: 34  SSKVEPDKFTFASVIYGCARLGALNHAYWVHN-LIIEKKIELNFILSAALIDMYSKCGKI 92
            SK + D  ++  ++ G  R   L  A W+ + + +   I  N ++S      Y++ G +
Sbjct: 197 ESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISG-----YAQGGGL 251

Query: 93  QMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM------------------- 133
             A+ +FD     DV  W AM+SG   +G+  +A   F +M                   
Sbjct: 252 SQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTK 311

Query: 134 ------EMFNVLP--DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
                 E+F  +P  +  ++  ++T     G + + RK+FD M  R  +      + A++
Sbjct: 312 KMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVS-----WAAII 366

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVV---VWRALLSACRTFKRLELGEVAIVNISRLMGG 242
               ++GH EEA  +   +  + + +    +   LS C     LELG+       ++  G
Sbjct: 367 AGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYG 426

Query: 243 DYVLLSN----MYCYLKRWDTAENVREIMKKKGV 272
               + N    MY      D A +  E +++K V
Sbjct: 427 TGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDV 460



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 112/228 (49%), Gaps = 18/228 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D+ SWN M+ G+VRN R  +A R F  M     E D  ++ S++ G A+ G ++ A
Sbjct: 106 MPERDLFSWNVMLTGYVRNCRLGDARRLFDLM----PEKDVVSWNSLLSGYAQNGYVDEA 161

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V + + EK    N I    L+  Y   G+I+ A  +F++    D+  WN ++ G    
Sbjct: 162 REVFDNMPEK----NSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRK 217

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               DA  +F KM     + D+I++  +++  +  G + + R+ FD   +R      +  
Sbjct: 218 KKLGDARWLFDKMP----VRDAISWNTMISGYAQGGGLSQARRLFDESPTR-----DVFT 268

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLEL 228
           + AMV    + G ++EA      M  E + V + A+++     K++++
Sbjct: 269 WTAMVSGYVQNGMLDEAKTFFDEMP-EKNEVSYNAMIAGYVQTKKMDI 315



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 108/234 (46%), Gaps = 15/234 (6%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P +DV +W +M+ G+V+N   DEA  FF EM     E ++ ++ ++I G  +   ++   
Sbjct: 262 PTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM----PEKNEVSYNAMIAGYVQTKKMD--- 314

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +   + E     N      +I  Y + G I  A++ FD + + D   W A+I+G A  G
Sbjct: 315 -IARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSG 373

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLEH 180
              +A  +F +++      +  TF   L+ C+    +E G++ +   ++  Y     + +
Sbjct: 374 HYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGN 433

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIV 234
             A++ +  + G I+EA      +  E DVV W  +L+    + R   G  A+ 
Sbjct: 434 --ALLAMYFKCGSIDEANDTFEGIE-EKDVVSWNTMLAG---YARHGFGRQALT 481



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 12/158 (7%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D D++ WN  I   +RN   D AL  F  M          ++ ++I G  R    N A  
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTM----PRRSSVSYNAMISGYLRNSKFNLARN 101

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           + + + E+ +   F  +  L      C ++  A+ +FD +   DV  WN+++SG A +G 
Sbjct: 102 LFDQMPERDL---FSWNVMLTGYVRNC-RLGDARRLFDLMPEKDVVSWNSLLSGYAQNGY 157

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE 160
             +A  +F  M   N    SI++ GLL A  H G +EE
Sbjct: 158 VDEAREVFDNMPEKN----SISWNGLLAAYVHNGRIEE 191


>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
 gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  350 bits (897), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 185/425 (43%), Positives = 262/425 (61%), Gaps = 19/425 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP + +VSWN+MI  FV    F+ AL+ F +      EPD +T  SVI  CA L AL+  
Sbjct: 187 MPQRSLVSWNAMIDAFVLFGEFETALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLG 246

Query: 61  YWVHNLIIEK---KIELNFIL-SAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
            W H  ++      +  + +L + +L+DMY KCG + +A ++F+ +Q++DV+ WN+MI G
Sbjct: 247 MWAHAFLLRNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSWNSMILG 306

Query: 117 VAIHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
            A+HG    A   F +M  +   +P+SITF+G+L+AC+H  +V EGRKYFD M + Y I+
Sbjct: 307 FAMHGKGELALECFERMIRISRFVPNSITFVGVLSACNHRYMVNEGRKYFDMMVNEYKIE 366

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL-SACRTFKRLELGEVAIV 234
           PQLEHYG +VD+L RAG I+EA  L+ SM M+PDVV+WR+LL S C+    +EL E    
Sbjct: 367 PQLEHYGCLVDILARAGLIDEALELVASMPMKPDVVIWRSLLDSCCKKNASVELSE---- 422

Query: 235 NISRLM--------GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGV 286
           NI+R +         G YVLLS +Y    RW+    VR++M   G+ K  G S +E+ GV
Sbjct: 423 NIARQILESEEADSSGVYVLLSRVYASASRWNDVGLVRKLMTNNGILKEPGCSLIEVDGV 482

Query: 287 IHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPA-TELVLMDVSEEEKEGNLYHHSEK 345
            H+F AGD SHP+ + I ++L  + +R  S G+ P  ++  ++D     K  +L  HSE+
Sbjct: 483 THEFFAGDTSHPQTKEIYQVLNVVEERIDSTGYKPDYSQAPMVDELNTSKRDSLRLHSER 542

Query: 346 LALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCS 405
           LA+A G+L   PG  IRI KNLR+C DCH    +IS +    IIVRDR+RFH F+ G CS
Sbjct: 543 LAIALGLLNLKPGMPIRIFKNLRVCDDCHKVTGLISEIFNVEIIVRDRVRFHHFKDGSCS 602

Query: 406 CGDYW 410
           C DYW
Sbjct: 603 CMDYW 607



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 103/239 (43%), Gaps = 11/239 (4%)

Query: 9   WNSMIGGFVRNARFD---EALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           WN +I    ++       EA+  +  ML  S   PD  TF  V+  CA L AL      H
Sbjct: 90  WNILIRACAQSQSVHLKREAILLYNTMLQRSSPFPDNHTFPFVLKACAYLFALFEGKQAH 149

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             +++   + +  ++ +LI  Y+ CG ++ AK VFD + +  +  WNAMI    + G   
Sbjct: 150 AHLLKLGFQSDVYINNSLIHFYASCGSLESAKNVFDKMPQRSLVSWNAMIDAFVLFGEFE 209

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY--- 181
            A  +F + +     PD  T   ++ AC+    +  G      +     +    +H    
Sbjct: 210 TALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAHAFLLRNCGVSVARDHVLVN 269

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
            +++D+  + G ++ A  +   M  + DV  W +++     F     GE+A+    R++
Sbjct: 270 NSLLDMYCKCGSLDIATQIFEGMQ-KHDVTSWNSMILG---FAMHGKGELALECFERMI 324



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 91/238 (38%), Gaps = 57/238 (23%)

Query: 86  YSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA----IHGLAADASAIF-TKMEMFNVLP 140
           +S    +  A  VFD V   +  +WN +I   A    +H L  +A  ++ T ++  +  P
Sbjct: 66  FSSLHDLNYAYRVFDQVDNPNSFMWNILIRACAQSQSVH-LKREAILLYNTMLQRSSPFP 124

Query: 141 DSITFLGLLTACSH-----------------------------------CGLVEEGRKYF 165
           D+ TF  +L AC++                                   CG +E  +  F
Sbjct: 125 DNHTFPFVLKACAYLFALFEGKQAHAHLLKLGFQSDVYINNSLIHFYASCGSLESAKNVF 184

Query: 166 DHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEA---YGLITSMTMEPDVVVWRALLSACRT 222
           D M  R      L  + AM+D     G  E A   +        EPD    +++++AC  
Sbjct: 185 DKMPQR-----SLVSWNAMIDAFVLFGEFETALQLFVQFQQQFFEPDGYTIQSVINACAG 239

Query: 223 FKRLELGEVA----IVNISRLMGGDYVLLSN----MYCYLKRWDTAENVREIMKKKGV 272
              L LG  A    + N    +  D+VL++N    MYC     D A  + E M+K  V
Sbjct: 240 LCALSLGMWAHAFLLRNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDV 297


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  350 bits (897), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 169/411 (41%), Positives = 246/411 (59%), Gaps = 4/411 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD+VSW SMI     N R + A+  F EM  + ++PD     S++   A L +L     V
Sbjct: 531 KDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQV 590

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I +   +   + ++L+DMYS CG +  A  VF+  +  DV +W AMI+   +HG  
Sbjct: 591 HGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHG 650

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  +F +M    + PD ++FL LL ACSH  LVEEG+ Y D M S+Y ++P  EHY  
Sbjct: 651 KQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYAC 710

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---M 240
           +VD+LGR+G  EEAY  I +M M+P   VW ALL ACR  +   L  VA   +  L    
Sbjct: 711 VVDILGRSGQTEEAYEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDN 770

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G+Y+L+SN++  + +W+ A+  R  M ++G+RK+   SW+E+   IH F +GD  H ++
Sbjct: 771 PGNYILVSNVFAEMGKWNNAKETRTRMAERGLRKNPACSWIEIGNNIHTFTSGDYCHRDS 830

Query: 301 QAIDKILGSLIQRTKSE-GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           +AI   L  + +  + E G++  T  VL D SEEEK   L+ HSE++A+A+G++ T PG 
Sbjct: 831 EAIHLKLSEITEMLRREGGYVEDTRFVLHDTSEEEKIDMLHKHSERIAIAFGLISTRPGM 890

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI+KNLR+C DCH + K++S+L  R I+VRD  RFH F GG CSC D+W
Sbjct: 891 PIRIAKNLRVCGDCHEFTKLVSKLFERDIVVRDANRFHHFSGGSCSCEDFW 941



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 117/226 (51%), Gaps = 14/226 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE---PDKFTFASVIYGCARLGAL 57
           MP + V SWN+++G ++ +    EA+R +  M +S      PD  T ASV+  C   G  
Sbjct: 121 MPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDG 180

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN--DVSVWNAMIS 115
                VH L ++  ++ + +++ ALI MY+KCG +  A  VF+ +Q++  DV+ WN+++S
Sbjct: 181 RCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVS 240

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM---RSRY 172
           G   +G   +A A+F  M+      +S T + +L  C+  GL+  GR+    +    S  
Sbjct: 241 GCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSEL 300

Query: 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
           +IQ       A++ +  + G ++ A  +   +  E D + W ++LS
Sbjct: 301 NIQCN-----ALLVMYAKYGRVDSALRVFGQIA-EKDYISWNSMLS 340



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 124/270 (45%), Gaps = 20/270 (7%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +DV SWNS++ G V+N R  EAL  FR M S+    + +T  +V+  CA LG L+    +
Sbjct: 230 RDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGREL 289

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +++   ELN I   AL+ MY+K G++  A  VF  +   D   WN+M+S    +   
Sbjct: 290 HAALLKCGSELN-IQCNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFY 348

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
           A+A   F +M      PD    + L +A  H   +  GR+ F     +  +   L+    
Sbjct: 349 AEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGRE-FHAYAIKQRLHTDLQVGNT 407

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKR--------LELGEVAIVN 235
           ++D+  + G IE +  +  SM +  D + W  +L+      R        LEL +  I+ 
Sbjct: 408 LMDMYIKCGSIECSAKVFESMGIR-DHISWTTILACFAQSSRHSEALEMILELQKEGIMV 466

Query: 236 ISRLMGG---------DYVLLSNMYCYLKR 256
            S ++G             LL  ++CY  R
Sbjct: 467 DSMMIGSILETCCGLKSISLLKQVHCYAIR 496



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 109/227 (48%), Gaps = 3/227 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + +KD +SWNSM+  +V+N+ + EA+ FF EML    +PD     S+      L  LN+ 
Sbjct: 327 IAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNG 386

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H   I++++  +  +   L+DMY KCG I+ + +VF+++   D   W  +++  A  
Sbjct: 387 REFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQS 446

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
              ++A  +  +++   ++ DS+    +L  C  CGL         H  +  +    L  
Sbjct: 447 SRHSEALEMILELQKEGIMVDSMMIGSILETC--CGLKSISLLKQVHCYAIRNGLLDLIL 504

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
              ++D+ G  G  + +  L   +  + D+V W ++++ C    RL 
Sbjct: 505 ENRLIDIYGECGEFDHSLNLFQRVE-KKDIVSWTSMINCCTNNGRLN 550



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 110/220 (50%), Gaps = 5/220 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D +SW +++  F +++R  EAL    E+    +  D     S++  C  L +++  
Sbjct: 428 MGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLL 487

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   I   + L+ IL   LID+Y +CG+   +  +F  V++ D+  W +MI+    +
Sbjct: 488 KQVHCYAIRNGL-LDLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNN 546

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLE 179
           G    A  +FT+M+  N+ PDS+  + +L A +    + +G++    + R  + I+  + 
Sbjct: 547 GRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPV- 605

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              ++VD+    G +  A  +      + DVV+W A+++A
Sbjct: 606 -VSSLVDMYSGCGSMNYAIRVFERAKCK-DVVLWTAMINA 643



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 13/162 (8%)

Query: 77  ILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMF 136
            L+  L+ MY +CG++  A+ +F+ +    V  WNA++      G A +A  ++  M   
Sbjct: 96  FLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRAS 155

Query: 137 NV---LPDSITFLGLLTACSHCGLVEEGR--KYFDHMRSRYSIQPQLEHYGAMVDLLGRA 191
                 PD  T   +L A   CG   +GR       +  +  +        A++ +  + 
Sbjct: 156 AAPGSAPDGCTLASVLKA---CGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKC 212

Query: 192 GHIEEAYGLITSMTMEP-DVVVWRALLSAC----RTFKRLEL 228
           G ++ A  +   +  +  DV  W +++S C    RT + L L
Sbjct: 213 GLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALAL 254


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  350 bits (897), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 179/411 (43%), Positives = 253/411 (61%), Gaps = 3/411 (0%)

Query: 3    DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
            D + VSWN++I G+ ++   + AL  FREM ++ V   + T++SV+  CA   ++NH   
Sbjct: 796  DVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQ 855

Query: 63   VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            VH LI +     + I+S +LID Y+KCG I+ A+E+F+T++  D+  WNA+ISG A+HG 
Sbjct: 856  VHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQ 915

Query: 123  AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
            AA A  +F  M   ++  + ITF+ LL+ C   GLV +G   FD MR  + I+P +EHY 
Sbjct: 916  AAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYT 975

Query: 183  AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
             +V LLGRAG + +A   I  +   P  +VWRALLS+C   K +ELG  +   +  +   
Sbjct: 976  CIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQ 1035

Query: 243  D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
            D   YVLLSNMY      D     R+ M+  GVRK  G SW+E+ G +H F  G   HP 
Sbjct: 1036 DETTYVLLSNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWVEIKGEVHAFSVGSEDHPC 1095

Query: 300  AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
             + I+ +L  L  +   EG++P T+ VL D+ EE+K   L+ HSE+LALAYG++ T PG 
Sbjct: 1096 MRVINAMLEWLNLKAIREGYVPDTDEVLHDLEEEQKVRMLWVHSERLALAYGLVMTPPGH 1155

Query: 360  EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             IRI KNLR C DCH+  K+IS+++++ IIVRD  RFH FE G CSCGDYW
Sbjct: 1156 PIRIMKNLRSCLDCHAIFKVISKIVKQEIIVRDINRFHHFEEGTCSCGDYW 1206



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 112/230 (48%), Gaps = 5/230 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD V+W +M+  +  N   +  L+ F +M  +  + + F   SV+     L ++     +
Sbjct: 595 KDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGI 654

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   ++   +    +  AL+DMY+KCG I+ A+  F+ V  +DV +W+ MIS  A     
Sbjct: 655 HACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQN 714

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  +F +M   +V P+  +   +L AC++  L++ G++  +H   +   + +L    A
Sbjct: 715 EQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHA-IKIGHESELFVGNA 773

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI 233
           ++DL  +   +E +  + +S+  + + V W  ++     + +   GE A+
Sbjct: 774 LIDLYAKCSDMESSLEIFSSLR-DVNEVSWNTIIVG---YSKSGFGEAAL 819



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 104/219 (47%), Gaps = 4/219 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P++++VS+ +++ G      F+EA   F+ +     E ++F   +V+     +  L  A
Sbjct: 491 LPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLA 550

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           + VH    +   + N  + +ALID YS CG +  A+ VFD +   D   W AM+S  + +
Sbjct: 551 WGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSEN 610

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +   IF+KM +     +      +L A      V  G+    H  S  ++     H
Sbjct: 611 DCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGI--HACSVKTLYDTERH 668

Query: 181 -YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
            YGA++D+  + G+IE+A  L   M    DV++W  ++S
Sbjct: 669 VYGALLDMYAKCGNIEDAR-LAFEMVTNDDVILWSLMIS 706



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 78/190 (41%), Gaps = 41/190 (21%)

Query: 18  RNARFDEALRFFREMLSSKVEP----DKFTFASVIYGCARLGALNHAYWVHNLIIEKK-- 71
           R+   + AL++  + L+S   P    D + +A ++ GC   G       VH  ++     
Sbjct: 401 RDLAANAALQWLEDELTSLAFPWPGVDSYAYARLLQGCVARGDARGGRAVHGHVVRSGGL 460

Query: 72  IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFT 131
             L+   +  L++MY+K G    A  VFD +   ++  +  ++ G A+ G   +ASA+F 
Sbjct: 461 ARLDLFCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQ 520

Query: 132 KME----------MFNVLP-----------------------DSITFLG--LLTACSHCG 156
           ++           +  VL                        D   F+G  L+ A S CG
Sbjct: 521 RLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCG 580

Query: 157 LVEEGRKYFD 166
           +V + R+ FD
Sbjct: 581 VVSDARRVFD 590


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  350 bits (897), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 173/414 (41%), Positives = 249/414 (60%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++DVV+W +MI G+ +N R DEA+  FR M++   EP+ +T A+V+  CA L  L++ 
Sbjct: 391 MNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYG 450

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAI 119
             +H   I   +E +  +S A+I MY++ G    A+ +FD V  R +   W +MI  +A 
Sbjct: 451 KQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQ 510

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +A  +F +M    V PD IT++G+L+ACSH G V EG++Y+D +++ + I P++ 
Sbjct: 511 HGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMS 570

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HY  MVDLL RAG   EA   I  M +EPD + W +LLSACR  K  EL E+A   +++I
Sbjct: 571 HYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSI 630

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G Y  ++N+Y    RW  A  + +  K+K VRK  G SW  +   IH F A D  
Sbjct: 631 DPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVV 690

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+  A+  +   + +  K  GF+P  + VL DV +E KE  L  HSEKLA+A+G++ T 
Sbjct: 691 HPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTP 750

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             T +R+ KNLR+C+DCH+ IK IS++  R IIVRD  RFH F  GLCSC DYW
Sbjct: 751 EKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 121/290 (41%), Gaps = 72/290 (24%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           MPD+ +VSWN+MI G+ +N    +AL+ F  ML  S + PD+FT  SV+  CA LG +  
Sbjct: 256 MPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRI 315

Query: 60  AYWVHNLIIEKKI---------------------------------ELNFILSAALIDMY 86
              VH  I+  ++                                 +LN I   AL++ Y
Sbjct: 316 GKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGY 375

Query: 87  SKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFL 146
            K G ++ A+E+F  +   DV  W AMI G   +G   +A  +F  M      P+S T  
Sbjct: 376 VKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLA 435

Query: 147 GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH-------------------------- 180
            +L+ C+    ++ G++   H R+  S+  Q                             
Sbjct: 436 AVLSVCASLACLDYGKQI--HCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVC 493

Query: 181 -------YGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSAC 220
                  + +M+  L + G  EEA GL   M    +EPD + +  +LSAC
Sbjct: 494 WRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSAC 543



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 123/251 (49%), Gaps = 36/251 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D VSW  M+ G  R  RF EA++   +M +    P +FT  +V+  CA   A    
Sbjct: 124 MPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVG 183

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKC------------------------------- 89
             VH+ +++  +     ++ ++++MY KC                               
Sbjct: 184 RKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHL 243

Query: 90  GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM-EMFNVLPDSITFLGL 148
           G++ +A+ +F+++    +  WNAMI+G   +GL A A  +F++M    ++ PD  T   +
Sbjct: 244 GRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSV 303

Query: 149 LTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI-TSMTM 206
           L+AC++ G V  G++   + +R+  +   Q+ +  A++    ++G +E A  ++  SM  
Sbjct: 304 LSACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALISTYAKSGSVENARRIMDQSMET 361

Query: 207 EPDVVVWRALL 217
           + +V+ + ALL
Sbjct: 362 DLNVISFTALL 372



 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 2/150 (1%)

Query: 81  ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP 140
           +L+ M++K G++  A+ VF  +   D   W  M+ G+   G   +A      M      P
Sbjct: 103 SLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTP 162

Query: 141 DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL 200
              T   +L++C+       GRK    +  +  +   +    +++++ G+ G  E A  +
Sbjct: 163 TQFTLTNVLSSCAVTQAGAVGRKVHSFV-VKLGLGSCVPVANSVLNMYGKCGDSETATTV 221

Query: 201 ITSMTMEPDVVVWRALLSACRTFKRLELGE 230
              M +   V  W A++S      R++L E
Sbjct: 222 FERMPVR-SVSSWNAMVSLNTHLGRMDLAE 250


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  350 bits (897), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 174/415 (41%), Positives = 258/415 (62%), Gaps = 6/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++ +SWNSM+ G+ +N R  +AL  F +M +S+ +P+  T   ++  C+ LG+ +  
Sbjct: 294 MEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLG 353

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ--RNDVSVWNAMISGVA 118
             +HN +I  K++++  L  A++DMY KCG +  A E+F+  +    DVS WN +ISG  
Sbjct: 354 RKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYG 413

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG   +A  +F++M++  V P+ ITF  +L+ACSH GL++EGRK F  M ++ S++P++
Sbjct: 414 VHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADM-TKLSVRPEM 472

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           +HY  MVD+LGRAG + EA+ LI  +   P   VW ALL ACR     ELGE+A  N+ +
Sbjct: 473 KHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQ 532

Query: 239 L---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L     G YVL+SN+Y    +W   E VR+ MK +G++K    S +E    +H F   D+
Sbjct: 533 LEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQ 592

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           S P  + + + + SL    K  G++P    VL DV  E+KE  L +HSEKLA+A+GI+K 
Sbjct: 593 SSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKM 652

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             G  I+++KNLR+C DCH   K IS +  R IIVRD  RFH F+GG CSCGDYW
Sbjct: 653 DQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 707



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 111/218 (50%), Gaps = 4/218 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +DVV W +MI  + +  R  +AL  FR+M       D+ T  SV     +LG    A  V
Sbjct: 196 RDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISV 255

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   +      +  +  +++ MY+KCG ++ A+ VFD ++  +   WN+M+SG   +G  
Sbjct: 256 HGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRP 315

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYG 182
            DA ++F +M+     P+ +T L +++ACS+ G    GRK  +  + S+  I   L +  
Sbjct: 316 TDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRN-- 373

Query: 183 AMVDLLGRAGHIEEAYGLITSMTM-EPDVVVWRALLSA 219
           A++D+  + G ++ A  +  +  + E DV  W  L+S 
Sbjct: 374 AIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISG 411



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 115/294 (39%), Gaps = 49/294 (16%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA-RLGALNHAYWVHNLII 68
           N+M+  +    R  EA+  +  M    V  + FT+  V+  CA  LGA+     VH  ++
Sbjct: 101 NTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAV-FGEVVHGQVV 159

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
                 +  + AAL+DMY+KCG+I  A EVFD +   DV  W AMI+          A  
Sbjct: 160 RTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALM 219

Query: 129 IFTKMEMFNVLPDSITFLGLLTACSH---------------------------------- 154
           +F KM+    L D IT + + +A                                     
Sbjct: 220 LFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYA 279

Query: 155 -CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM---EPDV 210
            CG VE  R  FD M  R  I      + +M+    + G   +A  L   M     +P+ 
Sbjct: 280 KCGNVERARLVFDRMEERNGIS-----WNSMLSGYTQNGRPTDALSLFNQMQASECDPNP 334

Query: 211 VVWRALLSACRTFKRLELG-EVAIVNISRLMGGDYVL---LSNMYCYLKRWDTA 260
           V    ++SAC       LG ++    IS  M  D  L   + +MY      DTA
Sbjct: 335 VTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTA 388



 Score = 42.0 bits (97), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 12/148 (8%)

Query: 80  AALIDMYSKCGKIQMAKEVFD--------TVQRNDVSVWNAMISGVAIHGLAADASAIFT 131
           A LI +YSK G +  A+ +FD          Q  +  + N M+   A  G + +A  ++ 
Sbjct: 62  ARLIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYI 121

Query: 132 KMEMFNVLPDSITFLGLLTAC-SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGR 190
            M+   V  ++ T+  +L  C S  G V     +   +R+ +     +E   A+VD+  +
Sbjct: 122 YMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVE--AALVDMYAK 179

Query: 191 AGHIEEAYGLITSMTMEPDVVVWRALLS 218
            G I +A+ +   M +  DVV W A+++
Sbjct: 180 CGEIGDAHEVFDRMLIR-DVVCWTAMIT 206


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 174/418 (41%), Positives = 257/418 (61%), Gaps = 13/418 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA-----RLG 55
           M +K  VSWN+MI G+ +N   ++AL  FR+++S   +P      SV+  C+     RLG
Sbjct: 398 MEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLG 457

Query: 56  ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
              H Y +  L++E     +  ++ + IDMY+K G I+ ++ VFD ++  D++ WNA+I+
Sbjct: 458 KETHCYALKALLME-----DVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIA 512

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
              +HG   ++  +F +M     +PD  TF+G+LT CSH GLVEEG KYF+ M++ + I+
Sbjct: 513 AYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIE 572

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVN 235
           P+LEHY  ++D+LGRAG +++A  L+  M  +PD  VW +LLS CR F  LE+G++    
Sbjct: 573 PKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEK 632

Query: 236 ISRLMGG---DYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKA 292
           +  L      +YV LSN+Y    RWD    VR+++K  G++K  G SW+EL G +H F A
Sbjct: 633 LLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGKVHSFVA 692

Query: 293 GDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGI 352
           GD   P+++ +      L ++    G+ P T  VL DV EE+K   L  HSEKLA+ +G+
Sbjct: 693 GDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTSAVLHDVDEEKKIEKLRGHSEKLAICFGL 752

Query: 353 LKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           L T+ GT +RI KNLRIC DCH+  K +S +  R II+RD  RFH F+ GLCSCGDYW
Sbjct: 753 LNTTKGTTLRIFKNLRICVDCHNASKFMSEVTGREIIIRDNKRFHHFKDGLCSCGDYW 810



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 112/223 (50%), Gaps = 10/223 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K V SWN++IGG  +N    +AL  + +M  S + PD FT  S++   A L +L + 
Sbjct: 297 METKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYG 356

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++   +E++  +  +L+ +Y  CG+   A+ +FD ++      WNAMISG + +
Sbjct: 357 KEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQN 416

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  DA  +F K+      P  I  + +L ACS    +  G++        Y+++  L  
Sbjct: 417 GLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKE-----THCYALKALLME 471

Query: 181 ----YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                 + +D+  ++G I+E+  +   +    D+  W A+++A
Sbjct: 472 DVFVACSTIDMYAKSGCIKESRSVFDGLK-NKDLASWNAIIAA 513



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 116/271 (42%), Gaps = 46/271 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK--VEPDKFTFASVIYGCARLGALN 58
           MP +++VSWNS+I GF  N    +      EM++ +  + PD  T  +V+  CAR   + 
Sbjct: 92  MPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQ 151

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H L ++  +  +  ++ +L+DMYSKCG +  A+ +FD   R +   WN MI G+ 
Sbjct: 152 MGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLC 211

Query: 119 IHGLAADASAIFTKMEM-----------FNVLP-------------------------DS 142
             G   +A  +F +M+M            N+LP                         D 
Sbjct: 212 TKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDE 271

Query: 143 ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
           +   G + A + CG++    + F  M ++      +  + A++    + G   +A  L  
Sbjct: 272 LVANGFVAAYAKCGMLICAERVFYSMETK-----TVNSWNALIGGCAQNGDPRKALNLYI 326

Query: 203 SMT---MEPDVVVWRALLSACRTFKRLELGE 230
            MT   + PD     +LL A    K L  G+
Sbjct: 327 QMTYSGLVPDWFTIGSLLLASAHLKSLRYGK 357



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 110/266 (41%), Gaps = 44/266 (16%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           K+ VSWN+MIGG        EA   FREM +   +E ++ T  +++  C  +  L     
Sbjct: 198 KNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKE 257

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H   I    + + +++   +  Y+KCG +  A+ VF +++   V+ WNA+I G A +G 
Sbjct: 258 LHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGD 317

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACS----------------------------- 153
              A  ++ +M    ++PD  T   LL A +                             
Sbjct: 318 PRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGIS 377

Query: 154 ------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL---ITSM 204
                 HCG     R  FD M  + S+      + AM+    + G  E+A  L   + S 
Sbjct: 378 LLSLYIHCGESSSARLLFDGMEEKSSVS-----WNAMISGYSQNGLPEDALILFRKLVSD 432

Query: 205 TMEPDVVVWRALLSACRTFKRLELGE 230
             +P  +   ++L AC     L LG+
Sbjct: 433 GFQPSDIAVVSVLGACSQQSALRLGK 458



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 107/253 (42%), Gaps = 51/253 (20%)

Query: 18  RNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYW--VHNLIIEKKIEL 74
           RN  + +A+  F ++++ ++   D FTF  VI  C   G+L+      +H ++I+  + L
Sbjct: 7   RNELYSDAIDMFVKLITDTEFNADNFTFPCVIKACT--GSLDRGLGEVIHGMVIKMGLLL 64

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           +  +  ALI MY K G +  A +VF  +   ++  WN++ISG + +G + D   +  +M 
Sbjct: 65  DVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMM 124

Query: 135 MF--NVLPDSITFLGLLTAC-----------------------------------SHCGL 157
                +LPD  T + +L  C                                   S CG 
Sbjct: 125 AGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGY 184

Query: 158 VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV----VVW 213
           + E +  FD    + ++      +  M+  L   G+I EA+ L   M M+ D+    V  
Sbjct: 185 LTEAQMLFDKNNRKNAVS-----WNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTV 239

Query: 214 RALLSACRTFKRL 226
             +L AC    +L
Sbjct: 240 LNILPACLEISQL 252


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 173/404 (42%), Positives = 256/404 (63%), Gaps = 4/404 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAY 61
           D++VV WN+MI G+ +N ++ +A+  FR M     V P+  T  SV+  CA LGAL+   
Sbjct: 157 DRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGK 216

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           W+   I  +++ L   L  AL DMY+KCG I  A+ VF+ ++  DV  W+ +I G+A++G
Sbjct: 217 WIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYG 276

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
            A +A   F +M      P+ + F+GLLTAC+H GLV++G   F+ M   Y + P++EHY
Sbjct: 277 HADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHY 336

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL-- 239
           G +VDLL RAG +++A  +I+SM M+P+V++W ALL  CR ++    G+  + +I  L  
Sbjct: 337 GCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILELDS 396

Query: 240 -MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
              G YV L+N+Y  + R D A   R  M++ GV K+ G SW+E+   +H+F  GD SHP
Sbjct: 397 DHSGSYVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSWIEVDNTVHEFFMGDLSHP 456

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           E+  I  ++  L+ + K  G+ P T+LV+  + EEEKE  L  HSEKLA+A+G++ TS G
Sbjct: 457 ESNKIYSMIRELMWKMKLAGYKPKTDLVVHSIDEEEKEDALSIHSEKLAIAFGLISTSEG 516

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGG 402
           T IR+ KNLRIC+DCH   K+IS +++R IIVRDR RFH F+ G
Sbjct: 517 TTIRVVKNLRICNDCHDAAKIISGIVKREIIVRDRSRFHHFKDG 560



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 120/222 (54%), Gaps = 7/222 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK--VEPDKFTFASVIYGCARLGALN 58
           +   ++ + N+ +    +N+ +  A++FF   +SS     PD+FTF SV+  CA L  + 
Sbjct: 50  LASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVV 109

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT--VQRNDVSVWNAMISG 116
           +   +H ++ ++  E N  +  +LIDMY K G + +A+ +FD   V+  +V  WNAMI+G
Sbjct: 110 NGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAG 169

Query: 117 VAIHGLAADASAIFTKMEMF-NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
            A +   +DA  +F  M+ F  V+P+ +T + +L AC+H G ++ G K+ D   SR  + 
Sbjct: 170 YAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLG-KWIDGFISRREMA 228

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             L    A+ D+  + G I EA  +   M  E DV+ W  ++
Sbjct: 229 LGLFLGNALADMYAKCGCITEARRVFNKME-ERDVISWSIII 269



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 60/126 (47%), Gaps = 10/126 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++DV+SW+ +I G       DEA   F EML    +P+   F  ++  C   G +   
Sbjct: 257 MEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKG 316

Query: 61  YWVHNLI-----IEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMI 114
               N +     +  K+E        ++D+ S+ G++  A+++  ++  + +V +W A++
Sbjct: 317 LNCFNTMDKEYGVSPKVE----HYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALL 372

Query: 115 SGVAIH 120
            G  I+
Sbjct: 373 GGCRIY 378


>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 180/419 (42%), Positives = 256/419 (61%), Gaps = 12/419 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K +V+WNS++ GF +N   DEA++ F +M  S  EPD  TF S++  CA+ GA++  
Sbjct: 168 MPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLG 227

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH  II + ++LN  L  ALI++YS+CG +  A+EVFD ++  +V+ W AMIS    H
Sbjct: 228 SWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTH 287

Query: 121 GLAADASAIFTKME-MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           G    A  +F KME     +P+++TF+ +L+AC+H GLVEEGR  +  M   Y + P +E
Sbjct: 288 GYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVE 347

Query: 180 HYGAMVDLLGRAGHIEEAYGLI-----TSMTMEPDVVVWRALLSACRTFKRLELG-EVA- 232
           H+  MVD+LGRAG ++EAY  I     T     P   +W A+L AC+  +  +LG E+A 
Sbjct: 348 HHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAP--ALWTAMLGACKMHRNYDLGVEIAK 405

Query: 233 -IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFK 291
            ++ +     G +V+LSN+Y    + D   ++R+ M +  +RK  G S +E+    + F 
Sbjct: 406 RLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFS 465

Query: 292 AGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYG 351
            GD SH E   I + L +LI R K  G+ P +E V+  V EEEKE  L +HSEKLA+A+G
Sbjct: 466 MGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFG 525

Query: 352 ILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           +LKT     I I KNLRIC DCHS  K IS +  R I VRD++RFH F+ G CSC DYW
Sbjct: 526 LLKTVD-VAITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLDYW 583



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 139/289 (48%), Gaps = 6/289 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  D   +NS+I    +       + ++R MLSS V P  +TF SVI  CA L AL   
Sbjct: 67  VPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIG 126

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   +     L+  + AAL+  YSKCG ++ A++VFD +    +  WN+++SG   +
Sbjct: 127 KGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQN 186

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GLA +A  +F +M      PDS TF+ LL+AC+  G V  G     ++ S   +   ++ 
Sbjct: 187 GLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISE-GLDLNVKL 245

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
             A+++L  R G + +A  +   M  E +V  W A++SA  T      G+ A V +   M
Sbjct: 246 GTALINLYSRCGDVGKAREVFDKMK-ETNVAAWTAMISAYGTHG---YGQQA-VELFNKM 300

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQ 289
             D   + N   ++       +   + + + V K   KS+  + GV H 
Sbjct: 301 EDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHH 349


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 174/415 (41%), Positives = 258/415 (62%), Gaps = 6/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++ +SWNSM+ G+ +N R  +AL  F +M +S+ +P+  T   ++  C+ LG+ +  
Sbjct: 263 MEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLG 322

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ--RNDVSVWNAMISGVA 118
             +HN +I  K++++  L  A++DMY KCG +  A E+F+  +    DVS WN +ISG  
Sbjct: 323 RKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYG 382

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG   +A  +F++M++  V P+ ITF  +L+ACSH GL++EGRK F  M ++ S++P++
Sbjct: 383 VHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADM-TKLSVRPEM 441

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           +HY  MVD+LGRAG + EA+ LI  +   P   VW ALL ACR     ELGE+A  N+ +
Sbjct: 442 KHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQ 501

Query: 239 L---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L     G YVL+SN+Y    +W   E VR+ MK +G++K    S +E    +H F   D+
Sbjct: 502 LEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQ 561

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           S P  + + + + SL    K  G++P    VL DV  E+KE  L +HSEKLA+A+GI+K 
Sbjct: 562 SSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKM 621

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             G  I+++KNLR+C DCH   K IS +  R IIVRD  RFH F+GG CSCGDYW
Sbjct: 622 DQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 676



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 113/263 (42%), Gaps = 18/263 (6%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA-RLGALNHAYWVHNLII 68
           N+M+  +    R  EA+  +  M    V  + FT+  V+  CA  LGA+     VH  ++
Sbjct: 101 NTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAV-FGEVVHGQVV 159

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
                 +  + AAL+DMY+KCG+I  A EVFD +   DV  W AMI+          A  
Sbjct: 160 RTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALM 219

Query: 129 IFTKMEMFNVLPDSITFLGLLTACSHCG----LVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           +F KM+    L D IT + + +A    G     +   R  FD M  R  I      + +M
Sbjct: 220 LFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNGIS-----WNSM 274

Query: 185 VDLLGRAGHIEEAYGLITSMTM---EPDVVVWRALLSACRTFKRLELG-EVAIVNISRLM 240
           +    + G   +A  L   M     +P+ V    ++SAC       LG ++    IS  M
Sbjct: 275 LSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKM 334

Query: 241 GGDYVL---LSNMYCYLKRWDTA 260
             D  L   + +MY      DTA
Sbjct: 335 DIDTTLRNAIMDMYMKCGDLDTA 357



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 35/218 (16%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +DVV W +MI  + +  R  +AL  FR+M       D+ T  SV     +LG    A   
Sbjct: 196 RDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMA--- 252

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
                                       I  A+ VFD ++  +   WN+M+SG   +G  
Sbjct: 253 ----------------------------ISRARLVFDRMEERNGISWNSMLSGYTQNGRP 284

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYG 182
            DA ++F +M+     P+ +T L +++ACS+ G    GRK  +  + S+  I   L +  
Sbjct: 285 TDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRN-- 342

Query: 183 AMVDLLGRAGHIEEAYGLITSMTM-EPDVVVWRALLSA 219
           A++D+  + G ++ A  +  +  + E DV  W  L+S 
Sbjct: 343 AIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISG 380



 Score = 42.0 bits (97), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 12/148 (8%)

Query: 80  AALIDMYSKCGKIQMAKEVFD--------TVQRNDVSVWNAMISGVAIHGLAADASAIFT 131
           A LI +YSK G +  A+ +FD          Q  +  + N M+   A  G + +A  ++ 
Sbjct: 62  ARLIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYI 121

Query: 132 KMEMFNVLPDSITFLGLLTAC-SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGR 190
            M+   V  ++ T+  +L  C S  G V     +   +R+ +     +E   A+VD+  +
Sbjct: 122 YMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVE--AALVDMYAK 179

Query: 191 AGHIEEAYGLITSMTMEPDVVVWRALLS 218
            G I +A+ +   M +  DVV W A+++
Sbjct: 180 CGEIGDAHEVFDRMLIR-DVVCWTAMIT 206


>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
          Length = 978

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 172/417 (41%), Positives = 260/417 (62%), Gaps = 7/417 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+VSWNSMI  + +    +EAL+ + +M  S V  D FT  S++  CA +GAL+  
Sbjct: 562 MPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMG 621

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H    E+++  N  +  ALIDMY+KCG +  A  +F+++ + DV  WN+MI G  +H
Sbjct: 622 VQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVH 681

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A   F  M M  V P+SITFLGLL  CSH GLV+EG +YF  M S ++++P ++H
Sbjct: 682 GRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKH 741

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDL GRAG ++EA  +I S   + D V+WR LL +C+  + +E+GE+A   +V + 
Sbjct: 742 YGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLG 801

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
            L  GD VLLS +Y   K       +R++++ +G++ + G SW+E+   +H+F   D+SH
Sbjct: 802 SLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSH 861

Query: 298 PEAQAIDKILGSLIQRTKSEGF-LPATELVLMDVSEEEK---EGNLYHHSEKLALAYGIL 353
           P+++ I + L  +I R    G+ +  + LV    S  ++   E +  +HSEKLA+AYG+ 
Sbjct: 862 PDSREIYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLA 921

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           +T  GT + I KNLR+C DCH++ K +S+   R IIVRDR+RFH F GG CSC ++W
Sbjct: 922 RTPEGTSLLIVKNLRVCRDCHNFTKFVSKAFDREIIVRDRVRFHHFRGGHCSCKEFW 978



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 5/218 (2%)

Query: 3   DKDVVSWNSMIGGFVRNARFDE--ALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           +    +WNSMI GF ++    +  A+ F+  MLS S   PD +TF+ ++  C        
Sbjct: 460 NPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGK 519

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              VH  II    + + +L   LI  Y+  G I+ A +VF+ +   D+  WN+MIS    
Sbjct: 520 CREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQ 579

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            GL  +A  ++ +M + NV  D  T + LL++C+H G +  G +       R  ++  + 
Sbjct: 580 TGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVE-NIF 638

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              A++D+  + G +  A  +  SM    DV  W +++
Sbjct: 639 VGNALIDMYAKCGSLASALSIFNSMPKR-DVFTWNSMI 675


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 183/425 (43%), Positives = 252/425 (59%), Gaps = 17/425 (4%)

Query: 1   MPDKDVVSWNSMIGG-------------FVRNARFDEALRFFREMLSSKVEPDKFTFASV 47
           MP ++VV+W SMI G             + R     EAL  F  M    V P   +  SV
Sbjct: 144 MPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISV 203

Query: 48  IYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDV 107
           +  C  L +L+H   VH+ ++  + +++  +S+ LI MY KCG +  AK VFD     D+
Sbjct: 204 LSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDI 263

Query: 108 SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH 167
            +WN++I+G A HG    A  +F  M   ++ PD ITF+G+L+ACS+ G V+EG + F+ 
Sbjct: 264 VMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFES 323

Query: 168 MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
           M+S+Y + P+ EHY  MVDLLGRAG + EA  LI +M +E D +VW ALL ACRT K L+
Sbjct: 324 MKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLD 383

Query: 228 LGEVAIVNISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELA 284
           L E+A   + +L     G Y+LLSN+Y    RW     +R+ M+ K +RKS G SW+E+ 
Sbjct: 384 LAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWIEVD 443

Query: 285 GVIHQFK-AGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHS 343
             +H F   G  SHPE + I K LG L    +  G+ P    V+ DV EEEK  +L  HS
Sbjct: 444 KKVHIFSGGGSTSHPEHEMILKKLGKLGALLREAGYCPDGSFVMHDVDEEEKVHSLRDHS 503

Query: 344 EKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGL 403
           EKLA+AYG+LK   G  IR+ KNLR+C D HS IK+I+++  R II+RD  RFH F+ GL
Sbjct: 504 EKLAVAYGLLKVPEGMPIRVMKNLRVCGDSHSTIKLIAQVTGREIILRDTNRFHHFKDGL 563

Query: 404 CSCGD 408
           CSC D
Sbjct: 564 CSCSD 568



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/260 (20%), Positives = 117/260 (45%), Gaps = 48/260 (18%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+ + +SWN ++ G+V+N    EA + F +M    V     ++ ++I G  + G +  A
Sbjct: 20  MPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNV----VSWTAMIRGYVQEGLIEEA 75

Query: 61  ---YW-------------VHNLIIEKKIE-----------LNFILSAALIDMYSKCGKIQ 93
              +W             +  LI + +++            + + S  +ID     G++ 
Sbjct: 76  ELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVASTNMIDGLCSEGRLI 135

Query: 94  MAKEVFDTVQRNDVSVWNAMISG----------VAIH---GLAADASAIFTKMEMFNVLP 140
            A+E+FD + + +V  W +MISG          + I+   G   +A A+F+ M+   V P
Sbjct: 136 EAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRP 195

Query: 141 DSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199
              + + +L+ C     ++ GR+    + RS++ I   +     ++ +  + G +  A  
Sbjct: 196 SFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVS--SVLITMYIKCGDLVTAKR 253

Query: 200 LITSMTMEPDVVVWRALLSA 219
           +    + + D+V+W ++++ 
Sbjct: 254 VFDRFSSK-DIVMWNSIIAG 272



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 10/153 (6%)

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           + +K  E N I    L+  Y + G I  A++VFD +   +V  W AMI G    GL  +A
Sbjct: 16  LFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEA 75

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186
             +F +M   NV+  ++   GL+      G V+E R+ FD M  +  +         M+D
Sbjct: 76  ELLFWRMPERNVVSWTVMLGGLIED----GRVDEARQLFDMMPVKDVVAST-----NMID 126

Query: 187 LLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            L   G + EA  +   M  + +VV W +++S 
Sbjct: 127 GLCSEGRLIEAREIFDEMP-QRNVVAWTSMISG 158



 Score = 45.8 bits (107), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 65/146 (44%), Gaps = 9/146 (6%)

Query: 86  YSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145
           Y +  + + A+++FD +   +   WN ++SG   +G+ ++A  +F KM   NV    +++
Sbjct: 4   YFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNV----VSW 59

Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
             ++      GL+EE    F  M  R  +      +  M+  L   G ++EA  L   M 
Sbjct: 60  TAMIRGYVQEGLIEEAELLFWRMPERNVVS-----WTVMLGGLIEDGRVDEARQLFDMMP 114

Query: 206 MEPDVVVWRALLSACRTFKRLELGEV 231
           ++  V     +   C   + +E  E+
Sbjct: 115 VKDVVASTNMIDGLCSEGRLIEAREI 140


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 170/413 (41%), Positives = 254/413 (61%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  K+ VSWN++I GF R    +  L  F EM  +      FT++SV    AR+GAL   
Sbjct: 224 LDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQG 283

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH  +I+   +L   ++  ++ MY+K G +  A++VFD V + D+  WN M++  A +
Sbjct: 284 RWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQY 343

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A A F ++  + +  + ITFL +LTACSH GLV+EG++YFD M+  Y+++P+++H
Sbjct: 344 GLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFDMMKD-YNVEPEIDH 402

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y + VDLLGRAG ++EA   +  M MEP   VW ALL ACR  K  ++G+ A  ++  L 
Sbjct: 403 YVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELD 462

Query: 241 G---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G  VLL N+Y    +WD A  VR++MK  GV+K    SW+E+   +H F A D +H
Sbjct: 463 PEDTGPPVLLYNIYASTGQWDDAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTH 522

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+++ I ++   +  R K  G++P T+ VL+ + E+E+E  L +HSEK+ALA+ ++    
Sbjct: 523 PKSEEIYRMWEEVNTRIKKAGYVPNTDYVLLHIKEQERETKLQYHSEKIALAFALINMPA 582

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KN+RIC DCHS  + +S + +R I+VRD  RFH F  G CSCGDYW
Sbjct: 583 GATIRIMKNIRICGDCHSAFRYVSEVFKREIVVRDTNRFHHFSNGSCSCGDYW 635



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 118/240 (49%), Gaps = 7/240 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P +DVVSW  +I G+ +N    EAL    +ML ++  P  FTF S +      G     
Sbjct: 123 IPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIG 182

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L ++  ++ +  + +AL+DMY++C ++ MA  VFD +   +   WNA+I+G A  
Sbjct: 183 EQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARK 242

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLE 179
           G        F +M+         T+  + +A +  G +E+GR    HM +S   +   + 
Sbjct: 243 GDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVA 302

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           +   ++ +  ++G + +A  +   +  + D+V W  +L+A   F +  LG+ A+ +   +
Sbjct: 303 N--TILGMYAKSGSMVDARKVFDRVD-QRDLVTWNTMLTA---FAQYGLGKEAVAHFEEI 356



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 109/247 (44%), Gaps = 15/247 (6%)

Query: 25  ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84
            LR    +L+ ++ P    + S+I  CA+   L  A  +H+ +   ++  +  L  +LI 
Sbjct: 46  GLRELDLLLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIH 105

Query: 85  MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSIT 144
           MY KCG +  A+ VFD +   DV  W  +I+G A + + A+A  +   M      P   T
Sbjct: 106 MYCKCGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFT 165

Query: 145 FLGLLTACSHCGLVEEGRKYFDHMRS---RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
           F   L A   CG    GR   + M +   +Y++   +    A++D+  R   ++ A  + 
Sbjct: 166 FTSFLKAAGACG----GRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVF 221

Query: 202 TSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL----MGGDYVLLSNMYCYLKRW 257
             +  + + V W AL++    F R   GE  ++  + +     G  +   S+++  L R 
Sbjct: 222 DWLDSKNE-VSWNALIAG---FARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARI 277

Query: 258 DTAENVR 264
              E  R
Sbjct: 278 GALEQGR 284


>gi|115458888|ref|NP_001053044.1| Os04g0469400 [Oryza sativa Japonica Group]
 gi|113564615|dbj|BAF14958.1| Os04g0469400, partial [Oryza sativa Japonica Group]
          Length = 401

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 170/399 (42%), Positives = 244/399 (61%), Gaps = 4/399 (1%)

Query: 16  FVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELN 75
           F  N    EA+  F +ML++ ++PD      ++   A L +L     +H  +I  K  + 
Sbjct: 3   FAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVE 62

Query: 76  FILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEM 135
             + ++L+DMYS CG +  A +VFD  +  DV +W AMI+   +HG    A  IF +M  
Sbjct: 63  GAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLE 122

Query: 136 FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIE 195
             V PD ++FL LL ACSH  LV+EG+ Y D M S+Y +QP  EHY  +VDLLGR+G  E
Sbjct: 123 TGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTE 182

Query: 196 EAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---MGGDYVLLSNMYC 252
           EAY  I SM +EP  VVW ALL ACR  K  EL  +A   +  L     G+YVL+SN++ 
Sbjct: 183 EAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFA 242

Query: 253 YLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQ 312
            + +W+  + +R  M ++G+RK    SW+E+   +H F A D SH ++QAI   L  + +
Sbjct: 243 EMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEITE 302

Query: 313 RTKSEG-FLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIRISKNLRICH 371
           + + EG ++  T  VL DVSEEEK   L+ HSE+LA+++G++ T+ GT +RI+KNLR+C 
Sbjct: 303 KLRREGQYVEDTSFVLHDVSEEEKIDLLHRHSERLAISFGLISTASGTPLRIAKNLRVCG 362

Query: 372 DCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           DCH + K++S+L  R I+VRD  RFH F GG CSCGD+W
Sbjct: 363 DCHEFTKLVSKLFEREIVVRDANRFHHFSGGTCSCGDFW 401



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDVV W +MI     +    +A+  F+ ML + V PD  +F +++Y C+    ++   + 
Sbjct: 92  KDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFY 151

Query: 64  HNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS-VWNAMISGVAIH 120
            ++++ K K++      A ++D+  + G+ + A +   ++     S VW A++    IH
Sbjct: 152 LDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIH 210


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 174/395 (44%), Positives = 252/395 (63%), Gaps = 3/395 (0%)

Query: 19  NARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFIL 78
           + R  EAL  F  M ++ ++ D     S +  CA LG L+   W+H  I + +IE++ IL
Sbjct: 180 DQRDTEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPIL 239

Query: 79  SAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNV 138
              LIDMY+KCG ++ A EVF  ++   VSVW AMISG AIHG   +A   F KM+   V
Sbjct: 240 GCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGV 299

Query: 139 LPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAY 198
            P+ +TF G+LTACSH GLV E +  F+ M   +  +P +EHYG MVDLLGRAG ++EA 
Sbjct: 300 EPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAE 359

Query: 199 GLITSMTMEPDVVVWRALLSACRTFKRLELGEV---AIVNISRLMGGDYVLLSNMYCYLK 255
            LI +M ++P+  +W ALL+AC     LELG+     ++ +    GG Y+ L++++    
Sbjct: 360 ELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAG 419

Query: 256 RWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTK 315
            W+ A  VR  MK++GV K  G S + + G  H+F AGD SHP+ + ID +L  +++R +
Sbjct: 420 EWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLR 479

Query: 316 SEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIRISKNLRICHDCHS 375
            EG+ P    +L+D+ ++EKE  ++HHSEKLA+ +G++ T PG  IRI KNLR+C DCH+
Sbjct: 480 EEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHT 539

Query: 376 WIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IK+IS++  R I++RDR RFH F+ G C+CGDYW
Sbjct: 540 VIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 574



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 100/212 (47%), Gaps = 21/212 (9%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           WN+MI G+  +   +EAL  +  ML   V  + +TF  ++  C+ + AL     +H  II
Sbjct: 86  WNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHII 145

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
           +         + +L+++YSK G I+ A+ +FD V + D    N                 
Sbjct: 146 KMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTEALN----------------- 188

Query: 129 IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLEHYGAMVDL 187
           +F +M+   +  D++  +  L AC+  G++++G+    +++     I P L     ++D+
Sbjct: 189 LFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILG--CVLIDM 246

Query: 188 LGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             + G +EEA  +   M  E  V VW A++S 
Sbjct: 247 YAKCGDLEEAIEVFRKME-EKGVSVWTAMISG 277



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 68/127 (53%), Gaps = 10/127 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +K V  W +MI G+  + R  EAL +F +M ++ VEP++ TF  ++  C+  G ++ A
Sbjct: 263 MEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEA 322

Query: 61  YWVHNLIIEKKIELNFILSA-----ALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMI 114
                L+ E    ++    +      ++D+  + G ++ A+E+ + +  + + ++W A++
Sbjct: 323 ----KLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALL 378

Query: 115 SGVAIHG 121
           +   IHG
Sbjct: 379 NACHIHG 385



 Score = 44.3 bits (103), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 33/155 (21%), Positives = 73/155 (47%), Gaps = 3/155 (1%)

Query: 45  ASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYS--KCGKIQMAKEVFDTV 102
           A  ++   R   +     +H  +++  + L+ I ++ L+   +    G +  A+ VFD +
Sbjct: 19  AQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRI 78

Query: 103 QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR 162
            R +  +WN MI G +      +A  ++  M   +V  ++ TF  LL ACS    +EE +
Sbjct: 79  FRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQ 138

Query: 163 KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEA 197
           +   H+  +     ++    +++++  ++G I+ A
Sbjct: 139 QIHAHI-IKMGFGSEIYTTNSLLNVYSKSGDIKSA 172


>gi|125578382|gb|EAZ19528.1| hypothetical protein OsJ_35094 [Oryza sativa Japonica Group]
          Length = 591

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 161/419 (38%), Positives = 255/419 (60%), Gaps = 12/419 (2%)

Query: 4   KDVVSWNSMIGGFVR---------NARFDEALRFFREMLSSKVEPDKFTFASVIYGCARL 54
            D+ +WN+++  + R          +  D  L  F  MLS  +EP++ T  +VI  C  L
Sbjct: 173 PDLPAWNALLSAYARLRARDVACATSAADAILELFVRMLSLAIEPNEITLVAVIGACGEL 232

Query: 55  GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMI 114
           GA++H  W H   +++++ +N I++ AL++MY+ CG++ +A++VF      D   +NAM+
Sbjct: 233 GAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAML 292

Query: 115 SGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI 174
            G+A+HG    A ++  +M    V  D +T L ++ AC+H GLV+EG  YFD M   + I
Sbjct: 293 HGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGI 352

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIV 234
           +P++EHYG M+D+L RAG +  A  LI  M + P+  ++R+L+ AC    +LELGE  I 
Sbjct: 353 EPRIEHYGCMIDMLSRAGRLNNAEKLIHEMLIVPNAAIYRSLIRACGIHGKLELGEKMIA 412

Query: 235 NISRLM---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFK 291
            + RL     G++VL+SN Y    RW+ A+  R+ MK  G+ K+ G S +++ GV+H+F 
Sbjct: 413 ELMRLEPDDSGNHVLISNFYARTNRWEDAKKARKEMKSMGIDKNPGSSLVDINGVLHEFL 472

Query: 292 AGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYG 351
            GD++HP ++ I  ++  +  R    G   +T   L DV EE+K   L +HSE+LA+A+ 
Sbjct: 473 VGDKTHPASKEIYTMVEEIETRLIECGRRSSTSSALFDVEEEDKADTLSYHSERLAIAFA 532

Query: 352 ILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           ++ ++PG  IRI KNLR+C DCH   K++SR+  R I++RDR RFH F  G+CSCGD+W
Sbjct: 533 LIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 591



 Score = 46.6 bits (109), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 2/121 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY- 61
           D+D   +N+M+ G   +     AL     M  + V  D  T  SV+  CA  G ++    
Sbjct: 282 DRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLD 341

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMA-KEVFDTVQRNDVSVWNAMISGVAIH 120
           +   + IE  IE        +IDM S+ G++  A K + + +   + +++ ++I    IH
Sbjct: 342 YFDRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEMLIVPNAAIYRSLIRACGIH 401

Query: 121 G 121
           G
Sbjct: 402 G 402



 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 9/80 (11%)

Query: 91  KIQMAKEVFDTVQRNDVSVWNAMISG--------VAIHGLAADAS-AIFTKMEMFNVLPD 141
           +I   + VFD +   D+  WNA++S         VA    AADA   +F +M    + P+
Sbjct: 159 RIASCRRVFDGIAHPDLPAWNALLSAYARLRARDVACATSAADAILELFVRMLSLAIEPN 218

Query: 142 SITFLGLLTACSHCGLVEEG 161
            IT + ++ AC   G V  G
Sbjct: 219 EITLVAVIGACGELGAVSHG 238


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 173/414 (41%), Positives = 249/414 (60%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++DVV+W +MI G+ +N R DEA+  FR M++   EP+ +T A+V+  CA L  L++ 
Sbjct: 391 MNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYG 450

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAI 119
             +H   I   +E +  +S A+I MY++ G    A+ +FD V  R +   W +MI  +A 
Sbjct: 451 KQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQ 510

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +A  +F +M    V PD IT++G+L+ACSH G V EG++Y+D +++ + I P++ 
Sbjct: 511 HGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMS 570

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HY  MVDLL RAG   EA   I  M +EPD + W +LLSACR  K  EL E+A   +++I
Sbjct: 571 HYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSI 630

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G Y  ++N+Y    RW  A  + +  K+K VRK  G SW  +   IH F A D  
Sbjct: 631 DPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVV 690

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+  A+  +   + +  K  GF+P  + VL DV +E KE  L  HSEKLA+A+G++ T 
Sbjct: 691 HPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTP 750

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             T +R+ KNLR+C+DCH+ IK IS++  R IIVRD  RFH F  GLCSC DYW
Sbjct: 751 EKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 120/251 (47%), Gaps = 36/251 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D VSW  M+ G  R  RF EA++   +M +    P +FT  +V+  CA   A    
Sbjct: 124 MPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVG 183

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS----- 115
             VH+ +++  +     ++ ++++MY KCG  + A  VF+ +    VS WNAM+S     
Sbjct: 184 RKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHL 243

Query: 116 --------------------------GVAIHGLAADASAIFTKM-EMFNVLPDSITFLGL 148
                                     G   +GL A A  +F++M    ++ PD  T   +
Sbjct: 244 GRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSV 303

Query: 149 LTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI-TSMTM 206
           L+AC++ G V  G++   + +R+  +   Q+ +  A++    ++G +E A  ++  SM  
Sbjct: 304 LSACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALISTYAKSGSVENARRIMDQSMET 361

Query: 207 EPDVVVWRALL 217
           + +V+ + ALL
Sbjct: 362 DLNVISFTALL 372



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 119/292 (40%), Gaps = 76/292 (26%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           MP + +VSWN+MI G+ +N    +AL+ F  ML  S + PD+FT  SV+  CA LG +  
Sbjct: 256 MPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRI 315

Query: 60  AYWVHNLIIEKKI---------------------------------ELNFILSAALIDMY 86
              VH  I+  ++                                 +LN I   AL++ Y
Sbjct: 316 GKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGY 375

Query: 87  SKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFL 146
            K G ++ A+E+F  +   DV  W AMI G   +G   +A  +F  M      P+S T  
Sbjct: 376 VKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLA 435

Query: 147 GLLTACS-----------HC------------------------GLVEEGRKYFDHMRSR 171
            +L+ C+           HC                        G     R+ FD +  R
Sbjct: 436 AVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWR 495

Query: 172 YSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSAC 220
                +   + +M+  L + G  EEA GL   M    +EPD + +  +LSAC
Sbjct: 496 ----KETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSAC 543



 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 2/150 (1%)

Query: 81  ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP 140
           +L+ M++K G++  A+ VF  +   D   W  M+ G+   G   +A      M      P
Sbjct: 103 SLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTP 162

Query: 141 DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL 200
              T   +L++C+       GRK    +  +  +   +    +++++ G+ G  E A  +
Sbjct: 163 TQFTLTNVLSSCAVTQAGAVGRKVHSFV-VKLGLGSCVPVANSVLNMYGKCGDAETASTV 221

Query: 201 ITSMTMEPDVVVWRALLSACRTFKRLELGE 230
              M +   V  W A++S      R++L E
Sbjct: 222 FERMPVR-SVSSWNAMVSLNTHLGRMDLAE 250


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 178/414 (42%), Positives = 254/414 (61%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D  +W++MI  + +N    EAL  FREML   V P+  +  S++  CA L  L++ 
Sbjct: 293 MRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYG 352

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++    +++    +ALI MY KCG +  AK VF T +  D+ +WN+MI+G A H
Sbjct: 353 REVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQH 412

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL   A  IF  M +  + PD IT++G LTACS+ G V+EGR+ F+ M    SI+P  EH
Sbjct: 413 GLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEH 472

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MVDLLGR+G +EEA+ LI +M +EPD V+W AL+ ACR  +  E+ EVA   +  L 
Sbjct: 473 YSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELE 532

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD-RS 296
            G+   YVLLS++Y  + RW+ A  +R+ +  + + KS G SW+E    +H F +GD  +
Sbjct: 533 PGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLA 592

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HPE  AI +IL  L       G+      VL D+ EE+K  +L +HSE+ A+AYG+LK  
Sbjct: 593 HPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIP 652

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  IR+ KNLR+C DCHS IK+I+++  R I++RD  RFH F+ G CSC DYW
Sbjct: 653 EGMPIRVMKNLRVCGDCHSAIKLIAKITSREIVLRDANRFHHFKDGFCSCRDYW 706



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 100/237 (42%), Gaps = 42/237 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKV----------------------- 37
           MP +   S+N+++ G+ RN   D AL  FR M S  +                       
Sbjct: 43  MPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAA 102

Query: 38  ------EPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK 91
                  P   +F S++ G  R G L  A  +   + E+      +L   L+D     G+
Sbjct: 103 LASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLD----AGR 158

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           +  A+ +FD +   DV  W AM+SG    G   +A A+F +M   NV    +++  +++ 
Sbjct: 159 VNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV----VSWTAMISG 214

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
            +  G V   RK F+ M  R  +      + AM+    +AGH+E+A  L  +M   P
Sbjct: 215 YAQNGEVNLARKLFEVMPERNEVS-----WTAMLVGYIQAGHVEDAAELFNAMPEHP 266



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 116/234 (49%), Gaps = 15/234 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++VVSW +MI G+ +N   + A + F  M     E ++ ++ +++ G  + G +  A
Sbjct: 200 MPKRNVVSWTAMISGYAQNGEVNLARKLFEVM----PERNEVSWTAMLVGYIQAGHVEDA 255

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             + N + E  +        A++  + + G +  AK VF+ ++  D   W+AMI     +
Sbjct: 256 AELFNAMPEHPVAA----CNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQN 311

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A + F +M    V P+  + + +LT C+   +++ GR+    M  R S    +  
Sbjct: 312 EFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAML-RCSFDMDVFA 370

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEP-DVVVWRALLSACRTFKRLELGEVAI 233
             A++ +  + G++++A  +    T EP D+V+W ++++    + +  LGE A+
Sbjct: 371 VSALITMYIKCGNLDKAKRVFH--TFEPKDIVMWNSMITG---YAQHGLGEQAL 419


>gi|115470991|ref|NP_001059094.1| Os07g0191500 [Oryza sativa Japonica Group]
 gi|34394559|dbj|BAC83863.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510108|dbj|BAD30876.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610630|dbj|BAF21008.1| Os07g0191500 [Oryza sativa Japonica Group]
          Length = 550

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 177/426 (41%), Positives = 268/426 (62%), Gaps = 16/426 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           +PD+ +VSWN+ +   V N     AL  FREM   +++ PD +T  SV+  CA  GAL+ 
Sbjct: 125 IPDRSLVSWNTAVDALVGNGDHLAALDLFREMQRDTELAPDAYTVQSVLGACAGAGALSL 184

Query: 60  AYWVHNLIIEK--------KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWN 111
             + H L++ +         +  + +++ +L+D+Y KCG +++A++VFD +   D++ WN
Sbjct: 185 GVYAHALLLRELGGDGDGEAVSRDMLINNSLVDLYGKCGALELAQQVFDRMPARDLASWN 244

Query: 112 AMISGVAIHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS 170
            MI  +A HG   ++  +F +M ++  + P++ITF+ +L+AC+H GLVEEGR+YF  M  
Sbjct: 245 VMILTLANHGRVCESVELFDRMTQVEKMAPNAITFVAVLSACNHGGLVEEGRRYFAMMVD 304

Query: 171 RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA-CRTFKRLELG 229
           +Y I+P++EHYG MVDLL RAG IEEA  ++  M   PD ++WR+LL A C+    LEL 
Sbjct: 305 QYRIKPRIEHYGCMVDLLARAGFIEEALDIVAGMNCRPDAIIWRSLLDACCKKNAGLELT 364

Query: 230 E----VAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAG 285
           E    +A+      + G YVLLS +Y   +RW+    VR +M ++GV+K  G S +E+ G
Sbjct: 365 EAMAKLALEVPDDAVSGVYVLLSRVYASAQRWNDVGMVRRLMVEEGVKKEPGFSSIEMDG 424

Query: 286 VIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLP-ATELVLMDVSEEEKEGNLYHHSE 344
           ++HQF AGD SHP+++AI + L  +  +  S G+ P  +E  L+   +  K   L  HSE
Sbjct: 425 LVHQFVAGDTSHPQSEAIYEKLDEIQLKLTSAGYKPDLSEAPLVASIDNAKGAALRLHSE 484

Query: 345 KLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLC 404
           +LA+++G+L  +PG  IRI KNLR+C DCH+  K+IS+L    IIVRDRIRFH F+ G C
Sbjct: 485 RLAISFGLLNATPGAPIRILKNLRVCKDCHTISKLISKLYGVEIIVRDRIRFHHFKDGSC 544

Query: 405 SCGDYW 410
           SC DYW
Sbjct: 545 SCKDYW 550



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 95/246 (38%), Gaps = 55/246 (22%)

Query: 25  ALRFFREMLSSKVEPDK-FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNF-ILSAAL 82
           AL  FR + S+   P    +  +V+   A L AL     +H L  +  +  +  +++ +L
Sbjct: 46  ALLLFRSLQSTPSPPPPHVSLPAVLSAAAFLSALPEGRQLHALAAKLGLAPSHTVVANSL 105

Query: 83  IDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVL-PD 141
           + +YS CG    A ++F  +    +  WN  +  +  +G    A  +F +M+    L PD
Sbjct: 106 LHLYSSCGLPGAALDLFRRIPDRSLVSWNTAVDALVGNGDHLAALDLFREMQRDTELAPD 165

Query: 142 SITFLGLLTACS-------------------------------------------HCGLV 158
           + T   +L AC+                                            CG +
Sbjct: 166 AYTVQSVLGACAGAGALSLGVYAHALLLRELGGDGDGEAVSRDMLINNSLVDLYGKCGAL 225

Query: 159 EEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT----MEPDVVVWR 214
           E  ++ FD M +R      L  +  M+  L   G + E+  L   MT    M P+ + + 
Sbjct: 226 ELAQQVFDRMPAR-----DLASWNVMILTLANHGRVCESVELFDRMTQVEKMAPNAITFV 280

Query: 215 ALLSAC 220
           A+LSAC
Sbjct: 281 AVLSAC 286


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 172/414 (41%), Positives = 250/414 (60%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D++V++W +M+ G  +N   ++ALR F +M    +  +  TF S+++ CA LG+L   
Sbjct: 392 MKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRG 451

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
             +H  +       + +   AL+DMY+KCGKI +A+ +F       DV +WN+MI+G  +
Sbjct: 452 RSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGM 511

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG    A  I+ KM    + P+  TFL LL+ACSH  LVE+G   F+ M   ++I+P  +
Sbjct: 512 HGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEK 571

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG---EVAIVNI 236
           HY  +VDLL RAG  EEA  LI  M  +P   V  ALLS CRT K + LG      ++ +
Sbjct: 572 HYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLAL 631

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
             +  G Y++LSN+Y   +RWD  + +R +M+ +G++K+ G S +E    +H F AGD S
Sbjct: 632 DAMNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNS 691

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP  + I   L SL    ++ G++P T  VL DV EE K   L+ HSE+LA+A+G+L T 
Sbjct: 692 HPNWEEIYHFLESLRSAVETSGYVPDTSCVLRDVDEEMKVRMLWGHSERLAIAFGLLTTP 751

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G+ IRI+KNLR+C DCH+  K IS++++R IIVRD  RFH F  G CSCGDYW
Sbjct: 752 AGSLIRITKNLRVCGDCHTVTKYISKIVKREIIVRDANRFHHFSNGECSCGDYW 805



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 124/219 (56%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +++VSWN+MI G VRN    E+   F  ++ S    D  T  S++ GC++  +L   
Sbjct: 292 MPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATG 351

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   I +  E N ILS A++D+YSKCG ++ A  VF+ ++  +V  W AM+ G+A +
Sbjct: 352 KILHGCAI-RSFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQN 410

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A DA  +F +M+   +  +S+TF+ L+ +C+H G ++ GR    H+  R      + +
Sbjct: 411 GHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHL-FRLGFAFDIVN 469

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A+VD+  + G I  A  + +  ++  DVV+W ++++ 
Sbjct: 470 MTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITG 508



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 114/217 (52%), Gaps = 3/217 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KDVV WNS+IGG+V+   FD A + F EM  S ++P   T  S+I  C  +G L   
Sbjct: 191 MPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLG 250

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  ++   +  + ++  + +DMYSK G I+ A+ VF  +   ++  WNAMISG   +
Sbjct: 251 KCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRN 310

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  ++  +F ++   +   D  T + LL  CS    +  G+    H  +  S +  L  
Sbjct: 311 GLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKIL--HGCAIRSFESNLIL 368

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             A+VDL  + G +++A  +   M  + +V+ W A+L
Sbjct: 369 STAIVDLYSKCGSLKQATFVFNRMK-DRNVITWTAML 404



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 97/211 (45%), Gaps = 2/211 (0%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIE 69
           N+M+ G++++ R+ E L  F  M S  +E D  +    +  CA          + +  +E
Sbjct: 99  NAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVE 158

Query: 70  KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAI 129
           K +E N  + +++I    K GKI  A+ VFD +   DV  WN++I G    G    A  +
Sbjct: 159 KGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQL 218

Query: 130 FTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLG 189
           F +M    + P  IT   L+ AC   G ++ G+    ++     +   +    + VD+  
Sbjct: 219 FFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLG-LGLGNDILVLTSFVDMYS 277

Query: 190 RAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
           + G IE A  +   M    ++V W A++S C
Sbjct: 278 KMGDIESARWVFYKMPTR-NLVSWNAMISGC 307



 Score = 38.5 bits (88), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 13/165 (7%)

Query: 62  WV---HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
           WV   H  II   +  +  ++  L+  YS    ++ A+ VFD   +    + NAM+ G  
Sbjct: 47  WVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYL 106

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
             G   +   +F  M   N+  DS +    L AC+     E G +         +++  +
Sbjct: 107 QSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISS-----AVEKGM 161

Query: 179 EHY----GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           E       +M+  L + G I EA  +   M    DVV W +++  
Sbjct: 162 EKNRFVGSSMISFLVKFGKIGEAQRVFDGMP-NKDVVCWNSIIGG 205


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 174/410 (42%), Positives = 248/410 (60%), Gaps = 5/410 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M   D + WNS+IGGF +N+R D AL  F+ M  +    ++ T  SV+  C  L  L   
Sbjct: 172 MVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 231

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H  I+  K + + IL+ AL+DMY KCG ++ A+ VF+ ++  DV  W+ MISG+A +
Sbjct: 232 MQAHVHIV--KYDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQN 289

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G + +A  +F  M+     P+ IT +G+L ACSH GL+E+G  YF  M+  Y I P  EH
Sbjct: 290 GYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREH 349

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG M+DLLG+AG +++A  L+  M  EPD V WR LL ACR  + + L E A   ++ + 
Sbjct: 350 YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALD 409

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y +LSN+Y   ++WD+ E +R+ M+  G++K  G SW+E+   IH F  GD SH
Sbjct: 410 PEDAGTYTVLSNIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESH 469

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+   ++K L  LI R    G++P T  VL D+  E+ E +L HHSEKLALA+G++    
Sbjct: 470 PQIVEVNKKLNQLIHRLIGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPS 529

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCG 407
              IRI KNLRIC DCH + K+ S+L  R I++RD IR+H F+ G CSCG
Sbjct: 530 EKVIRIRKNLRICGDCHVFCKLASKLENRNIVIRDPIRYHHFQDGKCSCG 579



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 115/219 (52%), Gaps = 7/219 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++V+SW +MI  + +     +AL     ML   V P+ +T++SV+  C     ++  
Sbjct: 74  MPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRAC---NGMSDV 130

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  II++ +E +  + +ALID+++K G+ + A  VFD +   D  VWN++I G A +
Sbjct: 131 RMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQN 190

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
             +  A  +F +M+    + +  T   +L AC+   L+E G +   H+  +Y     L +
Sbjct: 191 SRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI-VKYDQDLILNN 249

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A+VD+  + G +E+A  +   M  E DV+ W  ++S 
Sbjct: 250 --ALVDMYCKCGSLEDARRVFNQMK-ERDVITWSTMISG 285



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 109/279 (39%), Gaps = 60/279 (21%)

Query: 40  DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF 99
           D  T++ +I  C    A++    +   +     +    L   LI+MY K   +  A ++F
Sbjct: 12  DSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQLF 71

Query: 100 DTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS------ 153
           D + + +V  W  MIS  +   +   A  +   M    V P+  T+  +L AC+      
Sbjct: 72  DQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSDVR 131

Query: 154 --HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
             HCG+++EG +   ++RS            A++D+  + G  E+A  +   M +  D +
Sbjct: 132 MLHCGIIKEGLESDVYVRS------------ALIDVFAKLGEPEDALSVFDEM-VTGDAI 178

Query: 212 VWRAL-----------------------------------LSACRTFKRLELGEVAIVNI 236
           VW ++                                   L AC     LELG  A V+I
Sbjct: 179 VWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI 238

Query: 237 SRLMGGDYVL---LSNMYCYLKRWDTAENVREIMKKKGV 272
            +    D +L   L +MYC     + A  V   MK++ V
Sbjct: 239 VKY-DQDLILNNALVDMYCKCGSLEDARRVFNQMKERDV 276


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 176/410 (42%), Positives = 253/410 (61%), Gaps = 4/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K  VSWN+MI G  +N   ++A+R F  M    V+PD FT  S+I   A +     A W+
Sbjct: 492 KTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWI 551

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   I   ++ +  +  ALIDMY+KCG++ +A+ +F++ +   V  WNAMI G   HG  
Sbjct: 552 HGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSG 611

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  +F +M+    +P+  TFL +L+ACSH GLV+EG++YF  M+  Y ++P +EHYG 
Sbjct: 612 KVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGT 671

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---M 240
           MVDLLGRAG + EA+  I  M MEP + V+ A+L AC+  K +EL E +   I  L    
Sbjct: 672 MVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEE 731

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
           G  +VLL+N+Y     W     VR  M+KKG++K+ G S ++L   IH F +G  +H +A
Sbjct: 732 GVYHVLLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQA 791

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + I   L  LI+  K+ G++P T+ +  DV ++ K   L  HSEKLA+AYG+++T+PGT 
Sbjct: 792 KDIYARLAKLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTT 850

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           I+I KNLR+C DCH+  K+IS +  R II+RD  RFH F+ G CSCGDYW
Sbjct: 851 IQIKKNLRVCKDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 900



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 18/225 (8%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D++ VSWN+MI G+  N    EAL  F+ M+   V+    +  + ++ C  LG L+  
Sbjct: 388 MQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEG 447

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH L++   +E N  +  ALI MY KC +  +A +VFD +       WNAMI G   +
Sbjct: 448 RRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQN 507

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR----YSIQP 176
           G + DA  +F++M++ NV PDS T + ++ A +            D +++R    YSI+ 
Sbjct: 508 GSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADIS---------DPLQARWIHGYSIRL 558

Query: 177 QLEH----YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
            L+       A++D+  + G +  A  L  S   +  V+ W A++
Sbjct: 559 HLDQDVYVLTALIDMYAKCGRVSIARSLFNS-ARDRHVITWNAMI 602



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 118/243 (48%), Gaps = 15/243 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE-PDKFTFASVIYGCARLGALNH 59
           MP +D V+WN+++ G+ RN   + A+     M     E PD  T  SV+  CA   AL  
Sbjct: 286 MPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGA 345

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
              VH   +    +    +S A++D+Y KCG +  A++VFD +Q RN VS WNAMI G A
Sbjct: 346 CREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVS-WNAMIKGYA 404

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            +G A +A A+F +M    V    ++ L  L AC   G ++EGR+  + +  R  ++  +
Sbjct: 405 ENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHE-LLVRIGLESNV 463

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC----------RTFKRLEL 228
               A++ +  +    + A  +   +  +   V W A++  C          R F R++L
Sbjct: 464 NVMNALITMYCKCKRTDLAAQVFDELGYKTR-VSWNAMILGCTQNGSSEDAVRLFSRMQL 522

Query: 229 GEV 231
             V
Sbjct: 523 ENV 525



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 113/284 (39%), Gaps = 51/284 (17%)

Query: 25  ALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALI 83
           AL  F  M  +S   P   TF S++  CA    L     VH  +  + +    + + AL 
Sbjct: 208 ALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALA 267

Query: 84  DMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM-EMFNVLPDS 142
           +MY+KC +   A+ VFD +   D   WNA+++G A +GLA  A  +  +M E     PD+
Sbjct: 268 NMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDA 327

Query: 143 ITFLGLLTACS-----------------------------------HCGLVEEGRKYFDH 167
           +T + +L AC+                                    CG V+  RK FD 
Sbjct: 328 VTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDG 387

Query: 168 MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME----PDVVVWRALLSACRTF 223
           M+ R S+      + AM+      G   EA  L   M  E     DV V  A L AC   
Sbjct: 388 MQDRNSVS-----WNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVL-AALHACGEL 441

Query: 224 KRLELGEVAIVNISRLMGGDYVLLSN----MYCYLKRWDTAENV 263
             L+ G      + R+     V + N    MYC  KR D A  V
Sbjct: 442 GFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQV 485



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 8/123 (6%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY- 61
           D+ V++WN+MI G+  +     A+  F EM SS   P++ TF SV+  C+  G ++    
Sbjct: 592 DRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQE 651

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR----NDVSVWNAMISGV 117
           +  ++  +  +E        ++D+  + GK+    E +  +Q+      +SV+ AM+   
Sbjct: 652 YFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLH---EAWSFIQKMPMEPGISVYGAMLGAC 708

Query: 118 AIH 120
            +H
Sbjct: 709 KLH 711


>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 172/417 (41%), Positives = 260/417 (62%), Gaps = 7/417 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+VSWNSMI  + +    +EAL+ + +M  S V  D FT  S++  CA +GAL+  
Sbjct: 169 MPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMG 228

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H    E+++  N  +  ALIDMY+KCG +  A  +F+++ + DV  WN+MI G  +H
Sbjct: 229 VQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVH 288

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A   F  M M  V P+SITFLGLL  CSH GLV+EG +YF  M S ++++P ++H
Sbjct: 289 GRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKH 348

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDL GRAG ++EA  +I S   + D V+WR LL +C+  + +E+GE+A   +V + 
Sbjct: 349 YGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLG 408

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
            L  GD VLLS +Y   K       +R++++ +G++ + G SW+E+   +H+F   D+SH
Sbjct: 409 SLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSH 468

Query: 298 PEAQAIDKILGSLIQRTKSEGF-LPATELVLMDVSEEEK---EGNLYHHSEKLALAYGIL 353
           P+++ I + L  +I R    G+ +  + LV    S  ++   E +  +HSEKLA+AYG+ 
Sbjct: 469 PDSREIYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLA 528

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           +T  GT + I KNLR+C DCH++ K +S    R IIVRDR+RFH F+GG CSC ++W
Sbjct: 529 RTPEGTSLLIVKNLRVCRDCHNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 585



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 106/218 (48%), Gaps = 5/218 (2%)

Query: 3   DKDVVSWNSMIGGFVRNARFDE--ALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           +    +WNSMI GF ++    +  A+ F+  MLS S   PD +TF+ ++  C        
Sbjct: 67  NPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGK 126

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              VH  II    + + +L   LI  Y+  G I+ A +VF+ +   D+  WN+MIS    
Sbjct: 127 CREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQ 186

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            GL  +A  ++ +M + NV  D  T + LL++C+H G +  G +       R  ++  + 
Sbjct: 187 TGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVE-NIF 245

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              A++D+  + G +  A  +  SM  + DV  W +++
Sbjct: 246 VGNALIDMYAKCGSLASALSIFNSMP-KRDVFTWNSMI 282


>gi|77553572|gb|ABA96368.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 605

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 161/419 (38%), Positives = 255/419 (60%), Gaps = 12/419 (2%)

Query: 4   KDVVSWNSMIGGFVR---------NARFDEALRFFREMLSSKVEPDKFTFASVIYGCARL 54
            D+ +WN+++  + R          +  D  L  F  MLS  +EP++ T  +VI  C  L
Sbjct: 187 PDLPAWNALLSAYARLRARDVACATSAADAILELFVRMLSLAIEPNEITLVAVIGACGEL 246

Query: 55  GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMI 114
           GA++H  W H   +++++ +N I++ AL++MY+ CG++ +A++VF      D   +NAM+
Sbjct: 247 GAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAML 306

Query: 115 SGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI 174
            G+A+HG    A ++  +M    V  D +T L ++ AC+H GLV+EG  YFD M   + I
Sbjct: 307 HGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGI 366

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIV 234
           +P++EHYG M+D+L RAG +  A  LI  M + P+  ++R+L+ AC    +LELGE  I 
Sbjct: 367 EPRIEHYGCMIDMLSRAGRLNNAEKLIHEMLIVPNAAIYRSLIRACGIHGKLELGEKMIA 426

Query: 235 NISRLM---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFK 291
            + RL     G++VL+SN Y    RW+ A+  R+ MK  G+ K+ G S +++ GV+H+F 
Sbjct: 427 ELMRLEPDDSGNHVLISNFYARTNRWEDAKKARKEMKSMGIDKNPGSSLVDINGVLHEFL 486

Query: 292 AGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYG 351
            GD++HP ++ I  ++  +  R    G   +T   L DV EE+K   L +HSE+LA+A+ 
Sbjct: 487 VGDKTHPASKEIYTMVEEIETRLIECGRRSSTSSALFDVEEEDKADTLSYHSERLAIAFA 546

Query: 352 ILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           ++ ++PG  IRI KNLR+C DCH   K++SR+  R I++RDR RFH F  G+CSCGD+W
Sbjct: 547 LIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 605



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 9/94 (9%)

Query: 77  ILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG--------VAIHGLAADAS- 127
           +L AAL+ ++++CG+I   + VFD +   D+  WNA++S         VA    AADA  
Sbjct: 159 VLGAALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLRARDVACATSAADAIL 218

Query: 128 AIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG 161
            +F +M    + P+ IT + ++ AC   G V  G
Sbjct: 219 ELFVRMLSLAIEPNEITLVAVIGACGELGAVSHG 252



 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 2/121 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY- 61
           D+D   +N+M+ G   +     AL     M  + V  D  T  SV+  CA  G ++    
Sbjct: 296 DRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLD 355

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMA-KEVFDTVQRNDVSVWNAMISGVAIH 120
           +   + IE  IE        +IDM S+ G++  A K + + +   + +++ ++I    IH
Sbjct: 356 YFDRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEMLIVPNAAIYRSLIRACGIH 415

Query: 121 G 121
           G
Sbjct: 416 G 416


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 178/411 (43%), Positives = 251/411 (61%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K++V+WN+MI G+V N+R ++ L+ FR ML   + P+    +S + GC+ L AL     
Sbjct: 246 NKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQ 305

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H ++ +  +  +     +LI MY KCG++  A ++F+ +++ DV  WNAMISG A HG 
Sbjct: 306 IHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGN 365

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A  A  +F +M    + PD ITF+ +L AC+H GLV  G  YF+ M   Y ++PQ +HY 
Sbjct: 366 ADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYT 425

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            MVDLLGRAG +EEA  LI SM   P   V+  LL ACR  K +EL E A   ++ ++  
Sbjct: 426 CMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQ 485

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
               YV L+N+Y    RW+    VR+ MK+  V K  G SW+E+   +H F++ DR HPE
Sbjct: 486 NAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPE 545

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
             +I K L  L ++ K  G+ P  E  L +V EE+KE  L  HSEKLA+A+G +K   G+
Sbjct: 546 LDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGS 605

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           +I++ KNLRIC DCH  IK IS + +R IIVRD  RFH F+ G CSCGDYW
Sbjct: 606 QIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 107/221 (48%), Gaps = 13/221 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD  SWN+MI G+ R    ++A    RE+  S +E ++ ++ ++I G    G L  A
Sbjct: 150 MPFKDAASWNTMITGYARRGEMEKA----RELFYSMMEKNEVSWNAMISGYIECGDLEKA 205

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD--TVQRNDVSVWNAMISGVA 118
                +   + +    +   A+I  Y K  K+++A+ +F   TV +N V+ WNAMISG  
Sbjct: 206 SHFFKVAPVRGV----VAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVT-WNAMISGYV 260

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            +    D   +F  M    + P+S      L  CS    ++ GR+    + S+ ++   +
Sbjct: 261 ENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQ-IHQIVSKSTLCNDV 319

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               +++ +  + G + +A+ L   M  + DVV W A++S 
Sbjct: 320 TALTSLISMYCKCGELGDAWKLFEVMK-KKDVVAWNAMISG 359



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 4/123 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALN-- 58
           M  KDVV+WN+MI G+ ++   D+AL  FREM+ +K+ PD  TF +V+  C   G +N  
Sbjct: 345 MKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIG 404

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGV 117
            AY+  +++ + K+E        ++D+  + GK++ A ++  ++  R   +V+  ++   
Sbjct: 405 MAYF-ESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGAC 463

Query: 118 AIH 120
            +H
Sbjct: 464 RVH 466



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 83/197 (42%), Gaps = 15/197 (7%)

Query: 42  FTFASVIYGCARLGALNHAYWV-HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD 100
           F    +I  C R G ++ A  V H +  +  I  N    + LI +     ++  A ++FD
Sbjct: 62  FPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWN----SLLIGISKDPSRMMEAHQLFD 117

Query: 101 TVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE 160
            +   D   +N M+S    +     A + F +M       D+ ++  ++T  +  G +E+
Sbjct: 118 EIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMP----FKDAASWNTMITGYARRGEMEK 173

Query: 161 GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
            R+ F  M  +  +      + AM+      G +E+A        +   VV W A+++  
Sbjct: 174 ARELFYSMMEKNEVS-----WNAMISGYIECGDLEKASHFFKVAPVR-GVVAWTAMITGY 227

Query: 221 RTFKRLELGEVAIVNIS 237
              K++EL E    +++
Sbjct: 228 MKAKKVELAEAMFKDMT 244


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 172/413 (41%), Positives = 254/413 (61%), Gaps = 7/413 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++ V+W+++I GF +N R  EAL  FRE+ +  ++P  +   S +  CA +G L   
Sbjct: 269 MPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLG 328

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I+ +++E   IL  A++DMYSKCG ++ A+++F+ +   D+ +WNA+I+    H
Sbjct: 329 KSIHGFIL-RRLEWQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTH 387

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA A+F ++    + PD  TF  LL+A SH GLVEEG+ +FD M   + I+P  +H
Sbjct: 388 GCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKH 447

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  +VDLL R+G +EEA  ++ SM  EP + +W  LLS C   K+LELGE     I  L 
Sbjct: 448 YVCIVDLLARSGLVEEANDMLASMQTEPTIAIWVILLSGCLNNKKLELGETIAKKILELR 507

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D     L+SN+Y   K+WD    +R++MK  G +K  G S +E+ G  H F   D+SH
Sbjct: 508 PEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVKGTRHAFVMEDQSH 567

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I K++  L    +  G++P TE V  D+ E++    L +HSE+LA+A+G+L TSP
Sbjct: 568 PQHREILKMVAKLNSEMRKLGYVPRTEFVYHDLDEDQL---LSYHSERLAIAFGLLNTSP 624

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT + I KNLR+C DCH  IK IS+++ R I+VRD  RFH F+ G CSCGDYW
Sbjct: 625 GTRLVIIKNLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 677



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 115/223 (51%), Gaps = 5/223 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD V+W++M+ GFV   R  EAL  +  M    V  D+     VI  C   G     
Sbjct: 168 MPRKDRVAWSTMVAGFVTAGRPVEALAMYSRMREHGVSDDEVVMVGVIQACMSTGNARIG 227

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
             VH  ++   + ++ + + +L+ MY+K G + +A +VF  +  RNDV+ W+A+ISG A 
Sbjct: 228 ASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVT-WSALISGFAQ 286

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G A +A  +F +++   + P S   +  L AC+  G ++ G+     +  R   Q  L 
Sbjct: 287 NGRAVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFILRRLEWQCILG 346

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRT 222
              A++D+  + G +E A  L   ++   D+V+W A+++ C T
Sbjct: 347 --TAVLDMYSKCGSLESARKLFNKLSSR-DLVLWNAIIACCGT 386



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 3/210 (1%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           WN ++    R      ALR FR + SS   P+  TF   +  CARLG L+ A  V     
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFRALPSS-ARPNSTTFTLTLTACARLGDLDAAESVRVRAF 134

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
                 +  + +AL+ +YS+CG ++ A  VFD + R D   W+ M++G    G   +A A
Sbjct: 135 AAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALA 194

Query: 129 IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLL 188
           ++++M    V  D +  +G++ AC   G    G      +  R+ ++  +    ++V + 
Sbjct: 195 MYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLL-RHCMRMDVVTTTSLVSMY 253

Query: 189 GRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
            + GH++ A  +   M    D V W AL+S
Sbjct: 254 AKNGHLDVACQVFRMMPYRND-VTWSALIS 282


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 178/413 (43%), Positives = 251/413 (60%), Gaps = 5/413 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D+V WNS+I GF ++     A+  F  M  +    ++ T  SV+  C  +  L   
Sbjct: 229 MVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAG 288

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++  K + + IL  AL+DMY KCG ++ A  +F  + + DV  W+ M+SG+A +
Sbjct: 289 RQVHAHVL--KYDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQN 346

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G + +A  +F  M+   V P+ +T +G+L ACSH GLVE+G  YF  M+  + IQP+ EH
Sbjct: 347 GKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPEREH 406

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           +  MVDLLGRAG ++EA   I  M++EPD V+WR LL ACR  K   L   A   I +L 
Sbjct: 407 HNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYAAREILKLE 466

Query: 241 GGDY---VLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D    VLLSN Y  L++W  AE   + M+ +G+RK  G+SW+EL   +H F AGD SH
Sbjct: 467 PDDQGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKRVHVFIAGDLSH 526

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P +  I + L  LI R KS G++P TE VL D+  E+KE  L +HSEK+A+ +G +    
Sbjct: 527 PCSDTIIQELNRLIGRIKSLGYVPQTEFVLQDLPTEQKEDLLKYHSEKMAIVFGTMHAVD 586

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KNLRIC DCH++ K++S+   RVI++RD +RFH F+ G CSCGDYW
Sbjct: 587 GKPIRIMKNLRICGDCHAFAKLVSKSEGRVIVIRDPVRFHHFQDGACSCGDYW 639



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 110/220 (50%), Gaps = 8/220 (3%)

Query: 1   MPDKDVVSWNSMIGGFVR-NARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           MP ++VV+W +++      + R  EALRF   M    V P+ +TF+SV+  C   G L  
Sbjct: 130 MPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACTTPGMLTA 189

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              VH   ++  ++ +  + ++LID Y K G +   + VFD +   D+ VWN++I+G A 
Sbjct: 190 ---VHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQ 246

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            G    A  +F +M+      +  T   +L AC+   ++E GR+   H+         L 
Sbjct: 247 SGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHV---LKYDRDLI 303

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            + A++D+  + G +E+A  L   M  + DV+ W  ++S 
Sbjct: 304 LHNALLDMYCKCGSLEDADALFHRMP-QRDVISWSTMVSG 342



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 40  DKFTFASVIYGCARLGALNHAYWVHNLI-----IEKKIELNFILSAALIDMYSKCGKIQM 94
           D  +   ++  C R G  +H   +H  +     +         +S +L  MY+K G +  
Sbjct: 63  DPVSLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDD 122

Query: 95  AKEVFDTVQRNDVSVWNAMISGVA-IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
           A  +FD +   +V  W  +++ +A   G   +A      M    V P++ TF  +L AC+
Sbjct: 123 ALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACT 182

Query: 154 HCGLV 158
             G++
Sbjct: 183 TPGML 187


>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
           [Vitis vinifera]
          Length = 603

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 172/417 (41%), Positives = 260/417 (62%), Gaps = 7/417 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+VSWNSMI  + +    +EAL+ + +M  S V  D FT  S++  CA +GAL+  
Sbjct: 187 MPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMG 246

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H    E+++  N  +  ALIDMY+KCG +  A  +F+++ + DV  WN+MI G  +H
Sbjct: 247 VQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVH 306

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A   F  M M  V P+SITFLGLL  CSH GLV+EG +YF  M S ++++P ++H
Sbjct: 307 GRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKH 366

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDL GRAG ++EA  +I S   + D V+WR LL +C+  + +E+GE+A   +V + 
Sbjct: 367 YGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLG 426

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
            L  GD VLLS +Y   K       +R++++ +G++ + G SW+E+   +H+F   D+SH
Sbjct: 427 SLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSH 486

Query: 298 PEAQAIDKILGSLIQRTKSEGF-LPATELVLMDVSEEEK---EGNLYHHSEKLALAYGIL 353
           P+++ I + L  +I R    G+ +  + LV    S  ++   E +  +HSEKLA+AYG+ 
Sbjct: 487 PDSREIYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLA 546

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           +T  GT + I KNLR+C DCH++ K +S    R IIVRDR+RFH F+GG CSC ++W
Sbjct: 547 RTPEGTSLLIVKNLRVCRDCHNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 603



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 106/218 (48%), Gaps = 5/218 (2%)

Query: 3   DKDVVSWNSMIGGFVRNARFDE--ALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           +    +WNSMI GF ++    +  A+ F+  MLS S   PD +TF+ ++  C        
Sbjct: 85  NPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGK 144

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              VH  II    + + +L   LI  Y+  G I+ A +VF+ +   D+  WN+MIS    
Sbjct: 145 CREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQ 204

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            GL  +A  ++ +M + NV  D  T + LL++C+H G +  G +       R  ++  + 
Sbjct: 205 TGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVE-NIF 263

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              A++D+  + G +  A  +  SM  + DV  W +++
Sbjct: 264 VGNALIDMYAKCGSLASALSIFNSMP-KRDVFTWNSMI 300


>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
          Length = 611

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 173/416 (41%), Positives = 250/416 (60%), Gaps = 6/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML--SSKVEPDKFTFASVIYGCARLGALN 58
           MP +D V+WN +I  + RN R  +AL+ F EM    S+ EPD  T   ++  C+ LGAL+
Sbjct: 196 MPVRDAVAWNVLITCYARNRRTKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGALD 255

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               V     E        +  +LI MY +CG +  A  VF    +  V  W AMISG+A
Sbjct: 256 FGEQVWAYAEEHGYGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLA 315

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            +G   DA ++F +M   +V PD  TF G+L+ACSH GLV+EG ++FD MR  Y ++P +
Sbjct: 316 ANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNV 375

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITS-MTMEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
            HYG +VDL+GRAG ++EAY  +T+ M + PD  +WR LL ACR    ++LGE  I N+ 
Sbjct: 376 RHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVIGNLI 435

Query: 238 RL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294
            L     GDYVLL N Y  +  W     +R++M+++G++ + G + +E  G +H+F A D
Sbjct: 436 ELKAQQAGDYVLLLNTYAAVGEWSKVSEIRKLMQEEGIQTTPGCTTVEHNGTVHEFIADD 495

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
            +HP    I + L  + ++ +  G++P     L D+  E KE  L +HSEKLA+A+ +L 
Sbjct: 496 DAHPRKVEIYENLSEIYKQLRIAGYVPNVSSELHDLDSEGKESALTYHSEKLAIAFALLV 555

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T     IR++KNLR+C DCH++ KM S + RR++IVRDR RFH F+GG CSC DYW
Sbjct: 556 TPQHRPIRLAKNLRVCVDCHNFTKMFSAIYRRIVIVRDRTRFHHFQGGKCSCNDYW 611



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 98/198 (49%), Gaps = 9/198 (4%)

Query: 24  EALRFFREMLSSKVEPDKFTFASVIYG-CARLGALNHAYWVHNLIIEKKIELNFILSAAL 82
           +ALRF   + +     + FT A ++   C+    L HA  +H  ++ +    + +L+ +L
Sbjct: 121 DALRFLCRVRALGRRGNAFTLAILLKPRCS----LAHARQLHANVVAEGHLRDALLATSL 176

Query: 83  IDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFN--VLP 140
           +  Y+  G    A+++FD +   D   WN +I+  A +    DA  +F +M   +    P
Sbjct: 177 MRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEMRGKDSESEP 236

Query: 141 DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL 200
           D +T + LL ACS  G ++ G + + +    +    +L+   +++ +  R G +++AY +
Sbjct: 237 DDVTCILLLQACSSLGALDFGEQVWAYA-EEHGYGGELKVRNSLITMYLRCGCVDKAYRV 295

Query: 201 ITSMTMEPDVVVWRALLS 218
             S T +  VV W A++S
Sbjct: 296 F-SGTPQKSVVTWTAMIS 312


>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
 gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
          Length = 597

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 173/416 (41%), Positives = 250/416 (60%), Gaps = 6/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML--SSKVEPDKFTFASVIYGCARLGALN 58
           MP +D V+WN +I  + RN R  +AL+ F EM    S+ EPD  T   ++  C+ LGAL+
Sbjct: 182 MPVRDAVAWNVLITCYARNRRTKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGALD 241

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               V     E        +  +LI MY +CG +  A  VF    +  V  W AMISG+A
Sbjct: 242 FGEQVWAYAEEHGYGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLA 301

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            +G   DA ++F +M   +V PD  TF G+L+ACSH GLV+EG ++FD MR  Y ++P +
Sbjct: 302 ANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNV 361

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITS-MTMEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
            HYG +VDL+GRAG ++EAY  +T+ M + PD  +WR LL ACR    ++LGE  I N+ 
Sbjct: 362 RHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVIGNLI 421

Query: 238 RL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294
            L     GDYVLL N Y  +  W     +R++M+++G++ + G + +E  G +H+F A D
Sbjct: 422 ELKAQQAGDYVLLLNTYAAVGEWSKVSEIRKLMQEEGIQTTPGCTTVEHNGTVHEFIADD 481

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
            +HP    I + L  + ++ +  G++P     L D+  E KE  L +HSEKLA+A+ +L 
Sbjct: 482 DAHPRKVEIYENLSEIYKQLRIAGYVPNVSSELHDLDSEGKESALTYHSEKLAIAFALLV 541

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T     IR++KNLR+C DCH++ KM S + RR++IVRDR RFH F+GG CSC DYW
Sbjct: 542 TPQHRPIRLAKNLRVCVDCHNFTKMFSAIYRRIVIVRDRTRFHHFQGGKCSCNDYW 597



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 98/199 (49%), Gaps = 9/199 (4%)

Query: 24  EALRFFREMLSSKVEPDKFTFASVIYG-CARLGALNHAYWVHNLIIEKKIELNFILSAAL 82
           +ALRF   + +     + FT A ++   C+    L HA  +H  ++ +    + +L+ +L
Sbjct: 107 DALRFLCRVRALGRRGNAFTLAILLKPRCS----LAHARQLHANVVAEGHLRDALLATSL 162

Query: 83  IDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFN--VLP 140
           +  Y+  G    A+++FD +   D   WN +I+  A +    DA  +F +M   +    P
Sbjct: 163 MRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEMRGKDSESEP 222

Query: 141 DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL 200
           D +T + LL ACS  G ++ G + + +    +    +L+   +++ +  R G +++AY +
Sbjct: 223 DDVTCILLLQACSSLGALDFGEQVWAYA-EEHGYGGELKVRNSLITMYLRCGCVDKAYRV 281

Query: 201 ITSMTMEPDVVVWRALLSA 219
             S T +  VV W A++S 
Sbjct: 282 F-SGTPQKSVVTWTAMISG 299


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 171/413 (41%), Positives = 251/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVVSW +++GG+    +  E+   F++ML   VE +K T+  V+  C+   AL   
Sbjct: 408 MPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWG 467

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++  I  +  ++ AL+ MY KCG ++ A  V + +   DV  WN +I G+A +
Sbjct: 468 KEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQN 527

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A   F  M+   + P++ TF+ +++AC    LVEEGR+ F  MR  Y I P  +H
Sbjct: 528 GRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKH 587

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  MVD+L RAGH+ EA  +I +M  +P   +W ALL+ACR    +E+GE A     +L 
Sbjct: 588 YACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLE 647

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YV LS +Y     W     +R++MK++GV+K  G+SW+E+AG +H F AGD+SH
Sbjct: 648 PQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSH 707

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + I   L +L ++ KS G++P T  V+ D+ +E KE  + HHSEKLA+AYG++ T P
Sbjct: 708 PRTEEIYSELEALTKQIKSLGYVPDTRFVMHDLDQEGKERAVCHHSEKLAIAYGLISTPP 767

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T IR+SKNLR+C DCH+  K IS++  R II RD  RFH F+ G CSCGDYW
Sbjct: 768 ETPIRVSKNLRVCTDCHTATKFISKITGREIIARDAHRFHHFKNGECSCGDYW 820



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 137/325 (42%), Gaps = 52/325 (16%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K VVSWN MI G+       EA   F  M    +EPDKFTF S++  C+   ALN    
Sbjct: 107 NKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGRE 166

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  ++E  +  N  +  ALI MY+KCG ++ A+ VFD +   D   W  +    A  G 
Sbjct: 167 VHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGY 226

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACS----------------------------- 153
           A ++   +  M    V P  IT++ +L+AC                              
Sbjct: 227 AQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTA 286

Query: 154 ------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME 207
                  CG V++ R+ F+ + +R  I      +  M+  L  +G +EEA+G+   M  E
Sbjct: 287 LTKMYIKCGAVKDAREVFECLPNRDVIA-----WNTMIGGLVDSGQLEEAHGMFHRMLKE 341

Query: 208 ---PDVVVWRALLSACRTFKRLELG-EVAIVNISRLMGGDYVL---LSNMYCYLKRWDTA 260
              PD V + A+LSAC     L  G E+    +   +  D      L NMY        A
Sbjct: 342 CVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDA 401

Query: 261 ENVREIMKKKGVRKSQGKSWLELAG 285
             V + M K+ V      SW  L G
Sbjct: 402 RQVFDRMPKRDV-----VSWTALVG 421



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 116/218 (53%), Gaps = 4/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D VSW ++ G +  +    E+L+ +  ML   V P + T+ +V+  C  L AL   
Sbjct: 206 MASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKG 265

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I+E +   +  +S AL  MY KCG ++ A+EVF+ +   DV  WN MI G+   
Sbjct: 266 KQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDS 325

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLE 179
           G   +A  +F +M    V PD +T+L +L+AC+  G +  G++   H R+ +  +   + 
Sbjct: 326 GQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEI--HARAVKDGLVSDVR 383

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              A++++  +AG +++A  +   M  + DVV W AL+
Sbjct: 384 FGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTALV 420



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 118/217 (54%), Gaps = 2/217 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P++DV++WN+MIGG V + + +EA   F  ML   V PD+ T+ +++  CAR G L   
Sbjct: 307 LPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACG 366

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++  +  +     ALI+MYSK G ++ A++VFD + + DV  W A++ G A  
Sbjct: 367 KEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADC 426

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   ++ + F KM    V  + IT++ +L ACS+   ++ G++    +  +  I   L  
Sbjct: 427 GQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEV-VKAGIFADLAV 485

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             A++ +  + G +E+A  +   M+   DVV W  L+
Sbjct: 486 ANALMSMYFKCGSVEDAIRVSEGMSTR-DVVTWNTLI 521



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 93/229 (40%), Gaps = 43/229 (18%)

Query: 40  DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF 99
           D + +  ++  C +   L     VH  I+   ++ N  +   L+ +Y  CG +  A+ +F
Sbjct: 43  DSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLF 102

Query: 100 DTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS------ 153
           D      V  WN MISG A  GL  +A  +FT M+   + PD  TF+ +L+ACS      
Sbjct: 103 DKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALN 162

Query: 154 -----------------------------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
                                         CG V + R+ FD M SR  +      +  +
Sbjct: 163 WGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVS-----WTTL 217

Query: 185 VDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELGE 230
                 +G+ +E+     +M  E   P  + +  +LSAC +   LE G+
Sbjct: 218 TGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGK 266


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 177/414 (42%), Positives = 259/414 (62%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + +KD V W +M+ G  +N + ++AL  FREML   V PD FT +SV+  CARL +L   
Sbjct: 282 IKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQG 341

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   +   ++ + ++S+AL+DMYSKCG+   A  VF  +   +V  WN+MI G A +
Sbjct: 342 QAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQN 401

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A A++ +M   N+ PD+ITF+G+L+AC H GLVE G+ YF  +   + + P  +H
Sbjct: 402 GKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDH 461

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  M++LLGRAG++++A  LI SMT EP+ ++W  LLS CR    +  GE+A  ++  L 
Sbjct: 462 YSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELD 521

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y++LSN+Y    RW     VR +MK   ++K    SW+E+   +H+F A DR+H
Sbjct: 522 PHNAGPYIMLSNIYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTH 581

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            E + I + L  LI++ +  GF P T LVL DV EEEK  ++ +HSEKLALA+ ++K   
Sbjct: 582 SETEQIYEELNRLIKKLQESGFTPDTNLVLHDVVEEEKFDSICYHSEKLALAFWLIKKPH 641

Query: 358 G-TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G T IRI KN+R+C DCH ++K +S+++RR II+RD  RFH F  G CSC D W
Sbjct: 642 GRTPIRIMKNIRVCGDCHVFMKFVSKIIRRPIILRDINRFHHFIEGRCSCKDSW 695



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 123/250 (49%), Gaps = 9/250 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M   D VS+N++I GF  N    +AL FF  M     E   +T  SV++ C++L  +   
Sbjct: 115 MSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRG 174

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I+   +  +  +  AL +MY+KCG +  A+ +FD +   +V  WN+MISG   +
Sbjct: 175 KQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQN 234

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G     + +F +M+   ++PD +T   +L+A   CG ++E  K F  ++ +  +      
Sbjct: 235 GQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVC----- 289

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELGEVAIVNIS 237
           +  M+    + G  E+A  L   M +E   PD     +++S+C     L  G+ A+   +
Sbjct: 290 WTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQ-AVHGKA 348

Query: 238 RLMGGDYVLL 247
            + G D+ LL
Sbjct: 349 VIFGVDHDLL 358



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 103/218 (47%), Gaps = 39/218 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +K+VVSWNSMI G+++N + +   + F EM SS + PD+ T ++              
Sbjct: 216 MVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISN-------------- 261

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                           ILSA     Y +CG I  A + F  ++  D   W  M+ G A +
Sbjct: 262 ----------------ILSA-----YFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQN 300

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR-YSIQPQLE 179
           G   DA  +F +M + NV PD+ T   ++++C+    + +G+    H ++  + +   L 
Sbjct: 301 GKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAV--HGKAVIFGVDHDLL 358

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              A+VD+  + G   +A+ +   M +  +V+ W +++
Sbjct: 359 VSSALVDMYSKCGETADAWIVFKRM-LTRNVISWNSMI 395



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 72/146 (49%), Gaps = 14/146 (9%)

Query: 77  ILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMF 136
            L   L+ +Y+K G +  A+++FD + R DV  WNAM+S  +  G   D  A+F +M + 
Sbjct: 59  FLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVH 118

Query: 137 NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR------SRYSIQPQLEHYGAMVDLLGR 190
               D++++  ++   S  G   +  ++F  M+      + Y+    L     ++D+  +
Sbjct: 119 ----DAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDI--K 172

Query: 191 AGHIEEAYGLITSMTMEPDVVVWRAL 216
            G  ++ +G I + ++   V VW AL
Sbjct: 173 RG--KQIHGRIVATSLGESVFVWNAL 196


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 177/414 (42%), Positives = 252/414 (60%), Gaps = 10/414 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD+VSW SMI   V N    EAL  F  +  + ++PD     S +   A L +L     +
Sbjct: 513 KDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEI 572

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I K   L   ++++L+DMY+ CG ++ ++++F +V++ D+ +W +MI+   +HG  
Sbjct: 573 HGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCG 632

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A A+F KM   NV+PD ITFL LL ACSH GL+ EG+++F+ M+  Y ++P  EHY  
Sbjct: 633 NKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYAC 692

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
           MVDLL R+  +EEAY  + +M ++P   +W ALL AC      ELGE+A   ++      
Sbjct: 693 MVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKELLQSDTEN 752

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G Y L+SN++    RW+  E VR  MK  G++K+ G SW+E+   IH F A D+SHP+ 
Sbjct: 753 SGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQT 812

Query: 301 QAIDKILGSLIQRT----KSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
              D I   L Q T    K  G++  T+ V  +VSEEEK   LY HSE+LAL YG+L T 
Sbjct: 813 ---DDIYLKLAQFTKLLEKKGGYIAQTKFVFHNVSEEEKTQMLYGHSERLALGYGLLVTP 869

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            GT IRI+KNLRIC DCH++ K+ S + +R ++VRD  RFH FE GLCSCGD+W
Sbjct: 870 KGTCIRITKNLRICDDCHTFFKIASEVSQRPLVVRDANRFHHFERGLCSCGDFW 923



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 110/217 (50%), Gaps = 3/217 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D VSWN+++ G V+N  + +AL +FR+M +S  +PD+ +  ++I    R G L     V
Sbjct: 312 RDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEV 371

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   I   ++ N  +   L+DMY+KC  ++     F+ +   D+  W  +I+G A +   
Sbjct: 372 HAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFH 431

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F K+++  +  D +    +L ACS        R+   ++  R      L++  A
Sbjct: 432 LEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQN--A 489

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
           +V++ G  GHI+ A     S+    D+V W ++++ C
Sbjct: 490 IVNVYGEVGHIDYARRAFESIR-SKDIVSWTSMITCC 525



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 107/222 (48%), Gaps = 6/222 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++ + SWN+++G FV + ++ EA+  +++M    V  D  TF SV+  C  LG     
Sbjct: 105 MSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLG 164

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV--QRNDVSVWNAMISGVA 118
             +H + ++        +  ALI MY KCG +  A+ +FD +  ++ D   WN++IS   
Sbjct: 165 AEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHV 224

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQ 177
             G   +A ++F +M+   V  ++ TF+  L        V+ G       ++S +     
Sbjct: 225 AEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVY 284

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           + +  A++ +  + G +E+A  +  SM    D V W  LLS 
Sbjct: 285 VAN--ALIAMYAKCGRMEDAGRVFESMLCR-DYVSWNTLLSG 323



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 103/219 (47%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D VSWNS+I   V      EAL  FR M    V  + +TF + + G      +   
Sbjct: 208 MEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLG 267

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++     +  ++ ALI MY+KCG+++ A  VF+++   D   WN ++SG+  +
Sbjct: 268 MGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQN 327

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            L +DA   F  M+     PD ++ L L+ A    G + +G++   +   R  +   ++ 
Sbjct: 328 ELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYA-IRNGLDSNMQI 386

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              +VD+  +   + +  G       E D++ W  +++ 
Sbjct: 387 GNTLVDMYAKCCCV-KYMGHAFECMHEKDLISWTTIIAG 424



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 4/170 (2%)

Query: 51  CARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVW 110
           C    AL     +H L++  K  L+  L+  L+ MY KCG ++ A +VFD +    +  W
Sbjct: 56  CVAAKALPQGQQLHALLL--KSHLSAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSW 113

Query: 111 NAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS 170
           NA++      G   +A  ++  M +  V  D+ TF  +L AC   G    G +    +  
Sbjct: 114 NALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAE-IHGVAV 172

Query: 171 RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP-DVVVWRALLSA 219
           +      +    A++ + G+ G +  A  L   + ME  D V W +++SA
Sbjct: 173 KCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISA 222


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 168/413 (40%), Positives = 252/413 (61%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KDV+SWN+MIGG+ +N+  +EAL  F EM   + +PD  T A ++  CA L AL+  
Sbjct: 515 MKKKDVISWNTMIGGYTKNSLPNEALTLFAEM-QRESKPDGTTVACILPACASLAALDKG 573

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   +      +  ++ A++DMY KCG + +A+ +FD +   D+  W  MI+G  +H
Sbjct: 574 REIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMH 633

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  ++A   F +M M  + PD ++F+ +L ACSH GL++EG K F+ M+    I+P LEH
Sbjct: 634 GYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEH 693

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  MVDLL R G++ +A+  I +M ++PD  +W ALL  CR    ++L E     I  L 
Sbjct: 694 YACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELE 753

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLL+N+Y   ++W+  + +R+ + ++G++K+ G SW+E+ G I+ F AGD S 
Sbjct: 754 PENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSK 813

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+A+ I+ +L  L  + K EG+ P T   L++  E EKE  L  HSEKLA+A+G+L   P
Sbjct: 814 PQAKKIELLLKRLRSKMKEEGYSPKTAYALLNADEREKEVALCGHSEKLAMAFGMLNLPP 873

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR++KNLR+C DCH   K +S+   R II+RD  RFH F+ G CSC  YW
Sbjct: 874 GKTIRVTKNLRVCGDCHEMAKFMSKSASREIILRDSSRFHHFKDGSCSCRGYW 926



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 117/220 (53%), Gaps = 5/220 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +K VVSW SMI G+VR    D A++ F EM S  V PD +   S++  CA  G L   
Sbjct: 414 MDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSG 473

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ I E  +E N  +S AL DMY+KCG ++ A +VF  +++ DV  WN MI G   +
Sbjct: 474 KIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKN 533

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
            L  +A  +F +M+     PD  T   +L AC+    +++GR+   + +R+ YS    + 
Sbjct: 534 SLPNEALTLFAEMQR-ESKPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVT 592

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +  A+VD+  + G +  A  L   M    D+V W  +++ 
Sbjct: 593 N--AVVDMYVKCGLLVLARSLF-DMIPNKDLVSWTVMIAG 629



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 117/222 (52%), Gaps = 11/222 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALN-- 58
           + D+DV+SWNSMI G+V+N   D  +  F +ML   V+ D  T  +V   CA +G L   
Sbjct: 312 LTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLG 371

Query: 59  ---HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
              H+Y +    +++++  N      L+DMYSKCG +  A  VF+ +    V  W +MI+
Sbjct: 372 KVLHSYSIKAATLDREVRFN----NTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMIT 427

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           G    GL+  A  +F +M+   V+PD      +L AC+  G ++ G+   D++R   +++
Sbjct: 428 GYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIREN-NLE 486

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
                  A+ D+  + G +++A+ + + M  + DV+ W  ++
Sbjct: 487 TNSFVSNALTDMYAKCGSMKDAHDVFSHMK-KKDVISWNTMI 527



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 106/219 (48%), Gaps = 1/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + +  +  WN MI  +  +  + E++  F++ML   ++P+ +TF+S++   A +  +   
Sbjct: 211 LSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEG 270

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH LI +        +  +LI  Y    K++ A+++FD +   DV  WN+MISG   +
Sbjct: 271 RQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKN 330

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL      IF KM +F V  D  T + +  AC++ G +  G+    +     ++  ++  
Sbjct: 331 GLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRF 390

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              ++D+  + G +  A  +   M  E  VV W ++++ 
Sbjct: 391 NNTLLDMYSKCGDLNSAIRVFERMD-EKTVVSWTSMITG 428



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 63/124 (50%)

Query: 40  DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF 99
           D   + S++  CA   ++     V ++I    + ++ IL   L+ MY KCG ++  + VF
Sbjct: 149 DLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVF 208

Query: 100 DTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVE 159
           D +  + + +WN MIS  +  G   ++  +F +M    + P+S TF  +L   +    VE
Sbjct: 209 DKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVE 268

Query: 160 EGRK 163
           EGR+
Sbjct: 269 EGRQ 272


>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 175/426 (41%), Positives = 260/426 (61%), Gaps = 18/426 (4%)

Query: 3   DKDVVSWNSMIGGFVRNAR-------FD------EALRFFREMLSSKVEPDKFTFASVIY 49
           + D+ +WN ++  + R++        FD      E+L  FR+M    + P++ T  ++I 
Sbjct: 315 EPDLATWNVILNAYARSSSYHSYSNSFDDADFSLESLYLFRDMQVIGIRPNEVTIVALIS 374

Query: 50  GCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS- 108
            C+ LGA++  +WVH  ++  KI++N  +  A +DMYSKCG + +A +VFD +  ND   
Sbjct: 375 ACSNLGAVSQGFWVHCFVLRNKIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDS 434

Query: 109 -VWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH 167
             + AMI G A+HG    A  ++ KM+   ++PDS TF+  + ACSH GLVEEG + F  
Sbjct: 435 FCYTAMIGGFAVHGYGNQALELYRKMKFKGLVPDSATFVVTMFACSHVGLVEEGLEIFKS 494

Query: 168 MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
           M+  + ++P+LEHYG ++DLLGRAG ++EA   +  M M+P+ V+WR+LL A R    L 
Sbjct: 495 MKEVHGVEPKLEHYGCLIDLLGRAGRLKEAEEWLADMPMKPNAVLWRSLLGAARIHGNLG 554

Query: 228 LGEVAIVNISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELA 284
           +GEVA+  +  L     G+YVLLSNMY  + R +  + VR++MK  GV K  G S +E+ 
Sbjct: 555 VGEVALTKLIELEPETSGNYVLLSNMYASVGRVNDVKRVRKLMKHHGVNKLPGFSLVEIK 614

Query: 285 GVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSE 344
           G +H+F  GDRSHP ++ I   +  +  R +  G    T   L D+ EE+KEG L +HSE
Sbjct: 615 GAMHEFLTGDRSHPFSKEIYLKIAEINSRLEEYGHKARTSEALFDLEEEDKEGVLSYHSE 674

Query: 345 KLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLC 404
           +LA+A+ ++ +     IRI KNLR+C DCH++ K+IS    R IIVRDR RFH F+ G C
Sbjct: 675 RLAIAFALIASPSSLAIRIIKNLRVCGDCHAFTKLISVAYHREIIVRDRNRFHHFKDGSC 734

Query: 405 SCGDYW 410
           SC DYW
Sbjct: 735 SCLDYW 740



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 89/182 (48%), Gaps = 27/182 (14%)

Query: 3   DKDVVSWNSMIGGFVRNARFDE---ALRFFREMLSSK-VEPDKFTFASVIYGCA------ 52
           +  +  +N++I   +     ++   A   + ++L++K ++P+ FTF S+   C       
Sbjct: 208 NPTIFLYNTLISSLINQTNQNQIHLAFSLYNKILTNKNLQPNSFTFPSLFKACCSNQSWF 267

Query: 53  RLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA 112
             G L H    H L   +    NF+  A+L++ Y+K GK+ +++ +FD +   D++ WN 
Sbjct: 268 HYGPLLHT---HVLKFLQPPFDNFV-QASLLNFYAKYGKMCVSRYIFDRINEPDLATWNV 323

Query: 113 MISGVAIH-------------GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVE 159
           +++  A                 + ++  +F  M++  + P+ +T + L++ACS+ G V 
Sbjct: 324 ILNAYARSSSYHSYSNSFDDADFSLESLYLFRDMQVIGIRPNEVTIVALISACSNLGAVS 383

Query: 160 EG 161
           +G
Sbjct: 384 QG 385


>gi|115473599|ref|NP_001060398.1| Os07g0636900 [Oryza sativa Japonica Group]
 gi|113611934|dbj|BAF22312.1| Os07g0636900, partial [Oryza sativa Japonica Group]
          Length = 352

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 166/351 (47%), Positives = 232/351 (66%), Gaps = 3/351 (0%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  +   +IEL+  L  ALIDMY+KCG I+ A+ VFD +   DV  W++MI G+A HGL
Sbjct: 2   VHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGL 61

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             ++ ++F+KM    + P+ +TF+G+L AC+H GLV EG+KYF  M   + I+P +EHYG
Sbjct: 62  GHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYG 121

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVN---ISRL 239
            MVDLLGR+GH+EEA  LI SMT EPD ++WRALL ACR  K +E+ E A+     +  L
Sbjct: 122 CMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVLDPL 181

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             G YVLLSN+Y     W+    +R+ +++  +++  G+S +E    IH+F +GDR HP 
Sbjct: 182 GDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFVSGDRLHPR 241

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           ++ I ++L  ++ R K  G+ P T LVL D+ E+ KE +L  HSEKLA+A+ +L T   +
Sbjct: 242 SKEIYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQSKERSLAEHSEKLAIAFALLTTPARS 301

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI+KNLR C DCHS +K+IS +  R +IVRDR RFH F  G CSC DYW
Sbjct: 302 TIRITKNLRACEDCHSAMKLISLVYDRKLIVRDRNRFHHFSEGQCSCKDYW 352



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 2/143 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KDV +W+SMI G   +    E+L  F +M+S  ++P+  TF  V+  C  +G ++  
Sbjct: 41  MPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEG 100

Query: 61  -YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             +  ++     IE        ++D+  + G ++ A+++  ++    D  +W A++    
Sbjct: 101 KKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACR 160

Query: 119 IHGLAADASAIFTKMEMFNVLPD 141
           IH     A     K+ + + L D
Sbjct: 161 IHKNVEIAEEAMAKLRVLDPLGD 183


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 178/414 (42%), Positives = 253/414 (61%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D  +W++MI  + +N    EAL  FREML   V P+  +  S++  CA L  L++ 
Sbjct: 293 MCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYG 352

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++    +++    +ALI MY KCG +  AK VF T +  D+ +WN+MI+G A H
Sbjct: 353 REVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQH 412

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL   A  IF  M +  + PD IT++G LTACS+ G V+EGR+ F+ M    SI+P  EH
Sbjct: 413 GLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEH 472

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MVDLLGR+G +EEA+ LI +M +EPD V+W AL+ ACR  +  E+ E A   +  L 
Sbjct: 473 YSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELE 532

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD-RS 296
            G+   YVLLS++Y  + RW+ A  +R+ +  + + KS G SW+E    +H F +GD  +
Sbjct: 533 PGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLA 592

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HPE  AI +IL  L       G+      VL D+ EE+K  +L +HSE+ A+AYG+LK  
Sbjct: 593 HPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIP 652

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  IR+ KNLR+C DCHS IK+I+++  R II+RD  RFH F+ G CSC DYW
Sbjct: 653 EGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 100/237 (42%), Gaps = 42/237 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKV----------------------- 37
           MP +   S+N+++ G+ RN   D AL  FR M S  +                       
Sbjct: 43  MPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAA 102

Query: 38  ------EPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK 91
                  P   +F S++ G  R G L  A  +   + E+      +L   L+D     G+
Sbjct: 103 LASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLD----AGR 158

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           +  A+ +FD +   DV  W AM+SG    G   +A A+F +M   NV    +++  +++ 
Sbjct: 159 VNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV----VSWTAMISG 214

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
            +  G V   RK F+ M  R  +      + AM+    +AGH+E+A  L  +M   P
Sbjct: 215 YAQNGEVNLARKLFEVMPERNEVS-----WTAMLVGYIQAGHVEDAAELFNAMPEHP 266



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 115/234 (49%), Gaps = 15/234 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++VVSW +MI G+ +N   + A + F  M     E ++ ++ +++ G  + G +  A
Sbjct: 200 MPKRNVVSWTAMISGYAQNGEVNLARKLFEVM----PERNEVSWTAMLVGYIQAGHVEDA 255

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             + N + E  +        A++  + + G +  AK VF+ +   D   W+AMI     +
Sbjct: 256 AELFNAMPEHPVAA----CNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQN 311

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A + F +M    V P+  + + +LT C+   +++ GR+    M  R S    +  
Sbjct: 312 EFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAML-RCSFDMDVFA 370

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEP-DVVVWRALLSACRTFKRLELGEVAI 233
             A++ +  + G++++A  +    T EP D+V+W ++++    + +  LGE A+
Sbjct: 371 VSALITMYIKCGNLDKAKRVFH--TFEPKDIVMWNSMITG---YAQHGLGEQAL 419


>gi|326502116|dbj|BAK06550.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 542

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 176/423 (41%), Positives = 265/423 (62%), Gaps = 13/423 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           +P K +VSWN+ +     NA    AL  FREM   + + PD +T  SV+  CA  GAL+ 
Sbjct: 120 IPAKSLVSWNTAVDALASNADHLGALDLFREMQRDTGLAPDAYTLQSVLGACAGAGALSL 179

Query: 60  AYWVHNLIIEK-----KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMI 114
             + H L++ +      +  + +++ +L+D+Y KCG +++A++VFD +   DV+ WN  I
Sbjct: 180 GVYAHALLLRELGGHGDVSRDVLINNSLVDLYGKCGAVELARQVFDRMPERDVTSWNVAI 239

Query: 115 SGVAIHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
             +A HG   ++  +F +M  + NV+P++ITF+ +L+AC+H G+VEEGR+YFD M   Y 
Sbjct: 240 LTLANHGCVRESVELFDRMTRVENVVPNAITFVAVLSACNHGGMVEEGRRYFDMMVGEYR 299

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA-CRTFKRLELGE-- 230
           I+P++EHYG MVD+L RAG IEEA  +++ M   PD ++WR+LL A CR    LEL E  
Sbjct: 300 IRPRIEHYGCMVDILARAGFIEEALDVVSGMNCRPDAIIWRSLLDACCRQNAGLELSEAM 359

Query: 231 --VAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIH 288
             +A+      + G YVLLS +Y + ++W+    VR +M  +G++K  G S +E+ G++H
Sbjct: 360 AKLALDVPDDAVSGVYVLLSRVYAFAQKWNDVGMVRRLMSDEGLKKEPGFSSIEMDGLVH 419

Query: 289 QFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLP-ATELVLMDVSEEEKEGNLYHHSEKLA 347
           QF AGD SHP+++ I   L  + QR  S G+ P  +E  ++   +  K   L  HSE+LA
Sbjct: 420 QFVAGDTSHPQSEEIYAKLDEIEQRLASSGYKPDLSEARMVAGMDHTKGAALRLHSERLA 479

Query: 348 LAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCG 407
           +++G+LK + G  IRI KNLR+C DCH+  K+I+ L    IIVRDRIRFH F+ G CSC 
Sbjct: 480 ISFGLLKGTAGAPIRILKNLRVCKDCHTISKLITGLYGVEIIVRDRIRFHHFKDGACSCK 539

Query: 408 DYW 410
           DYW
Sbjct: 540 DYW 542



 Score = 42.7 bits (99), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 6/142 (4%)

Query: 77  ILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMF 136
           +++ +L+ +Y+ CG    A  +F  +    +  WN  +  +A +     A  +F +M+  
Sbjct: 95  VVANSLLHLYASCGLPDAALALFRCIPAKSLVSWNTAVDALASNADHLGALDLFREMQRD 154

Query: 137 NVL-PDSITFLGLLTACSHCGLVEEG----RKYFDHMRSRYSIQPQLEHYGAMVDLLGRA 191
             L PD+ T   +L AC+  G +  G          +     +   +    ++VDL G+ 
Sbjct: 155 TGLAPDAYTLQSVLGACAGAGALSLGVYAHALLLRELGGHGDVSRDVLINNSLVDLYGKC 214

Query: 192 GHIEEAYGLITSMTMEPDVVVW 213
           G +E A  +   M  E DV  W
Sbjct: 215 GAVELARQVFDRMP-ERDVTSW 235


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 177/415 (42%), Positives = 245/415 (59%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++++ +WN+ +   V   R+D+AL  F E     +EP  F  +SV+  CA L  L   
Sbjct: 169 MPERNIATWNAYLSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVG 228

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH L ++  +  N  + +AL+DMY KCG I+ A+  FD +   ++  WNAMI G A  
Sbjct: 229 KSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQ 288

Query: 121 GLAADASAIFTKMEMFN--VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           G A  A  +F +M   +  V P+ +TF+ +L+ACS  G V  G + F+ MR RY I+P  
Sbjct: 289 GQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGA 348

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNI-- 236
           EHY  +VDLLGRAG +E+AY  I  M + P V VW ALL A + F + ELG+VA  N+  
Sbjct: 349 EHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFE 408

Query: 237 -SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
              L  G++VLLSNM+    RW+ A  VR+ MK  G++K  G SW+     +H F+A D 
Sbjct: 409 LDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDT 468

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SH     I  +L  L    ++ G++P T   L D+ EEEK   +++HSEK+ALA+G++  
Sbjct: 469 SHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAFGLISI 528

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             G  IRI+KNLRIC DCHS IK IS ++ R IIVRD   FHRF    CSC DYW
Sbjct: 529 PAGVPIRITKNLRICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 583



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 103/216 (47%), Gaps = 2/216 (0%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P++ VV+W ++I G V+N RF  AL  F  M    ++P+ FTF         L +     
Sbjct: 69  PNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGK 128

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            VH L ++     +  +  +  DMYSK G  + A+++FD +   +++ WNA +S   + G
Sbjct: 129 QVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEG 188

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              DA   F +     + P       +L+AC+   ++E G K    +  +  +   +   
Sbjct: 189 RYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVG-KSVHTLAVKACVVGNIFVG 247

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
            A+VD+ G+ G IE+A      M  E ++V W A++
Sbjct: 248 SALVDMYGKCGSIEDAERAFDEMP-ERNLVTWNAMI 282



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 80/224 (35%), Gaps = 47/224 (20%)

Query: 45  ASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR 104
           ++V   C+RLG   HA  +  L       L   +   L++MYSK  +   A+ +      
Sbjct: 15  SAVSTQCSRLGRAAHAQIIKTL----DNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPN 70

Query: 105 NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC------------ 152
             V  W A+I+G   +G    A   F+ M   ++ P+  TF     A             
Sbjct: 71  RSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQV 130

Query: 153 -----------------------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD--- 186
                                  S  GL EE RK FD M  R      +  + A +    
Sbjct: 131 HALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPER-----NIATWNAYLSNSV 185

Query: 187 LLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE 230
           L GR      A+       +EP   +  ++LSAC     LE+G+
Sbjct: 186 LEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGK 229


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 179/405 (44%), Positives = 258/405 (63%), Gaps = 11/405 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + +KDV+SWN++IGG+     + EAL  F+EML S   P+  T  S++  CA LGA++  
Sbjct: 268 LSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG 327

Query: 61  YWVHNLIIEKKIELNFILSAA-----LIDMYSKCGKIQMAKEVFDTVQRN-DVSVWNAMI 114
            W+H + I+KK++   + +A+     LIDMY+KCG I  A +V D+   N  +S WNAMI
Sbjct: 328 RWIH-VYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMI 386

Query: 115 SGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI 174
            G A+HG A  A  IF++M    + PD ITF+GLL+ACSH G+++ GR  F  MR  Y+I
Sbjct: 387 FGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNI 446

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV--- 231
            P+LEHYG M+DLLG +G  +EA  +I +M MEPD V+W +LL AC+    LELGE    
Sbjct: 447 TPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAK 506

Query: 232 AIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKS-QGKSWLELAGVIHQF 290
            ++ I     G YVLLSN+Y    +W+    +R ++  KG++K   G S +E+  V+H+F
Sbjct: 507 KLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDSVVHEF 566

Query: 291 KAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAY 350
             GD+ HP+ + I  +L  +    +  GF+P T  VL ++ EE KEG L HHSEKLA+A+
Sbjct: 567 IIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAF 626

Query: 351 GILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIR 395
           G++ T PGT++ I KNLR+C +CH   K+IS++ +R II RDR R
Sbjct: 627 GLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTR 671



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 134/291 (46%), Gaps = 42/291 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KDVVSWN+MI G+     + +AL  F+EM+ + V+PD+ T A+V+  CA+ G++   
Sbjct: 167 IPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELG 226

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ I +     N  +  ALID+YSKCG+++ A E+ + +   DV  WN +I G    
Sbjct: 227 RQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHM 286

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---KYFD----------- 166
            L  +A  +F +M      P+ +T L +L AC+H G ++ GR    Y D           
Sbjct: 287 NLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNA 346

Query: 167 ---------------------HMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
                                 +    +    L  + AM+      G    A+ + + M 
Sbjct: 347 SSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMR 406

Query: 206 ---MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCY 253
              +EPD + +  LLSAC     L+LG     NI R M  DY +   +  Y
Sbjct: 407 KNGIEPDDITFVGLLSACSHSGMLDLGR----NIFRSMRQDYNITPKLEHY 453



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 114/248 (45%), Gaps = 33/248 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+ + + WN M  G   ++    AL+ +  M+S  + P+ FTF  ++  CA+       
Sbjct: 35  IPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAKSKTFKEG 94

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGK----------------------------- 91
             +H  +++   +L+  +  +LI MY++ G+                             
Sbjct: 95  QQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITGYASR 154

Query: 92  --IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
             I+ A+++FD +   DV  WNAMISG A  G    A  +F +M   NV PD  T   ++
Sbjct: 155 GYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVV 214

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
           +AC+  G +E GR+    +   +     L+   A++DL  + G +E A  L+  ++ + D
Sbjct: 215 SACAQSGSIELGRQVHSWIND-HGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNK-D 272

Query: 210 VVVWRALL 217
           V+ W  L+
Sbjct: 273 VISWNTLI 280



 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 2/128 (1%)

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           +  A  VF+T+   +  +WN M  G A+      A  ++  M    +LP+  TF  LL +
Sbjct: 25  LPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKS 84

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           C+     +EG++   H+  +      L  + +++ +  + G +E+A  +    +   DVV
Sbjct: 85  CAKSKTFKEGQQIHGHVL-KLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHR-DVV 142

Query: 212 VWRALLSA 219
            + AL++ 
Sbjct: 143 SYTALITG 150


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 170/406 (41%), Positives = 246/406 (60%), Gaps = 3/406 (0%)

Query: 8   SWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLI 67
           +W++M+ G+V+N R +EAL FFR ML   V   +F   SV   CA  G +     VH  +
Sbjct: 329 AWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQGRQVHGFV 388

Query: 68  IEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADAS 127
            +     +  L++A++DMYSK G ++ A  +F + Q  +V++W  M+   A HG    A 
Sbjct: 389 EKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYASHGQGRMAL 448

Query: 128 AIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDL 187
            IF++M+   ++P+ IT + +L+ACSH GLV +G  YF+ M+  Y I P  EHY  MVDL
Sbjct: 449 EIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIVPNTEHYNCMVDL 508

Query: 188 LGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDY 244
            GRAG +++A   I    +  + VVW+ LLSACR  K +E  ++A   +V + +   G Y
Sbjct: 509 YGRAGLLDKAKNFIEENKISHEAVVWKTLLSACRLHKHIEYAQLASEKLVQLEQYDAGSY 568

Query: 245 VLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAID 304
           VL+SNMY    +W     +R  MK++ VRK  G+SW+ L  V+H+F A D SHP +  I 
Sbjct: 569 VLMSNMYATNNKWLDTFKLRSSMKERRVRKQPGQSWIHLKNVVHRFVALDTSHPRSAEIY 628

Query: 305 KILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIRIS 364
             L  L++R K  G+   T+LV+ D+ EE++E +L  HSEKLA+A+GI+ T  GT +RI 
Sbjct: 629 AYLEKLMERLKEMGYTSRTDLVVHDIEEEQRETSLKFHSEKLAIAFGIISTPVGTALRIF 688

Query: 365 KNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           KNLR+C DCH  IK I+R   R I+VRD  RFH F+ G CSC D+W
Sbjct: 689 KNLRVCEDCHEAIKFITRATDREIVVRDLYRFHHFKDGQCSCEDFW 734



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 110/222 (49%), Gaps = 11/222 (4%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +DV SWN+++ G +R+    EAL   ++M+ + V    +T++ V      L + +    +
Sbjct: 221 RDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSMVFALAGLLSSRDLGRQL 280

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD---TVQRNDVSVWNAMISGVAIH 120
           H  ++   +E +  +  +L+DMY KCG+++ A  +FD       +    W+ M++G   +
Sbjct: 281 HGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQN 340

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK---YFDHMRSRYSIQPQ 177
           G   +A   F +M    V         + +AC++ G+VE+GR+   + + +  R+     
Sbjct: 341 GREEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQGRQVHGFVEKLGHRFDAPLA 400

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                A+VD+  ++G +E+A  +  S   + +V +W  +L +
Sbjct: 401 ----SAIVDMYSKSGSLEDACRIFRSAQTK-NVALWTTMLCS 437



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 2/150 (1%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLS--SKVEPDKFTFASVIYGCARLGALNH 59
           P + + +W S+I G  R  R  + +R F EML       P+ F  A V+  CA LG +  
Sbjct: 85  PTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRCCAGLGDVES 144

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  I+   +  + +L  A++DMY+KCG    A+  F  + + D + WN +I     
Sbjct: 145 GRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWNIVIRACLQ 204

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLL 149
            G    A+ +F +  + +V   +    GL+
Sbjct: 205 DGDLVGATQLFDESSLRDVSSWNTIVSGLM 234



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 4/131 (3%)

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM--EMFNVLPDSITFLGLL 149
           +  A  VFD      +  W ++ISG A  G  AD    F +M  E     P++    G+L
Sbjct: 74  LHNAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVL 133

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
             C+  G VE GR+    +  R  + P +    A++D+  + G    A     +M  + D
Sbjct: 134 RCCAGLGDVESGRRIHGWIL-RSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMA-QKD 191

Query: 210 VVVWRALLSAC 220
              W  ++ AC
Sbjct: 192 ATSWNIVIRAC 202


>gi|414591914|tpg|DAA42485.1| TPA: pentatricopeptide repeat protein PPR986-12 [Zea mays]
          Length = 548

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 173/424 (40%), Positives = 265/424 (62%), Gaps = 14/424 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE--PDKFTFASVIYGCARLGALN 58
           +PD+ +VSWN+ +     N     AL  FREM   + +  PD +T  SV+  CA  GAL+
Sbjct: 125 VPDRSLVSWNTAVDALAGNGDHLAALDLFREMQRDRPDLAPDAYTVQSVLGACAATGALS 184

Query: 59  HAYWVHNLIIEK-----KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAM 113
              + H L++ +      +  + +++ +L+D+Y KCG +++A++VFD +   D++ WNAM
Sbjct: 185 LGLYAHALLLRELGGASAVSRDVLINNSLVDLYGKCGAVELARQVFDRMSERDLASWNAM 244

Query: 114 ISGVAIHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY 172
           +  +A HG   D+  +F +M  +  ++P++ITF+ +L+AC+H GLV+EGR+YF  M S +
Sbjct: 245 VLALANHGRVQDSLDLFDRMTRVEGLVPNAITFVAVLSACNHGGLVDEGRRYFAAMVSEH 304

Query: 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA-CRTFKRLELGE- 230
            I+P++EHYG MVD+L RAG IEEA  ++  M   PD ++WR+LL A C+    LEL E 
Sbjct: 305 GIRPRIEHYGCMVDILARAGFIEEALDVVAGMNCRPDSIIWRSLLDACCKRNAGLELSEA 364

Query: 231 ---VAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVI 287
              +A+      + G YVLLS +Y   +RW+    +R++M ++G +K  G S +E+ G +
Sbjct: 365 MAKLALDVPDDAVSGVYVLLSRVYASAQRWNDVGMIRQLMSQEGFKKEPGFSSIEMDGSV 424

Query: 288 HQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPA-TELVLMDVSEEEKEGNLYHHSEKL 346
           HQF AGD SHP+++ I   L  + QR  S G+ P  +E  ++   +  K   L  HSE+L
Sbjct: 425 HQFVAGDTSHPQSEEIYVKLDEIQQRLTSAGYKPDLSEAPMVADIDRTKGATLRLHSERL 484

Query: 347 ALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSC 406
           A+++G+L  +PG  IRI KNLR+C DCH+  K+IS+L    IIVRDRIRFH F+ G CSC
Sbjct: 485 AISFGLLNATPGAPIRILKNLRVCKDCHTISKLISKLYNVEIIVRDRIRFHHFKDGSCSC 544

Query: 407 GDYW 410
            DYW
Sbjct: 545 KDYW 548



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 51/190 (26%)

Query: 77  ILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME-- 134
           +++ +L+  Y+ CG+   A  VF  V    +  WN  +  +A +G    A  +F +M+  
Sbjct: 100 VVANSLVHFYASCGRPGAALAVFRRVPDRSLVSWNTAVDALAGNGDHLAALDLFREMQRD 159

Query: 135 MFNVLPDSITFLGLLTACS----------------------------------------H 154
             ++ PD+ T   +L AC+                                         
Sbjct: 160 RPDLAPDAYTVQSVLGACAATGALSLGLYAHALLLRELGGASAVSRDVLINNSLVDLYGK 219

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT----MEPDV 210
           CG VE  R+ FD M  R      L  + AMV  L   G ++++  L   MT    + P+ 
Sbjct: 220 CGAVELARQVFDRMSER-----DLASWNAMVLALANHGRVQDSLDLFDRMTRVEGLVPNA 274

Query: 211 VVWRALLSAC 220
           + + A+LSAC
Sbjct: 275 ITFVAVLSAC 284


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 174/413 (42%), Positives = 242/413 (58%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K+++SW  MI G  +    +EAL+FF  M     EP  + FA  I  C+ LG+L H 
Sbjct: 385 MPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHG 444

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  ++    E +     ALI MY++CG +  A  +F  +   D   WNAMI+ +  H
Sbjct: 445 RQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQH 504

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +M    +LPD I+FL +++ACSH GLV+EGRKYFD M + Y + P  EH
Sbjct: 505 GQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEH 564

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  ++DLL RAG   EA  ++ SM  EP   +W ALL+ CR    ++LG  A   +  L 
Sbjct: 565 YARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELK 624

Query: 241 ---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSNMY    +W+    VR++M+ +GV+K  G SW+E+   +H F  GD +H
Sbjct: 625 PQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDANH 684

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE + I   L  L+   +  G++P T+ VL DV  + KE  L  HSEKLA+AYG +K   
Sbjct: 685 PEVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESDLKEHELSTHSEKLAVAYGFMKLPH 744

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  +R+ KNLRIC DCH+  K +S+++ R I+VRD  RFH F  G CSCGDYW
Sbjct: 745 GATVRVFKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 797



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 119/249 (47%), Gaps = 39/249 (15%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVI-----YGCARLGALNHAY 61
           V+WN+MI G+     + EA   FR+M+ SK++ D+FTF SVI      GC RLG   HAY
Sbjct: 255 VAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAY 314

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWN---------- 111
           ++   +     ++   ++ ALI  Y KCGK+ +A+E+F+ +   D+  WN          
Sbjct: 315 FLKT-VANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVR 373

Query: 112 ---------------------AMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150
                                 MISG+A  G A +A   F +M++    P    F G + 
Sbjct: 374 CMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAII 433

Query: 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
           +CS  G ++ GR+    +  RY  +  L    A++ +  R G ++ A+ L  +M    D 
Sbjct: 434 SCSVLGSLKHGRQLHAQV-VRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPC-VDA 491

Query: 211 VVWRALLSA 219
           + W A+++A
Sbjct: 492 ISWNAMIAA 500



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 104/260 (40%), Gaps = 45/260 (17%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGAL-NHAYW 62
           +D V +N+MI  +  N     A+  F +M      PD +TF SV+   A +     H   
Sbjct: 110 RDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQ 169

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGK---------IQMAKEVFDT------------ 101
           +H  +++        +  ALI  Y KC           +  A+++FD             
Sbjct: 170 LHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTI 229

Query: 102 ----VQRNDVSV---------------WNAMISGVAIHGLAADASAIFTKMEMFNVLPDS 142
               V+ ND+                 WNAMISG A  GL  +A  +F KM M  +  D 
Sbjct: 230 ITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDE 289

Query: 143 ITFLGLLTACSHCGLVEEGRK---YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199
            TF  +++ C++ G    G++   YF    +  +    +    A++    + G ++ A  
Sbjct: 290 FTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQE 349

Query: 200 LITSMTMEPDVVVWRALLSA 219
           +   M  E D+V W  +LS 
Sbjct: 350 IFNKMP-ERDLVSWNIILSG 368


>gi|218186365|gb|EEC68792.1| hypothetical protein OsI_37341 [Oryza sativa Indica Group]
          Length = 960

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 162/419 (38%), Positives = 256/419 (61%), Gaps = 12/419 (2%)

Query: 4   KDVVSWNSMIGGFVR---------NARFDEALRFFREMLSSKVEPDKFTFASVIYGCARL 54
            D+ +WN+++  + R          +  D  L  F  MLS  +EP++ T  +VI  C  L
Sbjct: 542 PDLPAWNALLSAYARLCARDVACATSAADAILELFVRMLSLAIEPNEITLVAVIGACGEL 601

Query: 55  GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMI 114
           GA++H  W H   +++++ +N I++ AL++MY+ CG++ +A++VF  V   D   +NAM+
Sbjct: 602 GAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAVSDRDTRCYNAML 661

Query: 115 SGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI 174
            G+A+HG    A ++  +M    V  D +T L ++ AC+H GLV+EG  YFD M   + I
Sbjct: 662 HGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGI 721

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIV 234
           +P++EHYG M+D+L RAG +  A  LI  M + P+  ++R+L+ AC    +LELGE  I 
Sbjct: 722 EPRIEHYGCMIDMLSRAGQLNNAEKLIHEMLIVPNAAIYRSLIRACGIHGKLELGEKMIA 781

Query: 235 NISRLM---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFK 291
            + RL     G++VL+SN Y    RW+ A+  R+ MK  G+ K+ G S +++ GV+H+F 
Sbjct: 782 ELMRLEPDDSGNHVLISNFYARTNRWEDAKKARKEMKSMGIDKNPGSSLVDINGVLHEFL 841

Query: 292 AGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYG 351
            GD++HP ++ I  ++  +  R    G   +T   L DV EE+K   L +HSE+LA+A+ 
Sbjct: 842 VGDKTHPASKEIYTMVEEIETRLIECGRRSSTSSALFDVEEEDKADTLSYHSERLAIAFA 901

Query: 352 ILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           ++ ++PG  IRI KNLR+C DCH   K++SR+  R I++RDR RFH F  G+CSCGD+W
Sbjct: 902 LIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 960



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 9/94 (9%)

Query: 77  ILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG--------VAIHGLAADAS- 127
           +L AAL+ ++++CG+I   + VFD +   D+  WNA++S         VA    AADA  
Sbjct: 514 VLGAALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLCARDVACATSAADAIL 573

Query: 128 AIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG 161
            +F +M    + P+ IT + ++ AC   G V  G
Sbjct: 574 ELFVRMLSLAIEPNEITLVAVIGACGELGAVSHG 607



 Score = 45.4 bits (106), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 2/121 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY- 61
           D+D   +N+M+ G   +     AL     M  + V  D  T  SV+  CA  G ++    
Sbjct: 651 DRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLD 710

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMA-KEVFDTVQRNDVSVWNAMISGVAIH 120
           +   + IE  IE        +IDM S+ G++  A K + + +   + +++ ++I    IH
Sbjct: 711 YFDRMEIEFGIEPRIEHYGCMIDMLSRAGQLNNAEKLIHEMLIVPNAAIYRSLIRACGIH 770

Query: 121 G 121
           G
Sbjct: 771 G 771


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 165/413 (39%), Positives = 255/413 (61%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD++SWN+MIGG+ +N+  +EAL  F +M+  +++PD  T A ++  CA L +L+  
Sbjct: 160 MPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVL-EMKPDGTTLACILPACASLASLDRG 218

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  I+      +  ++ AL+DMY KCG   +A+ +FD +   D+  W  MI+G  +H
Sbjct: 219 KEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMH 278

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A   F +M    + PD ++F+ +L ACSH GL++EG ++F+ M+   +++P+LEH
Sbjct: 279 GFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEH 338

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  +VDLL R+G +  AY  I SM +EPD  +W ALLS CR    ++L E    ++  L 
Sbjct: 339 YACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELE 398

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLL+N Y   ++W+  + +R+ + ++G++K+ G SW+E+   +H F AG+ SH
Sbjct: 399 PENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSH 458

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+A+ I+ +L  L  + K EG+ P T   L++    +KE  L  HSEKLA+A+GIL   P
Sbjct: 459 PQAKKIEVLLKRLRSKMKEEGYFPKTRYALINADSLQKETALCGHSEKLAMAFGILNLPP 518

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IR+SKNLR+C DCH   K IS+ L R I++RD  RFH F+ G+C C  +W
Sbjct: 519 ARTIRVSKNLRVCGDCHEMAKFISKTLGREIVLRDSNRFHHFKDGVCCCRGFW 571



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 116/220 (52%), Gaps = 5/220 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  + VV+W S+I  + R    DEA+R F EM    V PD FT  +V++ CA  G+L + 
Sbjct: 59  MSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENG 118

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VHN I E  ++ N  +  AL+DMY+KCG ++ A  VF  +   D+  WN MI G + +
Sbjct: 119 KDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKN 178

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
            L  +A ++F  M +  + PD  T   +L AC+    ++ G++   H +R+ +    Q+ 
Sbjct: 179 SLPNEALSLFGDM-VLEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVA 237

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +  A+VD+  + G +     L+  M    D++ W  +++ 
Sbjct: 238 N--ALVDMYVKCG-VPVLARLLFDMIPTKDLITWTVMIAG 274



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 2/172 (1%)

Query: 46  SVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN 105
           S++  CA  G ++    VH   ++  +         L+DMY+KCG +  A  VFD +   
Sbjct: 3   SILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVR 62

Query: 106 DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYF 165
            V  W ++I+  A  GL+ +A  +F +M+   V PD  T   +L AC+  G +E G+   
Sbjct: 63  TVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVH 122

Query: 166 DHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           +++R    +Q  +    A++D+  + G +E+A  +   M ++ D++ W  ++
Sbjct: 123 NYIREN-DMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVK-DIISWNTMI 172


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 178/414 (42%), Positives = 253/414 (61%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D  +W++MI  + +N    EAL  FREML   V P+  +  S++  CA L  L++ 
Sbjct: 293 MCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYG 352

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++    +++    +ALI MY KCG +  AK VF T +  D+ +WN+MI+G A H
Sbjct: 353 REVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQH 412

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL   A  IF  M +  + PD IT++G LTACS+ G V+EGR+ F+ M    SI+P  EH
Sbjct: 413 GLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEH 472

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MVDLLGR+G +EEA+ LI +M +EPD V+W AL+ ACR  +  E+ E A   +  L 
Sbjct: 473 YSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELE 532

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD-RS 296
            G+   YVLLS++Y  + RW+ A  +R+ +  + + KS G SW+E    +H F +GD  +
Sbjct: 533 PGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLA 592

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HPE  AI +IL  L       G+      VL D+ EE+K  +L +HSE+ A+AYG+LK  
Sbjct: 593 HPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIP 652

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  IR+ KNLR+C DCHS IK+I+++  R II+RD  RFH F+ G CSC DYW
Sbjct: 653 EGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 100/237 (42%), Gaps = 42/237 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKV----------------------- 37
           MP +   S+N+++ G+ RN   D AL  FR M S  +                       
Sbjct: 43  MPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAA 102

Query: 38  ------EPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK 91
                  P   +F S++ G  R G L  A  +   + E+      +L   L+D     G+
Sbjct: 103 LASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLD----AGR 158

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           +  A+ +FD +   DV  W AM+SG    G   +A A+F +M   NV    +++  +++ 
Sbjct: 159 VNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV----VSWTAMISG 214

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
            +  G V   RK F+ M  R  +      + AM+    +AGH+E+A  L  +M   P
Sbjct: 215 YAQNGEVNLARKLFEVMPERNEVS-----WTAMLVGYIQAGHVEDAAELFNAMPEHP 266



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 115/234 (49%), Gaps = 15/234 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++VVSW +MI G+ +N   + A + F  M     E ++ ++ +++ G  + G +  A
Sbjct: 200 MPKRNVVSWTAMISGYAQNGEVNLARKLFEVM----PERNEVSWTAMLVGYIQAGHVEDA 255

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             + N + E  +        A++  + + G +  AK VF+ +   D   W+AMI     +
Sbjct: 256 AELFNAMPEHPVAA----CNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQN 311

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A + F +M    V P+  + + +LT C+   +++ GR+    M  R S    +  
Sbjct: 312 EFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAML-RCSFDMDVFA 370

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEP-DVVVWRALLSACRTFKRLELGEVAI 233
             A++ +  + G++++A  +    T EP D+V+W ++++    + +  LGE A+
Sbjct: 371 VSALITMYIKCGNLDKAKRVFH--TFEPKDIVMWNSMITG---YAQHGLGEQAL 419


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 168/413 (40%), Positives = 251/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  D V+W +MI G + N   + A   F +M    V PD+FT A++    + L AL   
Sbjct: 578 IPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQG 637

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++     +  +  +L+DMY+KCG I  A  +F  ++  +++ WNAM+ G+A H
Sbjct: 638 RQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQH 697

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +   +F +M+   + PD +TF+G+L+ACSH GLV E  K+   M   Y I+P++EH
Sbjct: 698 GEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEH 757

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE---VAIVNIS 237
           Y  + D LGRAG +++A  LI SM+ME    ++R LL+ACR     E G+     ++ + 
Sbjct: 758 YSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELE 817

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
            L    YVLLSNMY    +WD  +  R +MK   V+K  G SW+E+   IH F   DRS+
Sbjct: 818 PLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSN 877

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            + + I + +  +I+  K EG++P T+  L+DV EEEKE  LY+HSEKLA+A+G+L T P
Sbjct: 878 RQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPP 937

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T IR+ KNLR+C DCH+ +K I+++  R I++RD  RFHRF+ G+CSCGDYW
Sbjct: 938 STPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 111/214 (51%), Gaps = 4/214 (1%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D+V+WN+M+ G+ ++    + L+ F  M       D FT A+V   C  L A+N    VH
Sbjct: 481 DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVH 540

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
              I+   +L+  +S+ ++DMY KCG +  A+  FD++   D   W  MISG   +G   
Sbjct: 541 AYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEE 600

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLEHYGA 183
            A  +F++M +  VLPD  T   L  A S    +E+GR+ + + ++   +  P +    +
Sbjct: 601 RAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVG--TS 658

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           +VD+  + G I++AY L   + M  ++  W A+L
Sbjct: 659 LVDMYAKCGSIDDAYCLFKRIEM-MNITAWNAML 691



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 81/149 (54%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +++  N  +  ++ + ++   L+ F +M+ S VE D+ TF  ++    ++ +L     VH
Sbjct: 279 EIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVH 338

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
            + ++  ++L   +S +LI+MY K  K   A+ VFD +   D+  WN++I+G+A +GL  
Sbjct: 339 CMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEV 398

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACS 153
           +A  +F ++    + PD  T   +L A S
Sbjct: 399 EAVCLFMQLLRCGLKPDQYTMTSVLKAAS 427



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 115/247 (46%), Gaps = 15/247 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG-ALNH 59
           M ++D++SWNS+I G  +N    EA+  F ++L   ++PD++T  SV+   + L   L+ 
Sbjct: 376 MSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSL 435

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
           +  VH   I+     +  +S ALID YS+   ++ A+ +F+     D+  WNAM++G   
Sbjct: 436 SKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQ 494

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQL 178
                    +F  M       D  T   +   C     + +G++   + ++S Y +   +
Sbjct: 495 SHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWV 554

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE----VAIV 234
                ++D+  + G +  A     S+ + PD V W  ++S C     +E GE      + 
Sbjct: 555 S--SGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTMISGC-----IENGEEERAFHVF 606

Query: 235 NISRLMG 241
           +  RLMG
Sbjct: 607 SQMRLMG 613



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 126/282 (44%), Gaps = 14/282 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNA-----RFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG 55
           MPD+D+VSWNS++  + +++        +A   FR +    V   + T + ++  C   G
Sbjct: 100 MPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSG 159

Query: 56  ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
            +  +   H    +  ++ +  ++ AL+++Y K GK++  K +F+ +   DV +WN M+ 
Sbjct: 160 YVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLK 219

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
                G   +A  + +      + P+ IT L LL   S         K F +     S+ 
Sbjct: 220 AYLEMGFKEEAIDLSSAFHSSGLNPNEIT-LRLLARISGDDSDAGQVKSFANGNDASSVS 278

Query: 176 PQLEHYGAMVDLL--GRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI 233
             +     + + L  G+   + + +  +    +E D V +  +L+       L LG+  +
Sbjct: 279 EIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQ-QV 337

Query: 234 VNISRLMGGDYVL-----LSNMYCYLKRWDTAENVREIMKKK 270
             ++  +G D +L     L NMYC L+++  A  V + M ++
Sbjct: 338 HCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSER 379



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 7/143 (4%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA-----DASAIFTKMEMF 136
           LI MYSKCG +  A+ VFD +   D+  WN++++  A            A  +F  +   
Sbjct: 80  LISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQD 139

Query: 137 NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196
            V    +T   +L  C H G V     +  +   +  +       GA+V++  + G ++E
Sbjct: 140 VVYTSRMTLSPMLKLCLHSGYVWASESFHGYA-CKIGLDGDEFVAGALVNIYLKFGKVKE 198

Query: 197 AYGLITSMTMEPDVVVWRALLSA 219
              L   M    DVV+W  +L A
Sbjct: 199 GKVLFEEMPYR-DVVLWNLMLKA 220


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 180/413 (43%), Positives = 253/413 (61%), Gaps = 5/413 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D+V WNS+I GF ++     A+  F  M  +    ++ T  SV+  C  +  L   
Sbjct: 240 MVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAG 299

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++  K E + IL  AL+DMY KCG ++ A+ +F  + + DV  W+ MISG+A +
Sbjct: 300 RQVHAHVL--KYERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQN 357

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G +A+A  +F  M+   V P+ IT +G+L ACSH GLVE+G  YF  M+  + IQP+ EH
Sbjct: 358 GKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREH 417

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           +  MVDLLGRAG ++EA   I  M +EPD V+WR LL ACR  K   L   A   I +L 
Sbjct: 418 HNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYAAREILKLE 477

Query: 241 GGDY---VLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D    VLLSN Y  L++W  AE   + M+ +G++K  G+SW+EL   +H F AGD SH
Sbjct: 478 PDDQGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHVHVFIAGDLSH 537

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P +  I + L  LI R  + G++P TE VL D++ E+KE  L +HSEK+A+A+G +    
Sbjct: 538 PCSDTIVQELNRLIGRISALGYVPQTEFVLQDLAIEQKEDLLKYHSEKMAIAFGTMHAVG 597

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KNLRIC DCH++ K++S+   R+II+RD +RFH F+ G CSCGDYW
Sbjct: 598 GKPIRIMKNLRICGDCHAFAKLVSKSEGRMIIIRDPVRFHHFQDGACSCGDYW 650



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 113/220 (51%), Gaps = 8/220 (3%)

Query: 1   MPDKDVVSWNSMIGGFVR-NARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           MP+++VV+W +++      + R +EALRF   M    V P+ +TF+SV+  C   G L  
Sbjct: 141 MPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSVLGACGTPGVLAA 200

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H   ++  ++ +  + ++LID Y K G +   + VFD +   D+ VWN++I+G A 
Sbjct: 201 ---LHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQ 257

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            G    A  +F +M+      +  T   +L AC+   ++E GR+   H+      +  L 
Sbjct: 258 SGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHV---LKYERDLI 314

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            + A++D+  + G +E+A  L   M  + DV+ W  ++S 
Sbjct: 315 LHNALLDMYCKCGSLEDAEALFHRMP-QRDVISWSTMISG 353



 Score = 41.6 bits (96), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 37/190 (19%), Positives = 77/190 (40%), Gaps = 16/190 (8%)

Query: 40  DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELN---------FILSAALIDMYSKCG 90
           D  +   ++  C R G       +H  + E   +L+           +S +L+ MY+K G
Sbjct: 71  DPVSLTRLVKLCVRHGTAGDGRLIHRHV-EAHGQLSHYSGGAGGGIFVSNSLVSMYAKFG 129

Query: 91  KIQMAKEVFDTVQRNDVSVWNAMISGVA-IHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
            +  A  +FD +   +V  W  +++ +A   G   +A      M    V P++ TF  +L
Sbjct: 130 LLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSVL 189

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
            AC   G++            +  +   +    +++D   + G ++    +   M    D
Sbjct: 190 GACGTPGVLAA----LHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTR-D 244

Query: 210 VVVWRALLSA 219
           +VVW ++++ 
Sbjct: 245 LVVWNSIIAG 254


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 174/411 (42%), Positives = 252/411 (61%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K+++S+N++I  + +N   +EAL  F E+    +    FTFAS++ G A +G +     
Sbjct: 439 EKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQ 498

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  +I+  ++LN  +  ALI MYS+CG I+ A +VF+ ++  +V  W ++I+G A HG 
Sbjct: 499 IHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGF 558

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A  A  +F KM    V P+ +T++ +L+ACSH GLV EG K+F  M + + + P++EHY 
Sbjct: 559 ATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYA 618

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            MVD+LGR+G + EA   I SM  + D +VWR  L ACR    LELG+ A   I      
Sbjct: 619 CMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPH 678

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           D   Y+LLSN+Y    +WD   N+R+ MK+K + K  G SW+E+   +H+F  GD SHP+
Sbjct: 679 DPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTSHPK 738

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           A  I   L +L  + K  G++P  + VL DV EE+KE  L+ HSEK+A+A+G++ TS   
Sbjct: 739 AAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMK 798

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IR+ KNLRIC DCHS IK IS    R IIVRD  RFH  + G CSC +YW
Sbjct: 799 PIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 109/202 (53%), Gaps = 7/202 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++ V+W  MI   ++     EA+  F EM+ S  EPD+FT + VI  CA +  L   
Sbjct: 231 MPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLG 290

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKC---GKIQMAKEVFDTVQRNDVSVWNAMISG- 116
             +H+  I   + L+  +   LI+MY+KC   G +  A+++FD +  ++V  W AMI+G 
Sbjct: 291 QQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGY 350

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQ 175
           V   G   +A  +F  M + +V+P+  TF   L AC++   +  G + F H ++  +S  
Sbjct: 351 VQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSV 410

Query: 176 PQLEHYGAMVDLLGRAGHIEEA 197
             + +  +++ +  R+G I++A
Sbjct: 411 NCVAN--SLISMYARSGRIDDA 430



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 116/223 (52%), Gaps = 13/223 (5%)

Query: 3   DKDVVSWNSMIGGFVRNARFDE-ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           D +V SW +MI G+V+   +DE AL  FR M+ + V P+ FTF+S +  CA L AL    
Sbjct: 337 DHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALR--- 393

Query: 62  WVHNLIIEKKIELNF----ILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
            +   +    ++L F     ++ +LI MY++ G+I  A++ FD +   ++  +N +I   
Sbjct: 394 -IGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAY 452

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQP 176
           A +  + +A  +F ++E   +   + TF  LL+  +  G + +G +   H R  +  ++ 
Sbjct: 453 AKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQI--HARVIKSGLKL 510

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                 A++ +  R G+IE A+ +   M  + +V+ W ++++ 
Sbjct: 511 NQSVCNALISMYSRCGNIESAFQVFEDME-DRNVISWTSIITG 552



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 134/312 (42%), Gaps = 43/312 (13%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D++SW++M+  F  N     AL  F +M+ +   P+++ FA+    C+    ++    +
Sbjct: 131 RDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSI 190

Query: 64  HNLIIEKK-IELNFILSAALIDMYSKC-GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
              +++   ++ +  +   LIDM+ K  G +  A +VF+ +   +   W  MI+ +   G
Sbjct: 191 FGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFG 250

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD--------------- 166
            A +A  +F +M +    PD  T  G+++AC++  L+  G++                  
Sbjct: 251 YAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGC 310

Query: 167 ---HMRSRYSIQPQ-----------LEH----YGAMVD-LLGRAGHIEEAYGLITSMTME 207
              +M ++ S+              L+H    + AM+   + + G+ EEA  L   M + 
Sbjct: 311 CLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILT 370

Query: 208 ---PDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSN----MYCYLKRWDTA 260
              P+   + + L AC     L +GE    +  +L       ++N    MY    R D A
Sbjct: 371 HVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDA 430

Query: 261 ENVREIMKKKGV 272
               +I+ +K +
Sbjct: 431 RKAFDILFEKNL 442



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 102/255 (40%), Gaps = 46/255 (18%)

Query: 17  VRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNF 76
           + N R  +A+     M+     PD  T++  +  C R  + +    VH  + +  ++L+ 
Sbjct: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDS 101

Query: 77  ILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAIHGLAADASAIFTKMEM 135
           +   +LI +YSKCG+ + A  +F  +    D+  W+AM+S  A + +   A   F  M  
Sbjct: 102 VTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIE 161

Query: 136 FNVLPDSITFLGLLTACSH---------------------------CGLVE---EGR--- 162
               P+   F     ACS                            CGL++   +GR   
Sbjct: 162 NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDL 221

Query: 163 ----KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM---EPDVVVWRA 215
               K F+ M  R ++   L     M+  L + G+  EA  L   M +   EPD      
Sbjct: 222 VSAFKVFEKMPERNAVTWTL-----MITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSG 276

Query: 216 LLSACRTFKRLELGE 230
           ++SAC   + L LG+
Sbjct: 277 VISACANMELLLLGQ 291



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 4/124 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D++V+SW S+I GF ++    +AL  F +ML   V P+  T+ +V+  C+ +G +N  
Sbjct: 538 MEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEG 597

Query: 61  YWVH--NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGV 117
            W H  ++  E  +       A ++D+  + G +  A +  +++  + D  VW   +   
Sbjct: 598 -WKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGAC 656

Query: 118 AIHG 121
            +HG
Sbjct: 657 RVHG 660


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 174/413 (42%), Positives = 253/413 (61%), Gaps = 11/413 (2%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCAR-LGALNHAYWVHNL 66
           WN+MI G+ RN   ++AL  F EM+  + + P+  T ASV+  C   L A+     +H  
Sbjct: 284 WNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAY 343

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
            I   +  +  + +AL+DMY+KCG + +++ VF+ +   +V  WN +I    +HG   +A
Sbjct: 344 AIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEA 403

Query: 127 SAIFTKM-----EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
             +F  M           P+ +TF+ +  ACSH GL+ EG   F  M+  + ++P  +HY
Sbjct: 404 LELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHY 463

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVV-VWRALLSACRTFKRLELGEVAIVNISRL- 239
             +VDLLGRAG +EEAY L+ +M  E D V  W +LL ACR  + +ELGEVA  N+  L 
Sbjct: 464 ACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLE 523

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             +   YVLLSN+Y     W+ A  VR+ M++ GV+K  G SW+E    +H+F AGD SH
Sbjct: 524 PNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSH 583

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+++ +   L +L ++ + EG++P T  VL +V E+EKE  L  HSEKLA+A+GIL T P
Sbjct: 584 PQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNTPP 643

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IR++KNLR+C+DCH+  K IS+++ R IIVRD  RFH F+ G CSCGDYW
Sbjct: 644 GTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 696



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+D+VSWN+MI  F ++ RF EAL FFR M+   VE D  T ASV+  C+ L  L+    
Sbjct: 176 DRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKE 235

Query: 63  VHNLIIEKK--IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           +H  ++     IE +F+  +AL+DMY  C +++  + VFD +    + +WNAMISG A +
Sbjct: 236 IHAYVLRNNDLIENSFV-GSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARN 294

Query: 121 GLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           GL   A  +F +M ++  +LP++ T   ++ AC H        K       R  +   + 
Sbjct: 295 GLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDIT 354

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
              A+VD+  + G +  +  +   M  + +V+ W  L+ AC
Sbjct: 355 VGSALVDMYAKCGCLNLSRRVFNEMPNK-NVITWNVLIMAC 394



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 105/280 (37%), Gaps = 66/280 (23%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P +   SW   +    R+  F EA+  + EM  S   PD F F +V+   + L  L    
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 62  WVHNLIIE---------------------KKIELNFILSAALIDMYSKCGKIQMAKEVFD 100
            +H   ++                       I      + AL+ MY+K G++  +K +F+
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFE 172

Query: 101 TVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH------ 154
           +    D+  WN MIS  +     ++A A F  M +  V  D +T   +L ACSH      
Sbjct: 173 SFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDV 232

Query: 155 ------------------------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
                                         C  VE GR+ FDH+  R     ++E + AM
Sbjct: 233 GKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGR-----RIELWNAM 287

Query: 185 VDLLGRAGHIEEAYGLITSMT----MEPDVVVWRALLSAC 220
           +    R G  E+A  L   M     + P+     +++ AC
Sbjct: 288 ISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPAC 327



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 68/131 (51%), Gaps = 14/131 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-----SKVEPDKFTFASVIYGCARLG 55
           MP+K+V++WN +I     + + +EAL  F+ M++      + +P++ TF +V   C+  G
Sbjct: 379 MPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSG 438

Query: 56  ALNHAYWVHNLIIEKK----IELNFILSAALIDMYSKCGKIQMAKEVFDTV--QRNDVSV 109
            ++      NL    K    +E      A ++D+  + G+++ A E+ +T+  + + V  
Sbjct: 439 LISEGL---NLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGA 495

Query: 110 WNAMISGVAIH 120
           W++++    IH
Sbjct: 496 WSSLLGACRIH 506


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 167/409 (40%), Positives = 249/409 (60%), Gaps = 3/409 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +VVSW S+I G  +N +  EAL  FREM  + V+P+  T  S++  C  + AL H    H
Sbjct: 352 NVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTH 411

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
              +   +  N  + +ALIDMY+KCG+I +++ VF+ +   ++  WN++++G ++HG A 
Sbjct: 412 GFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAK 471

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           +  +IF  +    + PD I+F  LL+AC   GL +EG KYF  M   Y I+P+LEHY  M
Sbjct: 472 EVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCM 531

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---MG 241
           V+LLGRAG ++EAY LI  M  EPD  VW ALL++CR    ++L E+A   +  L     
Sbjct: 532 VNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENP 591

Query: 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
           G YVLLSN+Y     W   +++R  M+  G++K+ G SW+++   ++   AGD+SHP+  
Sbjct: 592 GTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQID 651

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
            I + +  + +  +  G  P  +  L DV E+E+E  L+ HSEKLA+ +G+L T  GT +
Sbjct: 652 QITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPL 711

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           ++ KNLRIC DCH+ IK IS    R I +RD  RFH F+ G+CSCGD+W
Sbjct: 712 QVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 114/253 (45%), Gaps = 39/253 (15%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + ++VSWN ++ GF R+    EA+  F+++      PD+ T +SV+        LN    
Sbjct: 214 EANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRL 273

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGK------------------------------- 91
           +H  +I++ +  +  + +A+IDMY K G                                
Sbjct: 274 IHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGL 333

Query: 92  IQMAKEVFD-----TVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFL 146
           +  A E+F+     T++ N VS W ++I+G A +G   +A  +F +M++  V P+ +T  
Sbjct: 334 VDKALEMFELFKEQTMELNVVS-WTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIP 392

Query: 147 GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM 206
            +L AC +   +  GR        R  +   +    A++D+  + G I  +  ++ +M  
Sbjct: 393 SMLPACGNIAALGHGRSTHG-FAVRVHLLDNVHVGSALIDMYAKCGRINLSQ-IVFNMMP 450

Query: 207 EPDVVVWRALLSA 219
             ++V W +L++ 
Sbjct: 451 TKNLVCWNSLMNG 463



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 99/237 (41%), Gaps = 39/237 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +PD  + S++S+I    +   F +++  F  M S  + PD     ++   CA L A    
Sbjct: 76  IPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVG 135

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV----------- 109
             +H +     ++++  +  ++  MY +CG++  A++VFD +   DV             
Sbjct: 136 KQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARK 195

Query: 110 ------------------------WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145
                                   WN ++SG    G   +A  +F K+      PD +T 
Sbjct: 196 GCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTV 255

Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
             +L +     ++  GR    ++  +  ++ +     AM+D+ G++GH+   YG+I+
Sbjct: 256 SSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCV-ISAMIDMYGKSGHV---YGIIS 308



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 64/117 (54%), Gaps = 2/117 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP K++V WNS++ GF  + +  E +  F  ++ ++++PD  +F S++  C ++G  +  
Sbjct: 449 MPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEG 508

Query: 61  YWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMIS 115
           +    ++ E+  I+      + ++++  + GK+Q A ++   +    D  VW A+++
Sbjct: 509 WKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLN 565


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  348 bits (892), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 176/415 (42%), Positives = 252/415 (60%), Gaps = 6/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + D+DVV+W +MI G+ ++  + EA+  FR M+  +  P+ +T A+++   + L +L H 
Sbjct: 373 LKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHG 432

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV--QRNDVSVWNAMISGVA 118
             +H   ++     +  +S ALI MY+K G I  A   FD +  +R+ VS W +MI  +A
Sbjct: 433 KQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVS-WTSMIIALA 491

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            HG A +A  +F  M M  + PD IT++G+ +AC+H GLV +GR+YFD M+    I P L
Sbjct: 492 QHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTL 551

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
            HY  MVDL GRAG ++EA   I  M +EPDVV W +LLSACR +K ++LG+VA   +  
Sbjct: 552 SHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLL 611

Query: 239 L---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L     G Y  L+N+Y    +W+ A  +R+ MK   V+K QG SW+E+   +H F   D 
Sbjct: 612 LEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDG 671

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
            HP+   I   +  +    K  G++P T  VL D+ EE KE  L HHSEKLA+A+G++ T
Sbjct: 672 IHPQKNEIYITMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLIST 731

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              T +RI KNLR+C+DCH+ IK IS+L+ R IIVRD  RFH F+ G CSC DYW
Sbjct: 732 PDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 122/292 (41%), Gaps = 76/292 (26%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           M ++D+V+WNSMI G+ +      AL  F +ML  S + PD+FT ASV+  CA L  L  
Sbjct: 238 MAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCI 297

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQM------------------------- 94
              +H+ I+    +++ I+  ALI MYS+CG ++                          
Sbjct: 298 GEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGY 357

Query: 95  --------AKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFL 146
                   AK +FD+++  DV  W AMI G   HGL  +A  +F  M      P+S T  
Sbjct: 358 IKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLA 417

Query: 147 GLLTACS-----------HCGLVEEGRKY------------------------FDHMRSR 171
            +L+  S           H   V+ G  Y                        FD +R  
Sbjct: 418 AMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRC- 476

Query: 172 YSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSAC 220
              +     + +M+  L + GH EEA  L  +M ME   PD + +  + SAC
Sbjct: 477 ---ERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSAC 525



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 121/284 (42%), Gaps = 71/284 (25%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P +D VSW +MI G+    ++ +A+R   EM+   +EP +FT  +V+   A    L   
Sbjct: 106 LPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETG 165

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA-------- 112
             VH+ I++  +  N  +S +L++MY+KCG   MAK VFD +   D+S WNA        
Sbjct: 166 KKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQV 225

Query: 113 -----------------------MISGVAIHGLAADASAIFTKMEMFNVL-PDSITFLGL 148
                                  MISG    G    A  +F+KM   ++L PD  T   +
Sbjct: 226 GQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASV 285

Query: 149 LTAC-----------------------------------SHCGLVEEGRKYFDHMRSRYS 173
           L+AC                                   S CG VE  R+  +    R +
Sbjct: 286 LSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQ---RGT 342

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              ++E + A++D   + G + EA  +  S+  + DVV W A++
Sbjct: 343 KDLKIEGFTALLDGYIKLGDMNEAKNIFDSLK-DRDVVAWTAMI 385


>gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
 gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
          Length = 653

 Score =  348 bits (892), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 180/414 (43%), Positives = 255/414 (61%), Gaps = 5/414 (1%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P KD+V+W +M+ G+ +NA   +AL  F +M  + +  D+ +    I  CA+LGA+  A 
Sbjct: 240 PVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAGAGMPIDEVSLTGAISACAQLGAVRRAV 299

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           W+  +     +  N ++ + L+DMY+KCG I  A  VF+ +Q  +V  +++MI G+A HG
Sbjct: 300 WIQEIADRSGLGRNVVVGSGLVDMYAKCGLIDEACRVFEGMQEKNVYTYSSMIVGLASHG 359

Query: 122 LAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            A DA A+F  M    +V P+ +TF+G+LTACSH G+V+EGR YF  M+ RY I P  +H
Sbjct: 360 RANDAIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADH 419

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MVDLLGRAG + EA  L+ SMT+EP   VW ALL ACR     ++ +VA  ++ +L 
Sbjct: 420 YTCMVDLLGRAGLVIEALDLVKSMTVEPHGGVWGALLGACRIHGNTKVAKVAAQHLFKLE 479

Query: 241 G---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLE-LAGVIHQFKAGDRS 296
               G+YVLLSN       WD    VR++M+ +G++K    S  E   G++HQF AGD +
Sbjct: 480 PEGIGNYVLLSNTLASAGEWDEVSKVRKLMRIRGLKKDPAVSSFEGRDGLVHQFFAGDNT 539

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP    I K L  L  R K  G++P    V+ +VS+EEKE  L  HSEKLAL++G+L   
Sbjct: 540 HPWMHEIKKTLLELRARLKLAGYVPVLSSVVYNVSDEEKERLLMGHSEKLALSFGLLTLE 599

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             + IRI KNLRIC DCH +I+++S++    IIVRD +RFH F  G CSCG +W
Sbjct: 600 SRSSIRIVKNLRICEDCHLFIRLVSKVEPIEIIVRDNMRFHHFRDGECSCGGFW 653



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/193 (20%), Positives = 78/193 (40%), Gaps = 44/193 (22%)

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           ++++ +  + I   +++  YS+   +  A+EVF      D+  W AM++G A + +   A
Sbjct: 204 VLDEMVVKDVISWTSIVAAYSRSRDMGSAEEVFALCPVKDMVAWTAMVTGYAQNAMPVKA 263

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSH-------------------------------- 154
              F +M    +  D ++  G ++AC+                                 
Sbjct: 264 LEAFEQMAGAGMPIDEVSLTGAISACAQLGAVRRAVWIQEIADRSGLGRNVVVGSGLVDM 323

Query: 155 ---CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT----ME 207
              CGL++E  + F+ M+ +      +  Y +M+  L   G   +A  L   M     +E
Sbjct: 324 YAKCGLIDEACRVFEGMQEK-----NVYTYSSMIVGLASHGRANDAIALFNDMVRRADVE 378

Query: 208 PDVVVWRALLSAC 220
           P+ V +  +L+AC
Sbjct: 379 PNHVTFIGVLTAC 391


>gi|346703119|emb|CBX25218.1| hypothetical_protein [Oryza brachyantha]
          Length = 596

 Score =  348 bits (892), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 163/413 (39%), Positives = 255/413 (61%), Gaps = 6/413 (1%)

Query: 4   KDVVSWNSMIGGFVRNAR--FDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHA 60
            D+ +WN+++  ++R A    D  L  F  M+S   V P++ T  +VI  C  LGAL H 
Sbjct: 184 PDLPAWNALLSAYMRCASSAADAILELFSRMISLGTVRPNEITLVAVIGACGELGALGHG 243

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W H  ++++++ +N I++ AL++MY+ CG++ +A+ VF T    D   +NAM+ G+A H
Sbjct: 244 VWAHTYLVKRQLAINRIVTTALVEMYAGCGRLDLAEHVFATASDRDTRCYNAMLQGLAAH 303

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +M    V  D +T L +L +C+H  LV+EG +YFD M   + I+P++EH
Sbjct: 304 GHGRAALDLFDRMRGSGVPVDGVTILSVLCSCAHAELVDEGLEYFDKMEIEFGIEPRIEH 363

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG +VD+L RAG +++A  LI  M + P+  ++R+L+ AC     LELGE  I  + +  
Sbjct: 364 YGCVVDMLSRAGRLDDAEKLIHEMPIVPNAAIYRSLIRACDIHGNLELGERMITELRQHD 423

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G++VL++N+Y  + RW+ A+  R+ MK  G+ KS G S L++ GV+H+F  GD++H
Sbjct: 424 PDDSGNHVLIANLYARMNRWEEAKKTRKEMKSMGIDKSPGSSLLDMNGVLHEFLVGDKTH 483

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P ++ I  ++  +  R    G   +T  VL DV EE+K   L +HSE+LA+ + ++ + P
Sbjct: 484 PASKEIYTMVEEIEARLSEHGHRSSTTSVLFDVEEEDKADTLTYHSERLAIPFALIASDP 543

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IRI KNLR+C DCH   K++SR+  R I++RDR RFH F  G CSCGD+W
Sbjct: 544 GTPIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRFHHFREGECSCGDFW 596



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 80  AALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG-VAIHGLAADAS-AIFTKM-EMF 136
           A L+D++++CG+I   + VFD +   D+  WNA++S  +     AADA   +F++M  + 
Sbjct: 159 AVLLDVFTRCGRIASCRRVFDRIACPDLPAWNALLSAYMRCASSAADAILELFSRMISLG 218

Query: 137 NVLPDSITFLGLLTACSHCGLVEEG 161
            V P+ IT + ++ AC   G +  G
Sbjct: 219 TVRPNEITLVAVIGACGELGALGHG 243



 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 2/121 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY- 61
           D+D   +N+M+ G   +     AL  F  M  S V  D  T  SV+  CA    ++    
Sbjct: 287 DRDTRCYNAMLQGLAAHGHGRAALDLFDRMRGSGVPVDGVTILSVLCSCAHAELVDEGLE 346

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIH 120
           +   + IE  IE        ++DM S+ G++  A+++   +    + +++ ++I    IH
Sbjct: 347 YFDKMEIEFGIEPRIEHYGCVVDMLSRAGRLDDAEKLIHEMPIVPNAAIYRSLIRACDIH 406

Query: 121 G 121
           G
Sbjct: 407 G 407


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  348 bits (892), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 167/413 (40%), Positives = 251/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M DK  V+W+SM+ G+V+N  ++EAL  +R      +E ++FT +SVI  C+ L AL   
Sbjct: 223 MQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG 282

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H +I +     N  ++++ +DMY+KCG ++ +  +F  VQ  ++ +WN +ISG A H
Sbjct: 283 KQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKH 342

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +   +F KM+   + P+ +TF  LL+ C H GLVEEGR++F  MR+ Y + P + H
Sbjct: 343 ARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVH 402

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  MVD+LGRAG + EAY LI S+  +P   +W +LL++CR +K LEL EVA   +  L 
Sbjct: 403 YSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELE 462

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G++VLLSN+Y   K+W+     R++++   V+K +GKSW+++   +H F  G+  H
Sbjct: 463 PENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGH 522

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + I   L +L+ + +  G+ P+ E  L DV   +KE  L  HSEKLAL +G++    
Sbjct: 523 PRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPE 582

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            + +RI KNLRIC DCH ++K  S   RR IIVRD  RFH F  G CSCGD+W
Sbjct: 583 SSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 114/219 (52%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++ +VSWN+MIG + RN    EAL  F EM +   +  +FT +SV+  C         
Sbjct: 122 MLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALEC 181

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L ++  I+LN  +  AL+D+Y+KCG I+ A +VF+++Q      W++M++G   +
Sbjct: 182 KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQN 241

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A  ++ + +  ++  +  T   ++ ACS+   + EG++    +  +      +  
Sbjct: 242 KNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQ-MHAVICKSGFGSNVFV 300

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             + VD+  + G + E+Y +I S   E ++ +W  ++S 
Sbjct: 301 ASSAVDMYAKCGSLRESY-IIFSEVQEKNLELWNTIISG 338



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 4/170 (2%)

Query: 51  CARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVW 110
           CAR GA+  A   H  II   +E +  L   LI+ YSKCG +++A++VFD +    +  W
Sbjct: 71  CARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSW 130

Query: 111 NAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS-HCGLVEEGRKYFDHMR 169
           N MI     + + ++A  IF +M          T   +L+AC  +C  +E   K    + 
Sbjct: 131 NTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALE--CKKLHCLS 188

Query: 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            +  I   L    A++DL  + G I++A  +  SM  +   V W ++++ 
Sbjct: 189 VKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESM-QDKSSVTWSSMVAG 237


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  347 bits (891), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 176/414 (42%), Positives = 249/414 (60%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +KD  +W+++I  + R     EAL  F  M    V P+  +  S++  C  L +L+H 
Sbjct: 290 MKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHG 349

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ ++    +L+  +S+ LI MY KCG +   K VFD     D+ +WN++I+G A H
Sbjct: 350 RQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQH 409

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +M      PD ITF+G+L+AC + G V+EG + F+ M+S+Y +  + EH
Sbjct: 410 GFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEH 469

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  MVDLLGRAG + EA  LI +M +E D +VW ALLSACRT K L+L E+A   + +L 
Sbjct: 470 YACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLE 529

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFK-AGDRS 296
               G Y+LLSN+Y    RW     +R+ M+ + V KS G SW+E+   +H F   G  S
Sbjct: 530 PSSAGPYILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGSAS 589

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HPE + I K L  L    +  G+ P    V+ DV EE+K  +L HHSEK+A+AYG+LK  
Sbjct: 590 HPEHEMIMKKLEKLGASLREAGYCPDGSFVMHDVDEEDKVHSLRHHSEKMAVAYGLLKVP 649

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  IR+ KNLR+C DCHS IK+I+++  R II+RD  RFH F+ GLCSC D+W
Sbjct: 650 VGKPIRVMKNLRVCGDCHSAIKLIAQVTGREIILRDANRFHHFKDGLCSCRDFW 703



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 107/232 (46%), Gaps = 20/232 (8%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K+VVSW  M+GG + + R DEA R F +M+  K   D     ++I G    G L+ A
Sbjct: 135 MPEKNVVSWTVMLGGLIEDGRVDEARRLF-DMIPVK---DVVASTNMIGGLCSEGRLSEA 190

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                 I ++  + N +   ++I  Y+   K+ +A+++F+ +   +   W AM+ G    
Sbjct: 191 ----REIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRS 246

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A+ +F  M +  V   +    G++      G V + R  FD M+ +         
Sbjct: 247 GRINEAAELFKAMPVKPVAACN----GMIMGFGLNGEVGKARWVFDQMKEKDD-----GT 297

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELG 229
           + A++ +  R G   EA  L + M  E   P+     ++LS C +   L+ G
Sbjct: 298 WSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHG 349



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 100/208 (48%), Gaps = 17/208 (8%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++ +SWN ++ G+V+N    EA + F +M    V     ++ S++ G  + G ++ A
Sbjct: 73  MPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNV----VSWTSMVRGYVQEGLIDEA 128

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +   + EK +    ++   LI+     G++  A+ +FD +   DV     MI G+   
Sbjct: 129 ELLFWRMPEKNVVSWTVMLGGLIE----DGRVDEARRLFDMIPVKDVVASTNMIGGLCSE 184

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  ++A  IF +M   NV    + +  +++  +    V+  RK F+ M  +  +      
Sbjct: 185 GRLSEAREIFDEMPQRNV----VAWTSMISGYAMNNKVDVARKLFEVMPDKNEVT----- 235

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEP 208
           + AM+    R+G I EA  L  +M ++P
Sbjct: 236 WTAMLKGYTRSGRINEAAELFKAMPVKP 263



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 104/222 (46%), Gaps = 16/222 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDK--FTFASVIYGCARLGALN 58
           MP ++VV+W SMI G+  N + D A + F  M      PDK   T+ +++ G  R G +N
Sbjct: 197 MPQRNVVAWTSMISGYAMNNKVDVARKLFEVM------PDKNEVTWTAMLKGYTRSGRIN 250

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
            A  +   +  K +         +I  +   G++  A+ VFD ++  D   W+A+I    
Sbjct: 251 EAAELFKAMPVKPVAA----CNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYE 306

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQ 177
             G   +A A+F+ M+   V P+  + + +L+ C     ++ GR+    + RS + +   
Sbjct: 307 RKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIY 366

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +     ++ +  + G +     +    + + D+V+W ++++ 
Sbjct: 367 VS--SVLITMYIKCGDLVTGKRVFDRFSSK-DIVMWNSIIAG 405



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 14/146 (9%)

Query: 76  FILSAAL----IDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFT 131
           F  SAA+    I  +++ G+I  A+ +FD +Q   V+ WNA+++G   +   A+A  +F 
Sbjct: 12  FSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFD 71

Query: 132 KMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRA 191
           KM   N    +I++ GL++     G++ E RK FD M  R  +      + +MV    + 
Sbjct: 72  KMPERN----TISWNGLVSGYVKNGMISEARKVFDKMPERNVVS-----WTSMVRGYVQE 122

Query: 192 GHIEEAYGLITSMTMEPDVVVWRALL 217
           G I+EA  L   M  E +VV W  +L
Sbjct: 123 GLIDEAELLFWRMP-EKNVVSWTVML 147



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 90/219 (41%), Gaps = 49/219 (22%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  K V SWN+++ G+  N R  EA + F +M      P++ T +               
Sbjct: 42  LQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKM------PERNTIS--------------- 80

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W                   L+  Y K G I  A++VFD +   +V  W +M+ G    
Sbjct: 81  -W-----------------NGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQE 122

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  +F +M   NV+  ++   GL+      G V+E R+ FD +  +  +      
Sbjct: 123 GLIDEAELLFWRMPEKNVVSWTVMLGGLIED----GRVDEARRLFDMIPVKDVVAST--- 175

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              M+  L   G + EA  +   M  + +VV W +++S 
Sbjct: 176 --NMIGGLCSEGRLSEAREIFDEMP-QRNVVAWTSMISG 211


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  347 bits (891), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 183/413 (44%), Positives = 253/413 (61%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           MP+K++VSWN++I G V+ + F+EA+  F  M S + V  D  T  S+   C  LGAL+ 
Sbjct: 429 MPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDL 488

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
           A W++  I +  I+L+  L   L+DM+S+CG  + A  +F+++   DVS W A I  +A+
Sbjct: 489 AKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAM 548

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            G A  A  +F  M    + PD + F+G LTACSH GLV++G++ F  M   + + P+  
Sbjct: 549 AGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDV 608

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HYG MVDLLGRAG +EEA  LI  M MEP+ V+W +LL+ACR    +E+   A   I  L
Sbjct: 609 HYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVL 668

Query: 240 M---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVLLSN+Y    RW+    VR  MK+KG+RK  G S +++ G  H+F +GD S
Sbjct: 669 APERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDES 728

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HPE   I+ +L  + QR    G +P    VLMDV E+EK   L  HSEKLA+AYG++ ++
Sbjct: 729 HPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSN 788

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDY 409
            GT IRI KNLR+C DCHS+ K  S++  R II+RD  RFH    G CSCGD+
Sbjct: 789 KGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDF 841



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 115/232 (49%), Gaps = 8/232 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALR-FFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           M +++VVSW SMI G+ R     +A+  FFR +   +V P+  T   VI  CA+L  L  
Sbjct: 195 MSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLET 254

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              V+  I    IE+N ++ +AL+DMY KC  I +AK +FD    +++ + NAM S    
Sbjct: 255 GEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVR 314

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            GL  +A  +F  M    V PD I+ L  +++CS    +  G+    ++  R   +    
Sbjct: 315 QGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVL-RNGFESWDN 373

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV 231
              A++D+  +    + A+ +   M+    VV W ++++       +E GEV
Sbjct: 374 ICNALIDMYMKCHRQDTAFRIFDRMS-NKTVVTWNSIVAG-----YVENGEV 419



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 102/190 (53%), Gaps = 2/190 (1%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           +NS+I G+  +   +EA+  F  M++S + PDK+TF   +  CA+  A  +   +H LI+
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
           +     +  +  +L+  Y++CG++  A++VFD +   +V  W +MI G A    A DA  
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221

Query: 129 IFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDL 187
           +F +M     V P+S+T + +++AC+    +E G K +  +R+   I+       A+VD+
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNS-GIEVNDLMVSALVDM 280

Query: 188 LGRAGHIEEA 197
             +   I+ A
Sbjct: 281 YMKCNAIDVA 290



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 98/236 (41%), Gaps = 34/236 (14%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIE 69
           N+M   +VR     EAL  F  M+ S V PD+ +  S I  C++L  +      H  ++ 
Sbjct: 306 NAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLR 365

Query: 70  KKIELNFILSAALIDMYSKC-------------------------------GKIQMAKEV 98
              E    +  ALIDMY KC                               G++  A E 
Sbjct: 366 NGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWET 425

Query: 99  FDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME-MFNVLPDSITFLGLLTACSHCGL 157
           F+T+   ++  WN +ISG+    L  +A  +F  M+    V  D +T + + +AC H G 
Sbjct: 426 FETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGA 485

Query: 158 VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVW 213
           ++   K+  +   +  IQ  +     +VD+  R G  E A  +  S+T   DV  W
Sbjct: 486 LDLA-KWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLT-NRDVSAW 539



 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 45/179 (25%)

Query: 92  IQMAKEVFDTVQRNDVS-VWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150
           +  AKEVF+  +      ++N++I G A  GL  +A  +F +M    + PD  TF   L+
Sbjct: 83  LSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLS 142

Query: 151 AC-----------------------------------SHCGLVEEGRKYFDHMRSRYSIQ 175
           AC                                   + CG ++  RK FD M  R  + 
Sbjct: 143 ACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVS 202

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTME----PDVVVWRALLSACRTFKRLELGE 230
                + +M+    R    ++A  L   M  +    P+ V    ++SAC   + LE GE
Sbjct: 203 -----WTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGE 256


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  347 bits (891), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 173/411 (42%), Positives = 253/411 (61%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K+++S+N++I  + +N   +EAL  F E+    +    FTFAS++ G A +G +     
Sbjct: 439 EKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQ 498

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  +I+  ++LN  +  ALI MYS+CG I+ A +VF+ ++  +V  W ++I+G A HG 
Sbjct: 499 IHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGF 558

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A  A  +F KM    V P+ +T++ +L+ACSH GLV EG K+F  M + + + P++EHY 
Sbjct: 559 ATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYA 618

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            +VD+LGR+G + EA   I SM  + D +VWR  L ACR    LELG+ A   I      
Sbjct: 619 CIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPH 678

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           D   Y+LLSN+Y  + +WD   N+R+ MK+K + K  G SW+E+   +H+F  GD SHP+
Sbjct: 679 DPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDTSHPK 738

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           A  I   L +L  + K  G++P  + VL DV EE+KE  L+ HSEK+A+A+G++ TS   
Sbjct: 739 AAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMK 798

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IR+ KNLRIC DCHS IK IS    R IIVRD  RFH  + G CSC +YW
Sbjct: 799 PIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 109/202 (53%), Gaps = 7/202 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++ V+W  MI   ++     EA+  F +M+ S  EPD+FT + VI  CA +  L   
Sbjct: 231 MPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLG 290

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKC---GKIQMAKEVFDTVQRNDVSVWNAMISG- 116
             +H+  I   + L+  +   LI+MY+KC   G +  A+++FD +  ++V  W AMI+G 
Sbjct: 291 QQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGY 350

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQ 175
           V   G   +A  +F  M + +V+P+  TF   L AC++   +  G + F H ++  +S  
Sbjct: 351 VQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSV 410

Query: 176 PQLEHYGAMVDLLGRAGHIEEA 197
             + +  +++ +  R+G I++A
Sbjct: 411 NCVAN--SLISMYARSGRIDDA 430



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 116/223 (52%), Gaps = 13/223 (5%)

Query: 3   DKDVVSWNSMIGGFVRNARFDE-ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           D +V SW +MI G+V+   +DE AL  FR M+ + V P+ FTF+S +  CA L AL    
Sbjct: 337 DHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALR--- 393

Query: 62  WVHNLIIEKKIELNF----ILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
            +   +    ++L F     ++ +LI MY++ G+I  A++ FD +   ++  +N +I   
Sbjct: 394 -IGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAY 452

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQP 176
           A +  + +A  +F ++E   +   + TF  LL+  +  G + +G +   H R  +  ++ 
Sbjct: 453 AKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQI--HARVIKSGLKL 510

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                 A++ +  R G+IE A+ +   M  + +V+ W ++++ 
Sbjct: 511 NQSVCNALISMYSRCGNIESAFQVFEDME-DRNVISWTSIITG 552



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 132/312 (42%), Gaps = 43/312 (13%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D++SW++M+  F  N     AL  F +M+ +   P+++ FA+    C+    ++    +
Sbjct: 131 RDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSI 190

Query: 64  HNLIIEKK-IELNFILSAALIDMYSKC-GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
              +I+   ++ +  +   LIDM+ K  G +  A +VF+ +   +   W  MI+ +   G
Sbjct: 191 FGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFG 250

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD--------------- 166
            A +A  +F  M      PD  T  G+++AC++  L+  G++                  
Sbjct: 251 YAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGC 310

Query: 167 ---HMRSRYSIQPQ-----------LEH----YGAMVD-LLGRAGHIEEAYGLITSMTME 207
              +M ++ S+              L+H    + AM+   + + G+ EEA  L   M + 
Sbjct: 311 CLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILT 370

Query: 208 ---PDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSN----MYCYLKRWDTA 260
              P+   + + L AC     L +GE    +  +L       ++N    MY    R D A
Sbjct: 371 HVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDA 430

Query: 261 ENVREIMKKKGV 272
               +I+ +K +
Sbjct: 431 RKAFDILFEKNL 442



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 101/255 (39%), Gaps = 46/255 (18%)

Query: 17  VRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNF 76
           + N R  +A+     M+     PD  T++  +  C R  + +    VH  + +  ++L+ 
Sbjct: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDS 101

Query: 77  ILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAIHGLAADASAIFTKMEM 135
           +   +LI +YSKCG+ + A  +F  +    D+  W+AM+S  A + +   A   F  M  
Sbjct: 102 VTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIE 161

Query: 136 FNVLPDSITFLGLLTACSH---------------------------CGLVE---EGR--- 162
               P+   F     ACS                            CGL++   +GR   
Sbjct: 162 NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDL 221

Query: 163 ----KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM---EPDVVVWRA 215
               K F+ M  R ++   L     M+  L + G+  EA  L   M     EPD      
Sbjct: 222 VSAFKVFEKMPERNAVTWTL-----MITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSG 276

Query: 216 LLSACRTFKRLELGE 230
           ++SAC   + L LG+
Sbjct: 277 VISACANMELLLLGQ 291



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 64/124 (51%), Gaps = 4/124 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D++V+SW S+I GF ++    +AL  F +ML   V P++ T+ +V+  C+ +G +N  
Sbjct: 538 MEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEG 597

Query: 61  YWVH--NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGV 117
            W H  ++  E  +       A ++D+  + G +  A +  +++  + D  VW   +   
Sbjct: 598 -WKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGAC 656

Query: 118 AIHG 121
            +HG
Sbjct: 657 RVHG 660


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  347 bits (891), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 174/414 (42%), Positives = 255/414 (61%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +KD  +W++MI  + R     +AL  FR M    + P+  +  SV+  CA L  L+H 
Sbjct: 372 MREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHG 431

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  ++  + +L+  +++ L+ MY KCG +  AK+VFD     DV +WN++I+G A H
Sbjct: 432 REIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQH 491

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  +F  M    ++PD +TF+G+L+ACS+ G V++G + F+ M ++Y ++ ++EH
Sbjct: 492 GLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEH 551

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  MVDLLGRAG + EA  LI  M ME D ++W ALL ACRT  +L+L EVA   ++ + 
Sbjct: 552 YACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLE 611

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS- 296
               G ++LLSN+Y    RWD    +R  M+ + V K  G SW+ +   +H+F  GD S 
Sbjct: 612 PKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSG 671

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HPE   I++IL  L    +  G+ P    VL DV EEEK  +L +HSEKLA+AYG+LK  
Sbjct: 672 HPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIP 731

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  IR+ KNLR+C DCH+ IK+I+++  R II+RD  RFH F+ G CSC DYW
Sbjct: 732 IGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 114/220 (51%), Gaps = 12/220 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++VVSW +MI G+V+N + D A + F  M     E ++ ++ +++ G    G L+ A
Sbjct: 279 MPRRNVVSWTTMITGYVQNQQVDIARKLFEVM----PEKNEVSWTAMLKGYTNCGRLDEA 334

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             + N +  K +    +   A+I  + + G++  A++VFD ++  D   W+AMI      
Sbjct: 335 SELFNAMPIKSV----VACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERK 390

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLE 179
           GL  DA  +F  M+   + P+  + + +L+ C+    ++ GR+    + RS++ +   + 
Sbjct: 391 GLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVA 450

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               ++ +  + G++ +A  +     ++ DVV+W ++++ 
Sbjct: 451 --SVLLSMYIKCGNLAKAKQVFDRFAVK-DVVMWNSIITG 487



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 111/235 (47%), Gaps = 26/235 (11%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K+VVSW  M+GG ++  R DEA R F  M     E D  T  ++I G  ++G L  A
Sbjct: 217 MPEKNVVSWTVMLGGLLQEGRIDEACRLFDMM----PEKDVVTRTNMIGGYCQVGRLVEA 272

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAI 119
                ++ ++    N +    +I  Y +  ++ +A+++F+ + ++N+VS W AM+ G   
Sbjct: 273 ----RMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVS-WTAMLKGYTN 327

Query: 120 HGLAADASAIFTKMEMFNVLP-DSITFLGLLTAC-SHCGLVEEGRKYFDHMRSRYSIQPQ 177
            G   +AS      E+FN +P  S+     +  C    G V + R+ FD MR +      
Sbjct: 328 CGRLDEAS------ELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREK-----D 376

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELG 229
              + AM+ +  R G   +A  L   M  E   P+     ++LS C     L+ G
Sbjct: 377 EGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHG 431



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 18/227 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M DK+++SWNS++ G+ +N R  EA   F +M     E +  ++  ++ G    G +N A
Sbjct: 124 MRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM----SERNTISWNGLVSGYINNGMINEA 179

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V + + E+    N +   A++  Y K G I  A+ +F  +   +V  W  M+ G+   
Sbjct: 180 REVFDRMPER----NVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQE 235

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F  M       D +T   ++      G + E R  FD M  R  +      
Sbjct: 236 GRIDEACRLFDMMPE----KDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVS----- 286

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
           +  M+    +   ++ A  L   M  E + V W A+L       RL+
Sbjct: 287 WTTMITGYVQNQQVDIARKLFEVMP-EKNEVSWTAMLKGYTNCGRLD 332


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  347 bits (891), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 165/413 (39%), Positives = 248/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++ VVSW SMI G+ R    D ++R F EM    + P+  T A ++  CA L AL   
Sbjct: 285 MGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERG 344

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I+     L+  ++ AL+DMY KCG + +A+ +FD +   D+  W  MI+G  +H
Sbjct: 345 QEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMH 404

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  ++A A F +M    + PD ++F+ +L ACSH GL++EG  +F+ MR+   I+P+ EH
Sbjct: 405 GYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEH 464

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  +VDLL RAG++ +AY  I  M +EPD  +W ALL  CR +  ++L E    ++  L 
Sbjct: 465 YACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELE 524

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLL+N+Y   ++W+  + +RE + ++G+RK+ G SW+E+ G +H F  GD SH
Sbjct: 525 PENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSH 584

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P A  I+ +L     R K EG  P     L+   + EKE  L  HSEK+A+A+GIL   P
Sbjct: 585 PLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAFGILSLPP 644

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  +R++KNLR+C DCH   K +S++++R II+RD  RFH F+ G CSC  +W
Sbjct: 645 GKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 697



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 108/218 (49%), Gaps = 31/218 (14%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+DV+SWNSMI G+V N   ++ L  F +ML   +  D  T  SV               
Sbjct: 213 DRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSV--------------- 257

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
                          L+  L+DMYSK G +  A +VF+T+    V  W +MI+G A  GL
Sbjct: 258 ------------ELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGL 305

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHY 181
           +  +  +F +ME  ++ P+SIT   +L AC+    +E G++   H +R+ +S+   + + 
Sbjct: 306 SDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVAN- 364

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            A+VD+  + G +  A  L+  M  E D+V W  +++ 
Sbjct: 365 -ALVDMYLKCGALGLAR-LLFDMIPEKDLVSWTVMIAG 400



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 108/219 (49%), Gaps = 28/219 (12%)

Query: 26  LRFFREMLSSKVEPDK--FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALI 83
           LR   E+++   +PD    T+ SV+  CA L ++     +H++I    +E++ +L + L+
Sbjct: 84  LRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLV 143

Query: 84  DMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM---------- 133
            MY  CG ++  + +FD V    V +WN +++G A  G   ++ ++F +M          
Sbjct: 144 FMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVES 203

Query: 134 --EMFNVLPDS--ITFLGLLTACSHCGLVEEGRKYFDHM---------RSRYSIQPQLEH 180
             ++F+ L D   I++  +++     GL E+G   F+ M          +  S++  L +
Sbjct: 204 ARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNN 263

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              ++D+  ++G++  A  +  +M  E  VV W ++++ 
Sbjct: 264 --CLLDMYSKSGNLNSAIQVFETMG-ERSVVSWTSMIAG 299


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  347 bits (891), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 174/414 (42%), Positives = 255/414 (61%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +KD  +W++MI  + R     +AL  FR M    + P+  +  SV+  CA L  L+H 
Sbjct: 372 MREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHG 431

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  ++  + +L+  +++ L+ MY KCG +  AK+VFD     DV +WN++I+G A H
Sbjct: 432 REIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQH 491

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  +F  M    ++PD +TF+G+L+ACS+ G V++G + F+ M ++Y ++ ++EH
Sbjct: 492 GLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEH 551

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  MVDLLGRAG + EA  LI  M ME D ++W ALL ACRT  +L+L EVA   ++ + 
Sbjct: 552 YACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLE 611

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS- 296
               G ++LLSN+Y    RWD    +R  M+ + V K  G SW+ +   +H+F  GD S 
Sbjct: 612 PKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSG 671

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HPE   I++IL  L    +  G+ P    VL DV EEEK  +L +HSEKLA+AYG+LK  
Sbjct: 672 HPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIP 731

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  IR+ KNLR+C DCH+ IK+I+++  R II+RD  RFH F+ G CSC DYW
Sbjct: 732 IGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 114/220 (51%), Gaps = 12/220 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++VVSW +MI G+V+N + D A + F  M     E ++ ++ +++ G    G L+ A
Sbjct: 279 MPRRNVVSWTTMITGYVQNQQVDIARKLFEVM----PEKNEVSWTAMLKGYTNCGRLDEA 334

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             + N +  K +    +   A+I  + + G++  A++VFD ++  D   W+AMI      
Sbjct: 335 SELFNAMPIKSV----VACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERK 390

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLE 179
           GL  DA  +F  M+   + P+  + + +L+ C+    ++ GR+    + RS++ +   + 
Sbjct: 391 GLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVA 450

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               ++ +  + G++ +A  +     ++ DVV+W ++++ 
Sbjct: 451 --SVLLSMYIKCGNLAKAKQVFDRFAVK-DVVMWNSIITG 487



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 111/235 (47%), Gaps = 26/235 (11%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K+VVSW  M+GG ++  R DEA R F  M     E D  T  ++I G  ++G L  A
Sbjct: 217 MPEKNVVSWTVMLGGLLQEGRIDEACRLFDMM----PEKDVVTRTNMIGGYCQVGRLVEA 272

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAI 119
                ++ ++    N +    +I  Y +  ++ +A+++F+ + ++N+VS W AM+ G   
Sbjct: 273 ----RMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVS-WTAMLKGYTN 327

Query: 120 HGLAADASAIFTKMEMFNVLP-DSITFLGLLTAC-SHCGLVEEGRKYFDHMRSRYSIQPQ 177
            G   +AS      E+FN +P  S+     +  C    G V + R+ FD MR +      
Sbjct: 328 CGRLDEAS------ELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDE---- 377

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELG 229
              + AM+ +  R G   +A  L   M  E   P+     ++LS C     L+ G
Sbjct: 378 -GTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHG 431



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 18/227 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M DK+++SWNS++ G+ +N R  EA   F +M     E +  ++  ++ G    G +N A
Sbjct: 124 MRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM----SERNTISWNGLVSGYINNGMINEA 179

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V + + E+    N +   A++  Y K G I  A+ +F  +   +V  W  M+ G+   
Sbjct: 180 REVFDRMPER----NVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQE 235

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F  M       D +T   ++      G + E R  FD M  R  +      
Sbjct: 236 GRIDEACRLFDMMPE----KDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVS----- 286

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
           +  M+    +   ++ A  L   M  E + V W A+L       RL+
Sbjct: 287 WTTMITGYVQNQQVDIARKLFEVMP-EKNEVSWTAMLKGYTNCGRLD 332


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  347 bits (891), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 170/415 (40%), Positives = 256/415 (61%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P++DVV+  ++I G+ +    +EAL+ FR++    +  +  T+ASV+   + L ALNH 
Sbjct: 252 LPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHG 311

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ ++        +L  +LIDMYSKCG +  A+ +FD++       WNAM+ G + H
Sbjct: 312 KQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKH 371

Query: 121 GLAADASAIFTKMEMFN-VLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQL 178
           G+A +   +F  M   N V PDSIT+L +L+ CSH  L + G + F +M   +  I+P +
Sbjct: 372 GMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDI 431

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVN 235
            HYG +VDLLGRAG +EEA+  I  M   P   +W +LL +CR    +E+G +    ++ 
Sbjct: 432 GHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLE 491

Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           +     G+YV+LSN+Y    +W+   N+R++M++K V K  G+SW+EL  ++H F A D 
Sbjct: 492 LEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDH 551

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           +HP  + + K +  L  + K +G++P    VL DV EE+KE  L  HSEKLALA+G++ T
Sbjct: 552 THPRREEVAKKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIAT 611

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             GT IR+ KNLRIC DCHS+ K +SRL  R +I+RD+ RFH   GG+CSCGDYW
Sbjct: 612 PEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 666



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 118/219 (53%), Gaps = 6/219 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP K+VVSW +MI  + +     EAL  F EML S  EP+ FTFA+++  C         
Sbjct: 151 MPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETG 210

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H++ I++  E +  + ++L+DMY+K G+I  A  VF  +   DV    A+ISG A  
Sbjct: 211 RQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQM 270

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRS-RYSIQPQL 178
           GL  +A  +F ++++  +  +S+T+  +LTA S    +  G++   H +RS +YS    L
Sbjct: 271 GLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLL 330

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
               +++D+  + G++  A  +  SM  E   + W A+L
Sbjct: 331 ---NSLIDMYSKCGNVCYARRIFDSMP-ERTCISWNAML 365



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 95/190 (50%), Gaps = 5/190 (2%)

Query: 44  FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           + +++  C    A+     VH  +I+     +  L   LI +Y+KC  +  A+E+FD + 
Sbjct: 93  YDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMP 152

Query: 104 RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
           + +V  W AMIS  +  G A +A  +F +M   +  P+  TF  +LT+C      E GR+
Sbjct: 153 QKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQ 212

Query: 164 YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTF 223
               +  + + +  +    +++D+  ++G I +A+G+   +  E DVV   A++S    +
Sbjct: 213 -IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLP-ERDVVACTAIISG---Y 267

Query: 224 KRLELGEVAI 233
            ++ L E A+
Sbjct: 268 AQMGLDEEAL 277


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  347 bits (890), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 173/413 (41%), Positives = 255/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M DK++VSWN+MI G+ +N    E+L  FR+ LS  ++  +    SV   C++L AL   
Sbjct: 512 MKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLG 571

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H  +++     +  +  ++IDMY+K G I+ +++VFD ++  +V+ WNA+I    IH
Sbjct: 572 KEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIH 631

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  ++ +M+    +PD  T++G+L AC H GLVEEG KYF  M++   I+P+LEH
Sbjct: 632 GHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEH 691

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  ++D+L RAG +++A  L+  M  E D  +W +LL +CRTF  LE+GE     +  L 
Sbjct: 692 YACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELE 751

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                +YVLLSN+Y  L +WD    VR++MK+ G++K  G SW+E+ G ++ F  GD   
Sbjct: 752 PDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQ 811

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P++  I  I   L +R    G+ P T  VL +V EEEK   L  HSEKLA+++G+LKT+ 
Sbjct: 812 PKSAEIRVIWRRLEERISEIGYKPNTSSVLHEVGEEEKIDILRGHSEKLAISFGLLKTTK 871

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT +RI KNLRIC DCH+  K+IS+ + R I+VRD  RFH F  GLCSC DYW
Sbjct: 872 GTTLRIYKNLRICADCHNAAKLISKAVEREIVVRDNKRFHHFRDGLCSCCDYW 924



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 115/218 (52%), Gaps = 4/218 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           DK V SWN++IGG  +N    +AL    +M  S  +PD FT +S++  CA L +L +   
Sbjct: 413 DKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKE 472

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  ++   +E +F +  +L+  Y  CGK   A+ +FD ++  ++  WNAMISG + +GL
Sbjct: 473 IHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGL 532

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             ++ A+F K     +    I  + +  ACS    +  G++   H     ++Q +    G
Sbjct: 533 PYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEA--HGYVLKALQTEDAFVG 590

Query: 183 -AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            +++D+  ++G I+E+  +   +  + +V  W A++ A
Sbjct: 591 CSIIDMYAKSGCIKESRKVFDGLK-DKNVASWNAIIVA 627



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 117/223 (52%), Gaps = 8/223 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           M  K+++ WN+++ G+ RN  + + ++ F +++S +  +PD FTF SVI  C  +  +  
Sbjct: 105 METKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRL 164

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H ++I+  + L+  +  AL+ MY KCG +  A +VFD +   ++  WN+MI   + 
Sbjct: 165 GEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSE 224

Query: 120 HGLAADASAIFTKMEMF---NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
           +G + D+  +   MEM     +LPD +T + +L  C+  G V+ G      +  +  +  
Sbjct: 225 NGFSRDSFDLL--MEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMG-IHGLAVKLGLSE 281

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++    AMV +  + G++ EA  +        +VV W  ++SA
Sbjct: 282 EVMVNNAMVYMYSKCGYLNEAQ-MSFVKNNNKNVVSWNTMISA 323



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 114/270 (42%), Gaps = 45/270 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           MP+ ++VSWNSMI  F  N    ++     EML  + + PD  T  +++  CA  G ++ 
Sbjct: 207 MPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDI 266

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H L ++  +    +++ A++ MYSKCG +  A+  F      +V  WN MIS  ++
Sbjct: 267 GMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSL 326

Query: 120 HGLAADASAIFTKMEM------------FNVLPDSITFLGL------------------- 148
            G   +A  +  +M++             NVLP  +  L L                   
Sbjct: 327 EGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQHVE 386

Query: 149 -----LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
                + A + CG +    K F  +  +      +  + A++    + G   +A  L+  
Sbjct: 387 LSNAFILAYAKCGALNSAEKVFHGIGDK-----TVSSWNALIGGHAQNGDPRKALHLLFQ 441

Query: 204 MT---MEPDVVVWRALLSACRTFKRLELGE 230
           MT    +PD     +LL AC   K L+ G+
Sbjct: 442 MTYSGQQPDWFTISSLLLACAHLKSLQYGK 471



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 5/219 (2%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREML--SSKVEPDKFTFASVIYGCARLGALNHA 60
           +K+VVSWN+MI  F      +EA    +EM     +++ ++ T  +V+  C     L   
Sbjct: 311 NKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSL 370

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H        + +  LS A I  Y+KCG +  A++VF  +    VS WNA+I G A +
Sbjct: 371 KELHGYSFRHCFQ-HVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQN 429

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +  +M      PD  T   LL AC+H   ++ G++   ++  R  ++     
Sbjct: 430 GDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVL-RNGLETDFFV 488

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +++      G    A  L   M  + ++V W A++S 
Sbjct: 489 GTSLLSHYIHCGKASSARVLFDRMK-DKNLVSWNAMISG 526



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 93/221 (42%), Gaps = 47/221 (21%)

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM- 133
           +++L+  LI MY+ CG    ++ VFD ++  ++  WNA++SG   +GL  D   +F  + 
Sbjct: 78  DYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLV 137

Query: 134 EMFNVLPDSITFLGLLTAC-----------------------------------SHCGLV 158
              +  PD+ TF  ++ AC                                     CG V
Sbjct: 138 SDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAV 197

Query: 159 EEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME----PDVVVWR 214
           +E  K FD M      +  L  + +M+      G   +++ L+  M  E    PDVV   
Sbjct: 198 DEAMKVFDFMP-----ETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVV 252

Query: 215 ALLSACRTFKRLELGEVAIVNISRLMG-GDYVLLSNMYCYL 254
            +L  C     +++G + I  ++  +G  + V+++N   Y+
Sbjct: 253 TILPVCAGEGEVDIG-MGIHGLAVKLGLSEEVMVNNAMVYM 292


>gi|357141422|ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Brachypodium distachyon]
          Length = 571

 Score =  347 bits (890), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 172/410 (41%), Positives = 251/410 (61%), Gaps = 7/410 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D+  WNS++  ++    +   LR FR+M+++    D+ T  +V+  C+ LGAL+   W 
Sbjct: 166 RDLALWNSLLHAYLSQGLYTHVLRLFRQMVAT----DEVTLLAVVSACSHLGALDTGRWA 221

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H             L  AL++MY +CG ++ A  VF  +   DV  W+ MI+G+A++GL 
Sbjct: 222 HAYHARTCRNTTRNLGTALLNMYMRCGDVESAWSVFHEMLDKDVRTWSVMIAGLAVNGLP 281

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            DA  +F +M+   V PDSIT   +L+ACSH G+V+EG+ +   M   Y +QP +EHYG 
Sbjct: 282 RDALKLFAEMKNIGVDPDSITMTAVLSACSHAGMVDEGKMFLHCMPIEYHLQPTIEHYGC 341

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---M 240
           +VDLLGRAG +EEA  LI ++  + DV +W ALL ACR  K +++G++A + I +L    
Sbjct: 342 VVDLLGRAGQLEEALALIETVPFKADVALWGALLVACRAHKNVDMGQMAAMEILKLDPHH 401

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G  V LSN Y    +WD  + VR  MK+  + K  G S +EL GV+++F +GD SHP++
Sbjct: 402 AGACVFLSNAYAAAGKWDLVQEVRSSMKEHRIYKPPGSSIVELDGVVYEFLSGDHSHPQS 461

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
             I  +L  + +    +G  P+T+ V  D+ EE+KE  +  HSEKLALA G++ T  G  
Sbjct: 462 DRIYAMLDEVCKTLSLKGHRPSTKEVAFDIDEEDKEVCISQHSEKLALALGLISTRRGAV 521

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IRI KNLRIC DCHS +K++S +  RVI+VRDR RFH F+ G CSC DYW
Sbjct: 522 IRIVKNLRICEDCHSVMKIVSEVYDRVIVVRDRNRFHHFKNGSCSCLDYW 571



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 109/222 (49%), Gaps = 18/222 (8%)

Query: 8   SWNSMIGGFVRNARFDEALRFFREMLSSKV-EPDKFTFASVIYGCARLGALNHA------ 60
           S+N+ I       R   A+  +R ML + +  P+ +T+  ++  CARL   +        
Sbjct: 59  SYNTTIRSLAHGPRPHLAVALYRSMLLNPLSNPNNYTYPPLLAACARLLPAHPPREAAAG 118

Query: 61  YWVHNLIIEKKIE-LNFILSAALIDMYSKCGKIQMAKEVFDTVQRN--DVSVWNAMISGV 117
             VH  +  + +E  +  +SA+++  Y+  G +  A+EVFD    N  D+++WN+++   
Sbjct: 119 TAVHASLFRRGLESRDRFISASMLSFYAAAGDLPAAREVFDRSPPNQRDLALWNSLLHAY 178

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR-KYFDHMRSRYSIQP 176
              GL      +F +M    V  D +T L +++ACSH G ++ GR  +  H R+  +   
Sbjct: 179 LSQGLYTHVLRLFRQM----VATDEVTLLAVVSACSHLGALDTGRWAHAYHARTCRNTTR 234

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
            L    A++++  R G +E A+ +   M ++ DV  W  +++
Sbjct: 235 NLG--TALLNMYMRCGDVESAWSVFHEM-LDKDVRTWSVMIA 273



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M DKDV +W+ MI G   N    +AL+ F EM +  V+PD  T  +V+  C+  G ++  
Sbjct: 260 MLDKDVRTWSVMIAGLAVNGLPRDALKLFAEMKNIGVDPDSITMTAVLSACSHAGMVDEG 319

Query: 61  -YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             ++H + IE  ++        ++D+  + G+++ A  + +TV  + DV++W A++    
Sbjct: 320 KMFLHCMPIEYHLQPTIEHYGCVVDLLGRAGQLEEALALIETVPFKADVALWGALLVACR 379

Query: 119 IH 120
            H
Sbjct: 380 AH 381


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  347 bits (890), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 168/415 (40%), Positives = 257/415 (61%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML--SSKVEPDKFTFASVIYGCARLGALN 58
           MP ++VVSW++MI  + +N +  EALR FREM+  +    P+  T  SV+  CA L AL 
Sbjct: 243 MPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALE 302

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H  I+ + ++    + +AL+ MY +CGK+++ + VFD +   DV  WN++IS   
Sbjct: 303 QGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYG 362

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG    A  IF +M      P  +TF+ +L ACSH GLVEEG++ F+ M   + I+PQ+
Sbjct: 363 VHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQI 422

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVN 235
           EHY  MVDLLGRA  ++EA  ++  M  EP   VW +LL +CR    +EL E A   +  
Sbjct: 423 EHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFA 482

Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           +     G+YVLL+++Y   + WD  + V+++++ +G++K  G+ W+E+   ++ F + D 
Sbjct: 483 LEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDE 542

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
            +P  + I   L  L +  K +G++P T+ VL ++  EEKE  +  HSEKLALA+G++ T
Sbjct: 543 FNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINT 602

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           S G  IRI+KNLR+C DCH + K IS+ + + I+VRD  RFHRF+ G+CSCGDYW
Sbjct: 603 SKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 111/234 (47%), Gaps = 20/234 (8%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           +S N +I    +  +  +A+R    +LS +  P + T+  +I  C    +L+ A  VH  
Sbjct: 47  ISNNQLIQSLCKEGKLKQAIR----VLSQESSPSQQTYELLILCCGHRSSLSDALRVHRH 102

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           I++   + +  L+  LI MYS  G +  A++VFD  ++  + VWNA+   + + G   + 
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTAC--SHCGL--VEEGRKYFDHMRSRYSIQPQLEHYG 182
             ++ KM    V  D  T+  +L AC  S C +  + +G++   H+ +R      +    
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHL-TRRGYSSHVYIMT 221

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS----------ACRTFKRL 226
            +VD+  R G ++ A  +   M +  +VV W A+++          A RTF+ +
Sbjct: 222 TLVDMYARFGCVDYASYVFGGMPVR-NVVSWSAMIACYAKNGKAFEALRTFREM 274



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 108/224 (48%), Gaps = 12/224 (5%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGC-ARLGALNH--- 59
           + +  WN++          +E L  + +M    VE D+FT+  V+  C A    +NH   
Sbjct: 141 RTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMK 200

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  +  +    +  +   L+DMY++ G +  A  VF  +   +V  W+AMI+  A 
Sbjct: 201 GKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAK 260

Query: 120 HGLAADASAIFTKM--EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM--RSRYSIQ 175
           +G A +A   F +M  E  +  P+S+T + +L AC+    +E+G+    ++  R   SI 
Sbjct: 261 NGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSIL 320

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           P +    A+V + GR G +E    +   M  + DVV W +L+S+
Sbjct: 321 PVI---SALVTMYGRCGKLEVGQRVFDRM-HDRDVVSWNSLISS 360


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  347 bits (890), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 169/413 (40%), Positives = 255/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D+V W++MI G+  + +  EAL+ F EML  +  PD+ T  SVI  C+ +GAL  A
Sbjct: 314 MIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQA 373

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H  +          ++ ALIDMY+KCG +  A+EVF+ + R +V  W++MI+  A+H
Sbjct: 374 NWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMH 433

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A  A  +F +M+  N+ P+ +TF+G+L AC H GLVEEG K F  M + + I P  EH
Sbjct: 434 GNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREH 493

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDL  RA  + +A  LI +M   P+V++W +L+SAC+     ELGE A   ++ + 
Sbjct: 494 YGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELE 553

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G  V+LSN+Y   KRW+    +R+ M  KG+ K +  S +E+   +H F   DR H
Sbjct: 554 PDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYH 613

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            ++  I + L  ++ + K  G+ P+T  +L+D+ EE+K+  +  HSEKLA+ YG++    
Sbjct: 614 KQSDEIYEKLDEVVSKLKLVGYKPSTSGILIDLEEEDKKELVLWHSEKLAVCYGLISRRN 673

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            + IRI KNLRIC DCHS++K++S++ +  I+VRDR RFH   GG+CSC DYW
Sbjct: 674 ESCIRIVKNLRICEDCHSFMKLVSKVYQIEIVVRDRTRFHHCSGGICSCRDYW 726



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 122/253 (48%), Gaps = 39/253 (15%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M   D V+WN +I G+ +N  +D+ALR F +M SS ++PD     +V+  C   G L++ 
Sbjct: 182 MCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYG 241

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  + +    ++  L  ALI+MY+ CG + +A++++D +    + V  AM+SG A  
Sbjct: 242 RTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKL 301

Query: 121 GLAADASAIFTKM-----------------------------EMFN--VLPDSITFLGLL 149
           G+  DA  IF +M                             EM     +PD IT L ++
Sbjct: 302 GMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVI 361

Query: 150 TACSHCGLVEEGR---KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM 206
           +ACSH G + +      Y D    R      L    A++D+  + G++ +A  +  +M  
Sbjct: 362 SACSHVGALAQANWIHTYVD----RSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPR 417

Query: 207 EPDVVVWRALLSA 219
           + +V+ W ++++A
Sbjct: 418 K-NVISWSSMINA 429



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 91/181 (50%), Gaps = 4/181 (2%)

Query: 40  DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF 99
           D+F+F S++   +++ A NH   +H L  +     +  +   LI MY+ C +I  A+ +F
Sbjct: 120 DRFSFPSLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLF 179

Query: 100 DTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVE 159
           D +   D   WN +I G   +G   DA  +F  M   ++ PDS+    +L+AC H G + 
Sbjct: 180 DKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLS 239

Query: 160 EGRKYFDHMRSR-YSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
            GR   + ++   Y+I   L+   A++++    G ++ A  +   ++ +  ++V  A+LS
Sbjct: 240 YGRTIHEFVKDNGYAIDSHLQ--TALINMYANCGAMDLARKIYDGLSSK-HLIVSTAMLS 296

Query: 219 A 219
            
Sbjct: 297 G 297



 Score = 40.0 bits (92), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 18/126 (14%)

Query: 107 VSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD 166
           VS  +A   G+ IHGLA+              + D     GL+   + C  + + R  FD
Sbjct: 131 VSKVSAFNHGLEIHGLASK----------LGFVDDPFIQTGLIAMYASCRRIMDARLLFD 180

Query: 167 HMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM---TMEPDVVVWRALLSACRTF 223
            M       P    +  ++D   + GH ++A  L   M    M+PD V+   +LSAC   
Sbjct: 181 KM-----CHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHA 235

Query: 224 KRLELG 229
             L  G
Sbjct: 236 GNLSYG 241


>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
          Length = 664

 Score =  347 bits (890), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 176/414 (42%), Positives = 254/414 (61%), Gaps = 5/414 (1%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P KD+V+W +M+ G+ +NA   +AL  F +M  + +  D+ +    I  CA+LGA+  A 
Sbjct: 251 PVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQLGAVKRAA 310

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           WV  +     +  N ++ + L+DMY+KCG I  A++VF+ +   +V  +++MI G+A HG
Sbjct: 311 WVQEIAERNGLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASHG 370

Query: 122 LAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            A D  A+F  M    +V P+ +TF+G+LTACSH G+V+EGR YF  M+ RY I P  +H
Sbjct: 371 RANDVIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADH 430

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MVDLL R+G + EA  L+ SMT+EP   VW ALL ACR     E+ ++A  ++ RL 
Sbjct: 431 YACMVDLLARSGLVTEALDLVKSMTVEPHGGVWGALLGACRIHGNTEVAKIAAEHLFRLE 490

Query: 241 G---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLE-LAGVIHQFKAGDRS 296
               G+YVLLSN       WD    +R++M+ +G++K    SW E   G +HQF AGD +
Sbjct: 491 PEGIGNYVLLSNTLASAGEWDEVSKLRKLMRIRGLKKDPAVSWFEGRDGFVHQFFAGDNT 550

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP    I K L  L ++    G++P    V+ +VSEEEKE  L  HSEKLAL++G+L   
Sbjct: 551 HPSMHEIKKRLLELREKLNLAGYVPILSSVVYNVSEEEKERLLMGHSEKLALSFGLLTLE 610

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             + IRI KNLRIC DCH +I+++S++    I+VRD +RFH F  G CSCG +W
Sbjct: 611 SRSSIRIVKNLRICEDCHLFIRLVSKVEPIEILVRDNMRFHHFRDGECSCGGFW 664



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 44/179 (24%)

Query: 81  ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP 140
           +++  YS+   +  A+EVF      D+  W AM++G A + +   A   F +M +  +  
Sbjct: 229 SIVVAYSRIRDMGSAEEVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAVAGMPI 288

Query: 141 DSITFLGLLTACSH-----------------------------------CGLVEEGRKYF 165
           D ++  G ++AC+                                    CGL++E RK F
Sbjct: 289 DEVSLTGAISACAQLGAVKRAAWVQEIAERNGLGRNVVVGSGLVDMYAKCGLIDEARKVF 348

Query: 166 DHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT----MEPDVVVWRALLSAC 220
           + M  +      +  Y +M+  L   G   +   L   M     +EP+ V +  +L+AC
Sbjct: 349 EGMHDK-----NVYTYSSMIVGLASHGRANDVIALFNDMVRRADVEPNHVTFIGVLTAC 402



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 9/127 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           M DK+V +++SMI G   + R ++ +  F +M+  + VEP+  TF  V+  C+  G +  
Sbjct: 351 MHDKNVYTYSSMIVGLASHGRANDVIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKE 410

Query: 60  A-YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDV----SVWNAMI 114
             Y+   +     I  +    A ++D+ ++ G   +  E  D V+   V     VW A++
Sbjct: 411 GRYYFAQMKDRYGILPSADHYACMVDLLARSG---LVTEALDLVKSMTVEPHGGVWGALL 467

Query: 115 SGVAIHG 121
               IHG
Sbjct: 468 GACRIHG 474


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  347 bits (889), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 173/438 (39%), Positives = 262/438 (59%), Gaps = 28/438 (6%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE------------------PDKF 42
            M  +D+VSWN+MI G +   R+D+AL    EM   + E                  P+  
Sbjct: 698  MNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSV 757

Query: 43   TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV 102
            T  +V+ GCA L AL     +H   +++K+ ++  + +AL+DMY+KCG + +A  VFD +
Sbjct: 758  TLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQM 817

Query: 103  QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFN------VLPDSITFLGLLTACSHCG 156
               +V  WN +I    +HG   +A  +F  M          + P+ +T++ +  ACSH G
Sbjct: 818  PIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSG 877

Query: 157  LVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV-VWRA 215
            +V+EG   F  M++ + ++P+ +HY  +VDLLGR+G ++EAY LI +M    + V  W +
Sbjct: 878  MVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSS 937

Query: 216  LLSACRTFKRLELGEVAIVNISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGV 272
            LL ACR  + +E GE+A  ++  L   +   YVL+SN+Y     WD A  VR+ MK+ GV
Sbjct: 938  LLGACRIHQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGV 997

Query: 273  RKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSE 332
            RK  G SW+E    +H+F +GD SHP+++ + + L +L QR + EG++P    VL +V +
Sbjct: 998  RKEPGCSWIEHGDEVHKFLSGDASHPQSKELHEYLETLSQRMRKEGYVPDISCVLHNVDD 1057

Query: 333  EEKEGNLYHHSEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRD 392
            EEKE  L  HSE+LA+A+G+L T PGT IR++KNLR+C+DCH   K+IS+++ R II+RD
Sbjct: 1058 EEKETMLCGHSERLAIAFGLLNTPPGTTIRVAKNLRVCNDCHVATKIISKIVDREIILRD 1117

Query: 393  RIRFHRFEGGLCSCGDYW 410
              RFH F  G CSCGDYW
Sbjct: 1118 VRRFHHFANGTCSCGDYW 1135



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 118/243 (48%), Gaps = 6/243 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD+VSWN++I    +N RF+EAL +   M+   V PD  T ASV+  C++L  L     +
Sbjct: 497 KDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREI 556

Query: 64  HNLIIEKK--IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           H   +     IE +F+   AL+DMY  C + +  + VFD V R  V+VWNA+++G A + 
Sbjct: 557 HCYALRNGDLIENSFV-GTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNE 615

Query: 122 LAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               A  +F +M       P++ TF  +L AC  C +  +      ++  R   + +   
Sbjct: 616 FDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQ 675

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
             A++D+  R G +E +  +   M    D+V W  +++ C    R +     +  + R  
Sbjct: 676 -NALMDMYSRMGRVEISKTIFGRMNKR-DIVSWNTMITGCIVCGRYDDALNLLHEMQRRQ 733

Query: 241 GGD 243
           G D
Sbjct: 734 GED 736



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 117/239 (48%), Gaps = 29/239 (12%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYW 62
           + V  WN+++ G+ RN   D+ALR F EM+S S+  P+  TFASV+  C R    +    
Sbjct: 599 RTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEG 658

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  I+++    +  +  AL+DMYS+ G+++++K +F  + + D+  WN MI+G  + G 
Sbjct: 659 IHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGR 718

Query: 123 AADASAIFTKMEM------------------FNVLPDSITFLGLLTACSHCGLVEEGRKY 164
             DA  +  +M+                       P+S+T + +L  C+    + +G++ 
Sbjct: 719 YDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEI 778

Query: 165 FDHMRSRYSIQPQLEH----YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                  Y+++ +L        A+VD+  + G +  A  +   M +  +V+ W  L+ A
Sbjct: 779 -----HAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIR-NVITWNVLIMA 831



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 110/239 (46%), Gaps = 16/239 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA------RL 54
           +PD+D VSWNSMI    R   ++ +L  FR MLS  V+P  FT  SV + C+      RL
Sbjct: 393 IPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRL 452

Query: 55  GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMI 114
           G   HAY + N       +L    + AL+ MY++ G++  AK +F      D+  WN +I
Sbjct: 453 GKQVHAYTLRNG------DLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVI 506

Query: 115 SGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI 174
           S ++ +    +A      M +  V PD +T   +L ACS    +  GR+   +      +
Sbjct: 507 SSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDL 566

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI 233
                   A+VD+       ++   L+    +   V VW ALL+    + R E  + A+
Sbjct: 567 IENSFVGTALVDMYCNCKQPKKGR-LVFDGVVRRTVAVWNALLAG---YARNEFDDQAL 621



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 103/231 (44%), Gaps = 24/231 (10%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           W  ++     ++ F +A+  +  ML++   PD F F +V+   A          VH+L +
Sbjct: 298 WIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAA---------VHDLCL 348

Query: 69  EKKIELNFI-----------LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
            K+I  +             ++ +L++MY KCG +  A++VFD +   D   WN+MI+ +
Sbjct: 349 GKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATL 408

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHC-GLVEEGRKYFDHMRSRYSIQP 176
                   +  +F  M   NV P S T + +  ACSH  G V  G++   +      ++ 
Sbjct: 409 CRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRT 468

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
              +  A+V +  R G + +A  L      + D+V W  ++S+     R E
Sbjct: 469 YTNN--ALVTMYARLGRVNDAKALFGVFDGK-DLVSWNTVISSLSQNDRFE 516


>gi|195609728|gb|ACG26694.1| pentatricopeptide repeat protein PPR986-12 [Zea mays]
          Length = 551

 Score =  347 bits (889), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 173/427 (40%), Positives = 265/427 (62%), Gaps = 17/427 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE--PDKFTFASVIYGCARLGALN 58
           +PD+ +VSWN+ +     N     AL  FREM   + +  PD +T  SV+  CA  GAL+
Sbjct: 125 VPDRSLVSWNTAVDALAGNGDHLAALDLFREMQRDRPDLAPDAYTVQSVLGACAATGALS 184

Query: 59  HAYWVHNLIIEK--------KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVW 110
              + H L++ +         +  + +++ +L+D+Y KCG +++A++VFD +   D++ W
Sbjct: 185 LGLYAHALLLRELGGAGHASPVSRDVLINNSLVDLYGKCGAVELARQVFDRMSERDLASW 244

Query: 111 NAMISGVAIHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169
           NAM+  +A HG   D+  +F +M  +  ++P++ITF+ +L+AC+H GLV+EGR+YF  M 
Sbjct: 245 NAMVLALANHGRVQDSLDLFDRMTRVEGLVPNAITFVAVLSACNHGGLVDEGRRYFAAMV 304

Query: 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA-CRTFKRLEL 228
           S + I+P++EHYG MVD+L RAG IEEA  ++  M   PD ++WR+LL A C+    LEL
Sbjct: 305 SDHGIRPRIEHYGCMVDILARAGFIEEALDVVAGMNCRPDSIIWRSLLDACCKRNAGLEL 364

Query: 229 GE----VAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELA 284
            E    +A+      + G YVLLS +Y   +RW+    +R++M ++G +K  G S +E+ 
Sbjct: 365 SEAMAKLALDVPDDAVSGVYVLLSRVYASAQRWNDVGMIRQLMSQEGFKKEPGFSSIEMD 424

Query: 285 GVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPA-TELVLMDVSEEEKEGNLYHHS 343
           G +HQF AGD SHP+++ I   L  + QR  S G+ P  +E  ++   +  K   L  HS
Sbjct: 425 GSVHQFVAGDTSHPQSEEIYVKLDEIQQRLTSAGYKPDLSEAPMVADIDRTKGATLRLHS 484

Query: 344 EKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGL 403
           E+LA+++G+L  +PG  IRI KNLR+C DCH+  K+IS+L    IIVRDRIRFH F+ G 
Sbjct: 485 ERLAISFGLLNATPGAPIRILKNLRVCKDCHTISKLISKLYNVEIIVRDRIRFHHFKDGS 544

Query: 404 CSCGDYW 410
           CSC DYW
Sbjct: 545 CSCKDYW 551



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 75/193 (38%), Gaps = 54/193 (27%)

Query: 77  ILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME-- 134
           +++ +L+  Y+ CG+   A  VF  V    +  WN  +  +A +G    A  +F +M+  
Sbjct: 100 VVANSLVHFYASCGRPGAALAVFRRVPDRSLVSWNTAVDALAGNGDHLAALDLFREMQRD 159

Query: 135 MFNVLPDSITFLGLLTACS----------------------------------------- 153
             ++ PD+ T   +L AC+                                         
Sbjct: 160 RPDLAPDAYTVQSVLGACAATGALSLGLYAHALLLRELGGAGHASPVSRDVLINNSLVDL 219

Query: 154 --HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT----ME 207
              CG VE  R+ FD M  R      L  + AMV  L   G ++++  L   MT    + 
Sbjct: 220 YGKCGAVELARQVFDRMSER-----DLASWNAMVLALANHGRVQDSLDLFDRMTRVEGLV 274

Query: 208 PDVVVWRALLSAC 220
           P+ + + A+LSAC
Sbjct: 275 PNAITFVAVLSAC 287


>gi|326532850|dbj|BAJ89270.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  347 bits (889), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 176/421 (41%), Positives = 251/421 (59%), Gaps = 16/421 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE------PDKFTFASVIYGCARL 54
           M  +DV SWN+++ G  +      AL  F  ++ S  E      P+  T  + +  CA++
Sbjct: 165 MTVRDVASWNALLAGLAQGTEPSLALALFHRLVRSFQELPPREAPNVVTIIAALSACAQI 224

Query: 55  GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV--WNA 112
           G+L     VH    +  +  N  +  ALIDMYSKCG +  A EVF +++R D ++  +N 
Sbjct: 225 GSLQDGLCVHEFARKIGVGGNVRVCNALIDMYSKCGSLARALEVFHSIKREDRTLVSYNT 284

Query: 113 MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY 172
            I  +++HG   DA  +F +M    + PD +T++ +L  C+H GLV+EG + F  MR   
Sbjct: 285 AIQAISMHGHGGDALKLFDEMPTC-IEPDEVTYIAVLCGCNHAGLVDEGLRVFHGMR--- 340

Query: 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA 232
            + P ++HYG +VDLLGRAG + EAY  I SM    D+V+W+ LL A +T   +EL EVA
Sbjct: 341 -VPPNVKHYGTVVDLLGRAGRLAEAYDTIKSMPFPADIVLWQTLLGASKTHGDVELAEVA 399

Query: 233 IVNISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQ 289
              ++ L   + GDYVLLSN+Y    RW     VR+ M+   VRK  G S+ E++GV+H+
Sbjct: 400 ATKLTELGSNVDGDYVLLSNVYASKARWADVGRVRDTMRSNDVRKVPGFSYTEISGVMHK 459

Query: 290 FKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALA 349
           F  GD+ HP  Q I + LG ++ R    G+ P T  VL D+ EEEK+  L +HSEKLA+A
Sbjct: 460 FINGDKEHPRLQEIYRALGEIMSRIGELGYEPETSNVLHDIGEEEKQYALSYHSEKLAIA 519

Query: 350 YGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDY 409
           +G++ T PG  +R+ KN+RIC DCH   K+IS+   R II+RDR RFHRFE G CSC DY
Sbjct: 520 FGLIATPPGETLRVIKNIRICGDCHVVAKLISKAYGRAIIIRDRARFHRFEDGQCSCSDY 579

Query: 410 W 410
           W
Sbjct: 580 W 580



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 85/179 (47%), Gaps = 7/179 (3%)

Query: 40  DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF 99
           D  + +  +   AR         +H L++      +  L   L+D Y+KC ++  A++VF
Sbjct: 103 DALSLSFALKASARCSDGPATLQLHALVLRLGCTADVRLITTLLDSYAKCDELASARKVF 162

Query: 100 DTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM-EMFNVL-----PDSITFLGLLTACS 153
           D +   DV+ WNA+++G+A     + A A+F ++   F  L     P+ +T +  L+AC+
Sbjct: 163 DEMTVRDVASWNALLAGLAQGTEPSLALALFHRLVRSFQELPPREAPNVVTIIAALSACA 222

Query: 154 HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
             G +++G    +  R +  +   +    A++D+  + G +  A  +  S+  E   +V
Sbjct: 223 QIGSLQDGLCVHEFAR-KIGVGGNVRVCNALIDMYSKCGSLARALEVFHSIKREDRTLV 280


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score =  347 bits (889), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 174/417 (41%), Positives = 258/417 (61%), Gaps = 8/417 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K VV+WNS++ GF +N   ++A+R F +M  S  EPD  TF S++  CA+ GA++  
Sbjct: 168 MPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGAISLG 227

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH  I+ + +++N  L  ALI++YS+CG +  A+EVFD ++  +V+ W AMIS    H
Sbjct: 228 SWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTH 287

Query: 121 GLAADASAIFTKME-MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           G    A  +F KME     +P+++TF+ +L+AC+H GLVE+GR  +  M   Y + P +E
Sbjct: 288 GYGKQAVDLFNKMEDDCGSIPNNVTFVAVLSACAHAGLVEDGRSVYKRMTESYRLIPGVE 347

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV---VWRALLSACRTFKRLELG-EVA--I 233
           H+  +VD+LGRAG ++EAY  I  +    +     +W A+L AC+  +  +LG E+A  +
Sbjct: 348 HHVCIVDMLGRAGFLDEAYRFIQQLDATGNATAPALWTAMLGACKMHRNYDLGVEIAKRL 407

Query: 234 VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
           + +     G +V+LSN+Y    + D   ++R+ M +  +RK  G S +E+    + F  G
Sbjct: 408 IALEPENPGHHVMLSNIYALSGKTDEVSHIRDRMMRNNLRKQVGYSIIEVENKTYLFSMG 467

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           D SH E   I + L +LI R K  G+ P +E V+  V EEEKE  L +HSEKLA+A+G+L
Sbjct: 468 DESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLL 527

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           KT   + I + KNLRIC DCHS  K IS +  R IIVRD++RFH F+ G CSC DYW
Sbjct: 528 KTVD-SAITVVKNLRICEDCHSAFKYISIVSNRQIIVRDKLRFHHFQNGSCSCLDYW 583



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 114/219 (52%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  D   +NS+I    +       + ++R MLSS V P  +TF SVI  CA L AL   
Sbjct: 67  VPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIG 126

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   +     L+  + AAL+  YSKCG ++ A++VFD +    V  WN+++SG   +
Sbjct: 127 KGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQN 186

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GLA DA  +F +M      PDS TF+ LL+AC+  G +  G     ++ S   +   ++ 
Sbjct: 187 GLAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGAISLGSWVHQYIVSE-GLDVNVKL 245

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A+++L  R G + +A  +   M  E +V  W A++SA
Sbjct: 246 GTALINLYSRCGDVGKAREVFDKMK-ETNVAAWTAMISA 283


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  346 bits (888), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 171/414 (41%), Positives = 246/414 (59%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++DVV+W +MI G+ +N   DEA+  FR M+ S  EP+ +T A+V+  CA L  L + 
Sbjct: 389 MSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYG 448

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
             +H   I    E +  +S +++ MY++ G +  A+ VFD V  R +   W +MI  +A 
Sbjct: 449 KQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQ 508

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HGL  DA  +F +M    V PD ITF+G+L+AC+H G V+EG++YF  ++ ++ I P++ 
Sbjct: 509 HGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMS 568

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HY  MVDLL RAG   EA   I  M +EPD + W +LLSACR  K  +L E+A   +++I
Sbjct: 569 HYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSI 628

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G Y  LSN+Y    RW+ A  + +  K K V+K  G SW  +   +H F A D  
Sbjct: 629 DPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVL 688

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+   + +    +    K  GF+P  + VL DV +E KE  L  HSEKLA+A+G++ T 
Sbjct: 689 HPQRDTVYRTAAKMWDDIKKAGFVPDLQSVLHDVDDELKEEMLSRHSEKLAIAFGLVSTP 748

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             T +RI KNLR+C+DCH+ IK IS++  R II+RD  RFH F+ G CSC DYW
Sbjct: 749 EKTTLRIMKNLRVCNDCHTAIKFISKVADREIILRDATRFHHFKDGFCSCKDYW 802



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 126/251 (50%), Gaps = 36/251 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D VSW  M+ G  R  RF EA++ F +M++  + P +FT  +V+  CA   A    
Sbjct: 122 MPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVG 181

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS----- 115
             VH+ +++  +     ++ ++++MY KCG  + A+ VF+ +    VS WNAM+S     
Sbjct: 182 RKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHL 241

Query: 116 --------------------------GVAIHGLAADASAIFTKMEMFNVL-PDSITFLGL 148
                                     G   +GL A A   F++M  ++ + PD  T   +
Sbjct: 242 GRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSV 301

Query: 149 LTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM- 206
           L+AC++ G+V  G++   + +RSR     Q+ +  A++ +  ++G +E A G++    M 
Sbjct: 302 LSACANLGMVSIGKQVHAYILRSRMPYIGQVTN--ALISMYAKSGSVENARGVMQQAVMA 359

Query: 207 EPDVVVWRALL 217
           + +V+ + ALL
Sbjct: 360 DLNVISFTALL 370



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 125/268 (46%), Gaps = 40/268 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           MPD+ +VSWN++I G+ +N    +AL FF  MLS S + PD+FT  SV+  CA LG ++ 
Sbjct: 254 MPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSI 313

Query: 60  AYWVHNLIIEKKI---------------------------------ELNFILSAALIDMY 86
              VH  I+  ++                                 +LN I   AL++ Y
Sbjct: 314 GKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGY 373

Query: 87  SKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFL 146
            K G ++ A+E+FD +   DV  W AMI G   +G   +A  +F  M      P+S T  
Sbjct: 374 VKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVA 433

Query: 147 GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY-GAMVDLLGRAGHIEEAYGLITSMT 205
            +L+ C+    +E G++   H ++  S+Q Q      ++V +  R+G +  A  +   + 
Sbjct: 434 AVLSVCASLACLEYGKQI--HCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVH 491

Query: 206 MEPDVVVWRALLSACRTFKRLELGEVAI 233
              + V W +++ A     +  LGE A+
Sbjct: 492 WRKETVTWTSMIVA---LAQHGLGEDAV 516



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 2/149 (1%)

Query: 81  ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP 140
           +L+ +Y+K G++  A+ VF  +   D   W  M+ G+   G   +A  +F  M    + P
Sbjct: 101 SLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSP 160

Query: 141 DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL 200
              T   +L++C+       GRK    +  +  +   +    +++++ G+ G  E A  +
Sbjct: 161 TQFTLTNVLSSCAATEARGVGRKVHSFV-VKLGLSSCVPVANSVLNMYGKCGDAETARAV 219

Query: 201 ITSMTMEPDVVVWRALLSACRTFKRLELG 229
              M  E  V  W A++S      R++L 
Sbjct: 220 FERMP-ERSVSSWNAMVSLDAHLGRMDLA 247


>gi|79527297|ref|NP_198857.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171829|sp|Q9FND6.1|PP411_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g40410, mitochondrial; Flags: Precursor
 gi|10178153|dbj|BAB11598.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|17065126|gb|AAL32717.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|30725418|gb|AAP37731.1| At5g40410 [Arabidopsis thaliana]
 gi|332007162|gb|AED94545.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 608

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 181/411 (44%), Positives = 248/411 (60%), Gaps = 4/411 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K++VSWN+MI   ++N   ++ L +F        EPD+ TF +V+  C  +G +  A  +
Sbjct: 198 KNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGI 257

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H LI+      N  ++ AL+D+YSK G+++ +  VF  +   D   W AM++  A HG  
Sbjct: 258 HGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFG 317

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            DA   F  M  + + PD +TF  LL ACSH GLVEEG+ YF+ M  RY I P+L+HY  
Sbjct: 318 RDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSC 377

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM--- 240
           MVDLLGR+G +++AYGLI  M MEP   VW ALL ACR +K  +LG  A   +  L    
Sbjct: 378 MVDLLGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRD 437

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
           G +YV+LSN+Y     W  A  +R +MK+KG+ ++ G S++E    IH+F  GD SHPE+
Sbjct: 438 GRNYVMLSNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHPES 497

Query: 301 QAIDKILGSLIQRTKSE-GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           + I K L  + ++ KSE G+   TE VL DV E+ KE  +  HSEK+A+A+G+L  SP  
Sbjct: 498 EKIQKKLKEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFGLLVVSPME 557

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            I I KNLRIC DCH   K IS + +R II+RD  RFH F  G CSC DYW
Sbjct: 558 PIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDGSCSCSDYW 608



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 104/229 (45%), Gaps = 14/229 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKV--EPDKFTFASVIYGCARLGALN 58
           MP++D+VSWNS+I G+       +       M+ S+V   P++ TF S+I  C   G+  
Sbjct: 92  MPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSKE 151

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H L+++  +     +  A I+ Y K G +  + ++F+ +   ++  WN MI    
Sbjct: 152 EGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHL 211

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVE-----EGRKYFDHMRSRYS 173
            +GLA    A F         PD  TFL +L +C   G+V       G   F        
Sbjct: 212 QNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNKC 271

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRT 222
           I        A++DL  + G +E++  +   +T  PD + W A+L+A  T
Sbjct: 272 ITT------ALLDLYSKLGRLEDSSTVFHEIT-SPDSMAWTAMLAAYAT 313



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 82/162 (50%), Gaps = 5/162 (3%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNV--L 139
           L+  Y + G    A+++FD +   D+  WN++ISG +  G       + ++M +  V   
Sbjct: 72  LVGCYLRLGHDVCAEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFR 131

Query: 140 PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199
           P+ +TFL +++AC + G  EEGR     +  ++ +  +++   A ++  G+ G +  +  
Sbjct: 132 PNEVTFLSMISACVYGGSKEEGR-CIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCK 190

Query: 200 LITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
           L   ++++ ++V W  ++         E G +A  N+SR +G
Sbjct: 191 LFEDLSIK-NLVSWNTMIVIHLQNGLAEKG-LAYFNMSRRVG 230


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 168/415 (40%), Positives = 257/415 (61%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE--PDKFTFASVIYGCARLGALN 58
           MP ++VVSW++MI  + +N +  EALR FREM++   +  P+  T  SV+  CA L AL 
Sbjct: 243 MPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALE 302

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H  I+ + ++    + +AL+ MY +CGK+ + + VFD +   DV  WN++IS   
Sbjct: 303 QGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYG 362

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG    A  IF +M      P  +TF+ +L ACSH GLVEEG++ F+ M   + I+PQ+
Sbjct: 363 VHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQV 422

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVN 235
           EHY  MVDLLGRA  ++EA  ++  M  EP   VW +LL +CR    +EL E A   +  
Sbjct: 423 EHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFA 482

Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           +     G+YVLL+++Y   + WD  + V+++++ +G++K  G+ W+E+   ++ F + D 
Sbjct: 483 LEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSMDE 542

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
            +P  + I   L  L +  K +G++P T+ VL ++  EEKE  +  HSEKLALA+G++ T
Sbjct: 543 FNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINT 602

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           S G  IRI+KNLR+C DCH + K IS+ + + I+VRD  RFHRF+ G+CSCGDYW
Sbjct: 603 SKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 109/234 (46%), Gaps = 20/234 (8%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           +S N +I    +  +  +ALR    +LS +  P + T+  +I  C    +L+    VH  
Sbjct: 47  ISNNQLIQSLCKEGKLKQALR----VLSQESSPSQQTYELLILCCGHRSSLSDGLRVHRH 102

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           I++   + +  L+  LI MYS  G +  A++VFD  ++  + VWNA+   + + G   + 
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTAC--SHCGL--VEEGRKYFDHMRSRYSIQPQLEHYG 182
             ++ KM    V  D  T+  +L AC  S C    + +G++   H+ +R      +    
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHL-TRRGYNSHVYIMT 221

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS----------ACRTFKRL 226
            +VD+  R G ++ A  +   M +  +VV W A+++          A RTF+ +
Sbjct: 222 TLVDMYARFGCVDYASYVFNGMPVR-NVVSWSAMIACYAKNGKAFEALRTFREM 274



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 106/224 (47%), Gaps = 12/224 (5%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA----RLGALNH 59
           + +  WN++          +E L  + +M    VE D+FT+  V+  C         L  
Sbjct: 141 RTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTK 200

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  +  +    +  +   L+DMY++ G +  A  VF+ +   +V  W+AMI+  A 
Sbjct: 201 GKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAK 260

Query: 120 HGLAADASAIFTKM--EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM--RSRYSIQ 175
           +G A +A   F +M  E  +  P+S+T + +L AC+    +E+GR    ++  R   SI 
Sbjct: 261 NGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSIL 320

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           P +    A+V + GR G ++    +   M  + DVV W +L+S+
Sbjct: 321 PVI---SALVTMYGRCGKLDVGQRVFDRM-HDRDVVSWNSLISS 360


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 174/411 (42%), Positives = 260/411 (63%), Gaps = 9/411 (2%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           VVS+N+MI   VR++R  EAL  FREM +  ++    T  SV+  CA LGAL    W+H 
Sbjct: 208 VVSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACALLGALELGRWIHE 267

Query: 66  LIIEKKIELNFIL--SAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
            +  +K++L+ ++  + ALIDMY KCG ++ A  VF  ++  D   W+ MI   A H   
Sbjct: 268 YV--RKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSYG 325

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A ++F +M+   + PD +TFLG+L ACSH GLV EG +YFD MR  + + P ++HYG 
Sbjct: 326 REAISLFEEMKKQGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSMR-EFGLVPGIKHYGC 384

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
           + DLL R+G ++ AY  I  + ++P  ++WR LLSAC +    +LG+     I+ +    
Sbjct: 385 VADLLARSGQLDRAYEFIDELPIKPTAILWRTLLSACGSRGDADLGKQVFERILELDDSH 444

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
           GGDYV+ SN+     RW+    VR++M +KGV K  G S +E+   +H+F AGD  HP++
Sbjct: 445 GGDYVIFSNLCANTGRWEEMNRVRKLMNEKGVVKVPGCSSIEVDNRVHEFFAGDGRHPKS 504

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVL-MDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
               +++  +I++ K  G++P T  V  +++ EEEK  +L +HSEKLA+++G+L TSPGT
Sbjct: 505 LDARRMVDGVIEQLKLAGYVPNTSHVFHVEMGEEEKAVSLRYHSEKLAISFGLLNTSPGT 564

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            +R+ KNLR+C DCHS  K++S +  R II+RD  RFH FE G+CSCGDYW
Sbjct: 565 TLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 615



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 110/222 (49%), Gaps = 9/222 (4%)

Query: 5   DVVSWNSMIGGFVR-----NAR--FDEALRFFREMLSSKVEPDKFTFASVIYGCARLGAL 57
           DVV +N+++ G+ R      AR   +EA R F  ML   V PD +TF S++  CA   A 
Sbjct: 99  DVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGVAPDTYTFVSLLKACAAARAG 158

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
                 H + ++     +  +   LI+MY++CG  + A+ +F  V    V  +NAMI+  
Sbjct: 159 EEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVVSYNAMITAA 218

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
                  +A  +F +M+   +   S+T + +L+AC+  G +E GR   +++R +  +   
Sbjct: 219 VRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEYVR-KVQLDSL 277

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++   A++D+ G+ G +E+A  +   M    D   W  ++ A
Sbjct: 278 VKVNTALIDMYGKCGSLEDAISVFQGMESR-DRQAWSVMIVA 318



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 1/134 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D  +W+ MI  +  ++   EA+  F EM    ++PD  TF  V+Y C+  G ++  
Sbjct: 304 MESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYACSHSGLVSEG 363

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV-WNAMISGVAI 119
               + + E  +         + D+ ++ G++  A E  D +     ++ W  ++S    
Sbjct: 364 LQYFDSMREFGLVPGIKHYGCVADLLARSGQLDRAYEFIDELPIKPTAILWRTLLSACGS 423

Query: 120 HGLAADASAIFTKM 133
            G A     +F ++
Sbjct: 424 RGDADLGKQVFERI 437


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 165/411 (40%), Positives = 255/411 (62%), Gaps = 4/411 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGC-ARLGALNHAYW 62
           KDV++W++M+ G+ +    +EA + F ++    ++P++FTF S+I  C A   ++     
Sbjct: 466 KDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQ 525

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            H   I+ ++     +S++L+ +Y+K G I+ A E+F   +  D+  WN+MISG A HG 
Sbjct: 526 FHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQ 585

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A  A  +F +M+  N+  D+ITF+G+++AC+H GLV +G+ YF+ M + + I P +EHY 
Sbjct: 586 AKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYS 645

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            M+DL  RAG + +A  +I  M   P   VWR +L+A R  + +ELG++A   I+++   
Sbjct: 646 CMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQ 705

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
               YVLLSN+Y     W    NVR++M K+ V+K  G SW+E+    + F AGD SHP 
Sbjct: 706 HSAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPL 765

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           +  I   L  L  R +  G+ P T  V  D+ +E+KE  L HHSE+LA+A+G++ T P  
Sbjct: 766 SDHIYSKLSELNTRLRDVGYQPDTNYVFHDIEDEQKETILSHHSERLAIAFGLIATLPEI 825

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            ++I KNLR+C DCHS+IK++S + +R I+VRD  RFH F+GGLCSCGDYW
Sbjct: 826 PLQIVKNLRVCGDCHSFIKLVSLVEKRYIVVRDSNRFHHFKGGLCSCGDYW 876



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 120/224 (53%), Gaps = 21/224 (9%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           + VVSW +MI G+++N   D+A+  F  M    V+P+ FT+++++        + HA ++
Sbjct: 369 QSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTIL-------TVQHAVFI 421

Query: 64  ---HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H  +I+   E +  +  AL+D + K G I  A +VF+ ++  DV  W+AM++G A  
Sbjct: 422 SEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQA 481

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACS-HCGLVEEGRKYFDHMRSRYSIQPQLE 179
           G   +A+ IF ++    + P+  TF  ++ AC+     VE+G+++       Y+I+ +L 
Sbjct: 482 GETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFH-----AYAIKLRLN 536

Query: 180 H----YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +      ++V L  + G+IE A+ +      E D+V W +++S 
Sbjct: 537 NALCVSSSLVTLYAKRGNIESAHEIFKRQK-ERDLVSWNSMISG 579



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 109/220 (49%), Gaps = 3/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D+DVVSWNS++ G+  N   D+    F  M      PD +T ++VI   A  GA+   
Sbjct: 163 MGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIG 222

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L+++   E   ++  +LI M SK G ++ A+ VFD ++  D   WN+MI+G  I+
Sbjct: 223 MQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVIN 282

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLE 179
           G   +A   F  M++    P   TF  ++ +C+   L E G     H ++ +  +     
Sbjct: 283 GQDLEAFETFNNMQLAGAKPTHATFASVIKSCA--SLKELGLVRVLHCKTLKSGLSTNQN 340

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A++  L +   I++A+ L + M     VV W A++S 
Sbjct: 341 VLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISG 380



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 110/240 (45%), Gaps = 16/240 (6%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P +D+   N ++  + R  +  EAL  F  +  S + PD +T + V+  CA  G+ N   
Sbjct: 63  PLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCA--GSFNGTV 120

Query: 62  --WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              VH   ++  +  +  +  +L+DMY+K G ++  + VFD +   DV  WN++++G + 
Sbjct: 121 GEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSW 180

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +        +F  M++    PD  T   ++ A ++ G V  G +    +  +   + +  
Sbjct: 181 NRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQ-IHALVVKLGFETERL 239

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRAL----------LSACRTFKRLELG 229
              +++ +L ++G + +A  +  +M    D V W ++          L A  TF  ++L 
Sbjct: 240 VCNSLISMLSKSGMLRDARVVFDNME-NKDSVSWNSMIAGHVINGQDLEAFETFNNMQLA 298



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++D+VSWNSMI G+ ++ +  +AL  F EM    +E D  TF  VI  CA  G +     
Sbjct: 567 ERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQN 626

Query: 63  VHNLII-EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIH 120
             N++I +  I       + +ID+YS+ G +  A ++ + +      +VW  +++   +H
Sbjct: 627 YFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVH 686


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 170/416 (40%), Positives = 265/416 (63%), Gaps = 6/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           MP +D VSWN++I G+++N   +EA+  +  M   + ++  + TF SV+   + LGAL  
Sbjct: 332 MPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQ 391

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H L I+  + ++  +   LID+Y+KCGK+  A  +F+ + R     WNA+ISG+ +
Sbjct: 392 GMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGV 451

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG  A+A  +F++M+   + PD +TF+ LL ACSH GLV++GR +FD M+  Y I P  +
Sbjct: 452 HGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAK 511

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY  M D+LGRAG ++EA+  I +M ++PD  VW ALL ACR    +E+G+VA  N+  L
Sbjct: 512 HYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFEL 571

Query: 240 MG---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVL+SNMY  + +WD  + VR +++++ ++K+ G S +E+   ++ F +G+++
Sbjct: 572 DPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQT 631

Query: 297 --HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
             HP+ + I   L SL+ + +S G++     VL DV ++EKE  L +HSE+LA+A+GI+ 
Sbjct: 632 EPHPQHEEIQAELRSLLAKIRSVGYVSDYSFVLQDVEDDEKEHILNNHSERLAIAFGIIN 691

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T   T + I KNLR+C DCH+  K IS++  R IIVRD  RFH F+ G CSCGD+W
Sbjct: 692 TPSRTPLHIYKNLRVCGDCHNATKYISQITEREIIVRDSNRFHHFKDGHCSCGDFW 747



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 108/219 (49%), Gaps = 1/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++DV +WN+M+ G  RNAR  EA+  F  M+   V  D  T +SV+  C  LG    A
Sbjct: 129 MSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLA 188

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++  ++    +  ALID+Y K G ++ A+ VF  ++  D+  WN++ISG    
Sbjct: 189 LVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQR 248

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  A A  +F  M    V PD +T + L +A +  G     +    ++  R      +  
Sbjct: 249 GQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIA 308

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A+VD+  +  +IE A  +  SM ++ D V W  L++ 
Sbjct: 309 GNAIVDMYAKLSNIEAAQRMFDSMPVQ-DSVSWNTLITG 346



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 141/319 (44%), Gaps = 58/319 (18%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D+V+WNS+I G  +  +   AL+ F+ M  S V PD  T  S+    A+ G    A
Sbjct: 230 MECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSA 289

Query: 61  YWVHNLIIEKKIELNFILSA-ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             +H  ++ +  +++ I++  A++DMY+K   I+ A+ +FD++   D   WN +I+G   
Sbjct: 290 KSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQ 349

Query: 120 HGLAADASAIFTKMEMFNVLPD-SITFLGLLTACSHCGLVEEGRK--------------- 163
           +GLA +A   +  M+    L     TF+ +L A SH G +++G +               
Sbjct: 350 NGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVY 409

Query: 164 --------------------YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
                                F+ M  R S  P    + A++  LG  GH  EA  L + 
Sbjct: 410 VGTCLIDLYAKCGKLAEAMLLFEKM-PRRSTGP----WNAIISGLGVHGHGAEALTLFSR 464

Query: 204 MTME---PDVVVWRALLSAC---------RTFKRLELGEVAIVNISRLMGGDYVLLSNMY 251
           M  E   PD V + +LL+AC         R+F  +      IV I++     Y  +++M 
Sbjct: 465 MQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAK----HYACMADML 520

Query: 252 CYLKRWDTAENVREIMKKK 270
               + D A N  + M  K
Sbjct: 521 GRAGQLDEAFNFIQNMPIK 539



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 128/273 (46%), Gaps = 29/273 (10%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSS--KVEPDKFTFASVIYGCARLGALNHAYWVHNLI 67
           N++I  F R A    A    R +LS      PD FTF S+I       +   A  +H   
Sbjct: 37  NTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAPSNAS---AAQLHACA 93

Query: 68  IEKK-IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           +    +  +   S +L+  Y + G+I  A +VFD +   DV  WNAM+SG+  +  AA+A
Sbjct: 94  LRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEA 153

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLEHYGAMV 185
             +F +M    V  D++T   +L  C   G  ++      H+ + ++ +  +L    A++
Sbjct: 154 VGLFGRMVGEGVAGDTVTVSSVLPMCVLLG--DQVLALVMHVYAVKHGLDKELFVCNALI 211

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC----RTFKRLELGE----------- 230
           D+ G+ G +EEA  +   M    D+V W +++S C    +T   L++ +           
Sbjct: 212 DVYGKLGMLEEAQCVFHGMECR-DLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDV 270

Query: 231 VAIVNISRLM--GGDYVLLSNMYCYLKR--WDT 259
           + +V+++  +  GGD     +++CY+ R  WD 
Sbjct: 271 LTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDV 303


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 167/413 (40%), Positives = 253/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M DK  V+W+SM+ G+V++  ++EAL  +R      +E ++FT +SVI  C+ L AL   
Sbjct: 225 MQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG 284

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H +I +     N  ++++ +DMY+KCG ++ +  +F  VQ  ++ +WN +ISG A H
Sbjct: 285 KQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKH 344

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +   +F KM+   + P+ +TF  LL+ C H GLVEEGR++F  MR+ Y + P + H
Sbjct: 345 ARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVH 404

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  MVD+LGRAG + EAY LI S+  EP   +W +LL++CR  K LEL EVA   +  L 
Sbjct: 405 YSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELE 464

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G++VLLSN+Y   K+W+     R++++   V+K +G+SW+++   +H F+ G+ SH
Sbjct: 465 PENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGQSWIDIKDKVHIFRVGESSH 524

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + I  +L +L+   +  G+ P+ E  L DV   +KE  L  HSEKLAL +G++    
Sbjct: 525 PRIREICTMLDNLVIELRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPE 584

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G+ +RI KNLRIC DCH ++K  S   RR IIVRD  RFH F  G CSCG++W
Sbjct: 585 GSTVRIMKNLRICVDCHEFMKAASMATRRFIIVRDANRFHHFSDGHCSCGEFW 637



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 116/220 (52%), Gaps = 4/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGC-ARLGALNH 59
           M ++ +VSWN+MIG + RN    EAL  F EM +   +  +FT +SV+  C A   AL  
Sbjct: 124 MLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDAL-E 182

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H L ++  ++LN  +  AL+D+Y+KCG I  A +VF+++Q      W++M++G   
Sbjct: 183 CKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQ 242

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
                +A  ++ + +  ++  +  T   ++ ACS+   + EG++    +R +      + 
Sbjct: 243 SKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIR-KSGFGSNVF 301

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              + VD+  + G + E+Y +I S   E ++ +W  ++S 
Sbjct: 302 VASSAVDMYAKCGSLRESY-IIFSEVQEKNIELWNTIISG 340



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 96/197 (48%), Gaps = 10/197 (5%)

Query: 30  REMLSSKVEPDKFT------FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALI 83
           +E LS     D+F       F  ++  CAR GA+  A   H   +  +++ +  LS  LI
Sbjct: 46  QEELSPGRYSDEFNVVQASDFIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLI 105

Query: 84  DMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSI 143
           + YSKCG +++A++VFD +    +  WN MI     + + ++A  IF +M          
Sbjct: 106 NAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEF 165

Query: 144 TFLGLLTAC-SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
           T   +L+AC ++C  +E  + +   M++  S+   L    A++DL  + G I +A  +  
Sbjct: 166 TISSVLSACGANCDALECKKLHCLSMKT--SLDLNLYVGTALLDLYAKCGMINDAVQVFE 223

Query: 203 SMTMEPDVVVWRALLSA 219
           SM  +   V W ++++ 
Sbjct: 224 SMQ-DKSSVTWSSMVAG 239


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 178/416 (42%), Positives = 257/416 (61%), Gaps = 7/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD VSW++MI GF  N  F+EA  FFRE+    + P++ +   V+  CA+ GAL   
Sbjct: 229 MPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFG 288

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV--QRNDVSVWNAMISGVA 118
             +H  I +  +     ++ AL+D YSKCG + MA+ VF+ +  +RN VS W +M++ +A
Sbjct: 289 KILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVS-WTSMMAALA 347

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG   +A  IF KME   + PD I F+ LL ACSH GLVE+G +YFD M+  Y+I+P +
Sbjct: 348 MHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSI 407

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           EHYG MVDL GRAG +++AY  +  M +    ++WR LL AC     ++L E     +S 
Sbjct: 408 EHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSE 467

Query: 239 L---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L      D+VLLSN Y    +W  A +VR  M ++ + K+ G S +E+  +++ F AG +
Sbjct: 468 LDPNNSSDHVLLSNAYAVAGKWKDAASVRRSMTEQRITKTPGWSMIEVDKIMYTFLAGTK 527

Query: 296 SHPEAQAIDKILGSLIQRTKSE-GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
            +   +   K L  +I+R + E G++P    VL D+ EEEKEG++  HSEKLA+A+GI +
Sbjct: 528 QYKITEEAYKKLKEIIRRLRVEGGYVPEIGRVLHDIEEEEKEGSVSVHSEKLAVAFGIAR 587

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              G  IRI KNLRIC DCH+ +K+IS++ +  I+VRDR RFH F+ G CSC DYW
Sbjct: 588 LCKGRTIRIVKNLRICRDCHAVMKLISQIYKVEIVVRDRSRFHSFKDGYCSCRDYW 643



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 104/234 (44%), Gaps = 13/234 (5%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNHA 60
           P+ DV   N++I G   + R  ++L  F EM  +S   PD F+FA ++   A L ++   
Sbjct: 66  PNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVG 125

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   +   ++ +  +   LI MY +CG +  A++VFD +   +   WNAM++     
Sbjct: 126 IQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRG 185

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G       +F  M + N++  ++   G   A    G +E  R+ F  M  +  +      
Sbjct: 186 GDMKGGRELFDLMPVRNLMSWNVMLAGYTKA----GELELAREMFLEMPMKDDVS----- 236

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGEV 231
           +  M+      G+ EEA+     +    M P+      +LSAC     LE G++
Sbjct: 237 WSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKI 290


>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
 gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 171/415 (41%), Positives = 257/415 (61%), Gaps = 6/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D+V+WN+MI  + +     EALR +  M +  V  D FT   ++  C+ +GALN  
Sbjct: 171 MPERDLVAWNAMISCYSQAGYHQEALRVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMG 230

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H +  EK +  N  +  ALIDMY+KCG +  A EVF+ + R D   WN+MI G  +H
Sbjct: 231 VKLHRIASEKGLLRNVFVGNALIDMYAKCGSLDGALEVFNGMPR-DAFTWNSMIVGFGVH 289

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A   F +M    V P+SI FLGLL  CSH GLVEEG ++F  M S+++++P ++H
Sbjct: 290 GFGDEAIYFFNQMLEAGVRPNSIAFLGLLCGCSHQGLVEEGVEFFHQMSSKFNVKPGIKH 349

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG +VD+ GRAG +E+A  +I     + D V+WR LLS+ +  K + +GE+A+ N+S+L 
Sbjct: 350 YGCIVDMYGRAGKLEKALEIIGDSPWQDDPVLWRILLSSSKIHKNVVIGEIAMRNLSQLG 409

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               GD VLL+ +Y           +R+++KK+G++ + G SW+E++  +H+F   D+SH
Sbjct: 410 AVNAGDCVLLATIYAGANDEQGVARMRKLIKKQGIKTTPGWSWIEVSDQVHRFVVDDKSH 469

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLM--DVSEEEKEGNLYHHSEKLALAYGILKT 355
           P+++ I + L  +  +    G++      +     SEE  E +  +HSEKLA+A+G+ KT
Sbjct: 470 PDSEMIYQKLEEVTHKATMAGYVEDKSQFIFHGSCSEECLESSSTYHSEKLAIAFGLAKT 529

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             GT +RI KNLR+C DCH + K +SR   R IIVRDR+RFH F+GGLCSC DYW
Sbjct: 530 PEGTSLRIVKNLRVCRDCHEFTKFVSRAFNRDIIVRDRLRFHHFKGGLCSCRDYW 584



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 105/211 (49%), Gaps = 4/211 (1%)

Query: 8   SWNSMIGGFVRNARFDEALRFFREMLSSKVE-PDKFTFASVIYGCARLGALNHAYWVHNL 66
           +WNS+I GF ++    +A+ ++  ML   V  PD FTF+  +  C R+ AL     VH  
Sbjct: 76  AWNSIIRGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALKKCEEVHGS 135

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           II    E + ++   L+  Y + G +++A+ VFD +   D+  WNAMIS  +  G   +A
Sbjct: 136 IIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGYHQEA 195

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186
             ++  M   NV  D  T +GLL++CSH G +  G K    + S   +   +    A++D
Sbjct: 196 LRVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMGVK-LHRIASEKGLLRNVFVGNALID 254

Query: 187 LLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           +  + G ++ A  +   M    D   W +++
Sbjct: 255 MYAKCGSLDGALEVFNGMPR--DAFTWNSMI 283


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 173/410 (42%), Positives = 244/410 (59%), Gaps = 3/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++VV+WN++I G  +N  F+  L  +  M  S + PDK T  SVI   A L  L     +
Sbjct: 153 RNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQI 212

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   I+        + ++LI MYSKCG ++ + +     +  D  +W++MI+    HG  
Sbjct: 213 HAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRG 272

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F +ME   +  + +TFL LL ACSH GL E+G  +F  M  +Y ++P+LEHY  
Sbjct: 273 EEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTC 332

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD 243
           +VDLLGR+G ++EA  +I SM +E DVV+W+ LLSACR  +  ++       I RL   D
Sbjct: 333 VVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEILRLNPQD 392

Query: 244 ---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
              YVLLSN++   KRW     VR  M+ + V+K  G SWLE+   + QF  GD+SHP +
Sbjct: 393 SATYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQFSMGDKSHPMS 452

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + ID  L  L++  K  G++P T  V  D   EEKE +L +HSEKLA+A+G++   PG+ 
Sbjct: 453 EEIDLYLKELMEEMKLRGYVPDTATVFHDTDSEEKENSLVNHSEKLAIAFGLMNIPPGSP 512

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IR+ KNLRIC DCH  IK+IS +  R IIVRD  RFH F+ G CSCGDYW
Sbjct: 513 IRVMKNLRICSDCHVAIKLISDINNREIIVRDTSRFHHFKHGKCSCGDYW 562



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 125/257 (48%), Gaps = 12/257 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++V +WN+M+ G ++    +  L  FREM      PD+FT  SV+ GCA L A    
Sbjct: 49  MLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAG 108

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +++   E N ++ ++L  MY K G +   ++V   ++  +V  WN +I+G A +
Sbjct: 109 KQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQN 168

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLE 179
           G       ++  M+M  + PD IT + ++++ +    + +G++   H  + +      + 
Sbjct: 169 GHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQI--HAEAIKAGANSAVA 226

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI-----V 234
              +++ +  + G +E++   +      PD V+W ++++A     R   GE A+     +
Sbjct: 227 VLSSLISMYSKCGCLEDSMKALLDCE-HPDSVLWSSMIAAYGFHGR---GEEAVHLFEQM 282

Query: 235 NISRLMGGDYVLLSNMY 251
               L G D   LS +Y
Sbjct: 283 EQEGLGGNDVTFLSLLY 299



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 77/167 (46%), Gaps = 3/167 (1%)

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           N +    LI+ + + G +  A +VFD +   +V+ WNAM+SG+       +   +F +M 
Sbjct: 22  NIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMH 81

Query: 135 MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194
               LPD  T   +L  C+       G++   ++  +Y  +  L    ++  +  ++G +
Sbjct: 82  ELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVL-KYGYEFNLVVGSSLAHMYMKSGSL 140

Query: 195 EEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
            E   +I +M +  +VV W  L++        E G + + N+ ++ G
Sbjct: 141 GEGEKVIKAMRIR-NVVAWNTLIAGNAQNGHFE-GVLDLYNMMKMSG 185


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 169/413 (40%), Positives = 252/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVVSW +++G +    +  E+   F++ML   V+ +K T+  V+  C+   AL   
Sbjct: 392 MPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWG 451

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++  +  +  ++ AL+ MY KCG ++ A  VF+ +   DV  WN +I G+  +
Sbjct: 452 KEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQN 511

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A   +  M+   + P++ TF+ +L+AC  C LVEEGR+ F  M   Y I P  +H
Sbjct: 512 GRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKH 571

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  MVD+L RAGH+ EA  +I ++ ++P   +W ALL+ACR    +E+GE A  +  +L 
Sbjct: 572 YACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLE 631

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YV LS +Y     W     +R+ MK++GV+K  G+SW+E+AG +H F A D+SH
Sbjct: 632 PQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSH 691

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  Q I   L +L ++ KS G++P T  V+ D+ +E KE  + HHSEKLA+AYG++ T P
Sbjct: 692 PRTQEIYAELETLKKQMKSLGYVPDTRFVMHDLDDEGKERAVCHHSEKLAIAYGLISTPP 751

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IRISKNLR+C DCH+  K IS++ +R II RD  RFH F+ G CSCGDYW
Sbjct: 752 GTPIRISKNLRVCTDCHTATKFISKITKREIIARDAHRFHHFKNGECSCGDYW 804



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 112/218 (51%), Gaps = 4/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D VSW ++ G +  +   +E+L+ +  ML  +V P + T+ +V+  C  L AL   
Sbjct: 190 MASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKG 249

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I+E +   +  +S AL  MY KCG  + A+EVF+ +   DV  WN MI G    
Sbjct: 250 KQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDS 309

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR-SRYSIQPQLE 179
           G   +A   F +M    V PD  T+  +L+AC+  G +  G++   H R ++  +   + 
Sbjct: 310 GQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEI--HARAAKDGLVSDVR 367

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              A++++  +AG +++A  +   M  + DVV W  LL
Sbjct: 368 FGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTTLL 404



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 109/251 (43%), Gaps = 33/251 (13%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K VVSWN MI G+       EA   F  M   ++EPDKFTF S++  C+    LN    
Sbjct: 91  NKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGRE 150

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  ++E  +  +  +  ALI MY+KCG ++ A+ VFD +   D   W  +    A  G 
Sbjct: 151 IHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGY 210

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK---------YFDHMRSRYS 173
             ++   +  M    V P  IT++ +L+AC     +E+G++         Y   +R   +
Sbjct: 211 GEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTA 270

Query: 174 IQPQLEHYGA---------------------MVDLLGRAGHIEEAYGLITSMTME---PD 209
           +       GA                     M+     +G +EEA+G    M  E   PD
Sbjct: 271 LTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPD 330

Query: 210 VVVWRALLSAC 220
              +  +LSAC
Sbjct: 331 RATYTTVLSAC 341



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 111/214 (51%), Gaps = 2/214 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +DV++WN+MI GFV + + +EA   F  ML   V PD+ T+ +V+  CAR G L     +
Sbjct: 294 RDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEI 353

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H    +  +  +     ALI+MYSK G ++ A++VFD + + DV  W  ++   A     
Sbjct: 354 HARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQV 413

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            ++   F +M    V  + IT++ +L ACS+   ++ G++    +  +  +   L    A
Sbjct: 414 VESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEV-VKAGLLADLAVTNA 472

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           ++ +  + G +E+A  +   M+M  DVV W  L+
Sbjct: 473 LMSMYFKCGSVEDAIRVFEGMSMR-DVVTWNTLI 505



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 97/229 (42%), Gaps = 43/229 (18%)

Query: 40  DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF 99
           D + +  ++  C +   L     VH  I+   ++ N  ++  L+ +Y+ CG +  A+++F
Sbjct: 27  DSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLF 86

Query: 100 DTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS------ 153
           D      V  WN MISG A  GLA +A  +FT M+   + PD  TF+ +L+ACS      
Sbjct: 87  DKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLN 146

Query: 154 -----------------------------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
                                         CG V + R+ FD M SR  +      +  +
Sbjct: 147 WGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVS-----WTTL 201

Query: 185 VDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELGE 230
                 +G+ EE+     +M  E   P  + +  +LSAC +   LE G+
Sbjct: 202 TGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGK 250



 Score = 44.7 bits (104), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 11/163 (6%)

Query: 138 VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEA 197
           V P+      LL   +HCG V E R+ FD   ++  +      +  M+      G  +EA
Sbjct: 59  VKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVS-----WNVMISGYAHRGLAQEA 113

Query: 198 YGLITSMT---MEPDVVVWRALLSACRTFKRLELG-EVAIVNISRLMGGDYVLLSNMYCY 253
           + L T M    +EPD   + ++LSAC +   L  G E+ +  +   +  D  + + +   
Sbjct: 114 FNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISM 173

Query: 254 LKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
             +  +  + R +      R     SW  L G   +   G+ S
Sbjct: 174 YAKCGSVRDARRVFDAMASRDEV--SWTTLTGAYAESGYGEES 214


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 175/413 (42%), Positives = 243/413 (58%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP K++++   MI G  +N   DE L+ F++M     EP  F FA  +  C+ LGAL + 
Sbjct: 385 MPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENG 444

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  ++    E +  +  A+I MY+KCG ++ A+ VF T+   D+  WN+MI+ +  H
Sbjct: 445 RQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQH 504

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +M    V PD ITFL +LTACSH GLVE+GR YF+ M   Y I P  +H
Sbjct: 505 GHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDH 564

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MVDL  RAG    A  +I SM  +P   VW ALL+ CR    ++LG  A   + +LM
Sbjct: 565 YARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLM 624

Query: 241 ---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y  + RW+    VR++M+ + VRK    SW+E+   +H F   D  H
Sbjct: 625 PQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVH 684

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE  ++ + L  L    K  G++P T+ VL D+  E+KE  L  HSEKLA+ +GI+K  P
Sbjct: 685 PEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPP 744

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  +R+ KN+RIC DCH+  K +S++ RR IIVRDR RFH F+ G CSC DYW
Sbjct: 745 GATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 113/256 (44%), Gaps = 55/256 (21%)

Query: 8   SWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLI 67
           +WN+MI G+V    F EAL   R+M    ++ D  T+ ++I  CA +G+      VH  I
Sbjct: 256 AWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYI 315

Query: 68  IEKKIELN--FILSA--ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA----------- 112
           ++ ++  N  F LS   ALI +Y K  K+  A+++F  +   ++  WNA           
Sbjct: 316 LKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRM 375

Query: 113 --------------------MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC 152
                               MISG+A +G   +   +F +M +    P    F G LTAC
Sbjct: 376 EEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTAC 435

Query: 153 SHCGLVEEGRKYFDHMRSRYSIQPQLEHYG---------AMVDLLGRAGHIEEAYGLITS 203
           S  G +E GR+          +  QL H G         AM+ +  + G +E A  +  +
Sbjct: 436 SVLGALENGRQ----------LHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVT 485

Query: 204 MTMEPDVVVWRALLSA 219
           M    D+V W ++++A
Sbjct: 486 MP-SVDLVSWNSMIAA 500



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 111/272 (40%), Gaps = 53/272 (19%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVI--------------- 48
           +D V +N+MI G+  N     AL  FR M      PD FTF SV+               
Sbjct: 110 RDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQ 169

Query: 49  ---------YGCARLGALNHAYWVHNLIIEKKIELNFILSA------------------- 80
                     GC     LN    V+   +++  EL    SA                   
Sbjct: 170 MHCAVVKTGMGCVSSSVLNALLSVY---VKRASELGISCSAMVSARKLFDEMPKRDELTW 226

Query: 81  -ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVL 139
             +I  Y +   +  A+EVF+ +  N  + WNAMISG    G   +A  +  KM    + 
Sbjct: 227 TTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQ 286

Query: 140 PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ----LEHYGAMVDLLGRAGHIE 195
            D IT+  +++AC++ G  + G++   ++  +  + P     L    A++ L  +   ++
Sbjct: 287 FDDITYTTIISACANVGSFQMGKQVHAYIL-KNELNPNHSFCLSVSNALITLYCKNNKVD 345

Query: 196 EAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
           EA  +  +M +  +++ W A+LS      R+E
Sbjct: 346 EARKIFYAMPVR-NIITWNAILSGYVNAGRME 376


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 169/415 (40%), Positives = 255/415 (61%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P++DVV+  ++I G+ +    +EAL+ FR++    +  +  T+ASV+   + L ALNH 
Sbjct: 224 LPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHG 283

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ ++        +L  +LIDMYSKCG +  A+ +FD++       WNAM+ G + H
Sbjct: 284 KQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKH 343

Query: 121 GLAADASAIFTKMEMFN-VLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQL 178
           G+A +   +F  M   N V PDSIT+L +L+ CSH  L + G + F +M   +  I+P +
Sbjct: 344 GMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDI 403

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVN 235
            HYG +VDLLGRAG +EEA+  I  M   P   +W +LL +CR    +E+G +    ++ 
Sbjct: 404 GHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLE 463

Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           +     G+YV+LSN+Y    +W+   N+R++M++K V K  G+SW+EL  ++H F A D 
Sbjct: 464 LEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDH 523

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           +HP  + +   +  L  + K +G++P    VL DV EE+KE  L  HSEKLALA+G++ T
Sbjct: 524 THPRREEVANKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIAT 583

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             GT IR+ KNLRIC DCHS+ K +SRL  R +I+RD+ RFH   GG+CSCGDYW
Sbjct: 584 PEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 638



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 118/219 (53%), Gaps = 6/219 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++VVSW +MI  + +     EAL  F EML S  EP+ FTFA+++  C         
Sbjct: 123 MPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETG 182

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H++ I++  E +  + ++L+DMY+K G+I  A  VF  +   DV    A+ISG A  
Sbjct: 183 RQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQM 242

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRS-RYSIQPQL 178
           GL  +A  +F ++++  +  +S+T+  +LTA S    +  G++   H +RS +YS    L
Sbjct: 243 GLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLL 302

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
               +++D+  + G++  A  +  SM  E   + W A+L
Sbjct: 303 ---NSLIDMYSKCGNVCYARRIFDSMP-ERTCISWNAML 337



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 94/190 (49%), Gaps = 5/190 (2%)

Query: 44  FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           + S++  C    A+     VH  +I+     +  L   LI +Y+KC  +  A+ +FD + 
Sbjct: 65  YDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMP 124

Query: 104 RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
           + +V  W AMIS  +  G A +A  +F +M   +  P+  TF  +LT+C      E GR+
Sbjct: 125 QRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQ 184

Query: 164 YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTF 223
               +  + + +  +    +++D+  ++G I +A+G+   +  E DVV   A++S    +
Sbjct: 185 -IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLP-ERDVVACTAIISG---Y 239

Query: 224 KRLELGEVAI 233
            ++ L E A+
Sbjct: 240 AQMGLDEEAL 249


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 167/416 (40%), Positives = 265/416 (63%), Gaps = 7/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE--PDKFTFASVIYGCARLGALN 58
           MPD+++VSW++MIG + +N R  +A++ F+EM++S  +  P+  T  SV++ CA + AL 
Sbjct: 416 MPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALG 475

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGV 117
               +H  I+ +  +L   +  AL+ MY KCG ++  + +F+ + +R +V  WN++ISG 
Sbjct: 476 QGKVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLISGY 535

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
            +HG   ++  +F +M    + P+ ITF+ +L ACSH GLVE+G+K F+ M   Y++ P+
Sbjct: 536 GMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSHVGLVEQGKKLFESM-VEYNVTPR 594

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IV 234
            EHY  MVDLLGRAG ++EA  LI SM ++P   VW +LL ACR    +E  E+A   + 
Sbjct: 595 AEHYACMVDLLGRAGRLDEAVELIQSMRIQPSPQVWGSLLGACRIHGHVEYAEMACSHLF 654

Query: 235 NISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294
           ++     G+YVLL+++Y   K  +  + ++E++++  + K  G SW+E+   ++ F + D
Sbjct: 655 DLEPRNAGNYVLLADIYARAKLQNQVDVLKELLEEHALEKVPGCSWIEVKKKLYSFVSVD 714

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
             +P+ + +  ++G  + + K+EG++P T  VL D+ EEEKE  L  HSEKLA+A+G++K
Sbjct: 715 NKNPQVEELQALIGEFVTQMKNEGYVPDTRSVLYDIEEEEKERILLGHSEKLAVAFGLIK 774

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T  G  IRI+KNLR+C DCHS  K IS+   R I+VRD  RFH F  G+CSC DYW
Sbjct: 775 TGSGEAIRITKNLRLCEDCHSVTKFISKFTDREIVVRDVNRFHHFRNGVCSCRDYW 830



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 114/274 (41%), Gaps = 49/274 (17%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGC-----ARLGA 56
           P K++  WN+M+         +EAL    +M    V  D +++A  +  C     + L A
Sbjct: 311 PVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGLKACIAASASHLPA 370

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
                 +H   I +   L+  ++  LID Y+K G +  A+ VF ++   ++  W+AMI  
Sbjct: 371 SARVREMHAHAIRRGYGLHTHVATTLIDCYAKLGIVSYAERVFTSMPDRNLVSWSAMIGC 430

Query: 117 VAIHGLAADASAIFTKMEM--FNVLPDSITFLGLLTACS--------------------- 153
            A +    DA  IF +M     +++P+SIT + +L AC+                     
Sbjct: 431 YAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALGQGKVLHAYILRRGFD 490

Query: 154 --------------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199
                          CG +E GR  F+ +  R ++      + +++   G  G   E+  
Sbjct: 491 LLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNVV----SWNSLISGYGMHGFGRESLQ 546

Query: 200 LITSMTME---PDVVVWRALLSACRTFKRLELGE 230
           +   M  E   P+++ + ++L AC     +E G+
Sbjct: 547 VFEEMIEEGISPNIITFVSVLGACSHVGLVEQGK 580



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 93/225 (41%), Gaps = 13/225 (5%)

Query: 32  MLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN-LIIEKKIELNFILSAALIDMYSKCG 90
           +L     P + T+ S++   AR      A  VH  L  +     +  LS  LI+ Y+   
Sbjct: 239 LLQGLPAPTQRTYESLLLAAARARDTALAAAVHRRLEADPVFRSDPFLSTRLIEAYAALS 298

Query: 91  KIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150
            +  A++VFD     ++ VWNAM+  +A+     +A      M    V  DS ++   L 
Sbjct: 299 ALPAARQVFDEAPVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGLK 358

Query: 151 AC-----SHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
           AC     SH       R+   H +R  Y +   +     ++D   + G +  A  + TSM
Sbjct: 359 ACIAASASHLPASARVREMHAHAIRRGYGLHTHVA--TTLIDCYAKLGIVSYAERVFTSM 416

Query: 205 TMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSN 249
             + ++V W A++     + + E    AI     +M  D  L+ N
Sbjct: 417 P-DRNLVSWSAMIG---CYAKNERPGDAIQIFQEMMASDADLVPN 457


>gi|242061934|ref|XP_002452256.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
 gi|241932087|gb|EES05232.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
          Length = 590

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 178/417 (42%), Positives = 256/417 (61%), Gaps = 8/417 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++ +VSW++MI   VR   F EALR F +M  +  +PD     SV+  CA LGAL   
Sbjct: 175 MPERGLVSWSAMIDACVRTGEFSEALRVFDQMTGNGFKPDAVVLVSVLKTCAHLGALERG 234

Query: 61  YWVHNLIIEKKI---ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
            WVH  +  +++     N +L  AL+DMY KCG +  A  VFD VQ +DV +WNAMI G+
Sbjct: 235 RWVHRFLKAERLGGRPGNVMLETALVDMYCKCGCMNEAWWVFDGVQSHDVVLWNAMIGGL 294

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           A++G    A  +F +M     +P+  TF+  L AC H G V+EG   F  MR  + I+P+
Sbjct: 295 AMNGHGKRALELFRRMLDKGFVPNESTFVVALCACIHTGRVDEGEDVFRSMRD-HGIEPR 353

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IV 234
            EHYG + DLLGRAG +EEA G++  M MEP    W AL+S+C     + +GE     ++
Sbjct: 354 REHYGCLADLLGRAGLLEEAEGVLLDMPMEPHASQWGALMSSCLMHNNVGVGERVGKKLI 413

Query: 235 NISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294
            +    GG YV L N+Y     W+ A+ +R++M+++G +K  G S++E  G++H+F++GD
Sbjct: 414 ELEPDDGGRYVALFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFIEWNGLVHEFRSGD 473

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGN-LYHHSEKLALAYGIL 353
             HP+ + I  +L  + QR +  G++  T  VL+D+  EE +GN L +HSE+LALA+GIL
Sbjct: 474 TRHPQTRLIYALLEDMEQRLQLIGYVKDTSQVLLDMDNEEDKGNTLSYHSERLALAFGIL 533

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
                  IRI KNLR+C DCH   K++S+L +R IIVRDR RFH F  G+CSC D+W
Sbjct: 534 NIPHDMPIRIVKNLRVCRDCHVHAKLVSKLYQREIIVRDRHRFHLFRDGVCSCNDFW 590



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 74/148 (50%), Gaps = 3/148 (2%)

Query: 74  LNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM 133
           L+ +    ++  Y KCG ++ A+EVF  +    +  W+AMI      G  ++A  +F +M
Sbjct: 147 LDVVSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQM 206

Query: 134 EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQP-QLEHYGAMVDLLGRA 191
                 PD++  + +L  C+H G +E GR     +++ R   +P  +    A+VD+  + 
Sbjct: 207 TGNGFKPDAVVLVSVLKTCAHLGALERGRWVHRFLKAERLGGRPGNVMLETALVDMYCKC 266

Query: 192 GHIEEAYGLITSMTMEPDVVVWRALLSA 219
           G + EA+ +   +    DVV+W A++  
Sbjct: 267 GCMNEAWWVFDGVQSH-DVVLWNAMIGG 293


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 166/406 (40%), Positives = 246/406 (60%), Gaps = 3/406 (0%)

Query: 8   SWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLI 67
           +W++M+ G+V+N R +EAL  FR ML   V  D+FT  SV   CA +G +     VH  +
Sbjct: 315 AWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCV 374

Query: 68  IEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADAS 127
            +   +L+  L++A++DMY+KCG ++ A+ +FD     +++VW +M+   A HG    A 
Sbjct: 375 EKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAI 434

Query: 128 AIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDL 187
            +F +M    + P+ IT +G+L+ACSH GLV EG  YF  M+  Y I P +EHY  +VDL
Sbjct: 435 ELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDL 494

Query: 188 LGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDY 244
            GR+G +++A   I    +  + +VW+ LLSACR  +  E  ++A   +V + +   G Y
Sbjct: 495 YGRSGLLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSY 554

Query: 245 VLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAID 304
           V+LSN+Y    +W     +R  M+++ VRK  G+SW+ L   +H F AGD SHP++  I 
Sbjct: 555 VMLSNIYATNNKWHDTFELRVSMQERKVRKQPGRSWIHLKNTVHTFVAGDASHPQSAEIY 614

Query: 305 KILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIRIS 364
             L  L++R K  G+   T+LV+ DV +E++E  L  HSEKLA+A+GI+ T  GT +RI 
Sbjct: 615 AYLEKLVERLKEIGYTSRTDLVVHDVEDEQRETALKFHSEKLAIAFGIISTPSGTPLRIF 674

Query: 365 KNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           KNLR+C DCH  IK IS    R I+VRD  RFH F+   CSC D+W
Sbjct: 675 KNLRVCEDCHEAIKYISLATGREIVVRDLYRFHHFKDASCSCEDFW 720



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 111/222 (50%), Gaps = 7/222 (3%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P +D  SWN++I G +R+    +AL   R M  + V  + +T+++       L   +   
Sbjct: 205 PLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGR 264

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD---TVQRNDVSVWNAMISGVA 118
            +H  ++   +E +  + ++L+DMY KCG ++ A  VFD    + R+    W+ M++G  
Sbjct: 265 QLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYV 324

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR-YSIQPQ 177
            +G   +A  +F +M    V  D  T   +  AC++ G+VE+GR+    +    Y +   
Sbjct: 325 QNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAP 384

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           L    A+VD+  + G++E+A  +      + ++ VW ++L +
Sbjct: 385 LA--SAIVDMYAKCGNLEDARSIFDRACTK-NIAVWTSMLCS 423



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 7/140 (5%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHA 60
           P +    W   I G  R  R+ + +R F EML+  +  P+ F  A+V+  CA +G +   
Sbjct: 72  PTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAGMGDVESG 131

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++   + L+ +L  A++DMY+KCG+ + A+ VF  +   D   WN  I      
Sbjct: 132 KRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAI------ 185

Query: 121 GLAADASAIFTKMEMFNVLP 140
           G    +  I   M++F+  P
Sbjct: 186 GACIQSGDILGSMQLFDESP 205



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 3/142 (2%)

Query: 80  AALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM-EMFNV 138
           A+++  + +  +   A+ VFD        VW   ISG A  G  AD    F +M      
Sbjct: 49  ASVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEA 108

Query: 139 LPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAY 198
            P++     ++  C+  G VE G++    M  R  +   +    A++D+  + G  E A 
Sbjct: 109 TPNAFVLAAVVRCCAGMGDVESGKRVHGWML-RNGVHLDVVLCNAVLDMYAKCGQFERAR 167

Query: 199 GLITSMTMEPDVVVWRALLSAC 220
            +  +M  E D V W   + AC
Sbjct: 168 RVFGAMA-ERDAVSWNIAIGAC 188


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 176/411 (42%), Positives = 251/411 (61%), Gaps = 4/411 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYW 62
           KDVVSWN++I G+ +N    EA+  +  M    ++ P++ T+ S++   + +GAL     
Sbjct: 158 KDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMR 217

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  +I+  +  +  +   LIDMY KCGK+  A  +F  V R +   WNAMIS   +HG 
Sbjct: 218 IHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGD 277

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
              A  +F +M+   V PD ITF+ LL+ACSH GLV + +  F+ M   Y I+P L+HYG
Sbjct: 278 GEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYG 337

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            MVDL GRAG +E A+  I  M ++PD   W ALL+ACR    +ELG+ A   +  +   
Sbjct: 338 CMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSE 397

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             G YVLLSN+Y  + +W+  ++VR + + +G+RK+ G S + L   +  F  G+++HP+
Sbjct: 398 NVGYYVLLSNIYANVGKWEGVDDVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPK 457

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
            + I + L  L  + K+ G++P    VL DV E+EKE  L  HSE+LA+AYGI+ TSP T
Sbjct: 458 CEEIYRELRDLTSKIKTIGYVPDFCFVLQDVEEDEKEHILMGHSERLAIAYGIISTSPKT 517

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI KNLR+C DCH+  K IS +  R IIVRD  RFH F+GG CSCGDYW
Sbjct: 518 PIRIFKNLRVCGDCHTVTKFISIITEREIIVRDSSRFHHFKGGTCSCGDYW 568



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 122/219 (55%), Gaps = 4/219 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D  SWN+MI G+ +N    EAL    EM    V+ D  T ASV+  CA++G +   
Sbjct: 55  MPARDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSG 114

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +I+  +E    +S ALI+MY+K G +  A++VF  + + DV  WN +I+G A +
Sbjct: 115 KLIHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLIK-DVVSWNTLITGYAQN 173

Query: 121 GLAADASAIFTKMEMF-NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           GLA++A  ++  ME    ++P+  T++ +L A SH G +++G +    +  +  +   + 
Sbjct: 174 GLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQV-IKNCLYSDVF 232

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
               ++D+ G+ G +++A  L   +  + + V W A++S
Sbjct: 233 VGTCLIDMYGKCGKLDDAISLFYQVPRK-NSVPWNAMIS 270



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P K+ V WN+MI  +  +   ++AL  FREM + +V+PD  TF S++  C+  G ++ A
Sbjct: 257 VPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDA 316

Query: 61  YWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
            W  N++ E+  I+ +      ++D++ + G+++MA      +  + D S W A+++   
Sbjct: 317 QWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACR 376

Query: 119 IHG 121
           IHG
Sbjct: 377 IHG 379



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 85/160 (53%), Gaps = 9/160 (5%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H L+++   E +  ++A+L+ MYS+ G +  A+++FD +   D   WNAMISG   +G 
Sbjct: 16  IHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQNGN 75

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           AA+A  I  +M +  V  D+IT   +L  C+  G +  G K       ++ ++ +L    
Sbjct: 76  AAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSG-KLIHLYVIKHGLEFELFVSN 134

Query: 183 AMVDL---LGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A++++    G  GH ++ +GL+       DVV W  L++ 
Sbjct: 135 ALINMYAKFGSLGHAQKVFGLLIK-----DVVSWNTLITG 169


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 172/415 (41%), Positives = 252/415 (60%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P++DVVS  ++I G+ +    +EAL  F  +    +  +  T+AS++   + L AL+H 
Sbjct: 172 LPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHG 231

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ ++  ++    +L  +LIDMYSKCG +  A+++F+ +    V  WNAM+ G + H
Sbjct: 232 KQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKH 291

Query: 121 GLAADASAIFTKMEMFN-VLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQL 178
           G   +   +F  M   N V PDS+TFL +L+ CSH GL ++G + FD M      I+  +
Sbjct: 292 GKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGI 351

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVN 235
           EHYG ++DLLGRAG +EEA+ LI  M  EP   +W +LL ACR      +GE     ++ 
Sbjct: 352 EHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLE 411

Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           I     G+YV+LSN+Y    RW+   NVRE+M +K V K  G+SW+EL   IH F A DR
Sbjct: 412 IEPENAGNYVILSNLYASAGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDR 471

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SHP  + +   +  L+ + K  G++P    VL DV EE+KE  L  HSEKLALA+G++ T
Sbjct: 472 SHPRREEVFLKVRELLVKFKESGYVPDQSCVLYDVDEEQKEKILLGHSEKLALAFGLIST 531

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           S G  +R+ KNLRIC DCH++ K +S++  R + +RD+ RFH   GG+CSCGDYW
Sbjct: 532 SEGVPLRVIKNLRICVDCHNFAKFVSKVYGRQVSIRDKNRFHHVAGGICSCGDYW 586



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 119/218 (54%), Gaps = 4/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++VVSW +MI G+ +     EAL  F +ML S  EP++FTFA+V+  C         
Sbjct: 71  MRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELG 130

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ I ++  E +  + ++L+DMY+K G+I  A+ VF+ +   DV    A+ISG A  
Sbjct: 131 RQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 190

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
           GL  +A  +F +++   +  + +T+  LLTA S    ++ G++   H +R        L+
Sbjct: 191 GLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQ 250

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           +  +++D+  + G++  A  +  +M +   V+ W A+L
Sbjct: 251 N--SLIDMYSKCGNLNYARKIFNNMPVRT-VISWNAML 285



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 102/204 (50%), Gaps = 9/204 (4%)

Query: 51  CARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVW 110
           C    A+     VH  +I+        LS  LI +Y+KC  +  A+ VFD ++  +V  W
Sbjct: 20  CVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSW 79

Query: 111 NAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS 170
            AMISG +  G A++A  +F +M   +  P+  TF  +L++C+     E GR+   H+  
Sbjct: 80  TAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFK 139

Query: 171 RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE 230
           R + +  +    +++D+  +AG I EA G+   +  E DVV   A++S    + +L L E
Sbjct: 140 R-NYENHIFVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISG---YAQLGLDE 194

Query: 231 VAIVNISRL----MGGDYVLLSNM 250
            A+    RL    M  +YV  +++
Sbjct: 195 EALELFCRLQREGMSSNYVTYASL 218


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  345 bits (884), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 171/410 (41%), Positives = 250/410 (60%), Gaps = 4/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K+ VSWN++I GF R    +  L  F EM  +  E   FT++SV    A +GAL    WV
Sbjct: 229 KNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWV 288

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I+    L+  +   ++DMY+K G +  A++VFD V + DV  WN+M++  A +GL 
Sbjct: 289 HAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLG 348

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A   F +M    V  + ITFL +LTACSH GLV+EG++YFD M+  Y+++P+++HY  
Sbjct: 349 REAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMK-EYNLEPEIDHYVT 407

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD 243
           +VDLLGRAG + +A   I  M M+P   VW ALL +CR  K  ++G+ A  ++  L   D
Sbjct: 408 VVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDD 467

Query: 244 Y---VLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
               VLL N+Y    +WD A  VR++MK  GV+K    SW+E+   +H F A D +HP +
Sbjct: 468 TGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRS 527

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + I K    +  + +  G++P T+ VL+ V E+E++  L +HSEK+ALA+ ++    G  
Sbjct: 528 EEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGAT 587

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IRI KN+RIC DCHS  + IS++ +R I+VRD  RFH F  G CSCGDYW
Sbjct: 588 IRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDYW 637



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 123/240 (51%), Gaps = 7/240 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+ SW S+I G+ +N   DEAL     ML  + +P+ FTFAS++       +    
Sbjct: 125 MPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIG 184

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L ++     +  + +AL+DMY++CG++ MA  VFD ++  +   WNA+I+G A  
Sbjct: 185 EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARK 244

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLE 179
           G       +F +M+         T+  + +A +  G +E+G+    HM +S   +   + 
Sbjct: 245 GDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVG 304

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           +   ++D+  ++G + +A  +   +  + DVV W ++L+A   F +  LG  A+ +   +
Sbjct: 305 N--TILDMYAKSGSMIDARKVFDRVD-KKDVVTWNSMLTA---FAQYGLGREAVTHFEEM 358



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 5/196 (2%)

Query: 44  FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           + S+I  CAR  +L+ A  +H  +   +   +  L  +LI +Y KCG +  A+ VFD + 
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 104 RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
             D+  W ++I+G A + +  +A  +   M      P+  TF  LL A         G +
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 164 YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTF 223
               +  +Y     +    A++D+  R G ++ A  +   +  + + V W AL++    F
Sbjct: 187 -IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESK-NGVSWNALIAG---F 241

Query: 224 KRLELGEVAIVNISRL 239
            R   GE  ++  + +
Sbjct: 242 ARKGDGETTLLMFAEM 257


>gi|224074129|ref|XP_002304264.1| predicted protein [Populus trichocarpa]
 gi|222841696|gb|EEE79243.1| predicted protein [Populus trichocarpa]
          Length = 499

 Score =  345 bits (884), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 174/415 (41%), Positives = 251/415 (60%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKV--EPDKFTFASVIYGCARLGALN 58
           M  +D ++WN +I  ++RN R  + L  F  MLS ++  EPD  T   ++  CA LGAL 
Sbjct: 85  MRQRDTIAWNVLISCYMRNRRTRDVLVIFDGMLSGELGCEPDDVTCLLLLQACANLGALE 144

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               VH  I+E+  +    L  +LI MYS+ G +  A  VF  +   +V  W+A+ISG+A
Sbjct: 145 FGEKVHGHIVERGYDNATNLCNSLIAMYSQFGNLDKAFGVFKGMHNKNVVTWSAIISGLA 204

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           ++G   +A   F +M    VLPD +TF G+L+ACS+CGLV++G   F  M   + I P +
Sbjct: 205 MNGYGREAIGAFEEMLKMGVLPDDLTFTGVLSACSNCGLVDKGMIIFARMSKEFGIVPNI 264

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
            HYG MVDLLGRAG + +AY LI SM ++PD  +WR LL ACR  + + LGE  + ++  
Sbjct: 265 HHYGCMVDLLGRAGQLHQAYQLIMSMRVKPDSTIWRTLLGACRIHRNVILGEHVVEHLIE 324

Query: 239 LM---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L     GDYVLL N+Y  +  W     +R+ MK+KG++ +   S +EL G +H+F   D 
Sbjct: 325 LKAQEAGDYVLLFNLYSSVDNWKKVTELRKFMKEKGIQTTPASSSIELKGKVHEFVVDDV 384

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SHP+   I ++L  + ++ K  G++      L ++  EEK   L +HSEKLA+A+G+L T
Sbjct: 385 SHPQKDEIYEMLDEISKQLKIAGYVAEITSELPNLDAEEKRYVLSYHSEKLAIAFGVLAT 444

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            PGT IRI+KNLRIC DCH++ K++S +  R +I+ D  RFH F GG CSC DYW
Sbjct: 445 PPGTTIRIAKNLRICVDCHNFAKILSGVYNRQVIITDHTRFHHFRGGHCSCNDYW 499



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 6/199 (3%)

Query: 24  EALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALI 83
           E    ++EM    +  D  + + VI    R+ +L     VH  I+    + + +L   L+
Sbjct: 7   EGFFMYQEMRKKGLRADPVSLSFVIRCYIRICSLIGGEQVHARILSDGHQSDSLLLTNLM 66

Query: 84  DMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM--EMFNVLPD 141
           D+YS C K   A +VFD +++ D   WN +IS    +    D   IF  M        PD
Sbjct: 67  DLYSLCDKGSEACKVFDEMRQRDTIAWNVLISCYMRNRRTRDVLVIFDGMLSGELGCEPD 126

Query: 142 SITFLGLLTACSHCGLVEEGRKYFDHMRSR-YSIQPQLEHYGAMVDLLGRAGHIEEAYGL 200
            +T L LL AC++ G +E G K   H+  R Y     L    +++ +  + G++++A+G+
Sbjct: 127 DVTCLLLLQACANLGALEFGEKVHGHIVERGYDNATNL--CNSLIAMYSQFGNLDKAFGV 184

Query: 201 ITSMTMEPDVVVWRALLSA 219
              M    +VV W A++S 
Sbjct: 185 FKGMH-NKNVVTWSAIISG 202


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  344 bits (883), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 175/413 (42%), Positives = 250/413 (60%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++VVSW+ MI G+ +    +EA+R F+E L   ++ + FT +SVI  C     L   
Sbjct: 216 MPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELG 275

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L  +   +L+  + ++LI +YSKCG I+ A  VFD V   ++ +WNAM+   A H
Sbjct: 276 KQIHGLCFKTSYDLSGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQH 335

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A  +FTKME   + P+ ITFL +L ACSH GLVEEG+KYF  M+ +Y I+P  +H
Sbjct: 336 AHTKEAFDLFTKMENAGMRPNFITFLCVLYACSHAGLVEEGKKYFALMK-KYEIEPGTQH 394

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y +MVDLLGRAG ++EA  +I  M  EP   VW A ++ CR     +L   A   +  + 
Sbjct: 395 YASMVDLLGRAGKLQEALSVIKGMPTEPTESVWGAFITGCRIHGNTDLAAFAADKVFELG 454

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
            +  G +V+LSN Y    R++ A   R++++ +GV+K  G SW+E    +H+F AGDR H
Sbjct: 455 AVSSGLHVMLSNAYAAAGRYEDAAKARKMLRDRGVKKETGLSWIEEGNRVHKFAAGDRFH 514

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
              + I + L  L +  +  G++  T  VL +V  EEK   + +HSE+LA+A+G++    
Sbjct: 515 VRMKEIYQKLEDLGEEMERAGYVADTSFVLREVGSEEKNQTIRYHSERLAIAFGLISIPL 574

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KNLR+C DCH+ IK IS+L  RVIIVRD  RFHRFE G CSC DYW
Sbjct: 575 GRPIRIMKNLRVCGDCHNAIKFISKLSGRVIIVRDNNRFHRFEDGKCSCADYW 627



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 118/265 (44%), Gaps = 43/265 (16%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K   +W+S+I  F +N     A+++F  M+   + PD   F S    CA LG  +    V
Sbjct: 118 KSSTTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSV 177

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H L+I+   +++  + ++L+DMY+KCG I+ A+ VFD +   +V  W+ MI G    G  
Sbjct: 178 HCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEH 237

Query: 124 ADASAIF-------------------------TKMEM--------FNVLPDSITFLG--L 148
            +A  +F                         T +E+        F    D   F+G  L
Sbjct: 238 EEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSL 297

Query: 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT--- 205
           ++  S CGL+E   + FD +  +      L  + AM+    +  H +EA+ L T M    
Sbjct: 298 ISLYSKCGLIEGAYRVFDEVPIK-----NLGMWNAMLIACAQHAHTKEAFDLFTKMENAG 352

Query: 206 MEPDVVVWRALLSACRTFKRLELGE 230
           M P+ + +  +L AC     +E G+
Sbjct: 353 MRPNFITFLCVLYACSHAGLVEEGK 377



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 91/200 (45%), Gaps = 19/200 (9%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  II+  +++  ++   LI+ YSK     ++ +VF+  +R   + W+++IS  A +  
Sbjct: 76  IHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWSSVISSFAQNEE 135

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLEHY 181
              A   F +M   N+ PD   F     AC+  G  + G+  +   +++ Y +   +   
Sbjct: 136 PVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTGYDVDVFVG-- 193

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL----------SACRTFKR-----L 226
            ++VD+  + G I+EA  +   M    +VV W  ++           A R FK      L
Sbjct: 194 SSLVDMYAKCGDIKEARNVFDEMPHR-NVVSWSGMIYGYTQLGEHEEAMRLFKEALLEGL 252

Query: 227 ELGEVAIVNISRLMGGDYVL 246
           ++ +  + ++ R+ G   +L
Sbjct: 253 DVNDFTLSSVIRVCGSATLL 272


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  344 bits (883), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 173/409 (42%), Positives = 245/409 (59%), Gaps = 4/409 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP  DVVSW ++I    +  + +EA+  FR ML  +  P+      ++     LGA    
Sbjct: 510 MPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNLGAPQLG 569

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H + I+  ++   +++ AL+ MY KC      K VFD+++  D+  WN +I+G A H
Sbjct: 570 QQIHTIAIKLGMDSGLVVANALVSMYFKCSSADSLK-VFDSMEERDIFTWNTIITGYAQH 628

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  ++  M    VLP+ +TF+GLL ACSH GLV+EG ++F  M S Y + P LEH
Sbjct: 629 GLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEH 688

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  MVDLLGRAG ++ A   I  M +EPD V+W ALL AC+  K +E+G  A   + +I 
Sbjct: 689 YACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSIE 748

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G+YV+LSN+Y     WD    VR++MK++GV K  G SW+++   +H F  GD  H
Sbjct: 749 PSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWMQIKNKMHSFVTGDEEH 808

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            + Q I   L  L    K+ G++P T+ VL D+ EE+KE +L +HSEKLA+AYG+L T  
Sbjct: 809 EQIQNIYATLWELYTLLKATGYVPDTDFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPK 868

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSC 406
           G  I+I KNLRIC DCH++IK +S + +R I VRD  RFH F  G CSC
Sbjct: 869 GMPIQIMKNLRICGDCHTFIKFVSSVTKREIDVRDGNRFHHFRNGSCSC 917



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 107/224 (47%), Gaps = 14/224 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++ +SW  MI G+ RN R ++AL   + +    + P   +  S  + C+ + AL   
Sbjct: 378 MPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETG 437

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+L ++   + N  +  ALI +Y K   I   +++FD +   D   +N+ +S +  +
Sbjct: 438 KQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQN 497

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            L  +A  +F  M      PD +++  +++AC+      E  + F  M      + +L +
Sbjct: 498 NLFDEARDVFNNMPS----PDVVSWTTIISACAQADQGNEAVEIFRSMLH----ERELPN 549

Query: 181 YGAMVDLLGRAGHI------EEAYGLITSMTMEPDVVVWRALLS 218
              +  LLG +G++      ++ + +   + M+  +VV  AL+S
Sbjct: 550 PPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVS 593



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 20/224 (8%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+++WNSMI  +  N   D      R +  +    +  T   ++ G AR G +  A
Sbjct: 59  MPFRDIIAWNSMIFAYCNNGMPDAG----RSLADAISGGNLRTGTILLSGYARAGRVRDA 114

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V + +  +    N +   A++  Y + G I +A+++FD +   DVS WN M++G    
Sbjct: 115 RRVFDGMGVR----NTVAWNAMVTCYVQNGDITLARKLFDAMPSRDVSSWNTMLTGYCHS 170

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY-----SIQ 175
            L  +A  +F +M   N +  ++   G +       L+E+  + +D  R+         Q
Sbjct: 171 QLMEEARNLFERMPERNGVSWTVMISGYV-------LIEQHGRAWDMFRTMLCEGMTPEQ 223

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           P L    + V  LG+ G +E  + L+     E DVVV  A+L+ 
Sbjct: 224 PNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNG 267



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 111/240 (46%), Gaps = 14/240 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++ VSW  MI G+V   +   A   FR ML   + P++    SV+     LG     
Sbjct: 183 MPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGIL 242

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSK-CGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             +H L+ +   E + ++  A+++ Y+K    +  A + F+ +   +   W+ +I+ ++ 
Sbjct: 243 ESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQ 302

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            G   DA A++ +  + +V P   +   +LT  +  G +++ +  FD +      +P + 
Sbjct: 303 AGRIDDAFAVYQRDPLKSV-PSRTS---MLTGLARYGRIDDAKILFDQIH-----EPNVV 353

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
            + AM+    +   ++EA  L   M    + + W  +++    + R    E A+V++  L
Sbjct: 354 SWNAMITGYMQNEMVDEAEDLFNRMPFR-NTISWAGMIAG---YARNGRSEQALVSLQAL 409



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 91/214 (42%), Gaps = 10/214 (4%)

Query: 80  AALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVL 139
           +A I    + G++  A+EVFD++   D+  WN+MI     +G+     ++   +   N+ 
Sbjct: 37  SARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLR 96

Query: 140 PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199
             +I    LL+  +  G V + R+ FD M  R ++      + AMV    + G I  A  
Sbjct: 97  TGTI----LLSGYARAGRVRDARRVFDGMGVRNTVA-----WNAMVTCYVQNGDITLARK 147

Query: 200 LITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDT 259
           L  +M    DV  W  +L+     + +E        +    G  + ++ + Y  +++   
Sbjct: 148 LFDAMPSR-DVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGR 206

Query: 260 AENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
           A ++   M  +G+   Q      L+ V H  K G
Sbjct: 207 AWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPG 240



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 103/256 (40%), Gaps = 51/256 (19%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFF-REMLSSKVEPDKFTFASVIYGCARLGALNH 59
           M  ++  +W+++I    +  R D+A   + R+ L S   P +    S++ G AR G ++ 
Sbjct: 285 MAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSV--PSR---TSMLTGLARYGRIDD 339

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
           A     ++ ++  E N +   A+I  Y +   +  A+++F+ +   +   W  MI+G A 
Sbjct: 340 A----KILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYAR 395

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG------------------ 161
           +G +  A      +    +LP   +      ACS+   +E G                  
Sbjct: 396 NGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYV 455

Query: 162 -----------------RKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
                            R+ FD M  + ++      Y + +  L +    +EA  +  +M
Sbjct: 456 CNALITLYGKYRSIGSVRQIFDRMTVKDTVS-----YNSFMSALVQNNLFDEARDVFNNM 510

Query: 205 TMEPDVVVWRALLSAC 220
              PDVV W  ++SAC
Sbjct: 511 P-SPDVVSWTTIISAC 525


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  344 bits (883), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 174/413 (42%), Positives = 256/413 (61%), Gaps = 21/413 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+KD+VSWN+M+  +V++  F+E+   F +M SS V+PDK T  S++  CA++GALNH 
Sbjct: 460 IPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHG 519

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WV+  I + +I ++ +L  ALIDMY KCG ++MA E+F  +   +V VW AM++  A+ 
Sbjct: 520 IWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAME 579

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +A  ++ +ME   V PD +TF+ LL ACSH GLV+EG KYF+ +RS Y+I P + H
Sbjct: 580 GQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHH 639

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDLLGR GH+EE    I  M +EPDV +W +L+ ACR+   +EL E A   ++ I 
Sbjct: 640 YGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEID 699

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G +VLLSN+Y    RWD    VR  + + GV K  G + +E  GV+H+F A   S+
Sbjct: 700 PTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQNGVVHEFVA---SN 756

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
             +  I  +L  + +R           LV  ++S+   +     HSE+LA+A+G++    
Sbjct: 757 LVSADILCMLQDIERRL----------LVKQELSDTTSQ-----HSERLAVAFGLINNQE 801

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            + IR+  ++R+C DCHS +K+IS+   R I++RD  RFHRF  G CSC DYW
Sbjct: 802 NSPIRVVNSVRMCRDCHSVMKLISQAYDREIVIRDNYRFHRFTDGHCSCKDYW 854



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 121/253 (47%), Gaps = 39/253 (15%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++ +VSW +M+ G+V+   + E+L  F++M    V PD+    +V+  C  L   +  
Sbjct: 328 MNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLG 387

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGK----------------------------- 91
             VH  I+   + ++  L  AL+D+Y+KCGK                             
Sbjct: 388 RSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRS 447

Query: 92  --IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
             +  A++ F+ +   D+  WN M++    H L  ++  IF KM+  NV PD  T + LL
Sbjct: 448 GGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLL 507

Query: 150 TACSHCGLVEEG---RKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM 206
           ++C+  G +  G     Y +  ++   I   L    A++D+ G+ G +E AY + T + +
Sbjct: 508 SSCAKVGALNHGIWVNVYIE--KNEIGIDAMLG--TALIDMYGKCGCVEMAYEIFTQI-I 562

Query: 207 EPDVVVWRALLSA 219
           E +V VW A+++A
Sbjct: 563 EKNVFVWTAMMAA 575



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 121/287 (42%), Gaps = 74/287 (25%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DV+SWN+MI  +V    + EAL  F EML S V PD+ T  S++  CA+L  L   
Sbjct: 194 MTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMG 253

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCG------------------------------ 90
             +H  I++ K+ +   L   L+DMYSKCG                              
Sbjct: 254 KRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYV 313

Query: 91  ---KIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLG 147
              KI  A+++FD +    +  W  M+SG    G   ++  +F +M   NV+PD +  + 
Sbjct: 314 KSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVT 373

Query: 148 LLTACSH-----------------------------------CGLVEEGRKYFDHMRSRY 172
           +L+AC H                                   CG ++E  + F+ +  + 
Sbjct: 374 VLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKS 433

Query: 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +       + +M+D   R+G +++A      +  E D+V W  +++A
Sbjct: 434 AAS-----WNSMLDGFCRSGGVDKARDFFNKIP-EKDIVSWNTMVNA 474



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 129/253 (50%), Gaps = 18/253 (7%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + + + WN+++   ++     E L  +  M++  V  D  TF  +I+ C +   +     
Sbjct: 95  EPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSE 154

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  I++     N  L+  L+ +YSKCGK++   ++F+ +   DV  WN MIS   + G+
Sbjct: 155 VHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGM 214

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F +M +  VLPD IT + L++ C+    +E G++   H+   Y +  +L   G
Sbjct: 215 YREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRL--HL---YIVDNKLWIRG 269

Query: 183 A----MVDLLGRAGHIEEAYGLITSMT-MEPDVVVWRALLSACRTFKRLE--------LG 229
           +    +VD+  + G ++EA+GL++     E DVV+W  L+S      +++        + 
Sbjct: 270 SLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMN 329

Query: 230 EVAIVNISRLMGG 242
           E ++V+ + +M G
Sbjct: 330 ERSLVSWTTMMSG 342


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  344 bits (883), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 169/413 (40%), Positives = 247/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP K+ +SW  M+ G+V     ++AL+ F  M +  V+P  +T+A  I  C  LG+L H 
Sbjct: 390 MPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHG 449

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++   E +     ALI MY++CG ++ A  +F  +   D   WNAMIS +  H
Sbjct: 450 KQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQH 509

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M    + PD I+FL +LTAC+H GLV+EG +YF+ M+  + I P  +H
Sbjct: 510 GHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDH 569

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  ++DLLGRAG I EA  LI +M  EP   +W A+LS CRT   +ELG  A   + ++ 
Sbjct: 570 YTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMT 629

Query: 241 G---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y+LLSN Y    RW  A  VR++M+ +GV+K  G SW+E    +H F  GD  H
Sbjct: 630 PQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGDTKH 689

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PEA  + K L  +  R +  G++P T++VL D+   +KE  L+ HSE+LA+ +G+LK  P
Sbjct: 690 PEAHKVYKFLEMVGARMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLKLPP 749

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  + + KNLRIC DCH+ +  +S+ + R I+VRD  RFH F+ G CSCG+YW
Sbjct: 750 GATVTVLKNLRICDDCHAVMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 124/286 (43%), Gaps = 73/286 (25%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           DVV WN+MI G+V +    EA   FR M+  +V  D+FTF SV+  CA  G   H   VH
Sbjct: 259 DVV-WNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVH 317

Query: 65  NLIIEKKIELNFILSA------ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA------ 112
             I   +++ NF+  A      AL+ +YSKCG I +A+ +FD ++  DV  WN       
Sbjct: 318 GQIT--RLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYV 375

Query: 113 -------------------------MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLG 147
                                    M+SG    G + DA  +F +M   +V P   T+ G
Sbjct: 376 ESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAG 435

Query: 148 LLTACSHCGLVEEGRKYFDH------------------MRSR----------YSIQPQLE 179
            ++AC   G ++ G++   H                  M +R          + + P ++
Sbjct: 436 AISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNID 495

Query: 180 --HYGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSAC 220
              + AM+  LG+ GH  EA  L   M  E   PD + +  +L+AC
Sbjct: 496 SVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTAC 541



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 108/255 (42%), Gaps = 41/255 (16%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLG--ALNHA 60
           +D V  N++I  + R +    A+  FR +L+S  + PD ++F +++     L   ++ H 
Sbjct: 119 RDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHC 178

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKC------------------------------- 89
             +   +++        +S AL+ +Y KC                               
Sbjct: 179 AQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGY 238

Query: 90  ---GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFL 146
              G +  A+ VF+ V      VWNAMISG    G+  +A  +F +M +  V  D  TF 
Sbjct: 239 VRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFT 298

Query: 147 GLLTACSHCGLVEEGRKY---FDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
            +L+AC++ G    G+        ++  +  +  L    A+V L  + G+I  A  +  +
Sbjct: 299 SVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDN 358

Query: 204 MTMEPDVVVWRALLS 218
           M  + DVV W  +LS
Sbjct: 359 MKSK-DVVSWNTILS 372



 Score = 42.7 bits (99), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 77  ILSAALIDMYSKCGKIQMAKEVFDTVQ--RNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           + + +L+  Y+  G++  A   FD V   R D  + NA+IS  A    AA A A+F  + 
Sbjct: 89  VAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLL 148

Query: 135 MFNVL-PDSITFLGLLTACSH 154
               L PD  +F  LL+A  H
Sbjct: 149 ASGSLRPDDYSFTALLSAAGH 169


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  344 bits (883), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 178/412 (43%), Positives = 248/412 (60%), Gaps = 3/412 (0%)

Query: 2    PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
            P   +VSW SM+ G+V N ++++ L+ FR M+   V  D  T  ++I  CA  G L    
Sbjct: 600  PKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGR 659

Query: 62   WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
             VH  + +    ++  + ++LIDMYSK G +  A  VF      ++ +W +MISG A+HG
Sbjct: 660  HVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHG 719

Query: 122  LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
                A  +F +M    ++P+ +TFLG+L ACSH GL+EEG +YF  M+  Y I P +EH 
Sbjct: 720  QGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFRMMKDAYCINPGVEHC 779

Query: 182  GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISR 238
             +MVDL GRAGH+ +    I    +     VW++ LS+CR  K +E+G+     ++ ++ 
Sbjct: 780  TSMVDLYGRAGHLTKTKNFIFKNGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAP 839

Query: 239  LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
               G YVLLSNM     RWD A  VR +M ++GV+K  G+SW++L   IH F  GDRSHP
Sbjct: 840  SDPGAYVLLSNMCASNHRWDEAARVRSLMHQRGVKKQPGQSWIQLKDQIHTFVMGDRSHP 899

Query: 299  EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
            +   I   L  LI R K  G+    +LV+ DV EE+ E  + HHSEKLA+ +GI+ T+  
Sbjct: 900  QDDEIYSYLDILIGRLKEIGYSFDVKLVMQDVEEEQGEVLISHHSEKLAVVFGIINTANR 959

Query: 359  TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T IRI KNLRIC DCH++IK  S+LL R IIVRD  RFH F+ G CSCGDYW
Sbjct: 960  TPIRIIKNLRICTDCHNFIKYASQLLDREIIVRDIHRFHHFKHGSCSCGDYW 1011



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 119/237 (50%), Gaps = 22/237 (9%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KDVVSWN+++ G ++      AL     M+    E    TF+  +   + L  +   
Sbjct: 482 LPYKDVVSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVELG 541

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEV-----FDTVQRNDVSV------ 109
             +H ++++   + +  + ++L++MY KCG++  A  +      D +++ +  V      
Sbjct: 542 RQLHGMVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPK 601

Query: 110 -----WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKY 164
                W +M+SG   +G   D    F  M    V+ D  T   +++AC++ G++E GR  
Sbjct: 602 AGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHV 661

Query: 165 FDHMRSRYSIQPQLEHY--GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +++    I  +++ Y   +++D+  ++G +++A+ ++   + EP++V+W +++S 
Sbjct: 662 HAYVQ---KIGHRIDAYVGSSLIDMYSKSGSLDDAW-MVFRQSNEPNIVMWTSMISG 714



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 77/158 (48%), Gaps = 8/158 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P ++  +W  +I GF R    +     FREM +    P+++T +SV+  C+    L   
Sbjct: 350 IPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQLG 409

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++   I+++ +L  +++D+Y KC   + A+ +F+ +   DV  WN MI      
Sbjct: 410 KGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIMI------ 463

Query: 121 GLAADASAIFTKMEMFNVLP--DSITFLGLLTACSHCG 156
           G    A  +   ++MF  LP  D +++  ++     CG
Sbjct: 464 GAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCG 501



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 8/166 (4%)

Query: 54  LGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAM 113
           LG L HA +V N  ++     N +L+     +Y+K   +  A+++FD + + +   W  +
Sbjct: 308 LGTL-HALYVKNGSLQTLNPANHLLT-----LYAKSNNMAHAQKLFDEIPQRNTQTWTIL 361

Query: 114 ISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
           ISG A  G +     +F +M+     P+  T   +L  CS    ++ G+     M  R  
Sbjct: 362 ISGFARAGSSEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWML-RNG 420

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           I   +    +++DL  +    E A  L   M  E DVV W  ++ A
Sbjct: 421 IDVDVVLGNSILDLYLKCKVFEYAERLFELMN-EGDVVSWNIMIGA 465


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  344 bits (883), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 175/424 (41%), Positives = 266/424 (62%), Gaps = 15/424 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLGALNH 59
           MP+++ V+W  MI G++ +    E+    REM+   ++E +  T  S++  C++ G L  
Sbjct: 210 MPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMM 269

Query: 60  AYWVHNLIIE-KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
             WVH   ++ K+ ELN ++  A++DMY+KCG+I +A + F  + + +V  WNAM+SG+A
Sbjct: 270 GRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLA 329

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HGL   A  IF +M      PD +TF  +L+ACSH GLV++G  YF ++ S Y I P++
Sbjct: 330 MHGLGRAALDIFPQM-FKEAKPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYGITPKV 388

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           EHY  MVDLLGRAG +EEA  L+  M + P+ VV  +LL +C    +L+LGE  +  + +
Sbjct: 389 EHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSIHGKLQLGEHLLQELVQ 448

Query: 239 LMGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L   +   ++LLSNMY    + + A ++R+++KK+G++K  G S + + G +HQF AGD+
Sbjct: 449 LDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSIHVGGQVHQFSAGDK 508

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATEL-------VLMD--VSEEEKEGNLYHHSEKL 346
           SHP  + +  +L  +I R +  G+ P T L        L D  V +EEKE  L+ HSEKL
Sbjct: 509 SHPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDDLVEQEEKEQALFSHSEKL 568

Query: 347 ALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSC 406
           A+ +G++ T PG  + I KNLRIC DCHS IK++S++  R I++RDR RFH F+ G CSC
Sbjct: 569 AICFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKIYNREIVIRDRNRFHCFKEGSCSC 628

Query: 407 GDYW 410
            DYW
Sbjct: 629 CDYW 632



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 112/251 (44%), Gaps = 39/251 (15%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD V W +++G FVR+   DEAL  F EM    V+PD+ T   +  GCARLG +      
Sbjct: 81  KDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVGAQG 140

Query: 64  HNLIIEKKIELNFILSA--ALIDMYSKCGKIQMAKEVF---------------------- 99
           H  ++  K+ L  +  A  A++DMY+K G +  A+ VF                      
Sbjct: 141 HGCMV--KMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIRSE 198

Query: 100 ----------DTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEM-FNVLPDSITFLGL 148
                     +  +RN+V+ W  MI+G    GL  ++ A+  +M     +  + +T   +
Sbjct: 199 GVRNGRVVFDEMPERNEVA-WTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSI 257

Query: 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
           LTACS  G +  GR    +       +  +    AMVD+  + G I  A+     M  + 
Sbjct: 258 LTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMP-QR 316

Query: 209 DVVVWRALLSA 219
           +VV W A+LS 
Sbjct: 317 NVVSWNAMLSG 327



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 6/177 (3%)

Query: 47  VIYGCARLGALNHAYWVHNLIIEKKIE--LNFILSAALIDMYSKCGKIQMAKEVFDTVQR 104
           ++  CAR  +L+    +H  II   I       L  AL+  Y+ CG    A++VFD +  
Sbjct: 19  LLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDEIPH 78

Query: 105 N--DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR 162
           +  D   W  ++     H ++ +A  IF +M    V PD +T + L   C+  G V  G 
Sbjct: 79  SHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVGA 138

Query: 163 KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +    M  +  +    +   A++D+  ++G + EA  +   M  +  VV W  +L  
Sbjct: 139 QGHGCM-VKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQ-SVVSWTVILDG 193


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  344 bits (883), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 171/414 (41%), Positives = 250/414 (60%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +K+++SW  MI G   N   +E L+ F  M     EP  + F+  I  CA LGA  + 
Sbjct: 377 MKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNG 436

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H  +++   + +     ALI MY+KCG ++ A++VF T+   D   WNA+I+ +  H
Sbjct: 437 QQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQH 496

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  ++ +M    + PD ITFL +LTACSH GLV++GRKYF+ M + Y I P  +H
Sbjct: 497 GHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADH 556

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  ++DLL R+G   EA  +I S+  +P   +W ALLS CR    +ELG +A   +  L+
Sbjct: 557 YARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLI 616

Query: 241 ---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y+LLSNMY    +W+    VR++M+ +GV+K    SW+E+   +H F   D SH
Sbjct: 617 PEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSH 676

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDV-SEEEKEGNLYHHSEKLALAYGILKTS 356
           PEA+A+ K L  L +  +  G++P T  VL DV S+  KE  L  HSEK+A+A+G++K  
Sbjct: 677 PEAEAVYKYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLP 736

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PGT IRI KNLR C DCH++ + +S++++R II+RDR RFH F  G CSCG++W
Sbjct: 737 PGTTIRIFKNLRTCGDCHNFFRFLSKVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 42/249 (16%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           +V++N+MI G+V    + EAL   R M+SS +E D+FT+ SVI  CA    L     VH 
Sbjct: 251 LVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHA 310

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
            ++ ++ + +F    +L+ +Y KCGK   A+ +F+ +   D+  WNA++SG    G   +
Sbjct: 311 YVLRRE-DFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGE 369

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP--------- 176
           A  IF +M+  N+L    +++ +++  +  G  EEG K F  M+ R   +P         
Sbjct: 370 AKLIFKEMKEKNIL----SWMIMISGLAENGFGEEGLKLFSCMK-REGFEPCDYAFSGAI 424

Query: 177 -----------------QLEHYG---------AMVDLLGRAGHIEEAYGLITSMTMEPDV 210
                            QL   G         A++ +  + G +EEA  +  +M    D 
Sbjct: 425 KSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPC-LDS 483

Query: 211 VVWRALLSA 219
           V W AL++A
Sbjct: 484 VSWNALIAA 492



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 105/253 (41%), Gaps = 40/253 (15%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCAR-LGALNHAYW 62
           +D V +N+MI GF  N     A+  F +M     +PD FT+ASV+ G A  +        
Sbjct: 111 RDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQ 170

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGK----IQMAKEVFDTVQRNDVSVW-------- 110
            H   ++        +S AL+ +YS+C      +  A++VFD +   D   W        
Sbjct: 171 FHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYV 230

Query: 111 ------------------------NAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFL 146
                                   NAMISG    GL  +A  +  +M    +  D  T+ 
Sbjct: 231 KNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYP 290

Query: 147 GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM 206
            ++ AC++  L++ G++   ++  R       ++  ++V L  + G   EA  +   M  
Sbjct: 291 SVIRACANARLLQLGKQVHAYVLRREDFSFHFDN--SLVTLYYKCGKFNEARAIFEKMPA 348

Query: 207 EPDVVVWRALLSA 219
           + D+V W ALLS 
Sbjct: 349 K-DLVSWNALLSG 360



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 2/102 (1%)

Query: 53  RLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA 112
           R  +L  A  VH  II    + +  +   LID+Y K  ++  A+++FD +   D      
Sbjct: 26  RRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTT 85

Query: 113 MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
           M+SG    G  A A ++F +  +   + D++ +  ++T  SH
Sbjct: 86  MVSGYCASGDIALARSVFEETPV--SMRDTVMYNAMITGFSH 125


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  344 bits (882), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 166/411 (40%), Positives = 253/411 (61%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K++VS+N+++  + ++   +EA   F E+  +    + FTFAS++ G + +GA+     
Sbjct: 313 EKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQ 372

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+ I++   + N  +  ALI MYS+CG I+ A +VF+ +   +V  W +MI+G A HG 
Sbjct: 373 IHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGF 432

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A  A   F KM    V P+ +T++ +L+ACSH GL+ EG K+F  M+  + I P++EHY 
Sbjct: 433 ATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYA 492

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            +VDLLGR+GH+EEA  L+ SM  + D +V R  L ACR    ++LG+ A   I      
Sbjct: 493 CVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPH 552

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           D   Y+LLSN++    +W+    +R+ MK++ + K  G SW+E+   +H+F  GD SHP+
Sbjct: 553 DPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQ 612

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           AQ I   L  L  + K  G++P+T+ VL DV EE+KE  L+ HSEK+A+AYG + TS   
Sbjct: 613 AQEIYDELDQLALKIKELGYIPSTDFVLHDVEEEQKEQYLFQHSEKIAVAYGFISTSTSR 672

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IR+ KNLR+C DCH+  K  S + R+ I++RD  RFH F+ G CSC DYW
Sbjct: 673 PIRVFKNLRVCGDCHTAFKYFSIVRRKEIVLRDANRFHHFKDGTCSCNDYW 723



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 120/220 (54%), Gaps = 3/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFD-EALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           MP  +V+SW ++I G+V++   D EA+  F EM+  +V+P+ FTF+SV+  CA L  +  
Sbjct: 209 MPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWL 268

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              V+ L+++ ++     +  +LI MYS+CG ++ A++ FD +   ++  +N +++  A 
Sbjct: 269 GEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAK 328

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
              + +A  +F ++E      ++ TF  LL+  S  G + +G +    +  +   +  L 
Sbjct: 329 SLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRIL-KSGFKSNLH 387

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A++ +  R G+IE A+ +   M  + +V+ W ++++ 
Sbjct: 388 ICNALISMYSRCGNIEAAFQVFNEMG-DGNVISWTSMITG 426



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 124/272 (45%), Gaps = 47/272 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPD++VV+W  MI  F +     +A+  F +M+ S   PD+FT + V+  CA +G L+  
Sbjct: 105 MPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLG 164

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKC---GKIQMAKEVFDTVQRNDVSVWNAMISG- 116
              H L+++  ++L+  +  +L+DMY+KC   G +  A++VFD +  ++V  W A+I+G 
Sbjct: 165 RQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGY 224

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC------------------------ 152
           V   G   +A  +F +M    V P+  TF  +L AC                        
Sbjct: 225 VQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASI 284

Query: 153 -----------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL- 200
                      S CG +E  RK FD +      +  L  Y  +V+   ++ + EEA+ L 
Sbjct: 285 NCVGNSLISMYSRCGNMENARKAFDVL-----FEKNLVSYNTIVNAYAKSLNSEEAFELF 339

Query: 201 --ITSMTMEPDVVVWRALLSACRTFKRLELGE 230
             I       +   + +LLS   +   +  GE
Sbjct: 340 NEIEGAGTGVNAFTFASLLSGASSIGAIGKGE 371



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 111/221 (50%), Gaps = 7/221 (3%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D+VSW+++I  +  N +  EA+  F +ML     P+++ F  V   C+    ++    +
Sbjct: 5   RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKII 64

Query: 64  HNLIIEKK-IELNFILSAALIDMYSKC-GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
              +++    E +  +  ALIDM+ K  G ++ A +VFD +   +V  W  MI+     G
Sbjct: 65  FGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLG 124

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
            + DA  +F  M +   +PD  T  G+++AC+  GL+  GR+ F  +  +  +   +   
Sbjct: 125 FSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQ-FHCLVMKSGLDLDVCVG 183

Query: 182 GAMVDLLGRA---GHIEEAYGLITSMTMEPDVVVWRALLSA 219
            ++VD+  +    G +++A  +   M +  +V+ W A+++ 
Sbjct: 184 CSLVDMYAKCVADGSVDDARKVFDRMPVH-NVMSWTAIITG 223



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D +V+SW SMI GF ++     AL  F +ML + V P++ T+ +V+  C+ +G ++  
Sbjct: 412 MGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEG 471

Query: 61  Y-WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
                ++ +E  I       A ++D+  + G ++ A E+ +++  + D  V    +    
Sbjct: 472 LKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACR 531

Query: 119 IHG 121
           +HG
Sbjct: 532 VHG 534



 Score = 38.9 bits (89), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 2/117 (1%)

Query: 103 QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR 162
            + D+  W+A+IS  A +  A +A + F  M      P+   F G+  ACS+   +  G+
Sbjct: 3   NKRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGK 62

Query: 163 KYFDHMRSRYSIQPQLEHYGAMVDLLGRA-GHIEEAYGLITSMTMEPDVVVWRALLS 218
             F  +      +  +    A++D+  +  G +E AY +   M  + +VV W  +++
Sbjct: 63  IIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMP-DRNVVTWTLMIT 118


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  344 bits (882), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 178/414 (42%), Positives = 254/414 (61%), Gaps = 5/414 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D  +WN+MI  F R     EAL  F  M    V  +  +  SV+  CA L +L+H 
Sbjct: 295 MKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHG 354

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++  + + +  +++ LI MY KCG +  AK +F+     DV +WN+MI+G + H
Sbjct: 355 RQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQH 414

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  +F  M    V PD +TF+G+L+ACS+ G V+EG + F+ M+  Y ++P +EH
Sbjct: 415 GLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEH 474

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  MVDLLGRAG ++EA  L+  M MEPD +VW ALL ACR   +L+L EVA+  +++L 
Sbjct: 475 YACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLE 534

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD-RS 296
               G YVLLS+MY    RW   E +R+ + ++ V K  G SW+E+   +H F  GD +S
Sbjct: 535 PKNAGPYVLLSHMYATKGRWRDVEVLRKKINRR-VIKFPGCSWIEVEKKVHMFTGGDSKS 593

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HPE   I ++L  L    +  G+ P    VL DV EEEK  +L +HSE+LA+AYG+LK  
Sbjct: 594 HPEQHMITQMLEKLSGFLREAGYCPDGSFVLHDVDEEEKTHSLGYHSERLAVAYGLLKVP 653

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  IR+ KNLR+C DCHS IK+I+++  R II+RD  RFH F+ G CSC D+W
Sbjct: 654 EGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFHHFKDGSCSCKDFW 707



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 117/241 (48%), Gaps = 25/241 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++VVSW SM+ G+V+    +EA + F EM    V     ++  +I G  +   ++ A
Sbjct: 109 MPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNV----VSWTVMIGGLLKESRIDDA 164

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             + ++I EK +    ++   +I  Y + G++  A+E+FD ++  +V  W  M+SG A +
Sbjct: 165 KKLFDMIPEKDV----VVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKN 220

Query: 121 GLAADASAIFTKMEMFNVLP--DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           G    A       ++F V+P  + +++  +L   +  G ++E  + F+ M  ++ +    
Sbjct: 221 GRVDVAR------KLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVACN- 273

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
                M+   G AG +  A  +   M  E D   W A++   + F+R  L   A+   +R
Sbjct: 274 ----EMILQFGLAGEMHRARMMFEGMK-ERDEGTWNAMI---KVFERKGLDLEALGLFAR 325

Query: 239 L 239
           +
Sbjct: 326 M 326



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 118/261 (45%), Gaps = 38/261 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+KDVV   +MIGG+ +  R DEA   F EM    V    FT+ +++ G A+ G ++ A
Sbjct: 171 IPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNV----FTWTTMVSGYAKNGRVDVA 226

Query: 61  YWVHNLIIEK----------------KIELNFILSAAL-----------IDMYSKCGKIQ 93
             +  ++ E+                +++  F L  A+           I  +   G++ 
Sbjct: 227 RKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMH 286

Query: 94  MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
            A+ +F+ ++  D   WNAMI      GL  +A  +F +M+   V  +  + + +L+ C+
Sbjct: 287 RARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCA 346

Query: 154 HCGLVEEGRKYFDHMR-SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
               ++ GR+   H R  R      L     ++ +  + G +  A G+      + DVV+
Sbjct: 347 SLASLDHGRQV--HARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFK-DVVM 403

Query: 213 WRALLSACRTFKRLELGEVAI 233
           W ++++    + +  LGE A+
Sbjct: 404 WNSMITG---YSQHGLGEEAL 421



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 102/219 (46%), Gaps = 22/219 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P + + SWN+M+  +  + +  +AL  F +M     + +  +F  +I G  + G +  A
Sbjct: 47  LPQRTIASWNAMVSAYFESHKPRDALLLFDQM----PQRNTVSFNGMISGYVKNGMVADA 102

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V +++ E+    N +   +++  Y + G ++ A+++F  + R +V  W  MI G+   
Sbjct: 103 RKVFDVMPER----NVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKE 158

Query: 121 GLAADASAIFTKMEMFNVLP--DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
               DA       ++F+++P  D +    ++      G ++E R+ FD M+ R      +
Sbjct: 159 SRIDDAK------KLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVR-----NV 207

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             +  MV    + G ++ A  L   M  E + V W A+L
Sbjct: 208 FTWTTMVSGYAKNGRVDVARKLFEVMP-ERNEVSWTAML 245



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 23/210 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++ VS+N MI G+V+N    +A + F  M    V     ++ S++ G  + G +  A
Sbjct: 78  MPQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNV----VSWTSMVRGYVQEGMVEEA 133

Query: 61  ---YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
              +W       +    N +    +I    K  +I  AK++FD +   DV V   MI G 
Sbjct: 134 EKLFW-------EMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGY 186

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
              G   +A  +F +M++ NV     T+  +++  +  G V+  RK F+ M  R  +   
Sbjct: 187 CQVGRLDEARELFDEMKVRNVF----TWTTMVSGYAKNGRVDVARKLFEVMPERNEVS-- 240

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTME 207
              + AM+    ++G ++EA+ L  +M ++
Sbjct: 241 ---WTAMLMGYTQSGRMKEAFELFEAMPVK 267



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 22/196 (11%)

Query: 81  ALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVL 139
           A++  Y +  K + A  +FD + QRN VS +N MISG   +G+ ADA  +F  M   NV 
Sbjct: 57  AMVSAYFESHKPRDALLLFDQMPQRNTVS-FNGMISGYVKNGMVADARKVFDVMPERNV- 114

Query: 140 PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199
              +++  ++      G+VEE  K F  M  R  +      +  M+  L +   I++A  
Sbjct: 115 ---VSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVS-----WTVMIGGLLKESRIDDAKK 166

Query: 200 LITSMTMEPDVVVWRALLSACRTFKRLE-----LGEVAIVNISRLMGGDYVLLSNMYCYL 254
           L   M  E DVVV   ++       RL+       E+ + N+       +  + + Y   
Sbjct: 167 LF-DMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVF-----TWTTMVSGYAKN 220

Query: 255 KRWDTAENVREIMKKK 270
            R D A  + E+M ++
Sbjct: 221 GRVDVARKLFEVMPER 236


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  344 bits (882), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 174/418 (41%), Positives = 244/418 (58%), Gaps = 14/418 (3%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSS--KVEPDKFTFASVIYGCARLGALN-- 58
           ++DVV+W  MIGG+ ++   ++AL    EM     +  P+ FT +  +  CA L AL   
Sbjct: 437 ERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIG 496

Query: 59  ---HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
              HAY + N    ++  +   +S  LIDMY+KCG I  A+ VFD +   +   W ++++
Sbjct: 497 KQIHAYALRN----QQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMT 552

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           G  +HG   +A  IF +M       D +T L +L ACSH G++++G +YF+ M++ + + 
Sbjct: 553 GYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVS 612

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVN 235
           P  EHY  +VDLLGRAG +  A  LI  M MEP  VVW A LS CR   ++ELGE A   
Sbjct: 613 PGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEK 672

Query: 236 ISRLMG---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKA 292
           I+ L     G Y LLSN+Y    RW     +R +M+ KGV+K  G SW+E       F  
Sbjct: 673 ITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFV 732

Query: 293 GDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGI 352
           GD++HP A+ I ++L   +QR K  G++P T   L DV +EEK+  L+ HSEKLALAYGI
Sbjct: 733 GDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGI 792

Query: 353 LKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           L T  G  IRI+KNLR+C DCH+    +SR++   II+RD  RFH F+ G CSC  YW
Sbjct: 793 LTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 130/267 (48%), Gaps = 51/267 (19%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFF------------------------------- 29
           M  KDVVSWN+M+ G+ +  RF++A+R F                               
Sbjct: 290 MSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEA 349

Query: 30  ----REMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIEL--------NFI 77
               R+MLSS ++P++ T  SV+ GCA +GAL H   +H   I+  I+L        N +
Sbjct: 350 LGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMV 409

Query: 78  LSAALIDMYSKCGKIQMAKEVFDTV--QRNDVSVWNAMISGVAIHGLAADASAIFTKM-- 133
           ++  LIDMY+KC K+  A+ +FD++  +  DV  W  MI G + HG A  A  + ++M  
Sbjct: 410 IN-QLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFE 468

Query: 134 EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGRAG 192
           E     P++ T    L AC+    +  G++   + +R++ +  P L     ++D+  + G
Sbjct: 469 EDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVP-LFVSNCLIDMYAKCG 527

Query: 193 HIEEAYGLITSMTMEPDVVVWRALLSA 219
            I +A  +  +M M  + V W +L++ 
Sbjct: 528 SISDARLVFDNM-MAKNEVTWTSLMTG 553



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 106/226 (46%), Gaps = 3/226 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D  V  WNS+I  +  N   ++ L  F  M S    PD +TF  V   C  + ++     
Sbjct: 89  DAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGES 148

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            H L +      N  +  AL+ MYS+C  +  A++VFD +   DV  WN++I   A  G 
Sbjct: 149 AHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGK 208

Query: 123 AADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              A  +F++M   F   PD+IT + +L  C+  G    G++      +   IQ      
Sbjct: 209 PKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVG- 267

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
             +VD+  + G ++EA  + ++M+++ DVV W A+++      R E
Sbjct: 268 NCLVDMYAKCGMMDEANTVFSNMSVK-DVVSWNAMVAGYSQIGRFE 312



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 109/257 (42%), Gaps = 45/257 (17%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLGALNHAYWV 63
           DVVSWNS+I  + +  +   AL  F  M +     PD  T  +V+  CA LG  +    +
Sbjct: 192 DVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQL 251

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   +  ++  N  +   L+DMY+KCG +  A  VF  +   DV  WNAM++G +  G  
Sbjct: 252 HCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRF 311

Query: 124 ADASAIFTKME-----------------------------------MFNVLPDSITFLGL 148
            DA  +F KM+                                      + P+ +T + +
Sbjct: 312 EDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISV 371

Query: 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG-------AMVDLLGRAGHIEEAYGLI 201
           L+ C+  G +  G++   +   +Y I  +   +G        ++D+  +   ++ A  + 
Sbjct: 372 LSGCASVGALMHGKEIHCYA-IKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMF 430

Query: 202 TSMT-MEPDVVVWRALL 217
            S++  E DVV W  ++
Sbjct: 431 DSLSPKERDVVTWTVMI 447



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 12/128 (9%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K+ V+W S++ G+  +   +EAL  F EM     + D  T   V+Y C+  G ++  
Sbjct: 539 MMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQG 598

Query: 61  YWVHNLIIEKKIELNFILS------AALIDMYSKCGKIQMAKEVFDTVQRNDVS-VWNAM 113
               N     +++  F +S      A L+D+  + G++  A  + + +       VW A 
Sbjct: 599 MEYFN-----RMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAF 653

Query: 114 ISGVAIHG 121
           +S   IHG
Sbjct: 654 LSCCRIHG 661


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  344 bits (882), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 173/412 (41%), Positives = 254/412 (61%), Gaps = 4/412 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA-LNHAY 61
           +KD+V+W++MI G+ +    + A+R F +M   K++P+++TF+ +I  CA   A +    
Sbjct: 69  EKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINACAAPTAGVEQGK 128

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H   I+ +      +S+AL+ MYSK G I+ A EVF   +  D+  WN++ISG A HG
Sbjct: 129 QLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIISGYAQHG 188

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
               A  +F +M+  N+  D +TF+G+++AC+H GL  EG++YFD M   + I+P++EHY
Sbjct: 189 YGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQRYFDIMVKDHHIEPRMEHY 248

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISR 238
             MVDL GRAG + +A  +I  M       VWR LL+A    + LE+G++A   ++++  
Sbjct: 249 SCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLAASCIHRNLEVGKLAADKLISLQP 308

Query: 239 LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
                YVLL+NMY  +  W     VR++M++K V+K  G SW+E+    + F AGD SHP
Sbjct: 309 QNPASYVLLTNMYASVGNWKERAKVRKLMEEKKVKKVAGYSWIEVKNKTYTFLAGDVSHP 368

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
            +  I   L  L  + K  G+ P T  V  DV EE KE  L  HSE+LA+A+G++ T PG
Sbjct: 369 LSNQIYAKLEELSCQLKGAGYQPDTSYVFQDVDEEHKEAILSQHSERLAIAFGLIGTPPG 428

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T ++I KNLR+C DCHS IK+IS L  R I+VRD  RFH F+GGLCSCGDYW
Sbjct: 429 TPLQIVKNLRVCGDCHSVIKLISILEGRDIVVRDSNRFHHFKGGLCSCGDYW 480



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 96/190 (50%), Gaps = 9/190 (4%)

Query: 32  MLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK 91
           M    ++P+ FT+++++   A+ G     + +H   I++    +  +  AL+D Y K G 
Sbjct: 1   MSREGIKPNDFTYSTIL--TAQPGV--SPFEMHAQAIKRNYVKSPSVGTALLDAYVKRGN 56

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           +  A +VF  ++  D+  W+AMI G A  G    A  IF +M    + P+  TF G++ A
Sbjct: 57  VDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINA 116

Query: 152 C-SHCGLVEEGRKYFD-HMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
           C +    VE+G++     ++SR++    L    A++ +  + G IE A+ +      E D
Sbjct: 117 CAAPTAGVEQGKQLHAWSIKSRFN--NALCVSSALLTMYSKRGDIESAFEVFKRQR-ERD 173

Query: 210 VVVWRALLSA 219
           +V W +++S 
Sbjct: 174 LVSWNSIISG 183


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  344 bits (882), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 178/411 (43%), Positives = 250/411 (60%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D + VSWN+++ GF ++   +EAL  F EM ++++   + T++SV+  CA   ++ HA  
Sbjct: 427 DANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQ 486

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  I +     + ++  +LID Y+KCG I+ A +VF  +   D+  WNA+ISG A+HG 
Sbjct: 487 IHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQ 546

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           AADA  +F +M   NV  + ITF+ LL+ CS  GLV  G   FD MR  + I+P +EHY 
Sbjct: 547 AADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYT 606

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            +V LLGRAG + +A   I  +   P  +VWRALLS+C   K + LG  +   I  +   
Sbjct: 607 CIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQ 666

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           D   YVLLSNMY      D    +R+ M+  GVRK  G SW+E+ G IH F  G   HP+
Sbjct: 667 DETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPD 726

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
            + I+ +L  L  +T  EG++P   +VL DV +E+K   L+ HSE+LALAYG++ T PG 
Sbjct: 727 MRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMTPPGH 786

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI KNLR C DCH+   +IS++++R IIVRD  RFH FE G CSCGDYW
Sbjct: 787 PIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 837



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 115/220 (52%), Gaps = 4/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  DV+  + MI  + ++ + ++A   F  ++ S V P++++ +SV+  C  +  L+  
Sbjct: 324 IPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFG 383

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +HN  I+   E +  +  AL+D Y+KC  +  + ++F +++  +   WN ++ G +  
Sbjct: 384 KQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQS 443

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTAC-SHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           GL  +A ++F +M+   +    +T+  +L AC S   +   G+ +    +S ++    + 
Sbjct: 444 GLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIG 503

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +  +++D   + G+I +A  +   + ME D++ W A++S 
Sbjct: 504 N--SLIDTYAKCGYIRDALKVFQHL-MERDIISWNAIISG 540



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 110/230 (47%), Gaps = 5/230 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD V W +M+  +  N   + A R F +M  S  +P+ F   SV+     L ++     +
Sbjct: 226 KDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGI 285

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   I+   +    +  AL+DMY+KCG I+ A+  F+ +  +DV + + MIS  A     
Sbjct: 286 HGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQN 345

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  +F ++   +VLP+  +   +L AC++   ++ G++  +H   +   +  L    A
Sbjct: 346 EQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHA-IKIGHESDLFVGNA 404

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI 233
           ++D   +   ++ +  + +S+  + + V W  ++     F +  LGE A+
Sbjct: 405 LMDFYAKCNDMDSSLKIFSSLR-DANEVSWNTIVVG---FSQSGLGEEAL 450



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 103/219 (47%), Gaps = 4/219 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++++VS+ +++    +   F+ A   FR +     E ++F   +++     + A   A
Sbjct: 122 MPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLA 181

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+   +   + N  + + LID YS C  +  A+ VF+ + R D  VW AM+S  + +
Sbjct: 182 GGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSEN 241

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD-HMRSRYSIQPQLE 179
               +A  +F+KM +    P+      +L A      V  G+      +++    +P + 
Sbjct: 242 DCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVG 301

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
             GA++D+  + G I++A  L   M    DV++   ++S
Sbjct: 302 --GALLDMYAKCGDIKDAR-LAFEMIPYDDVILLSFMIS 337


>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
 gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
          Length = 595

 Score =  344 bits (882), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 174/416 (41%), Positives = 248/416 (59%), Gaps = 6/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML--SSKVEPDKFTFASVIYGCARLGALN 58
           MP +D V+WN +I    RN R  +AL+ F EM    S  EPD  T   ++  C  LGAL+
Sbjct: 180 MPARDAVAWNVLISCCARNRRTKDALKLFEEMRGRDSGAEPDDVTCILLLQACTSLGALD 239

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               V     E        +  +LI MYS+CG +  A  VF    +  V  W+AMISG+A
Sbjct: 240 FGEQVWAYAEEHGYGAKLKVRNSLIAMYSRCGCVDKAYRVFCGTPQKSVVTWSAMISGLA 299

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            +G   DA + F +M   +V PD  TF G+L+ACSH GLV+EG ++FD MR  Y ++P +
Sbjct: 300 ANGFGDDAISAFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNV 359

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITS-MTMEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
            HYG +VDL+GRAG ++EAY L+T+ M + PD  +WR LL ACR    ++LGE  I N+ 
Sbjct: 360 RHYGCIVDLMGRAGLLDEAYELVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVISNLI 419

Query: 238 RL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294
            L     GDYVLL N Y  +  W     VR++M++KG++ + G + +E  G +++F A D
Sbjct: 420 ELKAQQAGDYVLLLNTYAAVGEWSKVSEVRKLMQEKGIQTTPGCTTVEHNGEVYEFIADD 479

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
            +HP    I + L  + ++ +  G++P     L D+  E KE  L +HSEKLA+A+ +L 
Sbjct: 480 DAHPRKVEIYEKLNEINKQLRIAGYVPNVSSELHDLDSEGKESALTYHSEKLAIAFALLV 539

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T     IR++KNLR+C DCH++ K+ S +  R++IVRDR RFH F+GG CSC DYW
Sbjct: 540 TPQNRPIRLAKNLRVCVDCHNFTKVFSGIYNRLVIVRDRTRFHHFQGGKCSCNDYW 595


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  343 bits (881), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 167/411 (40%), Positives = 252/411 (61%), Gaps = 4/411 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA-LNHAYW 62
           KDVVSW++M+  + +    D A   F +M    ++P++FT +SVI  CA   A ++    
Sbjct: 468 KDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQ 527

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            H + I+ +      +S+AL+ MY++ G I+ A+ +F+     D+  WN+M+SG A HG 
Sbjct: 528 FHAISIKHRCHDALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGY 587

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           +  A  +F +ME   +  D +TFL ++  C+H GLVEEG++YFD M   Y I P +EHY 
Sbjct: 588 SQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYA 647

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            MVDL  RAG ++EA  LI  M+     +VWR LL AC+  K +ELG++A   ++++   
Sbjct: 648 CMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPF 707

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
               YVLLSN+Y    +W   + VR++M  K V+K  G SW+++   +H F A D+SHP 
Sbjct: 708 DSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPL 767

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           ++ I   L ++  + K EG+ P T   L +V+EE+KE  L  HSE+LALA+G++ T PG 
Sbjct: 768 SEQIYAKLRAMTTKLKQEGYCPDTSFALHEVAEEQKEAMLAMHSERLALAFGLIATPPGA 827

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            + I KNLR+C DCH+ IKM+S++  R I++RD  RFH F  G+CSCGD+W
Sbjct: 828 PLHIFKNLRVCGDCHTVIKMVSKIEDREIVMRDCSRFHHFNSGVCSCGDFW 878



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 107/217 (49%), Gaps = 7/217 (3%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++VVSW +MI G ++N     A   F  M    V P+ FT+++++   A + +L     +
Sbjct: 371 QNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILT--ASVASL--PPQI 426

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I+   E   I+  AL+  YSK    + A  +F  + + DV  W+AM++  A  G +
Sbjct: 427 HAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDS 486

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTAC-SHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             A+ IF KM M  + P+  T   ++ AC S    V+ GR+ F  +  ++     L    
Sbjct: 487 DGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQ-FHAISIKHRCHDALCVSS 545

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A+V +  R G IE A  +    T + D+V W ++LS 
Sbjct: 546 ALVSMYARKGSIESAQCIFERQT-DRDLVSWNSMLSG 581



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 109/224 (48%), Gaps = 9/224 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++VV+W S++ G++++    + +  F  M +  V P+  TFASV+   A  G ++  
Sbjct: 165 MPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLG 224

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   ++        +  +L++MY+KCG ++ A+ VF  ++  D+  WN +++G+ ++
Sbjct: 225 RRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLN 284

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F        +    T+  ++  C++   +   R+    +  R         
Sbjct: 285 GHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKR-----GFHS 339

Query: 181 YG----AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
           YG    A++D   +AG +  A  +   M+   +VV W A+++ C
Sbjct: 340 YGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGC 383



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 33/232 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D+VSWN+++ G V N    EAL+ F +  SS     + T+A+VI  CA +  L  A
Sbjct: 266 METRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLA 325

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
             +H+ ++++       +  AL+D YSK G++  A ++F  +    +V  W AMI+G   
Sbjct: 326 RQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQ 385

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G    A+A+F++M    V P+  T+  +LTA                  S  S+ PQ+ 
Sbjct: 386 NGDVPLAAALFSRMREDGVAPNDFTYSTILTA------------------SVASLPPQIH 427

Query: 180 HY-------------GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
                           A++    +  + EEA   I  M  + DVV W A+L+
Sbjct: 428 AQVIKTNYECTSIVGTALLASYSKLCNTEEALS-IFKMIDQKDVVSWSAMLT 478



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY- 61
           D+D+VSWNSM+ G+ ++    +AL  FR+M +  +E D  TF SVI GCA  G +     
Sbjct: 569 DRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQR 628

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIH 120
           +  ++  +  I       A ++D+YS+ GK+  A  + + +       VW  ++    +H
Sbjct: 629 YFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGACKVH 688



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 96/199 (48%), Gaps = 8/199 (4%)

Query: 78  LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFN 137
           +  +L+DMY K   +   ++VF+ + + +V  W ++++G    G  +D   +F +M    
Sbjct: 141 VGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEG 200

Query: 138 VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLEHYGAMVDLLGRAGHIEE 196
           V P+S+TF  +L+  +  G+V+ GR+   H +S ++     +    +++++  + G +EE
Sbjct: 201 VWPNSVTFASVLSVVASQGMVDLGRRV--HAQSVKFGCCSTVFVCNSLMNMYAKCGLVEE 258

Query: 197 AYGLITSMTMEPDVVVWRALLSAC----RTFKRLELGEVAIVNISRLMGGDYVLLSNMYC 252
           A  +   M    D+V W  L++         + L+L   +  +I+ L    Y  +  +  
Sbjct: 259 ARVVFCGMETR-DMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCA 317

Query: 253 YLKRWDTAENVREIMKKKG 271
            +K+   A  +   + K+G
Sbjct: 318 NIKQLGLARQLHSSVLKRG 336


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  343 bits (881), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 184/415 (44%), Positives = 248/415 (59%), Gaps = 8/415 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK--VEPDKFTFASVIYGCARLGALNHA 60
           D+ VV+W  +IGG  ++   +EAL  F +ML     V P+ FT +  +  CARLGAL   
Sbjct: 439 DRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFG 498

Query: 61  YWVHNLIIEKKIELNFILSA-ALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVA 118
             +H  ++  + E   +  A  LIDMYSK G +  A+ VFD + QRN VS W ++++G  
Sbjct: 499 RQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVS-WTSLMTGYG 557

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG   +A  IF +M+   ++PD +TF+ +L ACSH G+V++G  YF+ M   + + P  
Sbjct: 558 MHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGA 617

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           EHY  MVDLL RAG ++EA  LI  M M+P   VW ALLSACR +  +ELGE A   +  
Sbjct: 618 EHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLE 677

Query: 239 LMGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L  G+   Y LLSN+Y   + W     +R +MK  G++K  G SW++       F AGD 
Sbjct: 678 LESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDW 737

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SHP +Q I  +L  L+QR K+ G++P     L DV +EEK   L  HSEKLALAYGIL T
Sbjct: 738 SHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTT 797

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           +PG  IRI+KNLR C DCHS    IS ++   IIVRD  RFH F+ G CSC  YW
Sbjct: 798 APGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 852



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 14/227 (6%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +VV+W+++I G+ +     EAL  FR+M     EP+  T  S++ GCA  G L H    H
Sbjct: 331 NVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETH 390

Query: 65  NLIIEKKIEL-------NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV--WNAMIS 115
              I+  + L       + ++  ALIDMYSKC   + A+ +FD +   D SV  W  +I 
Sbjct: 391 CHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIG 450

Query: 116 GVAIHGLAADASAIFTKMEMFN--VLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRY 172
           G A HG A +A  +F++M   +  V+P++ T    L AC+  G +  GR+   + +R+R+
Sbjct: 451 GNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRF 510

Query: 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                L     ++D+  ++G ++ A  +  +M  + + V W +L++ 
Sbjct: 511 E-SAMLFVANCLIDMYSKSGDVDAARVVFDNMH-QRNGVSWTSLMTG 555



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 6/226 (2%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           V  WN +I   V     ++ L+ +R M      PD +TF  V+  C  + +      VH 
Sbjct: 91  VFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHA 150

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGL 122
           ++     E N  +   L+ MY +CG  + A++VFD ++     D+  WN++++     G 
Sbjct: 151 VVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGD 210

Query: 123 AADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
           +  A  +F +M E   + PD+++ + +L AC+  G    G++   +   R  +   +   
Sbjct: 211 SIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYAL-RSGLFEDVFVG 269

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
            A+VD+  + G +EEA  +   M ++ DVV W A+++      R +
Sbjct: 270 NAVVDMYAKCGMMEEANKVFERMKVK-DVVSWNAMVTGYSQIGRFD 314



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 86/166 (51%), Gaps = 1/166 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLGALNHAYWV 63
           D+VSWNS++  +++      A++ F  M     + PD  +  +V+  CA +GA +    V
Sbjct: 194 DLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQV 253

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   +   +  +  +  A++DMY+KCG ++ A +VF+ ++  DV  WNAM++G +  G  
Sbjct: 254 HGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRF 313

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169
            DA  +F K+    +  + +T+  ++   +  GL  E    F  MR
Sbjct: 314 DDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMR 359



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  ++ VSW S++ G+  + R +EAL+ F EM    + PD  TF  V+Y C+  G ++  
Sbjct: 541 MHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQG 600

Query: 61  Y-WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             + + +  +  +       A ++D+ S+ G++  A E+   +  +   +VW A++S   
Sbjct: 601 INYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACR 660

Query: 119 IHG 121
           ++ 
Sbjct: 661 VYA 663


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  343 bits (881), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 168/411 (40%), Positives = 252/411 (61%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K++VS+N+++ G+ +N + +EA   F E+  + +    FTFAS++ G A +GA+     
Sbjct: 87  EKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQ 146

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  +++   + N  +  ALI MYS+CG I+ A +VF+ ++  +V  W +MI+G A HG 
Sbjct: 147 IHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGF 206

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A  A  +F KM      P+ IT++ +L+ACSH G++ EG+K+F+ M   + I P++EHY 
Sbjct: 207 ATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYA 266

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            MVDLLGR+G + EA   I SM +  D +VWR LL ACR     ELG  A   I      
Sbjct: 267 CMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPD 326

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           D   Y+LLSN++    +W     +R+ MK++ + K  G SW+E+   +H+F  G+ SHP+
Sbjct: 327 DPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQ 386

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           A  I + L  L  + K  G++P T+ VL D+ EE+KE  L+ HSEK+A+A+G++ TS   
Sbjct: 387 AWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSK 446

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI KNLR+C DCH+ IK IS    R I+VRD  RFH  + G+CSC DYW
Sbjct: 447 PIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 497



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D++V+SW SMI GF ++     AL  F +ML +  +P++ T+ +V+  C+ +G ++  
Sbjct: 186 MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 245

Query: 61  YWVHN-LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
               N +  E  I       A ++D+  + G +  A E  +++    D  VW  ++    
Sbjct: 246 QKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACR 305

Query: 119 IHG 121
           +HG
Sbjct: 306 VHG 308



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 100/221 (45%), Gaps = 43/221 (19%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFD-EALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           MP+ +V+SW ++I  +V++   D EA+  F +M+S+ V                      
Sbjct: 21  MPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVN--------------------- 59

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
                             +  +LI MY++ G+++ A++ FD +   ++  +NA++ G A 
Sbjct: 60  -----------------CVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAK 102

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQL 178
           +  + +A  +F ++    +   + TF  LL+  +  G + +G +     ++  Y     +
Sbjct: 103 NLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCI 162

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               A++ +  R G+IE A+ +   M  + +V+ W ++++ 
Sbjct: 163 --CNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITG 200



 Score = 41.2 bits (95), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 22/169 (13%)

Query: 85  MYSKC---GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG-LAADASAIFTKMEMFNVLP 140
           MY+KC   G +  +++VF+ +  ++V  W A+I+     G    +A  +F KM     + 
Sbjct: 1   MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKM-----IS 55

Query: 141 DSITFLG--LLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAY 198
            S+  +G  L++  +  G +E+ RK FD +      +  L  Y A+VD   +    EEA+
Sbjct: 56  ASVNCVGNSLISMYARSGRMEDARKAFDIL-----FEKNLVSYNAIVDGYAKNLKSEEAF 110

Query: 199 GL---ITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDY 244
            L   I    +      + +LLS   +   +  GE       RL+ G Y
Sbjct: 111 LLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQI---HGRLLKGGY 156


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  343 bits (881), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 175/413 (42%), Positives = 246/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +PD + VSWNS+I   V N    E + +F +M    +E D+ T  +++  C  LG    A
Sbjct: 198 IPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLA 257

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L+          ++ AL+D Y+K G++  +  VF  V   D   W AM++G A H
Sbjct: 258 ESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAH 317

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  +F  M    + PD +TF  LL+ACSH GLV EG+ YF+ M   Y I+P+++H
Sbjct: 318 GLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDH 377

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG-EVA--IVNIS 237
           Y  MVDLLGR G + +AY +I +M MEP+  VW ALL ACR    +ELG EVA  ++N+ 
Sbjct: 378 YSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINME 437

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
            L   +Y++LSNMY   + W  A  VR ++K++G++++ G S +E     H F  GDRSH
Sbjct: 438 PLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSH 497

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE + I   L  L+ + +  G+   TE VL DV EE KE  +  HSEKLA+A+G+L +  
Sbjct: 498 PETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKE 557

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  + I+KNLRIC DCHS  K+IS + +R II+RD  RFH F  G CSC DYW
Sbjct: 558 GEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 5/219 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD+VSWNS+I GF R         F+       V+P++ T  S+I  C+  GAL+  
Sbjct: 100 MPHKDLVSWNSLISGFSRCLHMS-LTAFYTMKFEMSVKPNEVTILSMISACS--GALDAG 156

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            ++H   I+    L   ++ +LI+MY K G +  A  +F+ +   +   WN++I+    +
Sbjct: 157 KYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTN 216

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +    F KM    +  D  T L LL AC H G+ +        M        ++  
Sbjct: 217 GCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCT-GFGAKITI 275

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++D   + G +  +YG+ T +    D V W A+L+ 
Sbjct: 276 ATALLDTYAKLGRLSASYGVFTEVGF-ADRVAWTAMLAG 313



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 106/214 (49%), Gaps = 9/214 (4%)

Query: 9   WNS-MIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           WNS ++  F   +R    L   R   L  +    +   ++++       ++++   +H  
Sbjct: 5   WNSSILYNFFIQSRTQYPLLLHRSFHLVRQCATPEAIVSALLIAVNSCPSISNCREIHAR 64

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           + +  +  +  +   L+  Y+K G  + A ++FD +   D+  WN++ISG +   L    
Sbjct: 65  VFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFS-RCLHMSL 123

Query: 127 SAIFT-KMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           +A +T K EM +V P+ +T L +++ACS  G ++ G KY      +     +++   +++
Sbjct: 124 TAFYTMKFEM-SVKPNEVTILSMISACS--GALDAG-KYIHGFGIKVGGTLEVKVANSLI 179

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++ G++G +  A  L  ++  +P+ V W ++++A
Sbjct: 180 NMYGKSGDLTSACRLFEAIP-DPNTVSWNSIIAA 212


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  343 bits (881), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 184/415 (44%), Positives = 248/415 (59%), Gaps = 8/415 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK--VEPDKFTFASVIYGCARLGALNHA 60
           D+ VV+W  +IGG  ++   +EAL  F +ML     V P+ FT +  +  CARLGAL   
Sbjct: 458 DRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFG 517

Query: 61  YWVHNLIIEKKIELNFILSA-ALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVA 118
             +H  ++  + E   +  A  LIDMYSK G +  A+ VFD + QRN VS W ++++G  
Sbjct: 518 RQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVS-WTSLMTGYG 576

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG   +A  IF +M+   ++PD +TF+ +L ACSH G+V++G  YF+ M   + + P  
Sbjct: 577 MHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGA 636

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           EHY  MVDLL RAG ++EA  LI  M M+P   VW ALLSACR +  +ELGE A   +  
Sbjct: 637 EHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLE 696

Query: 239 LMGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L  G+   Y LLSN+Y   + W     +R +MK  G++K  G SW++       F AGD 
Sbjct: 697 LESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDW 756

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SHP +Q I  +L  L+QR K+ G++P     L DV +EEK   L  HSEKLALAYGIL T
Sbjct: 757 SHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTT 816

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           +PG  IRI+KNLR C DCHS    IS ++   IIVRD  RFH F+ G CSC  YW
Sbjct: 817 APGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 871



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 119/227 (52%), Gaps = 14/227 (6%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +VV+W+++I G+ +     EAL  FR+ML    EP+  T  S++ GCA  G L H    H
Sbjct: 350 NVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETH 409

Query: 65  NLIIEKKIEL-------NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV--WNAMIS 115
              I+  + L       + ++  ALIDMYSKC   + A+ +FD +   D SV  W  +I 
Sbjct: 410 CHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIG 469

Query: 116 GVAIHGLAADASAIFTKMEMFN--VLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRY 172
           G A HG A +A  +F++M   +  V+P++ T    L AC+  G +  GR+   + +R+R+
Sbjct: 470 GNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRF 529

Query: 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                L     ++D+  ++G ++ A  +  +M  + + V W +L++ 
Sbjct: 530 E-SAMLFVANCLIDMYSKSGDVDAARVVFDNMH-QRNGVSWTSLMTG 574



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 6/226 (2%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           V  WN +I   V     ++ L+ +R M      PD +TF  V+  C  + +      VH 
Sbjct: 110 VFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHA 169

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGL 122
           ++     E N  +   L+ MY +CG  + A++VFD ++     D+  WN++++     G 
Sbjct: 170 VVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGD 229

Query: 123 AADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
           +  A  +F +M E   + PD+++ + +L AC+  G    G++   +   R  +   +   
Sbjct: 230 SIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYAL-RSGLFEDVFVG 288

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
            A+VD+  + G +EEA  +   M ++ DVV W A+++      R +
Sbjct: 289 NAVVDMYAKCGMMEEANKVFERMKVK-DVVSWNAMVTGYSQIGRFD 333



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 134/320 (41%), Gaps = 55/320 (17%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLGALNHAYWV 63
           D+VSWNS++  +++      A++ F  M     + PD  +  +V+  CA +GA +    V
Sbjct: 213 DLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQV 272

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   +   +  +  +  A++DMY+KCG ++ A +VF+ ++  DV  WNAM++G +  G  
Sbjct: 273 HGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRF 332

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            DA  +F K+    +  + +T+  ++   +  GL  E    F  M               
Sbjct: 333 DDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQML-------------- 378

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA-------IVNI 236
              L G                 EP+VV   +LLS C +   L  G+         I+N+
Sbjct: 379 ---LCGS----------------EPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNL 419

Query: 237 SRLMGGDYVLLSN----MYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKA 292
                GD +++ N    MY   K    A  + +++  K        +W  L G       
Sbjct: 420 DENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPK---DRSVVTWTVLIG------- 469

Query: 293 GDRSHPEAQAIDKILGSLIQ 312
           G+  H EA    ++   ++Q
Sbjct: 470 GNAQHGEANEALELFSQMLQ 489



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  ++ VSW S++ G+  + R +EAL+ F EM    + PD  TF  V+Y C+  G ++  
Sbjct: 560 MHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQG 619

Query: 61  Y-WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             + + +  +  +       A ++D+ S+ G++  A E+   +  +   +VW A++S   
Sbjct: 620 INYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACR 679

Query: 119 IHG 121
           ++ 
Sbjct: 680 VYA 682


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  343 bits (880), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 168/411 (40%), Positives = 252/411 (61%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K++VS+N+++ G+ +N + +EA   F E+  + +    FTFAS++ G A +GA+     
Sbjct: 224 EKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQ 283

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  +++   + N  +  ALI MYS+CG I+ A +VF+ ++  +V  W +MI+G A HG 
Sbjct: 284 IHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGF 343

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A  A  +F KM      P+ IT++ +L+ACSH G++ EG+K+F+ M   + I P++EHY 
Sbjct: 344 ATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYA 403

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            MVDLLGR+G + EA   I SM +  D +VWR LL ACR     ELG  A   I      
Sbjct: 404 CMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPD 463

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           D   Y+LLSN++    +W     +R+ MK++ + K  G SW+E+   +H+F  G+ SHP+
Sbjct: 464 DPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQ 523

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           A  I + L  L  + K  G++P T+ VL D+ EE+KE  L+ HSEK+A+A+G++ TS   
Sbjct: 524 AWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSK 583

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI KNLR+C DCH+ IK IS    R I+VRD  RFH  + G+CSC DYW
Sbjct: 584 PIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 634



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 116/225 (51%), Gaps = 14/225 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++++V+W  MI  F +     +A+  F +M  S   PD+FT++SV+  C  LG L   
Sbjct: 16  MPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALG 75

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKC---GKIQMAKEVFDTVQRNDVSVWNAMISGV 117
             +H+ +I   + L+  +  +L+DMY+KC   G +  +++VF+ +  ++V  W A+I+  
Sbjct: 76  KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAY 135

Query: 118 AIHG-LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
           A  G    +A  +F KM   ++ P+  +F  +L AC +      G + +      Y+++ 
Sbjct: 136 AQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS-----YAVKL 190

Query: 177 QLEHY----GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
            +        +++ +  R+G +E+A      +  E ++V + A++
Sbjct: 191 GIASVNCVGNSLISMYARSGRMEDARKAF-DILFEKNLVSYNAIV 234



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFD-EALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           MP+ +V+SW ++I  + ++   D EA+  F +M+S  + P+ F+F+SV+  C  L     
Sbjct: 120 MPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYT 179

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              V++  ++  I     +  +LI MY++ G+++ A++ FD +   ++  +NA++ G A 
Sbjct: 180 GEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAK 239

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQL 178
           +  + +A  +F ++    +   + TF  LL+  +  G + +G +     ++  Y     +
Sbjct: 240 NLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCI 299

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               A++ +  R G+IE A+ +   M  + +V+ W ++++ 
Sbjct: 300 --CNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITG 337



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D++V+SW SMI GF ++     AL  F +ML +  +P++ T+ +V+  C+ +G ++  
Sbjct: 323 MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 382

Query: 61  YWVHN-LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
               N +  E  I       A ++D+  + G +  A E  +++    D  VW  ++    
Sbjct: 383 QKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACR 442

Query: 119 IHG 121
           +HG
Sbjct: 443 VHG 445



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 7/129 (5%)

Query: 95  AKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
           A +VFD +   ++  W  MI+  A  G A DA  +F  ME+   +PD  T+  +L+AC+ 
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 155 CGLVEEGRKYFDHMRS-RYSIQPQLEHYGAMVDLLGRA---GHIEEAYGLITSMTMEPDV 210
            GL+  G++   H R  R  +   +    ++VD+  +    G ++++  +   M  E +V
Sbjct: 69  LGLLALGKQL--HSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNV 125

Query: 211 VVWRALLSA 219
           + W A+++A
Sbjct: 126 MSWTAIITA 134


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  343 bits (880), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 175/413 (42%), Positives = 246/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +PD + VSWNS+I   V N    E + +F +M    +E D+ T  +++  C  LG    A
Sbjct: 198 IPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLA 257

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L+          ++ AL+D Y+K G++  +  VF  V   D   W AM++G A H
Sbjct: 258 ESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAH 317

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  +F  M    + PD +TF  LL+ACSH GLV EG+ YF+ M   Y I+P+++H
Sbjct: 318 GLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDH 377

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG-EVA--IVNIS 237
           Y  MVDLLGR G + +AY +I +M MEP+  VW ALL ACR    +ELG EVA  ++N+ 
Sbjct: 378 YSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINME 437

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
            L   +Y++LSNMY   + W  A  VR ++K++G++++ G S +E     H F  GDRSH
Sbjct: 438 PLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSH 497

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE + I   L  L+ + +  G+   TE VL DV EE KE  +  HSEKLA+A+G+L +  
Sbjct: 498 PETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKE 557

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  + I+KNLRIC DCHS  K+IS + +R II+RD  RFH F  G CSC DYW
Sbjct: 558 GEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 5/219 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD+VSWNS+I GF R         F+       V+P++ T  S+I  C   GAL+  
Sbjct: 100 MPHKDLVSWNSLISGFSRCLHMS-LTAFYTMKFEMSVKPNEVTILSMISACN--GALDAG 156

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            ++H   I+    L   ++ +LI+MY K G +  A  +F+ +   +   WN++I+    +
Sbjct: 157 KYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTN 216

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +    F KM    +  D  T L LL AC H G+ +        M        ++  
Sbjct: 217 GCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCT-GFGAKITI 275

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++D   + G +  +YG+ T +    D V W A+L+ 
Sbjct: 276 ATALLDTYAKLGRLSASYGVFTEVGF-ADRVAWTAMLAG 313



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 106/214 (49%), Gaps = 9/214 (4%)

Query: 9   WNS-MIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           WNS ++  F   +R    L   R   L  +    +   ++++       ++++   +H  
Sbjct: 5   WNSSILYNFFIQSRTQYPLLLHRSFHLVRQCATPEAIVSALLIAVNSCPSISNCREIHAR 64

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           + +  +  +  +   L+  Y+K G  + A ++FD +   D+  WN++ISG +   L    
Sbjct: 65  VFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFS-RCLHMSL 123

Query: 127 SAIFT-KMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           +A +T K EM +V P+ +T L +++AC+  G ++ G KY      +     +++   +++
Sbjct: 124 TAFYTMKFEM-SVKPNEVTILSMISACN--GALDAG-KYIHGFGIKVGGTLEVKVANSLI 179

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++ G++G +  A  L  ++  +P+ V W ++++A
Sbjct: 180 NMYGKSGDLTSACRLFEAIP-DPNTVSWNSIIAA 212


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  343 bits (880), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 175/410 (42%), Positives = 248/410 (60%), Gaps = 3/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +DVV W+++I GF RN R  E++  FR+ML+  V P+  TFAS++  C+ LG+L     V
Sbjct: 279 RDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSV 338

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I   +EL+     + IDMY+KCG I  A  VF  +   +V  W+ MI+G  +HGL 
Sbjct: 339 HGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLC 398

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
           A+A  +F +M   N LP+S+TF+ +L+ACSH G +EEG  +F  M   Y I P  EHY  
Sbjct: 399 AEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYAC 458

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG-EVA--IVNISRLM 240
           MVDLLGRAG I+EA   I +M  EP    W ALL ACR  +R EL  EVA  ++ +    
Sbjct: 459 MVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRAELAEEVAKKLLPLESDQ 518

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G YV+LSN+Y  +  W+  +  R  M +KG+ K  G + +E+   ++ F + DR   + 
Sbjct: 519 SGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHKIVGFTSIEIEEKLYLFSSEDRFAYKN 578

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
             I+ +  SL +R +  G++P    VL DV +E K+  L  HSEKLA+ +G+L +  G  
Sbjct: 579 TQIESLWNSLKERMRELGYVPDLRFVLHDVDDEVKQEVLCGHSEKLAIVFGLLNSGEGMP 638

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IRI+KN+R+C DCH+  K IS + RR II+RD  RFH  + G+CSCGDYW
Sbjct: 639 IRITKNMRVCGDCHTASKFISLITRRKIIMRDVKRFHHVQDGVCSCGDYW 688



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 115/220 (52%), Gaps = 3/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P K+ V W  MI G +  +        F  M  S  E D F    +I  C  + A    
Sbjct: 174 VPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEG 233

Query: 61  YWVHNLIIEKK-IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              H L I+K  I+ NF L  +L+DMY KCG +  A ++F+ +   DV VW+A+I+G A 
Sbjct: 234 KTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFAR 293

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G A ++ ++F +M   +V P+S+TF  ++ ACS  G +++GR    +M  R  ++  ++
Sbjct: 294 NGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYM-IRNGVELDVK 352

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +Y + +D+  + G I  AY +   +  E +V  W  +++ 
Sbjct: 353 NYTSFIDMYAKCGCIVTAYRVFCQIP-EKNVFSWSTMING 391



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 100/216 (46%), Gaps = 1/216 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +++ SWN+++    +N  F + L+ F+ ML      D F     +  C  L     A   
Sbjct: 76  ENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKLF 135

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H+L I+ ++E +  ++ AL+++Y++ G ++ A +VF+ V   +  +W  MI G       
Sbjct: 136 HSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEE 195

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
                +F++M       D     GL+ AC +    +EG+ +      +  I        +
Sbjct: 196 FGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTS 255

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +VD+  + G ++ A  L   ++   DVVVW A+++ 
Sbjct: 256 LVDMYMKCGFLDFALKLFEEISYR-DVVVWSAIIAG 290



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 4/136 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+K+V SW++MI GF  +    EAL  F EM S    P+  TF SV+  C+  G +   
Sbjct: 377 IPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEG 436

Query: 61  YWVHNLIIEKKIELNFILS--AALIDMYSKCGKIQMAKEVFDTVQRND-VSVWNAMISGV 117
            W H   + +   +  +    A ++D+  + GKI  A    + +      S W A++   
Sbjct: 437 -WSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGAC 495

Query: 118 AIHGLAADASAIFTKM 133
            IH  A  A  +  K+
Sbjct: 496 RIHRRAELAEEVAKKL 511


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  343 bits (880), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 171/414 (41%), Positives = 250/414 (60%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA-LNH 59
           +P KD+V+W++M+ G  +    ++A+  F +++   V+P+++TF+SVI  C+   A + H
Sbjct: 465 IPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEH 524

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H   ++        +S+AL+ MYSK G I+ A++VF   +  D+  WN+MI+G   
Sbjct: 525 GKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQ 584

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG A  A  +F  M+   +  D +TF+G+LTAC+H GLVEEG KYF+ M   Y I  ++E
Sbjct: 585 HGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIE 644

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY  MVDL  RAG  ++A  +I  M       +WR LL+ACR  + LELG++A   +  L
Sbjct: 645 HYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSL 704

Query: 240 MGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
              D   YVLLSN++     W+   +VR++M ++ V+K  G SW+E+   I  F AGD S
Sbjct: 705 QPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVS 764

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP +  +   L  L  + K  G+ P T  V  DV EE KE  L  HSE+LA+AYG++   
Sbjct: 765 HPFSDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALP 824

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PG  I+I KNLRIC DCH+ I++IS +  R +IVRD  RFH F+GG+CSCG YW
Sbjct: 825 PGAPIQIEKNLRICGDCHNVIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 102/228 (44%), Gaps = 23/228 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K+VVSW S++ G+ RN   DE +    +M    V P+ FTFA+V+   A    +   
Sbjct: 165 MGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGG 224

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH +I++   E    +  ALI MY K   +  A+ VFD++   D   WN MI G A  
Sbjct: 225 VQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAI 284

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACS-----------HCGLVEEGRKYFDHMR 169
           G   +   +F +M +  V      F   L  CS           HCG+V+ G ++   +R
Sbjct: 285 GFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIR 344

Query: 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           +            A++    +   ++EA+ L +      +VV W A++
Sbjct: 345 T------------ALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMI 380



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 107/217 (49%), Gaps = 9/217 (4%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYG--CARLGALNHAYW 62
           +VV+W +MIGGFV+N   ++A+  F +M    V P+ FT+++V+ G   + L  L     
Sbjct: 372 NVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQL----- 426

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            H  II+   E    ++ AL+D Y K G +  +  VF ++   D+  W+AM++G+A    
Sbjct: 427 -HAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRD 485

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           +  A  +F ++    V P+  TF  ++ ACS      E  K       +      L    
Sbjct: 486 SEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSS 545

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A++ +  + G+IE A  + T    E D+V W ++++ 
Sbjct: 546 ALLTMYSKKGNIESAEKVFTRQE-ERDIVSWNSMITG 581



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 99/217 (45%), Gaps = 7/217 (3%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D V+WN MIGG+     + E  + F  M  + V+  +  F + +  C++   LN    +
Sbjct: 269 RDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQL 328

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR-NDVSVWNAMISGVAIHGL 122
           H  +++   E    +  AL+  YSKC  +  A ++F      ++V  W AMI G   +  
Sbjct: 329 HCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNN 388

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
              A  +F +M    V P+  T+  +L       L    + +   +++ Y   P +    
Sbjct: 389 NEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLL---SQLHAQIIKAYYEKVPSVA--T 443

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A++D   + G++ E+  +  S+  + D+V W A+L+ 
Sbjct: 444 ALLDAYVKTGNVVESARVFYSIPAK-DIVAWSAMLTG 479



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 77/160 (48%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P KD+  +N ++  F RN    EAL  F+++ SS +  D  T +  +  C  L       
Sbjct: 65  PLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGR 124

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            VH   ++     +  +  +L+DMY K    +  + +FD +   +V  W +++SG A +G
Sbjct: 125 QVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNG 184

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG 161
           L  +   +  +M+M  V P+  TF  +L A +   ++E G
Sbjct: 185 LNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGG 224


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  343 bits (880), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 165/393 (41%), Positives = 241/393 (61%), Gaps = 4/393 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++ VSW++M+ G+V+     EAL  F  M +  V PD      V+  CA+LG L   
Sbjct: 303 MPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQG 362

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH  +    I +   L  AL+DMY+KCG++Q+A EVF  ++  +V  W  MI G+A+H
Sbjct: 363 KWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMH 422

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  ++A  +F++ME   V PD I F+G L AC+H GLV++GR+ FD M  +Y I+P++EH
Sbjct: 423 GRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEH 482

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI---VNIS 237
           YG MVDLL R G + EA  ++  M M+PD ++W AL++ CR  K +EL E  +   + + 
Sbjct: 483 YGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELE 542

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLL N+Y    R  +A  +R +M++KGV K+ G S +E+ GVIHQF  GD SH
Sbjct: 543 PDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSH 602

Query: 298 PEAQAIDKILGSLIQRTK-SEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           P  + I      +  R +  EG++P  + VL+D+ EEEKE  L  HSEK+A+A+ ++ TS
Sbjct: 603 PFIEEILSKWDEIDSRIRLEEGYVPDKKEVLLDIEEEEKENALSRHSEKMAIAFALINTS 662

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVII 389
               IRI KNLR+CHDCH   K+IS++    ++
Sbjct: 663 DDMPIRIVKNLRVCHDCHHVTKLISKVFDLTVV 695



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 75/144 (52%), Gaps = 2/144 (1%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
           LI  Y++ G++  A+ +FD +   +   W+AM++G    G   +A  +F +M+   V PD
Sbjct: 283 LITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPD 342

Query: 142 SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
               +G+L AC+  G++E+G+    ++++  +I+  +    A+VD+  + G ++ A  + 
Sbjct: 343 DTVLVGVLAACAQLGVLEQGKWVHGYLKAN-NIRITVFLGTALVDMYAKCGEMQLAMEVF 401

Query: 202 TSMTMEPDVVVWRALLSACRTFKR 225
             M  E +V+ W  ++       R
Sbjct: 402 KVMK-EKNVLAWTTMIKGLAMHGR 424



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 18/142 (12%)

Query: 141 DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL 200
           D+ TF  L+TA +  G V + R  FD M +R ++      + AMV+   +AG   EA GL
Sbjct: 276 DASTFNTLITAYARAGRVTDARALFDEMPARNAVS-----WSAMVNGYVQAGDGREALGL 330

Query: 201 ITSMTME---PDVVVWRALLSACRTFKRLELG-------EVAIVNISRLMGGDYVLLSNM 250
              M  +   PD  V   +L+AC     LE G       +   + I+  +G     L +M
Sbjct: 331 FARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLG---TALVDM 387

Query: 251 YCYLKRWDTAENVREIMKKKGV 272
           Y        A  V ++MK+K V
Sbjct: 388 YAKCGEMQLAMEVFKVMKEKNV 409


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 168/411 (40%), Positives = 252/411 (61%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K++VS+N+++ G+ +N + +EA   F E+  + +    FTFAS++ G A +GA+     
Sbjct: 219 EKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQ 278

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  +++   + N  +  ALI MYS+CG I+ A +VF+ ++  +V  W +MI+G A HG 
Sbjct: 279 IHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGF 338

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A  A  +F KM      P+ IT++ +L+ACSH G++ EG+K+F+ M   + I P++EHY 
Sbjct: 339 ATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYA 398

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            MVDLLGR+G + EA   I SM +  D +VWR LL ACR     ELG  A   I      
Sbjct: 399 CMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPD 458

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           D   Y+LLSN++    +W     +R+ MK++ + K  G SW+E+   +H+F  G+ SHP+
Sbjct: 459 DPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQ 518

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           A  I + L  L  + K  G++P T+ VL D+ EE+KE  L+ HSEK+A+A+G++ TS   
Sbjct: 519 AWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSK 578

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI KNLR+C DCH+ IK IS    R I+VRD  RFH  + G+CSC DYW
Sbjct: 579 PIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 629



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 116/225 (51%), Gaps = 14/225 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++++V+W  MI  F +     +A+  F +M  S   PD+FT++SV+  C  LG L   
Sbjct: 11  MPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALG 70

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKC---GKIQMAKEVFDTVQRNDVSVWNAMISGV 117
             +H+ +I   + L+  +  +L+DMY+KC   G +  +++VF+ +  ++V  W A+I+  
Sbjct: 71  KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAY 130

Query: 118 AIHG-LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
           A  G    +A  +F KM   ++ P+  +F  +L AC +      G + +      Y+++ 
Sbjct: 131 AQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS-----YAVKL 185

Query: 177 QLEHY----GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
            +        +++ +  R+G +E+A      +  E ++V + A++
Sbjct: 186 GIASVNCVGNSLISMYARSGRMEDARKAF-DILFEKNLVSYNAIV 229



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFD-EALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           MP+ +V+SW ++I  + ++   D EA+  F +M+S  + P+ F+F+SV+  C  L     
Sbjct: 115 MPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYT 174

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              V++  ++  I     +  +LI MY++ G+++ A++ FD +   ++  +NA++ G A 
Sbjct: 175 GEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAK 234

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQL 178
           +  + +A  +F ++    +   + TF  LL+  +  G + +G +     ++  Y     +
Sbjct: 235 NLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCI 294

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               A++ +  R G+IE A+ +   M  + +V+ W ++++ 
Sbjct: 295 --CNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITG 332



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D++V+SW SMI GF ++     AL  F +ML +  +P++ T+ +V+  C+ +G ++  
Sbjct: 318 MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 377

Query: 61  YWVHN-LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
               N +  E  I       A ++D+  + G +  A E  +++    D  VW  ++    
Sbjct: 378 QKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACR 437

Query: 119 IHG 121
           +HG
Sbjct: 438 VHG 440



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 7/129 (5%)

Query: 95  AKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
           A +VFD +   ++  W  MI+  A  G A DA  +F  ME+   +PD  T+  +L+AC+ 
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 155 CGLVEEGRKYFDHMRS-RYSIQPQLEHYGAMVDLLGRA---GHIEEAYGLITSMTMEPDV 210
            GL+  G++   H R  R  +   +    ++VD+  +    G ++++  +   M  E +V
Sbjct: 64  LGLLALGKQL--HSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNV 120

Query: 211 VVWRALLSA 219
           + W A+++A
Sbjct: 121 MSWTAIITA 129


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1111

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 179/411 (43%), Positives = 250/411 (60%), Gaps = 4/411 (0%)

Query: 4    KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
            K++VSWN+MI   ++N   +E L +F       ++PD+ TF +V+  C  +G +  +  +
Sbjct: 701  KNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGI 760

Query: 64   HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
            H LI+      N  ++ AL+D+Y+K G+++ +  VF  +   D   W AM++  A HG  
Sbjct: 761  HGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYG 820

Query: 124  ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             DA   F  M  + + PD +TF  LL ACSH GLVEEGR YF+ M  RY I+P+L+HY  
Sbjct: 821  RDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSC 880

Query: 184  MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM--- 240
            MVDL+GR+G +++AYGLI  M MEP   VW ALL ACR +K  +LG  A   +  L    
Sbjct: 881  MVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRD 940

Query: 241  GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G +Y++LSN+Y     W  A  +R +MK+KG+ ++ G S++E    IH+F  GD SHPE+
Sbjct: 941  GRNYIMLSNIYSASGLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIHKFVVGDWSHPES 1000

Query: 301  QAIDKILGSLIQRTKSE-GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
            + I K L  + ++ KSE GF   TE VL DV E+ KE  +  HSEK+A+A+G+L  SP  
Sbjct: 1001 EKIQKKLKEIRKKMKSELGFKSRTEFVLHDVDEDVKEEMINQHSEKIAMAFGLLVISPME 1060

Query: 360  EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             I I KNLRIC DCH   K IS + +R II+RD  RFH F  G CSC DYW
Sbjct: 1061 PIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLEGSCSCRDYW 1111



 Score =  340 bits (871), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 168/405 (41%), Positives = 246/405 (60%), Gaps = 3/405 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KD ++WN+MI G+ +     EAL  F  M    V+ +  +  SV+  C +LGAL+  
Sbjct: 208 MPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGVKVNGVSMISVLSACTQLGALDQG 267

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W H+ I   KI++   L   L+D+Y+KCG +  A EVF  ++  +V  W++ ++G+A++
Sbjct: 268 RWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAMN 327

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G       +F+ M+   V P+++TF+ +L  CS  G V+EG+K+FD MR+ + I+PQL+H
Sbjct: 328 GFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQLDH 387

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG +VDL  RAG +E+A  +I  M M+    VW +LL A R +K LELG +A   ++ + 
Sbjct: 388 YGCLVDLYARAGRLEDAVSIIQQMPMKAHAAVWSSLLHASRMYKNLELGVLASKKMLELE 447

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y     WD   +VR+ MK KGVRK  G S +E+ G +H+F  GD+SH
Sbjct: 448 TSNHGAYVLLSNIYADSDDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSH 507

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+   ID +   + +R +  G+   T  V+ D+ EEEKE  L  HSEK A+A+GI+    
Sbjct: 508 PKYNEIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKA 567

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGG 402
              IRI KNLR+C DCH    MIS++  R IIVRDR RFH F+ G
Sbjct: 568 DVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDG 612



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 110/243 (45%), Gaps = 35/243 (14%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSSK--VEPDKFTFASVIYGCARLGALNHAYWVHNLI 67
           NSMI    ++   +++  F+  +LSS   ++PD +T   ++  C  LG       VH + 
Sbjct: 83  NSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACTGLGMRETGLQVHGMT 142

Query: 68  IEKKIE-------------------------------LNFILSAALIDMYSKCGKIQMAK 96
           I +  +                                +F+   A++   ++CG +  A+
Sbjct: 143 IRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVCRTAMVTACARCGDVAFAR 202

Query: 97  EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
           ++F+ +   D   WNAMISG A  G + +A  +F  M++  V  + ++ + +L+AC+  G
Sbjct: 203 KLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGVKVNGVSMISVLSACTQLG 262

Query: 157 LVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRAL 216
            +++GR    ++  R  I+  +     +VDL  + G +++A  +   M  E +V  W + 
Sbjct: 263 ALDQGRWAHSYIE-RNKIKITVRLGTTLVDLYAKCGDMDKAMEVFWGME-EKNVYTWSSA 320

Query: 217 LSA 219
           L+ 
Sbjct: 321 LNG 323



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 91/198 (45%), Gaps = 14/198 (7%)

Query: 32  MLSSKV--EPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKC 89
           M+ S+V   P++ TF S+I  C   G       +H L+++  +     +  AL+++Y K 
Sbjct: 626 MMRSEVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKT 685

Query: 90  GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
           G +  + ++F+ +   ++  WN MI     +GLA +  A F       + PD  TFL +L
Sbjct: 686 GDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVL 745

Query: 150 TACSHCGLVE-----EGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
             C   G+V       G   F    +   I        A++DL  + G +E++  +   +
Sbjct: 746 RVCEDIGVVRLSQGIHGLIMFCGFNANTCITT------ALLDLYAKLGRLEDSSTVFLEI 799

Query: 205 TMEPDVVVWRALLSACRT 222
           T  PD + W A+L+A  T
Sbjct: 800 T-SPDSMAWTAMLAAYAT 816


>gi|297734518|emb|CBI15765.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 159/217 (73%), Positives = 191/217 (88%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVV+WNSMIGG VRN RF+EALRFFREML+S VEPD FTFASVI GCARLG+ +HA
Sbjct: 141 MLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHA 200

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH L+IEKKI+LNFILS+ALID+YSKCG+I  AK+VF+++Q +DVSVWN+MI+G+AIH
Sbjct: 201 ELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIH 260

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GLA DA  +F++MEM +V PDSITF+G+LTACSHCGLVE+GR+YFD MR  YSIQPQLEH
Sbjct: 261 GLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEH 320

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           YGAMVDLLGRAG +EEAY +I +M MEPD+V+WRALL
Sbjct: 321 YGAMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALL 357



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 22/187 (11%)

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           YW  +LI       N I+++ +     K G+   AK VF  + R DV  WN+MI G   +
Sbjct: 110 YWGFDLITA-----NLIIASLM-----KVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRN 159

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A   F +M   NV PD  TF  ++  C+  G           M  +  IQ     
Sbjct: 160 ERFEEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEK-KIQLNFIL 218

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRAL----------LSACRTFKRLELGE 230
             A++DL  + G I  A  +  S+  + DV VW ++          L A   F ++E+  
Sbjct: 219 SSALIDLYSKCGRINTAKKVFNSIQHD-DVSVWNSMINGLAIHGLALDAIGVFSQMEMES 277

Query: 231 VAIVNIS 237
           V+  +I+
Sbjct: 278 VSPDSIT 284


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 169/410 (41%), Positives = 252/410 (61%), Gaps = 4/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K+ VSWN++I GF R A  +  L  F EM  +      FT++S+    AR+GAL    WV
Sbjct: 225 KNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWV 284

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I+   +L   +   ++ MY+K G +  A++VFD + + D+  WN M++ +A +GL 
Sbjct: 285 HAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLG 344

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A A F ++    +  + ITFL +LTACSH GLV+EG+ YFD M+  Y++QP+++HY +
Sbjct: 345 KEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKD-YNVQPEIDHYVS 403

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD 243
            VDLLGRAG ++EA   +  M MEP   VW ALL ACR  K  ++G+ A  ++  L   D
Sbjct: 404 FVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDD 463

Query: 244 Y---VLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
               VLL N+Y    +W+ A  VR++MK  GV+K    SW+++   +H F A D +HP++
Sbjct: 464 TGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKS 523

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
             I ++   +  R K  G++P T  VL+ ++E+E+E  L +HSEK+ALA+ ++    G  
Sbjct: 524 GDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGAS 583

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IRI KN+RIC DCHS  K +S++ +R I+VRD  RFH F  G CSCGDYW
Sbjct: 584 IRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 633



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 120/241 (49%), Gaps = 9/241 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVVSW  +I G+ +N    EA+    +ML ++  P+ FTF S++      G  +  
Sbjct: 121 MPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIG 180

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD-TVQRNDVSVWNAMISGVAI 119
             +H L ++   + +  + +AL+DMY++C ++ MA  VFD  V +N+VS WNA+I+G A 
Sbjct: 181 EQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVS-WNALIAGFAR 239

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
                     F +M+         T+  + +A +  G +E+GR    H+    S Q    
Sbjct: 240 KADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIK--SGQKLTA 297

Query: 180 HYG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
             G  M+ +  ++G + +A  +   M  + D+V W  +L+A   +    LG+ A+ +   
Sbjct: 298 FVGNTMLGMYAKSGSMVDARKVFDRMD-KRDLVTWNTMLTALAQYG---LGKEAVAHFEE 353

Query: 239 L 239
           +
Sbjct: 354 I 354



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 104/243 (42%), Gaps = 9/243 (3%)

Query: 26  LRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM 85
           LR    + + ++ P    + S+I  CA+   L  A  +H  +    +  +  L  +LI M
Sbjct: 45  LRELDLLHAGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHM 104

Query: 86  YSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145
           Y KCG +  A+ VFD +   DV  W  +I+G A + + A+A  +   M      P+  TF
Sbjct: 105 YCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTF 164

Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
             LL A   CG    G +    +  +Y+    +    A++D+  R   ++ A  ++    
Sbjct: 165 TSLLKATGACGGCSIGEQ-MHALAVKYNWDEDVYVGSALLDMYARCEQMDMAI-MVFDRL 222

Query: 206 MEPDVVVWRALLSACRTFKRLELGEVAIVNISRL----MGGDYVLLSNMYCYLKRWDTAE 261
           +  + V W AL++    F R   GE  ++  + +     G  +   S+M+    R    E
Sbjct: 223 VSKNEVSWNALIAG---FARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALE 279

Query: 262 NVR 264
             R
Sbjct: 280 QGR 282



 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 1/121 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D+V+WN+M+    +     EA+  F E+    ++ ++ TF SV+  C+  G +   
Sbjct: 323 MDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEG 382

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAK-EVFDTVQRNDVSVWNAMISGVAI 119
               +++ +  ++       + +D+  + G ++ A   VF        +VW A++    +
Sbjct: 383 KHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRM 442

Query: 120 H 120
           H
Sbjct: 443 H 443


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 174/413 (42%), Positives = 241/413 (58%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D VSW +MI G+ ++    EALR F  M       ++ +F+S +  CA + AL   
Sbjct: 364 MPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELG 423

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++   E    +  AL+ MY KCG I+ A ++F  +   D+  WN MI+G + H
Sbjct: 424 KQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRH 483

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A   F  M+   + PD  T + +L+ACSH GLV++GR+YF  M   Y ++P  +H
Sbjct: 484 GFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQH 543

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  MVDLLGRAG +EEA+ L+ +M  EPD  +W  LL A R     EL E A   I  + 
Sbjct: 544 YACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAME 603

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    RW     +R  M+ KGV+K  G SW+E+    H F  GD  H
Sbjct: 604 PENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFH 663

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE   I   L  L  R K  G++  T +VL DV EEEKE  + +HSE+LA+AYGI++ S 
Sbjct: 664 PEKDEIFAFLEDLDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSS 723

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH+ IK ++++  R+II+RD  RFH F+ G CSCGDYW
Sbjct: 724 GRPIRVIKNLRVCEDCHNAIKYMAKVTGRLIILRDNNRFHHFKDGSCSCGDYW 776



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 117/272 (43%), Gaps = 62/272 (22%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D+VSWN MI G+VRN    +A    RE+     E D  ++ +++ G A+ G ++ A
Sbjct: 116 MPERDLVSWNVMIKGYVRNRNLGKA----RELFERMPERDVCSWNTILSGYAQNGCVDDA 171

Query: 61  YWVHNLIIEKK-IELNFILSA--------------------------ALIDMYSKCGKIQ 93
             V + + EK  +  N +LSA                           L+  + K  KI 
Sbjct: 172 RRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIV 231

Query: 94  MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
            A++ FD+++  DV  WN +I+G A +G   +A  +F +  + +V     T+  +++   
Sbjct: 232 EARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVF----TWTAMVSGYI 287

Query: 154 HCGLVEEGRKYFDHMRSR------------------------YSIQP--QLEHYGAMVDL 187
              +VEE R+ FD M  R                        + + P   +  +  M+  
Sbjct: 288 QNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITG 347

Query: 188 LGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             + G I EA  L   M  + D V W A+++ 
Sbjct: 348 YAQCGKISEAKNLFDKMP-KRDPVSWAAMIAG 378



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 116/261 (44%), Gaps = 38/261 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYG---------- 50
           M  +DVVSWN++I G+ +N   DEA + F E   S V  D FT+ +++ G          
Sbjct: 240 MKVRDVVSWNTIITGYAQNGEIDEARQLFDE---SPVH-DVFTWTAMVSGYIQNRMVEEA 295

Query: 51  ---CARLGALNHAYW-------VHNLIIEKKIEL-------NFILSAALIDMYSKCGKIQ 93
                R+   N   W       V    +E   EL       N      +I  Y++CGKI 
Sbjct: 296 RELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKIS 355

Query: 94  MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
            AK +FD + + D   W AMI+G +  G + +A  +F  ME      +  +F   L+ C+
Sbjct: 356 EAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCA 415

Query: 154 HCGLVEEGRKYFDHM-RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
               +E G++    + +  Y     + +  A++ +  + G IEEA  L   M  + D+V 
Sbjct: 416 DVVALELGKQLHGRLVKGGYETGCFVGN--ALLLMYCKCGSIEEANDLFKEMAGK-DIVS 472

Query: 213 WRALLSACRTFKRLELGEVAI 233
           W  +++    + R   GE A+
Sbjct: 473 WNTMIAG---YSRHGFGEEAL 490



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 104/221 (47%), Gaps = 22/221 (9%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP    VS+N+MI G++RN  F+ A   F EM     E D  ++  +I G  R   L  A
Sbjct: 85  MPRWSSVSYNAMISGYLRNGEFELARMLFDEM----PERDLVSWNVMIKGYVRNRNLGKA 140

Query: 61  YWVHNLIIEKKI-ELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVA 118
             +   + E+ +   N ILS      Y++ G +  A+ VFD + ++NDVS WNA++S   
Sbjct: 141 RELFERMPERDVCSWNTILSG-----YAQNGCVDDARRVFDRMPEKNDVS-WNALLSAYV 194

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            +    +A  +F   E + +    +++  LL        + E R++FD M+ R  +    
Sbjct: 195 QNSKLEEACVLFGSRENWAL----VSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVS--- 247

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +  ++    + G I+EA  L     +  DV  W A++S 
Sbjct: 248 --WNTIITGYAQNGEIDEARQLFDESPVH-DVFTWTAMVSG 285


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 169/414 (40%), Positives = 251/414 (60%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++DV++W +MI G+ +N + DEA+  FR M+    EP+  T A+V+  CA L  L++ 
Sbjct: 574 MNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYG 633

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAI 119
             +H   I    E +  +S A+I +Y++ G + +A+ VFD +  R +   W +MI  +A 
Sbjct: 634 KQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQ 693

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HGL   A  +F +M    V PD IT++G+L+AC+H G V++G++Y++ M++ + I PQ+ 
Sbjct: 694 HGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMS 753

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HY  MVDL  RAG + EA+  I  M + PD VVW +LL+ACR  K  +L E+A   +++I
Sbjct: 754 HYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSI 813

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G Y  L+N+Y    RW+ A  + ++ K KGV+K  G SW  + G +H F A D  
Sbjct: 814 DPHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVL 873

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+  +I +    + +  K  GF+P    VL DV +E KE  L  HSEKLA+A+G++ T 
Sbjct: 874 HPQRDSIYRKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTP 933

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             T +RI KNLR+C+DCH+ IK IS+ + R IIVRD  RFH F  G CSC DYW
Sbjct: 934 EKTTLRIMKNLRVCNDCHTAIKFISKFVDREIIVRDATRFHHFRDGYCSCKDYW 987



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 125/269 (46%), Gaps = 40/269 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           M ++ +VSWN++I G+ +N     AL+FF  MLS S +EPD FT  SV+  CA L  L  
Sbjct: 439 MVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKM 498

Query: 60  AYWVHNLIIEKKI---------------------------------ELNFILSAALIDMY 86
              +H+ I+   +                                 +LN I   AL++ Y
Sbjct: 499 GKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGY 558

Query: 87  SKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFL 146
            K G  + A+E+FD +   DV  W AMI G   +G   +A  +F  M +    P+S T  
Sbjct: 559 VKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLA 618

Query: 147 GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ-LEHYGAMVDLLGRAGHIEEAYGLITSMT 205
            +L+AC+    ++ G++   H ++  S+Q Q +    A++ +  R+G +  A  +   + 
Sbjct: 619 AVLSACASLAYLDYGKQI--HCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQIC 676

Query: 206 MEPDVVVWRALLSACRTFKRLELGEVAIV 234
              + + W +++ A     +  LGE A+V
Sbjct: 677 WRKETITWTSMIVA---MAQHGLGEQAVV 702



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 120/270 (44%), Gaps = 37/270 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPD+D VSW  MI G  R+ RF +A++ F +M+S    P +FT  +V+  CA + A    
Sbjct: 307 MPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVG 366

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +++  +     ++ +++ MY KCG  + A+ VF+ +Q   VS WN M+S     
Sbjct: 367 RKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQ 426

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A ++F  M   ++    +++  ++   +  GL     K+F  M            
Sbjct: 427 GRMELAVSMFENMVERSI----VSWNTIIAGYNQNGLDGMALKFFSRM------------ 470

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
                               +++ +MEPD     ++LSAC   + L++G+     I R  
Sbjct: 471 --------------------LSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTG 510

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKK 269
           M     +++ +     +  + E  R IM +
Sbjct: 511 MPCSSQIMNALISTYAKSGSVETARRIMDQ 540


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 168/411 (40%), Positives = 252/411 (61%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K++VS+N+++ G+ +N + +EA   F E+  + +    FTFAS++ G A +GA+     
Sbjct: 399 EKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQ 458

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  +++   + N  +  ALI MYS+CG I+ A +VF+ ++  +V  W +MI+G A HG 
Sbjct: 459 IHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGF 518

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A  A  +F KM      P+ IT++ +L+ACSH G++ EG+K+F+ M   + I P++EHY 
Sbjct: 519 ATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYA 578

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            MVDLLGR+G + EA   I SM +  D +VWR LL ACR     ELG  A   I      
Sbjct: 579 CMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPD 638

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           D   Y+LLSN++    +W     +R+ MK++ + K  G SW+E+   +H+F  G+ SHP+
Sbjct: 639 DPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQ 698

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           A  I + L  L  + K  G++P T+ VL D+ EE+KE  L+ HSEK+A+A+G++ TS   
Sbjct: 699 AWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSK 758

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI KNLR+C DCH+ IK IS    R I+VRD  RFH  + G+CSC DYW
Sbjct: 759 PIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 809



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 115/225 (51%), Gaps = 14/225 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++++V+W  MI  F +     +A+  F +M  S   PD+FT++SV+  C  LG L   
Sbjct: 191 MPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALG 250

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKC---GKIQMAKEVFDTVQRNDVSVWNAMISGV 117
             +H+ +I   + L+  +  +L+DMY+KC   G +  +++VF+ +  ++V  W A+I+  
Sbjct: 251 KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAY 310

Query: 118 AIHG-LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
              G    +A  +F KM   ++ P+  +F  +L AC +      G + +      Y+++ 
Sbjct: 311 VQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS-----YAVKL 365

Query: 177 QLEHY----GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
            +        +++ +  R+G +E+A      +  E ++V + A++
Sbjct: 366 GIASVNCVGNSLISMYARSGRMEDARKAF-DILFEKNLVSYNAIV 409



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 117/226 (51%), Gaps = 17/226 (7%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D+VSW++M+  F  N+   +A+  F +ML     P+++ FA+VI  C+     N+A WV
Sbjct: 91  RDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNA---NYA-WV 146

Query: 64  HNLII-----EKKIELNFILSAALIDMYSK-CGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
             +I         +E +  +   LIDM+ K  G +  A +VFD +   ++  W  MI+  
Sbjct: 147 GEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRF 206

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQP 176
           A  G A DA  +F  ME+   +PD  T+  +L+AC+  GL+  G++   H R  R  +  
Sbjct: 207 AQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQL--HSRVIRLGLAL 264

Query: 177 QLEHYGAMVDLLGRA---GHIEEAYGLITSMTMEPDVVVWRALLSA 219
            +    ++VD+  +    G ++++  +   M  E +V+ W A+++A
Sbjct: 265 DVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNVMSWTAIITA 309



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFD-EALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           MP+ +V+SW ++I  +V++   D EA+  F +M+S  + P+ F+F+SV+  C  L     
Sbjct: 295 MPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYT 354

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              V++  ++  I     +  +LI MY++ G+++ A++ FD +   ++  +NA++ G A 
Sbjct: 355 GEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAK 414

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQL 178
           +  + +A  +F ++    +   + TF  LL+  +  G + +G +     ++  Y     +
Sbjct: 415 NLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCI 474

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               A++ +  R G+IE A+ +   M  + +V+ W ++++ 
Sbjct: 475 --CNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITG 512



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 95/252 (37%), Gaps = 46/252 (18%)

Query: 20  ARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILS 79
            R   A      M      PD  T++ ++  C R         VH  +++  +EL+ ++ 
Sbjct: 5   GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 64

Query: 80  AALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNV 138
             LI +YSKCG  + A+ +F+ +  + D+  W+AM+S  A + +   A   F  M     
Sbjct: 65  NTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGF 124

Query: 139 LPDSITFLGLLTACSH---------------------------CGLVE----------EG 161
            P+   F  ++ ACS+                           C L++            
Sbjct: 125 YPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSA 184

Query: 162 RKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLS 218
            K FD M  R      L  +  M+    + G   +A  L   M +    PD   + ++LS
Sbjct: 185 YKVFDKMPER-----NLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLS 239

Query: 219 ACRTFKRLELGE 230
           AC     L LG+
Sbjct: 240 ACTELGLLALGK 251



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D++V+SW SMI GF ++     AL  F +ML +  +P++ T+ +V+  C+ +G ++  
Sbjct: 498 MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 557

Query: 61  YWVHN-LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
               N +  E  I       A ++D+  + G +  A E  +++    D  VW  ++    
Sbjct: 558 QKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACR 617

Query: 119 IHG 121
           +HG
Sbjct: 618 VHG 620


>gi|357126224|ref|XP_003564788.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Brachypodium distachyon]
          Length = 515

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 165/413 (39%), Positives = 247/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVV+W S++ G  R+   D ALR +R+M++S VEPD++  A+ +  CA    L   
Sbjct: 103 MPRRDVVTWTSLLTGLARSGSHDAALRVYRDMVASGVEPDEYVVAAALSSCAGSTTLELG 162

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   +   +E    +  +L+ MY+K G ++ A++VFD  +      W A+I G A +
Sbjct: 163 QSVHATAVRLGLEPFLSVGNSLVSMYAKTGSLREARKVFDATRLRCPVTWTALIVGYAQN 222

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   ++  ++ +M      PD +TF+GLL ACSH GLV+ GR +F  M++ + I P  +H
Sbjct: 223 GRGEESLQVYAEMVHSGCRPDYVTFIGLLFACSHAGLVDAGRAHFKSMQADHGITPGPDH 282

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MVD+LGRAG ++EA  L+   TM+ D  VW+ALL ACRT +  EL E A   + RL 
Sbjct: 283 YACMVDVLGRAGRLDEAMELLDQSTMKLDATVWKALLGACRTHRNAELAERAAEMVWRLD 342

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D   Y++LSN+Y   +RW     +R +MK +G+ K  G SW+  +GV H F   DR H
Sbjct: 343 PTDAVPYIMLSNLYSRERRWSDVARIRTLMKSRGIAKEPGCSWVVASGVTHLFYVEDRGH 402

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    I + +  ++++ ++EGF+  T+  L D + E +E  L HHSE+LA+A+G+L    
Sbjct: 403 PRTDEIYRKVEEMMEKVRAEGFVADTDWALQDEAPEGREKGLAHHSERLAVAFGLLALPA 462

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  +R+ KNLR+C DCH  IKM++++  R II+RD   FH    G+CSCGDYW
Sbjct: 463 GAPVRVFKNLRVCGDCHVAIKMVAKVYGREIILRDSNCFHHMRDGVCSCGDYW 515



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 101/213 (47%), Gaps = 5/213 (2%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEP-DKFTFASVIYGCARLGALNHAYWVHN 65
           V++N+ I    R      AL  F EM +++  P D++TF  ++   A L     A  +H 
Sbjct: 7   VAYNAAISRCSRAGLHQRALALFHEMRAARGLPADEYTFPPILNSAALLRVPAAADALHA 66

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
           L++   +  +  ++ AL+D Y+K  +   A+ +FD + R DV  W ++++G+A  G    
Sbjct: 67  LLLRAGLVAHLHVANALVDAYAKLSRGGAARALFDEMPRRDVVTWTSLLTGLARSGSHDA 126

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLEHYGAM 184
           A  ++  M    V PD       L++C+    +E G+    H  + R  ++P L    ++
Sbjct: 127 ALRVYRDMVASGVEPDEYVVAAALSSCAGSTTLELGQSV--HATAVRLGLEPFLSVGNSL 184

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           V +  + G + EA  +  +  +    V W AL+
Sbjct: 185 VSMYAKTGSLREARKVFDATRLRCP-VTWTALI 216


>gi|357117491|ref|XP_003560501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Brachypodium distachyon]
          Length = 652

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 180/414 (43%), Positives = 256/414 (61%), Gaps = 5/414 (1%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P KD+V+W +M+ G+ +NA   +AL  F  M +  +  D+ +    I  CA+LGA+  A 
Sbjct: 239 PVKDMVAWTAMVTGYAQNAMPMKALEVFDRMTALGIGIDEVSLTGAISACAQLGAVKRAA 298

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           WV  +       +N ++ + L+DMY+KCG I  A +VFD +Q  +V  +++M+ G+A HG
Sbjct: 299 WVQEIAEMNGFGMNVVVGSGLVDMYAKCGLIDEACKVFDGMQEKNVYTYSSMVVGLASHG 358

Query: 122 LAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            A +A A+F  M    +V P+ +TF+G+LTACSH G+V +GR YF  M+ +Y I P  +H
Sbjct: 359 RAREAIALFKDMVRRADVAPNHVTFIGVLTACSHAGMVTDGRYYFAQMKDKYGILPSADH 418

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MVDLLGRAG ++EA  L+ SMT+EP   VW ALL ACR   + E+ +VA  ++ +L 
Sbjct: 419 YTCMVDLLGRAGLVDEALDLVRSMTVEPHGGVWGALLGACRIHGKTEVAKVAAEHLFKLE 478

Query: 241 G---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLE-LAGVIHQFKAGDRS 296
               G+YVLLSN      +WD    VR++M+ + ++K    SW E   G++HQF AGD S
Sbjct: 479 PEGIGNYVLLSNTLAAAGKWDEVSKVRKVMRSRRLKKVPAVSWFEGRDGLVHQFFAGDNS 538

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP  + I K L  L+ + K  G++P    ++ DVS EEKE  L  HSEKLAL +G+L   
Sbjct: 539 HPRTREIKKALLELVAKLKHAGYVPILSSIVYDVSNEEKERLLMGHSEKLALLFGLLTLG 598

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
               IRI KNLRIC DCH +I+++SR     IIVRD +RFH F+ G CSCG +W
Sbjct: 599 SRCTIRIVKNLRICDDCHLFIRLVSRFEPVEIIVRDNMRFHHFKDGECSCGGFW 652



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 76/193 (39%), Gaps = 44/193 (22%)

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           + ++ +  + I   +++  YS+   +  A+EVF      D+  W AM++G A + +   A
Sbjct: 203 VFDEMVVKDVICWTSIVVAYSRSRDMGSAEEVFGQCPVKDMVAWTAMVTGYAQNAMPMKA 262

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSH-------------------------------- 154
             +F +M    +  D ++  G ++AC+                                 
Sbjct: 263 LEVFDRMTALGIGIDEVSLTGAISACAQLGAVKRAAWVQEIAEMNGFGMNVVVGSGLVDM 322

Query: 155 ---CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV- 210
              CGL++E  K FD M+ +      +  Y +MV  L   G   EA  L   M    DV 
Sbjct: 323 YAKCGLIDEACKVFDGMQEK-----NVYTYSSMVVGLASHGRAREAIALFKDMVRRADVA 377

Query: 211 ---VVWRALLSAC 220
              V +  +L+AC
Sbjct: 378 PNHVTFIGVLTAC 390



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 12/178 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           M +K+V +++SM+ G   + R  EA+  F++M+  + V P+  TF  V+  C+  G +  
Sbjct: 339 MQEKNVYTYSSMVVGLASHGRAREAIALFKDMVRRADVAPNHVTFIGVLTACSHAGMVTD 398

Query: 60  A-YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDV----SVWNAMI 114
             Y+   +  +  I  +      ++D+  + G   +  E  D V+   V     VW A++
Sbjct: 399 GRYYFAQMKDKYGILPSADHYTCMVDLLGRAG---LVDEALDLVRSMTVEPHGGVWGALL 455

Query: 115 SGVAIHGLAADASAIFTKMEMFNVLPDSI-TFLGLLTACSHCGLVEEGRKYFDHMRSR 171
               IHG    A        +F + P+ I  ++ L    +  G  +E  K    MRSR
Sbjct: 456 GACRIHGKTEVAKV--AAEHLFKLEPEGIGNYVLLSNTLAAAGKWDEVSKVRKVMRSR 511


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 170/409 (41%), Positives = 244/409 (59%), Gaps = 3/409 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP K+ +SW  M+ G+V     ++AL+ F +M +  V+P  +T+A  I  C  LGAL H 
Sbjct: 394 MPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHG 453

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++   E +     AL+ MY+KCG +  A+ VF  +   D   WNAMIS +  H
Sbjct: 454 RQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQH 513

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M    + PD I+FL +LTAC+H GLV+EG  YF+ M+  + I P  +H
Sbjct: 514 GHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDH 573

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  ++DLLGR+G I EA  LI +M  EP   +W A+LS CRT   +E G  A   + R++
Sbjct: 574 YARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMI 633

Query: 241 ---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y+LLSN Y    RW  A  VR++M+ +GV+K  G SW+E+   IH F  GD  H
Sbjct: 634 PQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKH 693

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PEAQ + + L  +  R +  G++P T+ VL D+   EKE  L+ HSEKLA+ +G+LK  P
Sbjct: 694 PEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPP 753

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSC 406
           G  + + KNLRIC DCH+ +  +S+ + R I+VRD  RFH F+ G CSC
Sbjct: 754 GATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSC 802



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 126/286 (44%), Gaps = 73/286 (25%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           DVV WN+MI G+V++    +A   FR M+S KV  D+FTF SV+  CA  G   H   VH
Sbjct: 263 DVV-WNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVH 321

Query: 65  NLIIEKKIELNFILSA------ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA------ 112
             II  +++ NF+  A      AL+ +YSK GKI +AK +FDT+   DV  WN       
Sbjct: 322 GQII--RLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYI 379

Query: 113 -------------------------MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLG 147
                                    M+SG    GL+ DA  +F +M   +V P   T+ G
Sbjct: 380 DSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAG 439

Query: 148 LLTACSHCGLVEEGRKYFDHM----------------------------RSRYSIQPQLE 179
            + AC   G ++ GR+   H+                            R  + + P L+
Sbjct: 440 AIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLD 499

Query: 180 --HYGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSAC 220
              + AM+  LG+ GH  EA  L   M  E   PD + +  +L+AC
Sbjct: 500 SVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTAC 545



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 107/255 (41%), Gaps = 41/255 (16%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLG--ALNHA 60
           +D V  N+M+  F R +    A+  F  +L S  + PD ++F ++I    ++   A  H 
Sbjct: 123 RDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHC 182

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKC------------------------------- 89
             +H  +++        +S ALI +Y KC                               
Sbjct: 183 TQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGY 242

Query: 90  ---GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFL 146
              G +  A+ VF+ V      VWNAMISG    G+ ADA  +F +M    V  D  TF 
Sbjct: 243 VRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFT 302

Query: 147 GLLTACSHCGLVEEGRKYFDH---MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
            +L+AC++ G    G+        ++  +  +  L    A+V L  + G I  A  +  +
Sbjct: 303 SVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDT 362

Query: 204 MTMEPDVVVWRALLS 218
           M ++ DVV W  +LS
Sbjct: 363 MNLK-DVVSWNTILS 376


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 174/413 (42%), Positives = 242/413 (58%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP K++++   MI G  +N   DE L+ F++M     EP  F FA  +  C+ LGAL + 
Sbjct: 385 MPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENG 444

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  ++    E +  +  A+I MY+KCG ++ A+ VF T+   D+  WN+MI+ +  H
Sbjct: 445 RQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQH 504

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +M    V PD ITFL +LTACSH GLVE+GR YF+ M   Y I P  +H
Sbjct: 505 GHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDH 564

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MVDL  RAG    A  +I SM  +P   VW ALL+ CR    ++LG  A   + +LM
Sbjct: 565 YARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLM 624

Query: 241 ---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y  + RW+    VR++M+ + VRK    SW+E+   +H F   D  H
Sbjct: 625 PQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVH 684

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE  ++ + L  L    K  G++P T+ VL D+  E+KE  L  HSEKLA+ +GI+K  P
Sbjct: 685 PEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPP 744

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              +R+ KN+RIC DCH+  K +S++ RR IIVRDR RFH F+ G CSC DYW
Sbjct: 745 DATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 113/256 (44%), Gaps = 55/256 (21%)

Query: 8   SWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLI 67
           +WN+MI G+V    F EAL   R+M    ++ D  T+ ++I  CA +G+      +H  I
Sbjct: 256 AWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYI 315

Query: 68  IEKKIELN--FILSA--ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA----------- 112
           ++ ++  N  F LS   ALI +Y K  K+  A+++F  +   ++  WNA           
Sbjct: 316 LKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRM 375

Query: 113 --------------------MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC 152
                               MISG+A +G   +   +F +M +    P    F G LTAC
Sbjct: 376 EEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTAC 435

Query: 153 SHCGLVEEGRKYFDHMRSRYSIQPQLEHYG---------AMVDLLGRAGHIEEAYGLITS 203
           S  G +E GR+          +  QL H G         AM+ +  + G +E A  +  +
Sbjct: 436 SVLGALENGRQ----------LHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVT 485

Query: 204 MTMEPDVVVWRALLSA 219
           M    D+V W ++++A
Sbjct: 486 MP-SVDLVSWNSMIAA 500



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 111/272 (40%), Gaps = 53/272 (19%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVI--------------- 48
           +D V +N+MI G+  N     AL  FR M      PD FTF SV+               
Sbjct: 110 RDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQ 169

Query: 49  ---------YGCARLGALNHAYWVHNLIIEKKIELNFILSA------------------- 80
                     GC     LN    V+   +++  EL    SA                   
Sbjct: 170 MHCAVVKTGMGCVSSSVLNALLSVY---VKRASELGIPCSAMVSARKLFDEMPKRDELTW 226

Query: 81  -ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVL 139
             +I  Y +   +  A+EVF+ +  N  + WNAMISG    G   +A  +  KM    + 
Sbjct: 227 TTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQ 286

Query: 140 PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ----LEHYGAMVDLLGRAGHIE 195
            D IT+  +++AC++ G  + G++   ++  +  + P     L    A++ L  +   ++
Sbjct: 287 FDDITYTTIISACANVGSFQMGKQMHAYIL-KNELNPNHSFCLSVSNALITLYCKNNKVD 345

Query: 196 EAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
           EA  +  +M +  +++ W A+LS      R+E
Sbjct: 346 EARKIFYAMPVR-NIITWNAILSGYVNAGRME 376


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 166/411 (40%), Positives = 248/411 (60%), Gaps = 5/411 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD ++WN M+ GF ++  ++EAL  F +M  + V+ + FTF S I   A L  +     +
Sbjct: 510 KDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQI 569

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAK-EVFDTVQRNDVSVWNAMISGVAIHGL 122
           H  +I+        ++ ALI +Y KCG I+ AK + F+  +RN VS WN +I+  + HG 
Sbjct: 570 HATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVS-WNTIITSCSQHGW 628

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F +M+   + P+ +TF+G+L ACSH GLVEEG  YF  M S + I P+ +HY 
Sbjct: 629 GLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYA 688

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            +VD+LGRAG ++ A   +  M +  + +VWR LLSACR  K +E+GE+A   +  L   
Sbjct: 689 CVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPH 748

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           D   YVLLSN Y    +W   ++VR++MK +GVRK  G+SW+E+  V+H F  GDR HP 
Sbjct: 749 DSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPL 808

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           A  I K L  L  R    G++     +  +  +E+K+   + HSEKLA+A+G++   P  
Sbjct: 809 AHQIYKYLADLDDRLAKIGYIQGNYFLFHEKEKEQKDPTAFVHSEKLAVAFGLMSLPPSM 868

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            +R+ KNLR+C+DCH+W+K  S ++ R I++RD  RFH F  G CSCGD+W
Sbjct: 869 PLRVIKNLRVCNDCHTWMKFTSEVMGREIVLRDVYRFHHFNNGNCSCGDFW 919



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 114/217 (52%), Gaps = 2/217 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDVVSW SMI G+V++    EAL  F++M    + PD    AS I  CA + A+     +
Sbjct: 409 KDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQI 468

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H+ +       +  +  AL+++Y++CG+ + A  +F+ ++  D   WN M+SG A  GL 
Sbjct: 469 HSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLY 528

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F KM    V  +  TF+  ++A ++   +++G++    +  +     + E   A
Sbjct: 529 EEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATV-IKTGCTSETEVANA 587

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
           ++ L G+ G IE+A      M+ E + V W  ++++C
Sbjct: 588 LISLYGKCGSIEDAKMQFFEMS-ERNHVSWNTIITSC 623



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 137/273 (50%), Gaps = 11/273 (4%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +VV WN M+  + + +   ++   F +M+++ V P++FT+  ++  C   G +N    +H
Sbjct: 309 NVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIH 368

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
            L I+   E +  +S  LIDMYSK G +  A+ + + ++  DV  W +MI+G   H    
Sbjct: 369 LLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCK 428

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR-SRYSIQPQLEHYGA 183
           +A   F  M++F + PD+I     ++AC+    + +G++    +  S YS    +  + A
Sbjct: 429 EALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSI--WNA 486

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI-VNISRLMGG 242
           +V+L  R G  +EA+ L  ++  + D + W  ++S    F +  L E A+ V I     G
Sbjct: 487 LVNLYARCGRSKEAFSLFEAIEHK-DKITWNGMVSG---FAQSGLYEEALEVFIKMYQAG 542

Query: 243 DYVLLSNMYCYLKRWDTAENVREIMKKKGVRKS 275
              +  N++ ++     + N+ +I + K +  +
Sbjct: 543 ---VKYNVFTFVSSISASANLADIKQGKQIHAT 572



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 121/239 (50%), Gaps = 14/239 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP  D V++N++I    +    + AL  F EM  S   PD  T AS++  CA +G LN  
Sbjct: 204 MPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKG 263

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ +++  +  ++I+  +L+D+Y KCG I  A E+F +  R +V +WN M+      
Sbjct: 264 KQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQI 323

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLE 179
              A +  +F +M    V P+  T+  LL  C++ G +  G +   H+ S +   +  + 
Sbjct: 324 SDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQI--HLLSIKTGFESDMY 381

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS----------ACRTFKRLEL 228
             G ++D+  + G +++A  ++  +  + DVV W ++++          A  TFK ++L
Sbjct: 382 VSGVLIDMYSKYGWLDKARRILEVLEAK-DVVSWTSMIAGYVQHEFCKEALETFKDMQL 439



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 105/216 (48%), Gaps = 2/216 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D VSW +M+ G+ RN   +EA+  + +M  S V P  +  +SV+  C +         V
Sbjct: 106 RDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLV 165

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  + ++      ++  ALI +Y + G + +A+ VF  +   D   +N +IS  A  G  
Sbjct: 166 HAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNG 225

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  IF +M +    PD +T   LL AC+  G + +G++   ++  +  + P     G+
Sbjct: 226 ESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLL-KAGMSPDYIIEGS 284

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++DL  + G I EA  +  S     +VV+W  +L A
Sbjct: 285 LLDLYVKCGVIVEALEIFKSGD-RTNVVLWNLMLVA 319



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 9/167 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +   S N  + GF+ +   ++ L  F   +          FA  +  C   G++ H 
Sbjct: 1   MTRRAAASLNKSLTGFLAHEDPEKLLSLFAAKVRQCRGLGSVDFACALRECR--GSVKH- 57

Query: 61  YW-----VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
            W     +H   I   +  + I    LID+Y+K G +Q A+ VF+ +   D   W AM+S
Sbjct: 58  -WPLVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLS 116

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR 162
           G A +GL  +A  ++ +M    V+P       +L+AC+   L E+GR
Sbjct: 117 GYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGR 163



 Score = 45.8 bits (107), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++ VSWN++I    ++    EAL  F +M    ++P+  TF  V+  C+ +G +   
Sbjct: 608 MSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEG 667

Query: 61  Y-WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN-DVSVWNAMISGVA 118
             +  ++  E  I       A ++D+  + G++  A++  + +  + +  VW  ++S   
Sbjct: 668 LGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACR 727

Query: 119 IH 120
           +H
Sbjct: 728 VH 729


>gi|220061995|gb|ACL79585.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 589

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 173/421 (41%), Positives = 254/421 (60%), Gaps = 16/421 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM------LSSKVEPDKFTFASVIYGCARL 54
           M  +DV +WNS++ G  +    + AL  F  +      L S+ EP++ T  +V+  CA++
Sbjct: 174 MTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAVLSACAQI 233

Query: 55  GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV--WNA 112
           G L    +VH    +  ++ N  +  +LIDMYSKCG +  A +VF +++  D ++  +NA
Sbjct: 234 GLLKDGMYVHEFAKKFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDRTLVSYNA 293

Query: 113 MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY 172
            I   ++HG   DA  +F +M    + PD +T+L +L  C+H GLV++G + F+ MR   
Sbjct: 294 AIQAHSMHGHGGDALRLFDEMPT-RIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMR--- 349

Query: 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA 232
            + P ++HYG +VDLLGRAG + EAY  + SM    D+V+W+ LL A +    +EL E+A
Sbjct: 350 -VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELA 408

Query: 233 IVNISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQ 289
              ++ L   + GDYVLLSN+Y    RW     VR+ M+   VRK  G S+ E+ GV+H+
Sbjct: 409 ANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHK 468

Query: 290 FKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALA 349
           F  GD+ HP  Q I + L  ++ R    G+ P T  VL D+ EEEK+  L +HSEKLA+A
Sbjct: 469 FINGDKEHPRWQEIYRALEDIVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEKLAIA 528

Query: 350 YGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDY 409
           +G++ T PG  +R+ KNLRIC DCH   K+IS+   RVI++RDR RFHRFE G CSC DY
Sbjct: 529 FGLIATPPGETLRVIKNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRDY 588

Query: 410 W 410
           W
Sbjct: 589 W 589



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 89/180 (49%), Gaps = 7/180 (3%)

Query: 39  PDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEV 98
           PD  + +  +   AR    +    +H L++   +  +  L   L+D Y+KCG +  A++V
Sbjct: 111 PDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKV 170

Query: 99  FDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM-EMFNVL-----PDSITFLGLLTAC 152
           FD +   DV+ WN++++G+A       A A+F ++   F  L     P+ +T + +L+AC
Sbjct: 171 FDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAVLSAC 230

Query: 153 SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
           +  GL+++G  Y      ++ +   +    +++D+  + G +  A  +  S+  E   +V
Sbjct: 231 AQIGLLKDG-MYVHEFAKKFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDRTLV 289


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 165/393 (41%), Positives = 241/393 (61%), Gaps = 4/393 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++ VSW++M+ G+V+     EAL  F  M +  V PD      V+  CA+LG L   
Sbjct: 303 MPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQG 362

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH  +    I +   L  AL+DMY+KCG++Q+A EVF  ++  +V  W  MI G+A+H
Sbjct: 363 KWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMH 422

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  ++A  +F++ME   V PD I F+G L AC+H GLV++GR+ FD M  +Y I+P++EH
Sbjct: 423 GRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEH 482

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI---VNIS 237
           YG MVDLL R G + EA  ++  M M+PD ++W AL++ CR  K +EL E  +   + + 
Sbjct: 483 YGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELE 542

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLL N+Y    R  +A  +R +M++KGV K+ G S +E+ GVIHQF  GD SH
Sbjct: 543 PDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSH 602

Query: 298 PEAQAIDKILGSLIQRTK-SEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           P  + I      +  R +  EG++P  + VL+D+ EEEKE  L  HSEK+A+A+ ++ TS
Sbjct: 603 PFIEEILSKWDEIDSRIRLEEGYVPDKKEVLLDIEEEEKENALSRHSEKMAIAFALINTS 662

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVII 389
               IRI KNLR+CHDCH   K+IS++    ++
Sbjct: 663 DDMPIRIVKNLRVCHDCHHVTKLISKVFDLTVV 695



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 74/136 (54%), Gaps = 2/136 (1%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
           LI  Y++ G++  A+ +FD +   +   W+AM++G    G   +A  +F +M+   V PD
Sbjct: 283 LITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPD 342

Query: 142 SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
               +G+L AC+  G++E+G+    ++++  +I+  +    A+VD+  + G ++ A  + 
Sbjct: 343 DTVLVGVLAACAQLGVLEQGKWVHGYLKAN-NIRITVFLGTALVDMYAKCGEMQLAMEVF 401

Query: 202 TSMTMEPDVVVWRALL 217
             M  E +V+ W  ++
Sbjct: 402 KVMK-EKNVLAWTTMI 416



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 18/142 (12%)

Query: 141 DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL 200
           D+ TF  L+TA +  G V + R  FD M +R ++      + AMV+   +AG   EA GL
Sbjct: 276 DASTFNTLITAYARAGRVTDARALFDEMPARNAVS-----WSAMVNGYVQAGDGREALGL 330

Query: 201 ITSMTME---PDVVVWRALLSACRTFKRLELG-------EVAIVNISRLMGGDYVLLSNM 250
              M  +   PD  V   +L+AC     LE G       +   + I+  +G     L +M
Sbjct: 331 FARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLG---TALVDM 387

Query: 251 YCYLKRWDTAENVREIMKKKGV 272
           Y        A  V ++MK+K V
Sbjct: 388 YAKCGEMQLAMEVFKVMKEKNV 409


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 168/411 (40%), Positives = 252/411 (61%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K++VS+N+++ G+ +N + +EA   F E+  + +    FTFAS++ G A +GA+     
Sbjct: 417 EKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQ 476

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  +++   + N  +  ALI MYS+CG I+ A +VF+ ++  +V  W +MI+G A HG 
Sbjct: 477 IHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGF 536

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A  A  +F KM      P+ IT++ +L+ACSH G++ EG+K+F+ M   + I P++EHY 
Sbjct: 537 ATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYA 596

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            MVDLLGR+G + EA   I SM +  D +VWR LL ACR     ELG  A   I      
Sbjct: 597 CMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPD 656

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           D   Y+LLSN++    +W     +R+ MK++ + K  G SW+E+   +H+F  G+ SHP+
Sbjct: 657 DPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQ 716

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           A  I + L  L  + K  G++P T+ VL D+ EE+KE  L+ HSEK+A+A+G++ TS   
Sbjct: 717 AWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSK 776

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI KNLR+C DCH+ IK IS    R I+VRD  RFH  + G+CSC DYW
Sbjct: 777 PIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 827



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 115/225 (51%), Gaps = 14/225 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++++V+W  MI  F +     +A+  F +M  S   PD+FT++SV+  C  LG L   
Sbjct: 209 MPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALG 268

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKC---GKIQMAKEVFDTVQRNDVSVWNAMISGV 117
             +H+ +I   + L+  +  +L+DMY+KC   G +  +++VF+ +  ++V  W A+I+  
Sbjct: 269 KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAY 328

Query: 118 AIHG-LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
              G    +A  +F KM   ++ P+  +F  +L AC +      G + +      Y+++ 
Sbjct: 329 VQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS-----YAVKL 383

Query: 177 QLEHY----GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
            +        +++ +  R+G +E+A      +  E ++V + A++
Sbjct: 384 GIASVNCVGNSLISMYARSGRMEDARKAF-DILFEKNLVSYNAIV 427



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 117/226 (51%), Gaps = 17/226 (7%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D+VSW++M+  F  N+   +A+  F +ML     P+++ FA+VI  C+     N+A WV
Sbjct: 109 RDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNA---NYA-WV 164

Query: 64  HNLII-----EKKIELNFILSAALIDMYSK-CGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
             +I         +E +  +   LIDM+ K  G +  A +VFD +   ++  W  MI+  
Sbjct: 165 GEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRF 224

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQP 176
           A  G A DA  +F  ME+   +PD  T+  +L+AC+  GL+  G++   H R  R  +  
Sbjct: 225 AQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQL--HSRVIRLGLAL 282

Query: 177 QLEHYGAMVDLLGRA---GHIEEAYGLITSMTMEPDVVVWRALLSA 219
            +    ++VD+  +    G ++++  +   M  E +V+ W A+++A
Sbjct: 283 DVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNVMSWTAIITA 327



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFD-EALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           MP+ +V+SW ++I  +V++   D EA+  F +M+S  + P+ F+F+SV+  C  L     
Sbjct: 313 MPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYT 372

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              V++  ++  I     +  +LI MY++ G+++ A++ FD +   ++  +NA++ G A 
Sbjct: 373 GEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAK 432

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQL 178
           +  + +A  +F ++    +   + TF  LL+  +  G + +G +     ++  Y     +
Sbjct: 433 NLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCI 492

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               A++ +  R G+IE A+ +   M  + +V+ W ++++ 
Sbjct: 493 --CNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITG 530



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 95/252 (37%), Gaps = 46/252 (18%)

Query: 20  ARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILS 79
            R   A      M      PD  T++ ++  C R         VH  +++  +EL+ ++ 
Sbjct: 23  GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 82

Query: 80  AALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNV 138
             LI +YSKCG  + A+ +F+ +  + D+  W+AM+S  A + +   A   F  M     
Sbjct: 83  NTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGF 142

Query: 139 LPDSITFLGLLTACSH---------------------------CGLVE----------EG 161
            P+   F  ++ ACS+                           C L++            
Sbjct: 143 YPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSA 202

Query: 162 RKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLS 218
            K FD M  R      L  +  M+    + G   +A  L   M +    PD   + ++LS
Sbjct: 203 YKVFDKMPER-----NLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLS 257

Query: 219 ACRTFKRLELGE 230
           AC     L LG+
Sbjct: 258 ACTELGLLALGK 269



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 2/123 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D++V+SW SMI GF ++     AL  F +ML +  +P++ T+ +V+  C+ +G ++  
Sbjct: 516 MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 575

Query: 61  YWVHN-LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
               N +  E  I       A ++D+  + G +  A E  +++    D  VW  ++    
Sbjct: 576 QKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACR 635

Query: 119 IHG 121
           +HG
Sbjct: 636 VHG 638


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 169/430 (39%), Positives = 254/430 (59%), Gaps = 23/430 (5%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSS------------------KVEPDKFTFA 45
           +DVVSWN++I G V      +A +  REM                      V P+  T  
Sbjct: 440 RDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLM 499

Query: 46  SVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN 105
           +++ GCA L A      +H   +   ++ +  + +AL+DMY+KCG + +++ VFD + + 
Sbjct: 500 TLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKR 559

Query: 106 DVSVWNAMISGVAIHGLAADASAIFTKMEMFN-VLPDSITFLGLLTACSHCGLVEEGRKY 164
           +V  WN +I    +HGL  +A A+F +M M N   P+ +TF+  L ACSH G+V+ G + 
Sbjct: 560 NVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMEL 619

Query: 165 FDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM-EPDVVVWRALLSACRTF 223
           F  M+  + +QP  + +   VD+LGRAG ++EAY +ITSM   E  V  W + L ACR  
Sbjct: 620 FHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLH 679

Query: 224 KRLELGEVAIVNISRLMGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSW 280
           + + LGE+A   + +L   +   YVLL N+Y     W+ +  VR  M+++GV K  G SW
Sbjct: 680 RNVPLGEIAAERLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSW 739

Query: 281 LELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLY 340
           +EL GVIH+F AG+ +HPE+  +   + +L +R +++G+ P T  VL D+ E EK   L 
Sbjct: 740 IELDGVIHRFMAGESAHPESTLVHAHMDALWERMRNQGYTPDTSSVLHDIEESEKAAILR 799

Query: 341 HHSEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFE 400
           +HSEKLA+A+G+L+T PG  IR++KNLR+C+DCH   K ISR++ R I++RD  RFH F 
Sbjct: 800 YHSEKLAIAFGLLRTPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFV 859

Query: 401 GGLCSCGDYW 410
            G CSCGDYW
Sbjct: 860 DGACSCGDYW 869



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 10/225 (4%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P   VV+WN+M+   V++ R  EA+    +M++  V PD  TFAS +  C++L  L+   
Sbjct: 232 PGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGR 291

Query: 62  WVHNLII-EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ--RNDVSVWNAMISGVA 118
            +H  ++ +  +  N  +++AL+DMY+   ++ +A+ VFD V      + +WNAM+ G A
Sbjct: 292 EMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYA 351

Query: 119 IHGLAADASAIFTKMEM-FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR-YSIQP 176
             G+  +A  +F +ME    V+P   T  G+L AC+             ++  R  +  P
Sbjct: 352 QAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNP 411

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP-DVVVWRALLSAC 220
            +++  A++DL  R G +E A  +  +  +EP DVV W  L++ C
Sbjct: 412 FVQN--ALMDLYARLGDMEAARWIFAA--IEPRDVVSWNTLITGC 452



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 116/251 (46%), Gaps = 24/251 (9%)

Query: 9   WNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLI 67
           WN+M+ G+ +    +EAL  F  M   + V P + T A V+  CAR         VH  +
Sbjct: 343 WNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYV 402

Query: 68  IEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADAS 127
           +++ +  N  +  AL+D+Y++ G ++ A+ +F  ++  DV  WN +I+G  + G   DA 
Sbjct: 403 LKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAF 462

Query: 128 AIFTKMEMFN------------------VLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169
            +  +M+                     V+P+++T + LL  C+      +G++   +  
Sbjct: 463 QLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAM 522

Query: 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG 229
            R+++   +    A+VD+  + G +  +  +   +    +V+ W  L+ A   +    LG
Sbjct: 523 -RHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKR-NVITWNVLIMA---YGMHGLG 577

Query: 230 EVAIVNISRLM 240
           + AI    R++
Sbjct: 578 DEAIALFDRMV 588



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 103/255 (40%), Gaps = 47/255 (18%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA------RL 54
           MP +D V++NS+I       R+  AL   R+ML        FT  SV+  C+      RL
Sbjct: 122 MPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAEDLRL 181

Query: 55  GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRND-----VSV 109
           G   HA+ + N  ++      F    AL+ MY++ G +  A+ +F +V   D     V  
Sbjct: 182 GREAHAFALKNGFLDGDERFAF---NALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVT 238

Query: 110 WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK------ 163
           WN M+S +   G   +A  +   M    V PD ITF   L ACS   ++  GR+      
Sbjct: 239 WNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVL 298

Query: 164 ------------------YFDH-----MRSRYSIQP----QLEHYGAMVDLLGRAGHIEE 196
                             Y  H      R  + + P    QL  + AMV    +AG  EE
Sbjct: 299 KDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEE 358

Query: 197 AYGLITSMTMEPDVV 211
           A  L   M  E  VV
Sbjct: 359 ALELFARMEAEAGVV 373



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 85/176 (48%), Gaps = 7/176 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFF-REMLSSKVEPDKFTFASVIYGCARLGALNH 59
           +P ++V++WN +I  +  +   DEA+  F R ++S++ +P++ TF + +  C+  G ++ 
Sbjct: 556 LPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDR 615

Query: 60  AYWV-HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRND--VSVWNAMISG 116
              + H++     ++    L A  +D+  + G++  A  +  +++  +  VS W++ +  
Sbjct: 616 GMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGA 675

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSIT-FLGLLTACSHCGLVEEGRKYFDHMRSR 171
             +H              +F + PD  + ++ L    S  GL E+  +  + MR R
Sbjct: 676 CRLHRNVPLGE--IAAERLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQR 729


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 170/413 (41%), Positives = 246/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP K+ +SW  M+ G+V     ++AL+ F +M S  V+P  +T+A  I  C  LGAL H 
Sbjct: 390 MPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHG 449

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I++   E +     ALI MY++CG ++ A  +F  +   D   WNAMIS +  H
Sbjct: 450 KQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQH 509

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M    + PD I+FL +LTAC+H GLV+EG +YF+ M+  + I P  +H
Sbjct: 510 GHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDH 569

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  ++DLLGRAG I EA  LI +M  EP   +W A+LS CRT   +ELG  A   + ++ 
Sbjct: 570 YTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMT 629

Query: 241 G---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y+LLSN Y     W  A  VR++M+ +GV+K  G SW+E    +H F  GD  H
Sbjct: 630 PQHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKH 689

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PEA  + K L  +  + +  G++P T++VL D+   +KE  L+ HSE+LA+ +G+L   P
Sbjct: 690 PEAHEVYKFLEMVGAKMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLNLPP 749

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  + + KNLRIC DCH+ I  +S+ + R I+VRD  RFH F+ G CSCG+YW
Sbjct: 750 GATVTVLKNLRICDDCHAAIMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 116/252 (46%), Gaps = 42/252 (16%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           DVV WN+MI G+V +    EA   FR M+  +V  D+FTF SV+  CA +G   H   VH
Sbjct: 259 DVV-WNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVH 317

Query: 65  NLIIEKKIELNFILSA------ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA------ 112
             II  +++ NF+  A      AL+  YSKCG I +A+ +FD +   DV  WN       
Sbjct: 318 GQII--RLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYV 375

Query: 113 -------------------------MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLG 147
                                    M+SG    G A DA  +F KM   NV P   T+ G
Sbjct: 376 ESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAG 435

Query: 148 LLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME 207
            + AC   G ++ G++   H+  +   +       A++ +  R G ++EA+ +   M   
Sbjct: 436 AIAACGELGALKHGKQLHGHI-VQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMP-N 493

Query: 208 PDVVVWRALLSA 219
            D V W A++SA
Sbjct: 494 IDSVSWNAMISA 505



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 111/255 (43%), Gaps = 41/255 (16%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLG--ALNHA 60
           +D V  N++I  + R +    A+  FR +L+S  + PD ++F +++     L   ++ H 
Sbjct: 119 RDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRHC 178

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKC------------------------------- 89
             +H  +++        +  AL+ +Y KC                               
Sbjct: 179 AQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGY 238

Query: 90  ---GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFL 146
              G +  A+ VF+ V      VWNAMISG    G+A +A  +F +M +  V  D  TF 
Sbjct: 239 VRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFT 298

Query: 147 GLLTACSHCGLVEEGRKYFDH---MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
            +L+AC++ GL   G+        ++  +  +  L    A+V    + G+I  A  +  +
Sbjct: 299 SVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDN 358

Query: 204 MTMEPDVVVWRALLS 218
           MT++ DVV W  +LS
Sbjct: 359 MTLK-DVVSWNTILS 372


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 167/410 (40%), Positives = 249/410 (60%), Gaps = 16/410 (3%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD VSWNS++ GF ++  F+EAL  F +M  + +E + FTF S +   A +  +     +
Sbjct: 603 KDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQI 662

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H +I +   +    +S ALI +Y+KCG I            +D+S WN+MI+G + HG  
Sbjct: 663 HGMIRKTGYDSETEVSNALITLYAKCGTI------------DDIS-WNSMITGYSQHGCG 709

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F  M+  +VLP+ +TF+G+L+ACSH GLV+EG  YF  M   +++ P+ EHY  
Sbjct: 710 FEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYAC 769

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD 243
           +VDLLGR+G +  A   +  M ++PD +VWR LLSAC   K +++GE A  ++  L   D
Sbjct: 770 VVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKD 829

Query: 244 ---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
              YVL+SNMY    +WD  +  R++MK +GV+K  G+SW+E+   +H F AGD++HP A
Sbjct: 830 SATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNHPRA 889

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
             I + L  L  R    G++P    +L D    +K+     HSE+LA+A+G+L  +  T 
Sbjct: 890 DMIYEYLRGLDFRAAENGYVPRCNSLLSDAEIRQKDPTEIIHSERLAIAFGLLSLTSSTP 949

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + + KNLR+C DCH+WIK +S++  RVIIVRD  RFH F+ G CSC DYW
Sbjct: 950 LYVFKNLRVCEDCHNWIKHVSKITDRVIIVRDSYRFHHFKVGSCSCKDYW 999



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 113/241 (46%), Gaps = 22/241 (9%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + + DVVSW +MI G+ ++ +F EAL  F+EM    ++ D   FAS I  CA + AL+  
Sbjct: 499 LKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQG 558

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H          +  +  AL+ +Y++CGK++ A   FD +   D   WN+++SG A  
Sbjct: 559 RQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQS 618

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  IF +M    +  +S TF   ++A ++   V  G++    +R +     + E 
Sbjct: 619 GYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIR-KTGYDSETEV 677

Query: 181 YGAMVDLLGRAGHIE------------------EAYGLITSMT---MEPDVVVWRALLSA 219
             A++ L  + G I+                  EA  L   M    + P+ V +  +LSA
Sbjct: 678 SNALITLYAKCGTIDDISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSA 737

Query: 220 C 220
           C
Sbjct: 738 C 738



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 105/200 (52%), Gaps = 4/200 (2%)

Query: 21  RFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSA 80
             +++ + F +M    + P++FT+ S++  C  LGA +    +H  +++   + N  +S+
Sbjct: 418 NLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSS 477

Query: 81  ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP 140
            LIDMY+K GK+  A ++F  ++ NDV  W AMI+G   H    +A  +F +M+   +  
Sbjct: 478 VLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKS 537

Query: 141 DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS-IQPQLEHYGAMVDLLGRAGHIEEAYG 199
           D+I F   ++AC+    +++GR+   H +S  S     L    A+V L  R G + EAY 
Sbjct: 538 DNIGFASAISACAGIQALDQGRQI--HAQSCLSGYSDDLSIGNALVSLYARCGKVREAYA 595

Query: 200 LITSMTMEPDVVVWRALLSA 219
               +  + D V W +L+S 
Sbjct: 596 AFDQIYAK-DNVSWNSLVSG 614



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 115/246 (46%), Gaps = 34/246 (13%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D VSW +MI G  +N   +EA+  F ++              V+  C ++        +
Sbjct: 228 RDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFEFGKQL 273

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H L++++       +  AL+ +YS+ G +  A+++F  + + D   +N++ISG+A  G  
Sbjct: 274 HGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYI 333

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A A+F KM +    PD +T   LL+AC+  G +  G+++  +   +  +   +   G+
Sbjct: 334 NRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYA-IKAGMTSDIVVEGS 392

Query: 184 MVDL----------------LGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFK 224
           ++DL                 G+  ++ +++ + T M +E   P+   + ++L  C T  
Sbjct: 393 LLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLG 452

Query: 225 RLELGE 230
             +LGE
Sbjct: 453 ATDLGE 458



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 103/219 (47%), Gaps = 17/219 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D VS+NS+I G  +    + AL  F++M     +PD  T AS++  CA +GAL + 
Sbjct: 312 MSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNG 371

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H+  I+  +  + ++  +L+D+Y KC  I+ A E F    + D              
Sbjct: 372 KQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDN------------- 418

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                +  IFT+M++  ++P+  T+  +L  C+  G  + G +    +  +   Q  +  
Sbjct: 419 --LNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVL-KTGFQFNVYV 475

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              ++D+  + G ++ A  +   +  E DVV W A+++ 
Sbjct: 476 SSVLIDMYAKHGKLDHALKIFRRLK-ENDVVSWTAMIAG 513



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 112/255 (43%), Gaps = 30/255 (11%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA-RLGALNH 59
           MP + +  WN +   F+           FR ML+  VE D+  FA V+ GC+    +   
Sbjct: 123 MPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRGCSGNAVSFRF 182

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H   I    E +  +   LID+Y K G +  AK+VF+ ++  D   W AMISG++ 
Sbjct: 183 VEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQ 242

Query: 120 HGLAADASAIF--------TKMEMFN--------VLPD---SITFL--GLLTACSHCGLV 158
           +G   +A  +F        TK+E F         VL     S T++   L+T  S  G +
Sbjct: 243 NGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNL 302

Query: 159 EEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRA 215
               + F  M  R  +      Y +++  L + G+I  A  L   M ++   PD V   +
Sbjct: 303 SSAEQIFHCMSQRDRVS-----YNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVAS 357

Query: 216 LLSACRTFKRLELGE 230
           LLSAC +   L  G+
Sbjct: 358 LLSACASVGALPNGK 372


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 170/411 (41%), Positives = 251/411 (61%), Gaps = 5/411 (1%)

Query: 4    KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
            KD +SWNS+I GF ++   +EAL  F +M  +  E + FTF   +   A +  +     +
Sbjct: 638  KDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQI 697

Query: 64   HNLIIEKKIELNFILSAALIDMYSKCGKIQMA-KEVFDTVQRNDVSVWNAMISGVAIHGL 122
            H +II+   +    +S  LI +Y+KCG I  A ++ F+  ++N++S WNAM++G + HG 
Sbjct: 698  HAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEIS-WNAMLTGYSQHGH 756

Query: 123  AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
               A ++F  M+   VLP+ +TF+G+L+ACSH GLV+EG KYF  MR  + + P+ EHY 
Sbjct: 757  GFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYA 816

Query: 183  AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
             +VDLLGR+G +  A   +  M ++PD +V R LLSAC   K +++GE A  ++  L   
Sbjct: 817  CVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPK 876

Query: 243  D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
            D   YVLLSNMY    +W   +  R++MK +GV+K  G+SW+E+   +H F AGD+ HP 
Sbjct: 877  DSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQKHPN 936

Query: 300  AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
               I + L  L +     G++P T  +L D    +K      HSEKLA+A+G+L  S  T
Sbjct: 937  VDKIYEYLRDLNELAAENGYIPQTNSLLNDAERRQKGPTQIIHSEKLAIAFGLLSLSSST 996

Query: 360  EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             I + KNLR+C DCH+WIK +S++  RVI+VRD  RFH F+GG+CSC DYW
Sbjct: 997  PIHVFKNLRVCGDCHNWIKYVSKISDRVIVVRDSYRFHHFKGGICSCKDYW 1047



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 115/217 (52%), Gaps = 4/217 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++VV WN M+  +      +E+ + F +M    +EP++FT+ S++  C+ L A++    +
Sbjct: 436 ENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQI 495

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +++   + N  +S+ LIDMY+K GK+  A ++F  ++  DV  W AMI+G A H   
Sbjct: 496 HTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKF 555

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLEHYG 182
           A+A  +F +M+   +  D+I F   ++AC+    + +G++ +     S YS    L    
Sbjct: 556 AEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYS--DDLSVGN 613

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A+V L  R G + +AY     +    D + W +L+S 
Sbjct: 614 ALVSLYARCGKVRDAYFAFDKI-FSKDNISWNSLISG 649



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 112/219 (51%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D VS+NS+I G  +    D+AL  F++M    ++PD  T AS++  C+ +GAL   
Sbjct: 332 MLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVG 391

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H+  I+  +  + IL  AL+D+Y KC  I+ A E F + +  +V +WN M+    + 
Sbjct: 392 KQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLL 451

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               ++  IFT+M+M  + P+  T+  +L  CS    V+ G +    +  +   Q  +  
Sbjct: 452 DNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVL-KTGFQFNVYV 510

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              ++D+  + G ++ A  +   +  E DVV W A+++ 
Sbjct: 511 SSVLIDMYAKLGKLDHALKIFRRLK-EKDVVSWTAMIAG 548



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 154/312 (49%), Gaps = 43/312 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  +D VSW +M+ G  ++   +EA+  F +M +S V P  + F+SV+  C ++      
Sbjct: 231 LQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVG 290

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT-VQRNDVSVWNAMISGVAI 119
             +H L++++   L   +  AL+ +YS+ G    A++VF+  +QR++VS +N++ISG++ 
Sbjct: 291 EQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVS-YNSLISGLSQ 349

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQL 178
            G +  A  +F KM +  + PD +T   LL+ACS  G +  G+++  + +++  S    L
Sbjct: 350 QGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIIL 409

Query: 179 EHYGAMVDLLGRAGHIEE---------------------AYGLI----------TSMTM- 206
           E  GA++DL  +   I+                      AYGL+          T M M 
Sbjct: 410 E--GALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQME 467

Query: 207 --EPDVVVWRALLSACRTFKRLELGEVAIVNISR--LMGGDYV--LLSNMYCYLKRWDTA 260
             EP+   + ++L  C + + ++LGE     + +       YV  +L +MY  L + D A
Sbjct: 468 GIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHA 527

Query: 261 ENVREIMKKKGV 272
             +   +K+K V
Sbjct: 528 LKIFRRLKEKDV 539



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 115/258 (44%), Gaps = 43/258 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + +KDVVSW +MI G+ ++ +F EAL  F+EM    +  D   FAS I  CA + ALN  
Sbjct: 534 LKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQG 593

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H          +  +  AL+ +Y++CGK++ A   FD +   D   WN++ISG A  
Sbjct: 594 QQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQS 653

Query: 121 GLAADASAIFTKMEMFNVLPDSITF--------------LG------------------- 147
           G   +A ++F++M       +S TF              LG                   
Sbjct: 654 GHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVS 713

Query: 148 --LLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
             L+T  + CG +++  + F  M  +  I      + AM+    + GH  +A  L   M 
Sbjct: 714 NVLITLYAKCGNIDDAERQFFEMPEKNEIS-----WNAMLTGYSQHGHGFKALSLFEDMK 768

Query: 206 ---MEPDVVVWRALLSAC 220
              + P+ V +  +LSAC
Sbjct: 769 QLGVLPNHVTFVGVLSAC 786



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 116/264 (43%), Gaps = 34/264 (12%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP + +  WN ++  FV        L  FR ML  KV+PD+ T+A V+ GC       H 
Sbjct: 129 MPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHC 188

Query: 61  YW-VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H   I    E +  +   LID+Y K G +  AK+VFD +Q+ D   W AM+SG++ 
Sbjct: 189 VEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQ 248

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYF-------------- 165
            G   +A  +F +M    V P    F  +L+AC+     + G +                
Sbjct: 249 SGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYV 308

Query: 166 -DHMRSRYS---------------IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME-- 207
            + + + YS               +Q     Y +++  L + G+ ++A  L   M ++  
Sbjct: 309 CNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCL 368

Query: 208 -PDVVVWRALLSACRTFKRLELGE 230
            PD V   +LLSAC +   L +G+
Sbjct: 369 KPDCVTVASLLSACSSVGALLVGK 392



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 94/245 (38%), Gaps = 44/245 (17%)

Query: 25  ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84
            + F   M    V  +  T+  ++ GC   G  +  + +H  I++       +L   L+D
Sbjct: 52  GINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMD 111

Query: 85  MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSIT 144
           +Y   G +  A  VFD +    +S WN ++       +A     +F +M    V PD  T
Sbjct: 112 LYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERT 171

Query: 145 FLGLLTACS------HC------------------------------GLVEEGRKYFDHM 168
           + G+L  C       HC                              G +   +K FD +
Sbjct: 172 YAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGL 231

Query: 169 RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKR 225
           + R S+      + AM+  L ++G  EEA  L   M      P   ++ ++LSAC   + 
Sbjct: 232 QKRDSVS-----WVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEF 286

Query: 226 LELGE 230
            ++GE
Sbjct: 287 YKVGE 291



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 63/128 (49%), Gaps = 14/128 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K+ +SWN+M+ G+ ++    +AL  F +M    V P+  TF  V+  C+ +G ++  
Sbjct: 736 MPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEG 795

Query: 61  --YW-----VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNA 112
             Y+     VH L+ + +        A ++D+  + G +  A+   + +  + D  V   
Sbjct: 796 IKYFQSMREVHGLVPKPE------HYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRT 849

Query: 113 MISGVAIH 120
           ++S   +H
Sbjct: 850 LLSACIVH 857


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 167/414 (40%), Positives = 249/414 (60%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++DV++W +MI G+ +N + DEA+  FR M+ S  EP+  T A+V+  CA L  L + 
Sbjct: 390 MNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYG 449

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAI 119
             +H   I    E +  +S A+I +Y++ G + +A+ VFD +  R +   W +MI  +A 
Sbjct: 450 KQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQ 509

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HGL   A  +F +M    V PD +T++G+ +AC+H G +++G++Y++ M + + I P++ 
Sbjct: 510 HGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMS 569

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HY  MVDLL RAG + EA+  I  M + PD VVW +LL+ACR  K  +L E+A   +++I
Sbjct: 570 HYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSI 629

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G Y  L+N+Y    RW+ A  + ++ K K V+K  G SW  +   +H F A D  
Sbjct: 630 DPDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVL 689

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+  AI K    + +  K  GF+P    VL DV +E KE  L  HSEKLA+A+G++ T 
Sbjct: 690 HPQRDAICKKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTP 749

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             T +RI KNLR+C+DCH+ IK IS+++ R IIVRD  RFH F  G CSC DYW
Sbjct: 750 EKTTLRIMKNLRVCNDCHTAIKFISKVVDREIIVRDATRFHHFRDGYCSCKDYW 803



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 125/269 (46%), Gaps = 40/269 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           M ++ +VSWN++I G+ +N   D AL+FF  ML+ S +EPD+FT  SV+  CA L  L  
Sbjct: 255 MEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKM 314

Query: 60  AYWVHNLIIEKKI---------------------------------ELNFILSAALIDMY 86
              +H+ I+   +                                 +LN I   AL++ Y
Sbjct: 315 GKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGY 374

Query: 87  SKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFL 146
            K G  + A+EVFD +   DV  W AMI G   +G   +A  +F  M      P+S T  
Sbjct: 375 VKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLA 434

Query: 147 GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ-LEHYGAMVDLLGRAGHIEEAYGLITSMT 205
            +L+AC+    +  G++   H R+  S+Q Q +    A++ +  R+G +  A  +   + 
Sbjct: 435 AVLSACASLAYLGYGKQI--HCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQIC 492

Query: 206 MEPDVVVWRALLSACRTFKRLELGEVAIV 234
              + V W +++ A     +  LGE AIV
Sbjct: 493 WRKETVTWTSMIVA---LAQHGLGEQAIV 518



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 121/273 (44%), Gaps = 37/273 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D VSW  M+ G  R  RF +A++ F +M+   + P +F   +V+  CA   A    
Sbjct: 123 MPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIG 182

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ +I+  +     ++ +++ MY KCG  + A+ VF+ ++    S WNAM+S     
Sbjct: 183 RKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQ 242

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A ++F  ME  ++    +++  ++   +  GL +   K+F  M            
Sbjct: 243 GRMDLALSMFENMEERSI----VSWNAIIAGYNQNGLDDMALKFFSRM------------ 286

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
                               +T+ +MEPD     ++LSAC   + L++G+     I R  
Sbjct: 287 --------------------LTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTG 326

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGV 272
           M     +++ +     +  + E  R IM K  V
Sbjct: 327 MPYSSQIMNALISTYAKSGSVETARRIMDKAVV 359



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 74/195 (37%), Gaps = 44/195 (22%)

Query: 81  ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP 140
           +L+ MY+K G++  A+ VF  +   D   W  M+ G+   G   DA   F  M    + P
Sbjct: 102 SLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAP 161

Query: 141 DSITFLGLLTACS-----------------------------------HCGLVEEGRKYF 165
                  +L++C+                                    CG  E  R  F
Sbjct: 162 SQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVF 221

Query: 166 DHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKR 225
           + M+ R         + AMV L    G ++ A  +  +M  E  +V W A+++    + +
Sbjct: 222 ERMKVRSE-----SSWNAMVSLYTHQGRMDLALSMFENME-ERSIVSWNAIIAG---YNQ 272

Query: 226 LELGEVAIVNISRLM 240
             L ++A+   SR++
Sbjct: 273 NGLDDMALKFFSRML 287


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 166/410 (40%), Positives = 250/410 (60%), Gaps = 5/410 (1%)

Query: 5    DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
            D ++WN+++ GF ++   +EALR F  M    ++ + FTF S +   +    +     VH
Sbjct: 639  DNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVH 698

Query: 65   NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF-DTVQRNDVSVWNAMISGVAIHGLA 123
             +I +   +    +  A+I MY+KCG I  AK+ F +   +N+VS WNAMI+  + HG  
Sbjct: 699  AVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVS-WNAMINAYSKHGFG 757

Query: 124  ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            ++A   F +M   NV P+ +T +G+L+ACSH GLV++G +YF+ M + Y + P+ EHY  
Sbjct: 758  SEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVC 817

Query: 184  MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD 243
            +VD+L RAG +  A   I  M +EPD +VWR LLSAC   K +E+GE A  ++  L   D
Sbjct: 818  VVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPED 877

Query: 244  ---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
               YVLLSN+Y   ++WD  +  R+ MK+KGV+K  G+SW+E+   IH F  GD++HP A
Sbjct: 878  SATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLA 937

Query: 301  QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
              I +    L +R    G++     +L ++ +E+K+  ++ HSEKLA+++G+L       
Sbjct: 938  DEIHEYFKDLTKRASEIGYVQDCFSLLSELQQEQKDPTIFIHSEKLAISFGLLSLPATMP 997

Query: 361  IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            I + KNLR+C+DCH WIK +S++  R IIVRD  RFH FEGG CSC DYW
Sbjct: 998  INVMKNLRVCNDCHDWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1047



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 112/234 (47%), Gaps = 14/234 (5%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++VV WN M+  +        + R FR+M   ++ P+++T+ S++  C RLG L     +
Sbjct: 436 ENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQI 495

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H+ II+   +LN  + + LIDMY+K GK+  A ++       DV  W  MI+G   +   
Sbjct: 496 HSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFD 555

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS-IQPQLEHYG 182
             A   F +M    +  D +     ++AC+    ++EG++   H ++  S     L    
Sbjct: 556 DKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI--HAQACVSGFSSDLPFQN 613

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS----------ACRTFKRL 226
           A+V L  + G+IEEAY L    T   D + W AL+S          A R F R+
Sbjct: 614 ALVTLYSKCGNIEEAY-LAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARM 666



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 104/216 (48%), Gaps = 2/216 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDVVSW +MI G+ +    D+AL  FR+ML   +  D+    + +  CA L AL     +
Sbjct: 537 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI 596

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H          +     AL+ +YSKCG I+ A   F+  +  D   WNA++SG    G  
Sbjct: 597 HAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNN 656

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F +M    +  ++ TF   + A S    +++G++    + ++     + E   A
Sbjct: 657 EEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQ-VHAVITKTGYDSETEVCNA 715

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++ +  + G I +A      ++M+ + V W A+++A
Sbjct: 716 IISMYAKCGSISDAKKQFLELSMKNE-VSWNAMINA 750



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 119/239 (49%), Gaps = 14/239 (5%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD  SW +MI G  +N    EA+R F +M    + P  + F+SV+  C ++ +L     +
Sbjct: 234 KDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQL 293

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H L+++     +  +  AL+ +Y   G +  A+ +F  + + D   +N +I+G++  G  
Sbjct: 294 HGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYG 353

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYG 182
             A  +F +M++  + PDS T   L+ ACS  G +  G++   +  +  ++   ++E  G
Sbjct: 354 EKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIE--G 411

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA----------CRTFKRLELGEV 231
           A+++L  +   IE A        +E +VV+W  +L A           R F+++++ E+
Sbjct: 412 ALLNLYAKCSDIETALNYFLETEVE-NVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEI 469



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 105/219 (47%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D V++N++I G  +    ++A+  F+ M    +EPD  T AS++  C+  G L   
Sbjct: 332 MSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSG 391

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H    +     N  +  AL+++Y+KC  I+ A   F   +  +V +WN M+    + 
Sbjct: 392 QQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLL 451

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               ++  IF +M++  ++P+  T+  +L  C   G +E G +    +  + S Q     
Sbjct: 452 DDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQI-IKTSFQLNAYV 510

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              ++D+  + G ++ A+ ++     + DVV W  +++ 
Sbjct: 511 CSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAG 548



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 118/266 (44%), Gaps = 38/266 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG--ALN 58
           MP++ + +WN MI      +   +    F  M++  V P++ TF+ V+  C R G  A +
Sbjct: 129 MPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEAC-RGGSVAFD 187

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H  II + +  + I+   LID+YS+ G +  A+ VFD +   D S W AMISG++
Sbjct: 188 VVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLS 247

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK--------------- 163
            +    +A  +F  M +  ++P    F  +L+AC     +E G +               
Sbjct: 248 KNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTY 307

Query: 164 --------YF--------DHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT-- 205
                   YF        +H+ S  S Q     Y  +++ L + G+ E+A  L   M   
Sbjct: 308 VCNALVSLYFHLGSLISAEHIFSNMS-QRDAVTYNTLINGLSQCGYGEKAMELFKRMQLD 366

Query: 206 -MEPDVVVWRALLSACRTFKRLELGE 230
            +EPD     +L+ AC +   L  G+
Sbjct: 367 GLEPDSNTLASLVVACSSDGTLFSGQ 392



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 45/234 (19%)

Query: 37  VEPDKFTFASVIYGCARL-GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMA 95
           + P+  T   ++ GC +  G+L+    +H+ I++   + N  LS  L+D Y   G +  A
Sbjct: 63  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGA 122

Query: 96  KEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC--- 152
            +VFD +    +  WN MI  +A   L+     +F +M   NV P+  TF G+L AC   
Sbjct: 123 LKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGG 182

Query: 153 ---------------------------------SHCGLVEEGRKYFDHMRSRYSIQPQLE 179
                                            S  G V+  R+ FD +  +        
Sbjct: 183 SVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLK-----DHS 237

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSM---TMEPDVVVWRALLSACRTFKRLELGE 230
            + AM+  L +     EA  L   M    + P    + ++LSAC+  + LE+GE
Sbjct: 238 SWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGE 291



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY-W 62
           K+ VSWN+MI  + ++    EAL  F +M+ S V P+  T   V+  C+ +G ++    +
Sbjct: 739 KNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEY 798

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE-VFDTVQRNDVSVWNAMISGVAIH 120
             ++  E  +         ++DM ++ G +  AK+ + +     D  VW  ++S   +H
Sbjct: 799 FESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVH 857


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 169/410 (41%), Positives = 252/410 (61%), Gaps = 4/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K+ VSWN++I GF R A  +  L  F EM  +      FT++S+    AR+GAL    WV
Sbjct: 122 KNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWV 181

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I+   +L   +   ++ MY+K G +  A++VFD + + D+  WN M++ +A +GL 
Sbjct: 182 HAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLG 241

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A A F ++    +  + ITFL +LTACSH GLV+EG+ YFD M+  Y++QP+++HY +
Sbjct: 242 KEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKD-YNVQPEIDHYVS 300

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD 243
            VDLLGRAG ++EA   +  M MEP   VW ALL ACR  K  ++G+ A  ++  L   D
Sbjct: 301 FVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDD 360

Query: 244 Y---VLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
               VLL N+Y    +W+ A  VR++MK  GV+K    SW+++   +H F A D +HP++
Sbjct: 361 TGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKS 420

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
             I ++   +  R K  G++P T  VL+ ++E+E+E  L +HSEK+ALA+ ++    G  
Sbjct: 421 GDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGAS 480

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IRI KN+RIC DCHS  K +S++ +R I+VRD  RFH F  G CSCGDYW
Sbjct: 481 IRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 530



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 120/241 (49%), Gaps = 9/241 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVVSW  +I G+ +N    EA+    +ML ++  P+ FTF S++      G  +  
Sbjct: 18  MPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIG 77

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD-TVQRNDVSVWNAMISGVAI 119
             +H L ++   + +  + +AL+DMY++C ++ MA  VFD  V +N+VS WNA+I+G A 
Sbjct: 78  EQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVS-WNALIAGFAR 136

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
                     F +M+         T+  + +A +  G +E+GR    H+    S Q    
Sbjct: 137 KADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIK--SGQKLTA 194

Query: 180 HYG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
             G  M+ +  ++G + +A  +   M  + D+V W  +L+A   +    LG+ A+ +   
Sbjct: 195 FVGNTMLGMYAKSGSMVDARKVFDRMD-KRDLVTWNTMLTALAQYG---LGKEAVAHFEE 250

Query: 239 L 239
           +
Sbjct: 251 I 251



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 9/184 (4%)

Query: 85  MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSIT 144
           MY KCG +  A+ VFD +   DV  W  +I+G A + + A+A  +   M      P+  T
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 145 FLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
           F  LL A   CG    G +    +  +Y+    +    A++D+  R   ++ A  ++   
Sbjct: 61  FTSLLKATGACGGCSIGEQ-MHALAVKYNWDEDVYVGSALLDMYARCEQMDMAI-MVFDR 118

Query: 205 TMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL----MGGDYVLLSNMYCYLKRWDTA 260
            +  + V W AL++    F R   GE  ++  + +     G  +   S+M+    R    
Sbjct: 119 LVSKNEVSWNALIAG---FARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGAL 175

Query: 261 ENVR 264
           E  R
Sbjct: 176 EQGR 179



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 1/121 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D+V+WN+M+    +     EA+  F E+    ++ ++ TF SV+  C+  G +   
Sbjct: 220 MDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEG 279

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAK-EVFDTVQRNDVSVWNAMISGVAI 119
               +++ +  ++       + +D+  + G ++ A   VF        +VW A++    +
Sbjct: 280 KHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRM 339

Query: 120 H 120
           H
Sbjct: 340 H 340


>gi|297805646|ref|XP_002870707.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316543|gb|EFH46966.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 517

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 179/411 (43%), Positives = 250/411 (60%), Gaps = 4/411 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K++VSWN+MI   ++N   +E L +F       ++PD+ TF +V+  C  +G +  +  +
Sbjct: 107 KNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGI 166

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H LI+      N  ++ AL+D+Y+K G+++ +  VF  +   D   W AM++  A HG  
Sbjct: 167 HGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYG 226

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            DA   F  M  + + PD +TF  LL ACSH GLVEEGR YF+ M  RY I+P+L+HY  
Sbjct: 227 RDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSC 286

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM--- 240
           MVDL+GR+G +++AYGLI  M MEP   VW ALL ACR +K  +LG  A   +  L    
Sbjct: 287 MVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRD 346

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
           G +Y++LSN+Y     W  A  +R +MK+KG+ ++ G S++E    IH+F  GD SHPE+
Sbjct: 347 GRNYIMLSNIYSASGLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIHKFVVGDWSHPES 406

Query: 301 QAIDKILGSLIQRTKSE-GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           + I K L  + ++ KSE GF   TE VL DV E+ KE  +  HSEK+A+A+G+L  SP  
Sbjct: 407 EKIQKKLKEIRKKMKSELGFKSRTEFVLHDVDEDVKEEMINQHSEKIAMAFGLLVISPME 466

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            I I KNLRIC DCH   K IS + +R II+RD  RFH F  G CSC DYW
Sbjct: 467 PIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLEGSCSCRDYW 517



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 107/229 (46%), Gaps = 14/229 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKV--EPDKFTFASVIYGCARLGALN 58
           MP++D+V+WNS+I G+       +       M+ S+V   P++ TF S+I  C   G   
Sbjct: 1   MPERDLVAWNSLISGYAGRGYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKE 60

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H L+++  +     +  AL+++Y K G +  + ++F+ +   ++  WN MI    
Sbjct: 61  EGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHL 120

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVE-----EGRKYFDHMRSRYS 173
            +GLA +  A F       + PD  TFL +L  C   G+V       G   F    +   
Sbjct: 121 QNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTC 180

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRT 222
           I        A++DL  + G +E++  +   +T  PD + W A+L+A  T
Sbjct: 181 ITT------ALLDLYAKLGRLEDSSTVFLEIT-SPDSMAWTAMLAAYAT 222


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 176/409 (43%), Positives = 247/409 (60%), Gaps = 5/409 (1%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D+V WNS+I GF ++     A+  F  M  S    ++ T  SV+  C  +  L     VH
Sbjct: 236 DLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLEVGRQVH 295

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             ++  K + + IL  AL+DMY KCG +  A  +F  +   DV  W+ MISG+A +G + 
Sbjct: 296 AHVL--KYDRDLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWSTMISGLAQNGRSV 353

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           +A  +F  M+     P++IT +G+L ACSH GLVE+G  YF  M   + IQP+ EH   M
Sbjct: 354 EALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMDKLFGIQPEREHCNCM 413

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDY 244
           VDLLGRAG ++EA   I  M  EPD V+WR LL ACR  K   L   A   I +L   D 
Sbjct: 414 VDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGACRMHKNATLASYAATEILKLEPEDQ 473

Query: 245 ---VLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
              +LLSN+Y  L++W  AE   + M+ +GV+K  G+SW+EL  ++H F AG+ SHP + 
Sbjct: 474 GARILLSNIYADLRQWSNAEKSWKTMRDQGVKKEPGRSWIELGKLVHVFIAGELSHPCSD 533

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
            I + L  LI+R K  G++P TE VL D+  E+KE  L +HSEKLA+A+G + +  G  +
Sbjct: 534 RIVQELNRLIRRAKDLGYVPQTEFVLQDLGTEQKEDLLKYHSEKLAIAFGTMNSMEGKPV 593

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           RI KNLRIC DCH++ K++S+   + II+RD +RFH F+ G+CSCGDYW
Sbjct: 594 RIMKNLRICGDCHAFAKLVSKTEGKAIIIRDPVRFHHFQHGVCSCGDYW 642



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 111/220 (50%), Gaps = 8/220 (3%)

Query: 1   MPDKDVVSWNSMIGGFVR-NARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           MP ++VVSW +++        R  EALRF  EM    V  + +TF+SV+  C   G L  
Sbjct: 133 MPQRNVVSWTTVVAALANAPGRKKEALRFLVEMRRDGVAANSYTFSSVLGACGTPGVLAA 192

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  II+  ++ +  + ++LID Y K G +   + VFD +   D+ VWN++I+G A 
Sbjct: 193 ---MHADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGRGVFDEMVTCDLVVWNSIIAGFAQ 249

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            G    A  +F +M+    L +  T   +L AC+   ++E GR+   H+         L 
Sbjct: 250 SGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLEVGRQVHAHV---LKYDRDLI 306

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            + A++D+  + G + +A  L + M  + DV+ W  ++S 
Sbjct: 307 LHNALLDMYCKCGCLLDADALFSRMH-DRDVISWSTMISG 345



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 6/144 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D+DV+SW++MI G  +N R  EAL+ F  M +    P+  T   V++ C+  G +   
Sbjct: 331 MHDRDVISWSTMISGLAQNGRSVEALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDG 390

Query: 61  YWVHNLIIEK--KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGV 117
            W +   ++K   I+        ++D+  + GK+  A +    ++   D  +W  ++   
Sbjct: 391 -WHYFRSMDKLFGIQPEREHCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGAC 449

Query: 118 AIHGLAADASAIFTKMEMFNVLPD 141
            +H  A  AS  +   E+  + P+
Sbjct: 450 RMHKNATLAS--YAATEILKLEPE 471



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/208 (20%), Positives = 90/208 (43%), Gaps = 12/208 (5%)

Query: 19  NARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLI------IEKKI 72
           +  F  AL    ++ ++ V  D  +   +I  C R G +     +H  +           
Sbjct: 44  DGPFTAALALLPDIAAAGVRADPVSLCRLIKLCVRHGTVGDGRAIHRHVSLCAHGGGGAT 103

Query: 73  ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA-IHGLAADASAIFT 131
             +  +S +L+ MY+K G +  A E+F  + + +V  W  +++ +A   G   +A     
Sbjct: 104 HGSLFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLV 163

Query: 132 KMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRA 191
           +M    V  +S TF  +L AC   G++     + D +  +  +   +    +++D   + 
Sbjct: 164 EMRRDGVAANSYTFSSVLGACGTPGVLAA--MHADII--KVGLDSDVFVRSSLIDAYMKL 219

Query: 192 GHIEEAYGLITSMTMEPDVVVWRALLSA 219
           G ++   G+   M +  D+VVW ++++ 
Sbjct: 220 GDLDSGRGVFDEM-VTCDLVVWNSIIAG 246


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 171/414 (41%), Positives = 249/414 (60%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA-LNH 59
           +P KD+V+W++M+ G  +    ++A+  F +++   V+P+++TF+SVI  C+   A + H
Sbjct: 465 IPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEH 524

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H   ++        +S+AL+ MYSK G I+ A++VF   +  D+  WN+MI+G   
Sbjct: 525 GKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQ 584

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG A  A  +F  M+   +  D +TF+G+LTAC+H GLVEEG KYF+ M   Y I  + E
Sbjct: 585 HGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXE 644

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY  MVDL  RAG  ++A  +I  M       +WR LL+ACR  + LELG++A   +  L
Sbjct: 645 HYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSL 704

Query: 240 MGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
              D   YVLLSN++     W+   +VR++M ++ V+K  G SW+E+   I  F AGD S
Sbjct: 705 QPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVS 764

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP +  +   L  L  + K  G+ P T  V  DV EE KE  L  HSE+LA+AYG++   
Sbjct: 765 HPFSDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALP 824

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PG  I+I KNLRIC DCH+ I++IS +  R +IVRD  RFH F+GG+CSCG YW
Sbjct: 825 PGAPIQIEKNLRICGDCHNVIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 102/228 (44%), Gaps = 23/228 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K+VVSW S++ G+ RN   DE +    +M    V P+ FTFA+V+   A    +   
Sbjct: 165 MGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGG 224

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH +I++   E    +  ALI MY K   +  A+ VFD++   D   WN MI G A  
Sbjct: 225 VQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAI 284

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACS-----------HCGLVEEGRKYFDHMR 169
           G   +   +F +M +  V      F   L  CS           HCG+V+ G ++   +R
Sbjct: 285 GFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIR 344

Query: 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           +            A++    +   ++EA+ L +      +VV W A++
Sbjct: 345 T------------ALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMI 380



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 106/217 (48%), Gaps = 9/217 (4%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYG--CARLGALNHAYW 62
           +VV+W +MIGGFV+N    +A+  F +M    V P+ FT+++V+ G   + L  L     
Sbjct: 372 NVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQL----- 426

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            H  II+   E    ++ AL+D Y K G +  +  VF ++   D+  W+AM++G+A    
Sbjct: 427 -HAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRD 485

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           +  A  +F ++    V P+  TF  ++ ACS      E  K       +      L    
Sbjct: 486 SEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSS 545

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A++ +  + G+IE A  + T    E D+V W ++++ 
Sbjct: 546 ALLTMYSKKGNIESAEKVFTRQE-ERDIVSWNSMITG 581



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 99/217 (45%), Gaps = 7/217 (3%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D V+WN MIGG+     + E  + F  M  + V+  +  F + +  C++   LN    +
Sbjct: 269 RDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQL 328

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR-NDVSVWNAMISGVAIHGL 122
           H  +++   E    +  AL+  YSKC  +  A ++F      ++V  W AMI G   +  
Sbjct: 329 HCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNN 388

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
              A  +F +M    V P+  T+  +L       L    + +   +++ Y   P +    
Sbjct: 389 NKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLL---SQLHAQIIKAYYEKVPSVA--T 443

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A++D   + G++ E+  +  S+  + D+V W A+L+ 
Sbjct: 444 ALLDAYVKTGNVVESARVFYSIPAK-DIVAWSAMLTG 479



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 77/160 (48%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P KD+  +N ++  F RN    EAL  F+++ SS +  D  T +  +  C  L       
Sbjct: 65  PLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGR 124

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            VH   ++     +  +  +L+DMY K    +  + +FD +   +V  W +++SG A +G
Sbjct: 125 QVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNG 184

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG 161
           L  +   +  +M+M  V P+  TF  +L A +   ++E G
Sbjct: 185 LNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGG 224


>gi|242047426|ref|XP_002461459.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
 gi|241924836|gb|EER97980.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
          Length = 568

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 170/371 (45%), Positives = 241/371 (64%), Gaps = 4/371 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++++VSWNSM+ GF  N R +E L  FREML     PD FT  SV+   A +GAL     
Sbjct: 183 ERNLVSWNSMLNGFAANGRPNEVLTIFREMLDVNFMPDGFTVVSVLTASAEIGALALGRR 242

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAIHG 121
           VH  + +  +  N  +  ALID+Y+KCG ++ A+ VF+ +  R  V  W ++I G+A++G
Sbjct: 243 VHVYLTKVGLVENSHVGNALIDLYAKCGGVEDARRVFEEMGARRTVVSWTSLIVGLAVNG 302

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              +A  +F  ME   ++P  IT +G+L ACSHCGLV++G  YF+ M+  Y+I P++EH 
Sbjct: 303 FGKEALELFGIMEREKLVPTEITMVGVLYACSHCGLVDDGFMYFNRMKEEYNIAPRIEHL 362

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISR 238
           G MVDLLGRAG ++EAY  I +M +EP+ VVWR LL AC   K+LELGE A   +V +  
Sbjct: 363 GCMVDLLGRAGKVKEAYDYILTMPLEPNAVVWRTLLGACAMHKKLELGEAAWARLVELDP 422

Query: 239 LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
              GDYVLLSN+Y  + RW     +R+ M K GVRK+ G+S +EL   +++F  GDRSHP
Sbjct: 423 GHSGDYVLLSNLYAAVGRWADVHVLRKTMVKDGVRKNPGRSLVELRNSVYEFVMGDRSHP 482

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           E++ I ++L  +    + EG++P T  VL D+ EEEKE  L +HSE+LA+A+ +LK+ PG
Sbjct: 483 ESEQIYQMLAEVADSLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPG 542

Query: 359 TEIRISKNLRI 369
           T IRI KNLR+
Sbjct: 543 TPIRIVKNLRL 553



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 12/258 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +PD D  S N+++     ++R   AL      L+    PD  T+  ++  CARL +L H 
Sbjct: 81  LPDPDPFSLNTVLRIAASSSRPSLALALHARRLAP---PDTHTYPPLLQACARLLSLRHG 137

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV---QRNDVSVWNAMISGV 117
             +H    +  +     +  +L+ +Y  CG  + A  VFD +   +RN VS WN+M++G 
Sbjct: 138 ERIHAEAAKNGLATLVFVKNSLVHLYGACGLFESAHRVFDEIPVGERNLVS-WNSMLNGF 196

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           A +G   +   IF +M   N +PD  T + +LTA +  G +  GR+   ++     ++  
Sbjct: 197 AANGRPNEVLTIFREMLDVNFMPDGFTVVSVLTASAEIGALALGRRVHVYLTKVGLVENS 256

Query: 178 LEHYG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS--ACRTFKRLELGEVAIV 234
             H G A++DL  + G +E+A  +   M     VV W +L+   A   F +  L    I+
Sbjct: 257 --HVGNALIDLYAKCGGVEDARRVFEEMGARRTVVSWTSLIVGLAVNGFGKEALELFGIM 314

Query: 235 NISRLMGGDYVLLSNMYC 252
              +L+  +  ++  +Y 
Sbjct: 315 EREKLVPTEITMVGVLYA 332


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 171/413 (41%), Positives = 244/413 (59%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D VSW ++I  +    + +EA+  F+ M      P+      ++  C  LGA    
Sbjct: 511 MLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIG 570

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H + I+  ++   I++ ALI MY KCG    ++ +FD ++  D+  WN +I+G A H
Sbjct: 571 QQIHTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYAQH 629

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  ++  ME   VLP+ +TF+GLL ACSH GLV+EG K+F  M   Y + P  EH
Sbjct: 630 GLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEH 689

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  MVDLLGR G ++ A   I  M +EPD V+W ALL AC+  K  E+G+ A   + R+ 
Sbjct: 690 YACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIE 749

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G+YV+LSN+Y  L  W     VR+IMK++GV K  G SW ++   +H F  GD+ H
Sbjct: 750 PSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQH 809

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            + + I   L  L    K+ G++P TE VL D+ EE+KE +L +HSEKLA+AY +L T  
Sbjct: 810 EQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPK 869

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  I+I KNLRIC DCH++IK +S + +R I +RD  RFH F  G CSC D+W
Sbjct: 870 GMPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 107/220 (48%), Gaps = 6/220 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++ +SW  MI G+ +N R +EAL   +E+  S + P   +  S+ + C+ + AL   
Sbjct: 379 MPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETG 438

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+L ++   + N     ALI MY KC  ++ A++VF  +   D+  WN+ ++ +  +
Sbjct: 439 TQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQN 498

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI--QPQL 178
            L  +A   F  M    +  D +++  +++A +H     E    F  M   + +   P L
Sbjct: 499 DLLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPIL 554

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
                +   LG +   ++ + +   + M+ +++V  AL+S
Sbjct: 555 TILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALIS 594



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 120/262 (45%), Gaps = 40/262 (15%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++++VSW  MI G+ R     +A   F +M    + PD+  FAS +     LG L+  
Sbjct: 184 MPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVL 243

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSK-CGKIQMAKEVFDT-VQRNDVSVWNAMISGVA 118
             +  L ++   E + ++  A++++YS+    +  A + F++ ++RN+ + W+ MI+ ++
Sbjct: 244 ESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYT-WSTMIAALS 302

Query: 119 IHGLAADA----------------SAIFTKME----------MFNVLPDSI--TFLGLLT 150
            HG   DA                +A+ T +           +F  +P+ I  ++  L+T
Sbjct: 303 -HGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALIT 361

Query: 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM---TME 207
                G+V E ++ FD M  R +I      +  M+    + G  EEA GL+  +    M 
Sbjct: 362 GYMQNGMVNEAKELFDKMPFRNTIS-----WAGMIAGYAQNGRSEEALGLLQELHRSGML 416

Query: 208 PDVVVWRALLSACRTFKRLELG 229
           P +    ++  AC     LE G
Sbjct: 417 PSLSSLTSIFFACSNIVALETG 438



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 99/223 (44%), Gaps = 20/223 (8%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+++WNSMI  +  N   D A    R++  +    +  T A ++ G  RLG +  A
Sbjct: 60  MPRRDIIAWNSMISAYCHNGMPDAA----RDLYDAISGGNMRTGAILLSGYGRLGRVLEA 115

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V + ++E+    N +   A+I  Y + G I MA+ +FD +   DVS WN+M++G    
Sbjct: 116 RRVFDGMLER----NTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHS 171

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD-----HMRSRYSIQ 175
               DA  +F KM   N++  ++   G        G +E   K +D     H       Q
Sbjct: 172 LQMVDARNLFEKMPERNLVSWTVMISGY-------GRIENHGKAWDIFCKMHREGLLPDQ 224

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
                  + V  LG    +E    L      E DVV+  A+L+
Sbjct: 225 SNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILN 267



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 11/156 (7%)

Query: 73  ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTK 132
           EL     +A I    + G++  A+EVFD + R D+  WN+MIS    +G+   A  ++  
Sbjct: 31  ELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDA 90

Query: 133 MEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAG 192
           +   N+   +I    LL+     G V E R+ FD M  R ++      + AM+    + G
Sbjct: 91  ISGGNMRTGAI----LLSGYGRLGRVLEARRVFDGMLERNTVA-----WNAMISCYVQNG 141

Query: 193 HIEEAYGLITSMTMEPDVVVWRALLSA-CRTFKRLE 227
            I  A  L  +M    DV  W ++L+  C + + ++
Sbjct: 142 DITMARRLFDAMPSR-DVSSWNSMLTGYCHSLQMVD 176


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 171/413 (41%), Positives = 244/413 (59%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D VSW ++I  +    + +EA+  F+ M      P+      ++  C  LGA    
Sbjct: 511 MLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIG 570

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H + I+  ++   I++ ALI MY KCG    ++ +FD ++  D+  WN +I+G A H
Sbjct: 571 QQIHTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYAQH 629

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  ++  ME   VLP+ +TF+GLL ACSH GLV+EG K+F  M   Y + P  EH
Sbjct: 630 GLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEH 689

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  MVDLLGR G ++ A   I  M +EPD V+W ALL AC+  K  E+G+ A   + R+ 
Sbjct: 690 YACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIE 749

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G+YV+LSN+Y  L  W     VR+IMK++GV K  G SW ++   +H F  GD+ H
Sbjct: 750 PSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQH 809

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            + + I   L  L    K+ G++P TE VL D+ EE+KE +L +HSEKLA+AY +L T  
Sbjct: 810 EQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPK 869

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  I+I KNLRIC DCH++IK +S + +R I +RD  RFH F  G CSC D+W
Sbjct: 870 GMPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 107/220 (48%), Gaps = 6/220 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++ +SW  MI G+ +N R +EAL   +E+  S + P   +  S+ + C+ + AL   
Sbjct: 379 MPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETG 438

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+L ++   + N     ALI MY KC  ++ A++VF  +   D+  WN+ ++ +  +
Sbjct: 439 TQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQN 498

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI--QPQL 178
            L  +A   F  M    +  D +++  +++A +H     E    F  M   + +   P L
Sbjct: 499 DLLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPIL 554

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
                +   LG +   ++ + +   + M+ +++V  AL+S
Sbjct: 555 TILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALIS 594



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 120/262 (45%), Gaps = 40/262 (15%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++++VSW  MI G+ R     +A   F +M    + PD+  FAS +     LG L+  
Sbjct: 184 MPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVL 243

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSK-CGKIQMAKEVFDT-VQRNDVSVWNAMISGVA 118
             +  L ++   E + ++  A++++YS+    +  A + F++ ++RN+ + W+ MI+ ++
Sbjct: 244 ESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYT-WSTMIAALS 302

Query: 119 IHGLAADA----------------SAIFTKME----------MFNVLPDSI--TFLGLLT 150
            HG   DA                +A+ T +           +F  +P+ I  ++  L+T
Sbjct: 303 -HGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALIT 361

Query: 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM---TME 207
                G+V E ++ FD M  R +I      +  M+    + G  EEA GL+  +    M 
Sbjct: 362 GYMQNGMVNEAKELFDKMPFRNTIS-----WAGMIAGYAQNGRSEEALGLLQELHRSGML 416

Query: 208 PDVVVWRALLSACRTFKRLELG 229
           P +    ++  AC     LE G
Sbjct: 417 PSLSSLTSIFFACSNIVALETG 438



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 99/223 (44%), Gaps = 20/223 (8%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+++WNSMI  +  N   D A    R++  +    +  T A ++ G  RLG +  A
Sbjct: 60  MPRRDIIAWNSMISAYCHNGMPDAA----RDLYDAISGGNMRTGAILLSGYGRLGRVLEA 115

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V + ++E+    N +   A+I  Y + G I MA+ +FD +   DVS WN+M++G    
Sbjct: 116 RRVFDGMLER----NTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHS 171

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD-----HMRSRYSIQ 175
               DA  +F KM   N++  ++   G        G +E   K +D     H       Q
Sbjct: 172 LQMVDARNLFEKMPERNLVSWTVMISGY-------GRIENHGKAWDIFCKMHREGLLPDQ 224

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
                  + V  LG    +E    L      E DVV+  A+L+
Sbjct: 225 SNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILN 267



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 11/156 (7%)

Query: 73  ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTK 132
           EL     +A I    + G++  A+EVFD + R D+  WN+MIS    +G+   A  ++  
Sbjct: 31  ELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDA 90

Query: 133 MEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAG 192
           +   N+   +I    LL+     G V E R+ FD M  R ++      + AM+    + G
Sbjct: 91  ISGGNMRTGAI----LLSGYGRLGRVLEARRVFDGMLERNTVA-----WNAMISCYVQNG 141

Query: 193 HIEEAYGLITSMTMEPDVVVWRALLSA-CRTFKRLE 227
            I  A  L  +M    DV  W ++L+  C + + ++
Sbjct: 142 DITMARRLFDAMPSR-DVSSWNSMLTGYCHSLQMVD 176


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 174/413 (42%), Positives = 240/413 (58%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D VSW +MI G+ ++    EALR F +M       ++ +F+S +  CA + AL   
Sbjct: 369 MPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELG 428

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++   E    +  AL+ MY KCG I+ A ++F  +   D+  WN MI+G + H
Sbjct: 429 KQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRH 488

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A   F  M+   + PD  T + +L+ACSH GLV++GR+YF  M   Y + P  +H
Sbjct: 489 GFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQH 548

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  MVDLLGRAG +E+A+ L+ +M  EPD  +W  LL A R     EL E A   I  + 
Sbjct: 549 YACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAME 608

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    RW     +R  M+ KGV+K  G SW+E+    H F  GD  H
Sbjct: 609 PENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFH 668

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE   I   L  L  R K  G++  T +VL DV EEEKE  + +HSE+LA+AYGI++ S 
Sbjct: 669 PEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSS 728

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH+ IK ++R+  R+II+RD  RFH F+ G CSCGDYW
Sbjct: 729 GRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 115/261 (44%), Gaps = 45/261 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K+ VSWN+++  +V+N++ +EA   F+          +  +A V + C   G +   
Sbjct: 183 MPEKNDVSWNALLSAYVQNSKMEEACMLFK---------SRENWALVSWNCLLGGFVKKK 233

Query: 61  YWVHNLIIEKKIELNFILS-AALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             V        + +  ++S   +I  Y++ GKI  A+++FD     DV  W AM+SG   
Sbjct: 234 KIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQ 293

Query: 120 HGLAADASAIFTKM-------------------------EMFNVLP--DSITFLGLLTAC 152
           + +  +A  +F KM                         E+F+V+P  +  T+  ++T  
Sbjct: 294 NRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGY 353

Query: 153 SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP---D 209
           + CG + E +  FD M  R  +      + AM+    ++GH  EA  L   M  E    +
Sbjct: 354 AQCGKISEAKNLFDKMPKRDPVS-----WAAMIAGYSQSGHSFEALRLFVQMEREGGRLN 408

Query: 210 VVVWRALLSACRTFKRLELGE 230
              + + LS C     LELG+
Sbjct: 409 RSSFSSALSTCADVVALELGK 429



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 124/261 (47%), Gaps = 38/261 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVVSWN++I G+ ++ + DEA + F E   S V+ D FT+ +++ G  +   +  A
Sbjct: 245 MNVRDVVSWNTIITGYAQSGKIDEARQLFDE---SPVQ-DVFTWTAMVSGYIQNRMVEEA 300

Query: 61  YWVHNLIIEK-KIELNFILSA--------------------------ALIDMYSKCGKIQ 93
             + + + E+ ++  N +L+                            +I  Y++CGKI 
Sbjct: 301 RELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKIS 360

Query: 94  MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
            AK +FD + + D   W AMI+G +  G + +A  +F +ME      +  +F   L+ C+
Sbjct: 361 EAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCA 420

Query: 154 HCGLVEEGRKYFDHM-RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
               +E G++    + +  Y     + +  A++ +  + G IEEA  L   M  + D+V 
Sbjct: 421 DVVALELGKQLHGRLVKGGYETGCFVGN--ALLLMYCKCGSIEEANDLFKEMAGK-DIVS 477

Query: 213 WRALLSACRTFKRLELGEVAI 233
           W  +++    + R   GEVA+
Sbjct: 478 WNTMIAG---YSRHGFGEVAL 495



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 115/272 (42%), Gaps = 62/272 (22%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D+VSWN MI G+VRN    +A    RE+     E D  ++ +++ G A+ G ++ A
Sbjct: 121 MPERDLVSWNVMIKGYVRNRNLGKA----RELFEIMPERDVCSWNTMLSGYAQNGCVDDA 176

Query: 61  YWVHNLIIEKK-IELNFILSA--------------------------ALIDMYSKCGKIQ 93
             V + + EK  +  N +LSA                           L+  + K  KI 
Sbjct: 177 RSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIV 236

Query: 94  MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
            A++ FD++   DV  WN +I+G A  G   +A  +F +    + + D  T+  +++   
Sbjct: 237 EARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDE----SPVQDVFTWTAMVSGYI 292

Query: 154 HCGLVEEGRKYFDHMRSR------------------------YSIQP--QLEHYGAMVDL 187
              +VEE R+ FD M  R                        + + P   +  +  M+  
Sbjct: 293 QNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITG 352

Query: 188 LGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             + G I EA  L   M  + D V W A+++ 
Sbjct: 353 YAQCGKISEAKNLFDKMP-KRDPVSWAAMIAG 383



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 106/221 (47%), Gaps = 22/221 (9%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP    VS+N MI G++RN  F+ A + F EM     E D  ++  +I G  R   L  A
Sbjct: 90  MPRWSSVSYNGMISGYLRNGEFELARKLFDEM----PERDLVSWNVMIKGYVRNRNLGKA 145

Query: 61  YWVHNLIIEKKI-ELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVA 118
             +  ++ E+ +   N +LS      Y++ G +  A+ VFD + ++NDVS WNA++S   
Sbjct: 146 RELFEIMPERDVCSWNTMLSG-----YAQNGCVDDARSVFDRMPEKNDVS-WNALLSAYV 199

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            +    +A  +F   E + +    +++  LL        + E R++FD M  R  +    
Sbjct: 200 QNSKMEEACMLFKSRENWAL----VSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVS--- 252

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +  ++    ++G I+EA  L     ++ DV  W A++S 
Sbjct: 253 --WNTIITGYAQSGKIDEARQLFDESPVQ-DVFTWTAMVSG 290


>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Brachypodium distachyon]
          Length = 654

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 167/416 (40%), Positives = 256/416 (61%), Gaps = 7/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE--PDKFTFASVIYGCARLGALN 58
           MP+++VVSW++MIG + +N R  +A+  F++M++S  +  P+  T  SV+  CA + AL+
Sbjct: 240 MPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNSITIVSVLNACAGVNALS 299

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGV 117
           H   +H  I+ +  +    +  AL+ MY +CG +++ + +F  +  R DV  WN++ISG 
Sbjct: 300 HGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIFKWIGHRRDVVSWNSLISGY 359

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
            +HG   +A  +F +M      P  ITF+ +L ACSH GLV EG+  F+ M   Y + P+
Sbjct: 360 GMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSHAGLVNEGKMLFESM-VEYGVTPR 418

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IV 234
            EHY  MVDLLGRAG ++EA  LI SM +EP   VW ALL ACR    +E  E+A   + 
Sbjct: 419 AEHYACMVDLLGRAGQLDEAMELIRSMHIEPSPQVWGALLGACRIHGHVEYAEIACSHLF 478

Query: 235 NISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294
           ++     G+YVLL+++Y   K  +    ++E++++  + K  G SW+E+   +H F + D
Sbjct: 479 DLEPRNAGNYVLLADIYARAKLHNQVGVLKELLEEHALEKVTGCSWIEVKKKLHSFTSVD 538

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
             +P  + +  ++G  + + K++G++P T +VL D+  EEKE  L  HSEKLA+A+G++ 
Sbjct: 539 NKNPPVEQLQALIGEFVAQMKNQGYVPDTGIVLYDIEGEEKERILIGHSEKLAVAFGLIN 598

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T  G  IRI+KNLR+C DCHS  K IS+   R I+VRD  RFH F  G+CSCGDYW
Sbjct: 599 TCSGEVIRITKNLRLCEDCHSVTKFISKFTEREIVVRDVNRFHHFRDGVCSCGDYW 654



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 10/225 (4%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P K++  WN+++         DEAL    +M    V  D +++   +  C  + A +HA 
Sbjct: 135 PVKNIFVWNALLKALALADHGDEALARLADMGRLGVPVDSYSYTHGLKACIAVSA-SHAP 193

Query: 62  W------VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
                  VH   I +   L+  ++  LID Y+K G ++ A+ VF  +   +V  W+AMI 
Sbjct: 194 ASARVREVHAHAIRRGYALHTHVATTLIDCYAKLGIVRYAESVFAAMPERNVVSWSAMIG 253

Query: 116 GVAIHGLAADASAIFTKMEM--FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
             A +   ADA  +F  M     +++P+SIT + +L AC+    +  G+    ++  R  
Sbjct: 254 CYAKNERPADAIELFKDMMASDADLVPNSITIVSVLNACAGVNALSHGKLLHAYILRR-G 312

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
               +    A++ +  R G +E    +   +    DVV W +L+S
Sbjct: 313 FDSLVSVLNALMAMYMRCGCLEVGRHIFKWIGHRRDVVSWNSLIS 357



 Score = 46.2 bits (108), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 12/178 (6%)

Query: 78  LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFN 137
           LS  LI+ Y+  G +  A++VFD     ++ VWNA++  +A+     +A A    M    
Sbjct: 110 LSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALADHGDEALARLADMGRLG 169

Query: 138 VLPDSITFLGLLTAC-----SHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGRA 191
           V  DS ++   L AC     SH       R+   H +R  Y++   +     ++D   + 
Sbjct: 170 VPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVA--TTLIDCYAKL 227

Query: 192 GHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSN 249
           G +  A  +  +M  E +VV W A++     + + E    AI     +M  D  L+ N
Sbjct: 228 GIVRYAESVFAAMP-ERNVVSWSAMIG---CYAKNERPADAIELFKDMMASDADLVPN 281


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 177/411 (43%), Positives = 249/411 (60%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D + VSWN+++ GF ++   +EAL  F EM ++++   + T++SV+  CA   ++ HA  
Sbjct: 408 DANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQ 467

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  I +     + ++  +LID Y+KCG I+ A +VF  +   D+  WNA+ISG A+HG 
Sbjct: 468 IHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQ 527

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           AADA  +F +M   NV  + ITF+ LL+ C   GLV  G   FD MR  + I+P +EHY 
Sbjct: 528 AADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPSMEHYT 587

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            +V LLGRAG + +A   I  +   P  +VWRALLS+C   K + LG  +   I  +   
Sbjct: 588 CIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQ 647

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           D   YVLLSNMY      D    +R+ M+  GVRK  G SW+E+ G IH F  G   HP+
Sbjct: 648 DETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPD 707

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
            + I+ +L  L  +T  EG++P   +VL DV +E+K   L+ HSE+LALAYG++ T PG 
Sbjct: 708 MRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMTPPGH 767

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI KNLR C DCH+   +IS++++R IIVRD  RFH FE G CSCGDYW
Sbjct: 768 PIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 818



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 115/220 (52%), Gaps = 4/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  DV+  + MI  + ++ + ++A   F  ++ S V P++++ +SV+  C  +  L+  
Sbjct: 305 IPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFG 364

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +HN  I+   E +  +  AL+D Y+KC  +  + ++F +++  +   WN ++ G +  
Sbjct: 365 KQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQS 424

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTAC-SHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           GL  +A ++F +M+   +    +T+  +L AC S   +   G+ +    +S ++    + 
Sbjct: 425 GLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIG 484

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +  +++D   + G+I +A  +   + ME D++ W A++S 
Sbjct: 485 N--SLIDTYAKCGYIRDALKVFQHL-MERDIISWNAIISG 521



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 104/230 (45%), Gaps = 24/230 (10%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD V W +M+  +  N   + A R  +            + + +   CAR G       +
Sbjct: 226 KDAVVWTAMVSCYSENDCPENAFRCAQ------------SCSLLAISCARQG-------I 266

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   I+   +    +  AL+DMY+KCG I+ A+  F+ +  +DV + + MIS  A     
Sbjct: 267 HGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQN 326

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  +F ++   +VLP+  +   +L AC++   ++ G++  +H   +   +  L    A
Sbjct: 327 EQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHA-IKIGHESDLFVGNA 385

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI 233
           ++D   +   ++ +  + +S+  + + V W  ++     F +  LGE A+
Sbjct: 386 LMDFYAKCNDMDSSLKIFSSLR-DANEVSWNTIVVG---FSQSGLGEEAL 431



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 106/249 (42%), Gaps = 24/249 (9%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++++VS+ +++    +   F+ A   FR +     E ++F   +++     + A   A
Sbjct: 122 MPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLA 181

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+   +   + N  + + LID YS C  +  A+ VF+ + R D  VW AM+S  + +
Sbjct: 182 GGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSEN 241

Query: 121 GLAADASAIFTKMEMFNV--------------LPDSITFLG--LLTACSHCGLVEEGRKY 164
               +A        +  +              L D+   +G  LL   + CG +++ R  
Sbjct: 242 DCPENAFRCAQSCSLLAISCARQGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLA 301

Query: 165 FDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM---TMEPDVVVWRALLSACR 221
           F+ +     I         M+    ++   E+A+ L   +   ++ P+     ++L AC 
Sbjct: 302 FEMIPYDDVILLSF-----MISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACT 356

Query: 222 TFKRLELGE 230
              +L+ G+
Sbjct: 357 NMVQLDFGK 365


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 177/415 (42%), Positives = 250/415 (60%), Gaps = 6/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD VSW++MI GF  N  F++A  FFRE+    + P++ +   V+  CA+ GA    
Sbjct: 229 MPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFG 288

Query: 61  YWVHNLIIEKKIELNFI-LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             +H  + EK   L  I ++ ALID YSKCG + MA+ VFD + R     W AMI+G+A+
Sbjct: 289 RILHGFV-EKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAM 347

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +A  +F +ME  N+ PDSITF+ +L ACSH GLV+ G  YF  M + Y I+P +E
Sbjct: 348 HGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIE 407

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HYG MVDL GRAG +++AY  +  M + P+ +VWR LL AC     L L       +S L
Sbjct: 408 HYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSEL 467

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                GD+VLLSN+Y    +W     +R  M  + ++K+ G S +E+  +I+ F AG++ 
Sbjct: 468 DPENSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQ 527

Query: 297 HPEAQAIDKILGSLIQRTKSE-GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           +  A    + L  ++ R + E G++P    VL D+  EEKE ++  HSEKLA+A+G+ K 
Sbjct: 528 NDIAVEAHQKLREIMSRLRIEGGYVPEVGSVLHDIEVEEKEDSVSQHSEKLAVAFGMAKL 587

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             G  IR+ KNLRIC DCH+ +K+IS++    I+VRDR RFH F  G CSC DYW
Sbjct: 588 PRGRAIRVVKNLRICRDCHTVMKLISKVYEVEIVVRDRSRFHSFTHGSCSCRDYW 642



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 13/233 (5%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE-PDKFTFASVIYGCARLGALNHAY 61
           + DV  +N++I G   +     AL+ F EM    V  PD F+FA ++   A   AL +  
Sbjct: 67  NPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGL 126

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H L +   ++ +  +   LI MY++C  +  A++VFD +   ++  WNA+++      
Sbjct: 127 QLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCE 186

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              DA  +F  M + N+   +I   G   A    G ++  R+ F  M  +  +      +
Sbjct: 187 GVKDAEQVFRCMPIRNLTSWNIMLAGYTKA----GELQLAREVFMKMPLKDDVS-----W 237

Query: 182 GAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGEV 231
             M+      G+  +A+     +    M P+ V    +LSAC      E G +
Sbjct: 238 STMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRI 290



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 116/261 (44%), Gaps = 22/261 (8%)

Query: 26  LRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLI-IEKKIELNFILSAALID 84
           L F R++    +EP+   + +++  C R   +  A  V   + I      N +L+     
Sbjct: 157 LVFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAG---- 212

Query: 85  MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSIT 144
            Y+K G++Q+A+EVF  +   D   W+ MI G A +G   DA A F ++    + P+ ++
Sbjct: 213 -YTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVS 271

Query: 145 FLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
             G+L+AC+  G  E GR     +     +Q  +    A++D   + G+++ A  +  +M
Sbjct: 272 LTGVLSACAQAGAFEFGRILHGFVEKSGFLQI-ISVNNALIDTYSKCGNLDMARLVFDNM 330

Query: 205 TMEPDVVVWRALLS----------ACRTFKRLELGEV---AIVNISRLMGGDYVLLSNMY 251
            +    V W A+++          A R F  +E   +   +I  IS L    +  L ++ 
Sbjct: 331 -LRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLG 389

Query: 252 C-YLKRWDTAENVREIMKKKG 271
           C Y  R      +  +++  G
Sbjct: 390 CSYFSRMVNTYGIEPVIEHYG 410


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 174/414 (42%), Positives = 255/414 (61%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M DK +VSWN+M+ G+++N   + AL  FR+M+   V+P + +  SV   C+ L +L   
Sbjct: 555 MEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLG 614

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H   ++  +E N  ++ ++IDMY+K G +  + +VF+ ++   V+ WNAM+ G  IH
Sbjct: 615 REAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIH 674

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +A  +F +M+     PD +TFLG+LTAC+H GLV EG  Y D M++ + + P L+H
Sbjct: 675 GRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKH 734

Query: 181 YGAMVDLLGRAGHIEEAYGLITS-MTMEPDVVVWRALLSACRTFKRLELGE--VAIVNIS 237
           Y  ++D+L RAG ++EA  + T  M+ EP V +W  LLS+CR  K LE+GE   A + +S
Sbjct: 735 YACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIAAKLFVS 794

Query: 238 RL-MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                 +YVLLSN+Y    +WD    VR+ MK+  +RK  G SW+EL G +  F AG+ S
Sbjct: 795 EPEKPENYVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDAGCSWIELNGKVFSFVAGESS 854

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
               + I  +   L +     G+ P T  V  D+SEEEK   L  HSEKLA+ YG+++TS
Sbjct: 855 LDGFEEIKSLWSVLEREIGKMGYRPDTSSVQHDLSEEEKTEQLRGHSEKLAITYGLIRTS 914

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            GT +R+ KNLRIC DCH+  K+IS+++ R I+VRD  RFH F+ G CSCGDYW
Sbjct: 915 EGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGFCSCGDYW 968



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 115/218 (52%), Gaps = 10/218 (4%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K V SWN++IGG+ +++    +L  + +M SS + PD FT  S++  C+++ +L     V
Sbjct: 457 KTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEV 516

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H LII  ++E +  +  +L+ +Y  CG++  A  +FD ++   +  WN M++G   +G  
Sbjct: 517 HGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFP 576

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG- 182
             A ++F +M ++ V P  I+ + +  ACS    +  GR+        Y+++  LE    
Sbjct: 577 ERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHG-----YALKCLLEDNAF 631

Query: 183 ---AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              +++D+  + G + E++ +   +  E  V  W A++
Sbjct: 632 IACSVIDMYAKNGSVMESFKVFNGLK-ERSVASWNAMV 668



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 137/319 (42%), Gaps = 54/319 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE----PDKFTFASVIYGCARLGA 56
           MP++++VSWNSMI  F  N   +E      +M+    E    PD  T A+V+  CAR   
Sbjct: 245 MPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDRE 304

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
           +     VH L ++  ++   +++ AL+DMYSKCG I  A+ +F      +V  WN M+ G
Sbjct: 305 IGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGG 364

Query: 117 VAIHG------------------LAADASAIFTKMEMF---NVLP--------------- 140
            +  G                  L AD   I   + +    +VLP               
Sbjct: 365 FSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCYSLKQEFV 424

Query: 141 --DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIE--- 195
             + +     + + + CG +    + F  +RS+      +  + A++    ++       
Sbjct: 425 HNNELVANAFVASYAKCGSLSYAHRVFCSIRSK-----TVNSWNALIGGYSQSSDPRLSL 479

Query: 196 EAYGLITSMTMEPDVVVWRALLSACRTFKRLELG-EVAIVNISRLMGGD---YVLLSNMY 251
           +AY  + S  + PD+    +LLSAC   K L+LG EV  + I   +  D   Y+ L ++Y
Sbjct: 480 DAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLY 539

Query: 252 CYLKRWDTAENVREIMKKK 270
            +     TA  + + M+ K
Sbjct: 540 IHCGELSTAHVLFDAMEDK 558



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 104/219 (47%), Gaps = 7/219 (3%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYW 62
           K++  WN++I  + RN  +   L  F +M++ S + PD FTF  V+  CA +  +     
Sbjct: 146 KNLFQWNAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLA 205

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH L+++ ++  +  +S AL+  Y   G +  A  VF  +   ++  WN+MI   + +GL
Sbjct: 206 VHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGL 265

Query: 123 AADASAIFTKM----EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           + +   +  +M    +     PD  T   +L  C+    +  G K    +  + S+  ++
Sbjct: 266 SEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVG-KGVHGLAMKLSLDKEV 324

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
               A++D+  + G I +A  +I  +    +VV W  ++
Sbjct: 325 VVNNALMDMYSKCGCINDAQ-VIFKLNNNKNVVSWNTMV 362



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 113/274 (41%), Gaps = 52/274 (18%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSS--KVEPDKFTFASVIYGCARLGALNHA 60
           +K+VVSWN+M+GGF       +     R+ML+    +  D+ T  + +  C     L + 
Sbjct: 352 NKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNL 411

Query: 61  YWVHNLIIEKK-IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             +H   ++++ +  N +++ A +  Y+KCG +  A  VF +++   V+ WNA+I G + 
Sbjct: 412 KELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQ 471

Query: 120 HG---LAADASAIFTKMEMFNVLPDSITFLGLLTACS----------------------- 153
                L+ DA   + +M+   +LPD  T   LL+ACS                       
Sbjct: 472 SSDPRLSLDA---YFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERD 528

Query: 154 ------------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
                       HCG +      FD M  +      L  +  MV+   + G  E A  L 
Sbjct: 529 SFVYISLLSLYIHCGELSTAHVLFDAMEDK-----TLVSWNTMVNGYLQNGFPERALSLF 583

Query: 202 TSMTM---EPDVVVWRALLSACRTFKRLELGEVA 232
             M +   +P  +   ++  AC     L LG  A
Sbjct: 584 RQMVLYGVQPCEISMMSVFGACSLLPSLRLGREA 617



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 88/183 (48%), Gaps = 7/183 (3%)

Query: 63  VHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           +H L+ E  ++  + +L   +I MYS CG    ++ VFD +++ ++  WNA+IS  + + 
Sbjct: 103 IHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNE 162

Query: 122 LAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           L  +   +F KM     +LPD+ TF  ++ AC+    V+ G      +  +  +   +  
Sbjct: 163 LYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHG-LVVKTRLVEDVFV 221

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
             A+V   G  G + +A  +   M  E ++V W +++   R F    L E   + + ++M
Sbjct: 222 SNALVSFYGTNGSVSDALRVFKIMP-ERNLVSWNSMI---RVFSDNGLSEECFLLLGQMM 277

Query: 241 GGD 243
             D
Sbjct: 278 EKD 280


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 165/413 (39%), Positives = 247/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D+DVVSW +MI     + R +E    FR+++ S V P+++TFA V+  CA   A +  
Sbjct: 281 MKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLG 340

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++    +      +AL+ MYSKCG  ++A+ VF+ + + D+  W ++I G A +
Sbjct: 341 KEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQN 400

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A   F  +      PD +T++G+L+AC+H GLV++G +YF  ++ ++ +    +H
Sbjct: 401 GQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADH 460

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE---VAIVNIS 237
           Y  ++DLL R+G  +EA  +I +M ++PD  +W +LL  CR    LEL +    A+  I 
Sbjct: 461 YACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIE 520

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 Y+ L+N+Y     W    NVR+ M   G+ K  GKSW+E+   +H F  GD SH
Sbjct: 521 PENPATYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVGDTSH 580

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+   I + LG L ++ K EG++P T  VL DV EE+KE NL +HSEKLA+ +GI+ T P
Sbjct: 581 PKTSDIHEFLGELSKKIKEEGYVPDTNFVLHDVEEEQKEQNLVYHSEKLAVVFGIISTPP 640

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT I++ KNLR C DCH+ IK IS++++R I VRD  RFH FE G CSC DYW
Sbjct: 641 GTPIKVFKNLRTCVDCHTAIKYISKIVQRKITVRDSNRFHCFEDGSCSCKDYW 693



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 131/314 (41%), Gaps = 49/314 (15%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           MP +D  SWN+ I G+V + +  EAL  FR M    +   +KFT +S +   A +  L  
Sbjct: 179 MPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRL 238

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  +I  ++ L+ ++ +AL+D+Y KCG +  A+ +FD ++  DV  W  MI     
Sbjct: 239 GKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFE 298

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTAC--------------------------- 152
            G   +   +F  +    V P+  TF G+L AC                           
Sbjct: 299 DGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFA 358

Query: 153 --------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEA---YGLI 201
                   S CG     R+ F+ M      QP L  + +++    + G  +EA   + L+
Sbjct: 359 ISALVHMYSKCGNTRVARRVFNEMH-----QPDLVSWTSLIVGYAQNGQPDEALHFFELL 413

Query: 202 TSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG-----GDYVLLSNMYCYLKR 256
                +PD V +  +LSAC     ++ G     +I    G       Y  + ++     R
Sbjct: 414 LQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGR 473

Query: 257 WDTAENVREIMKKK 270
           +  AEN+ + M  K
Sbjct: 474 FKEAENIIDNMPVK 487



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 100/261 (38%), Gaps = 39/261 (14%)

Query: 4   KDVVS----WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           KD+VS    +   +    +  R  EA+        +   P    ++++I  C R  AL  
Sbjct: 49  KDLVSEDNKFEEAVDVLCQQKRVKEAVELLHR---TDHRPSARVYSTLIAACVRHRALEL 105

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              VH             +S  L+DMY+KCG +  A+ +FD +   D+  WN MI G A 
Sbjct: 106 GRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAK 165

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR-------- 171
            G    A  +F +M   +    +    G +T       +E  R    H RS         
Sbjct: 166 LGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSS 225

Query: 172 -------------------YSIQPQLEH----YGAMVDLLGRAGHIEEAYGLITSMTMEP 208
                              Y I+ +L      + A++DL G+ G ++EA G+   M  + 
Sbjct: 226 ALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMK-DR 284

Query: 209 DVVVWRALLSACRTFKRLELG 229
           DVV W  ++  C    R E G
Sbjct: 285 DVVSWTTMIHRCFEDGRREEG 305


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  342 bits (876), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 169/414 (40%), Positives = 257/414 (62%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +++ +W+ MI G+ +N  F++A+  F  M    V  ++    SVI  CA LGAL   
Sbjct: 209 MPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFG 268

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              +  +++  + +N IL  AL+DM+ +CG I+ A  VF+ +   D   W+++I G+A+H
Sbjct: 269 ERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVH 328

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A  A   F++M     +P  +TF  +L+ACSH GLVE+G + +++M+  + I+P+LEH
Sbjct: 329 GHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEH 388

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG +VD+LGRAG + EA   I  M ++P+  +  ALL AC+ +K  E+ E     ++ + 
Sbjct: 389 YGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVK 448

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG-DRS 296
               G YVLLSN+Y    +WD  E++R++MK+K V+K  G S +E+ G I++F  G D+ 
Sbjct: 449 PEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQK 508

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HPE   I +    ++ + +  G+   T     DV EEEKE +++ HSEKLA+AYG++KT 
Sbjct: 509 HPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTK 568

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PGT IRI KNLR+C DCH+  K+IS +  R +IVRDR RFH F  G+CSC DYW
Sbjct: 569 PGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 110/249 (44%), Gaps = 35/249 (14%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + ++  +N +I  F   A   +A  F+ +ML S++ PD  TF  +I   + +  +     
Sbjct: 79  NPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQ 138

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            H+ I+    + +  +  +L+ MY+ CG I  A  +F  +   DV  W +M++G    G+
Sbjct: 139 THSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGM 198

Query: 123 AADASAIFTKMEMFNVLPDSITFLG-------------------------------LLTA 151
             +A  +F +M   N+   SI   G                               ++++
Sbjct: 199 VENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISS 258

Query: 152 CSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
           C+H G +E G + +++ ++S  ++   L    A+VD+  R G IE+A  +   +  E D 
Sbjct: 259 CAHLGALEFGERAYEYVVKSHMTVNLILG--TALVDMFWRCGDIEKAIHVFEGLP-ETDS 315

Query: 211 VVWRALLSA 219
           + W +++  
Sbjct: 316 LSWSSIIKG 324



 Score = 42.7 bits (99), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 75/178 (42%), Gaps = 2/178 (1%)

Query: 95  AKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
           A  +F  +Q  ++ V+N +I   +     + A   +T+M    + PD+ITF  L+ A S 
Sbjct: 70  AYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSE 129

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
              V  G +    +  R+  Q  +    ++V +    G I  A  +   M    DVV W 
Sbjct: 130 MECVLVGEQTHSQI-VRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFR-DVVSWT 187

Query: 215 ALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGV 272
           ++++       +E        +       + ++ N Y     ++ A ++ E MK++GV
Sbjct: 188 SMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGV 245


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  342 bits (876), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 172/414 (41%), Positives = 257/414 (62%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           +P +DV+SWN++I G+ +N    EA+  +  M   + + P++ T+ S++   + +GAL  
Sbjct: 411 LPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQ 470

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  +I+  + L+  ++  LIDMY KCG+++ A  +F  + +     WNA+IS + I
Sbjct: 471 GMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGI 530

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG    A  +F  M    V  D ITF+ LL+ACSH GLV+E +  FD M+  Y I+P L+
Sbjct: 531 HGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLK 590

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HYG MVDL GRAG++E+AY L+++M ++ D  +W  LL+ACR     ELG  A   ++ +
Sbjct: 591 HYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLEV 650

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVLLSN+Y  + +W+ A  VR + + +G+RK+ G S + +  V+  F AG++S
Sbjct: 651 DSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVGSVVEVFYAGNQS 710

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+   I + L  L  + KS G++P    VL DV E+EKE  L  HSE+LA+ +GI+ T 
Sbjct: 711 HPQCAEIYEELRVLNAKMKSLGYVPDYSFVLQDVEEDEKEEILTSHSERLAIVFGIISTP 770

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           P + IRI KNLR+C DCH+  K IS++  R IIVRD  RFH F+ G+CSCGDYW
Sbjct: 771 PKSPIRIFKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGICSCGDYW 824



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 119/221 (53%), Gaps = 4/221 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D+VSWNS+I  + +N     AL FF+EML   + PD  T  S+     +L      
Sbjct: 309 MEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIG 368

Query: 61  YWVHNLIIEKK-IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             VH  ++  + +E++ ++  AL++MY+K G I  A+ VF+ +   DV  WN +I+G A 
Sbjct: 369 RAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQ 428

Query: 120 HGLAADASAIFTKMEMF-NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +GLA++A   +  ME    ++P+  T++ +L A SH G +++G K    +  +  +   +
Sbjct: 429 NGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRL-IKNCLFLDV 487

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                ++D+ G+ G +E+A  L   +  E   V W A++S+
Sbjct: 488 FVATCLIDMYGKCGRLEDAMSLFYEIPQETS-VPWNAIISS 527



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 112/220 (50%), Gaps = 3/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DV SWN+MI GF +N    EALR    M + +V+ D  T +S++  CA+   +   
Sbjct: 208 MPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGG 267

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +I+  +E +  +S ALI+MYSK G++Q A+ VFD ++  D+  WN++I+    +
Sbjct: 268 VLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQN 327

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
                A   F +M    + PD +T + L +          GR      +R R+ ++  + 
Sbjct: 328 DDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRW-LEVDIV 386

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A+V++  + G I+ A  +   +    DV+ W  L++ 
Sbjct: 387 IGNALVNMYAKLGSIDCARAVFEQLPSR-DVISWNTLITG 425



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 117/221 (52%), Gaps = 14/221 (6%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYW 62
           K++ SWNSM+  +VR  R+ +++    E+LS S V PD +TF  V+  C  L        
Sbjct: 112 KNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLA---DGEK 168

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  +++   E +  ++A+LI +YS+ G +++A +VF  +   DV  WNAMISG   +G 
Sbjct: 169 MHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGN 228

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH-- 180
            A+A  +  +M+   V  D++T   +L  C+    V  G     H+   Y I+  LE   
Sbjct: 229 VAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGG--VLVHL---YVIKHGLESDV 283

Query: 181 --YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               A++++  + G +++A  +   M +  D+V W ++++A
Sbjct: 284 FVSNALINMYSKFGRLQDAQRVFDGMEVR-DLVSWNSIIAA 323



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 99/240 (41%), Gaps = 46/240 (19%)

Query: 28  FFREMLSSKV--EPDKFT---------FASVIYGCARLGALNHAYWVHNLIIEKKIELNF 76
           FF   L  K+  +PD            F  V   C  +   N A  +H L++      + 
Sbjct: 27  FFSSSLQHKISHDPDNKNNKNNNVVVDFNLVFRSCTNI---NVAKQLHALLLVLGKAQDV 83

Query: 77  ILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTK-MEM 135
           +L   L+ +Y+  G + ++   F  +QR ++  WN+M+S     G   D+    T+ + +
Sbjct: 84  VLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSL 143

Query: 136 FNVLPDSITFLGLLTAC--------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDL 187
             V PD  TF  +L AC         HC +++ G   F+H          +    +++ L
Sbjct: 144 SGVRPDFYTFPPVLKACLSLADGEKMHCWVLKMG---FEH---------DVYVAASLIHL 191

Query: 188 LGRAGHIEEAYGLITSMTMEPDVVVWRALLS----------ACRTFKRLELGEVAIVNIS 237
             R G +E A+ +   M +  DV  W A++S          A R   R++  EV +  ++
Sbjct: 192 YSRFGAVEVAHKVFVDMPVR-DVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVT 250


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  342 bits (876), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 169/413 (40%), Positives = 245/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++DVVSW +MI  +++N R +E    FR +++S + P+ FTFA V+  CA L A +  
Sbjct: 312 MEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLG 371

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  ++    +     ++AL+ MYSKCG I+ AK VF+ + + D+  W +++ G A H
Sbjct: 372 KQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQH 431

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A   F  +      PD I F+G+L+AC+H GLV++G +YF  ++ ++ +   ++H
Sbjct: 432 GQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDH 491

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  ++DLL RAG   EA  +I  M ++PD  +W ALL  CR    LEL + A   +  I 
Sbjct: 492 YACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIE 551

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 YV L+N+Y          N+RE M  +G+ K  G SW+E+   +H F  GD SH
Sbjct: 552 PENPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSH 611

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+++ I + L  L +R K  G++P T  VL DV  E+KE NL +HSEKLA+A+GI+ T  
Sbjct: 612 PKSKEILEYLSELSKRMKEVGYVPDTNFVLHDVELEQKEENLSYHSEKLAVAFGIISTPS 671

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT I++ KNLR C DCH+ IK IS +  R IIVRD  RFH FEGG CSC DYW
Sbjct: 672 GTPIKVFKNLRTCVDCHNAIKFISNITGRKIIVRDSNRFHCFEGGSCSCKDYW 724



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 3/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKV-EPDKFTFASVIYGCARLGALNH 59
           MP++D  SW ++I G V++ R +EAL  +R M      + +K T +S +   A + +L+ 
Sbjct: 210 MPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHM 269

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  I+   ++ + ++  +L+DMY KCG I+ A+ +FD ++  DV  W  MI     
Sbjct: 270 GKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLK 329

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G   +  A+F  +   N++P+  TF G+L AC+     + G++   +M  R        
Sbjct: 330 NGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYM-VRVGFDSFSS 388

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              A+V +  + G IE A  +   +  +PD+  W +LL
Sbjct: 389 AASALVHMYSKCGDIENAKSVFEILP-QPDLFSWTSLL 425



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 104/259 (40%), Gaps = 45/259 (17%)

Query: 26  LRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM 85
           LR   ++L    +P    + +++  C +  AL     VH  I +    +   +S  L+DM
Sbjct: 104 LREAVQLLYRIEKPYASIYLTLLKFCLKQRALKEGKQVHAHI-KTSGSIGLYISNRLLDM 162

Query: 86  YSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145
           Y+KCG +  A++VFD +   D+  WN MISG    G    A  +F KM       D+ ++
Sbjct: 163 YAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPN----RDNFSW 218

Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSR-YSIQ---------------PQLEHYG------- 182
             +++ C      EE  + +  M+   YS                 P L H G       
Sbjct: 219 TAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSL-HMGKKIHGHI 277

Query: 183 -------------AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG 229
                        +++D+ G+ G IEEA  +   M  E DVV W  ++       R E G
Sbjct: 278 MRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKME-ERDVVSWTTMIHTYLKNGRREEG 336

Query: 230 EVAIVNI--SRLMGGDYVL 246
                ++  S +M  D+  
Sbjct: 337 FALFRHLMNSNIMPNDFTF 355


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  342 bits (876), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 164/413 (39%), Positives = 247/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP K  +SW  M+ G+V     ++AL+ F +M S  V+P  +T+A  +  C  LGAL H 
Sbjct: 392 MPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHG 451

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++   E +     AL+ MY++CG ++ A+ VF  +   D   WNAMIS +  H
Sbjct: 452 KQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQH 511

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M    + PD I+FL +LTAC+H GLV++G +YF+ M   + I P  +H
Sbjct: 512 GHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDH 571

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  ++DLLGRAG I EA  LI +M  EP   +W A+LS CR    +ELG  A   + +++
Sbjct: 572 YARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMV 631

Query: 241 G---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y+LLSN Y    RW  A  VR++M+ +GV+K  G SW+E+   +H F  GD  H
Sbjct: 632 PEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNKVHVFLVGDTKH 691

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+A  + + L  +  + +  G++P T+  L D++  EKE  L+ HSE+LA+++G+LK   
Sbjct: 692 PDAHEVYRFLEMVGAKMRKLGYVPDTKFALQDMAPHEKEYVLFAHSERLAVSFGLLKLPA 751

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  + + KNL+IC DCH+ +  +SR + R I+VRD  RFH F+ G CSCG+YW
Sbjct: 752 GATVTVLKNLKICGDCHTAMMFMSRAVGREIVVRDVRRFHHFKDGECSCGNYW 804



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 126/286 (44%), Gaps = 73/286 (25%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           DVV WN+MI G+V++    EA   FR M+S ++ PD+FTF S++  CA  G   H   VH
Sbjct: 261 DVV-WNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVH 319

Query: 65  NLIIEKKIELNFILSA------ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA------ 112
              I  +++ +F+  A      AL+ +YSK GKI +A ++FD++   DV  WN       
Sbjct: 320 GQFI--RLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYI 377

Query: 113 -------------------------MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLG 147
                                    M+SG    GLA DA  +F +M   +V P   T+ G
Sbjct: 378 ESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAG 437

Query: 148 LLTACSHCGLVEEGRKYFDHM----------------------------RSRYSIQPQLE 179
            + AC   G ++ G++   H+                            R  + + P ++
Sbjct: 438 AVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVD 497

Query: 180 --HYGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSAC 220
              + AM+  LG+ GH  EA  L   M  +   PD + +  +L+AC
Sbjct: 498 SVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTAC 543



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 118/275 (42%), Gaps = 52/275 (18%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSS--KVEPDKFTFASVIYGCARLG--ALNH 59
           +D V  N+MI  F R +    A+  FR +L+S   + PD ++F S++    ++   A++H
Sbjct: 120 RDTVLHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSH 179

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKC------------------------------ 89
              +H  + +        +S ALI +Y KC                              
Sbjct: 180 CTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVG 239

Query: 90  ----GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145
               G +  A+  F+ +      VWNAMISG    G+ A+A  +F +M    + PD  TF
Sbjct: 240 HVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTF 299

Query: 146 LGLLTACSHCGLVEEGRKY---FDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
             LL+AC++ G    G+     F  ++  +  +  L    A+V L  ++G I  A  +  
Sbjct: 300 TSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFD 359

Query: 203 SMTMEPDVVVWRALLS----------ACRTFKRLE 227
           SMT++ DVV W  +LS          A R FK + 
Sbjct: 360 SMTLK-DVVSWNTILSGYIESGCLDNAARIFKEMP 393



 Score = 41.2 bits (95), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 12/91 (13%)

Query: 77  ILSAALIDMYSKCGKIQMAKEVFDTVQ--RNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           + + +L+  Y+  G+++ +   FD+V   R D  + NAMIS  A   LAA A ++F  + 
Sbjct: 90  VAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLL 149

Query: 135 MFN--VLPDSITFLGLLT--------ACSHC 155
             +  + PD  +F  LL+        A SHC
Sbjct: 150 ASDDSLRPDDYSFTSLLSAVGQMHDLAVSHC 180


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  342 bits (876), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 171/411 (41%), Positives = 253/411 (61%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D + VSWN++I G+ ++   ++AL  F+EM ++ V   + TF+SV+  CA   ++ H   
Sbjct: 415 DANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQ 474

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+LI +     + I+  +LID Y+KCG I+ A +VF+++ + DV  WNA+ISG A+HG 
Sbjct: 475 IHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGR 534

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A DA  +F +M   +  P+ +TF+ LL+ C   GLV +G   F+ M   + I+P ++HY 
Sbjct: 535 ATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYT 594

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            +V LLGRAG + +A   I  +   P  +VWRALLS+C   K + LG+ +   +  +   
Sbjct: 595 CIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQ 654

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           D   YVLLSNMY      D    +R+ M+  GV+K  G SW+E+ G +H F  G   HP+
Sbjct: 655 DETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHPD 714

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
            + I+ +L  L  +   EG++P   +VL DV EEEK   L+ HSE+LALAYG+  T PG 
Sbjct: 715 MRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGH 774

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI KNLR C DCH+  K+IS++++R I+VRD  RFH F+ G+CSCGDYW
Sbjct: 775 PIRIMKNLRSCLDCHTVFKVISKIVQREIVVRDINRFHHFDEGICSCGDYW 825



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 109/214 (50%), Gaps = 2/214 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD V+W +M+  +  N   ++AL  F +M  +  +P+ F   SV+     L +      +
Sbjct: 214 KDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGI 273

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   ++   +    +  AL+DMY+KCG I+ A+ VF+ +  +DV +W+ +IS  A     
Sbjct: 274 HGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQN 333

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  +F +M   +V+P+  +  G+L AC++   ++ G++   ++  +   + +L    A
Sbjct: 334 EQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQ-IHNLVIKLGYESELFVGNA 392

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           ++D+  +  ++E +  +  S+  + + V W  ++
Sbjct: 393 LMDVYAKCRNMENSLEIFRSLR-DANEVSWNTII 425



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 108/220 (49%), Gaps = 6/220 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++++VS+ +++ G+     F+EA   FR +     E + F   +++     + A    
Sbjct: 110 MPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPGLT 169

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H    +   + N  + ++LID YS CG +  A+ VFD +   D   W AM+S  + +
Sbjct: 170 CCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSEN 229

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTA--CSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            +  DA   F+KM M    P+      +L A  C    ++ +G  +   +++    +P +
Sbjct: 230 DIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKG-IHGCAVKTLCDTEPHV 288

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
              GA++D+  + G+IE+A  +   +  + DV++W  L+S
Sbjct: 289 G--GALLDMYAKCGYIEDARTVFEIIPHD-DVILWSFLIS 325



 Score = 44.7 bits (104), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 54/255 (21%), Positives = 104/255 (40%), Gaps = 47/255 (18%)

Query: 18  RNARFDEALRFFREMLSSKVEP--DKFTFASVIYGCARLGALNHAYWVHNLIIEKK--IE 73
           RN   + AL++  + L+S   P  D +  A ++  C   G       VH  ++++    +
Sbjct: 22  RNLAANAALQWLDDELASLALPKLDSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQ 81

Query: 74  LNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM 133
           L+   +  L+++Y+K G +  A+ +FD +   ++  +  ++ G A+ G   +A+ +F ++
Sbjct: 82  LDTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRL 141

Query: 134 E-------------MFNVL-----P---------------DSITFLG--LLTACSHCGLV 158
           +             +  VL     P               D   F+G  L+ A S CG V
Sbjct: 142 QREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAV 201

Query: 159 EEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM---EPDVVVWRA 215
              R  FD +  + ++      + AMV         E+A    + M M   +P+  V  +
Sbjct: 202 SHARCVFDGIIWKDAVT-----WTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTS 256

Query: 216 LLSACRTFKRLELGE 230
           +L A        LG+
Sbjct: 257 VLKAAVCLSSAVLGK 271


>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 472

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 171/413 (41%), Positives = 247/413 (59%), Gaps = 5/413 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA-LNHAY 61
           DKD+V+W++M+ G+ +    + A++ F E+    ++P++FTF+S++  CA   A +    
Sbjct: 60  DKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGK 119

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
             H   I+ +++ +  +S+AL+ MY+K G I+ A+EVF   +  D+  WN+MISG A HG
Sbjct: 120 QFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHG 179

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
            A  A  +F +M+   V  D +TF+G+  AC+H GLVEEG KYFD M     I P  EH 
Sbjct: 180 QAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHN 239

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
             MVDL  RAG +E+A  +I +M       +WR +L+ACR  K+ ELG +A   I  +  
Sbjct: 240 SCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKP 299

Query: 242 GD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
            D   YVLLSNMY     W     VR++M ++ V+K  G SW+E+    + F AGDRSHP
Sbjct: 300 EDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHP 359

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
               I   L  L  R K  G+ P T  VL D+ +E KE  L  HSE+LA+A+G++ T  G
Sbjct: 360 LKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKG 419

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEG-GLCSCGDYW 410
           + + I KNLR+C DCH  IK+I+++  R I+VRD  RFH F   G+CSCGD+W
Sbjct: 420 SPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 472



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 1/156 (0%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  +++   E +  +  AL+D Y K GK++ A +VF  +   D+  W+AM++G A  G 
Sbjct: 19  VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGE 78

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
              A  +F ++    + P+  TF  +L  C+         K F     +  +   L    
Sbjct: 79  TEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSS 138

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
           A++ +  + G+IE A  +      E D+V W +++S
Sbjct: 139 ALLTMYAKKGNIESAEEVFKRQR-EKDLVSWNSMIS 173


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  341 bits (875), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 177/415 (42%), Positives = 252/415 (60%), Gaps = 6/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + D+DVV+W +MI G+ ++  + EA+  FR M+     P+ +T A+++   + L +L+H 
Sbjct: 373 LKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHG 432

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV--QRNDVSVWNAMISGVA 118
             +H   ++     +  +S ALI MY+K G I  A   FD +  +R+ VS W +MI  +A
Sbjct: 433 KQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVS-WTSMIIALA 491

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            HG A +A  +F  M M  + PD IT++G+ +AC+H GLV +GR+YFD M+    I P L
Sbjct: 492 QHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTL 551

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
            HY  MVDL GRAG ++EA   I  M +EPDVV W +LLSACR  K ++LG+VA   +  
Sbjct: 552 SHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLL 611

Query: 239 L---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L     G Y  L+N+Y    +W+ A  +R+ MK   V+K QG SW+E+   +H F   D 
Sbjct: 612 LEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDG 671

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           +HPE   I   +  +    K  G++P T  VL D+ EE KE  L HHSEKLA+A+G++ T
Sbjct: 672 THPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLIST 731

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              T +RI KNLR+C+DCH+ IK IS+L+ R IIVRD  RFH F+ G CSC DYW
Sbjct: 732 PDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 121/284 (42%), Gaps = 71/284 (25%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P +D VSW +MI G+    ++ +A+R   +M+   +EP +FT  +V+   A    +   
Sbjct: 106 LPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETG 165

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA-------- 112
             VH+ I++  +  N  +S +L++MY+KCG   MAK VFD +   D+S WNA        
Sbjct: 166 KKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQV 225

Query: 113 -----------------------MISGVAIHGLAADASAIFTKMEMFNVL-PDSITFLGL 148
                                  MISG    G    A  IF+KM   ++L PD  T   +
Sbjct: 226 GQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASV 285

Query: 149 LTAC-----------------------------------SHCGLVEEGRKYFDHMRSRYS 173
           L+AC                                   S CG VE  R+  +    R +
Sbjct: 286 LSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQ---RGT 342

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              ++E + A++D   + G + +A  +  S+  + DVV W A++
Sbjct: 343 KDLKIEGFTALLDGYIKLGDMNQAKNIFVSLK-DRDVVAWTAMI 385



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 118/292 (40%), Gaps = 76/292 (26%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           M ++D+V+WNSMI GF +      AL  F +ML  S + PD+FT ASV+  CA L  L  
Sbjct: 238 MAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCI 297

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQ-------------------------- 93
              +H+ I+    +++ I+  ALI MYS+CG ++                          
Sbjct: 298 GKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGY 357

Query: 94  -------MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFL 146
                   AK +F +++  DV  W AMI G   HG   +A  +F  M      P+S T  
Sbjct: 358 IKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLA 417

Query: 147 -----------------------------------GLLTACSHCGLVEEGRKYFDHMRSR 171
                                               L+T  +  G +    + FD +R  
Sbjct: 418 AMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRC- 476

Query: 172 YSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSAC 220
              +     + +M+  L + GH EEA  L  +M ME   PD + +  + SAC
Sbjct: 477 ---ERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSAC 525


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  341 bits (875), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 170/413 (41%), Positives = 250/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D  +VSWN++I G ++N   + AL  FR+M+   ++P   +  +V   C+ L +L   
Sbjct: 541 MEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLG 600

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H   ++  +E N  ++ ++IDMY+K G I  + +VF+ ++    + WNAMI G  +H
Sbjct: 601 REAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMH 660

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +A  +F +M+     PD +TFLG+LTAC+H GL+ EG +Y D M+S + ++P L+H
Sbjct: 661 GRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKH 720

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  ++D+LGRAG ++ A  +   M+ EPDV +W +LLS CR  + LE+GE     +  L 
Sbjct: 721 YACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGEKVAAKLFVLE 780

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                +YVLLSN+Y  L +WD    VR+ MK+  +RK  G SW+EL G +  F  G+R  
Sbjct: 781 PEKPENYVLLSNLYAGLGKWDDVRQVRQRMKEMSLRKDAGCSWIELNGKVFSFVVGERFL 840

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
              + I  +   L  +    G+ P T  V  D+SEEEK   L  HSEKLA+ YG++KTS 
Sbjct: 841 DGFEEIKSLWSILEMKIWKMGYRPDTSSVQHDLSEEEKIEQLRGHSEKLAITYGLIKTSE 900

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT +R+ KNLRIC DCH+  K+IS+++ R I+VRD  RFH F  G CSCGDYW
Sbjct: 901 GTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFNKGFCSCGDYW 953



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 110/218 (50%), Gaps = 10/218 (4%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K + SWN++IGG+ +++    +L    +M +S + PD FT  S++  C++L +L     V
Sbjct: 443 KTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEV 502

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  II   +E +  +  +++ +Y  CG++   + +FD ++ N +  WN +I+G   +G  
Sbjct: 503 HGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFP 562

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG- 182
             A  +F +M ++ + P  I+ + +  ACS    +  GR+        Y+++  LE    
Sbjct: 563 ERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGRE-----AHAYALKHLLEDNAF 617

Query: 183 ---AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              +++D+  + G I ++  +   +  E     W A++
Sbjct: 618 IACSIIDMYAKNGAITQSSKVFNGLK-EKSAASWNAMI 654



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 110/273 (40%), Gaps = 51/273 (18%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREML--SSKVEPDKFTFASVIYGCARLGALNHA 60
           +K+VVSWN+M+GGF             R+ML  S  V+ D+ T  + +  C     L   
Sbjct: 339 NKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPSL 398

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++++   + +L+ A +  Y+KCG +  A+ VF  ++   ++ WNA+I G A  
Sbjct: 399 KELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQS 458

Query: 121 G---LAADASAIFTKMEMFNVLPDSITFLGLLTACS------------------------ 153
               L+ DA     +M+   +LPD+ T   LL+ACS                        
Sbjct: 459 SDPRLSLDAH---LQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDL 515

Query: 154 -----------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
                      HCG +   +  FD M         L  +  ++    + G  E A GL  
Sbjct: 516 FVYLSVLSLYIHCGELCTVQVLFDAMEDN-----SLVSWNTVITGHLQNGFPERALGLFR 570

Query: 203 SMTM---EPDVVVWRALLSACRTFKRLELGEVA 232
            M +   +P  +    +  AC     L LG  A
Sbjct: 571 QMVLYGIQPCGISMMTVFGACSLLPSLRLGREA 603



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 101/215 (46%), Gaps = 15/215 (6%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYW 62
           K++  WN++I  + RN  + E L  F +M+S + + PD FTF  VI  CA +  +     
Sbjct: 149 KNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGLA 208

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH L+++  +  +  +  AL+  Y   G +  A ++FD +   ++  WN+MI   + +G 
Sbjct: 209 VHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNG- 267

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             D  A          +PD  T + +L  C+    +  G K       + S+  +L    
Sbjct: 268 --DDGAF---------MPDVATVVTVLPVCAREREIGVG-KGVHGWAVKLSLDKELVVNN 315

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           A++D+  + G I ++  +I  +    +VV W  ++
Sbjct: 316 ALMDMYSKWGCIIDSQ-MIFKLNNNKNVVSWNTMV 349



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 109/272 (40%), Gaps = 61/272 (22%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++++VSWNSMI  F  N   D A             PD  T  +V+  CAR   +   
Sbjct: 248 MPERNLVSWNSMIRVFSDNGD-DGAFM-----------PDVATVVTVLPVCAREREIGVG 295

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA-- 118
             VH   ++  ++   +++ AL+DMYSK G I  ++ +F      +V  WN M+ G +  
Sbjct: 296 KGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAE 355

Query: 119 --IHG--------LAADASAIFTKMEMFNVLP-------------------------DSI 143
             IHG        LA        ++ + N +P                         D +
Sbjct: 356 GDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDEL 415

Query: 144 TFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
                + + + CG +   ++ F  +RS+      L  + A++   G A   +    L   
Sbjct: 416 LANAFVASYAKCGSLSYAQRVFHGIRSK-----TLNSWNALIG--GYAQSSDPRLSLDAH 468

Query: 204 MTME-----PDVVVWRALLSACRTFKRLELGE 230
           + M+     PD     +LLSAC   K L LG+
Sbjct: 469 LQMKNSGLLPDNFTVCSLLSACSKLKSLRLGK 500



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 79/158 (50%), Gaps = 6/158 (3%)

Query: 63  VHNLII-EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           +H+L+    ++  + +L   +I MY+ CG    ++  FD ++  ++  WNA+IS  + + 
Sbjct: 106 IHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNE 165

Query: 122 LAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
           L  +   +F KM    ++LPD+ TF  ++ AC+  G+ + G     H +  +  +   L 
Sbjct: 166 LYHEVLEMFIKMISKTHLLPDNFTFPCVIKACA--GISDVGIGLAVHGLVVKTGLVEDLF 223

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              A+V   G  G + +A  L   M  E ++V W +++
Sbjct: 224 VGNALVSFYGTHGFVSDALKLFDIMP-ERNLVSWNSMI 260


>gi|359493563|ref|XP_002269754.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71420-like [Vitis vinifera]
          Length = 741

 Score =  341 bits (875), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 173/415 (41%), Positives = 253/415 (60%), Gaps = 13/415 (3%)

Query: 4   KDVVSWNSMIGGFV-RNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +DVVSW  +I  F  R+ +  +AL  FR+ L   + PD+  F+ V+  CA L    HA  
Sbjct: 332 QDVVSWTGIIAAFAERDPK--KALVIFRQFLRECLAPDRHMFSIVLKACAGLATERHALT 389

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           V + +++   E + +L+ ALI   ++CG + ++K+VFD +   D   WN+M+   A+HG 
Sbjct: 390 VQSHVLKVGFEDDIVLANALIHACARCGSVALSKQVFDKMGSRDTVSWNSMLKAYAMHGQ 449

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F++M+     PD  TF+ LL+ACSH G+ EEG K F+ M + + I PQL+HY 
Sbjct: 450 GKEALLLFSQMD---AQPDGATFVALLSACSHAGMAEEGAKIFETMSNNHGIVPQLDHYA 506

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            MVD+LGRAG I EA  LI  M MEPD VVW ALL +CR     +L ++A V +  L   
Sbjct: 507 CMVDILGRAGQISEAKELIDKMPMEPDSVVWSALLGSCRKHGETKLAKLAAVKLKELDPN 566

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           +   YVL+SN++C   R++ A  +R  M+ K VRK  G SW+E+   +H+F +G + HPE
Sbjct: 567 NSLGYVLMSNIFCTDGRFNEARLIRREMEGKIVRKEPGLSWIEVGNQVHEFASGGQQHPE 626

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS--- 356
            +AI   L  L++R K  G++P   L L D+ +E KE  LY+HSEKLALA+ ++      
Sbjct: 627 KEAICARLEELVRRLKDLGYVPQISLALHDIEDEHKEEQLYYHSEKLALAFALMNVGSIC 686

Query: 357 -PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             G  I+I KN+RIC DCH+++K+ S L+   I+VRD  RFH F+  +CSC DYW
Sbjct: 687 CSGNTIKIMKNIRICVDCHNFMKLASELVDMEIVVRDSNRFHHFKAKVCSCNDYW 741



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 104/221 (47%), Gaps = 5/221 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K++VSW +++ G+ ++ R +E  R FR ML    +P +F FASVI  C   G  N  
Sbjct: 126 MPEKNIVSWTALVSGYAQHGRSNECFRVFRGMLIWH-QPTEFAFASVISACG--GDDNCG 182

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSK-CGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             VH L ++   +    +  ALI MY K CG    A  V++ +   ++  WN+MI+G  +
Sbjct: 183 RQVHALALKTSFDSCVYVGNALIMMYCKSCGGADEAWNVYEAMGFRNLVSWNSMIAGFQV 242

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            G    A  +F++M +  +  D  T + + +     G   E       +  +     ++E
Sbjct: 243 CGCGNRALELFSQMHVGGIRFDRATLVSIFSCLCGMGDGLECCFQLQCLTIKTGFILKIE 302

Query: 180 HYGAMVDLLGR-AGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A+V       G + + Y +   +    DVV W  +++A
Sbjct: 303 VATALVKAYSSLGGEVSDCYRIFLELDGRQDVVSWTGIIAA 343



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 7/143 (4%)

Query: 20  ARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGAL--NHAYWVHNLIIEKKIELNF 76
               EAL+ F  +     +     T+A++   CAR  +L    A   H  +     + N 
Sbjct: 41  GHLQEALKLFYSITPPPPLVHSHHTYAALFQACARRSSLPEGQALHRHMFLHNPNSDFNL 100

Query: 77  ILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMF 136
            L+  +++MY+KCG +  A ++FD +   ++  W A++SG A HG + +   +F  M ++
Sbjct: 101 FLTNHVVNMYAKCGSLDYAHQMFDEMPEKNIVSWTALVSGYAQHGRSNECFRVFRGMLIW 160

Query: 137 NVLPDSITFLGLLTACS---HCG 156
           +  P    F  +++AC    +CG
Sbjct: 161 HQ-PTEFAFASVISACGGDDNCG 182



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 5/123 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG-ALNH 59
           M  +D VSWNSM+  +  + +  EAL  F +M     +PD  TF +++  C+  G A   
Sbjct: 429 MGSRDTVSWNSMLKAYAMHGQGKEALLLFSQM---DAQPDGATFVALLSACSHAGMAEEG 485

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
           A     +     I       A ++D+  + G+I  AKE+ D +    D  VW+A++    
Sbjct: 486 AKIFETMSNNHGIVPQLDHYACMVDILGRAGQISEAKELIDKMPMEPDSVVWSALLGSCR 545

Query: 119 IHG 121
            HG
Sbjct: 546 KHG 548


>gi|357464871|ref|XP_003602717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491765|gb|AES72968.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 554

 Score =  341 bits (875), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 176/417 (42%), Positives = 249/417 (59%), Gaps = 7/417 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEP----DKFTFASVIYGCARLGA 56
           M  +D+VSW+++I   V+N    EAL  F++M     +     D+    SVI   + LG 
Sbjct: 138 MRRRDIVSWSTLISCLVKNNLPAEALSVFQQMQMGHRDIRNWLDRAIMLSVISAVSSLGV 197

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
           +    WVH+ I+   I +   L  ALI+MYS+CG I  + +VFD +   +V  W A+I+G
Sbjct: 198 IELGIWVHSFIVRMGIVMTVPLGTALINMYSRCGLIDRSVKVFDEMPERNVVTWTALING 257

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
           +A+HG + +A  +F +M+   + PD   F+G+L ACSH GLVE+G + F+ MR  + I+P
Sbjct: 258 LAVHGRSREALKVFYEMKESGLKPDGALFIGVLVACSHGGLVEDGWRVFESMRDEFGIKP 317

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---I 233
            LEHYG MVDLLGRAG I EA+  +  M ++P+ V+WR LL AC     L L E A   I
Sbjct: 318 MLEHYGCMVDLLGRAGLILEAFDFVEEMPLKPNSVIWRTLLGACVNHNHLGLAEKARERI 377

Query: 234 VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
           + +     GDYVLLSN Y  +  W     +R  MK+  + K  G S++ +  V+H+F +G
Sbjct: 378 IELDPYHDGDYVLLSNAYGRVGNWGGKAGLRNSMKQNRIVKEPGLSFVHIDQVVHEFVSG 437

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           D  HP+ + I K L S+I   K  G+ P T  VL D+ +EEKE  L +HSEKLA+A+ +L
Sbjct: 438 DHVHPQWEEITKFLASIIDTVKLGGYTPNTSSVLHDIQDEEKEHCLGYHSEKLAVAFVLL 497

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
                  IR+ KNLRIC+DCH ++K  S +  R II+RDR RFH F  GLCSC D+W
Sbjct: 498 YHRDRRTIRVIKNLRICYDCHDFMKHASGIFDRDIIIRDRNRFHHFSKGLCSCQDFW 554



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 102/226 (45%), Gaps = 17/226 (7%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
            D  S+N++I    ++     A+  F  M  + V  D FTF  ++         +     
Sbjct: 51  PDPFSYNTII----KHVSPTGAISLFSHMHRNSVPFDHFTFPLILKHHHHHLLHS----- 101

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
             LI +   + N  +  ALI+ Y   G + +A ++FD ++R D+  W+ +IS +  + L 
Sbjct: 102 --LIFKLGFDTNIFVQNALINAYGSRGSLDVAVKLFDEMRRRDIVSWSTLISCLVKNNLP 159

Query: 124 ADASAIFTKMEM----FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           A+A ++F +M+M         D    L +++A S  G++E G  +      R  I   + 
Sbjct: 160 AEALSVFQQMQMGHRDIRNWLDRAIMLSVISAVSSLGVIELG-IWVHSFIVRMGIVMTVP 218

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKR 225
              A++++  R G I+ +  +   M  E +VV W AL++      R
Sbjct: 219 LGTALINMYSRCGLIDRSVKVFDEMP-ERNVVTWTALINGLAVHGR 263


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  341 bits (875), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 168/415 (40%), Positives = 261/415 (62%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD+V+WN+ +   V+      AL +F +M +  V+ D FT  S++  C +LG+L   
Sbjct: 170 MQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIG 229

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +++   +++I+ N I+  A +DM+ KCG  + A+ +F+ +++ +V  W+ MI G A++
Sbjct: 230 EEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMN 289

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM--RSRYSIQPQL 178
           G + +A  +FT M+   + P+ +TFLG+L+ACSH GLV EG++YF  M   +  +++P+ 
Sbjct: 290 GDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRK 349

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVN 235
           EHY  MVDLLGR+G +EEAY  I  M +EPD  +W ALL AC   + + LG+     +V 
Sbjct: 350 EHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVE 409

Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
            +  +G  +VLLSN+Y    +WD  + VR  M+K G +K    S +E  G IH F  GD+
Sbjct: 410 TAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDK 469

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SHP+++AI + L  ++++ +  G++P T  V  DV  EEKE +L HHSEKLA+A+G++K 
Sbjct: 470 SHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKG 529

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            PG  IR+ KNLR C DCH++ K +S L    II+RD+ RFH F  G+CSC ++W
Sbjct: 530 RPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 108/209 (51%), Gaps = 2/209 (0%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           WN++  G+VRN    E+L  +++M    V PD+FT+  V+   ++LG  +  + +H  ++
Sbjct: 77  WNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVV 136

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
           +       I++  L+ MY K G++  A+ +F+++Q  D+  WNA ++     G +A A  
Sbjct: 137 KYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALE 196

Query: 129 IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLL 188
            F KM    V  DS T + +L+AC   G +E G + +D  R +  I   +    A +D+ 
Sbjct: 197 YFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRAR-KEEIDCNIIVENARLDMH 255

Query: 189 GRAGHIEEAYGLITSMTMEPDVVVWRALL 217
            + G+ E A  L   M  + +VV W  ++
Sbjct: 256 LKCGNTEAARVLFEEMK-QRNVVSWSTMI 283



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 20/167 (11%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H +++         L   L++     G +  A++VFD + +  + +WN +  G   + L
Sbjct: 30  IHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQL 89

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             ++  ++ KM    V PD  T+  ++ A S  G    G          +++   +  YG
Sbjct: 90  PFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCG----------FALHAHVVKYG 139

Query: 183 ---------AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
                     +V +  + G +  A  L  SM ++ D+V W A L+ C
Sbjct: 140 FGCLGIVATELVMMYMKFGELSSAEFLFESMQVK-DLVAWNAFLAVC 185


>gi|220061997|gb|ACL79586.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 587

 Score =  341 bits (874), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 172/421 (40%), Positives = 252/421 (59%), Gaps = 16/421 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM------LSSKVEPDKFTFASVIYGCARL 54
           M  +DV +WNS++ G  +    + AL  F  +      L S+ EP++ T  + +  CA++
Sbjct: 172 MTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSACAQI 231

Query: 55  GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV--WNA 112
           G L    +VH       ++ N  +  +LIDMYSKCG +  A +VF +++  D ++  +NA
Sbjct: 232 GLLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQTLVSYNA 291

Query: 113 MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY 172
            I   ++HG   DA  +F +M    + PD +T+L +L  C+H GLV++G + F+ MR   
Sbjct: 292 AIQAHSMHGHGGDALRLFDEMPT-RIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMR--- 347

Query: 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA 232
            + P ++HYG +VDLLGRAG + EAY  + SM    D+V+W+ LL A +    +EL E+A
Sbjct: 348 -VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELA 406

Query: 233 IVNISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQ 289
              ++ L   + GDYVLLSN+Y    RW     VR+ M+   VRK  G S+ E+ GV+H+
Sbjct: 407 ANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHK 466

Query: 290 FKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALA 349
           F  GD+ HP  Q I + L  ++ R    G+ P T  VL D+ EEEK+  L +HSEKLA+A
Sbjct: 467 FINGDKEHPRWQEIYRALEDIVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEKLAIA 526

Query: 350 YGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDY 409
           +G++ T PG  +R+ KNLRIC DCH   K+IS+   RVI++RDR RFHRFE G CSC DY
Sbjct: 527 FGLIATPPGETLRVIKNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRDY 586

Query: 410 W 410
           W
Sbjct: 587 W 587



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 88/180 (48%), Gaps = 7/180 (3%)

Query: 39  PDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEV 98
           PD  + +  +   AR    +    +H L++   +  +  L   L+D Y+KCG +  A++V
Sbjct: 109 PDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKV 168

Query: 99  FDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM-EMFNVL-----PDSITFLGLLTAC 152
           FD +   DV+ WN++++G+A       A A+F ++   F  L     P+ +T +  L+AC
Sbjct: 169 FDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSAC 228

Query: 153 SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
           +  GL+++G  Y      R+ +   +    +++D+  + G +  A  +  S+  E   +V
Sbjct: 229 AQIGLLKDG-MYVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQTLV 287


>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
 gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  341 bits (874), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 165/396 (41%), Positives = 254/396 (64%), Gaps = 3/396 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DV+++NSMI G++ + R  +AL+ F ++    +  D FT  S++  CA LGAL   
Sbjct: 328 MGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQG 387

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I ++ +E +  L  AL+DMY KCG++  A  VF  +   DV  W+AMI+G+A +
Sbjct: 388 RALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFN 447

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G+  DA   F +M+     P S+T++ +LTACSH  L+ EGR++F+ MRS + + PQ+EH
Sbjct: 448 GMGMDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLNEGRQHFNEMRSLHKLHPQIEH 507

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           YG M+DLL R+G ++EA  L+ +M M+P+ V+W ++LSACR  K ++L   A  ++ +L 
Sbjct: 508 YGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWASILSACRVHKNIDLARHAAEHLLKLA 567

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             +   YV L N+Y   ++W  A+ +R +M+++GV+K+ G S + +AG +H+F   D+SH
Sbjct: 568 PEEDAVYVQLYNIYIDSRQWVEAKRIRMLMEEQGVKKTAGYSSITVAGQVHKFVVNDQSH 627

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    I  ++  + +R KS G+ PAT  + +DV EEEKE  L  HSEK+A+A+G++   P
Sbjct: 628 PWTLEIITMMEEIARRLKSAGYSPATSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPP 687

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDR 393
              I I KNLR+C DCHS IK+IS+L  R IIVRDR
Sbjct: 688 NLPIHIMKNLRVCEDCHSAIKLISQLWNREIIVRDR 723



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 119/249 (47%), Gaps = 34/249 (13%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P+++VVSW S+I G+ R  R  +A+  F  MLS  VEPD+      +  C++L  L    
Sbjct: 196 PERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSACSKLKNLEFGR 255

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN---------------- 105
            +H L+ +K+I++   L   LIDMY+KCG I  A+ VFD V R                 
Sbjct: 256 LLHLLVGKKRIQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKL 315

Query: 106 ----------------DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
                           DV  +N+MI+G    G   DA  +F ++    +  D+ T + LL
Sbjct: 316 GHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLL 375

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
           TAC+  G + +GR     +  R  ++  +    A+VD+  + G ++EA  +   M  E D
Sbjct: 376 TACASLGALPQGRALHASIEQRI-VEEDVYLVTALVDMYMKCGRVDEATAVFHRMG-ERD 433

Query: 210 VVVWRALLS 218
           V  W A+++
Sbjct: 434 VHTWSAMIA 442



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 74/196 (37%), Gaps = 35/196 (17%)

Query: 42  FTFASVIYGCARLGALNHAYWVHNLIIEKKI-ELNFILSAALIDMYSKCGKIQMAKEVFD 100
           FTF  V   CA          +H   +   +     I++  LI MY+  G    A+  FD
Sbjct: 103 FTFHFVFRCCAAGAGAGLCRMLHAACLRTMLPSAARIVANPLIHMYASLGLTDDARRAFD 162

Query: 101 TV--------------------------------QRNDVSVWNAMISGVAIHGLAADASA 128
            V                                +RN VS W ++I+G +  G  ADA  
Sbjct: 163 EVPVKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVS-WTSLIAGYSRAGRPADAVY 221

Query: 129 IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLL 188
            F  M    V PD +  +G L+ACS    +E GR     +  +  IQ   +    ++D+ 
Sbjct: 222 CFNCMLSDGVEPDEVAVIGALSACSKLKNLEFGR-LLHLLVGKKRIQMTDKLVVTLIDMY 280

Query: 189 GRAGHIEEAYGLITSM 204
            + G I +A  +  ++
Sbjct: 281 AKCGDIAQAQAVFDAV 296


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  341 bits (874), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 174/416 (41%), Positives = 254/416 (61%), Gaps = 7/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D VSW++MI GF  N  FDEA  FFRE+L  ++  ++ +   V+  CA+ GA    
Sbjct: 226 MPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFG 285

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT--VQRNDVSVWNAMISGVA 118
             +H  + +        ++ ALID YSKCG + MA+ VF    V R+ VS W ++I+G+A
Sbjct: 286 KILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIVS-WTSIIAGLA 344

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG   +A  +F +ME   V PD ITF+ LL ACSH GLVEEG   F  M++ Y I+P +
Sbjct: 345 MHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAI 404

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           EHYG MVDL GRA  +++AY  I  M + P+ ++WR LL AC     +E+ E+    ++ 
Sbjct: 405 EHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAE 464

Query: 239 L---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           +     GD+VLLSN+Y    +W    ++R  M +  ++K+ G S +E+  VI+ F AG++
Sbjct: 465 MDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKKTPGWSMIEIDKVIYGFVAGEK 524

Query: 296 SHPEAQAIDKILGSLIQRTKSE-GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
            +   +   + L  ++ R ++E G+ P    VL D+ EEEKE ++  HSEKLA A+GI K
Sbjct: 525 PNEVTEEAHEKLREIMLRLRTEAGYAPQLRSVLHDIEEEEKEDSVSKHSEKLAAAFGIAK 584

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              G  +RI KNLR+C DCH+ +K+IS++ +  IIVRDR RFH F+ G CSC DYW
Sbjct: 585 LPKGRILRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKDGFCSCRDYW 640



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 95/235 (40%), Gaps = 13/235 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
            P+ D    N++I     +     +L  F ++     + PD FTFA  +   A    L  
Sbjct: 62  FPNPDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRP 121

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H+       + +  +   LI MY++CG    A+ VFD +   +V  WNA+++    
Sbjct: 122 GIQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFR 181

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            G    A  +F  M + N+     ++ G+L   +  G +   R+ F  M  R  +     
Sbjct: 182 CGDVEGAQDVFGCMPVRNL----TSWNGMLAGYAKAGELGLARRVFYEMPLRDEVS---- 233

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELGEV 231
            +  M+      G  +EA+G    +  E    + V    +LSAC      E G++
Sbjct: 234 -WSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKI 287


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 171/415 (41%), Positives = 248/415 (59%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA-LNH 59
           + DKD+V+W++M+ G+ +    + A++ F E+    ++P++FTF+S++  CA   A +  
Sbjct: 454 IDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQ 513

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
               H   I+ +++ +  +S+AL+ MY+K G I+ A+EVF   +  D+  WN+MISG A 
Sbjct: 514 GKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQ 573

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG A  A  +F +M+   V  D +TF+G+  AC+H GLVEEG KYFD M     I P  E
Sbjct: 574 HGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKE 633

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           H   MVDL  RAG +E+A  +I +M       +WR +L+ACR  K+ ELG +A   I  +
Sbjct: 634 HNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAM 693

Query: 240 MGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
              D   YVLLSNMY     W     VR++M ++ V+K  G SW+E+    + F AGDRS
Sbjct: 694 KPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRS 753

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP    I   L  L  R K  G+ P T  VL D+ +E KE  L  HSE+LA+A+G++ T 
Sbjct: 754 HPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATP 813

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEG-GLCSCGDYW 410
            G+ + I KNLR+C DCH  IK+I+++  R I+VRD  RFH F   G+CSCGD+W
Sbjct: 814 KGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 113/230 (49%), Gaps = 23/230 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++VV+W ++I G+ RN+  DE L  F  M +   +P+ FTFA+ +   A  G     
Sbjct: 154 MKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRG 213

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH ++++  ++    +S +LI++Y KCG ++ A+ +FD  +   V  WN+MISG A +
Sbjct: 214 LQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAAN 273

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACS-----------HCGLVEEGRKYFDHMR 169
           GL  +A  +F  M +  V     +F  ++  C+           HC +V+ G  +  ++R
Sbjct: 274 GLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIR 333

Query: 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +  ++        AM+D          A  L   +    +VV W A++S 
Sbjct: 334 T--ALMVAYSKCTAMLD----------ALRLFKEIGCVGNVVSWTAMISG 371



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 104/215 (48%), Gaps = 5/215 (2%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +VVSW +MI GF++N   +EA+  F EM    V P++FT++ ++     +        VH
Sbjct: 361 NVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSE----VH 416

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             +++   E +  +  AL+D Y K GK++ A +VF  +   D+  W+AM++G A  G   
Sbjct: 417 AQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETE 476

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
            A  +F ++    + P+  TF  +L  C+         K F     +  +   L    A+
Sbjct: 477 AAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSAL 536

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           + +  + G+IE A  +      E D+V W +++S 
Sbjct: 537 LTMYAKKGNIESAEEVFKRQR-EKDLVSWNSMISG 570



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 100/218 (45%), Gaps = 2/218 (0%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P +D  S+ S++ GF R+ R  EA R F  +    +E D   F+SV+   A L       
Sbjct: 54  PGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGR 113

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H   I+     +  +  +L+D Y K    +  ++VFD ++  +V  W  +ISG A + 
Sbjct: 114 QLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNS 173

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
           +  +   +F +M+     P+S TF   L   +  G+   G +    +  +  +   +   
Sbjct: 174 MNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQ-VHTVVVKNGLDKTIPVS 232

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            ++++L  + G++ +A  ++   T    VV W +++S 
Sbjct: 233 NSLINLYLKCGNVRKAR-ILFDKTEVKSVVTWNSMISG 269


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 173/411 (42%), Positives = 254/411 (61%), Gaps = 4/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++DVV WNSM+  + +N + DE+L   R M  + ++P + TF   I   A  G L     
Sbjct: 165 ERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKE 224

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H        E N  +  AL+DMY+K G + +A+ +F+ ++   V  WNAMI+G A+HG 
Sbjct: 225 LHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGH 284

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A +A  +F +M+   VLPD ITF+G+L ACSH GL+ EG+ +F  M S ++I P ++HY 
Sbjct: 285 ANEALDLFKEMKG-KVLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYT 343

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM-- 240
            M+DLLG  G +EEAY LI  M +EPD  VW ALL +C+    +E+GE+A+  +  L   
Sbjct: 344 CMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPD 403

Query: 241 -GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
            GG+YV+LSNMY    +WD    +R++M  KG++KS   SW+E+   +H F + D SHP+
Sbjct: 404 DGGNYVILSNMYAQAGKWDGVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPK 463

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           ++AI   L    +  K  G+ P    V  DV ++EK   +  HSE+LA+A+G++ TS GT
Sbjct: 464 SEAIYAELKRTGKLMKEAGYAPQVGSVFHDVEDDEKVDMVSCHSERLAIAFGLISTSAGT 523

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           ++ I KNLRIC DCH  IK IS++  R I +RD  R+H F+ G+CSCGD+W
Sbjct: 524 KLLIIKNLRICEDCHVAIKFISKITEREITIRDVNRYHHFKDGVCSCGDFW 574



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 115/216 (53%), Gaps = 2/216 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +++  WN MI G+  N  ++ A+  + +M    + PDKFTF  V+  C+ L A+     +
Sbjct: 65  RNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKI 124

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I   +E +  + AALIDMY+KCG ++ A++VFD +   DV  WN+M++  + +G  
Sbjct: 125 HKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQP 184

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            ++ A+   M    + P   TF+  + A +  GL+ +G++   +   R+  +   +   A
Sbjct: 185 DESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGY-SWRHGFESNDKVKTA 243

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++D+  ++G +  A  L   +  E  VV W A+++ 
Sbjct: 244 LMDMYAKSGSVNVARSLF-ELLEEKRVVSWNAMITG 278



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 94/177 (53%), Gaps = 4/177 (2%)

Query: 44  FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           +AS++  C    A+     +H  I +  I  N +L+  L+++Y  C  +  A  +FD + 
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 104 RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
           + ++ +WN MI G A +G    A +++ +M  + ++PD  TF  +L ACS    +EEG+K
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 164 -YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            + D +RS   ++  +    A++D+  + G +E A  +   +  E DVV W ++L+ 
Sbjct: 124 IHKDVIRS--GLESDVFVGAALIDMYAKCGCVESARQVFDKID-ERDVVCWNSMLAT 177



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + +K VVSWN+MI G+  +   +EAL  F+EM   KV PD  TF  V+  C+  G LN  
Sbjct: 264 LEEKRVVSWNAMITGYAMHGHANEALDLFKEM-KGKVLPDHITFVGVLAACSHGGLLNEG 322

Query: 61  YW-VHNLIIEKKIELNFILSAALIDMYSKCGKIQMA-KEVFDTVQRNDVSVWNAMISGVA 118
                ++I +  I         +ID+   CG+++ A K + +     D  VW A++    
Sbjct: 323 KMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCK 382

Query: 119 IHG 121
           IHG
Sbjct: 383 IHG 385


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 175/414 (42%), Positives = 250/414 (60%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D  +W++MI  + +N    EAL  FREML   + P+  +F S++  CA L   ++ 
Sbjct: 293 MCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYG 352

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  ++    + +    +ALI MY KCG +  AK VF+  +  DV +WN+MI+G A H
Sbjct: 353 RELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQH 412

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  IF  + +  + PD IT++G+LTACS+ G V+EGR+ F+ M    SI+    H
Sbjct: 413 GLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAH 472

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  MVDLLGRAG ++EA  LI +M +EPD ++W AL+ ACR  K  E+ EVA   +  L 
Sbjct: 473 YSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMHKNAEIAEVAAKKLLELE 532

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD-RS 296
               G YVLLS++Y    RW+ A ++R+ +  + + KS G SW+E   ++H F +GD  S
Sbjct: 533 PGSAGPYVLLSHIYTSTGRWEDASDMRKFISSRNLNKSPGCSWIEYNKMVHLFTSGDVLS 592

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HPE   I  +L  L       G+      VL DV EE+K  +L +HSE+ A+AYG+LK  
Sbjct: 593 HPEHAIILNMLEELDGLLMESGYSADGSFVLHDVDEEQKAQSLRYHSERQAVAYGLLKVP 652

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  IR+ KNLR+C DCHS IK+I+++  R II+RD  RFH F+ GLCSC DYW
Sbjct: 653 AGMPIRVMKNLRVCGDCHSAIKLITKITSREIILRDANRFHHFKDGLCSCRDYW 706



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 122/264 (46%), Gaps = 44/264 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPDKDVV+  +M+ G+ +  R  EA   F EM    V     ++ ++I G A+ G +  A
Sbjct: 169 MPDKDVVARTAMLSGYCQAGRITEARALFDEMPKRNV----VSWTAMISGYAQNGKVILA 224

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +  ++ ++    N +   A++  Y + G ++ A+++F+ +  + V+  NAM+ G   H
Sbjct: 225 RKLFEVMPDR----NEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQH 280

Query: 121 GLAADASAIFTKM-----------------------------EMF--NVLPDSITFLGLL 149
           G+   A A+F +M                             EM    + P+  +F+ +L
Sbjct: 281 GMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISIL 340

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
           T C+     + GR+    M  R S    +    A++ +  + G++++A   + +M    D
Sbjct: 341 TVCAALATADYGRELHAAML-RCSFDTDVFAVSALITMYIKCGNLDKA-KRVFNMFEPKD 398

Query: 210 VVVWRALLSACRTFKRLELGEVAI 233
           VV+W ++++    + +  LGE A+
Sbjct: 399 VVMWNSMITG---YAQHGLGEEAL 419



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 100/214 (46%), Gaps = 22/214 (10%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           VVS+ S++ G+VR+    +A+R F +M     E +  T+  ++ G    G +N A  + +
Sbjct: 112 VVSFTSLLRGYVRHGLLADAIRLFHQM----PERNHVTYTVLLGGFLDAGRVNEARKLFD 167

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
            + +K +    +   A++  Y + G+I  A+ +FD + + +V  W AMISG A +G    
Sbjct: 168 EMPDKDV----VARTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNG---- 219

Query: 126 ASAIFTKMEMFNVLPD--SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
              +    ++F V+PD   +++  +L      G VE+    F+ M         +    A
Sbjct: 220 --KVILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDH-----PVAACNA 272

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           M+   G+ G ++ A  +   M    D   W A++
Sbjct: 273 MMVGFGQHGMVDAAKAMFERMCARDD-GTWSAMI 305



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 99/209 (47%), Gaps = 17/209 (8%)

Query: 1   MPDKDVVSWNSMIGGF-VRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           MP +D+ S+N++I G  +R     +A      + S  + P   +F S++ G  R G L  
Sbjct: 74  MPSRDLGSYNALIAGLSLRRHTLPDAA---AALASIPLPPSVVSFTSLLRGYVRHGLLAD 130

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
           A  + + + E+    N +    L+  +   G++  A+++FD +   DV    AM+SG   
Sbjct: 131 AIRLFHQMPER----NHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQ 186

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            G   +A A+F +M   NV    +++  +++  +  G V   RK F+ M  R  +     
Sbjct: 187 AGRITEARALFDEMPKRNV----VSWTAMISGYAQNGKVILARKLFEVMPDRNEVS---- 238

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
            + AM+    +AGH+E+A  L  +M   P
Sbjct: 239 -WTAMLVGYIQAGHVEDAEDLFNAMPDHP 266



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 110/237 (46%), Gaps = 30/237 (12%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFA--SVIYGCARLGALN 58
           MP+++ V++  ++GGF+   R +EA + F EM      PDK   A  +++ G  + G + 
Sbjct: 138 MPERNHVTYTVLLGGFLDAGRVNEARKLFDEM------PDKDVVARTAMLSGYCQAGRIT 191

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGV 117
            A      + ++  + N +   A+I  Y++ GK+ +A+++F+ +  RN+VS W AM+ G 
Sbjct: 192 EA----RALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDRNEVS-WTAMLVGY 246

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFL--GLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
              G   DA       ++FN +PD        ++      G+V+  +  F+ M +R    
Sbjct: 247 IQAGHVEDAE------DLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDD-- 298

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELG 229
                + AM+ +  +   + EA      M    + P+   + ++L+ C      + G
Sbjct: 299 ---GTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYG 352


>gi|357111278|ref|XP_003557441.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Brachypodium distachyon]
          Length = 551

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 176/432 (40%), Positives = 263/432 (60%), Gaps = 24/432 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-----LSSKVEPDKFTFASVIYGCARLG 55
           +P K +VSWN+ +     N     AL  FRE+      ++ + PD +T  SV+  CA  G
Sbjct: 122 IPAKSLVSWNTAVDALAGNGDHIAALDLFRELQLEGAATAGLAPDAYTVQSVLGACAGAG 181

Query: 56  ALNHAYWVHNLIIE--------KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDV 107
           AL+   + H L++         + +  + +++ +L+D+Y KCG +++A++VFD +   D+
Sbjct: 182 ALSLGVYAHALLLRELGGDGDGQAVSRDVLINNSLVDLYGKCGAVELARQVFDRMPERDI 241

Query: 108 SVWNAMISGVAIHGLAADASAIFTKM---EMFNVLPDSITFLGLLTACSHCGLVEEGRKY 164
           + WN MI  +A HG   ++  +F +M   E F  +P++ITF+ +L+AC+H G+VEEGR+Y
Sbjct: 242 TSWNVMILTLANHGRVRESVELFDRMARAEKF--VPNAITFVAVLSACNHGGMVEEGRRY 299

Query: 165 FDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA-CRTF 223
           F  M S Y I+P++EHYG MVD+L RAG IEEA  +++ M   PD ++WR+LL A C+  
Sbjct: 300 FQMMVSEYGIRPRIEHYGCMVDILARAGFIEEALDVVSGMNCRPDAIIWRSLLDACCKQN 359

Query: 224 KRLELGE----VAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKS 279
             LEL E    +A+      + G YVLLS +Y   +RW+    VR +M+++G++K  G S
Sbjct: 360 AGLELSEAMAKLALDVPDDAVSGVYVLLSQVYASAQRWNDVGMVRRLMREEGLKKEPGFS 419

Query: 280 WLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEG-N 338
            +E+ G++HQF AGD SHP  + I K L  + QR  S G+ P      M    +  +G  
Sbjct: 420 SIEMDGLVHQFVAGDTSHPLTEEIYKKLDEIEQRLTSSGYKPNLSAAPMVAGIDHAKGAA 479

Query: 339 LYHHSEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHR 398
           L  HSE+LA+++G+LK + G  IRI KNLR+C DCH+  K+IS L    IIVRDRIRFH 
Sbjct: 480 LRLHSERLAISFGLLKATDGAPIRILKNLRVCKDCHTISKIISELYGVEIIVRDRIRFHH 539

Query: 399 FEGGLCSCGDYW 410
           F+ G CSC DYW
Sbjct: 540 FKDGACSCKDYW 551



 Score = 42.0 bits (97), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 41/205 (20%), Positives = 74/205 (36%), Gaps = 57/205 (27%)

Query: 77  ILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEM- 135
           +++ +L+ +Y+ CG    A  +F  +    +  WN  +  +A +G    A  +F ++++ 
Sbjct: 97  VVANSLLHLYASCGLPAAALALFRRIPAKSLVSWNTAVDALAGNGDHIAALDLFRELQLE 156

Query: 136 ----FNVLPDSITFLGLLTACS-------------------------------------- 153
                 + PD+ T   +L AC+                                      
Sbjct: 157 GAATAGLAPDAYTVQSVLGACAGAGALSLGVYAHALLLRELGGDGDGQAVSRDVLINNSL 216

Query: 154 -----HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME- 207
                 CG VE  R+ FD M  R      +  +  M+  L   G + E+  L   M    
Sbjct: 217 VDLYGKCGAVELARQVFDRMPER-----DITSWNVMILTLANHGRVRESVELFDRMARAE 271

Query: 208 ---PDVVVWRALLSACRTFKRLELG 229
              P+ + + A+LSAC     +E G
Sbjct: 272 KFVPNAITFVAVLSACNHGGMVEEG 296


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  340 bits (873), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 175/412 (42%), Positives = 248/412 (60%), Gaps = 6/412 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K+VVSW SM+   V+N   + A   F +    +VEP  F  +SV+  CA LG L     V
Sbjct: 274 KNVVSWCSMLAALVQNHEEERACMVFLQA-RKEVEPTDFMISSVLSACAELGGLELGRSV 332

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H L ++  +E N  + +AL+DMY KCG I+ A++VF  +   ++  WNAMI G A  G  
Sbjct: 333 HALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSELPERNLVTWNAMIGGYAHQGDI 392

Query: 124 ADASAIFTKMEM--FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
             A  +F +M +    + P  +T + +L+ CS  G VE G + F+ MR  Y I+P  EH+
Sbjct: 393 DMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNYGIEPGAEHF 452

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISR 238
             +VDLLGR+G ++ AY  I +M ++P + VW ALL ACR   + ELG++A   +  +  
Sbjct: 453 ACVVDLLGRSGLVDRAYEFIQNMAIQPTISVWGALLGACRMHGKTELGKIAAEKLFELDH 512

Query: 239 LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
           +  G++V+LSNM     RW+ A  VR+ MK  G++K+ G SW+ +   IH F+A D SH 
Sbjct: 513 VDSGNHVVLSNMLASAGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNRIHVFQAKDSSHD 572

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
               I  +LG L    K  G++P T L L D+ +EEK   +++HSEK+ALA+G++    G
Sbjct: 573 RNSEIQAMLGKLRGGMKEAGYVPDTNLSLFDLEDEEKASEVWYHSEKIALAFGLIALPQG 632

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             IRI+KNLRIC DCHS IK ISR++ R IIVRD  RFHRF+ G CSC DYW
Sbjct: 633 VPIRITKNLRICGDCHSAIKFISRIVGREIIVRDNHRFHRFKDGCCSCKDYW 684



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 116/244 (47%), Gaps = 14/244 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +++ +WN+ I   V++ R  +A+  F+E L    EP+  TF + +  C  +  LN  
Sbjct: 169 MPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLG 228

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAI 119
             +H  I+    + +  ++  LID Y KCG I  A+ VF+ +  R +V  W +M++ +  
Sbjct: 229 RQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQ 288

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +     A  +F +     V P       +L+AC+  G +E GR     +  +  ++  + 
Sbjct: 289 NHEEERACMVFLQARK-EVEPTDFMISSVLSACAELGGLELGRS-VHALAVKACVEDNIF 346

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS----------ACRTFKRLELG 229
              A+VD+ G+ G IE A  + + +  E ++V W A++           A R F+ + LG
Sbjct: 347 VGSALVDMYGKCGSIENAEQVFSELP-ERNLVTWNAMIGGYAHQGDIDMALRLFEEMTLG 405

Query: 230 EVAI 233
              I
Sbjct: 406 SHGI 409



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 1/216 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           + VV+W S+I G V N RF  AL  F  M    V+P+ FTF  V    A +        +
Sbjct: 71  RTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIPMTGKQI 130

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H L ++  +  +  +  +  DMY K G    A  +FD + + +++ WNA IS       +
Sbjct: 131 HGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRS 190

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            DA   F +    +  P+SITF   L AC     +  GR+    +  R   +  +     
Sbjct: 191 LDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLGRQLHAFI-VRCGYKEDVSVANG 249

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++D  G+ G I  A  +   +    +VV W ++L+A
Sbjct: 250 LIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAA 285



 Score = 42.4 bits (98), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 4/119 (3%)

Query: 45  ASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR 104
           ++V   C+ LG   HA+ +   +      L   LS  L++MYSK   +  A+ V      
Sbjct: 15  SAVSTHCSILGRTIHAHIIRTHVTP----LPSFLSNHLVNMYSKLDLLNSAQHVLSLTHL 70

Query: 105 NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
             V  W ++ISG   +     A   FT M   NV P+  TF  +  A +   +   G++
Sbjct: 71  RTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIPMTGKQ 129


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  340 bits (873), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 171/414 (41%), Positives = 254/414 (61%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +++ +W+ MI G+ +N  F++A+  F  M    V  ++    SVI  CA LGAL   
Sbjct: 211 MPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGALEFG 270

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H  +++  + +N IL  AL+DMY +CG+I+ A  VF+ +   D   W+++I G+A+H
Sbjct: 271 ERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVH 330

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A  A   F++M      P  IT   +L+ACSH GLV++G + +++M+  Y I+P+LEH
Sbjct: 331 GHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEH 390

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG +VD+LGRAG + EA   I  M ++P+  +  ALL AC+ +K  E+ E     ++ + 
Sbjct: 391 YGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVAERVGNMLIEVK 450

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG-DRS 296
               G YVLLSN+Y    +W+  E++R+IMK+K V+K  G S +E+ G I++F  G D+ 
Sbjct: 451 PEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIEIDGKINKFSMGDDQK 510

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HPE   I ++   ++ + +  G+   T     DV EEEKE  ++ HSEKLA+AYG++KT 
Sbjct: 511 HPEMGKIKRLWEEILGKIRLIGYKGNTGDAFFDVDEEEKETAIHMHSEKLAIAYGMMKTK 570

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            GT IRI KNLR+C DCH+  K+IS +  R  IVRDR RFH F  GLCSC DYW
Sbjct: 571 TGTTIRIVKNLRVCEDCHTATKLISEVYGREFIVRDRNRFHHFRNGLCSCRDYW 624



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 108/249 (43%), Gaps = 35/249 (14%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + ++  +N +I  F   A   +A  F+ +ML S++ PD  TF  +I     +  +     
Sbjct: 81  NPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVVVGEQ 140

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            H+ I+    + +  +  +L+ MY+ CG I  A  +F  +   DV  W +M++G    G+
Sbjct: 141 THSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGM 200

Query: 123 AADASAIFTKMEMFNVLPDSITFLG-------------------------------LLTA 151
             DA  +F +M   N+   SI   G                               ++++
Sbjct: 201 VEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISS 260

Query: 152 CSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
           C+H G +E G +  ++ ++S  ++   L    A+VD+  R G IE+A  +   +  + D 
Sbjct: 261 CAHLGALEFGERAHEYVVKSHMTVNLILG--TALVDMYWRCGEIEKAIRVFEELP-DKDS 317

Query: 211 VVWRALLSA 219
           + W +++  
Sbjct: 318 LSWSSIIKG 326



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 42/205 (20%), Positives = 87/205 (42%), Gaps = 4/205 (1%)

Query: 95  AKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
           A  +F  +Q  ++ V+N +I   +     + A   +T+M    + PD+ITF  L+ A + 
Sbjct: 72  AYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTE 131

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
              V  G +    +  R+  Q  +    ++V +    G I  A  +   M    DVV W 
Sbjct: 132 MECVVVGEQTHSQI-VRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFR-DVVSWT 189

Query: 215 ALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRK 274
           ++++       +E        +       + ++ N Y     ++ A ++ E+MK++GV  
Sbjct: 190 SMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVA 249

Query: 275 SQGKSWLELAGVIH--QFKAGDRSH 297
           ++      ++   H    + G+R+H
Sbjct: 250 NETVMVSVISSCAHLGALEFGERAH 274


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  340 bits (873), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 170/409 (41%), Positives = 249/409 (60%), Gaps = 4/409 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K+ VSWN++I GF R    +  L  F EM  +  E   FT++SV    A +GAL    WV
Sbjct: 229 KNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWV 288

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I+    L+  +   ++DMY+K G +  A++VFD V + DV  WN+M++  A +GL 
Sbjct: 289 HAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLG 348

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A   F +M    V  + ITFL +LTACSH GLV+EG++YFD M+  Y+++P+++HY  
Sbjct: 349 REAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMK-EYNLEPEIDHYVT 407

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD 243
           +VDLLGRAG + +A   I  M M+P   VW ALL +CR  K  ++G+ A  ++  L   D
Sbjct: 408 VVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDD 467

Query: 244 Y---VLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
               VLL N+Y    +WD A  VR++MK  GV+K    SW+E+   +H F A D +HP +
Sbjct: 468 TGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRS 527

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + I K    +  + +  G++P T+ VL+ V E+E++  L +HSEK+ALA+ ++    G  
Sbjct: 528 EEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGAT 587

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDY 409
           IRI KN+RIC DCHS  + IS++ +R I+VRD  RFH F  G CSCGDY
Sbjct: 588 IRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDY 636



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 123/240 (51%), Gaps = 7/240 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+ SW S+I G+ +N   DEAL     ML  + +P+ FTFAS++       +    
Sbjct: 125 MPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIG 184

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L ++     +  + +AL+DMY++CG++ MA  VFD ++  +   WNA+I+G A  
Sbjct: 185 EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARK 244

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLE 179
           G       +F +M+         T+  + +A +  G +E+G+    HM +S   +   + 
Sbjct: 245 GDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVG 304

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           +   ++D+  ++G + +A  +   +  + DVV W ++L+A   F +  LG  A+ +   +
Sbjct: 305 N--TILDMYAKSGSMIDARKVFDRVD-KKDVVTWNSMLTA---FAQYGLGREAVTHFEEM 358



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 5/196 (2%)

Query: 44  FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           + S+I  CAR  +L+ A  +H  +   +   +  L  +LI +Y KCG +  A+ VFD + 
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 104 RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
             D+  W ++I+G A + +  +A  +   M      P+  TF  LL A         G +
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 164 YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTF 223
               +  +Y     +    A++D+  R G ++ A  +   +  + + V W AL++    F
Sbjct: 187 -IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESK-NGVSWNALIAG---F 241

Query: 224 KRLELGEVAIVNISRL 239
            R   GE  ++  + +
Sbjct: 242 ARKGDGETTLLMFAEM 257


>gi|218196348|gb|EEC78775.1| hypothetical protein OsI_19008 [Oryza sativa Indica Group]
          Length = 580

 Score =  340 bits (873), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 172/421 (40%), Positives = 252/421 (59%), Gaps = 16/421 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM------LSSKVEPDKFTFASVIYGCARL 54
           M  +DV +WNS++ G  +    + AL  F  +      L S+ EP++ T  + +  CA++
Sbjct: 165 MTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSACAQI 224

Query: 55  GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV--WNA 112
           G L    +VH       ++ N  +  +LIDMYSKCG +  A +VF +++  D ++  +NA
Sbjct: 225 GLLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDRTLVSYNA 284

Query: 113 MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY 172
            I   ++HG   DA  +F +M    + PD +T+L +L  C+H GLV++G + F+ MR   
Sbjct: 285 AIQAHSMHGHGGDALRLFDEMPT-RIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMR--- 340

Query: 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA 232
            + P ++HYG +VDLLGRAG + EAY  + SM    D+V+W+ LL A +    +EL E+A
Sbjct: 341 -VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELA 399

Query: 233 IVNISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQ 289
              ++ L   + GDYVLLSN+Y    RW     VR+ M+   VRK  G S+ E+ GV+H+
Sbjct: 400 ANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHK 459

Query: 290 FKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALA 349
           F  GD+ HP  Q I + L  ++ R    G+ P T  VL D+ EEEK+  L +HSEKLA+A
Sbjct: 460 FINGDKEHPRWQEIYRALEDIVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEKLAIA 519

Query: 350 YGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDY 409
           +G++ T PG  +R+ KNLRIC DCH   K+IS+   RVI++RDR RFHRFE G CSC DY
Sbjct: 520 FGLIATPPGETLRVIKNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRDY 579

Query: 410 W 410
           W
Sbjct: 580 W 580



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 88/180 (48%), Gaps = 7/180 (3%)

Query: 39  PDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEV 98
           PD  + +  +   AR    +    +H L++   +  +  L   L+D Y+KCG +  A++V
Sbjct: 102 PDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKV 161

Query: 99  FDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM-EMFNVL-----PDSITFLGLLTAC 152
           FD +   DV+ WN++++G+A       A A+F ++   F  L     P+ +T +  L+AC
Sbjct: 162 FDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSAC 221

Query: 153 SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
           +  GL+++G  Y      R+ +   +    +++D+  + G +  A  +  S+  E   +V
Sbjct: 222 AQIGLLKDG-MYVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDRTLV 280


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  340 bits (873), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 169/413 (40%), Positives = 250/413 (60%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  K+ VSWN++I GF R    +  L  F EM  +  E   FT++SV    A +GAL   
Sbjct: 102 LESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQG 161

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH  +I+    L+  +   ++DMY+K G +  A++VFD V + D+  WN+M++  A +
Sbjct: 162 KWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQY 221

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A   F +M    V  + ITFL +LTACSH GLV+EG++YFD M+  ++++P+++H
Sbjct: 222 GLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMK-EHNLEPEIDH 280

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  +VDLLGRAG + +A   I  M M+P   VW ALL +CR  K  ++G+ A  ++  L 
Sbjct: 281 YVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELD 340

Query: 241 GGDY---VLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D    VLL N+Y    +WD A  VR++MK  GV+K    SW+E+   +H F A D +H
Sbjct: 341 PDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTH 400

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P ++ I K    +  + +  G++P T+ VL+ V E+E++  L +HSEK+ALA+ ++    
Sbjct: 401 PRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPL 460

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KN+RIC DCHS  + IS++  R I+VRD  RFH F  G CSCGDYW
Sbjct: 461 GATIRIMKNIRICGDCHSAFRYISKVFEREIVVRDTNRFHHFSSGSCSCGDYW 513



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 122/240 (50%), Gaps = 7/240 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D+ SW S+I G+ +N   DEAL     ML  + +P+ FTFAS++       +    
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L ++     +  + +AL+DMY++CG++ MA  VFD ++  +   WNA+I+G A  
Sbjct: 61  EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARK 120

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLE 179
           G       +F +M+         T+  + +A +  G +E+G+    HM +S   +   + 
Sbjct: 121 GDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVG 180

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           +   ++D+  ++G + +A  +   +  + D+V W ++L+A   F +  LG  A+ +   +
Sbjct: 181 N--TILDMYAKSGSMIDARKVFDHVD-KKDLVTWNSMLTA---FAQYGLGREAVTHFEEM 234


>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Glycine max]
          Length = 579

 Score =  340 bits (873), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 173/415 (41%), Positives = 246/415 (59%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSS--KVEPDKFTFASVIYGCARLGALN 58
           MP +D V+WN MI   +RN R  +AL  F  M  S  K EPD  T   ++  CA L AL 
Sbjct: 165 MPHRDTVAWNVMISCCIRNNRTRDALSLFDVMQGSSYKCEPDDVTCLLLLQACAHLNALE 224

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H  I+E+       L  +LI MYS+CG +  A EVF  +   +V  W+AMISG+A
Sbjct: 225 FGERIHGYIMERGYRDALNLCNSLISMYSRCGCLDKAYEVFKGMGNKNVVSWSAMISGLA 284

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           ++G   +A   F +M    VLPD  TF G+L+ACS+ G+V+EG  +F  M   + + P +
Sbjct: 285 MNGYGREAIEAFEEMLRIGVLPDDQTFTGVLSACSYSGMVDEGMSFFHRMSREFGVTPNV 344

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
            HYG MVDLLGRAG +++AY LI SM ++PD  +WR LL ACR    + LGE  I ++  
Sbjct: 345 HHYGCMVDLLGRAGLLDKAYQLIMSMVVKPDSTMWRTLLGACRIHGHVTLGERVIGHLIE 404

Query: 239 LM---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L     GDYVLL N+Y     W+    VR++MK K ++ + G S +EL G +H+F   D 
Sbjct: 405 LKAQEAGDYVLLLNIYSSAGHWEKVAEVRKLMKNKSIQTTPGCSTIELKGAVHEFVVDDV 464

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SH   + I + L  +  + +  G++      L  + ++EK   L HHSEKLA+A+G+L T
Sbjct: 465 SHSRNREIYETLDEINHQLRIAGYVVELSSELHKMDDKEKGYVLSHHSEKLAVAFGVLAT 524

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            PGT +R++ NLR+C DCH+++K+ S +  R +++RD  RFH F GG CSC DYW
Sbjct: 525 PPGTILRVASNLRVCVDCHNFLKLFSGVYNRDVVLRDHNRFHHFRGGRCSCSDYW 579



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 4/216 (1%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           V  +N+MI     +    + L  +R+M    +  D  + +  +  C R   L     VH 
Sbjct: 69  VSHYNTMIRACSMSDSPQKGLLLYRDMRRRGIAADPLSSSFAVKSCIRFLYLPGGVQVHC 128

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
            I +   + + +L  A++D+YS C +   A +VFD +   D   WN MIS    +    D
Sbjct: 129 NIFKDGHQWDTLLLTAVMDLYSLCQRGGDACKVFDEMPHRDTVAWNVMISCCIRNNRTRD 188

Query: 126 ASAIFTKME--MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
           A ++F  M+   +   PD +T L LL AC+H   +E G +   ++  R   +  L    +
Sbjct: 189 ALSLFDVMQGSSYKCEPDDVTCLLLLQACAHLNALEFGERIHGYIMER-GYRDALNLCNS 247

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++ +  R G +++AY +   M    +VV W A++S 
Sbjct: 248 LISMYSRCGCLDKAYEVFKGMG-NKNVVSWSAMISG 282


>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
 gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  340 bits (873), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 179/424 (42%), Positives = 258/424 (60%), Gaps = 15/424 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNH 59
           MP+++ V W  MI G+V N    E      EM L  ++  +  T +S++  CA+ G +  
Sbjct: 214 MPERNEVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRLGLNFVTLSSILSACAQSGDVLM 273

Query: 60  AYWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
             WVH   ++    E++ ++  AL+DMY+KCG I MA +VF  + + +V  WNAM+ G+A
Sbjct: 274 GRWVHVYALKGMGREMHIMVGTALVDMYAKCGPIDMAFKVFKYLPKRNVVAWNAMLGGLA 333

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG       IF KM +    PD +TF+ +L+ACSH GLV++G  YF  + S Y   P++
Sbjct: 334 MHGRGKFVLDIFPKM-IEEAKPDDLTFMAVLSACSHSGLVDQGYHYFRSLESEYGTTPKI 392

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           EHY  MVD+LGRAGH+EEA  LI  M M P+ VV  +LL +C    +L+LGE  +  + +
Sbjct: 393 EHYACMVDILGRAGHLEEAVMLIKKMPMCPNEVVLGSLLGSCNAHGKLQLGERILQELIQ 452

Query: 239 LMGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           + G +   +VLLSNMY    + D A ++R+I+K KG+RK  G S + + G IHQF AGD+
Sbjct: 453 MDGHNTEYHVLLSNMYVLEGKQDKANSLRQILKSKGIRKVPGVSSIYVGGNIHQFSAGDK 512

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSE---------EEKEGNLYHHSEKL 346
           SHP  + I   L ++IQR +  G++P T   +   S+         EEKE  L+ HSEKL
Sbjct: 513 SHPLTKEIYHALNNMIQRLRLAGYVPNTTNQVFPGSDGREGSSEEMEEKEQALFLHSEKL 572

Query: 347 ALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSC 406
           A+ +G + T PG  + I KNLRIC DCHS IK++S++  R I++RDR RFH F+ G CSC
Sbjct: 573 AVCFGHISTKPGAPLYIFKNLRICQDCHSAIKIVSKIYNREIVIRDRNRFHCFKHGSCSC 632

Query: 407 GDYW 410
            DYW
Sbjct: 633 SDYW 636



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 103/250 (41%), Gaps = 36/250 (14%)

Query: 4   KDVVSWNSMIGGFVRNA-RFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           KDV  W +++   V++  +  E   FF+EM    V  D     SV   C R+  L     
Sbjct: 84  KDVTDWTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVLDDVAMISVFVLCTRVEDLGMGRQ 143

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF----------------------- 99
               +++  + L   +  A+++MY KCG ++  + VF                       
Sbjct: 144 AQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNERNVVSWSTLLEGVVKWEG 203

Query: 100 ---------DTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEM-FNVLPDSITFLGLL 149
                    +  +RN+V  W  MI+G   +G + +   +  +M + F +  + +T   +L
Sbjct: 204 VENGRVVFDEMPERNEVG-WTIMIAGYVGNGFSREGFLLLDEMVLRFRLGLNFVTLSSIL 262

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
           +AC+  G V  GR    +       +  +    A+VD+  + G I+ A+ +   +  + +
Sbjct: 263 SACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVDMYAKCGPIDMAFKVFKYLP-KRN 321

Query: 210 VVVWRALLSA 219
           VV W A+L  
Sbjct: 322 VVAWNAMLGG 331


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  340 bits (872), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 175/427 (40%), Positives = 248/427 (58%), Gaps = 21/427 (4%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSK-----------------VEPDKFTFASV 47
           +VVSW+++I  F +     E L  FREM   +                 V+P+ FT +  
Sbjct: 113 NVVSWSAVIAAFAQRGLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCA 172

Query: 48  IYGCARLGALNHAYWVHNLIIEKKIELNFILSA-ALIDMYSKCGKIQMAKEVFDTVQRND 106
           +  CARL AL     +H  I+    +  F+  A  LIDMY+K G I +A+ VFD +++ +
Sbjct: 173 LIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKN 232

Query: 107 VSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD 166
              W ++++G  +HG   +A  +F +M    + PD +T L +L ACSH G++++G ++F+
Sbjct: 233 FVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFN 292

Query: 167 HMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRL 226
            M   + + P  EHY  MVDLLGRAG + EA  LI  M MEP  +VW ALLS CR    +
Sbjct: 293 SMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANV 352

Query: 227 ELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLEL 283
           ELGE A   ++ ++    G Y LLSN+Y   +RW     VR +MK  G+RK  G SW++ 
Sbjct: 353 ELGEHAAKQLLELNSENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQG 412

Query: 284 AGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHS 343
                 F   D++HP+++ I +IL SL QR K  G++P T   L DV +EEK   L+ HS
Sbjct: 413 KKGTTTFYVADKTHPQSKQIYEILRSLTQRIKVLGYVPETSFALHDVDDEEKVDLLFEHS 472

Query: 344 EKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGL 403
           EKLALAYGIL ++PG  IRI+KNLR+C DCH+ I  IS ++   II+RD  RFH F+ G 
Sbjct: 473 EKLALAYGILISAPGAPIRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGS 532

Query: 404 CSCGDYW 410
           CSC  YW
Sbjct: 533 CSCSGYW 539



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 70/133 (52%)

Query: 37  VEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAK 96
           + PD  +  +V+  CA +GA  H   VH + +      +  +  AL+DMY+KCG +  A 
Sbjct: 9   MRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEAS 68

Query: 97  EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
           +VFD ++  DV  WNAM++G +  G   DA  +F KM   N+  + +++  ++ A +  G
Sbjct: 69  KVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRG 128

Query: 157 LVEEGRKYFDHMR 169
           L  E    F  M+
Sbjct: 129 LGCETLDVFREMQ 141



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 8/126 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  K+ VSW S++ G+  + R  EAL  F EM    ++PD  T   V+Y C+  G ++  
Sbjct: 228 LKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQG 287

Query: 61  YWVHNLIIEKKIELNFILS----AALIDMYSKCGKIQMAKEVFDTVQRNDVS-VWNAMIS 115
               N + +   E   I      A ++D+  + G++  A E+ + +Q    S VW A++S
Sbjct: 288 IEFFNSMSK---EFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLS 344

Query: 116 GVAIHG 121
           G  IH 
Sbjct: 345 GCRIHA 350


>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  340 bits (872), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 166/415 (40%), Positives = 260/415 (62%), Gaps = 6/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+V+WN+MI  F +     EAL+ + +M S  V+ D FT   +I  CA LGALN  
Sbjct: 166 MPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENVDIDGFTLVGLISSCAHLGALNIG 225

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H    E  ++ +  +  ALIDMY+KCG +  A  +FD +QR D+  WN+MI G  +H
Sbjct: 226 VQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVH 285

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  ++A   F +M    + P+ +TFLGLL  CSH GLV+EG KYF+ M S++ ++P+++H
Sbjct: 286 GRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKH 345

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG +VDL GRAG +++A  ++++ +   D V+WR LL +C+  K + +GE+A+  +S L 
Sbjct: 346 YGCLVDLYGRAGKLDKALEIVSN-SSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELG 404

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               GD +LL+ +Y   K       +R+++K +G + + G SW+E+   +H+F   D+SH
Sbjct: 405 ATSAGDCILLATIYAGEKDKAGVARMRKMIKSQGKKTTPGWSWIEIGEQVHKFVVDDKSH 464

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDV--SEEEKEGNLYHHSEKLALAYGILKT 355
             +  + + L  +I +    G++    +  +D+  + E  + +  +HSEKLA+A+G+ +T
Sbjct: 465 RYSVEVYEKLREVIHQASFFGYVGDESISSLDMLSTMETLKTSCTYHSEKLAIAFGLART 524

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + GT+IRI KNLR+C DCHS+IK +S    R IIVRDR+RFH F+GG CSC DYW
Sbjct: 525 ADGTQIRIVKNLRVCRDCHSFIKAVSVAFNREIIVRDRVRFHHFKGGECSCNDYW 579



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 108/211 (51%), Gaps = 3/211 (1%)

Query: 8   SWNSMIGGFVRNARFDEALRFFREMLSSKVE-PDKFTFASVIYGCARLGALNHAYWVHNL 66
           +WNS+I GF +++   +A+ F+ +M+      PD FTF+ V+  C R+ A      VH  
Sbjct: 71  AWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKEVHGS 130

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           +I    + + I+   L+  YS  G + +A++VFD +   D+  WNAMIS  +  GL  +A
Sbjct: 131 VIRCGYDADVIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQEA 190

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186
              + +M   NV  D  T +GL+++C+H G +  G +     R    +   L    A++D
Sbjct: 191 LQTYNQMRSENVDIDGFTLVGLISSCAHLGALNIGVQMHRFAREN-GLDQSLYVGNALID 249

Query: 187 LLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           +  + G +++A  LI       D+  W +++
Sbjct: 250 MYAKCGSLDQAI-LIFDRMQRKDIFTWNSMI 279


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  340 bits (872), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 168/411 (40%), Positives = 255/411 (62%), Gaps = 4/411 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           +P KD +SWN+++ G+ +N    EA+  +  M   +   P++ T+ S+I   + +GAL  
Sbjct: 385 LPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQ 444

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  +I+  + L+  ++  LID+Y KCG+++ A  +F  + R+    WNA+I+ + I
Sbjct: 445 GMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGI 504

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +A  +F  M    V  D ITF+ LL+ACSH GLV+EG+K FD M+  Y I+P L+
Sbjct: 505 HGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLK 564

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HYG MVDLLGRAG++E+AY L+ +M ++PD  +W ALLSAC+ +   ELG +A   ++ +
Sbjct: 565 HYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEV 624

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVLLSN+Y   ++W+    VR + + +G+RK+ G S + +      F  G+++
Sbjct: 625 DSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQT 684

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+   I K L  L  + KS G++P    V  D+ E+EKE  L  HSE+LA+A+GI+ T 
Sbjct: 685 HPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTP 744

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCG 407
           P + IRI KNLR+C DCH+  K ISR+  R I+VRD  RFH F+ G+CSC 
Sbjct: 745 PRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDGICSCA 795



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 118/221 (53%), Gaps = 4/221 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D+VSWNS+I  + +N     ALRFF+ M    + PD  T  S+    ++L     +
Sbjct: 283 MEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRIS 342

Query: 61  YWVHNLIIEKK-IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             +   +I ++ ++ + ++  AL++MY+K G +  A  VFD + R D   WN +++G   
Sbjct: 343 RSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQ 402

Query: 120 HGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +GLA++A   +  M E  + +P+  T++ ++ A SH G +++G K    +  + S+   +
Sbjct: 403 NGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKL-IKNSLYLDV 461

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                ++DL G+ G +E+A  L   +  +   V W A++++
Sbjct: 462 FVATCLIDLYGKCGRLEDAMSLFYEIPRDTS-VPWNAIIAS 501



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 121/242 (50%), Gaps = 19/242 (7%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLS----SKVEPDKFTFASVIYGCARLGALNH 59
           K++ SWNS+I  +VR  ++ EA+    ++ S      + PD +TF  ++  C    +L  
Sbjct: 83  KNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV---SLVD 139

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              VH  + +   E +  ++A+L+ +YS+ G + +A +VF  +   DV  WNAMISG   
Sbjct: 140 GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQ 199

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G AA A  +  +M+   V  D+IT   +L  C+    V  G     H+  ++ +   + 
Sbjct: 200 NGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVL-KHGLDSDVF 258

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL----------SACRTFKRLELG 229
              A++++  + G +++A  +   M +  D+V W +++          +A R FK ++LG
Sbjct: 259 VSNALINMYSKFGRLQDAQMVFDQMEVR-DLVSWNSIIAAYEQNNDPSTALRFFKGMQLG 317

Query: 230 EV 231
            +
Sbjct: 318 GI 319



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 109/219 (49%), Gaps = 1/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KDV SWN+MI GF +N     AL     M    V+ D  T AS++  CA+   + + 
Sbjct: 182 MPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVING 241

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++  ++ +  +S ALI+MYSK G++Q A+ VFD ++  D+  WN++I+    +
Sbjct: 242 VLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQN 301

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
              + A   F  M++  + PD +T + L +  S        R     +  R  +   +  
Sbjct: 302 NDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVI 361

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A+V++  + G++  A+ +   +  + D + W  L++ 
Sbjct: 362 GNALVNMYAKLGYMNCAHTVFDQLPRK-DTISWNTLVTG 399



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 28/188 (14%)

Query: 44  FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           F ++   C  + A      +H L++      N +LS  LI++Y   G I +++  FD + 
Sbjct: 25  FNALFNSCVNVNATKK---LHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIH 81

Query: 104 RNDVSVWNAMISGVAIHGLAADA----SAIFTKMEMFNVLPDSITFLGLLTAC------- 152
           + ++  WN++IS     G   +A    + +F+     ++ PD  TF  +L AC       
Sbjct: 82  KKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVDGK 141

Query: 153 -SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
             HC + + G             +  +    ++V L  R G ++ A+ +   M ++ DV 
Sbjct: 142 KVHCCVFKMG------------FEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVK-DVG 188

Query: 212 VWRALLSA 219
            W A++S 
Sbjct: 189 SWNAMISG 196


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  340 bits (872), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 172/415 (41%), Positives = 250/415 (60%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA-LNH 59
           + +KD+V+W++M+ G+ +    + A++ F E+    V+P++FTF+S++  CA   A +  
Sbjct: 458 IDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQ 517

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
               H   I+ +++ +  +S+AL+ MY+K G I+ A+EVF   +  D+  WN+MISG A 
Sbjct: 518 GKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQ 577

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG A  A  +F +M+   V  DS+TF+G+  AC+H GLVEEG KYFD M     I P  E
Sbjct: 578 HGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKE 637

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           H   MVDL  RAG +E+A  +I +M       +WR +L+ACR  K+ ELG +A   I  +
Sbjct: 638 HNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAM 697

Query: 240 MGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
           +  D   YVLLSNMY     W     VR++M ++ V+K  G SW+E+    + F AGDRS
Sbjct: 698 IPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRS 757

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP    I   L  L  R K  G+ P T  VL D+ +E KE  L  HSE+LA+A+G++ T 
Sbjct: 758 HPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATP 817

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEG-GLCSCGDYW 410
            G+ + I KNLR+C DCH  IK+I+++  R I+VRD  RFH F   G+CSCGD+W
Sbjct: 818 KGSPLLIIKNLRVCGDCHVVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 137/300 (45%), Gaps = 40/300 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++VV+W ++I G+ RN+  +E L  F  M     +P+ FTFA+ +   A  G     
Sbjct: 158 MKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRG 217

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH ++++  ++    +S +LI++Y KCG ++ A+ +FD  +   V  WN+MISG A +
Sbjct: 218 LQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAAN 277

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACS-----------HCGLVEEGRKYFDHMR 169
           GL  +A  +F  M + +V     +F  ++  C+           HC +V+ G  +  ++R
Sbjct: 278 GLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIR 337

Query: 170 SRYSIQPQLEHYGAMVDLL------GRAGHI----------------EEAYGLITSMT-- 205
           +  ++        AM+D L      G  G++                EEA GL + M   
Sbjct: 338 T--ALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRK 395

Query: 206 -MEPDVVVWRALLSACRTFKRLEL-GEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENV 263
            + P+   +  +L+A       E+  +V   N  R       LL + Y  L + D A  V
Sbjct: 396 GVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALL-DAYVKLGKVDEAAKV 454



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 104/215 (48%), Gaps = 5/215 (2%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +VVSW +MI GF++N   +EA+  F EM    V P++FT++ ++     +        VH
Sbjct: 365 NVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISPSE----VH 420

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             +++   E +  +  AL+D Y K GK+  A +VF  +   D+  W+AM++G A  G   
Sbjct: 421 AQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETE 480

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
            A  IF+++    V P+  TF  +L  C+         K F     +  +   L    A+
Sbjct: 481 AAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSAL 540

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           + +  + GHIE A  +      E D+V W +++S 
Sbjct: 541 LTMYAKKGHIESAEEVFKRQR-EKDLVSWNSMISG 574



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 100/218 (45%), Gaps = 2/218 (0%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           PD+D  S+ S++ GF R+ R  EA R F  +    +E D   F+SV+   A L       
Sbjct: 58  PDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSATLCDELFGR 117

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H   I+     +  +  +L+D Y K    +  + VFD ++  +V  W  +ISG A + 
Sbjct: 118 QLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNS 177

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
           L  +   +F +M+     P+S TF   L   +  G+   G +    +  +  +   +   
Sbjct: 178 LNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQ-VHTVVVKNGLDKTIPVS 236

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            ++++L  + G++ +A  ++   T    VV W +++S 
Sbjct: 237 NSLINLYLKCGNVRKAR-ILFDKTEVKSVVTWNSMISG 273


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  340 bits (871), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 164/393 (41%), Positives = 249/393 (63%), Gaps = 3/393 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D++++NSM+ G++ + +  EAL  F  M    +  D FT  +++  CA LGAL     +
Sbjct: 335 RDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRAL 394

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  I ++ +E +  L  AL+DMY KCG++  A  VF  + + DV  W AMI+G+A +G+ 
Sbjct: 395 HACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMG 454

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A   F +M      P+S++++ +LTACSH  L+ EGR YFD MR  Y+I PQ+EHYG 
Sbjct: 455 KAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGC 514

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG-- 241
           M+DLLGR+G ++EA  L+ +M ++P+ V+W ++LSACR  K ++L + A  ++ +L    
Sbjct: 515 MIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDE 574

Query: 242 -GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G YV L N+Y   ++W+ A  +R +M+++ V+K+ G S + +AG +H+F   D+SHP  
Sbjct: 575 DGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRI 634

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
             I  +L  +  R KS G+ P T  + +DV EEEKE  L  HSEKLA+A+G++  +P   
Sbjct: 635 LEIIAMLEEISHRLKSLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNLP 694

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDR 393
           + I KNLR+C DCHS IK+ISRL  R IIVRDR
Sbjct: 695 VHIRKNLRVCEDCHSAIKLISRLWNREIIVRDR 727



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 121/249 (48%), Gaps = 34/249 (13%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P +DV+SW S+I  + R  R  EA+  F+ MLS  + PD+ T  +V+  CA+L  L    
Sbjct: 200 PVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGR 259

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRND-VSVWNAMISGVAIH 120
            +H L+ EK +  +  L  ALIDMY+KCG    A++VFD + R      WNA+I G   H
Sbjct: 260 SLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKH 319

Query: 121 GLAADASAIFTKMEMFNVLP-------------------------------DSITFLGLL 149
           G    A ++F +ME+ +++                                D+ T + LL
Sbjct: 320 GHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLL 379

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
           TAC+  G +++GR     +  R  ++  +    A++D+  + G ++EA  +   M    D
Sbjct: 380 TACASLGALQQGRALHACIEQRL-VEADIYLGTALLDMYMKCGRVDEATIVFQRMGKR-D 437

Query: 210 VVVWRALLS 218
           V  W A+++
Sbjct: 438 VHTWTAMIA 446



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 94/247 (38%), Gaps = 54/247 (21%)

Query: 22  FDEALR--------------FFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLI 67
           FD ALR               FR M  + V PD FTF   ++ C+   +  H+  +  ++
Sbjct: 70  FDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTF-HFLFKCSSSSSRPHSLLLCTML 128

Query: 68  IEKKIELNF-----ILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
               +          +S +LI MY + G    A+  FD +   D   W  +ISG+A  G+
Sbjct: 129 HAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGM 188

Query: 123 AADASAIFTKMEMFNVL-------------------------------PDSITFLGLLTA 151
             D   + ++  + +V+                               PD +T + +L+A
Sbjct: 189 LCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSA 248

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHY-GAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
           C+    +E GR    H+       P  E+   A++D+  + G    A  +  ++   P  
Sbjct: 249 CAKLKDLELGRSL--HLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRP 306

Query: 211 VVWRALL 217
             W A++
Sbjct: 307 QSWNAII 313


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  340 bits (871), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 179/412 (43%), Positives = 255/412 (61%), Gaps = 4/412 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++ +V+WNSMI G+ +N    EA+  F  M  + VEPD  TF SV+  CA LGA +   W
Sbjct: 174 ERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCW 233

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  I+   ++LN +L  +LI+MY +CG +  A+EVFD+++  +V  W AMISG   +G 
Sbjct: 234 VHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGY 293

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
            + A  +F +M    + P+SITF+ +L+AC+H GLV EGR+ F  +R  Y + P +EH  
Sbjct: 294 GSQAVELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHLVPGVEHNV 353

Query: 183 AMVDLLGRAGHIEEAYGLITSMTME-PDVVVWRALLSACRTFKRLELG-EVA--IVNISR 238
            +VD+LGRAG ++EAY  I     E P   +  A+L AC+  K  +LG +VA  ++    
Sbjct: 354 CLVDMLGRAGLLDEAYNFIKEEIPENPAPAILTAMLGACKMHKNFDLGAQVAEHLLAAEP 413

Query: 239 LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
                YV+LSN+Y    R D  E VR  M +K ++K  G S +E+    + F  GD+SH 
Sbjct: 414 ENPAHYVILSNIYALAGRMDQVEIVRNNMIRKCLKKQVGYSTVEVDQKTYLFSMGDKSHS 473

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           E  AI   L  L+ +    G++P ++ V+ ++ EEE+E  L +HSEKLA+A+G+LKTS G
Sbjct: 474 ETNAIYHYLDELMWKCSEAGYVPVSDSVMHELEEEEREYALRYHSEKLAIAFGLLKTSHG 533

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T IRI KNLR+C DCHS IK IS +  R IIVRD++RFH F+ G CSC DYW
Sbjct: 534 TPIRIVKNLRMCEDCHSAIKFISAISSREIIVRDKLRFHHFKVGSCSCLDYW 585



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 123/259 (47%), Gaps = 44/259 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFD-EALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           +P+ D   + S+I    ++  F   +L F+  M+ S V P  +TF SVI  CA L AL H
Sbjct: 70  VPNPDSFLFTSLIKSTSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKH 129

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              VH  ++     L+  + AAL+ +Y KCG +  A++VFD ++   +  WN+MISG   
Sbjct: 130 GRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQ 189

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH------------------------- 154
           +G A +A  +F +M+   V PDS TF+ +L+AC+H                         
Sbjct: 190 NGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVL 249

Query: 155 ----------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
                     CG V + R+ FD M+ R  +      + AM+   G  G+  +A  L   M
Sbjct: 250 GTSLINMYIRCGNVSKAREVFDSMKERNVVA-----WTAMISGYGTNGYGSQAVELFHEM 304

Query: 205 T---MEPDVVVWRALLSAC 220
               + P+ + + A+LSAC
Sbjct: 305 RRNGLFPNSITFVAVLSAC 323



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 11/127 (8%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++VV+W +MI G+  N    +A+  F EM  + + P+  TF +V+  CA  G +N  
Sbjct: 273 MKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEG 332

Query: 61  YWVHNLIIEK-----KIELNFILSAALIDMYSKCGKIQMAKE-VFDTVQRNDV-SVWNAM 113
             +   I E+      +E N      L+DM  + G +  A   + + +  N   ++  AM
Sbjct: 333 RRLFASIREEYHLVPGVEHN----VCLVDMLGRAGLLDEAYNFIKEEIPENPAPAILTAM 388

Query: 114 ISGVAIH 120
           +    +H
Sbjct: 389 LGACKMH 395


>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  340 bits (871), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 166/415 (40%), Positives = 260/415 (62%), Gaps = 6/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+V+WN+MI  F +     EAL+ + +M S  V+ D FT   +I  CA LGALN  
Sbjct: 166 MPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENVDVDGFTLVGLISSCAHLGALNIG 225

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H    E  ++ +  +  ALIDMY+KCG +  A  +FD +QR D+  WN+MI G  +H
Sbjct: 226 VQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVH 285

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  ++A   F +M    + P+ +TFLGLL  CSH GLV+EG KYF+ M S++ ++P+++H
Sbjct: 286 GRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKH 345

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           YG +VDL GRAG +++A  ++++ +   D V+WR LL +C+  K + +GE+A+  +S L 
Sbjct: 346 YGCLVDLYGRAGKLDKALEIVSN-SSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELG 404

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               GD +LL+ +Y   K       +R+++K +G + + G SW+E+   +H+F   D+SH
Sbjct: 405 ATSAGDCILLATIYAGEKDKAGVARMRKMIKSQGKKTTPGWSWIEIGEQVHKFVVDDKSH 464

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDV--SEEEKEGNLYHHSEKLALAYGILKT 355
             +  + + L  +I +    G++    +  +D+  + E  + +  +HSEKLA+A+G+ +T
Sbjct: 465 RYSVEVYEKLREVIHQASFFGYVGDESISSLDMLSTMETLKTSCTYHSEKLAIAFGLART 524

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + GT+IRI KNLR+C DCHS+IK +S    R IIVRDR+RFH F+GG CSC DYW
Sbjct: 525 ADGTQIRIVKNLRVCRDCHSFIKAVSVAFNREIIVRDRVRFHHFKGGECSCNDYW 579



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 108/211 (51%), Gaps = 3/211 (1%)

Query: 8   SWNSMIGGFVRNARFDEALRFFREMLSSKVE-PDKFTFASVIYGCARLGALNHAYWVHNL 66
           +WNS+I GF +++   +A+ F+ +M+      PD FTF+ V+  C R+ A      VH  
Sbjct: 71  AWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKEVHGS 130

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           +I    + + I+   L+  YS  G + +A++VFD +   D+  WNAMIS  +  GL  +A
Sbjct: 131 VIRCGYDADVIVCTNLVKCYSAMGLVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQEA 190

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186
              + +M   NV  D  T +GL+++C+H G +  G +     R    +   L    A++D
Sbjct: 191 LQTYNQMRSENVDVDGFTLVGLISSCAHLGALNIGVQMHRFAREN-GLDQSLYVGNALID 249

Query: 187 LLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           +  + G +++A  LI       D+  W +++
Sbjct: 250 MYAKCGSLDQAI-LIFDRMQRKDIFTWNSMI 279


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 163/409 (39%), Positives = 250/409 (61%), Gaps = 3/409 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D ++W+ +IGG V+N+R +EA+  FR+M +   +PD+ T  S++  C+    L     +H
Sbjct: 544 DEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIH 603

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             +     + +   + AL+DMY+KCG + +++ VFD +   DV  WN MI    +HG   
Sbjct: 604 CYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGK 663

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           +A ++F KM +  V PDS TF  +L+ACSH  LVEEG + F+ M   + ++P+ EHY  +
Sbjct: 664 EALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCV 723

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMG 241
           VD+  RAG +EEAYG I  M MEP  + W+A L+ CR +K +EL +++   +  I     
Sbjct: 724 VDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPNGS 783

Query: 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
            +YV L N+    K W  A  +R++MK++G+ K+ G SW  +   +H F AGD+S+ E+ 
Sbjct: 784 ANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSWFHVGNRVHTFVAGDKSNMESD 843

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
            I   L  L  + K+ G+ P T+ VL D+ +EEK  +L +HSEKLA+A+GIL  +  + I
Sbjct: 844 KIYNFLDELFAKIKAAGYKPDTDYVLHDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTI 903

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           R+ KNLRIC DCH+ IK +S ++   I+VRD +RFH F+ G CSC D+W
Sbjct: 904 RVFKNLRICGDCHNAIKYMSNVVGVTIVVRDSLRFHHFKNGNCSCKDFW 952



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 110/229 (48%), Gaps = 2/229 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++V++WNS+   +V      + L  FREM  + V+PD    +S++  C++L  L   
Sbjct: 303 MPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSG 362

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++  +  +  +  AL+++Y+ C  ++ A+ VFD +   +V  WN++ S     
Sbjct: 363 KTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNC 422

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G       +F +M +  V PD +T L +L ACS    ++ G K       R+ +   +  
Sbjct: 423 GFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSG-KVIHGFAVRHGMVEDVFV 481

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG 229
             A++ L  +   + EA  ++  +    +V  W  +L+A  T K  E G
Sbjct: 482 CNALLSLYAKCVCVREAQ-VVFDLIPHREVASWNGILTAYFTNKEYEKG 529



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 112/269 (41%), Gaps = 43/269 (15%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVV+WNS+   +V      + L  FREM+   V+PD  T + ++  C+ L  L   
Sbjct: 202 MPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSG 261

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++  +  N  +S AL+++Y  C  ++ A+ VFD +   +V  WN++ S     
Sbjct: 262 KAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNC 321

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACS--------------------------- 153
           G       +F +M +  V PD +    +L ACS                           
Sbjct: 322 GFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVC 381

Query: 154 --------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
                   +C  V E +  FD M  R  +      + ++       G  ++   +   M 
Sbjct: 382 TALVNLYANCLCVREAQTVFDLMPHRNVVT-----WNSLSSCYVNCGFPQKGLNVFREMV 436

Query: 206 M---EPDVVVWRALLSACRTFKRLELGEV 231
           +   +PD+V   ++L AC   + L+ G+V
Sbjct: 437 LNGVKPDLVTMLSILHACSDLQDLKSGKV 465



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 105/216 (48%), Gaps = 2/216 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +DVV+WNS+   +V      + L  FR+M  +KV+ +  T +S++ GC+ L  L     +
Sbjct: 104 RDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEI 163

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  ++   +  +  +S+A ++ Y+KC  ++ A+ VFD +   DV  WN++ S     G  
Sbjct: 164 HGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFP 223

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
                +F +M +  V PD +T   +L+ACS    ++ G K       ++ +   +    A
Sbjct: 224 QKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSG-KAIHGFALKHGMVENVFVSNA 282

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +V+L      + EA  +   M    +V+ W +L S 
Sbjct: 283 LVNLYESCLCVREAQAVFDLMPHR-NVITWNSLASC 317



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 82/197 (41%), Gaps = 2/197 (1%)

Query: 23  DEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAAL 82
           +EA++ +    +  ++PDK  F +V   CA           H+      +  +  +  A 
Sbjct: 22  NEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAF 81

Query: 83  IDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDS 142
           I  Y KC  ++ A+ VFD +   DV  WN++ +     G       +F KM +  V  + 
Sbjct: 82  IHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANP 141

Query: 143 ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
           +T   +L  CS    ++ G++    +  R+ +   +    A V+   +   + EA  +  
Sbjct: 142 LTVSSILPGCSDLQDLKSGKEIHGFV-VRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFD 200

Query: 203 SMTMEPDVVVWRALLSA 219
            M    DVV W +L S 
Sbjct: 201 LMPHR-DVVTWNSLSSC 216



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 33/188 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KDV SWN+MI     +    EAL  F +ML S V+PD  TF  V+  C+        
Sbjct: 641 MPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACS-------- 692

Query: 61  YWVHNLIIEKKIELNFILS------------AALIDMYSKCGKIQMAKEVFDTVQRNDVS 108
              H++++E+ +++   +S              ++D+YS+ G ++   E +  +QR  + 
Sbjct: 693 ---HSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLE---EAYGFIQRMPME 746

Query: 109 ----VWNAMISGVAIHGLAADASAIFTKMEMFNVLPD-SITFLGLLTACSHCGLVEEGRK 163
                W A ++G  ++     A    +  ++F + P+ S  ++ L        L  E  K
Sbjct: 747 PTAIAWKAFLAGCRVYKNVELAK--ISAKKLFEIDPNGSANYVTLFNILVTAKLWSEASK 804

Query: 164 YFDHMRSR 171
               M+ R
Sbjct: 805 IRKLMKER 812


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 170/415 (40%), Positives = 251/415 (60%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML--SSKVEPDKFTFASVIYGCARLGALN 58
           MP K+ VSW++MI  F +N    +AL  F+ M+  +    P+  T  +++  CA L AL 
Sbjct: 244 MPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALE 303

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H  I+ ++++    +  ALI MY +CG++ M + VFD +++ DV  WN++IS   
Sbjct: 304 QGKLIHGYILRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYG 363

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG    A  IF  M    V P  I+F+ +L ACSH GLVEEG+  F+ M S+Y I P +
Sbjct: 364 MHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGM 423

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVN 235
           EHY  MVDLLGRA  + EA  LI  M  EP   VW +LL +CR    +EL E A   +  
Sbjct: 424 EHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTVLFE 483

Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           +     G+YVLL+++Y   K W  A++V ++++ +G++K  G SW+E+   ++ F + D 
Sbjct: 484 LEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDE 543

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
            +P+ + I  +L  L    K++G++P T +VL D+ EEEKE  +  HSEKLA+A+G++ T
Sbjct: 544 HNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINT 603

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + G  IRI KNLR+C DCH+  K IS+   R I+VRD  RFH F  G+CSCGDYW
Sbjct: 604 AKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFRDGVCSCGDYW 658



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 12/224 (5%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA----RLGALN 58
           ++ +  WN++           E L  + +M       D+FT+  V+  C      +  L 
Sbjct: 141 ERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPLR 200

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H  I+    E N  +   L+D+Y+K G +  A  VF  +   +   W+AMI+  A
Sbjct: 201 KGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFA 260

Query: 119 IHGLAADASAIFTKM--EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY--SI 174
            + +   A  +F  M  E  N +P+S+T + +L AC+    +E+G+    ++  R   SI
Sbjct: 261 KNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDSI 320

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
            P L    A++ + GR G +     +  +M  + DVV W +L+S
Sbjct: 321 LPVL---NALITMYGRCGEVLMGQRVFDNMK-KRDVVSWNSLIS 360



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 101/214 (47%), Gaps = 12/214 (5%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIE 69
           N +I    +     +AL     +L  +  P + TF  +IY CA+  +L++   VH  +++
Sbjct: 51  NQLIQSLCKGGNLKQALH----LLCCEPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVD 106

Query: 70  KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAI 129
              + +  L+  LI+MY + G I  A +VFD  +   + VWNA+   +A+ G   +   +
Sbjct: 107 SGFDQDPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLDL 166

Query: 130 FTKMEMFNVLPDSITFLGLLTAC-----SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           + +M       D  T+  +L AC     S C L  +G++   H+  R+  +  +     +
Sbjct: 167 YIQMNWIGTPSDRFTYTYVLKACVVSELSVCPL-RKGKEIHAHIL-RHGYEANIHVMTTL 224

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
           +D+  + G +  A  +  +M  + + V W A+++
Sbjct: 225 LDVYAKFGSVSYANSVFCAMPTK-NFVSWSAMIA 257


>gi|222629025|gb|EEE61157.1| hypothetical protein OsJ_15124 [Oryza sativa Japonica Group]
          Length = 383

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 165/383 (43%), Positives = 237/383 (61%), Gaps = 4/383 (1%)

Query: 32  MLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK 91
           ML++ ++PD      ++   A L +L     +H  +I  K  +   + ++L+DMYS CG 
Sbjct: 1   MLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGS 60

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           +  A +VFD  +  DV +W AMI+   +HG    A  IF +M    V PD ++FL LL A
Sbjct: 61  MNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYA 120

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           CSH  LV+EG+ Y D M S+Y +QP  EHY  +VDLLGR+G  EEAY  I SM +EP  V
Sbjct: 121 CSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSV 180

Query: 212 VWRALLSACRTFKRLELGEVAIVNISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMK 268
           VW ALL ACR  K  EL  +A   +  L     G+YVL+SN++  + +W+  + +R  M 
Sbjct: 181 VWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMT 240

Query: 269 KKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEG-FLPATELVL 327
           ++G+RK    SW+E+   +H F A D SH ++QAI   L  + ++ + EG ++  T  VL
Sbjct: 241 EQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEITEKLRREGQYVEDTSFVL 300

Query: 328 MDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRV 387
            DVSEEEK   L+ HSE+LA+++G++ T+ GT +RI+KNLR+C DCH + K++S+L  R 
Sbjct: 301 HDVSEEEKIDLLHRHSERLAISFGLISTASGTPLRIAKNLRVCGDCHEFTKLVSKLFERE 360

Query: 388 IIVRDRIRFHRFEGGLCSCGDYW 410
           I+VRD  RFH F GG CSCGD+W
Sbjct: 361 IVVRDANRFHHFSGGTCSCGDFW 383



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDVV W +MI     +    +A+  F+ ML + V PD  +F +++Y C+    ++   + 
Sbjct: 74  KDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFY 133

Query: 64  HNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS-VWNAMISGVAIH 120
            ++++ K K++      A ++D+  + G+ + A +   ++     S VW A++    IH
Sbjct: 134 LDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIH 192


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 173/412 (41%), Positives = 248/412 (60%), Gaps = 6/412 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D VSWNSMI G++ N    +A+     M+      D FTFA+V+  CA +  L     V
Sbjct: 371 RDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEV 430

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   I   +E + ++ +AL+DMYSKCG+I  A   F+ +   ++  WN+MISG A HG  
Sbjct: 431 HACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHG 490

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +FT+M++   LPD ITF+G+L+ACSH GLV+EG +YF  M   Y + P++EHY  
Sbjct: 491 DNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSC 550

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC--RTFKRLELGEVA---IVNISR 238
           MVDLLGRAG +++    I  M ++P++++WR +L AC     ++ ELG  A   + N+  
Sbjct: 551 MVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFNMDP 610

Query: 239 LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
               +YVLLSNMY    +W+     R  M++  V+K  G SW+ +   +H F AGD SHP
Sbjct: 611 QNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKDGVHVFVAGDNSHP 670

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           E   I   L  L ++ +  G++P  +  L D+  E KE  L +HSEKLA+A+ +L  + G
Sbjct: 671 EKGLIYAKLKELDKKIRDAGYVPQIKFALYDLEPENKEELLSYHSEKLAVAF-VLTRNSG 729

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             IRI KNLR+C DCHS  K IS+++ R I++RD  RFH FE G CSC DYW
Sbjct: 730 LPIRIMKNLRVCGDCHSAFKYISKVVDRSIVLRDSNRFHHFEDGKCSCRDYW 781



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 108/220 (49%), Gaps = 2/220 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M DKD VSWNSMI G  +N  F++A++ +  M  + + P  F   S +  CA LG +   
Sbjct: 164 MVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLG 223

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H   I+  ++++  +S  L+ +Y++  ++   ++VF  +   D   WN +I  +A  
Sbjct: 224 QQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADS 283

Query: 121 GLA-ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           G + ++A  +F +M      P+ +TF+ LL   S     +   +    +  +Y+++    
Sbjct: 284 GASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQ-IHALILKYNVKDDNA 342

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A++   G++G +E    + + M+   D V W +++S 
Sbjct: 343 IENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISG 382



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 102/225 (45%), Gaps = 12/225 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA------RL 54
           MPD++ V+W  +I G+ +N   ++A    +EM+     P++F F S I  C       R 
Sbjct: 61  MPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRK 120

Query: 55  GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMI 114
           G   H Y +   + + K+ +       LI+MY+KCG I  A+ VF  +   D   WN+MI
Sbjct: 121 GRQVHGYAIRTGLNDAKVAV----GNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMI 176

Query: 115 SGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI 174
           +G+  +    DA   +  M    ++P +   +  L++C+  G +  G++       +  +
Sbjct: 177 TGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGE-GIKLGL 235

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              +     ++ L      + E   + + M +E D V W  ++ A
Sbjct: 236 DMDVSVSNTLLALYAETSRLAECQKVFSWM-LERDQVSWNTVIGA 279



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 115/260 (44%), Gaps = 45/260 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRN-ARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           M ++D VSWN++IG    + A   EA+  F EM+ +   P++ TF +++   + L     
Sbjct: 265 MLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKL 324

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVA 118
           ++ +H LI++  ++ +  +  AL+  Y K G+++  +E+F  + +R D   WN+MISG  
Sbjct: 325 SHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYI 384

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC-------------------------- 152
            + L   A  +   M       D  TF  +L+AC                          
Sbjct: 385 HNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVV 444

Query: 153 ---------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
                    S CG ++   ++F+ M  R      L  + +M+    R GH + A  L T 
Sbjct: 445 IGSALVDMYSKCGRIDYASRFFNLMPVR-----NLYSWNSMISGYARHGHGDNALRLFTR 499

Query: 204 MTME---PDVVVWRALLSAC 220
           M +    PD + +  +LSAC
Sbjct: 500 MKLSGQLPDHITFVGVLSAC 519



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 82/182 (45%), Gaps = 17/182 (9%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +++ SWNSMI G+ R+   D ALR F  M  S   PD  TF  V+  C+ +G ++  
Sbjct: 469 MPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEG 528

Query: 61  YWVHNLIIE-----KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMI 114
           +     + E      ++E      + ++D+  + G++   +   + +  + ++ +W  ++
Sbjct: 529 FEYFKSMTEVYGLVPRVE----HYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVL 584

Query: 115 SGVAIHGLAADASAIFTKMEM-FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
            G    G            EM FN+ P +     LL+      +   G K+ D  R+R +
Sbjct: 585 -GACCRGNGRKTELGRRAAEMLFNMDPQNAVNYVLLS-----NMYASGGKWEDMARTRRA 638

Query: 174 IQ 175
           ++
Sbjct: 639 MR 640



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 82/189 (43%), Gaps = 6/189 (3%)

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +++   + +  L   LI++Y + G    A+++FD +   +   W  +ISG   +G+ 
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMP 82

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL-VEEGRKYFDHMRSRYSIQPQLEHYG 182
            DA  +  +M     LP+   F   + AC    L   +GR+   +         ++    
Sbjct: 83  EDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGN 142

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR---L 239
            ++++  + G I+ A  +   M ++ D V W ++++     K  E   V   N  R   L
Sbjct: 143 GLINMYAKCGDIDHARSVFGLM-VDKDSVSWNSMITGLDQNKCFE-DAVKSYNSMRKTGL 200

Query: 240 MGGDYVLLS 248
           M  ++ L+S
Sbjct: 201 MPSNFALIS 209


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 165/414 (39%), Positives = 253/414 (61%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           M  KD++SWN++IGG+ +N   +EAL  F  +L  K   PD+ T A V+  CA L A + 
Sbjct: 458 MRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDK 517

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  I+      +  ++ +L+DMY+KCG + +A+ +FD +   D+  W  MI+G  +
Sbjct: 518 GREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGM 577

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +A A+F +M    + PD I+F+ LL ACSH GLV+EG ++F+ MR    I+P +E
Sbjct: 578 HGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVE 637

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY  +VD+L R G++ +AY  I +M + PD  +W ALL  CR    ++L E     +  L
Sbjct: 638 HYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFEL 697

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVL++N+Y   ++W+  + +R+ + ++G+RK+ G SW+E+ G ++ F AGD S
Sbjct: 698 EPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSS 757

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           +PE + I+  L  +  R   EG+ P T+  L+D  E EKE  L  HSEKLA+A GI+ + 
Sbjct: 758 NPETEKIEAFLRGVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSG 817

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  IR++KNLR+C DCH   K +S+L RR I++RD  RFH+F+ G CSC  +W
Sbjct: 818 HGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 116/219 (52%), Gaps = 6/219 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA--RLGALN 58
           M ++DV+SWNS+I G+V N   ++ L  F +ML S +E D  T  SV  GCA  RL +L 
Sbjct: 256 MTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLG 315

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
            A  VH   ++            L+DMYSKCG +  AK VF  +    V  + +MI+G A
Sbjct: 316 RA--VHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYA 373

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
             GLA +A  +F +ME   + PD  T   +L  C+   L++EG++  + ++    +   +
Sbjct: 374 REGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKEN-DMGFDI 432

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
               A++D+  + G + EA  + + M ++ D++ W  ++
Sbjct: 433 FVSNALMDMYAKCGSMREAELVFSEMRVK-DIISWNTVI 470



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 115/227 (50%), Gaps = 17/227 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  + VVS+ SMI G+ R     EA++ F EM    + PD +T  +V+  CAR   L+  
Sbjct: 357 MSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEG 416

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  I E  +  +  +S AL+DMY+KCG ++ A+ VF  ++  D+  WN +I G + +
Sbjct: 417 KRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKN 476

Query: 121 GLAADASAIFTKMEMFNVL-------PDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRY 172
             A +A      + +FN+L       PD  T   +L AC+     ++GR+   + MR+ Y
Sbjct: 477 CYANEA------LSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY 530

Query: 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                + +  ++VD+  + G +  A  L   +T   D+V W  +++ 
Sbjct: 531 FSDRHVAN--SLVDMYAKCGALLLARLLFDDIT-SKDLVSWTVMIAG 574



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 110/255 (43%), Gaps = 33/255 (12%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           WN ++    ++  F  ++  F++M+SS VE D +TF+ V    + L ++N    +H  I+
Sbjct: 163 WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYIL 222

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
           +        +  +L+  Y K  ++  A++VFD +   DV  WN++I+G   +GLA    +
Sbjct: 223 KSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLS 282

Query: 129 IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---------------KYFDHMRSRYS 173
           +F +M    +  D  T + +   C+   L+  GR               ++ + +   YS
Sbjct: 283 VFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYS 342

Query: 174 IQPQLE---------------HYGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRA 215
               L+                Y +M+    R G   EA  L   M  E   PDV    A
Sbjct: 343 KCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTA 402

Query: 216 LLSACRTFKRLELGE 230
           +L+ C   + L+ G+
Sbjct: 403 VLNCCARNRLLDEGK 417



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 97/218 (44%), Gaps = 6/218 (2%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+ V   N+ +  F  +     A++     +S K + D  T  SV+  CA   +L     
Sbjct: 58  DRSVTDANTQLRRFCESGNLKNAVKLLH--VSGKWDIDPRTLCSVLQLCADSKSLKDGKE 115

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           V N I      L+  L + L  MY+ CG ++ A  VFD V+      WN +++ +A  G 
Sbjct: 116 VDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGD 175

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHY 181
            + +  +F KM    V  DS TF  +  + S    V  G +   + ++S +  +  + + 
Sbjct: 176 FSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGN- 234

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            ++V    +   ++ A  +   MT E DV+ W ++++ 
Sbjct: 235 -SLVAFYLKNHRVDSARKVFDEMT-ERDVISWNSIING 270


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 168/432 (38%), Positives = 250/432 (57%), Gaps = 25/432 (5%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREML--------------------SSKVEPDKFT 43
           +D+VSWN++I G +      EA +  REM                       +  P+  T
Sbjct: 430 RDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNIT 489

Query: 44  FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
             +++ GCA L A      +H   +   +E +  + +AL+DMY+KCG + +A+ VFD + 
Sbjct: 490 LMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLP 549

Query: 104 RNDVSVWNAMISGVAIHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGR 162
           R +V  WN +I    +HGL  +A A+F +M       P+ +TF+  L ACSH GLV+ G 
Sbjct: 550 RRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGL 609

Query: 163 KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM-EPDVVVWRALLSACR 221
           + F  M+  Y  +P    +  +VD+LGRAG ++EAYG+I+SM   E  V  W  +L ACR
Sbjct: 610 ELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACR 669

Query: 222 TFKRLELGEVAIVNISRLMGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGK 278
             + ++LG +A   +  L   +   YVLL N+Y     W+ +  VR +M+++GV K  G 
Sbjct: 670 LHRNVKLGRIAAERLFELEPDEASHYVLLCNIYSAAGLWENSTEVRGMMRQRGVAKEPGC 729

Query: 279 SWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGN 338
           SW+EL G IH+F AG+ +HPE+  +   + +L +R + EG++P T  VL DV E EK   
Sbjct: 730 SWIELDGAIHRFMAGESAHPESAQVHAHMDALWERMRREGYVPDTSCVLHDVDEAEKAAM 789

Query: 339 LYHHSEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHR 398
           L +HSEKLA+A+G+L+  PG  IR++KNLR+C+DCH   K ISR++ R I++RD  RFH 
Sbjct: 790 LRYHSEKLAIAFGLLRAPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHH 849

Query: 399 FEGGLCSCGDYW 410
           F  G CSCGDYW
Sbjct: 850 FRDGTCSCGDYW 861



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 117/221 (52%), Gaps = 7/221 (3%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D+V+WN+MI   V+  R +EA++   +M++  V PD  TFAS +  C+RL  L     VH
Sbjct: 224 DLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVH 283

Query: 65  NLII-EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN--DVSVWNAMISGVAIH- 120
             ++ +  +  N  +++AL+DMY+   ++  A+ VFD V  +   + +WNAMI G A H 
Sbjct: 284 AFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHG 343

Query: 121 GLAADASAIFTKMEM-FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           G+  +A  +F++ME      P   T  G+L AC+    V  G++       +  +     
Sbjct: 344 GMDEEAIELFSRMEAEAGCAPSETTMAGVLPACAR-SEVFTGKEAVHGYVVKRDMASNRF 402

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
              A++D+  R G ++EA+ +   + +  D+V W  L++ C
Sbjct: 403 VQNALMDMYARLGRMDEAHTIFAMIDLR-DIVSWNTLITGC 442



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 117/255 (45%), Gaps = 27/255 (10%)

Query: 9   WNSMIGGFVRNARFDE-ALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           WN+MI G+ ++   DE A+  F  M   +   P + T A V+  CAR         VH  
Sbjct: 332 WNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGY 391

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           ++++ +  N  +  AL+DMY++ G++  A  +F  +   D+  WN +I+G  + GL ++A
Sbjct: 392 VVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEA 451

Query: 127 SAIFTKMEMFN--------------------VLPDSITFLGLLTACSHCGLVEEGRKYFD 166
             +  +M++ +                     +P++IT + LL  C+       G++   
Sbjct: 452 FQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHG 511

Query: 167 HMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRL 226
           +   R++++  L    A+VD+  + G +  A  +   +    +V+ W  L+ A   +   
Sbjct: 512 YA-VRHALESDLAVGSALVDMYAKCGCLALARAVFDRLPRR-NVITWNVLIMA---YGMH 566

Query: 227 ELGEVAIVNISRLMG 241
            LG+ A+    R++ 
Sbjct: 567 GLGDEALALFDRMVA 581



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 13/172 (7%)

Query: 2   PD-KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA-------R 53
           PD +D VS+NS+I       R+  AL   R+ML+   E   FT  SV+  C+       R
Sbjct: 113 PDLRDAVSYNSLISALCLFRRWGHALDALRDMLADH-EVSSFTLVSVLLACSHLADQGHR 171

Query: 54  LGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF--DTVQRNDVSVWN 111
           LG   HA+ + +  ++K  E  F  + AL+ MY++ G +  A+ +F        D+  WN
Sbjct: 172 LGREAHAFALKHGFLDKGRE-RFPFN-ALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWN 229

Query: 112 AMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
            MIS +   G   +A  +   M    V PD +TF   L ACS   L+  GR+
Sbjct: 230 TMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGRE 281



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/124 (21%), Positives = 62/124 (50%), Gaps = 4/124 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLGALNH 59
           +P ++V++WN +I  +  +   DEAL  F  M+++ +  P++ TF + +  C+  G ++ 
Sbjct: 548 LPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDR 607

Query: 60  AYWV-HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ--RNDVSVWNAMISG 116
              +   +  +   E    L A ++D+  + G++  A  +  ++    + VS W+ M+  
Sbjct: 608 GLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGA 667

Query: 117 VAIH 120
             +H
Sbjct: 668 CRLH 671


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 172/414 (41%), Positives = 249/414 (60%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           MP + +VSWN+++ G+V+N+R ++AL  F+ M+  + V P++ T +SV+ GC+ L AL  
Sbjct: 204 MPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSSVLLGCSNLSALGF 263

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              VH    +  +        +L+ MY KCG +  A ++F  ++  DV  WNAMISG A 
Sbjct: 264 GRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAMISGYAH 323

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +A  +F KM+   V P+ ITF+ +LTAC H G+ + G + F+ M+  Y I+ +++
Sbjct: 324 HGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGMQCFERMQEVYGIEARVD 383

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HY  MVDLL RAG +E A  LI SM  +P    +  LL+A R +K +E  E A   ++  
Sbjct: 384 HYSCMVDLLCRAGSLERAVSLIRSMPFQPHPSAYGTLLNASRVYKNMEFAEFAAGKLIEQ 443

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
           +    G YV L+N+Y    +W     VR  MK   V K+ G SW+E+ GVIH F++ DR 
Sbjct: 444 NPQNAGAYVQLANIYAVANQWADVSRVRRWMKDNAVVKTPGYSWVEINGVIHVFRSNDRL 503

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+   I + L  L +R K+ G++P  +  L DV E  K   L  HSEKLA+A+G+L T+
Sbjct: 504 HPQLSLIHERLCQLEERMKAMGYVPDLDFALHDVDESLKVQMLMRHSEKLAIAFGLLSTA 563

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PG  +RI KNLR+C DCH+  K+IS++  R II+RD  RFH F  G CSCGDYW
Sbjct: 564 PGITLRIFKNLRVCGDCHTAAKLISKIEDREIILRDTTRFHHFRSGHCSCGDYW 617



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 100/216 (46%), Gaps = 10/216 (4%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++V SWN+M+ G  R+    EA   F  M +     +  ++ +++   A  G +  A   
Sbjct: 113 RNVTSWNTMLSGLSRSGAVGEARAVFLAMPAR----NSISWNAMVSCFAHAGDMCAAEEC 168

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
                +K+   N +L  A++  Y   G ++ A + F+ +    +  WNA+++G   +  A
Sbjct: 169 FEDAPDKE---NAVLWTAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRA 225

Query: 124 ADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
            DA  +F  M    +V P+  T   +L  CS+   +  GR+      ++  +  ++    
Sbjct: 226 EDALWVFKTMVRDADVRPNESTLSSVLLGCSNLSALGFGRQVHQWC-TKLPLSRRVTAGT 284

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
           ++V +  + G ++ A  L + M +  DV+ W A++S
Sbjct: 285 SLVSMYCKCGDLDGACKLFSEMRIR-DVIAWNAMIS 319



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 69/142 (48%), Gaps = 17/142 (11%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRN--DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVL 139
           L+  +   G ++ A+++F  +     +V+ WN M+SG++  G   +A A+F  M   N  
Sbjct: 88  LLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLSRSGAVGEARAVFLAMPARN-- 145

Query: 140 PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH---YGAMVDLLGRAGHIEE 196
             SI++  +++  +H G +    + F+         P  E+   + AMV     +GH+E+
Sbjct: 146 --SISWNAMVSCFAHAGDMCAAEECFED-------APDKENAVLWTAMVSGYMDSGHVEK 196

Query: 197 AYGLITSMTMEPDVVVWRALLS 218
           A     +M +   +V W A+++
Sbjct: 197 AMQFFEAMPVR-SLVSWNAVVA 217


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 174/411 (42%), Positives = 247/411 (60%), Gaps = 4/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+D V WNSM+  + +N   DE+L    EM +  V P + T  +VI   A +  L H   
Sbjct: 222 DRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGRE 281

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H        + N  +  ALIDMY+KCG +++A  +F+ ++   V  WNA+I+G A+HGL
Sbjct: 282 IHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGL 341

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A +A  +F +M M    PD ITF+G L ACS   L++EGR  ++ M     I P +EHY 
Sbjct: 342 AVEALDLFERM-MKEAQPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYT 400

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM-- 240
            MVDLLG  G ++EAY LI  M + PD  VW ALL++C+T   +EL EVA+  +  L   
Sbjct: 401 CMVDLLGHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPD 460

Query: 241 -GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             G+YV+L+NMY    +W+    +R++M  KG++K+   SW+E+   ++ F +GD SHP 
Sbjct: 461 DSGNYVILANMYAQSGKWEGVARLRQLMIDKGIKKNIACSWIEVKNKVYAFLSGDVSHPN 520

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           + AI   L  L    +  G++P T  V  DV E+EK   +  HSE+LA+A+G++ T PGT
Sbjct: 521 SGAIYAELKRLEGLMREAGYVPDTGSVFHDVEEDEKTDMVCSHSERLAIAFGLISTLPGT 580

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            + I+KNLRIC DCH  IK IS++  R I VRD  R+H F  GLCSCGDYW
Sbjct: 581 RLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFRHGLCSCGDYW 631



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 108/219 (49%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  ++  WN +I  +  N   + A+  + +ML   ++PD FT   V+  C+ L  +   
Sbjct: 119 IPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEG 178

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +I    E +  + AAL+DMY+KCG +  A+ VFD +   D  +WN+M++  A +
Sbjct: 179 RVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQN 238

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   ++ ++  +M    V P   T + ++++ +    +  GR+       R+  Q   + 
Sbjct: 239 GHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGRE-IHGFGWRHGFQYNDKV 297

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++D+  + G ++ A  L   +  E  VV W A+++ 
Sbjct: 298 KTALIDMYAKCGSVKVACVLFERLR-EKRVVSWNAIITG 335



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 91/180 (50%), Gaps = 2/180 (1%)

Query: 40  DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF 99
           + + +AS++  C    AL     +H  + +  I  N  L+  L++ YS C  ++ A  +F
Sbjct: 57  NHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLF 116

Query: 100 DTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVE 159
           D + + ++ +WN +I   A +G    A +++ +M  + + PD+ T   +L ACS    + 
Sbjct: 117 DKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIG 176

Query: 160 EGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           EGR   + +  R   +  +    A+VD+  + G + +A  +   + ++ D V+W ++L+A
Sbjct: 177 EGRVIHERV-IRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKI-VDRDAVLWNSMLAA 234


>gi|218202317|gb|EEC84744.1| hypothetical protein OsI_31741 [Oryza sativa Indica Group]
          Length = 563

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 177/416 (42%), Positives = 255/416 (61%), Gaps = 28/416 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLGALNH 59
           M  +D VSWN++I   V N  ++EA+  FREML+S +  PD+ T                
Sbjct: 170 MQARDTVSWNTIIAWCVENGEYEEAIAVFREMLASMECLPDRVT---------------- 213

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVA 118
                 L   K IE+   LS+ALI+MYSKC  I+ A  VF+ +  + +V  WNAM++G  
Sbjct: 214 ------LFPGKGIEVEERLSSALINMYSKCACIEGAVHVFENLGAQMNVDTWNAMLAGFT 267

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            +G +  A  +F +ME+  ++P+ ITF  +L ACSH G VEEG   F+ M   Y I+P +
Sbjct: 268 ANGCSEKALELFARMEITGLVPNKITFNTVLNACSHGGFVEEGMGCFERMTKVYGIEPDI 327

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVN 235
            HYG MVDL  RAG  ++A  +I  M M+PD  VW+AL+ AC+T +  ELG  A   ++ 
Sbjct: 328 AHYGCMVDLFCRAGLFDKAEKMIQMMPMKPDAAVWKALVGACKTHRNFELGRKAGHMLIE 387

Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
            +      YVLLSN+Y     W     VR++M  +GV+K  G S +E+ GVIH+F +GD+
Sbjct: 388 AAPNDHAGYVLLSNIYALDGNWTGVHKVRKLMLDRGVQKVPGSSSIEIDGVIHEFISGDK 447

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEE-KEGNLYHHSEKLALAYGILK 354
           SH   + I ++L  + Q+ K  G++P T  VL+D+ +E+ KE +L  HSEKLA+A+G++ 
Sbjct: 448 SHSSKEDIYEMLSEMCQQLKVAGYVPDTSHVLLDIDDEDVKESSLALHSEKLAIAFGLIS 507

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T+PGT IRI+KNLR+C DCH+ +K++S++  R IIVRD  RFH F  G CSCGD+W
Sbjct: 508 TAPGTPIRIAKNLRVCGDCHNAVKLLSKIYGRCIIVRDANRFHHFREGSCSCGDFW 563


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 169/415 (40%), Positives = 245/415 (59%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P++DVVS  ++I G+ +    +EAL  FR +    ++ +  T+ SV+   + L AL+H 
Sbjct: 220 LPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHG 279

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VHN ++  ++    +L  +LIDMYSKCG +  A+ +FDT+    V  WNAM+ G + H
Sbjct: 280 KQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKH 339

Query: 121 GLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQL 178
           G   +   +F  M +   V PDS+T L +L+ CSH GL ++G   F  M S + S+QP  
Sbjct: 340 GEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDS 399

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVN 235
           +HYG +VD+LGRAG +E A+  +  M  EP   +W  LL AC     L++GE     ++ 
Sbjct: 400 KHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQ 459

Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           I     G+YV+LSN+Y    RW+   ++R +M KK V K  G+SW+EL  V+H F A D 
Sbjct: 460 IEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDC 519

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SHP  + +   +  L  R K  G++P    VL DV EE+KE  L  HSEKLAL +G++ T
Sbjct: 520 SHPRREEVSAKVQELSARFKEAGYVPDLSCVLHDVDEEQKEKILLSHSEKLALTFGLIAT 579

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
                IR+ KNLRIC DCH++ K  S++  R + +RD+ RFHR  GG CSCGDYW
Sbjct: 580 PESVPIRVIKNLRICVDCHNFAKYTSKIYGREVSLRDKNRFHRIVGGKCSCGDYW 634



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 118/217 (54%), Gaps = 2/217 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++VVSW +MI  + +     +AL  F +ML S  EP++FTFA+V+  C         
Sbjct: 119 MPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLG 178

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ II+   E +  + ++L+DMY+K GKI  A+ +F  +   DV    A+ISG A  
Sbjct: 179 RQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQL 238

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  +F +++   +  + +T+  +LTA S    ++ G++  +H+  R  +   +  
Sbjct: 239 GLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLL-RSEVPSYVVL 297

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             +++D+  + G++  A  +  ++  E  V+ W A+L
Sbjct: 298 QNSLIDMYSKCGNLTYARRIFDTL-HERTVISWNAML 333



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 9/211 (4%)

Query: 44  FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           + +V+  C R  A+     VH  +I+        L   LI  Y KC  ++ A+ VFD + 
Sbjct: 61  YNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMP 120

Query: 104 RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
             +V  W AMIS  +  G A+ A ++F +M      P+  TF  +LT+C        GR+
Sbjct: 121 ERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQ 180

Query: 164 YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTF 223
              H+  + + +  +    +++D+  + G I EA G+   +  E DVV   A++S    +
Sbjct: 181 IHSHI-IKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLP-ERDVVSCTAIISG---Y 235

Query: 224 KRLELGEVAIVNISRL----MGGDYVLLSNM 250
            +L L E A+    RL    M  +YV  +++
Sbjct: 236 AQLGLDEEALELFRRLQREGMQSNYVTYTSV 266


>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Cucumis sativus]
          Length = 602

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 175/415 (42%), Positives = 243/415 (58%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK--VEPDKFTFASVIYGCARLGALN 58
           +P KDVV+WN +I    RN R  +AL  F  M S     +PDK T   ++  CA L AL 
Sbjct: 188 VPQKDVVAWNVLISCLTRNKRTRDALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALE 247

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H  I +        L  +LI MYS+CG++  A EVFD +   +V  W+AMISG++
Sbjct: 248 FGERIHGYIQQHGYNTESNLCNSLISMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGLS 307

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           ++G   +A   F +M+   V P   TF  +L+ACSHCGLV+EG  +FD MR  + I P +
Sbjct: 308 MNGHGREAIEAFWEMQKNGVEPGDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIAPNV 367

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
            HYG +VDLLGRAG +++AY LI SM + PD  +WR LL ACR      LGE  + ++  
Sbjct: 368 HHYGCIVDLLGRAGMLDQAYELIMSMEVRPDATMWRTLLGACRIHGHGNLGERIVEHLIE 427

Query: 239 LM---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L     GDYVLL N+Y     WD    +R++MK+KG+  +   + +EL GV+HQF   D 
Sbjct: 428 LKSQEAGDYVLLLNIYSSAGNWDKVTELRKLMKEKGIYTTPCCTTIELNGVVHQFAVDDI 487

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SHP    I K L  + ++ K  G+       L  +  ++K   L +HSEKLA+A+G+L T
Sbjct: 488 SHPMKDKIYKQLDEINKQLKIAGYEAEMSSELHRLEPKDKGYALSNHSEKLAIAFGVLAT 547

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            PG  IRI+ N+R C DCH++ K IS +  R ++VRDR RFH F+ G CSC D+W
Sbjct: 548 PPGRTIRIANNIRTCMDCHNFAKYISSVYNRKVVVRDRSRFHHFQEGRCSCNDFW 602



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 109/217 (50%), Gaps = 6/217 (2%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           V  +N+M+  +  +    E L  +R+M    V  D  + +  +  C +L +L     +H 
Sbjct: 92  VSHYNAMLRAYSLSRSPLEGLYMYRDMERQGVRADPLSSSFAVKSCIKLLSLLFGIQIHA 151

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
            I     + + +L  +++D+YS CGK + A ++FD V + DV  WN +IS +  +    D
Sbjct: 152 RIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCLTRNKRTRD 211

Query: 126 ASAIFTKMEMFNVL--PDSITFLGLLTACSHCGLVEEGRKYFDHMRSR-YSIQPQLEHYG 182
           A  +F  M+    L  PD +T L LL AC+    +E G +   +++   Y+ +  L    
Sbjct: 212 ALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALEFGERIHGYIQQHGYNTESNL--CN 269

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +++ +  R G +++AY +   MT E +VV W A++S 
Sbjct: 270 SLISMYSRCGRMDKAYEVFDKMT-EKNVVSWSAMISG 305


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 172/412 (41%), Positives = 251/412 (60%), Gaps = 4/412 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +KD  +W++MI  + R     EAL  F  M    V+ +  +  SV+  CA L +L+H   
Sbjct: 292 EKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQ 351

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  +++ + + +  +++ LI MY KCG +  A+++FD     D+ +WN++I+G A HGL
Sbjct: 352 VHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGL 411

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F +M    +  D +TF+G+L+ACS+ G V+EG + F+ M+S+Y ++P+ EHY 
Sbjct: 412 VEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYA 471

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL--- 239
            MVDLLGRAG + +A  LI  M +E D ++W ALL ACRT   + L EVA   + +L   
Sbjct: 472 CMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPK 531

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG-DRSHP 298
             G Y+LLSN+Y    RW     +R  M+ K V KS G SW+E+   +H F  G    HP
Sbjct: 532 NAGPYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVHMFTGGVSTKHP 591

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           E  +I K+L  L    +  G+ P +  VL DV EEEK  +L HHSE+LA+A+G+LK   G
Sbjct: 592 ELSSIMKMLEKLDGMLREAGYYPDSSFVLHDVDEEEKVRSLGHHSERLAVAFGLLKVPEG 651

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             IR+ KNLR+C DCHS IK+I+++  R II+RD  RFH F+ G CSC DYW
Sbjct: 652 MPIRVMKNLRVCGDCHSAIKLIAKITGREIILRDANRFHHFKDGFCSCRDYW 703



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 112/220 (50%), Gaps = 12/220 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++V+SW +MI G+V+N + D A + F  M     E ++ ++ +++ G  + G +  A
Sbjct: 197 MPRRNVISWTTMISGYVQNGQVDVARKLFEVM----PEKNEVSWTAMLMGYTQGGRIEEA 252

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             + + +  K +    +   A+I  + + G++  A++VFD ++  D   W+AMI      
Sbjct: 253 SELFDAMPVKAV----VACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERK 308

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLE 179
           G   +A  +F  M+   V  +  + + +L+ C+    ++ GR+ + + ++S++     + 
Sbjct: 309 GFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFD--SDVF 366

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               ++ +  + G + +A  +    + + D+V+W ++++ 
Sbjct: 367 VASVLITMYVKCGDLVKARQIFDRFSPK-DIVMWNSIITG 405



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 96/254 (37%), Gaps = 72/254 (28%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPDK +VSWNSM+ G+ +N R  EA   F +M      P++                N  
Sbjct: 42  MPDKGIVSWNSMVAGYFQNNRPREARYLFDKM------PER----------------NTV 79

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W                   LI  Y K   +  A++ FDT+   +V  W AM+ G    
Sbjct: 80  SW-----------------NGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQE 122

Query: 121 GLAADASAIFTKME-------------------------MFNVLP--DSITFLGLLTACS 153
           GL ++A  +F +M                          +F+++P  D +    +++   
Sbjct: 123 GLVSEAETLFWQMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYC 182

Query: 154 HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVW 213
             G + E R+ FD M  R  I      +  M+    + G ++ A  L   M  E + V W
Sbjct: 183 QEGRLAEARELFDEMPRRNVIS-----WTTMISGYVQNGQVDVARKLFEVMP-EKNEVSW 236

Query: 214 RALLSACRTFKRLE 227
            A+L       R+E
Sbjct: 237 TAMLMGYTQGGRIE 250


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 174/415 (41%), Positives = 250/415 (60%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++  SW ++I    RN    EAL  F  M    V P   T  S++  CA L +L+H 
Sbjct: 291 MKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHG 350

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++  + +++  +++ L+ MY KCG++  +K +FD     D+ +WN++ISG A H
Sbjct: 351 KQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASH 410

Query: 121 GLAADASAIFTKMEMF-NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           GL  +A  +F +M +  +  P+ +TF+  L+ACS+ G+VEEG K ++ M S + ++P   
Sbjct: 411 GLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITA 470

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HY  MVD+LGRAG   EA  +I SMT+EPD  VW +LL ACRT  +L++ E     ++ I
Sbjct: 471 HYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEI 530

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQF-KAGDR 295
                G Y+LLSNMY    RW     +R++MK + VRKS G SW E+   +H F + G  
Sbjct: 531 EPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGIN 590

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SHPE ++I KIL  L    +  G+ P     L DV EEEK  +L +HSE+LA+AY +LK 
Sbjct: 591 SHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKL 650

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           S G  IR+ KNLR+C DCH+ IK+IS++  R II+RD  RFH F  G CSC DYW
Sbjct: 651 SEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 110/246 (44%), Gaps = 45/246 (18%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKV----------------------- 37
           MPD++++SWN ++ G+++N   DEA + F  M    V                       
Sbjct: 74  MPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLF 133

Query: 38  ----EPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQ 93
               E +K ++  ++ G  + G ++ A  ++ +I +K    + I   ++I    K G++ 
Sbjct: 134 WKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDK----DNIARTSMIHGLCKEGRVD 189

Query: 94  MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD--SITFLGLLTA 151
            A+E+FD +    V  W  M++G   +    DA  I      F+V+P+   +++  +L  
Sbjct: 190 EAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKI------FDVMPEKTEVSWTSMLMG 243

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
               G +E+  + F+ M     ++P +    AM+  LG+ G I +A  +  SM    D  
Sbjct: 244 YVQNGRIEDAEELFEVM----PVKPVIA-CNAMISGLGQKGEIAKARRVFDSMKERND-A 297

Query: 212 VWRALL 217
            W+ ++
Sbjct: 298 SWQTVI 303



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 28/232 (12%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDK--FTFASVIYGCARLGALNHAY 61
           K + SWNSM+ G+  N    +A + F EM      PD+   ++  ++ G  + G ++ A 
Sbjct: 46  KSISSWNSMVAGYFANLMPRDARKLFDEM------PDRNIISWNGLVSGYMKNGEIDEAR 99

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF-DTVQRNDVSVWNAMISGVAIH 120
            V +L+ E+    N +   AL+  Y   GK+ +A+ +F    ++N VS W  M+ G    
Sbjct: 100 KVFDLMPER----NVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVS-WTVMLIGFLQD 154

Query: 121 GLAADASAIFTKMEMFNVLP--DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           G   DA       +++ ++P  D+I    ++      G V+E R+ FD M  R  I    
Sbjct: 155 GRIDDAC------KLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVIT--- 205

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE 230
             +  MV   G+   +++A  +   M  E   V W ++L       R+E  E
Sbjct: 206 --WTTMVTGYGQNNRVDDARKIFDVMP-EKTEVSWTSMLMGYVQNGRIEDAE 254



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 113/235 (48%), Gaps = 17/235 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++ V++W +M+ G+ +N R D+A + F  M     E  + ++ S++ G  + G +  A
Sbjct: 198 MSERSVITWTTMVTGYGQNNRVDDARKIFDVM----PEKTEVSWTSMLMGYVQNGRIEDA 253

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAI 119
             +  ++  K +    I   A+I    + G+I  A+ VFD++ +RND S W  +I     
Sbjct: 254 EELFEVMPVKPV----IACNAMISGLGQKGEIAKARRVFDSMKERNDAS-WQTVIKIHER 308

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQL 178
           +G   +A  +F  M+   V P   T + +L+ C+    +  G++    + R ++ +   +
Sbjct: 309 NGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYV 368

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI 233
                ++ +  + G + ++  LI       D+++W +++S    +    LGE A+
Sbjct: 369 A--SVLMTMYIKCGELVKS-KLIFDRFPSKDIIMWNSIISG---YASHGLGEEAL 417



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 10/135 (7%)

Query: 83  IDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDS 142
           I   S+ GKI  A+++FD+     +S WN+M++G   + +  DA  +F +M   N+    
Sbjct: 24  ITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNI---- 79

Query: 143 ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
           I++ GL++     G ++E RK FD M  R  +      + A+V      G ++ A  L  
Sbjct: 80  ISWNGLVSGYMKNGEIDEARKVFDLMPERNVVS-----WTALVKGYVHNGKVDVAESLFW 134

Query: 203 SMTMEPDVVVWRALL 217
            M  E + V W  +L
Sbjct: 135 KMP-EKNKVSWTVML 148


>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
 gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 168/414 (40%), Positives = 255/414 (61%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           +  K   SW+SM+        + E L  FR M S + ++ ++    S +  CA  GALN 
Sbjct: 193 LESKTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNL 252

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  ++    ELN I+  +L+DMY KCG +  A  +F  +++ +   ++AMISG+A+
Sbjct: 253 GMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLAL 312

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG    A  +F+KM    + PD + ++ +L ACSH GLV+EGR+ F  M     ++P  E
Sbjct: 313 HGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAE 372

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HYG +VDLLGRAG +EEA   I S+ +E + V+WR  LS CR  + +ELG++A   ++ +
Sbjct: 373 HYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKL 432

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
           S    GDY+L+SN+Y   + WD     R  +  KG++++ G S +EL G  H+F + DRS
Sbjct: 433 SSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRS 492

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+ + I K+L  +  + K EG+ P    +L++V EEEK+  L  HS+K+A+A+G+L T 
Sbjct: 493 HPKCKEIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTP 552

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PG+ I+I++NLR+C DCH++ K IS +  R I+VRDR RFH F+GG CSC DYW
Sbjct: 553 PGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 117/257 (45%), Gaps = 44/257 (17%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D     +N+MI G+V    F+EAL F+ EM+    EPD FT+  ++  C RL ++     
Sbjct: 94  DPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQ 153

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  + +  +E +  +  +LI+MY +CG+++++  VF+ ++    + W++M+S  A  G+
Sbjct: 154 IHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGM 213

Query: 123 ------------------------------AADASAIFTKMEMFNVLPDSITFLGLLTAC 152
                                          A+  A+   M +   L  +I+ L ++   
Sbjct: 214 WSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQT 273

Query: 153 S------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT- 205
           S       CG +++    F  M  R ++      Y AM+  L   G  E A  + + M  
Sbjct: 274 SLVDMYVKCGCLDKALHIFQKMEKRNNLT-----YSAMISGLALHGEGESALRMFSKMIK 328

Query: 206 --MEPDVVVWRALLSAC 220
             +EPD VV+ ++L+AC
Sbjct: 329 EGLEPDHVVYVSVLNAC 345


>gi|115480819|ref|NP_001064003.1| Os09g0573000 [Oryza sativa Japonica Group]
 gi|113632236|dbj|BAF25917.1| Os09g0573000 [Oryza sativa Japonica Group]
          Length = 555

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 169/395 (42%), Positives = 245/395 (62%), Gaps = 10/395 (2%)

Query: 22  FDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN-LIIEKKIELNFILSA 80
           + + LR FR M ++    D  T  +++  CA LGAL+ A W H  L       +   L+ 
Sbjct: 165 YVQVLRLFRTMRTA----DHVTLLALLSACAHLGALHTARWAHAYLATTCSFPITTNLAT 220

Query: 81  ALIDMYSKCGKIQMAKEVFDTV--QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNV 138
           AL++MY +CG +Q A  +F +   +  DV  W  MI+G+A++G + DA  +FT M+  N+
Sbjct: 221 ALLNMYMRCGDVQTACSLFHSTPTRHKDVHTWTVMIAGLALNGFSTDALHLFTHMKDHNI 280

Query: 139 LPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAY 198
            PDS+T   +L+AC+H G+V+EG++    M   Y +QP +EHYG  VDLLGRAG +EEA 
Sbjct: 281 QPDSVTLTAVLSACTHAGMVDEGKRILRRMPLDYHLQPTIEHYGCTVDLLGRAGLLEEAL 340

Query: 199 GLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---MGGDYVLLSNMYCYLK 255
            LI ++  + DV +W ALL ACR  +  E+G++  + I RL     G +V LSN+Y    
Sbjct: 341 ALIRAVPFKADVALWGALLVACRCHRNFEMGQMVAMEILRLDPQHAGAWVFLSNVYAAAG 400

Query: 256 RWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTK 315
           +WD  + VR  MK+  + K  G S +EL GV+++F +GD SHP++  I  +L  + +   
Sbjct: 401 KWDLVQEVRSSMKQHRIHKPPGSSVVELDGVVYEFLSGDHSHPQSDQIYAMLDEIGKTLS 460

Query: 316 SEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIRISKNLRICHDCHS 375
            +G  PAT+LV  D+ EE+KE  +  HSEKLA+A+G++ T  G  IRI KNLRIC DCHS
Sbjct: 461 LKGHKPATKLVTFDIDEEDKEVCISQHSEKLAVAFGLINTRRGAVIRIVKNLRICEDCHS 520

Query: 376 WIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            +K++S +  RVI+VRDR RFH F+ G CSC DYW
Sbjct: 521 VMKVVSEVYDRVIVVRDRNRFHHFKSGSCSCLDYW 555



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 34/224 (15%)

Query: 8   SWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYW---- 62
           S+NS I    R  R   A+  +R MLS S+  P+ +T+  ++  CARL   + +      
Sbjct: 55  SYNSAIRALARGPRPHLAISLYRSMLSHSRSHPNNYTYPPLLAACARLADSDSSSAAAAA 114

Query: 63  -----VHNLIIEKKIE-LNFILSAALIDMYSKCGKIQMAKEVFDTVQRND-VSVWNAMIS 115
                +H  +  + +E  +  + A+L+ +Y+  G +  A++VFD    N  V V      
Sbjct: 115 AAGVALHASLFRRGLESPDRFIRASLLSLYAAAGDLPAARQVFDLSPPNHYVQVLR---- 170

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
                        +F  M       D +T L LL+AC+H G +   R    ++ +  S  
Sbjct: 171 -------------LFRTMRT----ADHVTLLALLSACAHLGALHTARWAHAYLATTCSFP 213

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDVVVWRALLS 218
                  A++++  R G ++ A  L  S  T   DV  W  +++
Sbjct: 214 ITTNLATALLNMYMRCGDVQTACSLFHSTPTRHKDVHTWTVMIA 257



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 12/124 (9%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDV +W  MI G   N    +AL  F  M    ++PD  T  +V+  C   G ++     
Sbjct: 247 KDVHTWTVMIAGLALNGFSTDALHLFTHMKDHNIQPDSVTLTAVLSACTHAGMVDEGKR- 305

Query: 64  HNLIIEKKIELNFILSAAL------IDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISG 116
               I +++ L++ L   +      +D+  + G ++ A  +   V  + DV++W A++  
Sbjct: 306 ----ILRRMPLDYHLQPTIEHYGCTVDLLGRAGLLEEALALIRAVPFKADVALWGALLVA 361

Query: 117 VAIH 120
              H
Sbjct: 362 CRCH 365


>gi|357135729|ref|XP_003569461.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Brachypodium distachyon]
          Length = 595

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 174/413 (42%), Positives = 244/413 (59%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++VVSW+++IGG+        AL  FR  L   VE + FT + ++  CA     +  
Sbjct: 184 MPERNVVSWSALIGGYADAGMHPAALWIFRSALEEAVEVNDFTVSCIVRVCATATLFDLG 243

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   I+  ++ +  + ++L+ +YSKCG +  A  +F      ++ +WNA+++  A H
Sbjct: 244 AQVHARSIKTALDASPFVGSSLVSLYSKCGLVDRAYRIFSAAPERNLGIWNAVLNASAQH 303

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  A A   F +M+     P+ ITFL LLTACSH GLV+EG++YF  M+  Y+I+PQ EH
Sbjct: 304 GHTATAFERFMEMQNDGFRPNYITFLCLLTACSHAGLVDEGKRYFSLMK-EYTIEPQAEH 362

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y AMVDLLGR G I EA  LI SM MEP   VW ALL ACR FK  +   +A   +    
Sbjct: 363 YAAMVDLLGRVGRITEALELIESMPMEPPESVWGALLMACRMFKDADTAAIAAKRLFQTG 422

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G ++LLS+ Y    R   A   R+ M+  GVRK  G SWLE AG +H F +  R H
Sbjct: 423 SRSSGAHMLLSSTYAAAGRHVDAALARKAMRDAGVRKETGLSWLEAAGEVHTFVSNCRRH 482

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P +  I  +L  + ++ +  G++  T  V+ DV+ EEK   L +HSE+LA+  G+L    
Sbjct: 483 PRSDEIYNVLEKVGEKMEGAGYVADTSAVVKDVAREEKCETLGYHSERLAIGLGLLIVPE 542

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH+ IK +S+   RV+I+RD  RFHRFE GLCSCGD+W
Sbjct: 543 GVPIRVMKNLRVCDDCHNAIKYLSKCTGRVVILRDNRRFHRFEDGLCSCGDFW 595



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 12/218 (5%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVE------PDKFTFASVIYGCARLGALNHAYW 62
           W+S+I  F +N     A   FR ML++ V       P      +      R     HA  
Sbjct: 87  WSSLISSFAQNGLPAAAFDAFRRMLAAGVPATDRSIPSAAKAVAAAADSLRPPLAPHA-- 144

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H L  +     +  + +A++DMY+KCG +  A+ +FD +   +V  W+A+I G A  G+
Sbjct: 145 LHGLASKTPFAEDVFVGSAVLDMYAKCGNLLDARRLFDEMPERNVVSWSALIGGYADAGM 204

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
              A  IF       V  +  T   ++  C+   L + G +   H RS  +        G
Sbjct: 205 HPAALWIFRSALEEAVEVNDFTVSCIVRVCATATLFDLGAQV--HARSIKTALDASPFVG 262

Query: 183 -AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            ++V L  + G ++ AY  I S   E ++ +W A+L+A
Sbjct: 263 SSLVSLYSKCGLVDRAY-RIFSAAPERNLGIWNAVLNA 299


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 171/414 (41%), Positives = 254/414 (61%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M DK +VSWN++I G+++N   D AL  FR+M+   ++    +   V   C+ L +L   
Sbjct: 307 MEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLG 366

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H   ++  +E +  ++ +LIDMY+K G I  + +VF+ ++    + WNAMI G  IH
Sbjct: 367 REAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIH 426

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GLA +A  +F +M+     PD +TFLG+LTAC+H GL+ EG +Y D M+S + ++P L+H
Sbjct: 427 GLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKH 486

Query: 181 YGAMVDLLGRAGHIEEAYGLITS-MTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           Y  ++D+LGRAG +++A  ++   M+ E DV +W++LLS+CR  + LE+GE     +  L
Sbjct: 487 YACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFEL 546

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                 +YVLLSN+Y  L +W+    VR+ M +  +RK  G SW+EL   +  F  G+R 
Sbjct: 547 EPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERF 606

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
               + I  +   L  +    G+ P T  V  D+SEEEK   L  HSEKLAL YG++KTS
Sbjct: 607 LDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTS 666

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            GT IR+ KNLRIC DCH+  K+IS+++ R I+VRD  RFH F+ G+CSCGDYW
Sbjct: 667 EGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 720



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 105/218 (48%), Gaps = 10/218 (4%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K V SWN++IGG  ++     +L    +M  S + PD FT  S++  C++L +L     V
Sbjct: 209 KTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEV 268

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  II   +E +  +  +++ +Y  CG++   + +FD ++   +  WN +I+G   +G  
Sbjct: 269 HGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFP 328

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG- 182
             A  +F +M ++ +    I+ + +  ACS    +  GR+        Y+++  LE    
Sbjct: 329 DRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGRE-----AHAYALKHLLEDDAF 383

Query: 183 ---AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              +++D+  + G I ++  +   +  E     W A++
Sbjct: 384 IACSLIDMYAKNGSITQSSKVFNGLK-EKSTASWNAMI 420



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 104/219 (47%), Gaps = 4/219 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSS--KVEPDKFTFASVIYGCARLGALNHA 60
           +K+VVSWN+M+GGF             R+ML+    V+ D+ T  + +  C     L   
Sbjct: 105 NKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSL 164

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++++   N +++ A +  Y+KCG +  A+ VF  ++   V+ WNA+I G A  
Sbjct: 165 KELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQS 224

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                +     +M++  +LPDS T   LL+ACS    +  G++    +  R  ++  L  
Sbjct: 225 NDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFI-IRNWLERDLFV 283

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           Y +++ L    G +     L  +M  +  +V W  +++ 
Sbjct: 284 YLSVLSLYIHCGELCTVQALFDAME-DKSLVSWNTVITG 321



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 109/276 (39%), Gaps = 59/276 (21%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE----PDKFTFASVIYGCARLGALNH 59
           ++ VSWNSMI  F  N   +E+     EM+    +    PD  T  +V+  CAR   +  
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              VH   ++ +++   +L+ AL+DMYSKCG I  A+ +F      +V  WN M+ G + 
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 120 HGLAADASAIFTKMEMF-----NVLPDSITFLGLLTACSH-------------------- 154
            G   D    F  +        +V  D +T L  +  C H                    
Sbjct: 121 EG---DTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFV 177

Query: 155 ---------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199
                          CG +   ++ F  +RS+      +  + A++   G A   +    
Sbjct: 178 YNELVANAFVASYAKCGSLSYAQRVFHGIRSK-----TVNSWNALIG--GHAQSNDPRLS 230

Query: 200 LITSMTME-----PDVVVWRALLSACRTFKRLELGE 230
           L   + M+     PD     +LLSAC   K L LG+
Sbjct: 231 LDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGK 266


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 174/415 (41%), Positives = 253/415 (60%), Gaps = 6/415 (1%)

Query: 1   MPDK-DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           M D+ DVVSWN++I    ++     AL FFR M    V P++ T  +V+  CA   AL  
Sbjct: 490 MEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTE 549

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
              VH+ +    +E N  ++ AL  MY +CG ++ A+E+F+ V    DV ++NAMI+  +
Sbjct: 550 GVIVHDHLRHSGMESNVFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYS 609

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            +GLA +A  +F +M+     PD  +F+ +L+ACSH GL +EG + F  MR  Y I P  
Sbjct: 610 QNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSE 669

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           +HY   VD+LGRAG + +A  LI  M ++P V+VW+ LL ACR ++ ++ G +A   +  
Sbjct: 670 DHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRE 729

Query: 239 LMGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L  GD   YV+LSN+     +WD A  VR  M+ +G+RK  GKSW+E+   +H+F AGDR
Sbjct: 730 LDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKQAGKSWIEIKSRVHEFVAGDR 789

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SHP ++ I + L  L    +  G++P T LVL  V E EKE  L  HSE+LA+A G++ +
Sbjct: 790 SHPRSEEIYRELERLHAEIREIGYVPDTRLVLRKVDEAEKERLLCQHSERLAIALGVMSS 849

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           S  T +R+ KNLR+C DCH+  K IS+++ + I+VRD  RFH F  G CSCGDYW
Sbjct: 850 STDT-VRVMKNLRVCEDCHNATKFISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 115/251 (45%), Gaps = 27/251 (10%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++D+VSWN+ I    ++   D AL  F+ M    V P + T    +  CA++     A  
Sbjct: 190 ERDLVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAKI---RQARA 246

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+++ E  +E   ++S AL   Y++ G +  AKEVFD     DV  WNAM+   A HG 
Sbjct: 247 IHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGH 306

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH-- 180
            ++A+ +F +M    + P  +T +   T CS           F  M    +++  L+   
Sbjct: 307 MSEAALLFARMLHEGIPPSKVTLVNASTGCSSL--------RFGRMIHACALEKGLDRDI 358

Query: 181 --YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS----------ACRTFKRLEL 228
               A++D+  R G  EEA  L   +    + V W  +++          A   F+R++L
Sbjct: 359 VLGNALLDMYTRCGSPEEARHLFEGIP--GNAVSWNTMIAGSSQKGQMKRALELFQRMQL 416

Query: 229 GEVAIVNISRL 239
             +A V  + L
Sbjct: 417 EGMAPVRATYL 427



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 108/222 (48%), Gaps = 8/222 (3%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA----RLGALNHA 60
           + VSWN+MI G  +  +   AL  F+ M    + P + T+ +++   A       A+   
Sbjct: 387 NAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEG 446

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD---TVQRNDVSVWNAMISGV 117
             +H+ I+         +  A++ MY+ CG I  A   F       R+DV  WNA+IS +
Sbjct: 447 RKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSL 506

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           + HG    A   F +M++  V P+ IT + +L AC+    + EG    DH+R    ++  
Sbjct: 507 SQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLR-HSGMESN 565

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +    A+  + GR G +E A  +   + +E DVV++ A+++A
Sbjct: 566 VFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAA 607



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 105/216 (48%), Gaps = 6/216 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D  SW ++I  +  + +   A+  F  M    V  D  TF +V+  CARLG L+    +
Sbjct: 91  RDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSI 150

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  I+E  +E   +L+  L+ +Y  CG +  A  +F+ ++R+ VS WNA I+  A  G  
Sbjct: 151 HAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERMERDLVS-WNAAIAANAQSGDL 209

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  +F +M++  V P  IT +  L+ C+    + + R     +R    ++  L    A
Sbjct: 210 DMALELFQRMQLEGVRPARITLVITLSVCAK---IRQARAIHSIVRE-SGLEQTLVVSTA 265

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +     R GH+++A  +      E DVV W A+L A
Sbjct: 266 LASAYARLGHLDQAKEVF-DRAAERDVVSWNAMLGA 300



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 15/168 (8%)

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
           L+    +H  I+   +E    L   L+ +Y KC  +   +EVF  ++  D + W  +I+ 
Sbjct: 45  LSQGRRIHARIVSLGLEEE--LGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITA 102

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
              HG A  A  +F +M+   V  D++TFL +L AC+  G + +GR         + ++ 
Sbjct: 103 YTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHA-----WIVES 157

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMT-----MEPDVVVWRALLSA 219
            LE    + +LL    HI  + G + S       ME D+V W A ++A
Sbjct: 158 GLEGKSVLANLL---LHIYGSCGCVASAMLLFERMERDLVSWNAAIAA 202


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 161/410 (39%), Positives = 252/410 (61%), Gaps = 3/410 (0%)

Query: 4    KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
            +D+ +W  ++ G+ ++ + ++A++ F +M    V+P++FT AS + GC+R+  L+    +
Sbjct: 596  RDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQL 655

Query: 64   HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
            H++ I+     +  +++AL+DMY+KCG ++ A+ VFD +   D   WN +I G + HG  
Sbjct: 656  HSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQG 715

Query: 124  ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
              A   F  M     +PD +TF+G+L+ACSH GL+EEG+K+F+ +   Y I P +EHY  
Sbjct: 716  GKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYAC 775

Query: 184  MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---M 240
            MVD+LGRAG   E    I  M +  +V++W  +L AC+    +E GE A + +  L   +
Sbjct: 776  MVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEI 835

Query: 241  GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
              +Y+LLSNM+     WD   NVR +M  +GV+K  G SW+E+ G +H F + D SHP+ 
Sbjct: 836  DSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKI 895

Query: 301  QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
            + I   L  L Q+  S G+ P T+ VL +VS+ EK+  L++HSE+LALA+ +L TS    
Sbjct: 896  REIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKT 955

Query: 361  IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI KNLRIC DCH ++K IS +  + ++VRD   FH F+ G CSC ++W
Sbjct: 956  IRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 1005



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 114/219 (52%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++ VSWN+++ GF +    ++ L  F  M  S++   KFT ++V+ GCA  G L   
Sbjct: 290 MPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAG 349

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+L I    EL+  +S  L+DMYSKCG    A +VF  ++  DV  W+A+I+ +   
Sbjct: 350 QIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQK 409

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G + +A+ +F +M    V+P+  T   L++A +  G +  G      +  +Y  +     
Sbjct: 410 GQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACV-CKYGFEYDNTV 468

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A+V +  + G +++   +  + T   D++ W ALLS 
Sbjct: 469 CNALVTMYMKIGSVQDGCRVFEA-TTNRDLISWNALLSG 506



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 127/273 (46%), Gaps = 35/273 (12%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++D++SWN+++ GF  N   D  LR F +ML+    P+ +TF S++  C+ L  ++    
Sbjct: 494 NRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQ 553

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH  I++  ++ N  +  AL+DMY+K   ++ A+ +F+ + + D+  W  +++G A  G 
Sbjct: 554 VHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQ 613

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
              A   F +M+   V P+  T    L+ CS    ++ GR+    M  +      +    
Sbjct: 614 GEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQ-LHSMAIKAGQSGDMFVAS 672

Query: 183 AMVDLLGRAGHIEEAY----GLITSMTME------------------------------P 208
           A+VD+  + G +E+A     GL++  T+                               P
Sbjct: 673 ALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVP 732

Query: 209 DVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
           D V +  +LSAC     +E G+    ++S++ G
Sbjct: 733 DEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYG 765



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 117/238 (49%), Gaps = 16/238 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P++DVVSW ++I GFV       A+  F EM    VE ++FT+A+ +  C+    L   
Sbjct: 189 IPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFG 248

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   I+     +  + +AL+D+Y+KCG++ +A+ VF  + + +   WNA+++G A  
Sbjct: 249 KQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQM 308

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A     +F +M    +     T   +L  C++ G +  G +    +  R  I  +L+ 
Sbjct: 309 GDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAG-QIVHSLAIR--IGCELDE 365

Query: 181 Y--GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS----------ACRTFKRL 226
           +    +VD+  + G   +A  +   +  +PDVV W A+++          A   FKR+
Sbjct: 366 FISCCLVDMYSKCGLAGDALKVFVRIE-DPDVVSWSAIITCLDQKGQSREAAEVFKRM 422



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 108/221 (48%), Gaps = 6/221 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + D DVVSW+++I    +  +  EA   F+ M  S V P++FT AS++     LG L + 
Sbjct: 391 IEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYG 450

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  + +   E +  +  AL+ MY K G +Q    VF+     D+  WNA++SG   +
Sbjct: 451 ESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDN 510

Query: 121 GLAADASAIFTKM--EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
                   IF +M  E FN  P+  TF+ +L +CS    V+ G++    +  + S+    
Sbjct: 511 ETCDTGLRIFNQMLAEGFN--PNMYTFISILRSCSSLSDVDLGKQVHAQI-VKNSLDGND 567

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               A+VD+  +   +E+A  +   + ++ D+  W  +++ 
Sbjct: 568 FVGTALVDMYAKNRFLEDAETIFNRL-IKRDLFAWTVIVAG 607



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 7/201 (3%)

Query: 44  FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           ++ ++  CA  G LN    +H  +I+  I  +  L  +L+++Y+KCG    A +VF  + 
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 104 RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
             DV  W A+I+G    G  + A  +F +M    V  +  T+   L ACS C  +E G++
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQ 250

Query: 164 YFDHMRS-RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRT 222
              H  + +      L    A+VDL  + G +  A  +   M  + + V W ALL+    
Sbjct: 251 V--HAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQ-NAVSWNALLNG--- 304

Query: 223 FKRLELGEVAIVNISRLMGGD 243
           F ++   E  +    R+ G +
Sbjct: 305 FAQMGDAEKVLNLFCRMTGSE 325


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 174/415 (41%), Positives = 253/415 (60%), Gaps = 6/415 (1%)

Query: 1   MPDK-DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           M D+ DVVSWN++I    ++     AL FFR M    V P++ T  +V+  CA   AL  
Sbjct: 490 MEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTE 549

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
              VH+ +    +E N  ++ AL  MY +CG ++ A+E+F+ V    DV ++NAMI+  +
Sbjct: 550 GEIVHDHLRHSGMESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYS 609

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            +GLA +A  +F +M+     PD  +F+ +L+ACSH GL +EG + F  MR  Y I P  
Sbjct: 610 QNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSE 669

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           +HY   VD+LGRAG + +A  LI  M ++P V+VW+ LL ACR ++ ++ G +A   +  
Sbjct: 670 DHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRE 729

Query: 239 LMGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L  GD   YV+LSN+     +WD A  VR  M+ +G+RK  GKSW+E+   +H+F AGDR
Sbjct: 730 LDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKEAGKSWIEIKSRVHEFVAGDR 789

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SHP ++ I + L  L    +  G++P T LVL  V E EKE  L  HSE+LA+A G++ +
Sbjct: 790 SHPRSEEIYRELERLHAEIREIGYVPDTRLVLRKVDEAEKERLLCQHSERLAIALGVMSS 849

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           S  T +R+ KNLR+C DCH+  K IS+++ + I+VRD  RFH F  G CSCGDYW
Sbjct: 850 STDT-VRVMKNLRVCEDCHNATKFISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 108/222 (48%), Gaps = 8/222 (3%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA----RLGALNHA 60
           + VSWN+MI G  +  +   A+  F+ M    + P + T+ +++   A       A+   
Sbjct: 387 NAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEG 446

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD---TVQRNDVSVWNAMISGV 117
             +H+ I+         +  A++ MY+ CG I  A   F       R+DV  WNA+IS +
Sbjct: 447 RKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSL 506

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           + HG    A   F +M++  V P+ IT + +L AC+    + EG    DH+R    ++  
Sbjct: 507 SQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLR-HSGMESN 565

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           L    A+  + GR G +E A  +   + +E DVV++ A+++A
Sbjct: 566 LFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAA 607



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 112/251 (44%), Gaps = 27/251 (10%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++D+VSWN+ I    ++     AL  F+ M    V P + T    +  CA    +  A  
Sbjct: 190 ERDLVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCA---TIRQAQA 246

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H ++ E  +E   ++S AL   Y++ G +  AKEVFD     DV  WNAM+   A HG 
Sbjct: 247 IHFIVRESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGH 306

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH-- 180
            ++A+ +F +M    + P  +T +   T CS           F  M    +++  L+   
Sbjct: 307 MSEAALLFARMLHEGISPSKVTLVNASTGCSSL--------RFGRMIHGCALEKGLDRDI 358

Query: 181 --YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS----------ACRTFKRLEL 228
               A++D+  R G  EEA  L   +    + V W  +++          A   F+R++L
Sbjct: 359 VLGNALLDMYTRCGSPEEARHLFKRIPC--NAVSWNTMIAGSSQKGQMKRAVELFQRMQL 416

Query: 229 GEVAIVNISRL 239
             +A V  + L
Sbjct: 417 EGMAPVRATYL 427



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 105/217 (48%), Gaps = 8/217 (3%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D  SW ++I  +  + +   A+  F  M    V  D  TF +V+  CARLG L+    +
Sbjct: 91  RDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSI 150

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  I+E  ++   +L+  L+ +Y  CG +  A  +F+ ++R+ VS WNA I+  A  G  
Sbjct: 151 HAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKMERDLVS-WNAAIAANAQSGDL 209

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS-IQPQLEHYG 182
             A  +F +M++  V P  IT +  LT C+    + + +    H   R S ++  L    
Sbjct: 210 GIALELFQRMQLEGVRPARITLVIALTVCA---TIRQAQAI--HFIVRESGLEQTLVVST 264

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A+     R GH+ +A  +      E DVV W A+L A
Sbjct: 265 ALASAYARLGHLYQAKEVF-DRAAERDVVSWNAMLGA 300



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 15/168 (8%)

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
           L+    +H  I+   +E    L   L+ +Y KC  +   +EVF  ++  D + W  +I+ 
Sbjct: 45  LSQGRRIHARIVSLGLEEE--LGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITA 102

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
              HG A  A  +F +M+   V  D++TFL +L AC+  G + +GR         + ++ 
Sbjct: 103 YTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHA-----WIVES 157

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSM-----TMEPDVVVWRALLSA 219
            L+    + +LL    HI  + G + S       ME D+V W A ++A
Sbjct: 158 GLKGKSVLANLL---LHIYGSCGCVASAMLLFEKMERDLVSWNAAIAA 202


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 168/412 (40%), Positives = 242/412 (58%), Gaps = 3/412 (0%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P  D+V + S++  + ++ + +EALR + EM    ++PD F  +S++  CA L A     
Sbjct: 375 PIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGK 434

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            VH  I++     +     +L++MY+KCG I+ A   F  +    +  W+AMI G+A HG
Sbjct: 435 QVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHG 494

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              +A  +F +M    V P+ IT + +L AC+H GLV E + YF+ M+  + I+P  EHY
Sbjct: 495 YGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHY 554

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISR 238
             M+DLLGRAG +E A  L+  M  + + +VW ALL A R  K ++LGE A   ++ +  
Sbjct: 555 ACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEP 614

Query: 239 LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
              G +VLL+N+Y  +  WD    VR +MK   V+K  G SWLE+   ++ F  GDRSH 
Sbjct: 615 EKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHS 674

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
            +  I   L  L    K  G++P  E+ L DV   EKE  LYHHSEKLA+A+G++ T PG
Sbjct: 675 RSTEIYAKLDELSDLLKKAGYVPMVEIDLHDVERSEKEQLLYHHSEKLAVAFGLIATPPG 734

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             IR+ KNLRIC DCH+ +K IS+++ R IIVRD  RFH F  G CSCG+YW
Sbjct: 735 APIRVKKNLRICFDCHTVLKFISKIVSREIIVRDTNRFHHFREGSCSCGEYW 786



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 110/219 (50%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +PD+ VVSWN++   +V +    EA+  F +M+ S + P++F+ +S+I  C  L      
Sbjct: 71  IPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQG 130

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +I+   + +   + AL+DMY+K G ++ A  VFD + + D+  WNA+I+G  +H
Sbjct: 131 RKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLH 190

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                A  +  +M    + P+  T    L AC+   L E GR+    +            
Sbjct: 191 EYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLG 250

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            G ++D+  +   +++A  L+  +  E D++ W A++S 
Sbjct: 251 VG-LIDMYSKCNSMDDAR-LVFKLMPERDMIAWNAVISG 287



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 111/217 (51%), Gaps = 2/217 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D+++WN++I G  +N   +EA   F  M +  +  ++ T ++V+   A L A    
Sbjct: 273 MPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMC 332

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L ++   E +  +  +LID Y KCG ++ A  VF+     D+ ++ ++++  A  
Sbjct: 333 RQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQD 392

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  ++ +M+   + PDS     LL AC+     E+G++   H+  ++     +  
Sbjct: 393 GQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHIL-KFGFMSDIFA 451

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             ++V++  + G IE+A    + + +   +V W A++
Sbjct: 452 GNSLVNMYAKCGSIEDASCAFSRIPVR-GIVSWSAMI 487



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 139/336 (41%), Gaps = 56/336 (16%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D+VSWN++I G V +     AL   REM  S + P+ FT +S +  CA +        +H
Sbjct: 176 DIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLH 235

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
           + +I+  +  +  L   LIDMYSKC  +  A+ VF  +   D+  WNA+ISG + +    
Sbjct: 236 SSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDE 295

Query: 125 DASAIFTKMEM----FN------VLP-------------------------DSITFLGLL 149
           +A+++F  M      FN      VL                          D+     L+
Sbjct: 296 EAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLI 355

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT---M 206
                CG VE+  + F+      S    L  + ++V    + G  EEA  L   M    +
Sbjct: 356 DTYGKCGHVEDATRVFEE-----SPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGI 410

Query: 207 EPDVVVWRALLSACRTFKRLELGEVAIVNI------SRLMGGDYVLLSNMYCYLKRWDTA 260
           +PD  V  +LL+AC +    E G+   V+I      S +  G+   L NMY      + A
Sbjct: 411 KPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNS--LVNMYAKCGSIEDA 468

Query: 261 ENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                 +  +G+      SW  + G + Q   G  +
Sbjct: 469 SCAFSRIPVRGI-----VSWSAMIGGLAQHGYGKEA 499



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 88/184 (47%), Gaps = 2/184 (1%)

Query: 37  VEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAK 96
           ++ ++F F SV+  C     L     VH +++    + +  ++ +L+ +Y+KCG    A+
Sbjct: 6   IKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDAR 65

Query: 97  EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
            +FD +    V  WNA+ S      +  +A ++F  M +  + P+  +   ++  C+   
Sbjct: 66  SLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLE 125

Query: 157 LVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRAL 216
              +GRK   ++  +           A+VD+  + G +E+A  +   +  +PD+V W A+
Sbjct: 126 DSVQGRKIHGYL-IKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIA-KPDIVSWNAI 183

Query: 217 LSAC 220
           ++ C
Sbjct: 184 IAGC 187



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P + +VSW++MIGG  ++    EAL+ F++ML   V P+  T  SV+  C   G +  A
Sbjct: 475 IPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEA 534

Query: 61  -YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
            ++ +++ I   IE      A +ID+  + GK++ A E+ + +  + +  VW A++    
Sbjct: 535 KHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAAR 594

Query: 119 IH 120
           IH
Sbjct: 595 IH 596


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 161/410 (39%), Positives = 252/410 (61%), Gaps = 3/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D+ +W  ++ G+ ++ + ++A++ F +M    V+P++FT AS + GC+R+  L+    +
Sbjct: 355 RDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQL 414

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H++ I+     +  +++AL+DMY+KCG ++ A+ VFD +   D   WN +I G + HG  
Sbjct: 415 HSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQG 474

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A   F  M     +PD +TF+G+L+ACSH GL+EEG+K+F+ +   Y I P +EHY  
Sbjct: 475 GKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYAC 534

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---M 240
           MVD+LGRAG   E    I  M +  +V++W  +L AC+    +E GE A + +  L   +
Sbjct: 535 MVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEI 594

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
             +Y+LLSNM+     WD   NVR +M  +GV+K  G SW+E+ G +H F + D SHP+ 
Sbjct: 595 DSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKI 654

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + I   L  L Q+  S G+ P T+ VL +VS+ EK+  L++HSE+LALA+ +L TS    
Sbjct: 655 REIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKT 714

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IRI KNLRIC DCH ++K IS +  + ++VRD   FH F+ G CSC ++W
Sbjct: 715 IRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 764



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 128/275 (46%), Gaps = 36/275 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P++DVVSW ++I GFV    +   LR F +ML+    P+ +TF S++  C+ L  ++  
Sbjct: 252 IPERDVVSWTALITGFVAEG-YGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLG 310

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  I++  ++ N  +  AL+DMY+K   ++ A+ +F+ + + D+  W  +++G A  
Sbjct: 311 KQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQD 370

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A   F +M+   V P+  T    L+ CS    ++ GR+    M  +      +  
Sbjct: 371 GQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQ-LHSMAIKAGQSGDMFV 429

Query: 181 YGAMVDLLGRAGHIEEAY----GLITSMTME----------------------------- 207
             A+VD+  + G +E+A     GL++  T+                              
Sbjct: 430 ASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGT 489

Query: 208 -PDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
            PD V +  +LSAC     +E G+    ++S++ G
Sbjct: 490 VPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYG 524



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 109/218 (50%), Gaps = 7/218 (3%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +++ S N+++ GF      D+  R   ++L    EP+ +TF S++  CA  G LN    +
Sbjct: 154 ENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAI 213

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I+  I  +  L  +L+++Y+KCG    A +VF  +   DV  W A+I+G    G  
Sbjct: 214 HGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYG 273

Query: 124 ADASAIFTKM--EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
           +    IF +M  E FN  P+  TF+ +L +CS    V+ G++    +  + S+       
Sbjct: 274 SGLR-IFNQMLAEGFN--PNMYTFISILRSCSSLSDVDLGKQVHAQI-VKNSLDGNDFVG 329

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            A+VD+  +   +E+A  +   + ++ D+  W  +++ 
Sbjct: 330 TALVDMYAKNRFLEDAETIFNRL-IKRDLFAWTVIVAG 366



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 99/219 (45%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DV  WN  +          EA++ F  M  +++  ++F FAS+I   A LG  ++ 
Sbjct: 50  MPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYG 109

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  + +   E + ++S A + MY K   ++   + F  +   +++  N ++SG    
Sbjct: 110 ESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDT 169

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                   I  ++ +    P+  TF+ +L  C+  G + EG+     +  +  I P    
Sbjct: 170 ETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQV-IKSGINPDSHL 228

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           + ++V++  + G    A  +   +  E DVV W AL++ 
Sbjct: 229 WNSLVNVYAKCGSANYACKVFGEIP-ERDVVSWTALITG 266



 Score = 38.5 bits (88), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 1/130 (0%)

Query: 78  LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFN 137
           L ++L+++Y KC  +Q A++V + +   DV  WN  +S         +A  +F  M    
Sbjct: 26  LWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTR 85

Query: 138 VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEA 197
           +  +   F  L++A +  G    G         +Y  +  +    A V +  +   +E  
Sbjct: 86  IRLNQFIFASLISAAASLGDNHYGES-IHACVCKYGFESDILISNAFVTMYMKTQSVENG 144

Query: 198 YGLITSMTME 207
           +    +M +E
Sbjct: 145 WQFFKAMMIE 154


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 171/416 (41%), Positives = 252/416 (60%), Gaps = 7/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNH 59
           MP K   +WN++I  + +N +   AL  F EM LS   +PD+ T    +   A+LGA++ 
Sbjct: 366 MPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDF 425

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
            +W+H  I +  I LN  L+ +L+DMY+KCG +  A EVF  V+R DV VW+AMI  +A+
Sbjct: 426 GHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAM 485

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G    A  +F+ M    + P+++TF  +L AC+H GLV EG + F+ M   Y I PQ++
Sbjct: 486 YGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQ 545

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY  +VD+ GRAG +E+A   I  M + P   VW ALL AC     +EL E+A  N+  L
Sbjct: 546 HYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLEL 605

Query: 240 MG---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G +VLLSN+Y     W+   N+R++M+   V+K    S +++ G++H+F  GD S
Sbjct: 606 EPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNS 665

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEK--EGNLYHHSEKLALAYGILK 354
           HP +Q I   L  + ++ K  G+ P     L+ +SEE+   E +L  HSEKLA+A+G++ 
Sbjct: 666 HPFSQKIYSKLDEISEKFKPIGYKPDMS-NLLQLSEEDNLMEQSLNVHSEKLAIAFGLIS 724

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T+    IRI KN+RIC DCH++ K++S+L  R I++RDR RFH F GG CSC DYW
Sbjct: 725 TASSQPIRIVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFHHFRGGKCSCLDYW 780



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 112/218 (51%), Gaps = 3/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE-PDKFTFASVIYGCARLGALNH 59
           +P  ++  WN++I G+  ++   ++   F  ML S  E P+KFTF  +    +RL  L+ 
Sbjct: 132 IPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHL 191

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H ++I+  +  +  +  +LI+ Y   G   +A  VF  +   DV  WNAMI+  A+
Sbjct: 192 GSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFAL 251

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            GL   A  +F +MEM +V P+ IT + +L+AC+    +E GR    ++ +       L 
Sbjct: 252 GGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENN-GFTEHLI 310

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              AM+D+  + G I +A  L   M+ E D+V W  +L
Sbjct: 311 LNNAMLDMYVKCGCINDAKDLFNKMS-EKDIVSWTTML 347



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 130/288 (45%), Gaps = 41/288 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KDVVSWN+MI  F      D+AL  F+EM    V+P+  T  SV+  CA+   L   
Sbjct: 234 MPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFG 293

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+ + I       + IL+ A++DMY KCG I  AK++F+ +   D+  W  M+ G A  
Sbjct: 294 RWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKL 353

Query: 121 GLAADASAIFTKME-----MFNVL---------------------------PDSITFLGL 148
           G   +A  IF  M       +N L                           PD +T +  
Sbjct: 354 GNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICA 413

Query: 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
           L A +  G ++ G     +++ ++ I        +++D+  + G++ +A  +  ++  + 
Sbjct: 414 LCASAQLGAIDFGHWIHVYIK-KHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERK- 471

Query: 209 DVVVWRALLSACRTFKRLELGEVAIVNISRLMGG----DYVLLSNMYC 252
           DV VW A++ A   + +   G+ A+   S ++      + V  +N+ C
Sbjct: 472 DVYVWSAMIGALAMYGQ---GKAALDLFSSMLEAYIKPNAVTFTNILC 516



 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 3/134 (2%)

Query: 87  SKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM-EMFNVLPDSITF 145
           S C  +  AK VF+ + + ++  WN +I G A       +  IF  M    +  P+  TF
Sbjct: 117 SSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTF 176

Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
             L  A S   ++  G      M  + S+   L    ++++  G +G  + A+ + T+M 
Sbjct: 177 PFLFKAASRLKVLHLG-SVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMP 235

Query: 206 MEPDVVVWRALLSA 219
            + DVV W A+++A
Sbjct: 236 GK-DVVSWNAMINA 248


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 160/411 (38%), Positives = 250/411 (60%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++D+ SW  +I G+ +  + ++A+++FR+M    ++P+++T AS + GC+ +  L +   
Sbjct: 316 NRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQ 375

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H + ++     +  + +AL+D+Y KCG ++ A+ +F  +   D+  WN +ISG + HG 
Sbjct: 376 LHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQ 435

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
              A   F  M    ++PD  TF+G+L+ACS  GLVEEG+K FD M   Y I P +EHY 
Sbjct: 436 GEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYA 495

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            MVD+LGRAG   E    I  M + P  ++W  +L AC+    ++ GE A   +  +  +
Sbjct: 496 CMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPM 555

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           M   Y+LLSN++    RWD   N+R +M  +G++K  G SW+E+ G +H F + D SHP+
Sbjct: 556 MDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPK 615

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
            + I   L  L Q   S G++P TE+VL +VS +EK  +LY+HSE+LAL++ +L T+   
Sbjct: 616 IREIYAKLDKLGQSLMSIGYVPKTEVVLHNVSNKEKMEHLYYHSERLALSFALLSTNAVK 675

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI KNLRIC DCH ++K+IS +  + I+VRD  RFH F+ G CSC D W
Sbjct: 676 PIRIFKNLRICEDCHDFMKLISDITNQEIVVRDIRRFHHFKRGTCSCQDRW 726



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 115/219 (52%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K+ VSWN+++ G+ +     + L+ F +M   + +  KFT ++V+ GCA  G+L   
Sbjct: 11  MPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGSLREG 70

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L +    E++  L  +L+DMYSKCG +  A +VF  ++  DV  W+AMI+G+   
Sbjct: 71  KVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQ 130

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A+ +F  M      P+  T   L++  ++ G +  G+     +  +Y  +     
Sbjct: 131 GHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCI-CKYGFESDNLV 189

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              ++ +  ++  +E+   +  +MT  PD+V W ALLS 
Sbjct: 190 SNPLIMMYMKSRCVEDGNKVFEAMT-NPDLVSWNALLSG 227



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 109/225 (48%), Gaps = 14/225 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M + D+VSWN+++ GF  +       R F +ML    +P+ FTF SV+  C+ L      
Sbjct: 213 MTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFG 272

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  II+   + +  +  AL+DMY+K   ++ A   FD +   D+  W  +ISG A  
Sbjct: 273 KQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQT 332

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
             A  A   F +M+   + P+  T    L+ CSH   +E GR+        +++  +  H
Sbjct: 333 DQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQL-------HAVAVKAGH 385

Query: 181 YG------AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +G      A+VDL G+ G +E A  +   + +  D+V W  ++S 
Sbjct: 386 FGDIFVGSALVDLYGKCGCMEHAEAIFKGL-ISRDIVSWNTIISG 429



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 101/217 (46%), Gaps = 2/217 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + DVV+W++MI G  +     EA   F  M      P++FT +S++     +G L +   
Sbjct: 114 NPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQS 173

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  I +   E + ++S  LI MY K   ++   +VF+ +   D+  WNA++SG      
Sbjct: 174 IHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQT 233

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
                 IF +M +    P+  TF+ +L +CS     E G++   H+    S         
Sbjct: 234 CGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGT- 292

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A+VD+  +A  +E+A G+     +  D+  W  ++S 
Sbjct: 293 ALVDMYAKARCLEDA-GVAFDRLVNRDIFSWTVIISG 328



 Score = 46.2 bits (108), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 7/123 (5%)

Query: 99  FDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLV 158
           F   ++N VS WNA+++G A  G       +F KM+         T   +L  C++ G +
Sbjct: 9   FGMPEKNGVS-WNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGSL 67

Query: 159 EEGRKYFD-HMRSRYSIQPQLEHYG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRAL 216
            EG+      +RS   I    E  G ++VD+  + G + +A  + T +   PDVV W A+
Sbjct: 68  REGKVLHALALRSGCEID---EFLGCSLVDMYSKCGTVYDALKVFTKIR-NPDVVAWSAM 123

Query: 217 LSA 219
           ++ 
Sbjct: 124 ITG 126


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 171/414 (41%), Positives = 254/414 (61%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M DK +VSWN++I G+++N   D AL  FR+M+   ++    +   V   C+ L +L   
Sbjct: 557 MEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLG 616

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H   ++  +E +  ++ +LIDMY+K G I  + +VF+ ++    + WNAMI G  IH
Sbjct: 617 REAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIH 676

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GLA +A  +F +M+     PD +TFLG+LTAC+H GL+ EG +Y D M+S + ++P L+H
Sbjct: 677 GLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKH 736

Query: 181 YGAMVDLLGRAGHIEEAYGLITS-MTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           Y  ++D+LGRAG +++A  ++   M+ E DV +W++LLS+CR  + LE+GE     +  L
Sbjct: 737 YACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFEL 796

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                 +YVLLSN+Y  L +W+    VR+ M +  +RK  G SW+EL   +  F  G+R 
Sbjct: 797 EPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERF 856

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
               + I  +   L  +    G+ P T  V  D+SEEEK   L  HSEKLAL YG++KTS
Sbjct: 857 LDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTS 916

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            GT IR+ KNLRIC DCH+  K+IS+++ R I+VRD  RFH F+ G+CSCGDYW
Sbjct: 917 EGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 113/279 (40%), Gaps = 59/279 (21%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE----PDKFTFASVIYGCARLGA 56
           MP++++VSWNSMI  F  N   +E+     EM+    +    PD  T  +V+  CAR   
Sbjct: 248 MPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCARERE 307

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
           +     VH   ++ +++   +L+ AL+DMYSKCG I  A+ +F      +V  WN M+ G
Sbjct: 308 IGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGG 367

Query: 117 VAIHGLAADASAIFTKMEMF-----NVLPDSITFLGLLTACSH----------------- 154
            +  G   D    F  +        +V  D +T L  +  C H                 
Sbjct: 368 FSAEG---DTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQ 424

Query: 155 ------------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196
                             CG +   ++ F  +RS+      +  + A++   G A   + 
Sbjct: 425 EFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSK-----TVNSWNALIG--GHAQSNDP 477

Query: 197 AYGLITSMTME-----PDVVVWRALLSACRTFKRLELGE 230
              L   + M+     PD     +LLSAC   K L LG+
Sbjct: 478 RLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGK 516



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 105/221 (47%), Gaps = 7/221 (3%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNHAYW 62
           K++  WN++I  + RN  +DE L  F EM+S+  + PD FT+  VI  CA +  +     
Sbjct: 149 KNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLA 208

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH L+++  +  +  +  AL+  Y   G +  A ++FD +   ++  WN+MI   + +G 
Sbjct: 209 VHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGF 268

Query: 123 AADASAIFTKMEMFN----VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           + ++  +  +M   N     +PD  T + +L  C+    +  G K       +  +  +L
Sbjct: 269 SEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLG-KGVHGWAVKLRLDKEL 327

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               A++D+  + G I  A  +I  M    +VV W  ++  
Sbjct: 328 VLNNALMDMYSKCGCITNAQ-MIFKMNNNKNVVSWNTMVGG 367



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 105/218 (48%), Gaps = 10/218 (4%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K V SWN++IGG  ++     +L    +M  S + PD FT  S++  C++L +L     V
Sbjct: 459 KTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEV 518

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  II   +E +  +  +++ +Y  CG++   + +FD ++   +  WN +I+G   +G  
Sbjct: 519 HGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFP 578

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG- 182
             A  +F +M ++ +    I+ + +  ACS    +  GR+        Y+++  LE    
Sbjct: 579 DRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGRE-----AHAYALKHLLEDDAF 633

Query: 183 ---AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              +++D+  + G I ++  +   +  E     W A++
Sbjct: 634 IACSLIDMYAKNGSITQSSKVFNGLK-EKSTASWNAMI 670



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 107/222 (48%), Gaps = 10/222 (4%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSS--KVEPDKFTFASVIYGCARLGALNHA 60
           +K+VVSWN+M+GGF             R+ML+    V+ D+ T  + +  C     L   
Sbjct: 355 NKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSL 414

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++++   N +++ A +  Y+KCG +  A+ VF  ++   V+ WNA+I G A  
Sbjct: 415 KELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQS 474

Query: 121 G---LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
               L+ DA     +M++  +LPDS T   LL+ACS    +  G++    +  R  ++  
Sbjct: 475 NDPRLSLDAH---LQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFI-IRNWLERD 530

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           L  Y +++ L    G +     L  +M  +  +V W  +++ 
Sbjct: 531 LFVYLSVLSLYIHCGELCTVQALFDAME-DKSLVSWNTVITG 571



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 90/200 (45%), Gaps = 10/200 (5%)

Query: 77  ILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM-EM 135
           +L   +I MY+ CG    ++ VFD ++  ++  WNA+IS  + + L  +    F +M   
Sbjct: 121 VLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMIST 180

Query: 136 FNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGRAGHI 194
            ++LPD  T+  ++ AC+  G+ + G     H +  +  +   +    A+V   G  G +
Sbjct: 181 TDLLPDHFTYPCVIKACA--GMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFV 238

Query: 195 EEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM--GGDYVLLSNMYC 252
            +A  L   M  E ++V W +++   R F      E + + +  +M   GD   + ++  
Sbjct: 239 TDALQLFDIMP-ERNLVSWNSMI---RVFSDNGFSEESFLLLGEMMEENGDGAFMPDVAT 294

Query: 253 YLKRWDTAENVREIMKKKGV 272
            +         REI   KGV
Sbjct: 295 LVTVLPVCAREREIGLGKGV 314


>gi|15228954|ref|NP_191214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180975|sp|Q9LXY5.1|PP284_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56550
 gi|7594533|emb|CAB88058.1| putative protein [Arabidopsis thaliana]
 gi|91806586|gb|ABE66020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646013|gb|AEE79534.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 581

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 168/417 (40%), Positives = 253/417 (60%), Gaps = 10/417 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+VSWN MI  F      ++AL  ++ M +  V  D +T  +++  CA + ALN  
Sbjct: 168 MPVRDLVSWNVMICCFSHVGLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMG 227

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H +  + + E    +S ALIDMY+KCG ++ A  VF+ +++ DV  WN+MI G  +H
Sbjct: 228 VMLHRIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVH 287

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A + F KM    V P++ITFLGLL  CSH GLV+EG ++F+ M S++ + P ++H
Sbjct: 288 GHGVEAISFFRKMVASGVRPNAITFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKH 347

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDL GRAG +E +  +I + +   D V+WR LL +C+  + LELGEVA   +V + 
Sbjct: 348 YGCMVDLYGRAGQLENSLEMIYASSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLE 407

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               GDYVL++++Y          ++R++++   ++   G SW+E+   +H+F   D+ H
Sbjct: 408 AFNAGDYVLMTSIYSAANDAQAFASMRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMH 467

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPA----TELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           PE+  I   LG +I R    G+ P     T   L D      + +   HSEKLA+AYG++
Sbjct: 468 PESAVIYSELGEVINRAILAGYKPEDSNRTAPTLSDRCLGSADTS---HSEKLAIAYGLM 524

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           +T+ GT +RI+KNLR+C DCHS+ K +S+   R IIVRDR+RFH F  G+CSC DYW
Sbjct: 525 RTTAGTTLRITKNLRVCRDCHSFTKYVSKAFNREIIVRDRVRFHHFADGICSCNDYW 581



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 11/220 (5%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE-PDKFTFASVIYGCARLGALNHAY 61
           D     WN +I GF  ++    ++ F+  ML S V  PD FTF   +  C R+ ++    
Sbjct: 68  DPSTSDWNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCL 127

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H  +I      + I++ +L+  YS  G +++A +VFD +   D+  WN MI   +  G
Sbjct: 128 EIHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVG 187

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH- 180
           L   A +++ +M    V  DS T + LL++C+H   +  G      M  R +   + E  
Sbjct: 188 LHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGV-----MLHRIACDIRCESC 242

Query: 181 ---YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
                A++D+  + G +E A G+   M  + DV+ W +++
Sbjct: 243 VFVSNALIDMYAKCGSLENAIGVFNGMR-KRDVLTWNSMI 281


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 175/412 (42%), Positives = 249/412 (60%), Gaps = 7/412 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD+V+W + I  +V+     EAL   ++M+   + PD  T   VI  C+ L +   A+ V
Sbjct: 172 KDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIV 231

Query: 64  HNLIIEKKIELNFILS--AALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
           H  II      N +L+   ALID+Y KCG +  A++VFD +Q  ++  W+AMISG  +HG
Sbjct: 232 HG-IITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHG 290

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              +A  +F +M+  +V PD ITF+ +L+ACSH GLV EG + F+ M   + + P+ EHY
Sbjct: 291 WGREALNLFDQMKA-SVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHY 349

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV---AIVNISR 238
             MVD+LGRAG ++EA   I  M + P+  VW ALL ACR    ++L E+   A+ ++  
Sbjct: 350 ACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDP 409

Query: 239 LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
              G YV+L N+Y    +   A+++R +MK +GV+K  G S +E+   ++ F AGDRSHP
Sbjct: 410 HNAGRYVILYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHP 469

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           +   I   L  L+ R + EG+ P    VL DV EE KE  LY HSEKLA+ +G+L   PG
Sbjct: 470 QTDLIYSELERLMDRIRQEGYTPDINFVLHDVDEETKESMLYLHSEKLAIVFGLLNLGPG 529

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + IRI KNLR+C DCH+  K IS++  R I+VRD  RFH F+ G CSC DYW
Sbjct: 530 SVIRIRKNLRVCGDCHTATKFISKVTGREIVVRDAHRFHHFKNGACSCRDYW 581



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 120/258 (46%), Gaps = 46/258 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPDK+ VSW+++IG  +++ R  E    FR+MLS    P +    +++   A + +   A
Sbjct: 71  MPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSR---GAILNAMACVRSHEEA 127

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V+ +++E  ++ +  + +A   M+++CG++++A+++FD +   D+  W   I      
Sbjct: 128 DDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKA 187

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACS--------------------------- 153
            +  +A  +  +M +  + PD+IT LG++ ACS                           
Sbjct: 188 DMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAV 247

Query: 154 ---------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
                     CG +   RK FD M+ R  I      + AM+   G  G   EA  L   M
Sbjct: 248 ETALIDLYVKCGSLTYARKVFDGMQERNIIT-----WSAMISGYGMHGWGREALNLFDQM 302

Query: 205 --TMEPDVVVWRALLSAC 220
             +++PD + + ++LSAC
Sbjct: 303 KASVKPDHITFVSILSAC 320



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 93/236 (39%), Gaps = 42/236 (17%)

Query: 32  MLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK 91
           ML   ++PD FTF  +I  C+ L        +H  +++   +    +S +LI MY KC K
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
            +++++VFD +   +   W+A+I          +  ++F +M      P     L  + A
Sbjct: 61  YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAM-A 119

Query: 152 C---------------------------------SHCGLVEEGRKYFDHMRSRYSIQPQL 178
           C                                 + CG VE  RK FD + S+      L
Sbjct: 120 CVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSK-----DL 174

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELGEV 231
             +   ++   +A    EA GL+  M ++   PD +    ++ AC T    +L  +
Sbjct: 175 VTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHI 230



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 76/147 (51%), Gaps = 15/147 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++++++W++MI G+  +    EAL  F +M +S V+PD  TF S++  C+  G +   
Sbjct: 271 MQERNIITWSAMISGYGMHGWGREALNLFDQMKAS-VKPDHITFVSILSACSHSGLVAEG 329

Query: 61  YWVHNLIIEKKIELNFILS------AALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAM 113
           +   N      +  +F ++      A ++D+  + GK+  A +  + +  R + +VW A+
Sbjct: 330 WECFN-----SMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGAL 384

Query: 114 ISGVAIHGLAADASAIFTKMEMFNVLP 140
           +    IH L  D + +  +  +F++ P
Sbjct: 385 LGACRIH-LNVDLAEMVAR-ALFDLDP 409


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 165/414 (39%), Positives = 249/414 (60%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KDV++W  M   + +N    EAL+ F+EM      P   T  +V+  CA L AL   
Sbjct: 368 MGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKG 427

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ IIE +  +  ++  ALI+MY KCGK+  A  VF+ + + D+ VWN+M+   A H
Sbjct: 428 RQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQH 487

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +   +F +M++  V  D+++F+ +L+A SH G V +G +YF  M   +SI P  E 
Sbjct: 488 GYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPEL 547

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMT-MEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           YG +VDLLGRAG I+EA  ++  ++   PD ++W  LL ACRT  + +  + A   ++  
Sbjct: 548 YGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLER 607

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YV+LSN+Y     WD    +R++M+ +GV+K  G+S +E+   +H+F  GDRS
Sbjct: 608 DPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRS 667

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP    I   L  L    ++ G++P T+++L DV +E KE  L++HSE+LA+A+G++ T 
Sbjct: 668 HPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLISTP 727

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PGT +R+ KNLR+C DCH+  K IS+L  R I+VRD  RFH F+ G CSC DYW
Sbjct: 728 PGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 781



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 136/278 (48%), Gaps = 18/278 (6%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDV +W  MIG + +   +D AL  F +M    V P K T+ +++  CA   +L     +
Sbjct: 68  KDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEI 127

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  I+++  E +  +  ALI+MY+KCG ++ A + F  ++  DV  W AMI+    H   
Sbjct: 128 HGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQF 187

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
           A A  ++ +M++  V+P+ IT   +  A      + EG K+   + S   ++  +    +
Sbjct: 188 ALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEG-KFVYGLVSSGVMESDVRVMNS 246

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS----------ACRTFKRLELGEVAI 233
            V++ G AG + +A  L   M ++ DVV W  +++          A R F RL+   V  
Sbjct: 247 AVNMFGNAGLLGDARRLFEDM-VDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKA 305

Query: 234 VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKG 271
            +I+      +VL+ N+Y  L      + + E++K+ G
Sbjct: 306 NDIT------FVLMLNVYTSLTSLAKGKVIHELVKEAG 337



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 116/220 (52%), Gaps = 4/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D+DVV+WN +I  +V+N  F EA+R F  +    V+ +  TF  ++     L +L   
Sbjct: 267 MVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKG 326

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L+ E   + + +++ AL+ +Y +C     A ++F  +   DV  W  M    A +
Sbjct: 327 KVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQN 386

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
           G   +A  +F +M++    P S T + +L  C+H   +++GR+   H + +R+ ++  +E
Sbjct: 387 GFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVE 446

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A++++ G+ G + EA  +   M  + D++VW ++L A
Sbjct: 447 --TALINMYGKCGKMAEAMSVFEKMA-KRDILVWNSMLGA 483



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 96/192 (50%), Gaps = 2/192 (1%)

Query: 38  EPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE 97
           +PD   F +++  C+    ++H   VH  + ++  E N ++   LI MY++CG +  A++
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 98  VFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL 157
           VF+ ++R DV  W  MI      G    A  +F +M+  +V+P  +T++ +L AC+    
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 158 VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           +++G +    +  +   +  +    A++++  + G +  A+     +    DVV W A++
Sbjct: 121 LKDGMEIHGQILQQ-GFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHR-DVVSWTAMI 178

Query: 218 SACRTFKRLELG 229
           +AC    +  L 
Sbjct: 179 AACVQHDQFALA 190


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 163/409 (39%), Positives = 248/409 (60%), Gaps = 3/409 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +  SWN++IGG ++N R ++AL     M +S  +P++ T  SV+  C  L +L     +H
Sbjct: 279 NYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIH 338

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             I       +   + AL+ MY+KCG +++++ VF  + + D   WN MI   ++HG   
Sbjct: 339 GYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGE 398

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           +A  +F +M    V P+S+TF G+L+ CSH  LV+EG   FD M   +S++P  +H+  M
Sbjct: 399 EALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCM 458

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMG 241
           VD+L RAG +EEAY  I  M +EP    W ALL  CR +K +ELG +A   +  I     
Sbjct: 459 VDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIESDNP 518

Query: 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
           G+YVLLSN+    K W  A   R++M+ +GV K+ G SW+++   +H F  GD+S+ ++ 
Sbjct: 519 GNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQVRNRVHTFVVGDKSNDQSD 578

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
            I + L  + ++ +  G+LP T+ VL DV +EEKE  L +HSEKLA+A+G+L  +  + I
Sbjct: 579 EIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQEEKEEVLCNHSEKLAVAFGVLNLNGESSI 638

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           R+ KNLRIC DCH+ IK +++++   IIVRD +RFH F  GLCSC D+W
Sbjct: 639 RVFKNLRICGDCHNAIKFMAKIVGVKIIVRDSLRFHHFRDGLCSCQDFW 687



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 142/366 (38%), Gaps = 81/366 (22%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DV+SW SM   +V      EAL  FR+M  +   P+  T +S++  C  L  L   
Sbjct: 139 MPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSG 198

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDV------------- 107
             VH  ++   +  N  +S+AL++MY+ C  I+ A+ VFD++ R D              
Sbjct: 199 REVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLN 258

Query: 108 ----------------------SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145
                                 + WNA+I G   +G    A  + ++M+     P+ IT 
Sbjct: 259 KECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITI 318

Query: 146 LGLLTACSH-----------------------------------CGLVEEGRKYFDHMRS 170
             +L AC++                                   CG +E  R+ F  M  
Sbjct: 319 TSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTK 378

Query: 171 RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLE 227
           R ++      +  M+      G+ EEA  L   M    + P+ V +  +LS C   + ++
Sbjct: 379 RDTVS-----WNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVD 433

Query: 228 LGEVAIVNISR--LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAG 285
            G +   ++SR   +  D    S M   L R    E   E +KK  +  + G +W  L G
Sbjct: 434 EGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAG-AWGALLG 492

Query: 286 VIHQFK 291
               +K
Sbjct: 493 GCRVYK 498



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 107/230 (46%), Gaps = 3/230 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           +P  D+ +W  +I    ++ R  EA++++ +      VEPDK    SV   CA L  + +
Sbjct: 37  IPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLSVAKACASLRDVMN 96

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
           A  VH   I      + +L  ALIDMY KC   + A+ VF+ +   DV  W +M S    
Sbjct: 97  AKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVN 156

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            GL  +A   F KM +    P+S+T   +L AC+    ++ GR+    +  R  +   + 
Sbjct: 157 CGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFV-VRNGMGGNVF 215

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG 229
              A+V++      I +A  +  SM+   D V W  L++A    K  E G
Sbjct: 216 VSSALVNMYASCLSIRQAQLVFDSMSRR-DTVSWNVLITAYFLNKECEKG 264



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 88/236 (37%), Gaps = 48/236 (20%)

Query: 78  LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFN 137
           L+   I +YS  G +Q A+ +FD + + D+  W  +IS +  HG + +A   +      N
Sbjct: 13  LALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKN 72

Query: 138 -VLPDSITFLGLLTACS-----------------------------------HCGLVEEG 161
            V PD +  L +  AC+                                    C   E  
Sbjct: 73  CVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGA 132

Query: 162 RKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLS 218
           R  F+ M  R  I      + +M       G + EA G    M +    P+ V   ++L 
Sbjct: 133 RLVFEGMPFRDVIS-----WTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILP 187

Query: 219 ACRTFKRLELG-EVAIVNISRLMGGDYVL---LSNMYCYLKRWDTAENVREIMKKK 270
           AC   K L+ G EV    +   MGG+  +   L NMY        A+ V + M ++
Sbjct: 188 ACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRR 243


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 167/413 (40%), Positives = 249/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M DK+ V WN+M+ G+ +N   +EAL  FR+MLS  +EPD+   AS++  C++L AL   
Sbjct: 578 MGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLG 637

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   ++  +  +  ++ +L+DMY+K G +  ++ +F+ +   +V+ WN MI+G  +H
Sbjct: 638 KEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVH 697

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F  M+  +  PD  TFLG+L AC H GLV EG  Y   M++ Y ++P+LEH
Sbjct: 698 GQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEH 757

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV---AIVNIS 237
           Y  ++D+LGRAG + EA   I  M  EPD  +W +LLS+  T+  LE+GE     ++ + 
Sbjct: 758 YACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALE 817

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 Y+LLSN+Y    +WD    VR+ MK   ++K  G SW+EL G ++ F AG+ S+
Sbjct: 818 ANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSN 877

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P +  I K+   L ++    G+ P    VL ++ E EK   L  HSEK+A+ +G L T  
Sbjct: 878 PSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEKRKILKGHSEKVAICFGFLNTKE 937

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT +RISKNLRIC DCH+  K IS+  +R I++RD  RFH F+ G+CSCGDYW
Sbjct: 938 GTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFKKGICSCGDYW 990



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 114/220 (51%), Gaps = 5/220 (2%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAY 61
           +K++  WN+++ G+VRN  +DEA+  F E++S ++ +PD FTF  +I  C     ++   
Sbjct: 171 NKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGK 230

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            VH + ++  + ++  +  A+I +Y KCG +  A E+FD +   ++  WN++I G + +G
Sbjct: 231 SVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENG 290

Query: 122 LAADASAIFTKM--EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
              +A   F  +      ++PD  T + LL  CS  G V+ G      M  +  +  +L 
Sbjct: 291 FWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGM-VIHGMAVKLGLVHELM 349

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A++D+  + G + EA  L   +     VV W +++ A
Sbjct: 350 VCNALIDMYSKCGCLSEAAILFRKIE-NKSVVSWNSMIGA 388



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 87/163 (53%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K V SWN++IGG  +N    +AL F+ EM    + PD F+  S++  C RLG L + 
Sbjct: 477 MNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYG 536

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  ++   +E+N  ++ +L+ +Y  C K    +  F+T+   +   WNAM+SG + +
Sbjct: 537 KEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQN 596

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
            L  +A ++F +M    + PD I    +L ACS    +  G++
Sbjct: 597 ELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKE 639



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 122/297 (41%), Gaps = 47/297 (15%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK--VEPDKFTFASVIYGCARLGALN 58
           + +K VVSWNSMIG + R     E     R+M   +  +E ++ T  +++  C     L 
Sbjct: 374 IENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELL 433

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H   +    +   +++ A I  Y+KCG +  A+ VF  +    VS WNA+I G A
Sbjct: 434 SLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHA 493

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVE------------------- 159
            +G    A   + +M    +LPD  + + LL AC   GL++                   
Sbjct: 494 QNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSF 553

Query: 160 ----------------EGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
                            GR YF+ M  + S+      + AM+    +     EA  L   
Sbjct: 554 VAVSLLSLYFHCSKPFYGRTYFETMGDKNSV-----CWNAMLSGYSQNELPNEALSLFRQ 608

Query: 204 MT---MEPDVVVWRALLSACRTFKRLELG-EVAIVNI-SRLMGGDYVLLSNMYCYLK 255
           M    +EPD +   ++L AC     L LG EV    + + LM  ++V  S M  Y K
Sbjct: 609 MLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAK 665



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 4/156 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK--VEPDKFTFASVIYGCARLGALN 58
           MP+++++SWNS+I GF  N  + EA R FR +L S   + PD  T  +++  C+  G ++
Sbjct: 271 MPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVD 330

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H + ++  +    ++  ALIDMYSKCG +  A  +F  ++   V  WN+MI   +
Sbjct: 331 VGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYS 390

Query: 119 IHGLAADASAIFTKMEMFNVL--PDSITFLGLLTAC 152
             G   +   +  KM M   L   + +T L LL AC
Sbjct: 391 REGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 93/189 (49%), Gaps = 18/189 (9%)

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
           L +  +   +F+L+  LI MYS CG    ++ VFD +   ++  WNA++SG   + L  +
Sbjct: 133 LCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDE 192

Query: 126 ASAIFTKMEMFNVL---PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             AI T +E+ +V    PD+ TF  L+ AC+    +  G K    M  +  +   L    
Sbjct: 193 --AIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLG-KSVHGMAVKMGLIMDLFVGN 249

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRAL----------LSACRTFKR-LELGEV 231
           AM+ L G+ G ++EA  L   M  E +++ W +L          L A R F+  LE G+ 
Sbjct: 250 AMIALYGKCGFLDEAVELFDKMP-EQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDG 308

Query: 232 AIVNISRLM 240
            I +++ ++
Sbjct: 309 LIPDVATMV 317


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 164/413 (39%), Positives = 244/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D+D+V+W +MI  + ++ R  E    F ++L S + P++FTF+ V+  CA   +    
Sbjct: 264 MVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELG 323

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +     +     ++AL+ MYSKCG +  A+ VF    + D+  W ++I+G A +
Sbjct: 324 KKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQN 383

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A   F  +      PD ITF+G+L+AC+H GLV++G  YF  ++ +Y +    +H
Sbjct: 384 GQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADH 443

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE---VAIVNIS 237
           Y  ++DLL R+G  +EA  +I+ M+M+PD  +W +LL  CR    L+L +    A+  I 
Sbjct: 444 YACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIE 503

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 YV L+N+Y     W     +R+ M  +GV K  G SW+ +   +H F  GD SH
Sbjct: 504 PENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSH 563

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+++ I++ LG L +R K EGF+P T  VL DV +E+KE NL +HSEKLA+A+GI+ T  
Sbjct: 564 PKSKEINEFLGKLSKRMKEEGFVPDTNFVLHDVEDEQKEQNLSYHSEKLAVAFGIISTPE 623

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT I++ KNLR C DCH+ IK IS++  R IIVRD  RFH FE G CSC DYW
Sbjct: 624 GTPIKVFKNLRTCVDCHTAIKFISKITNRKIIVRDSNRFHFFEDGHCSCRDYW 676



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 113/220 (51%), Gaps = 3/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNH 59
           MP++D  SW +MI G+VR+ R +EAL  FR M  S   + +KFT +S +   A +  L  
Sbjct: 162 MPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRI 221

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  I+   ++ + ++ +AL DMY KCG I+ A+ +FD +   D+  W AMI     
Sbjct: 222 GKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQ 281

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            G   +   +F  +    + P+  TF G+L AC++    E G+K   +M +R    P   
Sbjct: 282 DGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYM-TRVGFDPFSF 340

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A+V +  + G++  A  +    T +PD+  W +L++ 
Sbjct: 341 AASALVHMYSKCGNMVSAERVFKE-TPQPDLFSWTSLIAG 379



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/252 (20%), Positives = 101/252 (40%), Gaps = 49/252 (19%)

Query: 10  NSMIGGFVRNARFDEALRFF---------REMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            +++     + RFDEA+             ++L    +P    ++++I  C +   L   
Sbjct: 30  TTLVPHLCNHKRFDEAIHILCQQNRLKEALQILHQIDKPSASVYSTLIQSCIKSRLLQQG 89

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  I          +   L++MY+KC  +  ++++FD +   D+  WN +ISG A  
Sbjct: 90  KKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKM 149

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR--------- 171
           GL  +A ++F KM       D+ ++  +++         E  + F  M+           
Sbjct: 150 GLLQEAKSLFDKMPE----RDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFT 205

Query: 172 ----------------------YSIQPQLEH----YGAMVDLLGRAGHIEEAYGLITSMT 205
                                 Y ++  L+     + A+ D+ G+ G IEEA  +   M 
Sbjct: 206 VSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKM- 264

Query: 206 MEPDVVVWRALL 217
           ++ D+V W A++
Sbjct: 265 VDRDIVTWTAMI 276


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 167/413 (40%), Positives = 247/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KDV+SW ++I G V+N   ++AL +F+E+   K+ P++    S++   A+LG L + 
Sbjct: 226 MPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYG 285

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H++    +  +   L  AL+DMY+KCG I  ++ +FD +   D   WN MI G+A H
Sbjct: 286 KRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATH 345

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A A+F K       P ++TF+G+LTACS  GLV EG+ +F  M   Y I+P++EH
Sbjct: 346 GLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEH 405

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV---AIVNIS 237
           YG MVDLL RAG + +A  +I  M   PD V+W ++L +C+    +ELGE     ++ + 
Sbjct: 406 YGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLIQMD 465

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YV L+ ++  L++W+    VR +M ++   K  G S +E  G +H+F AGD+ H
Sbjct: 466 PTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAEGRVHRFVAGDKEH 525

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
                I K+L  +  R  + G+      VL D+ EEEKE  +  HSE+LA+A+G+L T  
Sbjct: 526 ERTTEIYKMLEIMGVRIAAAGYSANVSSVLHDIEEEEKENAIKEHSERLAIAFGLLVTKD 585

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KNLR+C DCH   K+IS +  R IIVRD  RFH F+ G+CSC DYW
Sbjct: 586 GDCIRIIKNLRVCGDCHEVSKIISLVFEREIIVRDGSRFHHFKKGICSCQDYW 638



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 103/251 (41%), Gaps = 37/251 (14%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVE-PDKFTFASVIYGCARLGALNHAYWVH 64
           V + N+MI  FV+      ++  +  M  S V  P+K T   V+  C+   A+     V 
Sbjct: 97  VFATNNMIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQ 156

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN-DVSVWNAMISGVAIHGLA 123
             +I+     +  +  ALI +Y  C +++ AK+VFD V  + DV  WN+MI G    G  
Sbjct: 157 THVIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQI 216

Query: 124 ADASAIFTKMEMFNVL-------------------------------PDSITFLGLLTAC 152
           + A  +F +M   +V+                               P+    + LL A 
Sbjct: 217 SVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAA 276

Query: 153 SHCGLVEEGRKYFDHMRS-RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           +  G +E G++      S R+ +   L    A+VD+  + G I+E+  L   M  E D  
Sbjct: 277 AQLGTLEYGKRIHSIANSLRFPMTASLG--TALVDMYAKCGCIDESRFLFDRMP-EKDKW 333

Query: 212 VWRALLSACRT 222
            W  ++    T
Sbjct: 334 SWNVMICGLAT 344


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 171/428 (39%), Positives = 250/428 (58%), Gaps = 21/428 (4%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREML----------------SSKVEPDKFTFASV 47
           +DVVSWN++I G V      EA +   EM                 + +  P+  T  ++
Sbjct: 451 RDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTL 510

Query: 48  IYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDV 107
           + GCA L A      +H   +   +E +  + +AL+DMY+KCG +  ++ VFD + R +V
Sbjct: 511 LPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNV 570

Query: 108 SVWNAMISGVAIHGLAADASAIFTKMEMFN-VLPDSITFLGLLTACSHCGLVEEGRKYFD 166
             WN +I    +HGL  +A A+F +M       P+ +TF+  L ACSH GLV+ G + F 
Sbjct: 571 ITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFH 630

Query: 167 HMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM-EPDVVVWRALLSACRTFKR 225
            M   + ++P  + +  +VD+LGRAG ++EAY +ITSM   E  V  W +LL ACR  + 
Sbjct: 631 GMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRN 690

Query: 226 LELGEVAIVNISRLMGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLE 282
           +ELGEVA   +  L  G+   YVLL N+Y     WD +  VR  M+++GV K  G SW+E
Sbjct: 691 VELGEVAAERLFELEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIE 750

Query: 283 LAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHH 342
           L G IH+F AG+ SHP +  +   + +L +R + EG+ P T  VL DV E+EK   L +H
Sbjct: 751 LDGAIHRFMAGESSHPASAEVHAHMDALWERMRREGYAPDTSCVLHDVDEDEKAAMLRYH 810

Query: 343 SEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGG 402
           SEKLA+A+G+L+  PG  IR++KNLR+C+DCH   K +S+++ R I++RD  RFH F  G
Sbjct: 811 SEKLAIAFGLLRAPPGAAIRVAKNLRVCNDCHEAAKFMSKMVGRDIVLRDVRRFHHFRDG 870

Query: 403 LCSCGDYW 410
            CSCGDYW
Sbjct: 871 SCSCGDYW 878



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 114/224 (50%), Gaps = 14/224 (6%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           DVV+WN+MI   V+  R  EA+    +M+S  V PD  TFAS +  C+RL  L     +H
Sbjct: 246 DVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMH 305

Query: 65  NLII-EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR--NDVSVWNAMISGVAIHG 121
            +++ +  +  N  +++AL+DMY+   K+  A+ VFD V      + +WNAMI G A  G
Sbjct: 306 AVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAG 365

Query: 122 LAADASAIFTKMEM-FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           +  +A  +F++ME      P   T  G+L AC+      EG    + M   Y ++  +  
Sbjct: 366 MDEEALELFSRMEAEAGCAPSETTMSGVLPACAR----SEGFAGKEAMHG-YVVKRGMAG 420

Query: 181 ----YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
                 A++D+  R G ++ A   I +M    DVV W  L++ C
Sbjct: 421 NRFVQNALMDMYARLGEMDVAR-RIFAMIDPRDVVSWNTLITGC 463



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 119/258 (46%), Gaps = 22/258 (8%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNHA 60
           P + +  WN+MI G+ +    +EAL  F  M   +   P + T + V+  CAR       
Sbjct: 347 PSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGK 406

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  ++++ +  N  +  AL+DMY++ G++ +A+ +F  +   DV  WN +I+G  + 
Sbjct: 407 EAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQ 466

Query: 121 GLAADASAIFTKM----------------EMFNVLPDSITFLGLLTACSHCGLVEEGRKY 164
           G AA+A  + T+M                E    +P++IT + LL  C+       G++ 
Sbjct: 467 GHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEI 526

Query: 165 FDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFK 224
             +   R++++  +    A+VD+  + G +  +  +   +    +V+ W  L+ A   + 
Sbjct: 527 HGYA-VRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRR-NVITWNVLIMA---YG 581

Query: 225 RLELGEVAIVNISRLMGG 242
              LG+ A+     +  G
Sbjct: 582 MHGLGDEAVALFDEMAAG 599



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 132/326 (40%), Gaps = 60/326 (18%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCA--------RL 54
           +D VS+NS+I       +++ AL   R+ML+  + +   FT  SV+  C+        RL
Sbjct: 131 RDAVSYNSLISALCLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRL 190

Query: 55  GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR------NDVS 108
           G   HA+ +    +++  E  F  + AL+ MY++ G +  A+ +F T          DV 
Sbjct: 191 GREAHAFALKRGFLDEGRE-RFPFN-ALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVV 248

Query: 109 VWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKY---- 164
            WN MIS +   G  A+A  +   M    V PD +TF   L ACS   ++  GR+     
Sbjct: 249 TWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVV 308

Query: 165 -------------------------FDHMRSRYSIQP----QLEHYGAMVDLLGRAGHIE 195
                                        R  + + P    QL  + AM+    +AG  E
Sbjct: 309 LKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDE 368

Query: 196 EAYGLITSMTME----PDVVVWRALLSACRTFKRLELGEVAIVN--ISRLMGGDYVL--- 246
           EA  L + M  E    P       +L AC   +    G+ A+    + R M G+  +   
Sbjct: 369 EALELFSRMEAEAGCAPSETTMSGVLPACARSEGFA-GKEAMHGYVVKRGMAGNRFVQNA 427

Query: 247 LSNMYCYLKRWDTAENVREIMKKKGV 272
           L +MY  L   D A  +  ++  + V
Sbjct: 428 LMDMYARLGEMDVARRIFAMIDPRDV 453



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/124 (20%), Positives = 65/124 (52%), Gaps = 4/124 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           +P ++V++WN +I  +  +   DEA+  F EM +  +  P++ TF + +  C+  G ++ 
Sbjct: 565 LPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDR 624

Query: 60  AYWV-HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRND--VSVWNAMISG 116
              + H +  +  ++    L A ++D+  + G++  A  +  +++  +  VS W++++  
Sbjct: 625 GLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGA 684

Query: 117 VAIH 120
             +H
Sbjct: 685 CRLH 688


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  338 bits (866), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 171/415 (41%), Positives = 249/415 (60%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML--SSKVEPDKFTFASVIYGCARLGALN 58
           MP K+ VSW++MI  F +N    +AL  F+ M+  +    P+  T  +V+  CA L AL 
Sbjct: 244 MPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALE 303

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H  I+ + ++    +  ALI MY +CG+I M + VFD ++  DV  WN++IS   
Sbjct: 304 QGKLIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYG 363

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG    A  IF  M      P  I+F+ +L ACSH GLVEEG+  F+ M S+Y I P +
Sbjct: 364 MHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGM 423

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVN 235
           EHY  MVDLLGRA  ++EA  LI  M  EP   VW +LL +CR    +EL E A   +  
Sbjct: 424 EHYACMVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFE 483

Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           +     G+YVLL+++Y   K W  A++V ++++ +G++K  G SW+E+   ++ F + D 
Sbjct: 484 LEPRNAGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDE 543

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
            +P+ + I  +L  L    K++G++P T +VL D+ EEEKE  +  HSEKLA+A+G++ T
Sbjct: 544 HNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINT 603

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             G  IRI KNLR+C DCH+  K IS+   R I+VRD  RFH F+ G+CSCGDYW
Sbjct: 604 VKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFKDGVCSCGDYW 658



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 12/224 (5%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA----RLGALN 58
           ++ +  WN++           E L  + +M    +  D+FT+  V+  C      +  L 
Sbjct: 141 ERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQ 200

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H  I+    E N  +   L+D+Y+K G +  A  VF  +   +   W+AMI+  A
Sbjct: 201 KGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFA 260

Query: 119 IHGLAADASAIFTKM--EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM--RSRYSI 174
            + +   A  +F  M  E  + +P+S+T + +L AC+    +E+G+    ++  R   SI
Sbjct: 261 KNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSI 320

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
            P L    A++ + GR G I     +  +M    DVV W +L+S
Sbjct: 321 LPVL---NALITMYGRCGEILMGQRVFDNMK-NRDVVSWNSLIS 360



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 109/240 (45%), Gaps = 11/240 (4%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIE 69
           N +I    +     +A+     +L  +  P + TF  +I  CA+  +L+    VH  ++ 
Sbjct: 51  NQLIQSLCKGGNLKQAIH----LLCCEPNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVS 106

Query: 70  KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAI 129
              + +  L+  LI+MY + G I  A++VFD  +   + VWNA+   +A+ G   +   +
Sbjct: 107 SGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDL 166

Query: 130 FTKMEMFNVLPDSITFLGLLTACSHCGL----VEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           + +M    +  D  T+  +L AC    L    +++G++   H+  R+  +  +     ++
Sbjct: 167 YVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHIL-RHGYEANIHVMTTLL 225

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYV 245
           D+  + G +  A  +  +M  + + V W A++ AC     + +  + +  +  L   D V
Sbjct: 226 DVYAKFGSVSYANSVFCAMPTK-NFVSWSAMI-ACFAKNEMPMKALELFQLMMLEAHDSV 283


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  338 bits (866), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 166/410 (40%), Positives = 248/410 (60%), Gaps = 5/410 (1%)

Query: 5    DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
            D ++WN+++ GF ++   +EALR F  M    ++ + FTF S +   +    +     VH
Sbjct: 616  DNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVH 675

Query: 65   NLIIEKKIELNFILSAALIDMYSKCGKIQMA-KEVFDTVQRNDVSVWNAMISGVAIHGLA 123
             +I +   +    +  ALI MY+KCG I  A K+  +   +N+VS WNA+I+  + HG  
Sbjct: 676  AVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS-WNAIINAYSKHGFG 734

Query: 124  ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            ++A   F +M   NV P+ +T +G+L+ACSH GLV++G  YF+ M S Y + P+ EHY  
Sbjct: 735  SEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVC 794

Query: 184  MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD 243
            +VD+L RAG +  A   I  M ++PD +VWR LLSAC   K +E+GE A  ++  L   D
Sbjct: 795  VVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPED 854

Query: 244  ---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
               YVLLSN+Y   K+WD  +  R+ MK+KGV+K  G+SW+E+   IH F  GD++HP A
Sbjct: 855  SATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLA 914

Query: 301  QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
              I +    L +R    G++     +L ++  E+K+  ++ HSEKLA+++G+L       
Sbjct: 915  DEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVP 974

Query: 361  IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            I + KNLR+C+DCH+WIK +S++  R IIVRD  RFH FEGG CSC DYW
Sbjct: 975  INVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1024



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 4/217 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++VV WN M+  +        + R FR+M   ++ P+++T+ S++  C RLG L     +
Sbjct: 413 ENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQI 472

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H+ II+   +LN  + + LIDMY+K GK+  A ++       DV  W  MI+G   +   
Sbjct: 473 HSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFD 532

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS-IQPQLEHYG 182
             A   F +M    +  D +     ++AC+    ++EG++   H ++  S     L    
Sbjct: 533 DKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI--HAQACVSGFSSDLPFQN 590

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A+V L  R G IEE+Y L    T   D + W AL+S 
Sbjct: 591 ALVTLYSRCGKIEESY-LAFEQTEAGDNIAWNALVSG 626



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 104/216 (48%), Gaps = 2/216 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDVVSW +MI G+ +    D+AL  FR+ML   +  D+    + +  CA L AL     +
Sbjct: 514 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI 573

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H          +     AL+ +YS+CGKI+ +   F+  +  D   WNA++SG    G  
Sbjct: 574 HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNN 633

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F +M    +  ++ TF   + A S    +++G++    + ++     + E   A
Sbjct: 634 EEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQ-VHAVITKTGYDSETEVCNA 692

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++ +  + G I +A      ++ + + V W A+++A
Sbjct: 693 LISMYAKCGSISDAEKQFLEVSTKNE-VSWNAIINA 727



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 118/239 (49%), Gaps = 14/239 (5%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD  SW +MI G  +N    EA+R F +M    + P  + F+SV+  C ++ +L     +
Sbjct: 211 KDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQL 270

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H L+++     +  +  AL+ +Y   G +  A+ +F  + + D   +N +I+G++  G  
Sbjct: 271 HGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYG 330

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYG 182
             A  +F +M +  + PDS T   L+ ACS  G +  G++   +  +  ++   ++E  G
Sbjct: 331 EKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIE--G 388

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA----------CRTFKRLELGEV 231
           A+++L  +   IE A        +E +VV+W  +L A           R F+++++ E+
Sbjct: 389 ALLNLYAKCADIETALDYFLETEVE-NVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEI 446



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 116/256 (45%), Gaps = 38/256 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG--ALN 58
           MP++ + +WN MI          E    F  M+S  V P++ TF+ V+  C R G  A +
Sbjct: 106 MPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC-RGGSVAFD 164

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H  I+ + +  + ++   LID+YS+ G + +A+ VFD ++  D S W AMISG++
Sbjct: 165 VVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLS 224

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK--------------- 163
            +   A+A  +F  M +  ++P    F  +L+AC     +E G +               
Sbjct: 225 KNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTY 284

Query: 164 --------YF--------DHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM--- 204
                   YF        +H+ S  S Q     Y  +++ L + G+ E+A  L   M   
Sbjct: 285 VCNALVSLYFHLGNLISAEHIFSNMS-QRDAVTYNTLINGLSQCGYGEKAMELFKRMHLD 343

Query: 205 TMEPDVVVWRALLSAC 220
            +EPD     +L+ AC
Sbjct: 344 GLEPDSNTLASLVVAC 359



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 106/221 (47%), Gaps = 6/221 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D V++N++I G  +    ++A+  F+ M    +EPD  T AS++  C+  G L   
Sbjct: 309 MSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRG 368

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H    +     N  +  AL+++Y+KC  I+ A + F   +  +V +WN M+    + 
Sbjct: 369 QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLL 428

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               ++  IF +M++  ++P+  T+  +L  C   G +E G +    +        QL  
Sbjct: 429 DDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQI---IKTNFQLNA 485

Query: 181 Y--GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           Y    ++D+  + G ++ A+ ++     + DVV W  +++ 
Sbjct: 486 YVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAG 525



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 96/234 (41%), Gaps = 45/234 (19%)

Query: 37  VEPDKFTFASVIYGCARL-GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMA 95
           + P+  T   ++ GC +  G+L+    +H+ I++  ++ N  LS  L D Y   G +  A
Sbjct: 40  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGA 99

Query: 96  KEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC--- 152
            +VFD +    +  WN MI  +A   L  +   +F +M   NV P+  TF G+L AC   
Sbjct: 100 FKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGG 159

Query: 153 ---------------------------------SHCGLVEEGRKYFDHMRSRYSIQPQLE 179
                                            S  G V+  R+ FD +R +        
Sbjct: 160 SVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK-----DHS 214

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSM---TMEPDVVVWRALLSACRTFKRLELGE 230
            + AM+  L +     EA  L   M    + P    + ++LSAC+  + LE+GE
Sbjct: 215 SWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGE 268



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY-W 62
           K+ VSWN++I  + ++    EAL  F +M+ S V P+  T   V+  C+ +G ++    +
Sbjct: 716 KNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAY 775

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIH 120
             ++  E  +         ++DM ++ G +  AKE    +  + D  VW  ++S   +H
Sbjct: 776 FESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVH 834


>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  338 bits (866), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 169/411 (41%), Positives = 251/411 (61%), Gaps = 4/411 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNHAYW 62
           K   SW+SM    V    + E L  FREM   + ++ ++    S +  CA  GALN    
Sbjct: 197 KSAASWSSMFSACVGMGMWSECLMLFREMCRETNLKAEESGMVSALSACANTGALNLGMS 256

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  ++    ELN I+  +L+DMY KCG I  A  +F  +++ +   ++AMISG A+HG 
Sbjct: 257 IHGFLLRNISELNIIVKTSLVDMYVKCGCIDNALHIFQKMEKRNNLTYSAMISGFALHGE 316

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
              A  +F++M    + PD + ++ LL ACSH GLV+EGR+ F  M     ++P  EHYG
Sbjct: 317 GESALRMFSEMIKEGLEPDHVVYVSLLNACSHSGLVKEGRRVFGEMLKEGKVEPTAEHYG 376

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG- 241
            +VDLLGRAG +EEA   I S+ +E + VVWR+ LS CR  + +ELG++A   + +L   
Sbjct: 377 CLVDLLGRAGLLEEALETIQSIPIEQNDVVWRSFLSQCRVHQNIELGQIAAQELLKLCSH 436

Query: 242 --GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             GDY+L+SNMY     WD     R  +  KG++++ G S +++ G  H+F + DRSHP+
Sbjct: 437 NPGDYLLISNMYSQAHMWDDVARSRTEIAIKGLKQTPGFSTVKVKGKTHRFVSQDRSHPQ 496

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
            + I K+L  +  + K EG+ P    +L++V EEEK+  L  HS+K+A+A+ +L T PG+
Sbjct: 497 CKEIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFALLYTPPGS 556

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            I+I++NLR+C DCH++ K IS +  R I+VRDR RFH F+GG CSC DYW
Sbjct: 557 IIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 607



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 114/257 (44%), Gaps = 44/257 (17%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D     + +MI G+V    F+ AL F+ EM+   +EPD FT+  ++  C RL A+     
Sbjct: 95  DPCTFDFKTMIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCLLKACTRLKAIREGKQ 154

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  + +  +E +  +  +LI+MY +CG+++++  VF+ ++    + W++M S     G+
Sbjct: 155 IHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAASWSSMFSACVGMGM 214

Query: 123 AADASAIFTKM-EMFNVLPDSITFLGLLTACSH--------------------------- 154
            ++   +F +M    N+  +    +  L+AC++                           
Sbjct: 215 WSECLMLFREMCRETNLKAEESGMVSALSACANTGALNLGMSIHGFLLRNISELNIIVKT 274

Query: 155 --------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT- 205
                   CG ++     F  M  R ++      Y AM+      G  E A  + + M  
Sbjct: 275 SLVDMYVKCGCIDNALHIFQKMEKRNNLT-----YSAMISGFALHGEGESALRMFSEMIK 329

Query: 206 --MEPDVVVWRALLSAC 220
             +EPD VV+ +LL+AC
Sbjct: 330 EGLEPDHVVYVSLLNAC 346



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  ++ +++++MI GF  +   + ALR F EM+   +EPD   + S++  C+  G +   
Sbjct: 296 MEKRNNLTYSAMISGFALHGEGESALRMFSEMIKEGLEPDHVVYVSLLNACSHSGLVKEG 355

Query: 61  YWVH-NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT--VQRNDVSVWNAMISGV 117
             V   ++ E K+E        L+D+  + G ++ A E   +  +++NDV VW + +S  
Sbjct: 356 RRVFGEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEQNDV-VWRSFLSQC 414

Query: 118 AIH 120
            +H
Sbjct: 415 RVH 417


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  338 bits (866), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 166/410 (40%), Positives = 248/410 (60%), Gaps = 5/410 (1%)

Query: 5    DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
            D ++WN+++ GF ++   +EALR F  M    ++ + FTF S +   +    +     VH
Sbjct: 656  DNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVH 715

Query: 65   NLIIEKKIELNFILSAALIDMYSKCGKIQMA-KEVFDTVQRNDVSVWNAMISGVAIHGLA 123
             +I +   +    +  ALI MY+KCG I  A K+  +   +N+VS WNA+I+  + HG  
Sbjct: 716  AVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS-WNAIINAYSKHGFG 774

Query: 124  ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            ++A   F +M   NV P+ +T +G+L+ACSH GLV++G  YF+ M S Y + P+ EHY  
Sbjct: 775  SEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVC 834

Query: 184  MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD 243
            +VD+L RAG +  A   I  M ++PD +VWR LLSAC   K +E+GE A  ++  L   D
Sbjct: 835  VVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPED 894

Query: 244  ---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
               YVLLSN+Y   K+WD  +  R+ MK+KGV+K  G+SW+E+   IH F  GD++HP A
Sbjct: 895  SATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLA 954

Query: 301  QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
              I +    L +R    G++     +L ++  E+K+  ++ HSEKLA+++G+L       
Sbjct: 955  DEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVP 1014

Query: 361  IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            I + KNLR+C+DCH+WIK +S++  R IIVRD  RFH FEGG CSC DYW
Sbjct: 1015 INVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 4/217 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++VV WN M+  +        + R FR+M   ++ P+++T+ S++  C RLG L     +
Sbjct: 453 ENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQI 512

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H+ II+   +LN  + + LIDMY+K GK+  A ++       DV  W  MI+G   +   
Sbjct: 513 HSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFD 572

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS-IQPQLEHYG 182
             A   F +M    +  D +     ++AC+    ++EG++   H ++  S     L    
Sbjct: 573 DKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI--HAQACVSGFSSDLPFQN 630

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A+V L  R G IEE+Y L    T   D + W AL+S 
Sbjct: 631 ALVTLYSRCGKIEESY-LAFEQTEAGDNIAWNALVSG 666



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 104/216 (48%), Gaps = 2/216 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDVVSW +MI G+ +    D+AL  FR+ML   +  D+    + +  CA L AL     +
Sbjct: 554 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI 613

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H          +     AL+ +YS+CGKI+ +   F+  +  D   WNA++SG    G  
Sbjct: 614 HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNN 673

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F +M    +  ++ TF   + A S    +++G++    + ++     + E   A
Sbjct: 674 EEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQ-VHAVITKTGYDSETEVCNA 732

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           ++ +  + G I +A      ++ + + V W A+++A
Sbjct: 733 LISMYAKCGSISDAEKQFLEVSTKNE-VSWNAIINA 767



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 118/239 (49%), Gaps = 14/239 (5%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD  SW +MI G  +N    EA+R F +M    + P  + F+SV+  C ++ +L     +
Sbjct: 251 KDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQL 310

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H L+++     +  +  AL+ +Y   G +  A+ +F  + + D   +N +I+G++  G  
Sbjct: 311 HGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYG 370

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYG 182
             A  +F +M +  + PDS T   L+ ACS  G +  G++   +  +  ++   ++E  G
Sbjct: 371 EKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIE--G 428

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA----------CRTFKRLELGEV 231
           A+++L  +   IE A        +E +VV+W  +L A           R F+++++ E+
Sbjct: 429 ALLNLYAKCADIETALDYFLETEVE-NVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEI 486



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 116/256 (45%), Gaps = 38/256 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG--ALN 58
           MP++ + +WN MI          E    F  M+S  V P++ TF+ V+  C R G  A +
Sbjct: 146 MPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC-RGGSVAFD 204

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H  I+ + +  + ++   LID+YS+ G + +A+ VFD ++  D S W AMISG++
Sbjct: 205 VVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLS 264

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK--------------- 163
            +   A+A  +F  M +  ++P    F  +L+AC     +E G +               
Sbjct: 265 KNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTY 324

Query: 164 --------YF--------DHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM--- 204
                   YF        +H+ S  S Q     Y  +++ L + G+ E+A  L   M   
Sbjct: 325 VCNALVSLYFHLGNLISAEHIFSNMS-QRDAVTYNTLINGLSQCGYGEKAMELFKRMHLD 383

Query: 205 TMEPDVVVWRALLSAC 220
            +EPD     +L+ AC
Sbjct: 384 GLEPDSNTLASLVVAC 399



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 106/221 (47%), Gaps = 6/221 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D V++N++I G  +    ++A+  F+ M    +EPD  T AS++  C+  G L   
Sbjct: 349 MSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRG 408

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H    +     N  +  AL+++Y+KC  I+ A + F   +  +V +WN M+    + 
Sbjct: 409 QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLL 468

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               ++  IF +M++  ++P+  T+  +L  C   G +E G +    +        QL  
Sbjct: 469 DDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQI---IKTNFQLNA 525

Query: 181 Y--GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           Y    ++D+  + G ++ A+ ++     + DVV W  +++ 
Sbjct: 526 YVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAG 565



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 96/234 (41%), Gaps = 45/234 (19%)

Query: 37  VEPDKFTFASVIYGCARL-GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMA 95
           + P+  T   ++ GC +  G+L+    +H+ I++  ++ N  LS  L D Y   G +  A
Sbjct: 80  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGA 139

Query: 96  KEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC--- 152
            +VFD +    +  WN MI  +A   L  +   +F +M   NV P+  TF G+L AC   
Sbjct: 140 FKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGG 199

Query: 153 ---------------------------------SHCGLVEEGRKYFDHMRSRYSIQPQLE 179
                                            S  G V+  R+ FD +R +        
Sbjct: 200 SVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK-----DHS 254

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSM---TMEPDVVVWRALLSACRTFKRLELGE 230
            + AM+  L +     EA  L   M    + P    + ++LSAC+  + LE+GE
Sbjct: 255 SWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGE 308



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY-W 62
           K+ VSWN++I  + ++    EAL  F +M+ S V P+  T   V+  C+ +G ++    +
Sbjct: 756 KNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAY 815

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIH 120
             ++  E  +         ++DM ++ G +  AKE    +  + D  VW  ++S   +H
Sbjct: 816 FESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVH 874


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  338 bits (866), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 166/413 (40%), Positives = 249/413 (60%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  ++ VSWN++I G  R +  ++AL  F+ ML     P  F++AS+   C+  G L   
Sbjct: 222 LESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQG 281

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH  +I+   +L       L+DMY+K G I  A+++FD + + DV  WN++++  A H
Sbjct: 282 KWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQH 341

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A   F +M    + P+ I+FL +LTACSH GL++EG  Y++ M+ +  I P+  H
Sbjct: 342 GFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMK-KDGIVPEAWH 400

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  +VDLLGRAG +  A   I  M +EP   +W+ALL+ACR  K  ELG  A  ++  L 
Sbjct: 401 YVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELD 460

Query: 241 G---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G +V+L N+Y    RW+ A  VR+ MK+ GV+K    SW+E+   IH F A D  H
Sbjct: 461 PDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERH 520

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I +    ++ + K  G++P T  V++ V ++E+E NL +HSEK+ALA+ +L T P
Sbjct: 521 PQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPP 580

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G+ I I KN+R+C DCH+ IK+ S+++ R IIVRD  RFH F+ G CSC DYW
Sbjct: 581 GSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 118/223 (52%), Gaps = 10/223 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA--RLGALN 58
           MP +D V+W ++I G+ ++ R  +AL FF +ML     P++FT +SVI   A  R G   
Sbjct: 121 MPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCG 180

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGV 117
           H   +H   ++   + N  + +AL+D+Y++ G +  A+ VFD ++ RNDVS WNA+I+G 
Sbjct: 181 HQ--LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS-WNALIAGH 237

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           A       A  +F  M      P   ++  L  ACS  G +E+G+    +M    S +  
Sbjct: 238 ARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIK--SGEKL 295

Query: 178 LEHYG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +   G  ++D+  ++G I +A  +   +    DVV W +LL+A
Sbjct: 296 VAFAGNTLLDMYAKSGSIHDARKIFDRLAKR-DVVSWNSLLTA 337



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 96/211 (45%), Gaps = 20/211 (9%)

Query: 23  DEALRF----------FREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKI 72
           DE+L+F            ++  S +  D+  + +++  C     L     VH  I++   
Sbjct: 32  DESLKFPSNDLLLRTSSNDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIF 91

Query: 73  ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTK 132
             + ++   L++MY+KCG ++ A++VF+ + + D   W  +ISG + H    DA   F +
Sbjct: 92  RHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQ 151

Query: 133 MEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE---HYG-AMVDLL 188
           M  F   P+  T   ++ A +      E R    H    + ++   +   H G A++DL 
Sbjct: 152 MLRFGYSPNEFTLSSVIKAAA-----AERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLY 206

Query: 189 GRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            R G +++A  +  ++    D V W AL++ 
Sbjct: 207 TRYGLMDDAQLVFDALESRND-VSWNALIAG 236


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  338 bits (866), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 168/413 (40%), Positives = 254/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  K+VVSW +++  + +N  F+EAL FF EM    + P+++TFA ++  CA + AL H 
Sbjct: 291 LQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHG 350

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I +   E + I+  ALI+MYSK G I+ A +VF  +   D   W+AMI G++ H
Sbjct: 351 KLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHH 410

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  +F +M      P  +TF+G+L+AC+H G V+EG  Y + +  +  I+P +EH
Sbjct: 411 GLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEH 470

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  +V LL +AG ++EA   + S  ++ DVV WR LLSAC   +   LG+     + ++ 
Sbjct: 471 YTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMD 530

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
            GD   Y+LLSNMY   KRWD    +R++M+++ V+K  G SW+E+   IH F +  ++H
Sbjct: 531 PGDVGTYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSIHVFVSEGKTH 590

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE+  I + +  L+   +  G++P    V  DV +E+K   + +HSEKLA+AYG++KT  
Sbjct: 591 PESNQIYEKVQELLTMIRPMGYVPDIAAVFHDVEDEQKREYVSYHSEKLAIAYGLMKTPS 650

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCHS +K+IS++  R+IIVRD  RFH F  G CSC DYW
Sbjct: 651 GAPIRVIKNLRMCVDCHSAVKLISKVTNRMIIVRDANRFHCFGDGGCSCADYW 703



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 109/218 (50%), Gaps = 4/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  DV S+N +I G + N    EAL     M+   +  D  T+ +    C+ L  L   
Sbjct: 190 VPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLG 249

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +     E +  +S+A+IDMY KCG I  A++VF+ +Q  +V  W A+++  + +
Sbjct: 250 LQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQN 309

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS-IQPQLE 179
           G   +A   F +ME+  +LP+  TF  LL +C+  G+   G     H R + S  +  + 
Sbjct: 310 GCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCA--GISALGHGKLLHTRIKKSGFEDHII 367

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              A++++  ++G IE A+ +   M    D + W A++
Sbjct: 368 VGNALINMYSKSGSIEAAHKVFLEMICR-DSITWSAMI 404



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 113/231 (48%), Gaps = 25/231 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           M  ++VVSW +++ G+  N    E LR F+ M+S   + P+++ FA++I  C+  G +  
Sbjct: 88  MRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVE 147

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
            +  H   ++  +  +  +  ALI MYS+   ++ A  V+  V   DV  +N +I+G+  
Sbjct: 148 GWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLE 207

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACS-----------HCGLVEEGRKYFDHM 168
           +G  ++A  +  +M    ++ D++T++     CS           HC +   G +Y   +
Sbjct: 208 NGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFV 267

Query: 169 RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            S            A++D+ G+ G+I  A  +   +  + +VV W A+L+A
Sbjct: 268 SS------------AIIDMYGKCGNILNARKVFNRLQTK-NVVSWTAILAA 305



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 62/110 (56%), Gaps = 4/110 (3%)

Query: 53  RLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA 112
           + G + HA   H +I  +  + N +   +LI++Y+KC +I +A+ +FD +++ +V  W A
Sbjct: 42  KFGKMIHA---HLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRKRNVVSWGA 98

Query: 113 MISGVAIHGLAADASAIFTKMEMFNVL-PDSITFLGLLTACSHCGLVEEG 161
           +++G   +GL  +   +F  M   + + P+   F  ++++CS  G V EG
Sbjct: 99  LMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEG 148


>gi|326507562|dbj|BAK03174.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  338 bits (866), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 171/413 (41%), Positives = 243/413 (58%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++VVSW+++IGG+        AL  FR  L   V+ + FT + ++  CA        
Sbjct: 187 MPERNVVSWSALIGGYADAGMHPSALCIFRSALEEAVQVNDFTVSCIVRVCAAATLFELG 246

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   I+  ++ +  + ++L+ +YSKCG +  A  VF      ++ +WNA++   A H
Sbjct: 247 AQVHARSIKTALDASPFVGSSLVSLYSKCGLVDCAYRVFSAAPERNLGIWNAVLIASAQH 306

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  + A   FTKM+     P+ ITFL LLTACSH GLV+EG++YF  M+  Y I+P++EH
Sbjct: 307 GHTSTAFERFTKMQHAGFRPNFITFLCLLTACSHAGLVDEGKRYFSLMK-EYRIEPEVEH 365

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y AMVDLLGR G I EA  LI SM MEP   VW ALL ACR FK  +   +A   +    
Sbjct: 366 YAAMVDLLGRVGRITEALDLIESMPMEPPDSVWGALLMACRMFKDADTAAIAAKRLFETG 425

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G ++LLS+ Y    R   A   R+ M+  G+RK  G SWLE AG +H F +  R H
Sbjct: 426 SRSSGAHMLLSSTYAAAGRHVDAALARKAMRDAGIRKETGLSWLEAAGEVHTFVSNCRRH 485

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P +  I  +L  + ++    G++  T  V+ DV  +EK  +L +HSE+LA+A G+L    
Sbjct: 486 PRSNEIYNVLEKVGEKMAVAGYVADTSAVVKDVDRDEKCASLGYHSERLAIALGLLIVPE 545

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH+ +K +S+   RV+++RD  RFHRFE GLCSCGD+W
Sbjct: 546 GVPIRVMKNLRVCDDCHNAVKYLSKCTGRVVVLRDNRRFHRFEDGLCSCGDFW 598



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 99/220 (45%), Gaps = 12/220 (5%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVE------PDKFTFASVIYGCARLGALNHA 60
            +W+S+I  F +N     A   FR ML++ V       P      +     +R     HA
Sbjct: 88  AAWSSLISSFAQNGLPAAAFDAFRRMLAAGVPATDRSIPPAAKAVAAAADSSRPPLAPHA 147

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L  +     +  + +A++DMY+KCG +  A+ VFD +   +V  W+A+I G A  
Sbjct: 148 --LHGLASKTPFAGDVFVGSAVLDMYAKCGNLSDARRVFDEMPERNVVSWSALIGGYADA 205

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G+   A  IF       V  +  T   ++  C+   L E G +   H RS  +       
Sbjct: 206 GMHPSALCIFRSALEEAVQVNDFTVSCIVRVCAAATLFELGAQV--HARSIKTALDASPF 263

Query: 181 YG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            G ++V L  + G ++ AY + ++   E ++ +W A+L A
Sbjct: 264 VGSSLVSLYSKCGLVDCAYRVFSAAP-ERNLGIWNAVLIA 302


>gi|326528959|dbj|BAJ97501.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 514

 Score =  338 bits (866), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 170/415 (40%), Positives = 240/415 (57%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVVSW S++ G  R+   D AL+ +R+M+++ V PD+F  A+ +  CA   AL   
Sbjct: 100 MPRRDVVSWTSLLTGLARSRSHDSALQVYRDMVAAGVGPDEFAVAAALSSCAGATALELG 159

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT--VQRNDVSVWNAMISGVA 118
             VH   +   ++    +  +L+ MY+K G +  AK+VFD   V R D   W A+I G A
Sbjct: 160 RSVHAAAVRLALDPFLSVGNSLVSMYAKTGSLGEAKKVFDATRVDRCDPITWTALIVGYA 219

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            +G   ++  I+  M      PD +TF+GLL ACSH GLV+ GR +F  M++ + I P  
Sbjct: 220 QNGRGRESLEIYADMVRSGCRPDYVTFIGLLFACSHAGLVDAGRAHFRSMQAEHGIAPGA 279

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           +HY  MVDLLGRAG ++EA  L+   T   D  VW+ALL+ACRT +  EL E A   + R
Sbjct: 280 DHYACMVDLLGRAGRLDEAMDLLNRSTTRLDATVWKALLAACRTHRNAELAEHAAAMVWR 339

Query: 239 LMGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L   D   YV+LSN+Y    RW     VR  MK +G+ K  G SW+   GV H F   DR
Sbjct: 340 LDPTDAVPYVMLSNLYSRAGRWGDVARVRTSMKARGITKEPGCSWVAANGVTHLFYVEDR 399

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
            HP A  + + +  + +R + +G++  T   L D   E +E  L HHSE+LA+A+G+L  
Sbjct: 400 RHPRAAEVYRKVEEMTERIRGQGYVADTAWALQDEGPEGREKGLAHHSERLAVAFGLLAV 459

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             G  IR+ KNLR+C DCH+ IKM+++   R I++RD   FH  + G CSCGDYW
Sbjct: 460 PAGAPIRVFKNLRVCGDCHAAIKMVAQAYGREIVLRDSNCFHHMKDGACSCGDYW 514



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 97/213 (45%), Gaps = 6/213 (2%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           V++N+ I    R      AL    EM +     D++T    +   A L     A  +H+L
Sbjct: 7   VAYNAAISRCSRAGLHQRALALLHEMRARGHRADEYTLPPALNSAALLRLPADA--LHSL 64

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
           ++   +  +  ++ AL+D Y+K  +   A+ VFD + R DV  W ++++G+A       A
Sbjct: 65  LLRAGLAAHLHVANALVDAYAKLSRHGAARAVFDEMPRRDVVSWTSLLTGLARSRSHDSA 124

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLEHYGAMV 185
             ++  M    V PD       L++C+    +E GR    H  + R ++ P L    ++V
Sbjct: 125 LQVYRDMVAAGVGPDEFAVAAALSSCAGATALELGRSV--HAAAVRLALDPFLSVGNSLV 182

Query: 186 DLLGRAGHIEEAYGLITSMTMEP-DVVVWRALL 217
            +  + G + EA  +  +  ++  D + W AL+
Sbjct: 183 SMYAKTGSLGEAKKVFDATRVDRCDPITWTALI 215


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  337 bits (865), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 175/416 (42%), Positives = 255/416 (61%), Gaps = 8/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++DV+SWNSM+ G+ +N +  EAL  F EM  S  +P   T   ++  CA LG  +  
Sbjct: 120 MMERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLG 179

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV---QRNDVSVWNAMISGV 117
              H+ I++ ++E++  LS AL+DMY+KCG ++ A ++F+ +   +RN  S WN +ISG 
Sbjct: 180 RKFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGS-WNVLISGY 238

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
            +HG   +A  +F++M+   V P+  TF  +L+ACSH GL++EGRK F  M+ R S+  +
Sbjct: 239 GMHGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMK-RLSVTLE 297

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
            +H+  +VD+LGRAG ++EA+ LI  M   P   VW ALL AC+    +ELG+ A  N+ 
Sbjct: 298 DKHHACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLL 357

Query: 238 RL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294
           +L     G YVL+SN+Y    +W     +R+ MK KG++K    S +E    I  F   D
Sbjct: 358 QLEPNHTGYYVLMSNIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIEYGKDILGFHTAD 417

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
           + +P    + K + SL    K  G++P     L DV EE+KE  L +HSEKLA+A+G+LK
Sbjct: 418 QENPYRHEVYKKMESLAIEMKMAGYVPDLSCALHDVEEEDKERMLNYHSEKLAVAFGVLK 477

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             PG  IR++KNLR+C+DCHS  K IS + +R IIVRD  RFH F+GG CSC DYW
Sbjct: 478 IDPGMVIRVTKNLRVCNDCHSAFKYISHIYQRKIIVRDANRFHHFQGGTCSCKDYW 533



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 114/222 (51%), Gaps = 5/222 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           M  KD+V W +MI  + +  + +EAL  F++M   + +  D     SV     +LG + +
Sbjct: 18  MSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSIAVVSVASAVGQLGDVKN 77

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
           A+ VH     K +     +  +++ M++KCG  + A+ VFD +   DV  WN+M+SG   
Sbjct: 78  AHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMMERDVISWNSMLSGYTQ 137

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQL 178
           +G A +A  +F +M   +  P  +T L +++AC++ G    GRK+ D +  SR  I   L
Sbjct: 138 NGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSRMEIDTNL 197

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDVVVWRALLSA 219
            +  A++D+  + G +E+A  L   +   E +   W  L+S 
Sbjct: 198 SN--ALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISG 237



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 3/136 (2%)

Query: 85  MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFN-VLPDSI 143
           MY+KCG     +++FD +   D+  W AMI+         +A  +F KM+    +L DSI
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60

Query: 144 TFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
             + + +A    G V+       +   R S+  +L    +++ +  + G+ E+A  L+  
Sbjct: 61  AVVSVASAVGQLGDVKNAHTVHGYA-FRKSLIEELCVGNSILAMHTKCGNTEKAR-LVFD 118

Query: 204 MTMEPDVVVWRALLSA 219
           M ME DV+ W ++LS 
Sbjct: 119 MMMERDVISWNSMLSG 134


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  337 bits (865), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 167/413 (40%), Positives = 249/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M DK+ V WN+M+ G+ +N   +EAL  FR+MLS  +EPD+   AS++  C++L AL   
Sbjct: 578 MGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLG 637

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   ++  +  +  ++ +L+DMY+K G +  ++ +F+ +   +V+ WN MI+G  +H
Sbjct: 638 KEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVH 697

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F  M+  +  PD  TFLG+L AC H GLV EG  Y   M++ Y ++P+LEH
Sbjct: 698 GQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEH 757

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV---AIVNIS 237
           Y  ++D+LGRAG + EA   I  M  EPD  +W +LLS+  T+  LE+GE     ++ + 
Sbjct: 758 YACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALE 817

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 Y+LLSN+Y    +WD    VR+ MK   ++K  G SW+EL G ++ F AG+ S+
Sbjct: 818 ANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSN 877

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P +  I K+   L ++    G+ P    VL ++ E EK   L  HSEK+A+ +G L T  
Sbjct: 878 PSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEKRKILKGHSEKVAICFGFLNTKE 937

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT +RISKNLRIC DCH+  K IS+  +R I++RD  RFH F+ G+CSCGDYW
Sbjct: 938 GTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFKKGICSCGDYW 990



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 114/220 (51%), Gaps = 5/220 (2%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAY 61
           +K++  WN+++ G+VRN  +DEA+  F E++S ++ +PD FTF  +I  C     ++   
Sbjct: 171 NKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGK 230

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            VH + ++  + ++  +  A+I +Y KCG +  A E+FD +   ++  WN++I G + +G
Sbjct: 231 SVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENG 290

Query: 122 LAADASAIFTKM--EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
              +A   F  +      ++PD  T + LL  CS  G V+ G      M  +  +  +L 
Sbjct: 291 FWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGM-VIHGMAVKLGLVHELM 349

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A++D+  + G + EA  L   +     VV W +++ A
Sbjct: 350 VCNALIDMYSKCGCLSEAAILFRKIE-NKSVVSWNSMIGA 388



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 86/163 (52%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K V SWN++IGG  +N    +AL F+ EM    + PD F+  S++  C RLG L + 
Sbjct: 477 MNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYG 536

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  ++   +E+N  ++ +L+ +Y  C K    +  F+ +   +   WNAM+SG + +
Sbjct: 537 KEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQN 596

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
            L  +A ++F +M    + PD I    +L ACS    +  G++
Sbjct: 597 ELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKE 639



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 122/297 (41%), Gaps = 47/297 (15%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK--VEPDKFTFASVIYGCARLGALN 58
           + +K VVSWNSMIG + R     E     R+M   +  +E ++ T  +++  C     L 
Sbjct: 374 IENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELL 433

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H   +    +   +++ A I  Y+KCG +  A+ VF  +    VS WNA+I G A
Sbjct: 434 SLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHA 493

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVE------------------- 159
            +G    A   + +M    +LPD  + + LL AC   GL++                   
Sbjct: 494 QNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSF 553

Query: 160 ----------------EGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
                            GR YF+ M  + S+      + AM+    +     EA  L   
Sbjct: 554 VAVSLLSLYFHCSKPFYGRTYFERMGDKNSV-----CWNAMLSGYSQNELPNEALSLFRQ 608

Query: 204 MT---MEPDVVVWRALLSACRTFKRLELG-EVAIVNI-SRLMGGDYVLLSNMYCYLK 255
           M    +EPD +   ++L AC     L LG EV    + + LM  ++V  S M  Y K
Sbjct: 609 MLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAK 665



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 4/156 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK--VEPDKFTFASVIYGCARLGALN 58
           MP+++++SWNS+I GF  N  + EA R FR +L S   + PD  T  +++  C+  G ++
Sbjct: 271 MPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVD 330

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H + ++  +    ++  ALIDMYSKCG +  A  +F  ++   V  WN+MI   +
Sbjct: 331 VGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYS 390

Query: 119 IHGLAADASAIFTKMEMFNVL--PDSITFLGLLTAC 152
             G   +   +  KM M   L   + +T L LL AC
Sbjct: 391 REGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 93/189 (49%), Gaps = 18/189 (9%)

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
           L +  +   +F+L+  LI MYS CG    ++ VFD +   ++  WNA++SG   + L  +
Sbjct: 133 LCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDE 192

Query: 126 ASAIFTKMEMFNVL---PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             AI T +E+ +V    PD+ TF  L+ AC+    +  G K    M  +  +   L    
Sbjct: 193 --AIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLG-KSVHGMAVKMGLIMDLFVGN 249

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRAL----------LSACRTFKR-LELGEV 231
           AM+ L G+ G ++EA  L   M  E +++ W +L          L A R F+  LE G+ 
Sbjct: 250 AMIALYGKCGFLDEAVELFDKMP-EQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDG 308

Query: 232 AIVNISRLM 240
            I +++ ++
Sbjct: 309 LIPDVATMV 317


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  337 bits (865), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 171/409 (41%), Positives = 246/409 (60%), Gaps = 16/409 (3%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P +DVVSWNSMI  FV+    +EAL  F+EM +  V+P+  T   V+  CA+        
Sbjct: 198 PRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGR 257

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMI------- 114
           WVH+ I   +I  +  LS A++DMY+KCG ++ AK +FD +   D+  W  M+       
Sbjct: 258 WVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIG 317

Query: 115 -----SGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169
                 G+A+HG   DA A+F+KM+   V P+++TF  +L ACSH GLVEEGR +F+ M 
Sbjct: 318 EYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQME 377

Query: 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG 229
             Y + P ++HY  MVD+LGRAG +EEA  LI  M M P   VW ALL AC   + + L 
Sbjct: 378 LVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLA 437

Query: 230 EVAIVNISRLMGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGV 286
           E A   +  L  G+   YVLLSN+Y    +WD    +R++M+  G++K  G S +E+ G+
Sbjct: 438 EQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGI 497

Query: 287 IHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEE-KEGNLYHHSEK 345
           +H+F  GD SHP A+ I   L  ++ R ++ G++P    +L  V EE+ KE  L+ HSEK
Sbjct: 498 VHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEK 557

Query: 346 LALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRI 394
           LA+A+G++ T     IRI KNLR+C DCHS  K++S+L  R I++RDR+
Sbjct: 558 LAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRV 606



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 111/218 (50%), Gaps = 3/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE-PDKFTFASVIYGCARLGALNH 59
           +P  ++ +WN++I  +  ++   ++L  F  ML    + PDKFTF  +I   + L  L  
Sbjct: 95  IPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFT 154

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
               H ++I+  +  +  +  +LI  Y+KCG++ +   VF    R DV  WN+MI+    
Sbjct: 155 GKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQ 214

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            G   +A  +F +ME  NV P+ IT +G+L+AC+     E GR    ++  R  I   L 
Sbjct: 215 GGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIE-RNRIXESLT 273

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              AM+D+  + G +E+A  L   M  E D+V W  +L
Sbjct: 274 LSNAMLDMYTKCGSVEDAKRLFDKMP-EKDIVSWTTML 310



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 27/159 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFD------------EALRFFREMLSSKVEPDKFTFASVI 48
           MP+KD+VSW +M+ G+ +   +D            +A+  F +M   KV+P+  TF +++
Sbjct: 298 MPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNIL 357

Query: 49  YGCARLGALNHAYWVHNLIIEKKIELNF-ILS-----AALIDMYSKCGKIQMAKEVFDTV 102
             C+ +G +       N     ++EL + +L      A ++D+  + G ++ A E+ + +
Sbjct: 358 CACSHVGLVEEGRTFFN-----QMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKM 412

Query: 103 QRND-VSVWNAMISGVAIHG---LAADASAIFTKMEMFN 137
                 SVW A++    IH    LA  A +   ++E  N
Sbjct: 413 PMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGN 451


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  337 bits (865), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 167/414 (40%), Positives = 254/414 (61%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLGALNH 59
           M +K V SW+S+IG       + E L    +M    +   ++    S +  C  LG+ N 
Sbjct: 192 MDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNL 251

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H +++    ELN ++  +LIDMY KCG ++    VF  +   +   +  MI+G+AI
Sbjct: 252 GRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAI 311

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +A  +F+ M    + PD + ++G+L+ACSH GLV EG + F+ M+  + I+P ++
Sbjct: 312 HGRGREAVRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQ 371

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HYG MVDL+GRAG ++EAY LI SM ++P+ VVWR+LLSAC+    LE+GE+A  NI RL
Sbjct: 372 HYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRL 431

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                GDY++L+NMY   K+W     +R  M +K + ++ G S +E    +++F + D+S
Sbjct: 432 NKHNPGDYLVLANMYARAKKWANVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKS 491

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
            P  + I  ++  +  + K EG+ P    VL+DV E+EK   L HHS+KLA+A+ +++TS
Sbjct: 492 QPICETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTS 551

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G+ IRIS+NLR+C+DCH++ K IS +  R I VRDR RFH F+ G CSC DYW
Sbjct: 552 EGSPIRISRNLRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 605



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 112/254 (44%), Gaps = 50/254 (19%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           +N+MI G V +   +EAL  + EML   +EPD FT+  V+  C+ L AL     +H  + 
Sbjct: 99  YNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVF 158

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
           +  +E++  +   LI MY KCG I+ A  VF+ +    V+ W+++I   A   +  +   
Sbjct: 159 KAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLM 218

Query: 129 IFTKM--EMFNVLPDSITFLGLLTACSH-------------------------------- 154
           +   M  E  +   +SI  +  L+AC+H                                
Sbjct: 219 LLGDMSGEGRHRAEESI-LVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDM 277

Query: 155 ---CGLVEEGRKYFDHM--RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME-- 207
              CG +E+G   F +M  ++RYS       Y  M+  L   G   EA  + + M  E  
Sbjct: 278 YVKCGSLEKGLCVFQNMAHKNRYS-------YTVMIAGLAIHGRGREAVRVFSDMLEEGL 330

Query: 208 -PDVVVWRALLSAC 220
            PD VV+  +LSAC
Sbjct: 331 TPDDVVYVGVLSAC 344



 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 6/145 (4%)

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           N + S AL    S+ G ++ A  +F  ++      +N MI G        +A  ++ +M 
Sbjct: 68  NLVASCAL----SRWGSMEYACSIFSQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEML 123

Query: 135 MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194
              + PD+ T+  +L ACS    ++EG +   H+  +  ++  +     ++ + G+ G I
Sbjct: 124 ERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHV-FKAGLEVDVFVQNGLISMYGKCGAI 182

Query: 195 EEAYGLITSMTMEPDVVVWRALLSA 219
           E A G++     E  V  W +++ A
Sbjct: 183 EHA-GVVFEQMDEKSVASWSSIIGA 206


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  337 bits (864), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 168/415 (40%), Positives = 252/415 (60%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFR--EMLSSKVEPDKFTFASVIYGCARLGALN 58
           +P+KDV+SWN++I G+ +N    EA+  +   E    ++  ++ T+ SV+  C++ GAL 
Sbjct: 410 LPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALR 469

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H  +++  + L+  +  +L DMY KCG++  A  +F  + R +   WN +I+   
Sbjct: 470 QGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHG 529

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            HG    A  +F +M    V PD ITF+ LL+ACSH GLV+EG   F+ M++ Y I P L
Sbjct: 530 FHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSL 589

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVN 235
           +HYG MVDL GRAG +E A   I SM ++PD  +W ALLSACR    ++LG++A   +  
Sbjct: 590 KHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFE 649

Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           +     G +VLLSNMY    +W+  + +R I   KG+RK+ G S +E+   +  F  G++
Sbjct: 650 VEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQ 709

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           +HP  + + + L +L ++ K  G++P    VL DV ++EKE  L  HSE+LA+A+ ++ T
Sbjct: 710 THPMYEEMYRELTALHEKLKMVGYVPDHRFVLQDVEDDEKEHILMSHSERLAMAFALITT 769

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              T IRI KNLR+C DCHS  K IS++  R IIVRD  RFH F+ G+CSCGDYW
Sbjct: 770 PAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 824



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 109/218 (50%), Gaps = 10/218 (4%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFRE-MLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           ++DV +WN MI G+ R     E +R F   MLSS ++PD  TF SV+  C  +   N   
Sbjct: 114 NRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTDGNK-- 171

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H L ++     +  ++A+LI +Y + G +  A+ +FD +   D+  WNAMISG    G
Sbjct: 172 -IHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSG 230

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
            A +A  +   +       DS+T + LL+AC+  G    G     +   ++ ++ +L   
Sbjct: 231 NAKEALTLSDGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSY-SIKHGLESELFVS 285

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             ++DL    G +++   +   M +  D++ W +++ A
Sbjct: 286 NKLIDLYAEFGSLKDCQKVFDRMYVR-DLISWNSIIKA 322



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 113/223 (50%), Gaps = 6/223 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D++SWNS+I  +  N +   A+  F+EM  S+++PD  T  S+    ++LG +     V
Sbjct: 311 RDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSV 370

Query: 64  HNLIIEKKIEL-NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
               + K   L +  +  A++ MY+K G +  A+ VF+ +   DV  WN +ISG A +G 
Sbjct: 371 QGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGF 430

Query: 123 AADASAIFTKMEM--FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           A++A  ++  ME     +  +  T++ +L ACS  G + +G K    +  +  +   +  
Sbjct: 431 ASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLL-KNGLYLDVFV 489

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTF 223
             ++ D+ G+ G +++A  L   +    + V W  L+ AC  F
Sbjct: 490 GTSLADMYGKCGRLDDALSLFYQIP-RVNSVPWNTLI-ACHGF 530



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 100/222 (45%), Gaps = 11/222 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRF---FREMLSSKVEPDKFTFASVIYGCARLGAL 57
           MP +D+ SWN+MI G+ ++    EAL      R M       D  T  S++  C   G  
Sbjct: 211 MPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAM-------DSVTVVSLLSACTEAGDF 263

Query: 58  NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
           N    +H+  I+  +E    +S  LID+Y++ G ++  ++VFD +   D+  WN++I   
Sbjct: 264 NRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAY 323

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
            ++     A  +F +M +  + PD +T + L +  S  G +   R        +      
Sbjct: 324 ELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLED 383

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +    A+V +  + G ++ A  +   +    DV+ W  ++S 
Sbjct: 384 ITIGNAVVVMYAKLGLVDSARAVFNWLP-NKDVISWNTIISG 424



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 79/188 (42%), Gaps = 40/188 (21%)

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
           L++   I+ N  +SA L+++Y   G + +A+  FD +   DV  WN MISG    G +++
Sbjct: 77  LVVSNAIQ-NVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSE 135

Query: 126 ASAIFTKMEMFNVL-PDSITFLGLLTACS--------HC--------------------- 155
               F+   + + L PD  TF  +L AC         HC                     
Sbjct: 136 VIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTDGNKIHCLALKFGFMWDVYVAASLIHLY 195

Query: 156 ---GLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
              G V   R  FD M +R      +  + AM+    ++G+ +EA  L   +     V V
Sbjct: 196 CRYGAVVNARILFDEMPTR-----DMGSWNAMISGYCQSGNAKEALTLSDGLRAMDSVTV 250

Query: 213 WRALLSAC 220
             +LLSAC
Sbjct: 251 -VSLLSAC 257


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  337 bits (864), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 176/413 (42%), Positives = 250/413 (60%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           MP+K++VSWN++I   V+   ++EA+  F  M S + V  D  T  S+   C  LGAL+ 
Sbjct: 428 MPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDL 487

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
           A W++  I + +I+L+  L   L+DM+S+CG  + A  +F+++   DVS W A I  +A+
Sbjct: 488 AKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAM 547

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            G    A  +F +M    + PD + F+G LTAC H GLV++G++ F+ M   + + P+  
Sbjct: 548 AGNVERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDV 607

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HYG MVDLLGRAG +EEA  LI  M  EP+ V+W +LL+ACR    +E+   A   I  L
Sbjct: 608 HYGCMVDLLGRAGLLEEALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVL 667

Query: 240 M---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVLLSN+Y    RW+    VR  MK+KG+RK  G S +++ G  H+F +GD S
Sbjct: 668 APERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSVIQIRGKTHEFTSGDES 727

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HPE + I+ +L  L QR    G +P    VLMDV E+EK   L  HSEKLA+A+G++ ++
Sbjct: 728 HPEMRKIEAMLDELSQRASDLGHVPDLSNVLMDVDEQEKIFMLSRHSEKLAMAFGLISSN 787

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDY 409
            GT IRI KNLR+C  CHS+ K  S++  R II+RD  RFH    G CSC D+
Sbjct: 788 KGTTIRIVKNLRVCSYCHSFAKFASKVYNREIILRDNNRFHFIRQGKCSCSDF 840



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 141/302 (46%), Gaps = 38/302 (12%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           +NS+I G+  +    EA+  F  M++S + PDK+TF   +  CA+     +   +H LII
Sbjct: 101 YNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLII 160

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
           +     +  +  +L+  Y++CG++  A++VFD +   +V  W +MI G A    A DA  
Sbjct: 161 KMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVD 220

Query: 129 IFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR------------------ 169
           +F +M    +V+P+S+T + +++AC+    +E G K +D +R                  
Sbjct: 221 LFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMY 280

Query: 170 ---SRYSIQPQL-EHYGAM-VDLLG-------RAGHIEEAYGLITSMT---MEPDVVVWR 214
              +   I  +L + YGA  +DL         R G  +EA G++  M    + PD +   
Sbjct: 281 MKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISML 340

Query: 215 ALLSACRTFKRLELGEVAIVNISR--LMGGDYVL--LSNMYCYLKRWDTAENVREIMKKK 270
           + +S+C   + +  G+     + R      D +   L +MY    R DTA  + + M  K
Sbjct: 341 SAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNK 400

Query: 271 GV 272
            V
Sbjct: 401 TV 402



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 116/232 (50%), Gaps = 8/232 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALR-FFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           M +++VVSW SMI G+ R     +A+  FFR +    V P+  T   VI  CA+L  L  
Sbjct: 194 MSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLET 253

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              V++ I +  IE+N ++ +AL+DMY KC  I +AK +FD    +++ + NAM S    
Sbjct: 254 GEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVR 313

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            GL  +A  +   M    + PD I+ L  +++CS    +  G+    ++  R   +    
Sbjct: 314 QGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVL-RNGFESWDN 372

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV 231
              A++D+  +    + A+ +   M+ +  VV W ++++       +E GEV
Sbjct: 373 ICNALIDMYMKCHRQDTAFRIFDRMSNKT-VVTWNSIVAG-----YIENGEV 418



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 97/238 (40%), Gaps = 38/238 (15%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIE 69
           N+M   +VR     EAL     M+ S + PD+ +  S I  C++L  +      H  ++ 
Sbjct: 305 NAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLR 364

Query: 70  KKIELNFILSAALIDMYSKC-------------------------------GKIQMAKEV 98
              E    +  ALIDMY KC                               G++  A E 
Sbjct: 365 NGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWET 424

Query: 99  FDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM---EMFNVLPDSITFLGLLTACSHC 155
           F+T+   ++  WN +IS +    +  +A  +F  M   E  NV  D +T + + +AC H 
Sbjct: 425 FNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNV--DGVTMMSIASACGHL 482

Query: 156 GLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVW 213
           G ++   K+  +   +  IQ  +     +VD+  R G  E A  +  S+T   DV  W
Sbjct: 483 GALDLA-KWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLT-NRDVSAW 538


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  337 bits (864), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 171/411 (41%), Positives = 249/411 (60%), Gaps = 4/411 (0%)

Query: 3    DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
            +K +V+WNSMI GF +N    EA+  F +M  + V+ DK TF SVI  C+ LG L    W
Sbjct: 663  EKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKW 722

Query: 63   VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            VH+ +I   +  +  L  AL DMYSKCG++QMA  VFD +    +  W+ MI+G  +HG 
Sbjct: 723  VHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQ 782

Query: 123  AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
                 ++F +M    + P+ ITF+ +L+ACSH G VEEG+ YF+ M S + ++P+ +H+ 
Sbjct: 783  INATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSM-SEFGVEPKHDHFA 841

Query: 183  AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG---EVAIVNISRL 239
             MVDLL RAG +  AY +ITS+    +  +W ALL+ CR  KR+++    E  ++++   
Sbjct: 842  CMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTA 901

Query: 240  MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
              G Y LLSN+Y     WD    VR +MK KG+RK  G S +E+   I++F  GD SH +
Sbjct: 902  DTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQ 961

Query: 300  AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
             + I + L +      ++ +    +  ++  S+  KE N+  HSEKLA+A+GI+ T PGT
Sbjct: 962  TKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSEKLAIAFGIINTRPGT 1021

Query: 360  EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             +RISKNLR+C DCHS+ K+ S++  R II+RD  RFH F  G CSC DYW
Sbjct: 1022 TLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 1072



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 119/217 (54%), Gaps = 3/217 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K ++SWN++I  F RN + +EAL  F +M +  + PD ++ AS +  C  +        
Sbjct: 563 EKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQ 622

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  II K    N  +  ALIDMY+KCG +  A ++F+ ++   +  WN+MI G + +G 
Sbjct: 623 IHGYII-KTGNFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGY 681

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           + +A  +F +M M  V  D +TFL ++ ACSH G +E+G K+  H    Y ++       
Sbjct: 682 SVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKG-KWVHHKLIMYGLRKDSYLDT 740

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A+ D+  + G ++ A+G+   M+ E  +V W  +++ 
Sbjct: 741 ALTDMYSKCGELQMAHGVFDRMS-ERSIVSWSVMIAG 776



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 106/215 (49%), Gaps = 16/215 (7%)

Query: 13  IGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGAL--------NHAYWVH 64
           +GG  +N +  E L  F +M+S  VEPD  T  SV   C+ LG+L             VH
Sbjct: 465 VGG--KNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVH 522

Query: 65  NLIIEKKI--ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
             +I + +  EL+F L  AL+++Y+  G ++   +VF+T++   +  WN +IS    +G 
Sbjct: 523 GFVIRRAMDPELDF-LGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQ 581

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F +M+   ++PDS +    L+AC      + G +   ++    +    +++  
Sbjct: 582 PEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQN-- 639

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           A++D+  + G +  A  +   +  E  +V W +++
Sbjct: 640 ALIDMYAKCGFVHSANKMFEKIK-EKSLVTWNSMI 673



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 1/121 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++ +VSW+ MI G+  + + +  +  F +ML S ++P+  TF  ++  C+  GA+   
Sbjct: 762 MSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEG 821

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
               N + E  +E      A ++D+ S+ G +  A ++  ++    + S+W A+++G  I
Sbjct: 822 KLYFNSMSEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRI 881

Query: 120 H 120
           H
Sbjct: 882 H 882



 Score = 45.4 bits (106), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 25/165 (15%)

Query: 79  SAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNV 138
           S  LI+ Y++ G  + +K VFDT  + D  +W  +I      G   +A +++ +M   + 
Sbjct: 383 STKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQ 442

Query: 139 LP-DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEA 197
               +  F  +L ACS  G +  G K                         G+A    + 
Sbjct: 443 TQISNFVFPSVLKACSGFGDLSVGGKN------------------------GQASEGLDM 478

Query: 198 YGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
           +  + S  +EPD V   ++  AC     L LG +  V   R + G
Sbjct: 479 FSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHG 523


>gi|23617093|dbj|BAC20776.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
          Length = 681

 Score =  337 bits (864), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 165/397 (41%), Positives = 243/397 (61%), Gaps = 3/397 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D +SW++++GG+V+    + AL  FR M+   V P++    + +   ARLG L H 
Sbjct: 239 MPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHG 298

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            +VHN++    + +   + AAL+DMY+KCG + +A+EVFD ++R DV  WNAMI G+A H
Sbjct: 299 KFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAH 358

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  DA  +F +     + P ++TF+G+L  CS  GLV EGR+YF  +  +Y I+P++EH
Sbjct: 359 GLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEH 418

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDLLGRAG + EA  LI  M + PD V+W  +LS+C+T   ++LG      ++ + 
Sbjct: 419 YGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELD 478

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLS +Y    +WD    VR++M  +G  KS G S +E  G +H+F  GD  H
Sbjct: 479 PTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEAHGKVHKFLVGDTYH 538

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            ++  I   L  + +R    G++P    VL D+ EEEK   +  HSE+LA+AYG +    
Sbjct: 539 KDSVQIYDTLDMINKRLTEAGYVPDVSSVLHDIGEEEKVHAVKVHSERLAIAYGFIVLEA 598

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRI 394
           G+ IRI KNLR+C DCH + KM++ + +R IIVRD I
Sbjct: 599 GSPIRIVKNLRVCGDCHEFSKMVTMVFQREIIVRDGI 635



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 4/133 (3%)

Query: 86  YSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145
           Y + G + +A+EVFD +   D   W+ ++ G         A  +F  M    V P+    
Sbjct: 223 YVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAV 282

Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG-AMVDLLGRAGHIEEAYGLITSM 204
           +  L+A +  GL+E G+  F H   + S  P   + G A+VD+  + G +  A  +   M
Sbjct: 283 VTALSAAARLGLLEHGK--FVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGM 340

Query: 205 TMEPDVVVWRALL 217
               DV  W A++
Sbjct: 341 RRR-DVFAWNAMI 352


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  337 bits (863), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 168/413 (40%), Positives = 246/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K+V+SW +M+ G+ +N   +EA+R F +M  +++ PD FT  SVI  CA L +L   
Sbjct: 331 MRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEG 390

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H   +   +     +S ALI +Y KCG ++ A ++F  ++  D   W A++SG A  
Sbjct: 391 AQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQF 450

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +  ++F  M    ++PD +TF+G+L+ACS  GLVE+G  YF+ M   + I P  +H
Sbjct: 451 GKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDH 510

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  M+DLL RAG +EEA   I  M   PD + W  LLS+CR    LE+G+ A  ++ +L 
Sbjct: 511 YTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLE 570

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 Y+LLS++Y    +WD    +R+ M++ GV+K  G SW++    +H F A DRS 
Sbjct: 571 PQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSADDRSS 630

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P +  I   L SL  +   EG++P    VL DV + EK   L HHSEKLA+A+G+L    
Sbjct: 631 PFSDQIYAKLESLYLKMIEEGYVPDMSFVLHDVEKSEKIKMLNHHSEKLAIAFGLLFIPD 690

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G +IR+ KNLR+C DCH+  K ISR+ +R I+VRD +RFH F+ G+CSCGD+W
Sbjct: 691 GLQIRVVKNLRVCGDCHNATKYISRITQREILVRDAVRFHLFKDGVCSCGDFW 743



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 117/225 (52%), Gaps = 2/225 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KD +SW ++I G  +N  F EA+  F+EM       D+FTF SV+  C    AL+  
Sbjct: 230 MPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEG 289

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  II    + N  + +AL+DMY KC  ++ A+ VF  ++  +V  W AM+ G   +
Sbjct: 290 KQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQN 349

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G + +A  IF  M+   + PD  T   ++++C++   +EEG ++     +   +   +  
Sbjct: 350 GYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALAS-GLICFVTV 408

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKR 225
             A++ L G+ G +E A+ L   M +  D V W AL+S    F +
Sbjct: 409 SNALITLYGKCGSLEHAHQLFHEMKIR-DEVSWTALVSGYAQFGK 452



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 109/234 (46%), Gaps = 12/234 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           MP+ DVVSWNS++ G+  N    E++R +  ML    V  ++ TF++++   +  G ++ 
Sbjct: 97  MPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDL 156

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  I +   +    + + L+DMY+K G I  A  +F+ +   ++ V+N MI+G+  
Sbjct: 157 GRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLR 216

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
                +A  +F  M       DSI++  ++T  +  GL +E    F  M        Q  
Sbjct: 217 CRFIVEAEQLFDNMPE----KDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFT 272

Query: 180 HYGAMVDLLGRAGHIEEA---YGLITSMTMEPDVVVWRALLS---ACRTFKRLE 227
            +G+++   G    ++E    +  I     + ++ V  ALL     CR  K  E
Sbjct: 273 -FGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAE 325



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 102/195 (52%), Gaps = 12/195 (6%)

Query: 32  MLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKI-ELNFILSAALIDMYSKCG 90
           ++ +   P+ F + ++I    +LG L +A  V + I +  +   N +LSA     YSK G
Sbjct: 31  IIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSA-----YSKLG 85

Query: 91  KIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM-EMFNVLPDSITFLGLL 149
            +Q  + VFD++  +DV  WN+++SG A +GL +++  ++  M +  +V  + ITF  +L
Sbjct: 86  YLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTML 145

Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
              S+ G V+ GR+    +  ++  Q  L     +VD+  + G I +A  +   +  E +
Sbjct: 146 ILSSNRGFVDLGRQIHGQI-FKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIP-EKN 203

Query: 210 VVVWRALLSA---CR 221
           +VV+  +++    CR
Sbjct: 204 IVVYNTMITGLLRCR 218


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  337 bits (863), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 171/411 (41%), Positives = 249/411 (60%), Gaps = 4/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K +V+WNSMI GF +N    EA+  F +M  + V+ DK TF SVI  C+ LG L    W
Sbjct: 466 EKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKW 525

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH+ +I   +  +  L  AL DMYSKCG++QMA  VFD +    +  W+ MI+G  +HG 
Sbjct: 526 VHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQ 585

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
                ++F +M    + P+ ITF+ +L+ACSH G VEEG+ YF+ M S + ++P+ +H+ 
Sbjct: 586 INATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSM-SEFGVEPKHDHFA 644

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG---EVAIVNISRL 239
            MVDLL RAG +  AY +ITS+    +  +W ALL+ CR  KR+++    E  ++++   
Sbjct: 645 CMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTA 704

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             G Y LLSN+Y     WD    VR +MK KG+RK  G S +E+   I++F  GD SH +
Sbjct: 705 DTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQ 764

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
            + I + L +      ++ +    +  ++  S+  KE N+  HSEKLA+A+GI+ T PGT
Sbjct: 765 TKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSEKLAIAFGIINTRPGT 824

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            +RISKNLR+C DCHS+ K+ S++  R II+RD  RFH F  G CSC DYW
Sbjct: 825 TLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 875



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 123/219 (56%), Gaps = 3/219 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVV+W+S++  FV+N +  E L  F +M+S  VEPD  T  SV   C+ LG+L   
Sbjct: 161 MPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLG 220

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++ ++IE N  L+ +LI MY K G +  A+ +F+ V     + W  MIS     
Sbjct: 221 RSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQS 280

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F KM+ F + P+ +T +G+L AC+  G V+EGR     +  R ++ P+L+ 
Sbjct: 281 GCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRR-AMDPELDF 339

Query: 181 YG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
            G A+++L    G++ + + +  ++  E  ++ W  L+S
Sbjct: 340 LGPALMELYADTGNLRDCHKVFETIK-EKTILSWNTLIS 377



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 119/217 (54%), Gaps = 3/217 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K ++SWN++I  F RN + +EAL  F +M +  + PD ++ AS +  C  +        
Sbjct: 366 EKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQ 425

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  II K    N  +  ALIDMY+KCG +  A ++F+ ++   +  WN+MI G + +G 
Sbjct: 426 IHGYII-KTGNFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGY 484

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           + +A  +F +M M  V  D +TFL ++ ACSH G +E+G K+  H    Y ++       
Sbjct: 485 SVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKG-KWVHHKLIMYGLRKDSYLDT 543

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A+ D+  + G ++ A+G+   M+ E  +V W  +++ 
Sbjct: 544 ALTDMYSKCGELQMAHGVFDRMS-ERSIVSWSVMIAG 579



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 111/219 (50%), Gaps = 6/219 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P +    W  MI  + ++  F EAL  F +M   K+EP++ T   V+  CARLG +   
Sbjct: 262 VPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEG 321

Query: 61  YWVHNLIIEKKI--ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
             VH  +I + +  EL+F L  AL+++Y+  G ++   +VF+T++   +  WN +IS   
Sbjct: 322 RSVHGFVIRRAMDPELDF-LGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFT 380

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            +G   +A  +F +M+   ++PDS +    L+AC      + G +   ++    +    +
Sbjct: 381 RNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFV 440

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           ++  A++D+  + G +  A  +   +  E  +V W +++
Sbjct: 441 QN--ALIDMYAKCGFVHSANKMFEKIK-EKSLVTWNSMI 476



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 114/262 (43%), Gaps = 34/262 (12%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNHA 60
           P  D   W  +I  +V    F+EA+  + EM+   + +   F F SV+  C+  G L+  
Sbjct: 60  PKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVG 119

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +I+   E + ++  +L+ MY +   +  A + FDT+   DV  W++++     +
Sbjct: 120 GKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQN 179

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR--------- 171
           G A++   +F++M    V PDS+T L +  ACS  G +  GR    ++  R         
Sbjct: 180 GQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLN 239

Query: 172 -------------YSIQPQLEH--------YGAMVDLLGRAGHIEEAYGLITSMT---ME 207
                        YS +   E+        +  M+    ++G  +EA  +   M    ME
Sbjct: 240 NSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKME 299

Query: 208 PDVVVWRALLSACRTFKRLELG 229
           P+ V    +L AC    R++ G
Sbjct: 300 PNQVTMVGVLCACARLGRVKEG 321



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 1/121 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++ +VSW+ MI G+  + + +  +  F +ML S ++P+  TF  ++  C+  GA+   
Sbjct: 565 MSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEG 624

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
               N + E  +E      A ++D+ S+ G +  A ++  ++    + S+W A+++G  I
Sbjct: 625 KLYFNSMSEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRI 684

Query: 120 H 120
           H
Sbjct: 685 H 685



 Score = 38.1 bits (87), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 5/141 (3%)

Query: 79  SAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNV 138
           S  LI+ Y++ G  + +K VFDT  + D  +W  +I      G   +A +++ +M   + 
Sbjct: 36  STKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQ 95

Query: 139 LPDS-ITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196
              S   F  +L ACS  G +  G K     ++  +     +E   +++ + G    +++
Sbjct: 96  TQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVE--TSLLCMYGEMSCLDD 153

Query: 197 AYGLITSMTMEPDVVVWRALL 217
           A     +M +  DVV W +++
Sbjct: 154 ACKAFDTMPIR-DVVAWSSIV 173


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 164/409 (40%), Positives = 251/409 (61%), Gaps = 3/409 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +VVSW S+I G  +N +  EAL  FREM  + V+P++ T  S++  C  + AL H    H
Sbjct: 352 NVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTH 411

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
              +   +  +  + +ALIDMY+KCG+I+M++ VF+ +   ++  WN++++G ++HG A 
Sbjct: 412 GFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAK 471

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           +  +IF  +    + PD I+F  LL+AC   GL +EG KYF+ M   Y I+P+LEHY  M
Sbjct: 472 EVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCM 531

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---MG 241
           V+LLGRAG ++EAY LI  +  EPD  VW ALL++CR    ++L E+A   +  L     
Sbjct: 532 VNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPENP 591

Query: 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
           G YVL+SN+Y     W   +++R  M+  G++K+ G SW+++   ++   A D+SHP+  
Sbjct: 592 GTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNKVYTLLACDKSHPQID 651

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
            I + +  + +  +  G  P  +  L DV E+E+E  L+ HSEKLA+ +G+L T  GT +
Sbjct: 652 QITEKMDEISEEMRKSGHRPNLDFALQDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPL 711

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           ++ KNLRIC DCH+ IK IS    R I +RD  RFH F+ G+CSCGD+W
Sbjct: 712 QVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 115/288 (39%), Gaps = 68/288 (23%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +PD  V S++S+I    +   F +++  F  M S  + PD     ++   CA L A    
Sbjct: 76  IPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAG 135

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H +     ++++  +  +L  MY +CG++  A++VFD +   DV   +A++ G A  
Sbjct: 136 KQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARK 195

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR---------SR 171
           G   +   I ++ME   + P+ +++ G+L+  +  G  +E    F  M          + 
Sbjct: 196 GCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTV 255

Query: 172 YSIQP------------QLEHY-------------GAMVDLLGRAGHIE----------- 195
            S+ P            Q+  Y              AM+D+ G++GH+            
Sbjct: 256 SSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEM 315

Query: 196 -----------------------EAYGLITSMTMEPDVVVWRALLSAC 220
                                  E +GL     ME +VV W ++++ C
Sbjct: 316 METGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGC 363



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 111/235 (47%), Gaps = 10/235 (4%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + ++VSWN ++ GF R+    EA+  F++M      PD+ T +SV+        LN    
Sbjct: 214 EPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQ 273

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  +I++ +  +  + +A++DMY K G +    ++FD  +  +  V NA I+G++ +GL
Sbjct: 274 IHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGL 333

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR------SRYSIQP 176
              A  +F   +   +  + +++  ++  C+  G   E  + F  M+      +R +I  
Sbjct: 334 VDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPS 393

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV 231
            L   G +  L    GH    +G    + +  DV V  AL+       R+++ ++
Sbjct: 394 MLPACGNIAAL----GHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQI 444



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 78/144 (54%), Gaps = 4/144 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP K++V WNS++ G+  + +  E +  F  ++ ++++PD  +F S++  C ++G  +  
Sbjct: 449 MPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEG 508

Query: 61  YWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
           +   N++ E+  I+      + ++++  + GK+Q A ++   +    D  VW A+++   
Sbjct: 509 WKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCR 568

Query: 119 IHGLAADASAIFTKMEMFNVLPDS 142
           +     D + I  + ++F++ P++
Sbjct: 569 LQN-NVDLAEIAAQ-KLFHLEPEN 590


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 168/413 (40%), Positives = 252/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K+V+SW++MI  F +N   DEAL FF+ M    +E D+ T+ SV+     +GAL   
Sbjct: 203 MPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELG 262

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I+   ++ + ++   L++MY KCG    A++VFD++   +V  WNAM++    +
Sbjct: 263 KALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQN 322

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G + +A A+F  M++  V P+ ITF+ +L  CSH G  ++   +F  MR  + I P+  H
Sbjct: 323 GRSREALALFDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVSHFVEMRQDFGITPREVH 382

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           +G ++D+LGR+G +EEA  LI +M +  D V+W +LL AC T K  +    A     +  
Sbjct: 383 FGCLIDMLGRSGKLEEAEELIQAMPVPADAVLWTSLLCACVTHKDEDRAARAAEEAFQRE 442

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 Y++LSN+Y  LK+WD A  VR+ M++ GVRK  G+SW+E+   +H+F AGD  H
Sbjct: 443 PRCAAAYIMLSNLYAALKKWDEAAKVRKRMEQAGVRKQAGRSWIEIDKQVHEFVAGDSIH 502

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+   I K L  L+   + +G+ P  ++V+  + EEEK+  L++HSEKLA+A+GI  T P
Sbjct: 503 PDKSRIFKTLQRLMSEMRIKGYEPDRKVVIHSMEEEEKDEVLFYHSEKLAVAFGIASTPP 562

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T + I KNLR+C DCHS IK IS +  R I VRD  RFH F+ G CSCGDYW
Sbjct: 563 RTPLCIVKNLRVCSDCHSAIKFISGVEGRRITVRDSNRFHHFDRGECSCGDYW 615



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K+V SW  ++ GFV++ R  EA++ F  M      PD+      I  C    AL+  
Sbjct: 102 MQHKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQG 161

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+      ++ + + + A+I+MY KCG I  A  VF  +   +V  W+ MI+    +
Sbjct: 162 REIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQN 221

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS-IQPQLE 179
            LA +A   F  M+   +  D IT++ +L A +  G +E G+    H+R  Y+ +   + 
Sbjct: 222 ELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKAL--HVRIVYAGLDTSIV 279

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               +V++ G+ G  ++A  +  SM +E +VV W A+L+A
Sbjct: 280 VGNTLVNMYGKCGSPDDARDVFDSM-VEKNVVSWNAMLAA 318



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 5/188 (2%)

Query: 47  VIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRND 106
           +I  CA   AL     +H  +    ++    LS  L+DMY KCG +  AK VFD +Q  +
Sbjct: 47  LIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHKN 106

Query: 107 VSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD 166
           V  W  +++G    G   +A  +F +M     LPD +  L  + +C     + +GR+   
Sbjct: 107 VFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGREIHS 166

Query: 167 HMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRL 226
              S   +   L    A++++ G+ G I EA+ + T M  E +V+ W  +++A   F + 
Sbjct: 167 AAAS-CGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMP-EKNVISWSTMIAA---FCQN 221

Query: 227 ELGEVAIV 234
           EL + A++
Sbjct: 222 ELADEALL 229


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 168/414 (40%), Positives = 250/414 (60%), Gaps = 8/414 (1%)

Query: 5   DVVSWNSMIGGFVRNARFD-EALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           D+V WN+MI G+ +N     EAL  FR+M  +   PD  +F   I  C+ L + +     
Sbjct: 307 DLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQF 366

Query: 64  HNLIIEKKIELNFI-LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           H L ++ +I  N I ++ AL+ MYSKCG +Q A+++F  + +++    N++I+G A HG+
Sbjct: 367 HALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGI 426

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             ++  +F +M   ++ P SIT + +L+AC+H G VEEG+KYF+ M+  + I+P+ EHY 
Sbjct: 427 GTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYS 486

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            M+DLLGRAG + EA  LI +M   P    W ALL ACR +  +EL E A     +L   
Sbjct: 487 CMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPT 546

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           +   Y++L++MY   ++W+ A  +R++M+ +G+RK  G SW+EL   +H F A D SHP 
Sbjct: 547 NAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPR 606

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLM---DVSEEEKEGNLYHHSEKLALAYGILKTS 356
            + I   L  +  + K  G++P      +   +  E+EKE  L HHSEKLA+A+G+L T 
Sbjct: 607 IKEIHMYLDEMFVKMKRAGYVPDVRWAFVKDDETGEQEKEIMLAHHSEKLAVAFGLLFTK 666

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  + + KNLRIC DCH+ IK +S + RR I VRD  RFH FE G CSCGDYW
Sbjct: 667 HGEPLLVVKNLRICGDCHNAIKFMSAIARRKITVRDAYRFHCFEDGRCSCGDYW 720



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 113/213 (53%), Gaps = 6/213 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D VSWNSMI  + ++ R  +AL  +R+M+    E D FT ASV+   + +  L+     
Sbjct: 204 RDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQF 263

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGK-IQMAKEVFDTVQRNDVSVWNAMISGVAIHG- 121
           H   I+     N  + + LIDMY+KCG  +  +++VF+ +  +D+ VWN MISG + +  
Sbjct: 264 HAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKE 323

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP--QLE 179
           L+ +A   F +M+     PD  +F+  ++ACS+     +G+++  H  +  S  P  Q+ 
Sbjct: 324 LSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQF--HALAMKSEIPSNQIS 381

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
              A+V +  + G++++A  L   M     V +
Sbjct: 382 VNNALVTMYSKCGNLQDARKLFQRMPQHNTVTL 414



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 5/145 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP  + V+ NS+I G+ ++    E+L  F +ML++ + P   T  S++  CA  G +   
Sbjct: 406 MPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEG 465

Query: 61  YWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS-VWNAMISGVA 118
               N++ +   IE      + +ID+  + GK+  A+ + DT+  +  S  W A++    
Sbjct: 466 KKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACR 525

Query: 119 IHG---LAADASAIFTKMEMFNVLP 140
            +G   LA  A+  F ++E  N +P
Sbjct: 526 KYGNMELAEKAANQFLQLEPTNAVP 550



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 101/235 (42%), Gaps = 15/235 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  D+VS+N++I  +        AL  F EM    +  D FTF+ VI  C      NH 
Sbjct: 100 IPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVITACC-----NHV 154

Query: 61  YWV---HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ---RNDVSVWNAMI 114
             +   H+L      +    +  +L+  YSK G ++ A+ VF+ +    R++VS WN+MI
Sbjct: 155 GLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVS-WNSMI 213

Query: 115 SGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI 174
                H     A A++  M       D  T   +LT  S    +  G ++  H ++  + 
Sbjct: 214 VAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQF--HAKAIKTG 271

Query: 175 QPQLEHYGA-MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLEL 228
             +  H G+ ++D+  + G        +       D+VVW  ++S     K L +
Sbjct: 272 FNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSV 326



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 17/179 (9%)

Query: 51  CARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVW 110
           C  L   +HA+        +  E N     ALI  Y+K   I +A  +FD + + D+  +
Sbjct: 56  CNLLTTAHHAF-------NQTHEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSF 108

Query: 111 NAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA-CSHCGLVEE--GRKYFDH 167
           N +I+  A  G    A ++F +M    ++ D  TF G++TA C+H GL+ +     +   
Sbjct: 109 NTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVITACCNHVGLIRQLHSLAFSSG 168

Query: 168 MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME-PDVVVWRALLSACRTFKR 225
             S  S++  L  Y        + G +EEA  +   M  E  D V W +++ A    KR
Sbjct: 169 FDSYVSVKNSLLTY------YSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKR 221


>gi|77554579|gb|ABA97375.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 794

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 171/420 (40%), Positives = 251/420 (59%), Gaps = 16/420 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM------LSSKVEPDKFTFASVIYGCARL 54
           M  +DV +WNS++ G  +    + AL  F  +      L S+ EP++ T  + +  CA++
Sbjct: 172 MTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSACAQI 231

Query: 55  GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV--WNA 112
           G L    +VH       ++ N  +  +LIDMYSKCG +  A +VF +++  D ++  +NA
Sbjct: 232 GLLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQTLVSYNA 291

Query: 113 MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY 172
            I   ++HG   DA  +F +M    + PD +T+L +L  C+H GLV++G + F+ MR   
Sbjct: 292 AIQAHSMHGHGGDALRLFDEMPT-RIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMR--- 347

Query: 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA 232
            + P ++HYG +VDLLGRAG + EAY  + SM    D+V+W+ LL A +    +EL E+A
Sbjct: 348 -VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELA 406

Query: 233 IVNISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQ 289
              ++ L   + GDYVLLSN+Y    RW     VR+ M+   VRK  G S+ E+ GV+H+
Sbjct: 407 ANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHK 466

Query: 290 FKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALA 349
           F  GD+ HP  Q I + L  ++ R    G+ P T  VL D+ EEEK+  L +HSEKLA+A
Sbjct: 467 FINGDKEHPRWQEIYRALEDIVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEKLAIA 526

Query: 350 YGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDY 409
           +G++ T PG  +R+ KNLRIC DCH   K+IS+   RVI++RDR RFHRFE G CSC DY
Sbjct: 527 FGLIATPPGETLRVIKNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRDY 586



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 88/180 (48%), Gaps = 7/180 (3%)

Query: 39  PDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEV 98
           PD  + +  +   AR    +    +H L++   +  +  L   L+D Y+KCG +  A++V
Sbjct: 109 PDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKV 168

Query: 99  FDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM-EMFNVL-----PDSITFLGLLTAC 152
           FD +   DV+ WN++++G+A       A A+F ++   F  L     P+ +T +  L+AC
Sbjct: 169 FDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSAC 228

Query: 153 SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
           +  GL+++G  Y      R+ +   +    +++D+  + G +  A  +  S+  E   +V
Sbjct: 229 AQIGLLKDG-MYVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQTLV 287


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 170/415 (40%), Positives = 251/415 (60%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P++DVVS  ++I G+ +    +EAL  FR +    ++ +  T+  V+   + L AL+  
Sbjct: 426 LPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLG 485

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VHN ++  +I    +L  +LIDMYSKCG +  ++ +FDT+    V  WNAM+ G + H
Sbjct: 486 KQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKH 545

Query: 121 GLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQL 178
           G   +   +FT M E   V PDS+T L +L+ CSH GL ++G   F+ M S +  ++P++
Sbjct: 546 GEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKM 605

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVN 235
           EHYG +VDLLGR+G +EEA+  I  M  EP   +W +LL ACR    +++GE A   ++ 
Sbjct: 606 EHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEFAGQQLLE 665

Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           I     G+YV+LSN+Y    RW+   ++R++M KK V K  G+S +EL  V+H F A DR
Sbjct: 666 IEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSSIELDQVLHTFHASDR 725

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SHP  + I   +  L    K  G++P    VL DV EE+KE  L  HSEKLAL++G++ +
Sbjct: 726 SHPRREEICMKVKELSTSFKEVGYVPDLSCVLHDVDEEQKEKILLGHSEKLALSFGLIAS 785

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
                IR+ KNLRIC DCH++ K IS++  R + +RD+ RFHR  GG CSC DYW
Sbjct: 786 PASVPIRVIKNLRICVDCHNFAKYISKVYGREVSLRDKNRFHRIVGGKCSCEDYW 840



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 121/238 (50%), Gaps = 23/238 (9%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFF---------------REMLSSK------VEP 39
           MP+++VVSW +MI  + +     +AL  F               +  LS+        EP
Sbjct: 304 MPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEP 363

Query: 40  DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF 99
           ++FTFA+V+  C           +H+LII+   E +  + ++L+DMY+K GKI  A+ VF
Sbjct: 364 NEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVF 423

Query: 100 DTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVE 159
           + +   DV    A+ISG A  GL  +A  +F +++   +  + +T+ G+LTA S    ++
Sbjct: 424 ECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALD 483

Query: 160 EGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
            G++  +H+  R  I   +    +++D+  + G++  +  +  +M  E  V+ W A+L
Sbjct: 484 LGKQVHNHVL-RSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTM-YERTVISWNAML 539



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 26/220 (11%)

Query: 43  TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV 102
            + +++  C    A      VH  +I+ +   +  L   LI +Y+KC  +  A  VFD +
Sbjct: 245 NYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEM 304

Query: 103 QRNDVSVWNAMISGVAIHGLAADASAIF--------------TKMEMFN-------VLPD 141
              +V  W AMIS  +  G A+ A  +F               K+++ N         P+
Sbjct: 305 PERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPN 364

Query: 142 SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
             TF  +LT+C+       GR+    +  + + +  +    +++D+  + G I EA  + 
Sbjct: 365 EFTFATVLTSCTSSLGFILGRQ-IHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVF 423

Query: 202 TSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
             +  E DVV   A++S    + +L L E A+    RL G
Sbjct: 424 ECLP-ERDVVSCTAIISG---YAQLGLDEEALELFRRLQG 459


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 170/411 (41%), Positives = 245/411 (59%), Gaps = 4/411 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA-LNHAYW 62
           KDVV+W++M+    +    + A   F +M    ++P++FT +SVI  CA   A ++    
Sbjct: 464 KDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQ 523

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            H + I+ +      +S+AL+ MYS+ G I  A+ VF+     D+  WN+MISG A HG 
Sbjct: 524 FHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGY 583

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           +  A   F +ME   +  D +TFL ++  C+H GLV EG++YFD M   + I P +EHY 
Sbjct: 584 SMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYA 643

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            MVDL  RAG ++E   LI  M      +VWR LL ACR  K +ELG+ +   +  L   
Sbjct: 644 CMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPH 703

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           D   YVLLSN+Y    +W   + VR++M  + V+K  G SW+++   +H F A D+SHP 
Sbjct: 704 DSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPM 763

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           +  I K L  +I R K +G+ P T  VL D++E++KE  L  HSE+LALA+G++ T PGT
Sbjct: 764 SDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGT 823

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            ++I KNLR+C DCH  +KM+S +  R II+RD  RFH F GG CSCGD+W
Sbjct: 824 PLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 117/241 (48%), Gaps = 8/241 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP K+VV+W S++ G        E +  F  M +  + P+ FTFASV+   A  GAL+  
Sbjct: 161 MPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLG 220

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   ++     +  +  +L++MY+KCG ++ AK VF+ ++  D+  WN +++G+ ++
Sbjct: 221 QRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLN 280

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A  +F +           T+  ++  C++   +   R+    +  ++        
Sbjct: 281 ECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVL-KHGFHLTGNV 339

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV--AIVNISR 238
             A+ D   + G + +A  + +  T   +VV W A++S C     ++ G++  A+V  SR
Sbjct: 340 MTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGC-----IQNGDIPLAVVLFSR 394

Query: 239 L 239
           +
Sbjct: 395 M 395



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 111/220 (50%), Gaps = 9/220 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D+VSWN+++ G   N    EAL+ F E  ++  +  + T+A+VI  CA L  L  A
Sbjct: 262 METRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALA 321

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD--TVQRNDVSVWNAMISGVA 118
             +H+ +++    L   +  AL D YSKCG++  A  +F   T  RN VS W A+ISG  
Sbjct: 322 RQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVS-WTAIISGCI 380

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            +G    A  +F++M    V+P+  T+  +L A      +   + +   +++ Y   P +
Sbjct: 381 QNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLS---ILPPQIHAQVIKTNYQHIPSV 437

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
               A++    + G  E+A   I  M  + DVV W A+LS
Sbjct: 438 G--TALLASYSKFGSTEDALS-IFKMIEQKDVVAWSAMLS 474



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 123/247 (49%), Gaps = 17/247 (6%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++VVSW ++I G ++N     A+  F  M   +V P++FT+++++   A L  L     +
Sbjct: 367 RNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLK--ASLSILPPQ--I 422

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I+   +    +  AL+  YSK G  + A  +F  +++ DV  W+AM+S  A  G  
Sbjct: 423 HAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDC 482

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACS-HCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             A+ +F KM +  + P+  T   ++ AC+     V++GR+ F  +  +Y     +    
Sbjct: 483 EGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQ-FHAISIKYRYHDAICVSS 541

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS----------ACRTFKRLELGEVA 232
           A+V +  R G+I+ A  +    T + D+V W +++S          A  TF+++E   + 
Sbjct: 542 ALVSMYSRKGNIDSAQIVFERQT-DRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQ 600

Query: 233 IVNISRL 239
           +  ++ L
Sbjct: 601 MDGVTFL 607



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 125/278 (44%), Gaps = 10/278 (3%)

Query: 1   MPDKDV-VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           +P +D  V  N ++  + R     E L  F       V  D  T + V+  C  +     
Sbjct: 58  IPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVL 117

Query: 60  AYWVHNLIIEKKIELNFILSA-ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
              +H L ++   +   + +  +L+DMY KCG +    EVF+ + + +V  W ++++G A
Sbjct: 118 GEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCA 177

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQ 177
              + ++  A+F +M    + P+  TF  +L+A +  G ++ G++   H +S ++  +  
Sbjct: 178 HAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRV--HAQSVKFGCRSS 235

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACR----TFKRLELGEVAI 233
           +    +++++  + G +E+A  +   M    D+V W  L++  +      + L+L   + 
Sbjct: 236 VFVCNSLMNMYAKCGLVEDAKSVFNWMETR-DMVSWNTLMAGLQLNECELEALQLFHESR 294

Query: 234 VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKG 271
             + ++    Y  +  +   LK+   A  +   + K G
Sbjct: 295 ATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHG 332



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG-ALNHAY 61
           D+D+VSWNSMI G+ ++    +A+  FR+M +S ++ D  TF +VI GC   G  +    
Sbjct: 565 DRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQ 624

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF-DTVQRNDVSVWNAMISGVAIH 120
           +  +++ + KI       A ++D+YS+ GK+     +  D        VW  ++    +H
Sbjct: 625 YFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVH 684


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 170/411 (41%), Positives = 245/411 (59%), Gaps = 4/411 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA-LNHAYW 62
           KDVV+W++M+    +    + A   F +M    ++P++FT +SVI  CA   A ++    
Sbjct: 464 KDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQ 523

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            H + I+ +      +S+AL+ MYS+ G I  A+ VF+     D+  WN+MISG A HG 
Sbjct: 524 FHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGY 583

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           +  A   F +ME   +  D +TFL ++  C+H GLV EG++YFD M   + I P +EHY 
Sbjct: 584 SMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYA 643

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            MVDL  RAG ++E   LI  M      +VWR LL ACR  K +ELG+ +   +  L   
Sbjct: 644 CMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPH 703

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           D   YVLLSN+Y    +W   + VR++M  + V+K  G SW+++   +H F A D+SHP 
Sbjct: 704 DSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPM 763

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           +  I K L  +I R K +G+ P T  VL D++E++KE  L  HSE+LALA+G++ T PGT
Sbjct: 764 SDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGT 823

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            ++I KNLR+C DCH  +KM+S +  R II+RD  RFH F GG CSCGD+W
Sbjct: 824 PLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 117/241 (48%), Gaps = 8/241 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP K+VV+W S++ G        E +  F  M +  + P+ FTFASV+   A  GAL+  
Sbjct: 161 MPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLG 220

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   ++     +  +  +L++MY+KCG ++ AK VF+ ++  D+  WN +++G+ ++
Sbjct: 221 QRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLN 280

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A  +F +           T+  ++  C++   +   R+    +  ++        
Sbjct: 281 ECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVL-KHGFHLTGNV 339

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV--AIVNISR 238
             A+ D   + G + +A  + +  T   +VV W A++S C     ++ G++  A+V  SR
Sbjct: 340 MTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGC-----IQNGDIPLAVVLFSR 394

Query: 239 L 239
           +
Sbjct: 395 M 395



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 123/247 (49%), Gaps = 17/247 (6%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++VVSW ++I G ++N     A+  F  M   +V P++FT+++++   A L  L     +
Sbjct: 367 RNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLK--ASLSILPPQ--I 422

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I+   +    +  AL+  YSK G  + A  +F  +++ DV  W+AM+S  A  G  
Sbjct: 423 HAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDC 482

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACS-HCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             A+ +F KM +  + P+  T   ++ AC+     V++GR+ F  +  +Y     +    
Sbjct: 483 EGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQ-FHAISIKYRYHDAICVSS 541

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS----------ACRTFKRLELGEVA 232
           A+V +  R G+I+ A  +    T + D+V W +++S          A  TF+++E   + 
Sbjct: 542 ALVSMYSRKGNIDSAQIVFERQT-DRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQ 600

Query: 233 IVNISRL 239
           +  ++ L
Sbjct: 601 MDGVTFL 607



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 111/220 (50%), Gaps = 9/220 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D+VSWN+++ G   N    EAL+ F E  ++  +  + T+A+VI  CA L  L  A
Sbjct: 262 METRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALA 321

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD--TVQRNDVSVWNAMISGVA 118
             +H+ +++    L   +  AL D YSKCG++  A  +F   T  RN VS W A+ISG  
Sbjct: 322 RQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVS-WTAIISGCI 380

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            +G    A  +F++M    V+P+  T+  +L A      +   + +   +++ Y   P +
Sbjct: 381 QNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLS---ILPPQIHAQVIKTNYQHIPFV 437

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
               A++    + G  E+A   I  M  + DVV W A+LS
Sbjct: 438 G--TALLASYSKFGSTEDALS-IFKMIEQKDVVAWSAMLS 474



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 125/278 (44%), Gaps = 10/278 (3%)

Query: 1   MPDKDV-VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           +P +D  V  N ++  + R     E L  F       V  D  T + V+  C  +     
Sbjct: 58  IPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVL 117

Query: 60  AYWVHNLIIEKKIELNFILSA-ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
              +H L ++   +   + +  +L+DMY KCG +    EVF+ + + +V  W ++++G A
Sbjct: 118 GEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCA 177

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQ 177
              + ++  A+F +M    + P+  TF  +L+A +  G ++ G++   H +S ++  +  
Sbjct: 178 HAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRV--HAQSVKFGCRSS 235

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACR----TFKRLELGEVAI 233
           +    +++++  + G +E+A  +   M    D+V W  L++  +      + L+L   + 
Sbjct: 236 VFVCNSLMNMYAKCGLVEDAKSVFNWMETR-DMVSWNTLMAGLQLNECELEALQLFHESR 294

Query: 234 VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKG 271
             + ++    Y  +  +   LK+   A  +   + K G
Sbjct: 295 ATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHG 332



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG-ALNHAY 61
           D+D+VSWNSMI G+ ++    +A+  FR+M +S ++ D  TF +VI GC   G  +    
Sbjct: 565 DRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQ 624

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF-DTVQRNDVSVWNAMISGVAIH 120
           +  +++ + KI       A ++D+YS+ GK+     +  D        VW  ++    +H
Sbjct: 625 YFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVH 684


>gi|413952609|gb|AFW85258.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
 gi|413952610|gb|AFW85259.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
 gi|413952611|gb|AFW85260.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
          Length = 630

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 177/422 (41%), Positives = 250/422 (59%), Gaps = 18/422 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRF-------FREMLSSKVEPDKFTFASVIYGCAR 53
           MP +DV +WN+++ G  +    + AL         FRE L  + EP+  T  + +  CA+
Sbjct: 215 MPVRDVATWNALLAGLAQGTEPNLALLLFRRLAGSFRE-LPPREEPNAVTVVAALSACAQ 273

Query: 54  LGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV--WN 111
           LG L     VH          N  +  ALIDMYSKCG +  A EVF +++  D ++  +N
Sbjct: 274 LGTLKDGLAVHEFARTIGAVDNVCVGNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYN 333

Query: 112 AMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR 171
           A I  ++IHG   DA  +F +M    + PD IT+L ++  C+H GLV++GR+ FD MR  
Sbjct: 334 ATIQALSIHGHGEDALKLFDEMPA-RIEPDEITYLAVMGGCNHAGLVDDGRRVFDSMR-- 390

Query: 172 YSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV 231
             + P ++HYG +VDLLGRAG + EAY +I SM    D+V+W+ LL A +    ++L E+
Sbjct: 391 --VPPNMKHYGTIVDLLGRAGRLAEAYDMIMSMPFPADIVLWQTLLGAAKMHGNVDLAEL 448

Query: 232 AIVNISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIH 288
           A   ++ L   + GDYVLLSN+Y    RW     VR+ M+   V+K  G S+ E+ GV+H
Sbjct: 449 AATKLADLGSNVDGDYVLLSNVYASKSRWVDVGRVRDTMRSNDVKKVPGFSYTEIDGVMH 508

Query: 289 QFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLAL 348
           +F  GD+ H   + I + L  +  R  + G+ P T  VL D+ EEEK+  L +HSEKLA+
Sbjct: 509 KFINGDKEHMRWREIYRALDEIGSRICALGYEPETSNVLHDIGEEEKQYALSYHSEKLAI 568

Query: 349 AYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGD 408
           A+G++ T PG  IR+ KNLR C DCH   K+IS+   RVII+RDR RFHRFE G CSC D
Sbjct: 569 AFGLISTPPGETIRVIKNLRTCGDCHVVAKLISKAYNRVIIIRDRARFHRFEDGHCSCRD 628

Query: 409 YW 410
           YW
Sbjct: 629 YW 630



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 42/222 (18%)

Query: 40  DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF 99
           D  + +  +   AR         +H  +    +  +  L   L+D Y+KCG +  A++VF
Sbjct: 153 DALSLSFALKATARCSDAFATLQLHATLFRLGVAADVRLMTTLLDSYAKCGDVASARKVF 212

Query: 100 DTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEM--FNVL-----PDSITFLGLLTAC 152
           D +   DV+ WNA+++G+A  G   + + +  +     F  L     P+++T +  L+AC
Sbjct: 213 DEMPVRDVATWNALLAGLA-QGTEPNLALLLFRRLAGSFRELPPREEPNAVTVVAALSAC 271

Query: 153 SHCGLVEEGRKYFDHMR------------------------SR-----YSIQPQ---LEH 180
           +  G +++G    +  R                        SR     +SI+ +   L  
Sbjct: 272 AQLGTLKDGLAVHEFARTIGAVDNVCVGNALIDMYSKCGSLSRALEVFHSIKLEDRTLVS 331

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMT--MEPDVVVWRALLSAC 220
           Y A +  L   GH E+A  L   M   +EPD + + A++  C
Sbjct: 332 YNATIQALSIHGHGEDALKLFDEMPARIEPDEITYLAVMGGC 373


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
            sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 173/413 (41%), Positives = 255/413 (61%), Gaps = 7/413 (1%)

Query: 4    KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
            +D +SWNSMI G++ N    EA+     M+ S+   D  TF+ V+  CA + AL     +
Sbjct: 651  RDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACASVAALERGMEM 710

Query: 64   HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
            H   +   +E + ++ +AL+DMYSKCG+I  A +VF ++ + +   WN+MISG A HGL 
Sbjct: 711  HAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLG 770

Query: 124  ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
              A  IF +M+     PD +TF+ +L+ACSH GLVE G  YF+ M   Y I P++EHY  
Sbjct: 771  RKALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERGLDYFELMED-YGILPRIEHYSC 829

Query: 184  MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFK---RLELGEVA---IVNIS 237
            ++DLLGRAG +++    +  M M+P+ ++WR +L AC+  K   +++LG  A   ++ + 
Sbjct: 830  VIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRMLLELE 889

Query: 238  RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 +YVL S  +  + RW+     R  MK   V+K  G+SW+ L   +H F AGDRSH
Sbjct: 890  PQNPVNYVLSSKFHAAIGRWEDTAKARAAMKGAAVKKEAGRSWVTLTDGVHTFIAGDRSH 949

Query: 298  PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            P  + I + L  LIQ+ ++ G++P TE VL D+ EE KE  L +HSEKLA+A+ + ++S 
Sbjct: 950  PNTKEIYEKLNFLIQKIRNAGYVPLTEYVLHDLEEENKEELLRYHSEKLAVAFVLTRSSS 1009

Query: 358  GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  IRI KNLR+C DCH+  + IS+++ R II+RD IRFH F+ G CSCGDYW
Sbjct: 1010 GGPIRIMKNLRVCGDCHTAFRYISQIVGRQIILRDSIRFHHFKDGKCSCGDYW 1062



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 109/220 (49%), Gaps = 2/220 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D +SWN++I    +N   + A+  +  M  + + P  F   S +  CA LG L   
Sbjct: 444 MEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAG 503

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA-I 119
             +H   ++  + L+  +S AL+ MY +CG++    E+F+++  +DV  WN+++  +A  
Sbjct: 504 QQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASS 563

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
                ++  +F+ M    ++P+ +TF+  L A +   ++E G++    M  ++ +     
Sbjct: 564 QAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVML-KHGVTEDNA 622

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A++    ++G ++    L + M+   D + W +++S 
Sbjct: 623 VDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISG 662



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 94/209 (44%), Gaps = 14/209 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML--SSKVEPDKFTFASVIYGCARLGA-- 56
           MP ++ VSW  +I G V +   ++A   FR ML       P  FTF SV+  C   G   
Sbjct: 126 MPGRNAVSWTCLISGHVLSGLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDR 185

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKC--GKIQMAKEVFDTVQRNDVSVWNAMI 114
           L  A  VH L+ + +   N  +  ALI MY  C  G   +A+ VFDT    D+  WNA++
Sbjct: 186 LGFAVQVHGLVSKTEFTSNTTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALM 245

Query: 115 SGVAIHGLAADASAIFTKMEM----FNVLPDSITFLGLLTAC--SHCGLVEEGRKYFDHM 168
           S  A  G A     +F  M+       + P   TF  L+TA   S C L    + +   +
Sbjct: 246 SVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTFGSLITATYLSSCSLGLLDQLFVRVL 305

Query: 169 RSRYSIQPQLEHYGAMVDLLGRAGHIEEA 197
           +S  S    L    A+V    R G ++EA
Sbjct: 306 KSGCS--SDLYVGSALVSAFARHGMLDEA 332



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 112/236 (47%), Gaps = 9/236 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRN-ARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           M   DVVSWNS++G    + A   E+++ F  M+ S + P+K TF + +     L  L  
Sbjct: 545 MSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLEL 604

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
              +H+++++  +  +  +  AL+  Y+K G +   + +F  +  R D   WN+MISG  
Sbjct: 605 GKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYI 664

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQ 177
            +G   +A      M     + D  TF  +L AC+    +E G +     +RS       
Sbjct: 665 YNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHLESDVV 724

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI 233
           +E   A+VD+  + G I+ A  +  SM+ + +   W +++S    + R  LG  A+
Sbjct: 725 VE--SALVDMYSKCGRIDYASKVFHSMS-QKNEFSWNSMISG---YARHGLGRKAL 774



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 106/227 (46%), Gaps = 18/227 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFT--------FASVIYGC 51
           + +++ V+ N +I G V+    + A   F     S+ V  D +         F++   G 
Sbjct: 339 LKERNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNVDTYVVLLSAIAEFSTAEQGL 398

Query: 52  ARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWN 111
            R G   HA+ +    I +KI +    S  L++MY+KCG I  A  VF  ++  D   WN
Sbjct: 399 -RKGREVHAHVLRAGHIYRKIAV----SNGLVNMYAKCGAIDKACRVFQLMEARDRISWN 453

Query: 112 AMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRS 170
            +I+ +  +G    A   +  M   ++ P +   +  L++C+  GL+  G++ + D ++ 
Sbjct: 454 TIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKW 513

Query: 171 RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              +   + +  A+V + G  G + E + +  SM+   DVV W +++
Sbjct: 514 GLYLDTSVSN--ALVKMYGECGRMSECWEIFNSMSAH-DVVSWNSIM 557



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 46/97 (47%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K+  SWNSMI G+ R+    +AL  F EM  S   PD  TF SV+  C+  G +   
Sbjct: 749 MSQKNEFSWNSMISGYARHGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERG 808

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE 97
                L+ +  I       + +ID+  + G++   +E
Sbjct: 809 LDYFELMEDYGILPRIEHYSCVIDLLGRAGELDKIQE 845



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  ++++ +  +  L+  L++ Y+K  ++  A+ VFD +   +   W  +ISG  + GL
Sbjct: 87  LHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGL 146

Query: 123 AADASAIFTKM--EMFNVLPDSITFLGLLTACSHCG 156
             DA  +F  M  E     P S TF  +L AC   G
Sbjct: 147 PEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSG 182



 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 45/230 (19%), Positives = 102/230 (44%), Gaps = 17/230 (7%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREML--SSKVE--PDKFTFASVIYGC----AR 53
           P +D+++WN+++  + +          FR M    S +E  P + TF S+I         
Sbjct: 234 PVRDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTFGSLITATYLSSCS 293

Query: 54  LGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAM 113
           LG L+  +     +++     +  + +AL+  +++ G +  AK+++  ++  +    N +
Sbjct: 294 LGLLDQLFV---RVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNGL 350

Query: 114 ISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE----GRKYFDHMR 169
           I+G+        A+ IF        + +  T++ LL+A +     E+    GR+   H+ 
Sbjct: 351 IAGLVKQQHGEAAAEIFMGARDSAAV-NVDTYVVLLSAIAEFSTAEQGLRKGREVHAHVL 409

Query: 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               I  ++     +V++  + G I++A  +   M    D + W  +++A
Sbjct: 410 RAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEAR-DRISWNTIITA 458


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 176/409 (43%), Positives = 239/409 (58%), Gaps = 5/409 (1%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           VSW SMI  +V+N   ++A   F       +EP  F  +SV+  CA L  L     VH L
Sbjct: 276 VSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTL 335

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
            ++  +  N  + +AL+DMY KCG I+ A+  FD +   ++  WNAMI G A  G A  A
Sbjct: 336 AVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMA 395

Query: 127 SAIFTKMEMFN--VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
             +F +M   +  V P+ +TF+ +L+ACS  G V  G + F+ MR RY I+P  EHY  +
Sbjct: 396 VTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACV 455

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNI---SRLMG 241
           VDLLGRAG +E+AY  I  M + P V VW ALL A + F + ELG+VA  N+     L  
Sbjct: 456 VDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDS 515

Query: 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
           G++VLLSNM+    RW+ A  VR+ MK  G++K  G SW+     +H F+A D SH    
Sbjct: 516 GNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNS 575

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
            I  +L  L    ++ G++P T   L D+ EEEK   +++HSEK+ALA+G++    G  I
Sbjct: 576 EIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPI 635

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           RI+KNLRIC DCHS IK IS ++ R IIVRD   FHRF    CSC DYW
Sbjct: 636 RITKNLRICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 684



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 99/216 (45%), Gaps = 2/216 (0%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P++ VV+W ++I G V+N RF  AL  F  M    ++P+ FTF         L +     
Sbjct: 69  PNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGK 128

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            VH L ++     +  +  +  DMYSK G  + A+++FD +   +++ WNA +S   + G
Sbjct: 129 QVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEG 188

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              DA   F +       P+ ITF   L AC+    +  GR+    +  +   +  +   
Sbjct: 189 RYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVL-QSGFEADVSVA 247

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             ++D  G+  H      +I S   +P+ V W +++
Sbjct: 248 NGLIDFYGKC-HQVGCSEIIFSGISKPNDVSWCSMI 282



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 4/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++++ +WN+ +   V   R+D+AL  F E      EP+  TF + +  CA    L   
Sbjct: 169 MPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLG 228

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR-NDVSVWNAMISGVAI 119
             +H  +++   E +  ++  LID Y KC ++  ++ +F  + + NDVS W +MI     
Sbjct: 229 RQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVS-WCSMIVSYVQ 287

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +     A  +F +     + P       +L+AC+   ++E G K    +  +  +   + 
Sbjct: 288 NDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVG-KSVHTLAVKACVVGNIF 346

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              A+VD+ G+ G IE+A      M  E ++V W A++
Sbjct: 347 VGSALVDMYGKCGSIEDAERAFDEMP-ERNLVTWNAMI 383



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 80/158 (50%), Gaps = 14/158 (8%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML--SSKVEPDKFTFASVIYGCARLGALN 58
           MP++++V+WN+MIGG+    + D A+  F EM   S +V P+  TF  V+  C+R G++N
Sbjct: 371 MPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVN 430

Query: 59  HAYWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISG 116
               +   +  +  IE      A ++D+  + G ++ A +    +  R  VSVW A++  
Sbjct: 431 VGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLG- 489

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
                    AS +F K E+  V  D++  L  L + +H
Sbjct: 490 ---------ASKMFGKSELGKVAADNLFELDPLDSGNH 518



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 79/223 (35%), Gaps = 47/223 (21%)

Query: 45  ASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR 104
           ++V   C+RLG   HA  +  L       L   +   L++MYSK  +   A+ +      
Sbjct: 15  SAVSTQCSRLGRAAHAQIIKTL----DNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPN 70

Query: 105 NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC------------ 152
             V  W A+I+G   +G    A   F+ M   ++ P+  TF     A             
Sbjct: 71  RSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQV 130

Query: 153 -----------------------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD--- 186
                                  S  GL EE RK FD M  R      +  + A +    
Sbjct: 131 HALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPER-----NIATWNAYLSNSV 185

Query: 187 LLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG 229
           L GR      A+        EP+++ + A L+AC     L LG
Sbjct: 186 LEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLG 228


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 169/414 (40%), Positives = 248/414 (59%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +K+++SW  MI G   N   +E L+ F  M     EP  + F+  I  CA LGA  + 
Sbjct: 377 MKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNG 436

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H  +++   + +     ALI MY+KCG ++ A++VF T+   D   WNA+I+ +  H
Sbjct: 437 QQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQH 496

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  A+A  ++ +M    + PD IT L +LTACSH GLV++GRKYFD M + Y I P  +H
Sbjct: 497 GHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADH 556

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  ++DLL R+G   +A  +I S+  +P   +W ALLS CR    +ELG +A   +  L+
Sbjct: 557 YARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLI 616

Query: 241 ---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y+LLSNM+    +W+    VR++M+ +GV+K    SW+E+   +H F   D SH
Sbjct: 617 PEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSH 676

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDV-SEEEKEGNLYHHSEKLALAYGILKTS 356
           PEA+A+   L  L +  +  G++P T  VL DV S+  KE  L  HSEK+A+A+G++K  
Sbjct: 677 PEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLP 736

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PGT IRI KNLR C DCH++ + +S +++R II+RDR RFH F  G CSCG++W
Sbjct: 737 PGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 114/245 (46%), Gaps = 34/245 (13%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           +V++N+MI G+V    + EAL   R M+SS +E D+FT+ SVI  CA  G L     VH 
Sbjct: 251 LVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHA 310

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
            ++ ++ + +F    +L+ +Y KCGK   A+ +F+ +   D+  WNA++SG    G   +
Sbjct: 311 YVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGE 369

Query: 126 ASAIFTKMEMFNVL-------------------------------PDSITFLGLLTACSH 154
           A  IF +M+  N+L                               P    F G + +C+ 
Sbjct: 370 AKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAV 429

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
            G    G++Y   +  +      L    A++ +  + G +EEA  +  +M    D V W 
Sbjct: 430 LGAYCNGQQYHAQLL-KIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPC-LDSVSWN 487

Query: 215 ALLSA 219
           AL++A
Sbjct: 488 ALIAA 492



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 108/254 (42%), Gaps = 42/254 (16%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D V +N+MI GF  N     A+  F +M     +PD FTFASV+ G A L A +    V
Sbjct: 111 RDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLA-LVADDEKQCV 169

Query: 64  HNLIIEKKIELNFI--LSAALIDMYSKCGK----IQMAKEVFDTVQRNDVSVW------- 110
                  K    +I  +S AL+ +YSKC      +  A++VFD +   D   W       
Sbjct: 170 QFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGY 229

Query: 111 -------------------------NAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145
                                    NAMISG    G   +A  +  +M    +  D  T+
Sbjct: 230 VKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTY 289

Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
             ++ AC+  GL++ G++   ++  R       ++  ++V L  + G  +EA  +   M 
Sbjct: 290 PSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDN--SLVSLYYKCGKFDEARAIFEKMP 347

Query: 206 MEPDVVVWRALLSA 219
            + D+V W ALLS 
Sbjct: 348 AK-DLVSWNALLSG 360



 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 2/102 (1%)

Query: 53  RLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA 112
           R  +L  A  VH  II    +    +   LID+Y K  ++  A+++FD +   D      
Sbjct: 26  RRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTT 85

Query: 113 MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
           M+SG    G    A  +F K  +   + D++ +  ++T  SH
Sbjct: 86  MVSGYCASGDITLARGVFEKAPV--CMRDTVMYNAMITGFSH 125


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 164/414 (39%), Positives = 248/414 (59%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KDV++W  M   + +N    EAL+ F+EM      P   T  +V+  CA L AL   
Sbjct: 369 MGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKG 428

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ IIE    +  ++  ALI+MY KCGK+  A+ VF+ + + D+ VWN+M+   A H
Sbjct: 429 RQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQH 488

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +   +F +M++     D+++F+ +L+A SH G V +G +YF  M   +SI P  E 
Sbjct: 489 GYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPEL 548

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMT-MEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           YG +VDLLGRAG I+EA  ++  ++   PD ++W  LL ACRT  + +  + A   ++  
Sbjct: 549 YGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLER 608

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YV+LSN+Y     WD    +R++M+ +GV+K  G+S +E+   +H+F  GDRS
Sbjct: 609 DPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRS 668

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP    I   L  L    ++ G++P T+++L DV +E KE  L++HSE+LA+A+G++ T 
Sbjct: 669 HPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLMSTP 728

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PGT +R+ KNLR+C DCH+  K IS+L  R I+VRD  RFH F+ G CSC DYW
Sbjct: 729 PGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 137/278 (49%), Gaps = 18/278 (6%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDV +W  MIG + +   +D AL  F +M    V P K T+ +++  CA   +L     +
Sbjct: 69  KDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEI 128

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  I+++  E +  +  ALI+MY+KCG ++ A + F  ++  DV  W AMI+    H   
Sbjct: 129 HGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQF 188

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
           A A  ++ +M++  V+P+ IT   +  A      + EG+  +  + SR  ++  +    +
Sbjct: 189 ALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRV-MESDVRVMNS 247

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS----------ACRTFKRLELGEVAI 233
            +++ G AG + +A  L   M ++ DVV W  +++          A R F RL+   +  
Sbjct: 248 AMNMFGNAGLLGDARRLFEDM-VDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKA 306

Query: 234 VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKG 271
            +I+      +VL+ N+Y  L      + + E++K+ G
Sbjct: 307 NDIT------FVLMLNVYTSLTSLAKGKVIHELVKEAG 338



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 115/220 (52%), Gaps = 4/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D+DVV+WN +I  +V+N  F EA+R F  +    ++ +  TF  ++     L +L   
Sbjct: 268 MVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKG 327

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L+ E   + + +++ AL+ +Y +C     A ++F  +   DV  W  M    A +
Sbjct: 328 KVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQN 387

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
           G   +A  +F +M++    P S T + +L  C+H   +++GR+   H + + + ++  +E
Sbjct: 388 GFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVE 447

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A++++ G+ G + EA  +   M  + D++VW ++L A
Sbjct: 448 --TALINMYGKCGKMAEARSVFEKMA-KRDILVWNSMLGA 484



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 96/192 (50%), Gaps = 2/192 (1%)

Query: 38  EPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE 97
           +PD   F +++  C+    ++H   VH  + ++  E N ++   LI MY++CG +  A++
Sbjct: 2   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 61

Query: 98  VFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL 157
           VF+ ++R DV  W  MI      G    A  +F +M+  +V+P  +T++ +L AC+    
Sbjct: 62  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 121

Query: 158 VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           +++G +    +  +   +  +    A++++  + G +  A+     +    DVV W A++
Sbjct: 122 LKDGMEIHGQILQQ-GFEGDVFVGTALINMYNKCGSVRGAWDSFKRLE-HRDVVSWTAMI 179

Query: 218 SACRTFKRLELG 229
           +AC    +  L 
Sbjct: 180 AACVQHDQFALA 191


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 171/413 (41%), Positives = 244/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P   +VS+N+ I G  +N   + AL +F  M   +V PD  TF S I  C+ L AL   
Sbjct: 235 LPSLTIVSFNTTIAGRTQNGDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQG 294

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +I+  ++    +  +L+ MYS+CG +  ++ V+D     D+ + +AMIS    H
Sbjct: 295 QQVHAQVIKAGVDKVVPVITSLVHMYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFH 354

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +M      P+ +TFL LL ACSH GL +EG ++F+ M   Y  QP ++H
Sbjct: 355 GQGHKAVELFKQMMNGGAEPNEVTFLALLYACSHSGLKDEGLEFFELMTKTYGFQPSVKH 414

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE-VA--IVNIS 237
           Y  +VDLLGR+G ++EA  LI SM +  D V+W+ LLSAC+T K  ++ E +A  ++   
Sbjct: 415 YNCIVDLLGRSGCLDEAEALILSMPVRADGVIWKTLLSACKTQKNFDMAERIAERVIESD 474

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 YVLLSN+    KRW     VR+IM++K +RK  G SW+E  G +HQF  GD+SH
Sbjct: 475 PRDSAPYVLLSNIRATSKRWGDVTEVRKIMREKDIRKEPGVSWVEHKGQVHQFCTGDKSH 534

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    ID+ L  ++ + +  G+ P   +V  D+ +EEKE +L HHSEKLA+A+  L    
Sbjct: 535 PRQGEIDEYLKEMMGKIRQCGYAPDMTMVFHDMEDEEKEVSLTHHSEKLAIAFAFLNLPE 594

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH  IK+IS++  R I+VRD  RFH F  G CSCGDYW
Sbjct: 595 GVPIRVMKNLRVCDDCHVAIKLISQVTGREIVVRDVSRFHHFRDGRCSCGDYW 647



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 103/253 (40%), Gaps = 33/253 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++V +WN+M+ G       +++L+FF  M    + PD+F   SV   CA L  +   
Sbjct: 134 MPTRNVATWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGLGSVFRCCAGLLDVVSG 193

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++   ++ +  +  +L  MY +CG +   + V   +    +  +N  I+G   +
Sbjct: 194 RQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFNTTIAGRTQN 253

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKY---------------- 164
           G +  A   F+ M    V PD +TF+  ++ CS    + +G++                 
Sbjct: 254 GDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQVHAQVIKAGVDKVVPVI 313

Query: 165 --FDHMRSRYSIQPQLEH------------YGAMVDLLGRAGHIEEAYGLITSMT---ME 207
               HM SR       E               AM+   G  G   +A  L   M     E
Sbjct: 314 TSLVHMYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFHGQGHKAVELFKQMMNGGAE 373

Query: 208 PDVVVWRALLSAC 220
           P+ V + ALL AC
Sbjct: 374 PNEVTFLALLYAC 386



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 89/224 (39%), Gaps = 37/224 (16%)

Query: 40  DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF 99
           D+FT  +++   A LG L  A  +   I ++ +    IL    I    K G +  A+E+F
Sbjct: 76  DRFTTNNLLLAYADLGDLPTARHLFEGISKRNVMSWNILIGGCI----KNGDLGSARELF 131

Query: 100 DTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVE 159
           D +   +V+ WNAM++G+   GL  D+   F  M    + PD      +   C+    V 
Sbjct: 132 DKMPTRNVATWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGLGSVFRCCAGLLDVV 191

Query: 160 EGRKYFDH-----MRSRYSIQPQLEHY----GAMVD-------------------LLGRA 191
            GR+   +     M S   +   L H     G + +                   + GR 
Sbjct: 192 SGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFNTTIAGRT 251

Query: 192 GHIE-----EAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE 230
            + +     E + ++  + + PDVV + + +S C     L  G+
Sbjct: 252 QNGDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQ 295


>gi|293334801|ref|NP_001169361.1| uncharacterized protein LOC100383228 [Zea mays]
 gi|224028917|gb|ACN33534.1| unknown [Zea mays]
          Length = 596

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 177/422 (41%), Positives = 250/422 (59%), Gaps = 18/422 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRF-------FREMLSSKVEPDKFTFASVIYGCAR 53
           MP +DV +WN+++ G  +    + AL         FRE L  + EP+  T  + +  CA+
Sbjct: 181 MPVRDVATWNALLAGLAQGTEPNLALLLFRRLAGSFRE-LPPREEPNAVTVVAALSACAQ 239

Query: 54  LGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV--WN 111
           LG L     VH          N  +  ALIDMYSKCG +  A EVF +++  D ++  +N
Sbjct: 240 LGTLKDGLAVHEFARTIGAVDNVCVGNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYN 299

Query: 112 AMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR 171
           A I  ++IHG   DA  +F +M    + PD IT+L ++  C+H GLV++GR+ FD MR  
Sbjct: 300 ATIQALSIHGHGEDALKLFDEMPA-RIEPDEITYLAVMGGCNHAGLVDDGRRVFDSMR-- 356

Query: 172 YSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV 231
             + P ++HYG +VDLLGRAG + EAY +I SM    D+V+W+ LL A +    ++L E+
Sbjct: 357 --VPPNMKHYGTIVDLLGRAGRLAEAYDMIMSMPFPADIVLWQTLLGAAKMHGNVDLAEL 414

Query: 232 AIVNISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIH 288
           A   ++ L   + GDYVLLSN+Y    RW     VR+ M+   V+K  G S+ E+ GV+H
Sbjct: 415 AATKLADLGSNVDGDYVLLSNVYASKSRWVDVGRVRDTMRSNDVKKVPGFSYTEIDGVMH 474

Query: 289 QFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLAL 348
           +F  GD+ H   + I + L  +  R  + G+ P T  VL D+ EEEK+  L +HSEKLA+
Sbjct: 475 KFINGDKEHMRWREIYRALDEIGSRICALGYEPETSNVLHDIGEEEKQYALSYHSEKLAI 534

Query: 349 AYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGD 408
           A+G++ T PG  IR+ KNLR C DCH   K+IS+   RVII+RDR RFHRFE G CSC D
Sbjct: 535 AFGLISTPPGETIRVIKNLRTCGDCHVVAKLISKAYNRVIIIRDRARFHRFEDGHCSCRD 594

Query: 409 YW 410
           YW
Sbjct: 595 YW 596



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 42/222 (18%)

Query: 40  DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF 99
           D  + +  +   AR         +H  +    +  +  L   L+D Y+KCG +  A++VF
Sbjct: 119 DALSLSFALKATARCSDAFATLQLHATLFRLGVAADVRLMTTLLDSYAKCGDVASARKVF 178

Query: 100 DTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEM--FNVL-----PDSITFLGLLTAC 152
           D +   DV+ WNA+++G+A  G   + + +  +     F  L     P+++T +  L+AC
Sbjct: 179 DEMPVRDVATWNALLAGLA-QGTEPNLALLLFRRLAGSFRELPPREEPNAVTVVAALSAC 237

Query: 153 SHCGLVEEGRKYFDHMR------------------------SR-----YSIQPQ---LEH 180
           +  G +++G    +  R                        SR     +SI+ +   L  
Sbjct: 238 AQLGTLKDGLAVHEFARTIGAVDNVCVGNALIDMYSKCGSLSRALEVFHSIKLEDRTLVS 297

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMT--MEPDVVVWRALLSAC 220
           Y A +  L   GH E+A  L   M   +EPD + + A++  C
Sbjct: 298 YNATIQALSIHGHGEDALKLFDEMPARIEPDEITYLAVMGGC 339


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 163/409 (39%), Positives = 248/409 (60%), Gaps = 3/409 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D  +WN++IGG + N R +EA+  FR+M     +P++ T +S++  C+    L     +H
Sbjct: 365 DEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIH 424

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             +       +   + AL+ MY+KCG + +++ VFD ++R DV  WN MI   A+HG   
Sbjct: 425 CYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGK 484

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           +A  +F KM +  V P+S+TF G+L+ CSH  LVEEG + F+ M   + ++P   HY  +
Sbjct: 485 EALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCV 544

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMG 241
           VD+  RAG + EAY  I  M MEP    W ALL+ACR +K +EL +++   +  I     
Sbjct: 545 VDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNNP 604

Query: 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
           G+YV L N+    K W  A  VR +MK++G+ K+ G SWL++   +H F  GD+S+ E+ 
Sbjct: 605 GNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESD 664

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
            I   L  L+++ K  G+ P T+ VL D+ +EEK  +L +HSEKLA+A+GIL  +  + I
Sbjct: 665 KIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTI 724

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           R+ KNLRIC DCH+ IK +S+++  +I+VRD +RFH F+ G CSC D W
Sbjct: 725 RVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSCKDLW 773



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 125/316 (39%), Gaps = 82/316 (25%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +DVVSW S+   +V+     + +  FREM  S V+P+  T +S++  CA L  L     +
Sbjct: 228 RDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEI 287

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDV---------------- 107
           H   +   + +N  + +AL+ +Y+KC  ++ A+ VFD +   DV                
Sbjct: 288 HGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEY 347

Query: 108 -------------------SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGL 148
                              + WNA+I G   +G + +A  +F KM+     P+ IT   +
Sbjct: 348 EKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSI 407

Query: 149 LTACS-----------------------------------HCGLVEEGRKYFDHMRSRYS 173
           L ACS                                    CG +   R  FD MR +  
Sbjct: 408 LPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDV 467

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM---EPDVVVWRALLSACRTFKRLELGE 230
           +      +  M+      G+ +EA  L   M +   +P+ V +  +LS C   + +E G 
Sbjct: 468 VA-----WNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEG- 521

Query: 231 VAIVNISRLMGGDYVL 246
              V I   MG D+++
Sbjct: 522 ---VQIFNSMGRDHLV 534



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 101/238 (42%), Gaps = 2/238 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  D  + +++I     +   +EA++ +  +    ++PD   F +    CA  G     
Sbjct: 124 IPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALRV 183

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+      +  +  +  ALI  Y KC  ++ A+ VFD +   DV  W ++ S     
Sbjct: 184 KEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKC 243

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G       +F +M    V P+ +T   +L AC+    ++ G++       R+ +   L  
Sbjct: 244 GFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKE-IHGFAVRHGMVVNLFV 302

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
             A+V L  +   + EA  ++  +    DVV W  +L+A    K  E G    + +SR
Sbjct: 303 CSALVSLYAKCLSVREAR-MVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSR 359



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 3/143 (2%)

Query: 78  LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFN 137
           L   LI +    G    A+++FD + + D +  + +IS +  HGL+ +A  I++ ++   
Sbjct: 100 LGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERG 159

Query: 138 VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEA 197
           + PD   FL    AC+  G     ++  D   +R  +   +    A++   G+   +E A
Sbjct: 160 IKPDMPVFLAAAKACAVSGDALRVKEVHDDA-TRCGVMSDVFVGNALIHAYGKCKCVEGA 218

Query: 198 YGLITSMTMEPDVVVWRALLSAC 220
             +   + +  DVV W + LS+C
Sbjct: 219 RRVFDDLVVR-DVVSWTS-LSSC 239


>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 682

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 171/413 (41%), Positives = 250/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+K+VVSW +++  + +N  +++AL+ F +M    V+P++FT+A  +  CA L AL   
Sbjct: 270 LPEKNVVSWTAVMTAYTQNELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGLAALRTG 329

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +   +++     + ++S AL++MYSK G I+ A  VF ++   DV  WN +I+G A H
Sbjct: 330 NALGACVMKTGHWDHLLVSNALMNMYSKSGSIEDAHRVFISMPLRDVVSWNLIITGYAHH 389

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GLA +    F  M    V+P  +TF+G+L+AC+  GLV+E   Y + M     I P  EH
Sbjct: 390 GLAREGMEAFHSMLSAAVIPSYVTFVGVLSACAQLGLVDEAFYYLNTMMKEVGITPGKEH 449

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MV LL R G ++EA   I +  +  DVV WR+LL++C+ +K   LG      I +L 
Sbjct: 450 YTCMVGLLCRVGRLDEAERFIVNNCIGTDVVAWRSLLNSCQVYKNYGLGHRVAEQILQLE 509

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D   YVLLSNMY    RWD    VR+ M+++ VRKS G SW+ +   +H F + ++ H
Sbjct: 510 PSDVGTYVLLSNMYAKANRWDGVVKVRKHMRERAVRKSPGVSWIHVGSDVHVFTSEEKVH 569

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+   I K L  LI + K+ G++P   +VL D+ +E KE +L +HSEKLALA+G++ T  
Sbjct: 570 PQMDQIAKKLEELIDQIKAIGYVPNFAVVLHDIDDERKEEHLMYHSEKLALAFGLIHTPK 629

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  I I KNLRIC DCH  IK+IS +  R I+VRD +RFH  EGG+CSC DYW
Sbjct: 630 GATIHIMKNLRICDDCHVAIKLISVVTSRKIVVRDAVRFHCIEGGICSCNDYW 682



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 107/224 (47%), Gaps = 20/224 (8%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D  ++NSMI G++   + D +L   R M     + D  ++ +V+  CA +        VH
Sbjct: 173 DAFAFNSMINGYLDRGQLDGSLGIVRNMTGEAEKWDYVSYVAVLGHCASMKDSVLGAQVH 232

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
              ++K++ELN  + +AL+DMY KC  +  A   F+ +   +V  W A+++    + L  
Sbjct: 233 AQALKKRLELNVYVGSALVDMYGKCDHVHDANRAFEVLPEKNVVSWTAVMTAYTQNELYE 292

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK---------YFDHMRSRYSIQ 175
           DA  +F  MEM  V P+  T+   L +C+    +  G           ++DH+       
Sbjct: 293 DALQLFLDMEMEGVQPNEFTYAVALNSCAGLAALRTGNALGACVMKTGHWDHLLVS---- 348

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                  A++++  ++G IE+A+ +  SM +  DVV W  +++ 
Sbjct: 349 ------NALMNMYSKSGSIEDAHRVFISMPLR-DVVSWNLIITG 385



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 111/242 (45%), Gaps = 26/242 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCAR-----LG 55
           MP ++ VS N ++ G+  + R  E+L+  R +       +++  ++ +   A      +G
Sbjct: 71  MPFRNAVSANLLMSGYASSGRHKESLQLLRVV---DFGMNEYVLSAAVSATANVRSYDMG 127

Query: 56  ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
              H Y V     E++   N     A++ MY +C  ++ A +VF++V   D   +N+MI+
Sbjct: 128 RQCHGYAVKAGFAEQRYVFN-----AVLYMYCQCAHMEDASKVFESVSGFDAFAFNSMIN 182

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE----GRKYFDHMRSR 171
           G    G    +  I   M       D ++++ +L    HC  +++     + +   ++ R
Sbjct: 183 GYLDRGQLDGSLGIVRNMTGEAEKWDYVSYVAVL---GHCASMKDSVLGAQVHAQALKKR 239

Query: 172 YSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV 231
             +   +    A+VD+ G+  H+ +A      +  E +VV W A+++A   + + EL E 
Sbjct: 240 LELNVYVG--SALVDMYGKCDHVHDANRAFEVLP-EKNVVSWTAVMTA---YTQNELYED 293

Query: 232 AI 233
           A+
Sbjct: 294 AL 295



 Score = 38.1 bits (87), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 75/192 (39%), Gaps = 42/192 (21%)

Query: 74  LNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIHG----------- 121
            + +L   LI  Y+KCG++ +A+ VFD +  RN VS  N ++SG A  G           
Sbjct: 43  FDVVLHNNLISFYAKCGRVGLARTVFDAMPFRNAVSA-NLLMSGYASSGRHKESLQLLRV 101

Query: 122 -----------LAADASAIFTKMEM----------FNVLPDSITFLGLLTACSHCGLVEE 160
                       A  A+A     +M                   F  +L     C  +E+
Sbjct: 102 VDFGMNEYVLSAAVSATANVRSYDMGRQCHGYAVKAGFAEQRYVFNAVLYMYCQCAHMED 161

Query: 161 GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP---DVVVWRALL 217
             K F+ +    +       + +M++     G ++ + G++ +MT E    D V + A+L
Sbjct: 162 ASKVFESVSGFDAFA-----FNSMINGYLDRGQLDGSLGIVRNMTGEAEKWDYVSYVAVL 216

Query: 218 SACRTFKRLELG 229
             C + K   LG
Sbjct: 217 GHCASMKDSVLG 228


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 167/409 (40%), Positives = 241/409 (58%), Gaps = 3/409 (0%)

Query: 5    DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
            D+V+WN MI G+       EAL FF +M    V P+  +   ++  CA L  L     +H
Sbjct: 725  DLVTWNGMISGYAMWGCGKEALAFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIH 784

Query: 65   NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             L I      +  ++ ALIDMYSK   ++ A +VF  +Q   ++ WN MI G AI GL  
Sbjct: 785  CLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGK 844

Query: 125  DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
            +A ++F +M+   V PD+ITF  LL+AC + GL+ EG KYFD M + Y I P+LEHY  M
Sbjct: 845  EAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCM 904

Query: 185  VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---MG 241
            VDLLGRAG+++EA+ LI +M ++PD  +W ALL +CR  K L+  E A  N+ +L     
Sbjct: 905  VDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNS 964

Query: 242  GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
             +Y+L+ N+Y    RW+  +++RE+M   GVR  Q  SW+++   +H F + ++ HP+A 
Sbjct: 965  ANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAG 1024

Query: 302  AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
             I   L  L+   K  G++P    V  ++ E EK+  L  H+EKLA+ YG++K   G  I
Sbjct: 1025 KIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPI 1084

Query: 362  RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            R+ KN RIC DCHS  K IS +  R + +RD +RFH F  G CSC D+W
Sbjct: 1085 RVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1133



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 87/171 (50%), Gaps = 1/171 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGC-ARLGALNH 59
           MP+ + + WN  I   +++ +  + +  FR+M  S ++ +  T   V+    + LG LN 
Sbjct: 584 MPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISELGFLNM 643

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
               H  ++    + +  +  +LIDMY K   +  A+ VFD ++  ++  WN+++SG + 
Sbjct: 644 GKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSF 703

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS 170
            G+  DA  +  +ME   + PD +T+ G+++  +  G  +E   +F  M+ 
Sbjct: 704 KGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQ 754



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 5/140 (3%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY- 61
           +K + SWN MI GF       EA+  F EM    V PD  TF +++  C   G +   + 
Sbjct: 824 NKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWK 883

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIH 120
           +  ++I + +I         ++D+  + G +  A ++  T+  + D ++W A++    IH
Sbjct: 884 YFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIH 943

Query: 121 ---GLAADASAIFTKMEMFN 137
                A  A+    K+E  N
Sbjct: 944 KNLKFAETAAKNLFKLEPNN 963



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 105/257 (40%), Gaps = 47/257 (18%)

Query: 4   KDVVSWNSMIGGFVRNA-RFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++ + WNS +  F  +A      L  F+E+    V  D   ++  +  C R+  +     
Sbjct: 485 RNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGME 544

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWN-AMISGVAIHG 121
           +H  +I++  +L+  L  AL++ Y +C  ++ A +VF  +   +  +WN A+I  +    
Sbjct: 545 IHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEK 604

Query: 122 LAADASAIFTKME----------MFNVLPDSITFLGLLTAC--SHCGLVEEG-------- 161
           L      +F KM+          +  VL  SI+ LG L     +H  ++  G        
Sbjct: 605 LQKGVE-LFRKMQFSFLKAETATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVG 663

Query: 162 ----------------RKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
                           +  FD+M++R      +  + ++V      G  E+A  L+  M 
Sbjct: 664 TSLIDMYVKNHSLTSAQAVFDNMKNR-----NIFAWNSLVSGYSFKGMFEDALRLLNQME 718

Query: 206 ME---PDVVVWRALLSA 219
            E   PD+V W  ++S 
Sbjct: 719 KEGIKPDLVTWNGMISG 735


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 168/410 (40%), Positives = 249/410 (60%), Gaps = 4/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D V WNSM+  + +N   D  L    EM+ + + P + T  + I   A   AL     +
Sbjct: 240 RDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGREL 299

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H L   ++ E +  +  AL+DMY+KCG +++A+ +F+ +    V  WNAMI+G A+HG A
Sbjct: 300 HGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHA 359

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F +M      PD ITF+G+L+ACSH GL+EEG  +F+ M   Y I P ++HY  
Sbjct: 360 TEALDLFEEMNRV-AKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTC 418

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM--- 240
           MVDLLG +G ++EAY LI  M + PD  VW ALL++C+    +ELGE+A+  +  L    
Sbjct: 419 MVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDD 478

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G+YV+LSN+Y    +W+    +R++M  + ++KS   SW+E+   +H F +GD SHP +
Sbjct: 479 AGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLS 538

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
             I   L  +    K  G+ P+T  V  DV ++EK   +  HSE+LA+A+G++ T PGT 
Sbjct: 539 DEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTR 598

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + I+KNLRIC DCH  IK IS++  R I VRD  R+H F+ G+CSCGDYW
Sbjct: 599 LLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 648



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 114/219 (52%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  ++  WN +I G+  N  ++ A++ + +M    + PD FTF  V+  CA L A+ H 
Sbjct: 136 IPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHG 195

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++   E +  + AALIDMY+KCG +  A+EVFD +   D  +WN+M++  + +
Sbjct: 196 REIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQN 255

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G      ++ ++M +  + P   T +  ++A +    + +GR+    +  R   +   + 
Sbjct: 256 GHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRE-LHGLSWRQEFESHDKV 314

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A+VD+  + G +  A  L   + ++  VV W A+++ 
Sbjct: 315 KTALVDMYAKCGSVRVARNLFERLGVK-RVVSWNAMITG 352



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 95/186 (51%), Gaps = 2/186 (1%)

Query: 34  SSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQ 93
           S+ + P    +AS++  C    A+     +H  +       + +++  L+++Y  C  + 
Sbjct: 68  STCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLS 127

Query: 94  MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
            A+ +FD + ++++ +WN +I G A +G    A  ++ +M  + ++PD+ TF  +L AC+
Sbjct: 128 SARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACA 187

Query: 154 HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVW 213
               +E GR+  +H+  +   +  +    A++D+  + G +  A  +   + +  D V+W
Sbjct: 188 ALSAIEHGREIHEHV-VQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVR-DAVLW 245

Query: 214 RALLSA 219
            ++L+A
Sbjct: 246 NSMLAA 251


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 161/413 (38%), Positives = 255/413 (61%), Gaps = 4/413 (0%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            +P KD+VSWN+MIGG+ +N+  +EAL  F +M   + +PD  T A V+  CA L AL+  
Sbjct: 733  IPVKDIVSWNTMIGGYSQNSLPNEALELFLDM-QKQFKPDDITMACVLPACAGLAALDKG 791

Query: 61   YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              +H  I+ +    +  ++ AL+DMY+KCG + +A+ +FD + + D+  W  MI+G  +H
Sbjct: 792  REIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMH 851

Query: 121  GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            G   +A + F +M +  + PD  +F  +L ACSH GL+ EG K+F+ MR+   ++P+LEH
Sbjct: 852  GFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEH 911

Query: 181  YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
            Y  +VDLL R G++ +AY  I SM ++PD  +W  LLS CR    ++L E    +I  L 
Sbjct: 912  YACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELE 971

Query: 241  GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              +   YV+L+N+Y   ++W+  + +R+ M+K+G +++ G SW+E+ G  + F AG+  H
Sbjct: 972  PDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKH 1031

Query: 298  PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            P+A+ ID +L  L  + ++E +      VL++  + EKE     HSEK A+A+GIL   P
Sbjct: 1032 PQAKRIDVLLRKLTMQMQNEDYFSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPP 1091

Query: 358  GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  +R+SKN R+C DCH   K +S+  +R I++RD  RFH F+ GLCSC D +
Sbjct: 1092 GRTVRVSKNQRVCGDCHEMGKFMSKTTKREIVLRDSNRFHHFKDGLCSCRDAF 1144



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 115/219 (52%), Gaps = 3/219 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D  +VSW S I  +VR   + +A+  F EM S  V PD +T  S+++ CA   +L+  
Sbjct: 632 MGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKG 691

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ +I+  +  N  ++ ALI+MY+KCG ++ A+ VF  +   D+  WN MI G + +
Sbjct: 692 RDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQN 751

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            L  +A  +F  M+     PD IT   +L AC+    +++GR+   H+  R      L  
Sbjct: 752 SLPNEALELFLDMQK-QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFS-DLHV 809

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A+VD+  + G +  A  L+  M  + D++ W  +++ 
Sbjct: 810 ACALVDMYAKCGLLVLAQ-LLFDMIPKKDLISWTVMIAG 847



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 106/217 (48%), Gaps = 2/217 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + + DVVSWNSMI G V N      L  F +ML   VE D  T  SV+   A +G L+  
Sbjct: 531 LSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLG 590

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++       + S  L+DMYSKCG +  A EVF  +    +  W + I+     
Sbjct: 591 RALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVRE 650

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL +DA  +F +M+   V PD  T   ++ AC+    +++GR    ++  +  +   L  
Sbjct: 651 GLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYV-IKNGMGSNLPV 709

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             A++++  + G +EEA  L+ S     D+V W  ++
Sbjct: 710 TNALINMYAKCGSVEEAR-LVFSKIPVKDIVSWNTMI 745



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 103/219 (47%), Gaps = 3/219 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M DK V  WN ++  + +   F E++  F++M    V  + +TF  V+   A LG +   
Sbjct: 431 MNDK-VFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKEC 489

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +++     N  +  +LI  Y K G ++ A  +FD +   DV  WN+MI+G  ++
Sbjct: 490 KRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVN 549

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G + +   IF +M +  V  D  T + +L A ++ G +  GR        +     ++  
Sbjct: 550 GFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRA-LHGFGVKACFSEEVVF 608

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              ++D+  + G++  A  +   M  +  +V W + ++A
Sbjct: 609 SNTLLDMYSKCGNLNGATEVFVKMG-DTTIVSWTSTIAA 646



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 91/178 (51%), Gaps = 2/178 (1%)

Query: 43  TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV 102
           ++ SV+  CA   +L     VH++II   I ++  L A L+ MY  CG +   +++FD +
Sbjct: 371 SYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKI 430

Query: 103 QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR 162
             + V +WN ++S  A  G   ++ ++F KM+   V+ +  TF  +L   +  G V+E +
Sbjct: 431 MNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECK 490

Query: 163 KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
           +   ++  +           +++    + G +E A+ L   ++ EPDVV W ++++ C
Sbjct: 491 RVHGYVL-KLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELS-EPDVVSWNSMINGC 546


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 174/418 (41%), Positives = 253/418 (60%), Gaps = 23/418 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           M  K+V++WN+M+G ++++   ++ LR +  MLS K V PD  T+ ++  GCA LGA   
Sbjct: 463 MSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANK- 521

Query: 60  AYWVHNLIIEKKIELNFILSA----ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
              + + II + +++  IL      A+I MYSKCG+I  A++VFD +   D+  WNAMI+
Sbjct: 522 ---LGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMIT 578

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           G + HG+   A  IF  +      PD I+++ +L+ CSH GLV+EG+ YFD M+  ++I 
Sbjct: 579 GYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNIS 638

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVN 235
           P LEH+  MVDLLGRAGH+ EA  LI  M M+P   VW ALLSAC+     EL E+A  +
Sbjct: 639 PGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKH 698

Query: 236 ISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKA 292
           +  L     G Y+L++ +Y    + D +  +R++M+ KG++K+ G SW+E+   +H FKA
Sbjct: 699 VFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNNKVHVFKA 758

Query: 293 GDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGI 352
            D SHP+  AI K L  L+++    G+      V  D    E      HHSEKLA+A+G+
Sbjct: 759 DDVSHPQVIAIRKKLDELMEKIARLGY------VRTDSPRSE-----IHHSEKLAVAFGL 807

Query: 353 LKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           +       I I KNLRIC DCH+ IK+IS +  R  ++RD +RFH F GG CSCGDYW
Sbjct: 808 MSLPAWMPIHIMKNLRICGDCHTVIKLISSVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 112/220 (50%), Gaps = 4/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++DVVSWN M+    ++ R  EAL    +M S  V  D  T+ S +  CARL +L   
Sbjct: 230 MPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWG 289

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
             +H  +I     ++  +++AL+++Y+KCG  + AK VF+++  RN+V+ W  +I+G   
Sbjct: 290 KQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVA-WTVLIAGFLQ 348

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   ++  +F +M    +  D      L++ C     +  GR+          IQ  + 
Sbjct: 349 HGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVV 408

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              +++ +  +  +++ A  +   M  E D+V W ++++A
Sbjct: 409 S-NSLISMYAKCDNLQSAESIFRFMN-EKDIVSWTSMITA 446



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 117/252 (46%), Gaps = 36/252 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNH 59
           MP +DV SWN+++ G+ ++ ++  +L  F  M  S    P+ FTFA  +  C  LG  + 
Sbjct: 97  MPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSL 156

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAK----------------------- 96
           A  +  ++ +   + +  ++AAL+DM+ +CG + +A                        
Sbjct: 157 ALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVK 216

Query: 97  --------EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGL 148
                   E+FD++   DV  WN M+S ++  G   +A  +   M+   V  DS T+   
Sbjct: 217 TYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSS 276

Query: 149 LTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME 207
           LTAC+    +  G++     +R+   I P +    A+V+L  + G  +EA G+  S+  +
Sbjct: 277 LTACARLSSLRWGKQLHAQVIRNLPCIDPYVA--SALVELYAKCGCFKEAKGVFNSLH-D 333

Query: 208 PDVVVWRALLSA 219
            + V W  L++ 
Sbjct: 334 RNNVAWTVLIAG 345



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 4/179 (2%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D++ V+W  +I GF+++  F E++  F +M +  +  D+F  A++I GC     L     
Sbjct: 333 DRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQ 392

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+L ++       ++S +LI MY+KC  +Q A+ +F  +   D+  W +MI+  +  G 
Sbjct: 393 LHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGN 452

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
            A A   F  M   NV    IT+  +L A    G  E+G + ++ M S   ++P    Y
Sbjct: 453 IAKAREFFDGMSTKNV----ITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTY 507



 Score = 39.7 bits (91), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 73/177 (41%), Gaps = 6/177 (3%)

Query: 42  FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT 101
           F   ++++     GAL  A     L++      N I    +++ Y K G++  A E+F  
Sbjct: 40  FLQNTLLHAYLSCGALPDA---RRLLLTDIAHPNVITHNVMLNGYVKLGRLSDAVELFGR 96

Query: 102 VQRNDVSVWNAMISG-VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE 160
           +   DV+ WN ++SG        A   +  +     +  P++ TF   + +C   G    
Sbjct: 97  MPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSL 156

Query: 161 GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             +    M  ++  Q   +   A+VD+  R G ++ A  L   +  EP +    ++L
Sbjct: 157 ALQLLG-MVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIK-EPTIFCRNSML 211


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 163/409 (39%), Positives = 248/409 (60%), Gaps = 3/409 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D  +WN++IGG + N R +EA+  FR+M     +P++ T +S++  C+    L     +H
Sbjct: 279 DEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIH 338

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             +       +   + AL+ MY+KCG + +++ VFD ++R DV  WN MI   A+HG   
Sbjct: 339 CYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGK 398

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           +A  +F KM +  V P+S+TF G+L+ CSH  LVEEG + F+ M   + ++P   HY  +
Sbjct: 399 EALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCV 458

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMG 241
           VD+  RAG + EAY  I  M MEP    W ALL+ACR +K +EL +++   +  I     
Sbjct: 459 VDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNNP 518

Query: 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
           G+YV L N+    K W  A  VR +MK++G+ K+ G SWL++   +H F  GD+S+ E+ 
Sbjct: 519 GNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESD 578

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
            I   L  L+++ K  G+ P T+ VL D+ +EEK  +L +HSEKLA+A+GIL  +  + I
Sbjct: 579 KIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTI 638

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           R+ KNLRIC DCH+ IK +S+++  +I+VRD +RFH F+ G CSC D W
Sbjct: 639 RVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSCKDLW 687



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 125/316 (39%), Gaps = 82/316 (25%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +DVVSW S+   +V+     + +  FREM  S V+P+  T +S++  CA L  L     +
Sbjct: 142 RDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEI 201

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDV---------------- 107
           H   +   + +N  + +AL+ +Y+KC  ++ A+ VFD +   DV                
Sbjct: 202 HGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEY 261

Query: 108 -------------------SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGL 148
                              + WNA+I G   +G + +A  +F KM+     P+ IT   +
Sbjct: 262 EKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSI 321

Query: 149 LTACS-----------------------------------HCGLVEEGRKYFDHMRSRYS 173
           L ACS                                    CG +   R  FD MR +  
Sbjct: 322 LPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDV 381

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM---EPDVVVWRALLSACRTFKRLELGE 230
           +      +  M+      G+ +EA  L   M +   +P+ V +  +LS C   + +E G 
Sbjct: 382 VA-----WNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEG- 435

Query: 231 VAIVNISRLMGGDYVL 246
              V I   MG D+++
Sbjct: 436 ---VQIFNSMGRDHLV 448



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 101/238 (42%), Gaps = 2/238 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  D  + +++I     +   +EA++ +  +    ++PD   F +    CA  G     
Sbjct: 38  IPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALRV 97

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+      +  +  +  ALI  Y KC  ++ A+ VFD +   DV  W ++ S     
Sbjct: 98  KEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKC 157

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G       +F +M    V P+ +T   +L AC+    ++ G++       R+ +   L  
Sbjct: 158 GFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKE-IHGFAVRHGMVVNLFV 216

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
             A+V L  +   + EA  ++  +    DVV W  +L+A    K  E G    + +SR
Sbjct: 217 CSALVSLYAKCLSVREAR-MVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSR 273



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 3/143 (2%)

Query: 78  LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFN 137
           L   LI +    G    A+++FD + + D +  + +IS +  HGL+ +A  I++ ++   
Sbjct: 14  LGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERG 73

Query: 138 VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEA 197
           + PD   FL    AC+  G     ++  D   +R  +   +    A++   G+   +E A
Sbjct: 74  IKPDMPVFLAAAKACAVSGDALRVKEVHDDA-TRCGVMSDVFVGNALIHAYGKCKCVEGA 132

Query: 198 YGLITSMTMEPDVVVWRALLSAC 220
             +   + +  DVV W + LS+C
Sbjct: 133 RRVFDDLVVR-DVVSWTS-LSSC 153


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 169/412 (41%), Positives = 249/412 (60%), Gaps = 4/412 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D++VV+W +++  +++N  F+E L  F +M      P++FTFA ++  CA L AL +   
Sbjct: 292 DRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDL 351

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H  I+    + + I+  ALI+MYSK G I  +  VF  +   DV  WNAMI G + HGL
Sbjct: 352 LHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGL 411

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
              A  +F  M      P+ +TF+G+L+AC H  LV+EG  YFD +  ++ ++P LEHY 
Sbjct: 412 GKQALLVFQDMMSAGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGLEHYT 471

Query: 183 AMVDLLGRAGHIEEAYGLI-TSMTMEPDVVVWRALLSACRTFKRLELGEV---AIVNISR 238
            MV LLGRAG ++EA   + T+  ++ DVV WR LL+AC   +   LG+     ++ +  
Sbjct: 472 CMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLLNACHIHRNYNLGKQITETVIQMDP 531

Query: 239 LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
              G Y LLSNM+   ++WD    +R++MK++ ++K  G SWL++    H F +   +HP
Sbjct: 532 HDVGTYTLLSNMHAKARKWDGVVKIRKLMKERNIKKEPGASWLDIRNNTHVFVSEGSNHP 591

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           E+  I + +  L+   K  G+ P   +VL DV +E+KEG L HHSEKLALAYG++K  P 
Sbjct: 592 ESTQIFEKVQQLLAMIKPLGYAPDVGVVLHDVEDEQKEGYLSHHSEKLALAYGLMKIPPP 651

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             IRI KNLR+C DCH  +K+IS+   R+IIVRD  RFH F  GLC+C D+W
Sbjct: 652 GPIRIIKNLRMCDDCHIAVKLISKATNRLIIVRDANRFHHFREGLCTCNDHW 703



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 125/245 (51%), Gaps = 11/245 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  DV S+NS++   V +    EA +  + M+   V  D  T+ SV+  CA++  L   
Sbjct: 189 VPGDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLG 248

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++  +  +  +S+ LID Y KCG++  A++ FD ++  +V  W A+++    +
Sbjct: 249 LQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQN 308

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +   +FTKME+ +  P+  TF  LL AC+   LV     Y D +  R  +     H
Sbjct: 309 GHFEETLNLFTKMELEDTRPNEFTFAVLLNACA--SLV--ALAYGDLLHGRIVMSGFKNH 364

Query: 181 Y---GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
                A++++  ++G+I+ +Y + ++M M  DV+ W A++     +    LG+ A++   
Sbjct: 365 LIVGNALINMYSKSGNIDSSYNVFSNM-MNRDVITWNAMICG---YSHHGLGKQALLVFQ 420

Query: 238 RLMGG 242
            +M  
Sbjct: 421 DMMSA 425



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 141/317 (44%), Gaps = 52/317 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           M  ++VVSW++++ G++      E L  FR ++S     P+++ F  V+  CA  G +  
Sbjct: 87  MLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVKE 146

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
               H  +++  + L+  +  ALI MYS+C  +  A ++ DTV  +DV  +N+++S +  
Sbjct: 147 GKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALVE 206

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH------------------------- 154
            G   +A+ +  +M    V+ DS+T++ +L  C+                          
Sbjct: 207 SGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFV 266

Query: 155 ----------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
                     CG V   RK FD +R R  +      + A++    + GH EE   L T M
Sbjct: 267 SSTLIDTYGKCGEVLNARKQFDGLRDRNVVA-----WTAVLTAYLQNGHFEETLNLFTKM 321

Query: 205 TME---PDVVVWRALLSACRTFKRLELGEVAIVNI------SRLMGGDYVLLSNMYCYLK 255
            +E   P+   +  LL+AC +   L  G++    I      + L+ G+ ++  NMY    
Sbjct: 322 ELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALI--NMYSKSG 379

Query: 256 RWDTAENVREIMKKKGV 272
             D++ NV   M  + V
Sbjct: 380 NIDSSYNVFSNMMNRDV 396



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 85/168 (50%), Gaps = 5/168 (2%)

Query: 53  RLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA 112
           R G   HA  V      K  ++  I S  LI++YSKCG+ + A+++FD + + +V  W+A
Sbjct: 40  RFGKTIHAQLVVRNQTSKDSDITQINS--LINLYSKCGQSKCARKLFDRMLQRNVVSWSA 97

Query: 113 MISGVAIHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR 171
           ++ G    G   +   +F  +  + +  P+   F  +L+ C+  G V+EG++   ++   
Sbjct: 98  LMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKS 157

Query: 172 YSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +  Q     A++ +  R  H++ A  ++ ++  + DV  + ++LSA
Sbjct: 158 GLLLHQYVK-NALIHMYSRCFHVDSAMQILDTVPGD-DVFSYNSILSA 203



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++DV++WN+MI G+  +    +AL  F++M+S+   P+  TF  V+  C  L  +   
Sbjct: 391 MMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLALVQEG 450

Query: 61  YWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN--DVSVWNAMISGV 117
           ++  + I++K  +E        ++ +  + G +  A+    T  +   DV  W  +++  
Sbjct: 451 FYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLLNAC 510

Query: 118 AIH 120
            IH
Sbjct: 511 HIH 513


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 167/413 (40%), Positives = 242/413 (58%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K++++W  MI G  +N   ++AL+ F +M     EP+ + FA  I  C+ LGAL + 
Sbjct: 385 MPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENG 444

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I+    +    +  A+I MY++CG ++ A+ +F T+   D   WN+MI+ +  H
Sbjct: 445 RQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQH 504

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  ++ +M    +LPD  TFL +L+ACSH GLVEEG +YF+ M   Y I P  +H
Sbjct: 505 GHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDH 564

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  M+DL  RAG   +A  +I SM  E    +W ALL+ CRT   ++LG  A   + +L+
Sbjct: 565 YARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLI 624

Query: 241 ---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSNMY  L RW+     R++M+ +GV+K    SW E+   +H F   D  H
Sbjct: 625 PQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDDTVH 684

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE  +I   L  L    K  G++P T+ VL D+  E KE  L  HSEKLA+A+G++K   
Sbjct: 685 PEVLSIYNYLEKLNLEMKKIGYIPDTKYVLHDMESEHKEYALSTHSEKLAVAFGLMKLPQ 744

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  +R+ KNLRIC DCH+ IK +S+++ R I+VRD  RFH F+ G CSC +YW
Sbjct: 745 GATVRVFKNLRICGDCHNAIKFMSKVVGREIVVRDGKRFHHFKNGECSCRNYW 797



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 121/266 (45%), Gaps = 61/266 (22%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCAR-----LG 55
           M ++  ++WN+MI G++ +  F++AL  FR+M    V+ D+ T+ SVI  CA      LG
Sbjct: 249 MTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLG 308

Query: 56  ALNHAYWVHNLIIEKKIELNFILSAA--LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA- 112
              HAY + N   E   + +F+LS    LI +Y K GK+  A+++F  +   D+  WN  
Sbjct: 309 KQVHAYILKN---ELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTL 365

Query: 113 ------------------------------MISGVAIHGLAADASAIFTKMEMFNVLPDS 142
                                         MISG+A +G    A  +F +M++    P+ 
Sbjct: 366 LSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPND 425

Query: 143 ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG---------AMVDLLGRAGH 193
             F G +TACS  G +E GR+          +  Q+ H G         AM+ +  R G 
Sbjct: 426 YAFAGAITACSVLGALENGRQ----------LHAQIVHLGHDSTLSVGNAMITMYARCGI 475

Query: 194 IEEAYGLITSMTMEPDVVVWRALLSA 219
           +E A  +  +M    D V W ++++A
Sbjct: 476 VEAARTMFLTMPF-VDPVSWNSMIAA 500



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 113/275 (41%), Gaps = 59/275 (21%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVI-------YGCARLGA 56
           +D V +N+MI G+        A+  FR M  +  +PD FTFASV+       Y   + G 
Sbjct: 110 RDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQ 169

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKC--------------------------- 89
           +      H  +++  IE+   +  AL+ +Y KC                           
Sbjct: 170 M------HGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNE 223

Query: 90  -------------GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMF 136
                        G +  A+E+ DT+       WNAMISG   HGL  DA  +F KM + 
Sbjct: 224 FIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLL 283

Query: 137 NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ----LEHYGAMVDLLGRAG 192
            V  D  T+  +++AC+  G    G++   ++  +  + P     L     ++ L  + G
Sbjct: 284 GVQVDESTYTSVISACADGGFFLLGKQVHAYIL-KNELNPDRDFLLSVGNTLITLYWKYG 342

Query: 193 HIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
            ++ A  +   M ++ D++ W  LLS      R+E
Sbjct: 343 KVDGARKIFYEMPVK-DIITWNTLLSGYVNAGRME 376



 Score = 38.5 bits (88), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 4/141 (2%)

Query: 30  REMLSSKVEPDKFTFASVIYGCAR-LGALNHAYWVHNLIIEKKIELNFILSAALIDMYSK 88
           R +L  +V  +++ FA +   C + L + + A  VH  +I    +L   +   LID+Y K
Sbjct: 2   RNVLDVRVLANRY-FAQLNLCCPQNLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWK 60

Query: 89  CGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGL 148
                 A+++FD + + DV     +I+  +  G    A  IF +  +   + D++ +  +
Sbjct: 61  SSDFVYARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPL--DMRDTVFYNAM 118

Query: 149 LTACSHCGLVEEGRKYFDHMR 169
           +T  SH        + F  MR
Sbjct: 119 ITGYSHMNDGHSAIELFRAMR 139


>gi|222630733|gb|EEE62865.1| hypothetical protein OsJ_17668 [Oryza sativa Japonica Group]
          Length = 620

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 171/420 (40%), Positives = 251/420 (59%), Gaps = 16/420 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM------LSSKVEPDKFTFASVIYGCARL 54
           M  +DV +WNS++ G  +    + AL  F  +      L S+ EP++ T  + +  CA++
Sbjct: 1   MTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSACAQI 60

Query: 55  GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV--WNA 112
           G L    +VH       ++ N  +  +LIDMYSKCG +  A +VF +++  D ++  +NA
Sbjct: 61  GLLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQTLVSYNA 120

Query: 113 MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY 172
            I   ++HG   DA  +F +M    + PD +T+L +L  C+H GLV++G + F+ MR   
Sbjct: 121 AIQAHSMHGHGGDALRLFDEMPT-RIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMR--- 176

Query: 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA 232
            + P ++HYG +VDLLGRAG + EAY  + SM    D+V+W+ LL A +    +EL E+A
Sbjct: 177 -VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELA 235

Query: 233 IVNISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQ 289
              ++ L   + GDYVLLSN+Y    RW     VR+ M+   VRK  G S+ E+ GV+H+
Sbjct: 236 ANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHK 295

Query: 290 FKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALA 349
           F  GD+ HP  Q I + L  ++ R    G+ P T  VL D+ EEEK+  L +HSEKLA+A
Sbjct: 296 FINGDKEHPRWQEIYRALEDIVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEKLAIA 355

Query: 350 YGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDY 409
           +G++ T PG  +R+ KNLRIC DCH   K+IS+   RVI++RDR RFHRFE G CSC DY
Sbjct: 356 FGLIATPPGETLRVIKNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRDY 415


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 166/412 (40%), Positives = 243/412 (58%), Gaps = 3/412 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M DKD+VSW +MI     + R  E    FR+++ S V P+++TFA V+  CA L A    
Sbjct: 257 MADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMG 316

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +     +     ++AL+ +YSKCG  + A+ VF+ + R D+  W ++I G A +
Sbjct: 317 KEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQN 376

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A   F  +      PD ITF+G+L+AC+H GLV+ G +YF  ++ ++ +    +H
Sbjct: 377 GQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADH 436

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE---VAIVNIS 237
           Y  ++DLL R+G  +EA  +I +M M+PD  +W +LL  CR    +EL E    A+  + 
Sbjct: 437 YACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELE 496

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 Y+ LSN+Y     W     VR  M  +G+ K  GKSW+E+   +H F  GD SH
Sbjct: 497 PENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKRQVHVFLVGDTSH 556

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+   I + LG L ++ K EG++  T  VL DV EE+KE N+++HSEKLA+A+GI+ TSP
Sbjct: 557 PKISDIHEYLGELSKKMKEEGYVADTNFVLHDVEEEQKEQNIFYHSEKLAVAFGIISTSP 616

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDY 409
           GT I++ KNLR C DCH+ +K IS++++R IIVRD  RFH F  G CSC DY
Sbjct: 617 GTPIKVFKNLRTCVDCHNAMKYISKIVQRKIIVRDSNRFHCFVDGSCSCKDY 668



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 108/218 (49%), Gaps = 3/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEP-DKFTFASVIYGCARLGALNH 59
           MP +D  SWN++I G+V    + EAL  FR M  ++    + FT +S +   A + +L  
Sbjct: 155 MPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRR 214

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  +I   +EL+ ++  AL+D+Y KCG +  A+ +FD +   D+  W  MI     
Sbjct: 215 GKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFE 274

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            G   +  ++F  +    V P+  TF G+L AC+     + G++   +M +R    P   
Sbjct: 275 DGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYM-TRVGYDPFSF 333

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              A+V +  + G+ E A  +   M   PD+V W +L+
Sbjct: 334 AASALVHVYSKCGNTETARRVFNQMP-RPDLVSWTSLI 370



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 94/240 (39%), Gaps = 44/240 (18%)

Query: 16  FVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELN 75
           F +  R  EA+ +   +     +P    ++++I  C R   L     VH           
Sbjct: 42  FCQQNRLKEAVDYLHRI----PQPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPG 97

Query: 76  FILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEM 135
            ++S  LI MY+KCG +  A+ +FD + + D+  WN MISG A  G    A  +F +M  
Sbjct: 98  IVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPH 157

Query: 136 FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR------------------------ 171
                D+ ++  +++     G   E    F  M+                          
Sbjct: 158 ----RDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLR 213

Query: 172 -------YSIQPQLEH----YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
                  Y I+  LE     + A++DL G+ G + EA G+   M  + D+V W  ++  C
Sbjct: 214 RGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMA-DKDIVSWTTMIHRC 272


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 171/414 (41%), Positives = 248/414 (59%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           + ++D   W  +IGG+ +       L  +REM  ++KV   K  ++ VI  CA LGA   
Sbjct: 383 IENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFAD 442

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
           A   H+ I    +  +F+L+ +L++MYS+ G ++ A++VFD +   D   W  +I+G A 
Sbjct: 443 ARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAK 502

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG    A  ++ +ME+    P  +TF+ +L ACSH GL E+G++ F  ++S Y++ P + 
Sbjct: 503 HGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIA 562

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY  ++DLL RAG + +A  LI +M +EP+ V W +LL A R  K ++    A   I++L
Sbjct: 563 HYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKL 622

Query: 240 MGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
              D   YVLLSN++          +VR  M  +GV+K +G SW+E+A  IH+F  GD S
Sbjct: 623 DPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNS 682

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP  Q I   L  L  + K  G++P +E VL DV E+EKE  L  HSEKLA+A+G++ T+
Sbjct: 683 HPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATA 742

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PGT +RI   LRICHDCHS +K IS + RR IIVRD  RFH+F  G CSCGDYW
Sbjct: 743 PGTTLRIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 796



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 143/309 (46%), Gaps = 42/309 (13%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           + V SWN+MI  + ++  F+EA+R + +M    VEP   TF SV+  C+ LG L+    +
Sbjct: 187 RSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKI 243

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H LI  +  EL+  L  AL+ MY++C  +  A ++F  + R DV  W+AMI+  A   L 
Sbjct: 244 HALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLF 303

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYG 182
            +A   ++KM++  V P+  TF  +L AC+  G +  GR   D  + + Y I   L +  
Sbjct: 304 DEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKI--TLVNGT 361

Query: 183 AMVDLLGRAGHIEEAYGL----------------------------------ITSMTMEP 208
           A+VDL    G ++EA  L                                  + + T  P
Sbjct: 362 ALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVP 421

Query: 209 DV-VVWRALLSACRTFKRLELGEVAIVNI-SRLMGGDYVLLSNMYCYLKRWDTAENVREI 266
              +++  ++SAC +         A  +I +  M  D+VL +++     RW   E+ R++
Sbjct: 422 ATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQV 481

Query: 267 MKKKGVRKS 275
             K   R +
Sbjct: 482 FDKMSSRDT 490



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 113/224 (50%), Gaps = 13/224 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P +DVVSW++MI  F     FDEA+ F+ +M    V P+ +TFASV+  CA +G L   
Sbjct: 282 LPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAG 341

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ I+    ++  +   AL+D+Y+  G +  A+ +FD ++  D  +W  +I G +  
Sbjct: 342 RAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQ 401

Query: 121 GLAADASAIFTKMEMFNVLPDS-ITFLGLLTACSHCGLVEEGRKYF-----DHMRSRYSI 174
           G       ++ +M+    +P + I +  +++AC+  G   + R+       D M S + +
Sbjct: 402 GHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVL 461

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
              L      V++  R G++E A  +   M+   D + W  L++
Sbjct: 462 ATSL------VNMYSRWGNLESARQVFDKMSSR-DTLAWTTLIA 498



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 127/238 (53%), Gaps = 13/238 (5%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K+  SW SM+  + +N  +  AL  ++ M    ++P+   + +V+  CA + AL     +
Sbjct: 87  KNDYSWGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIEALEEGKAI 143

Query: 64  HNLII-EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIHG 121
           H+ I   K ++L+ IL  +L+ MY+KCG ++ AK +F+ +  R  VS WNAMI+  A  G
Sbjct: 144 HSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSG 203

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              +A  ++  M   +V P   TF  +L+ACS+ GL+++GRK    + SR   +  L   
Sbjct: 204 HFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSR-GTELDLSLQ 259

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
            A++ +  R   +++A  +   +    DVV W A+++A   F   +L + AI   S++
Sbjct: 260 NALLTMYARCKCLDDAAKIFQRLPRR-DVVSWSAMIAA---FAETDLFDEAIEFYSKM 313



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 99/238 (41%), Gaps = 47/238 (19%)

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           N  L   ++  Y KCG +  A+  FD + R +   W +M++  A +G    A  ++ +M+
Sbjct: 57  NVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMD 116

Query: 135 MFNVLPDSITFLGLLTACS------------------------------------HCGLV 158
           +    P+ + +  +L AC+                                     CG +
Sbjct: 117 L---QPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSL 173

Query: 159 EEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
           E+ ++ F+ M  R S+      + AM+    ++GH EEA  L   M +EP V  + ++LS
Sbjct: 174 EDAKRLFERMSGRRSVSS----WNAMIAAYAQSGHFEEAIRLYEDMDVEPSVRTFTSVLS 229

Query: 219 ACRTFKRLELG-EVAIVNISRLMGGDYVL---LSNMYCYLKRWDTAENVREIMKKKGV 272
           AC     L+ G ++  +  SR    D  L   L  MY   K  D A  + + + ++ V
Sbjct: 230 ACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDV 287


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 171/414 (41%), Positives = 248/414 (59%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           + ++D   W  +IGG+ +       L  +REM  ++KV   K  ++ VI  CA LGA   
Sbjct: 382 IENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFAD 441

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
           A   H+ I    +  +F+L+ +L++MYS+ G ++ A++VFD +   D   W  +I+G A 
Sbjct: 442 ARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAK 501

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG    A  ++ +ME+    P  +TF+ +L ACSH GL E+G++ F  ++S Y++ P + 
Sbjct: 502 HGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIA 561

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY  ++DLL RAG + +A  LI +M +EP+ V W +LL A R  K ++    A   I++L
Sbjct: 562 HYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKL 621

Query: 240 MGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
              D   YVLLSN++          +VR  M  +GV+K +G SW+E+A  IH+F  GD S
Sbjct: 622 DPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNS 681

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP  Q I   L  L  + K  G++P +E VL DV E+EKE  L  HSEKLA+A+G++ T+
Sbjct: 682 HPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATA 741

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PGT +RI   LRICHDCHS +K IS + RR IIVRD  RFH+F  G CSCGDYW
Sbjct: 742 PGTTLRIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 795



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 144/312 (46%), Gaps = 42/312 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  + V SWN+MI  + ++  F+EA+R + +M    VEP   TF SV+  C+ LG L+  
Sbjct: 183 MSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQG 239

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H LI  +  EL+  L  AL+ MY++C  +  A ++F  + R DV  W+AMI+  A  
Sbjct: 240 RKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAET 299

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
            L  +A   ++KM++  V P+  TF  +L AC+  G +  GR   D  + + Y I   L 
Sbjct: 300 DLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKI--TLV 357

Query: 180 HYGAMVDLLGRAGHIEEAYGL----------------------------------ITSMT 205
           +  A+VDL    G ++EA  L                                  + + T
Sbjct: 358 NGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTT 417

Query: 206 MEPDV-VVWRALLSACRTFKRLELGEVAIVNI-SRLMGGDYVLLSNMYCYLKRWDTAENV 263
             P   +++  ++SAC +         A  +I +  M  D+VL +++     RW   E+ 
Sbjct: 418 KVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESA 477

Query: 264 REIMKKKGVRKS 275
           R++  K   R +
Sbjct: 478 RQVFDKMSSRDT 489



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 113/224 (50%), Gaps = 13/224 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P +DVVSW++MI  F     FDEA+ F+ +M    V P+ +TFASV+  CA +G L   
Sbjct: 281 LPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAG 340

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ I+    ++  +   AL+D+Y+  G +  A+ +FD ++  D  +W  +I G +  
Sbjct: 341 RAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQ 400

Query: 121 GLAADASAIFTKMEMFNVLPDS-ITFLGLLTACSHCGLVEEGRKYF-----DHMRSRYSI 174
           G       ++ +M+    +P + I +  +++AC+  G   + R+       D M S + +
Sbjct: 401 GHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVL 460

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
              L      V++  R G++E A  +   M+   D + W  L++
Sbjct: 461 ATSL------VNMYSRWGNLESARQVFDKMSSR-DTLAWTTLIA 497



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 126/237 (53%), Gaps = 12/237 (5%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K+  SW SM+  + +N  +  AL  ++ M    ++P+   + +V+  CA + AL     +
Sbjct: 87  KNDYSWGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIKALEEGKAI 143

Query: 64  HNLII-EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           H+ I   K ++L+ IL  +L+ MY+KCG ++ AK +F+ +    VS WNAMI+  A  G 
Sbjct: 144 HSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGH 203

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  ++  M   +V P   TF  +L+ACS+ GL+++GRK    + SR   +  L    
Sbjct: 204 FEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSR-GTELDLSLQN 259

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           A++ +  R   +++A  +   +    DVV W A+++A   F   +L + AI   S++
Sbjct: 260 ALLTMYARCKCLDDAAKIFQRLPRR-DVVSWSAMIAA---FAETDLFDEAIEFYSKM 312



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 98/238 (41%), Gaps = 48/238 (20%)

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           N  L   ++  Y KCG +  A+  FD + R +   W +M++  A +G    A  ++ +M+
Sbjct: 57  NVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMD 116

Query: 135 MFNVLPDSITFLGLLTAC------------------------------------SHCGLV 158
           +    P+ + +  +L AC                                    + CG +
Sbjct: 117 L---QPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSL 173

Query: 159 EEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
           E+ ++ F+ M  R      +  + AM+    ++GH EEA  L   M +EP V  + ++LS
Sbjct: 174 EDAKRLFERMSGR-----SVSSWNAMIAAYAQSGHFEEAIRLYEDMDVEPSVRTFTSVLS 228

Query: 219 ACRTFKRLELG-EVAIVNISRLMGGDYVL---LSNMYCYLKRWDTAENVREIMKKKGV 272
           AC     L+ G ++  +  SR    D  L   L  MY   K  D A  + + + ++ V
Sbjct: 229 ACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDV 286


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 166/414 (40%), Positives = 253/414 (61%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           +P+ DV+SWN++I G+ +N    EA+  +  M    ++  ++ T+ SV+  C++ GAL  
Sbjct: 410 LPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQ 469

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  +++  + L+  +  +L DMY KCG+++ A  +F  + R +   WN +I+    
Sbjct: 470 GMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGF 529

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG    A  +F +M    V PD ITF+ LL+ACSH GLV+EG+  F+ M++ Y I P L+
Sbjct: 530 HGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLK 589

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HYG MVD+ GRAG +E A   I SM+++PD  +W ALLSACR    ++LG++A   +  +
Sbjct: 590 HYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEV 649

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G +VLLSNMY    +W+  + +R I   KG+RK+ G S +E+   +  F  G+++
Sbjct: 650 EPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQT 709

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP  + + + L +L  + K  G++P    VL DV ++EKE  L  HSE+LA+A+ ++ T 
Sbjct: 710 HPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATP 769

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             T IRI KNLR+C DCHS  K IS++  R IIVRD  RFH F+ G+CSCGDYW
Sbjct: 770 AKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 113/222 (50%), Gaps = 5/222 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D++SWNS+I  +  N +   A+  F+EM  S+++PD  T  S+    ++LG +     V
Sbjct: 311 RDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSV 370

Query: 64  HNLIIEKKIEL-NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
               + K   L +  +  A++ MY+K G +  A+ VF+ +   DV  WN +ISG A +G 
Sbjct: 371 QGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGF 430

Query: 123 AADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
           A++A  ++  M E   +  +  T++ +L ACS  G + +G K    +  +  +   +   
Sbjct: 431 ASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLL-KNGLYLDVFVV 489

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTF 223
            ++ D+ G+ G +E+A  L   +    + V W  L+ AC  F
Sbjct: 490 TSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLI-ACHGF 529



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 10/220 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFRE-MLSSKVEPDKFTFASVIYGCARLGALNH 59
           + ++DV +WN MI G+ R     E +R F   MLSS + PD  TF SV+  C  +   N 
Sbjct: 112 IQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNK 171

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H L ++     +  ++A+LI +YS+   +  A+ +FD +   D+  WNAMISG   
Sbjct: 172 ---IHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQ 228

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            G A +A  +   +       DS+T + LL+AC+  G    G     +   ++ ++ +L 
Sbjct: 229 SGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSY-SIKHGLESELF 283

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               ++DL    G + +   +   M +  D++ W +++ A
Sbjct: 284 VSNKLIDLYAEFGRLRDCQKVFDRMYVR-DLISWNSIIKA 322



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 104/220 (47%), Gaps = 7/220 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEP-DKFTFASVIYGCARLGALNH 59
           MP +D+ SWN+MI G+ ++    EAL      LS+ +   D  T  S++  C   G  N 
Sbjct: 211 MPVRDMGSWNAMISGYCQSGNAKEAL-----TLSNGLRAMDSVTVVSLLSACTEAGDFNR 265

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H+  I+  +E    +S  LID+Y++ G+++  ++VFD +   D+  WN++I    +
Sbjct: 266 GVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYEL 325

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +     A ++F +M +  + PD +T + L +  S  G +   R        +      + 
Sbjct: 326 NEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDIT 385

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A+V +  + G ++ A  +   +    DV+ W  ++S 
Sbjct: 386 IGNAVVVMYAKLGLVDSARAVFNWLP-NTDVISWNTIISG 424



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 36/186 (19%)

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
           L++ K+I+ N  +SA L+++Y   G + +A+  FD +Q  DV  WN MISG   +G A +
Sbjct: 77  LVVSKQIQ-NVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISG---YGRAGN 132

Query: 126 ASAIFTKMEMF----NVLPDSITFLGLLTACS--------HCGLVEEGRKY-------FD 166
           +S +     +F     + PD  TF  +L AC         HC  ++ G  +         
Sbjct: 133 SSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLI 192

Query: 167 HMRSRYSI----------QP--QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
           H+ SRY             P   +  + AM+    ++G+ +EA  L   +     V V  
Sbjct: 193 HLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTV-V 251

Query: 215 ALLSAC 220
           +LLSAC
Sbjct: 252 SLLSAC 257


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 170/414 (41%), Positives = 255/414 (61%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  K+VVSWN++I G+       +AL  FRE L ++V   + TF+S +  CA L ++   
Sbjct: 409 LSSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLASMELG 468

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH L I+        +S +LIDMY+KCG I++A+ VF+ ++  DV+ WNA+ISG + H
Sbjct: 469 VQVHGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTH 528

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL   A  IF  M+  +  P+ +TFLG+L+ CS+ GL+++G+  F+ M   + I+P LEH
Sbjct: 529 GLGRQALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEH 588

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MV L GR+G +++A  LI  +  EP V++WRA+LSA       E    +   I ++ 
Sbjct: 589 YTCMVRLFGRSGQLDKAMNLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSAEEILKIN 648

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D   YVLLSNMY   K+W    ++R+ MK+KGV+K  G SW+E  G +H F  G   H
Sbjct: 649 PKDEATYVLLSNMYAGAKQWANVASIRKSMKEKGVKKEPGLSWIEHQGDVHFFSVGSSDH 708

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK-TS 356
           P+ + I+ +L  L  +    G++P    VL+D+ +EEK+  L+ HSE+LALAYG+++  S
Sbjct: 709 PDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPS 768

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
               I I KNLRIC DCHS +K+IS +++R +++RD  RFH F  G+CSC D+W
Sbjct: 769 SRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCDDHW 822



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 107/222 (48%), Gaps = 2/222 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP  DVV W+ MI  F +N   ++A+  F  M    V P++FT +S++ GCA        
Sbjct: 308 MPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLG 367

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L+++   +L+  +S ALID+Y+KC K+  A ++F  +   +V  WN +I G    
Sbjct: 368 EQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENL 427

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +     V    +TF   L AC+    +E G +    +  + +   ++  
Sbjct: 428 GEGGKALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQVHG-LAIKTNNAKRVAV 486

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRT 222
             +++D+  + G I+ A  +   M    DV  W AL+S   T
Sbjct: 487 SNSLIDMYAKCGDIKVAQTVFNEME-TIDVASWNALISGYST 527



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 103/217 (47%), Gaps = 8/217 (3%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD+V W  ++  +V N  F+++L+    M      P+ +TF + +     LGA + A  V
Sbjct: 210 KDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSV 269

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  I++   EL+  +   L+ +Y++ G +  A +VF+ + +NDV  W+ MI+    +G  
Sbjct: 270 HGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFC 329

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACS--HC-GLVEEGRKYFDHMRSRYSIQPQLEH 180
             A  IF +M    V+P+  T   +L  C+   C GL E+       +  +      +  
Sbjct: 330 NKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLGEQ----LHGLVVKVGFDLDVYV 385

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             A++D+  +   ++ A  L   ++   +VV W  ++
Sbjct: 386 SNALIDVYAKCEKMDTAVKLFAELS-SKNVVSWNTVI 421



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 103/219 (47%), Gaps = 8/219 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++ VS+ ++  G+          R  RE    ++ P  FT  S +     L      
Sbjct: 110 MPERNNVSYVTLTQGYACQDPVGLYSRLHRE--GHELNPHVFT--SFLKLFVSLDKAEIC 165

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           +W+H+ I++   + N  + AALI+ YS CG +  A+ VF+ +   D+ VW  ++S    +
Sbjct: 166 WWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVEN 225

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
           G   D+  + ++M M   +P++ TF   L A    G     +      +++ Y + P++ 
Sbjct: 226 GCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVG 285

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
               ++ L  + G + +A+ +   M  + DVV W  +++
Sbjct: 286 V--GLLQLYTQLGDMSDAFKVFNEMP-KNDVVPWSFMIA 321


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  335 bits (858), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 168/415 (40%), Positives = 258/415 (62%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML--SSKVEPDKFTFASVIYGCARLGALN 58
           MP K+VVSW++MI  + +N +  EAL  FRE++  +  + P+  T  SV+  CA L AL 
Sbjct: 236 MPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALE 295

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H  I+ K ++    + +AL+ MY++CGK+++ + VFD + + DV  WN++IS   
Sbjct: 296 QGRLIHGYILRKGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYG 355

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG    A  IF +M    V P  I+F+ +L ACSH GLV+EG+  F+ M   + I P +
Sbjct: 356 VHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSV 415

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVN 235
           EHY  MVDLLGRA  +EEA  +I +M +EP   VW +LL +CR    +EL E A   + +
Sbjct: 416 EHYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGSCRIHCNVELAERASIRLFD 475

Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           +     G+YVLL+++Y     WD  + V+++++ +G++K  G+SW+E+   I+ F + D 
Sbjct: 476 LEPTNAGNYVLLADIYAEAGMWDGVKRVKKLLEARGLQKVPGRSWIEVKRKIYSFVSVDE 535

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
            +P  + +  +L  L    K EG++P T++VL D+   EKE  +  HSEKLA+A+G++ +
Sbjct: 536 VNPRMEQLHALLVKLSMELKEEGYVPQTKVVLYDLKAAEKERIVLGHSEKLAVAFGLINS 595

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           S G  IRI+K+LR+C DCHS+ K IS+   + I+VRD  RFH F  G+CSCGDYW
Sbjct: 596 SKGEVIRITKSLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRDGVCSCGDYW 650



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 109/236 (46%), Gaps = 16/236 (6%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P       N +I    +     +AL    E+LS +  P + T+  +I  C    +L  A 
Sbjct: 35  PTASTADNNKLIQSLCKQGNLTQAL----ELLSLEPNPAQHTYELLILSCTHQNSLLDAQ 90

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            VH  ++E   + +  L+  LI+MYS    I  A++VFD  +   + V+NA+   +++ G
Sbjct: 91  RVHRHLLENGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAG 150

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTAC--SHC--GLVEEGRKYFDHMRSRYSIQPQ 177
              +   ++ +M    +  D  T+  +L AC  S C   L+ +GR+   H+  R+     
Sbjct: 151 HGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHIL-RHGYDGY 209

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC-----RTFKRLEL 228
           +     +VD+  + G +  A  +   M ++ +VV W A++ AC     + F+ LEL
Sbjct: 210 VHIMTTLVDMYAKFGCVSNASCVFNQMPVK-NVVSWSAMI-ACYAKNGKAFEALEL 263



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 107/223 (47%), Gaps = 8/223 (3%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCAR----LGALN 58
           ++ +  +N++          +E L  +R M S  +  D+FT+  V+  C      +  LN
Sbjct: 133 NRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLN 192

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H  I+    +    +   L+DMY+K G +  A  VF+ +   +V  W+AMI+  A
Sbjct: 193 KGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYA 252

Query: 119 IHGLAADASAIFTK--MEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
            +G A +A  +F +  +E  ++ P+S+T + +L AC+    +E+GR    ++  R  +  
Sbjct: 253 KNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYIL-RKGLDS 311

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            L    A+V +  R G +E    +   M    DVV W +L+S+
Sbjct: 312 ILPVISALVTMYARCGKLELGQRVFDQMDKR-DVVSWNSLISS 353


>gi|356531902|ref|XP_003534515.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  334 bits (857), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 173/408 (42%), Positives = 244/408 (59%), Gaps = 3/408 (0%)

Query: 6    VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
            +VSW  M+ G+V N ++++ L+ FR M+   V  D  T  ++I  CA  G L     VH 
Sbjct: 604  IVSWGLMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHA 663

Query: 66   LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
               +    ++  + ++LIDMYSK G +  A  +F      ++  W +MISG A+HG    
Sbjct: 664  YNHKIGHRIDAYVGSSLIDMYSKSGSLDDAWTIFRQTNEPNIVFWTSMISGCALHGQGKQ 723

Query: 126  ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
            A  +F +M    ++P+ +TFLG+L AC H GL+EEG +YF  M+  Y I P +EH  +MV
Sbjct: 724  AICLFEEMLNQGIIPNEVTFLGVLNACCHAGLLEEGCRYFRMMKDAYCINPGVEHCTSMV 783

Query: 186  DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMGG 242
            DL GRAGH+ E    I    +     VW++ LS+CR  K +E+G+     ++ ++    G
Sbjct: 784  DLYGRAGHLTETKNFIFENGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPG 843

Query: 243  DYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQA 302
             YVLLSNM     RWD A  VR +M ++G++K  G+SW++L   IH F  GDRSHP+ + 
Sbjct: 844  AYVLLSNMCASNHRWDEAARVRSLMHQRGIKKQPGQSWIQLKDQIHTFIMGDRSHPQDEE 903

Query: 303  IDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIR 362
            I   L  LI R K  G+    +LV+ DV EE+ E  + HHSEKLA+ +GI+ T+  T IR
Sbjct: 904  IYSYLDILIGRLKEIGYSFDVKLVMQDVEEEQGEVLISHHSEKLAVVFGIINTANRTPIR 963

Query: 363  ISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            I KNLRIC DCH++IK  S+LL R II+RD  RFH F+ G CSCGDYW
Sbjct: 964  IIKNLRICTDCHNFIKYASQLLDREIILRDIHRFHHFKHGGCSCGDYW 1011



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 113/238 (47%), Gaps = 22/238 (9%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KDVVSWN+++ G ++     +AL     M+    E    TF+  +   + L  +   
Sbjct: 482 LPYKDVVSWNTIVDGLMQFGYERQALEQLYCMVECGTEFSVVTFSIALILSSSLSLVELG 541

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ----------------R 104
             +H ++++     +  + ++L++MY KCG++  A  V   V                 +
Sbjct: 542 RQLHGMVLKFGFCRDGFIRSSLVEMYCKCGRMDNASIVLKDVPLDFLKNGNAGVTCKELK 601

Query: 105 NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKY 164
             +  W  M+SG   +G   D    F  M    V+ D  T   +++AC++ G++E GR  
Sbjct: 602 AGIVSWGLMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHV 661

Query: 165 FDHMRSRYSIQPQLEHY--GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
             +    + I  +++ Y   +++D+  ++G +++A+  I   T EP++V W +++S C
Sbjct: 662 HAY---NHKIGHRIDAYVGSSLIDMYSKSGSLDDAW-TIFRQTNEPNIVFWTSMISGC 715



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 6/140 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P ++  +W  +I GF R    +   + FREM +    P+++T +S+   C+    L   
Sbjct: 350 IPQRNTQTWTILISGFSRAGSSEVVFKLFREMRAKGACPNQYTLSSLFKCCSLDINLQLG 409

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++   I+ + +L  +++D+Y KC   + A+ VF+ +   DV  WN MIS     
Sbjct: 410 KGVHAWMLRNGIDADVVLGNSILDLYLKCKVFEYAERVFELMNEGDVVSWNIMISAY--- 466

Query: 121 GLAADASAIFTKMEMFNVLP 140
                A  +   ++MF  LP
Sbjct: 467 ---LRAGDVEKSLDMFRRLP 483



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + ++V W SMI G   + +  +A+  F EML+  + P++ TF  V+  C   G L     
Sbjct: 702 EPNIVFWTSMISGCALHGQGKQAICLFEEMLNQGIIPNEVTFLGVLNACCHAGLLEEGCR 761

Query: 63  VHNLIIEKK-IELNFILSAALIDMYSKCGKIQMAKE-VFDTVQRNDVSVWNAMISGVAIH 120
              ++ +   I        +++D+Y + G +   K  +F+    +  SVW + +S   +H
Sbjct: 762 YFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTETKNFIFENGISHLTSVWKSFLSSCRLH 821



 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 93/225 (41%), Gaps = 22/225 (9%)

Query: 45  ASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR 104
           +++  G   LG L HA  V N  ++     N++L+     +Y K   +  A+++FD + +
Sbjct: 299 STISNGPPPLGTL-HALSVKNGSLQTLNSANYLLT-----LYVKSSNMDHARKLFDEIPQ 352

Query: 105 NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKY 164
            +   W  +ISG +  G +     +F +M      P+  T   L   CS    ++ G+  
Sbjct: 353 RNTQTWTILISGFSRAGSSEVVFKLFREMRAKGACPNQYTLSSLFKCCSLDINLQLGKGV 412

Query: 165 FDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA----- 219
              M  R  I   +    +++DL  +    E A  +   M  E DVV W  ++SA     
Sbjct: 413 HAWML-RNGIDADVVLGNSILDLYLKCKVFEYAERVFELMN-EGDVVSWNIMISAYLRAG 470

Query: 220 -----CRTFKRLELGEV----AIVNISRLMGGDYVLLSNMYCYLK 255
                   F+RL   +V     IV+     G +   L  +YC ++
Sbjct: 471 DVEKSLDMFRRLPYKDVVSWNTIVDGLMQFGYERQALEQLYCMVE 515


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  334 bits (857), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 172/418 (41%), Positives = 256/418 (61%), Gaps = 23/418 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           M +K+V++WN+M+G ++++   ++ LR ++ MLS + V PD  T+ ++  GCA LGA   
Sbjct: 463 MSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANK- 521

Query: 60  AYWVHNLIIEKKIELNFILSA----ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
              + + II + +++  I+      A+I MYSKCG+I  A++VFD +   D+  WNAMI+
Sbjct: 522 ---LGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMIT 578

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           G + HG+   A  IF  +      PD I+++ +L+ CSH GLV+EG+ YFD M+  ++I 
Sbjct: 579 GYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNIS 638

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVN 235
           P LEH+  MVDLLGRAGH+ EA  LI  M M+P   VW ALLSAC+     EL E+A  +
Sbjct: 639 PGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKH 698

Query: 236 ISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKA 292
           +  L     G Y+L++ +Y    + D +  +R++M+ KG++K+ G SW+E+   +H FKA
Sbjct: 699 VFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKA 758

Query: 293 GDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGI 352
            D SHP+  AI K L  L+++    G+      V  D +  E      HHSEKLA+A+G+
Sbjct: 759 DDVSHPQVLAIRKKLDELMEKIARLGY------VRTDSTRSE-----IHHSEKLAVAFGL 807

Query: 353 LKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           +       I I KNLRIC DCH+ IK+IS +  R  ++RD +RFH F GG CSCGDYW
Sbjct: 808 MTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 107/219 (48%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++DVVSWN M+    ++ R  EAL    +M S  V  D  T+ S +  CARL +L   
Sbjct: 230 MPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWG 289

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +I     ++  +++AL+++Y+K G  + AK VF+++   +   W  +ISG   +
Sbjct: 290 KQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQY 349

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   ++  +F +M    +  D      L++ C     +  GR+          IQ  +  
Sbjct: 350 GCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVS 409

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +++ +  +  +++ A  +   M  E D+V W ++++A
Sbjct: 410 -NSLISMYAKCDNLQSAEAIFRFMN-EKDIVSWTSMITA 446



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 117/252 (46%), Gaps = 36/252 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNH 59
           MP +DV SWN+++ G+ ++ ++  +L  F  M  S    P+ FT A  +  C  LG  + 
Sbjct: 97  MPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSL 156

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAK----------------------- 96
           A  +  ++ +   + +  ++AAL+DM+ +CG + +A                        
Sbjct: 157 ALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVK 216

Query: 97  --------EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGL 148
                   E+FD++   DV  WN M+S ++  G   +A  +   M+   V  DS T+   
Sbjct: 217 TYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSS 276

Query: 149 LTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME 207
           LTAC+    +  G++     +R+   I P +    A+V+L  ++G  +EA G+  S+  +
Sbjct: 277 LTACARLSSLRWGKQLHAQVIRNLPHIDPYVA--SALVELYAKSGCFKEAKGVFNSLH-D 333

Query: 208 PDVVVWRALLSA 219
            + V W  L+S 
Sbjct: 334 RNNVAWTVLISG 345



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 4/179 (2%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D++ V+W  +I GF++   F E++  F +M +  +  D+F  A++I GC     L     
Sbjct: 333 DRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQ 392

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+L ++       ++S +LI MY+KC  +Q A+ +F  +   D+  W +MI+  +  G 
Sbjct: 393 LHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGN 452

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
            A A   F  M   NV    IT+  +L A    G  E+G + +  M S   ++P    Y
Sbjct: 453 VAKAREFFDGMSEKNV----ITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTY 507



 Score = 38.9 bits (89), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 76/185 (41%), Gaps = 18/185 (9%)

Query: 42  FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT 101
           F   ++++     GAL+ A     L++      N I    +++ Y+K G++  A E+F  
Sbjct: 40  FLQNTLLHAYLSCGALSDA---RRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGR 96

Query: 102 VQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMF-------NVLPDSITFLGLLTACSH 154
           +   DV+ WN ++SG         +      +E F       +  P++ T    + +C  
Sbjct: 97  MPARDVASWNTLMSGY------FQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGA 150

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
            G      +    M  ++  Q   E   A+VD+  R G ++ A  L   +  EP +    
Sbjct: 151 LGWHSLALQLL-AMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIK-EPTMFCRN 208

Query: 215 ALLSA 219
           ++L+ 
Sbjct: 209 SMLAG 213


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  334 bits (857), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 168/410 (40%), Positives = 251/410 (61%), Gaps = 4/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D V WNSM+  + +N   DE++   REM ++ V P + T  +VI   A +  L +   +
Sbjct: 212 RDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREI 271

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H        + N  +  ALIDMY+KCG +++A  +F+ ++   V  WNA+I+G A+HGLA
Sbjct: 272 HGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLA 331

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  +F KM   +  PD ITF+G+L ACS   L++EGR  ++ M   Y I P ++HY  
Sbjct: 332 VGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTC 390

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM--- 240
           M+DLLG  G ++EAY LI +M+++PD  VW ALL++C+    +EL E+A+  +  L    
Sbjct: 391 MIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPDD 450

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G+YV+L+NMY    +W+  E +R++M  K ++K+   SW+E+   ++ F AGD SH  +
Sbjct: 451 SGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVKNKVYAFLAGDVSHSNS 510

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
            AI   L  L       G+ P T  V  DV E+EK   +  HSE+LA+A+G++ TSPGT 
Sbjct: 511 DAIYAELKRLEGLMHEAGYAPDTGSVFHDVEEDEKTSMVCSHSERLAIAFGLISTSPGTR 570

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + I+KNLRIC DCH  IK IS+++ R I VRD  R+H F+ G+CSCGD+W
Sbjct: 571 LLITKNLRICEDCHVAIKFISKIMEREITVRDVNRYHSFKHGMCSCGDHW 620



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 110/219 (50%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P +++  WN +I G+  N   D A+  + +ML   + PD FT   V+  C+ L A+   
Sbjct: 108 IPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEG 167

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +I+   E +  + AALIDMY+KCG +  A  VFD +   D  +WN+M++  A +
Sbjct: 168 RSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQN 227

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   ++ ++  +M    V P   T + ++++ +    +  GR+       R+  Q   + 
Sbjct: 228 GHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGRE-IHGFGWRHGFQSNDKV 286

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++D+  + G ++ A  L   +  E  VV W A+++ 
Sbjct: 287 KTALIDMYAKCGSVKVALALFERLR-EKRVVSWNAIITG 324



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 88/178 (49%), Gaps = 2/178 (1%)

Query: 42  FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT 101
           + + S++  C    ALN    +H       I  N  L+  L+ +Y+    +  A+ +FD 
Sbjct: 48  YGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDK 107

Query: 102 VQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG 161
           + + ++ +WN +I G A +G   +A  ++ KM  + + PD+ T   +L ACS    + EG
Sbjct: 108 IPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEG 167

Query: 162 RKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           R   +++  +   +  L    A++D+  + G + +A G +    +  D V+W ++L+A
Sbjct: 168 RSIHEYV-IKSGWERDLFVGAALIDMYAKCGCVMDA-GRVFDKIVVRDAVLWNSMLAA 223



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K VVSWN++I G+  +     AL  F +M      PD  TF  V+  C+R   L+    
Sbjct: 312 EKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRA 370

Query: 63  VHNLII-EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIH 120
           ++NL++ +  I         +ID+   CG++  A ++   +  + D  VW A+++   IH
Sbjct: 371 LYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIH 430

Query: 121 G 121
           G
Sbjct: 431 G 431


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  334 bits (857), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 164/414 (39%), Positives = 250/414 (60%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           M  KD++SWN++IGG+ +N   +EAL  F  +L  K   PD+ T A V+  CA L A + 
Sbjct: 458 MRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDK 517

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  I+      +  ++ +L+DMY+KCG + +A  +FD +   D+  W  MI+G  +
Sbjct: 518 GREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGM 577

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +A A+F +M    +  D I+F+ LL ACSH GLV+EG ++F+ MR    I+P +E
Sbjct: 578 HGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVE 637

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY  +VD+L R G + +AY  I +M + PD  +W ALL  CR    ++L E     +  L
Sbjct: 638 HYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFEL 697

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVL++N+Y   ++W+  + +R+ + ++G+RK+ G SW+E+ G ++ F AGD S
Sbjct: 698 EPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSS 757

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           +PE + I+  L  +  R   EG+ P T+  L+D  E EKE  L  HSEKLA+A GI+ + 
Sbjct: 758 NPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSG 817

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  IR++KNLR+C DCH   K +S+L RR I++RD  RFH+F+ G CSC  +W
Sbjct: 818 HGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 119/219 (54%), Gaps = 6/219 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA--RLGALN 58
           M ++DV+SWNS+I G+V N   ++ L  F +ML S +E D  T  SV  GCA  RL +L 
Sbjct: 256 MTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG 315

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
            A  VH++ ++            L+DMYSKCG +  AK VF  +    V  + +MI+G A
Sbjct: 316 RA--VHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYA 373

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
             GLA +A  +F +ME   + PD  T   +L  C+   L++EG++  + ++    +   +
Sbjct: 374 REGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEN-DLGFDI 432

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
               A++D+  + G ++EA  + + M ++ D++ W  ++
Sbjct: 433 FVSNALMDMYAKCGSMQEAELVFSEMRVK-DIISWNTII 470



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D+ VVS+ SMI G+ R     EA++ F EM    + PD +T  +V+  CAR   L+  
Sbjct: 357 MSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEG 416

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  I E  +  +  +S AL+DMY+KCG +Q A+ VF  ++  D+  WN +I G + +
Sbjct: 417 KRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKN 476

Query: 121 GLAADASAIFT-KMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQL 178
             A +A ++F   +E     PD  T   +L AC+     ++GR+   + MR+ Y     +
Sbjct: 477 CYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHV 536

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            +  ++VD+  + G +  A+ L   +    D+V W  +++ 
Sbjct: 537 AN--SLVDMYAKCGALLLAHMLFDDIA-SKDLVSWTVMIAG 574



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 112/255 (43%), Gaps = 33/255 (12%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           WN ++    ++  F  ++  F++M+SS VE D +TF+ V    + L +++    +H  I+
Sbjct: 163 WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 222

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
           +        +  +L+  Y K  ++  A++VFD +   DV  WN++I+G   +GLA    +
Sbjct: 223 KSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLS 282

Query: 129 IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---------------KYFDHMRSRYS 173
           +F +M +  +  D  T + +   C+   L+  GR               ++ + +   YS
Sbjct: 283 VFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYS 342

Query: 174 IQPQLE---------------HYGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRA 215
               L+                Y +M+    R G   EA  L   M  E   PDV    A
Sbjct: 343 KCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTA 402

Query: 216 LLSACRTFKRLELGE 230
           +L+ C  ++ L+ G+
Sbjct: 403 VLNCCARYRLLDEGK 417



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 97/218 (44%), Gaps = 6/218 (2%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+ V   N+ +  F  +   + A++     +S K + D  T  SV+  CA   +L     
Sbjct: 58  DRSVTDANTQLRRFCESGNLENAVKLL--CVSGKWDIDPRTLCSVLQLCADSKSLKDGKE 115

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           V N I      ++  L + L  MY+ CG ++ A  VFD V+      WN +++ +A  G 
Sbjct: 116 VDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGD 175

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHY 181
            + +  +F KM    V  DS TF  +  + S    V  G +     ++S +  +  + + 
Sbjct: 176 FSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGN- 234

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            ++V    +   ++ A  +   MT E DV+ W ++++ 
Sbjct: 235 -SLVAFYLKNQRVDSARKVFDEMT-ERDVISWNSIING 270


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  334 bits (857), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 170/413 (41%), Positives = 242/413 (58%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  ++VS N+ I G  +N   + AL FF  M  + VE +  TF S +  C+ L AL   
Sbjct: 127 LPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQG 186

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L I+  ++    +  +L+ MYS+CG +  ++ V       D+ + +AMIS    H
Sbjct: 187 QQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFH 246

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +M      P+ +TFL LL ACSH GL +EG   F+ M   Y +QP ++H
Sbjct: 247 GHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKH 306

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  +VDLLGR+G + EA  LI SM ++PD V+W+ LLSAC+T K+ ++ E     +  L 
Sbjct: 307 YTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELD 366

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D   YVLLSN+     RW+    VRE M+++ VRK  G SW+EL G IHQF  GD SH
Sbjct: 367 PHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESH 426

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
              + I + L  ++ R +  G+ P   +V  D+ +EEKE +L HHSEKLA+A+  L    
Sbjct: 427 SRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLSLPE 486

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH  IK++S+++ R I+VRD  RFH F+ G CSCGDYW
Sbjct: 487 GVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 539



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 112/253 (44%), Gaps = 33/253 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++V +WN+M+ G   +   +E+L FF  M    ++PD++   S+   CA L  +   
Sbjct: 26  MPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCAGLRDVVSG 85

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++   ++ +  + ++L  MY +CG ++  +     +   ++   N  ISG   +
Sbjct: 86  RQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVSCNTTISGRTQN 145

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKY---------------- 164
           G A  A   F  M    V  +++TF+  +T+CS    + +G++                 
Sbjct: 146 GDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVM 205

Query: 165 --FDHMRSRY-----SIQPQLEHYG-------AMVDLLGRAGHIEEAYGLITSMT---ME 207
               HM SR      S +  LE+ G       AM+   G  GH ++A GL   M     E
Sbjct: 206 TSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAE 265

Query: 208 PDVVVWRALLSAC 220
           P+ V +  LL AC
Sbjct: 266 PNEVTFLTLLYAC 278



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 41/82 (50%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
           LI  Y K G ++ A+++FD +   +V+ WNAM++G+   GL  ++   F  M    + PD
Sbjct: 6   LIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPD 65

Query: 142 SITFLGLLTACSHCGLVEEGRK 163
                 L   C+    V  GR+
Sbjct: 66  EYGLGSLFRCCAGLRDVVSGRQ 87


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  334 bits (857), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 172/418 (41%), Positives = 256/418 (61%), Gaps = 23/418 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           M +K+V++WN+M+G ++++   ++ LR ++ MLS + V PD  T+ ++  GCA LGA   
Sbjct: 483 MSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANK- 541

Query: 60  AYWVHNLIIEKKIELNFILSA----ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
              + + II + +++  I+      A+I MYSKCG+I  A++VFD +   D+  WNAMI+
Sbjct: 542 ---LGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMIT 598

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           G + HG+   A  IF  +      PD I+++ +L+ CSH GLV+EG+ YFD M+  ++I 
Sbjct: 599 GYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNIS 658

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVN 235
           P LEH+  MVDLLGRAGH+ EA  LI  M M+P   VW ALLSAC+     EL E+A  +
Sbjct: 659 PGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKH 718

Query: 236 ISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKA 292
           +  L     G Y+L++ +Y    + D +  +R++M+ KG++K+ G SW+E+   +H FKA
Sbjct: 719 VFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKA 778

Query: 293 GDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGI 352
            D SHP+  AI K L  L+++    G+      V  D +  E      HHSEKLA+A+G+
Sbjct: 779 DDVSHPQVLAIRKKLDELMEKIARLGY------VRTDSTRSE-----IHHSEKLAVAFGL 827

Query: 353 LKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           +       I I KNLRIC DCH+ IK+IS +  R  ++RD +RFH F GG CSCGDYW
Sbjct: 828 MTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 885



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++DVVSWN M+    ++ R  EAL    +M S  V  D  T+ S +  CARL +L   
Sbjct: 250 MPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWG 309

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
             +H  +I     ++  +++AL+++Y+K G  + AK VF+++  RN+V+ W  +ISG   
Sbjct: 310 KQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVA-WTVLISGFLQ 368

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G   ++  +F +M    +  D      L++ C     +  GR+          IQ  + 
Sbjct: 369 YGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVV 428

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              +++ +  +  +++ A  +   M  E D+V W ++++A
Sbjct: 429 S-NSLISMYAKCDNLQSAEAIFRFMN-EKDIVSWTSMITA 466



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 117/252 (46%), Gaps = 36/252 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNH 59
           MP +DV SWN+++ G+ ++ ++  +L  F  M  S    P+ FT A  +  C  LG  + 
Sbjct: 117 MPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSL 176

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAK----------------------- 96
           A  +  ++ +   + +  ++AAL+DM+ +CG + +A                        
Sbjct: 177 ALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVK 236

Query: 97  --------EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGL 148
                   E+FD++   DV  WN M+S ++  G   +A  +   M+   V  DS T+   
Sbjct: 237 TYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSS 296

Query: 149 LTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME 207
           LTAC+    +  G++     +R+   I P +    A+V+L  ++G  +EA G+  S+  +
Sbjct: 297 LTACARLSSLRWGKQLHAQVIRNLPHIDPYVA--SALVELYAKSGCFKEAKGVFNSLH-D 353

Query: 208 PDVVVWRALLSA 219
            + V W  L+S 
Sbjct: 354 RNNVAWTVLISG 365



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 4/179 (2%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D++ V+W  +I GF++   F E++  F +M +  +  D+F  A++I GC     L     
Sbjct: 353 DRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQ 412

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+L ++       ++S +LI MY+KC  +Q A+ +F  +   D+  W +MI+  +  G 
Sbjct: 413 LHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGN 472

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
            A A   F  M   NV    IT+  +L A    G  E+G + +  M S   ++P    Y
Sbjct: 473 VAKAREFFDGMSEKNV----ITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTY 527



 Score = 38.5 bits (88), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 76/185 (41%), Gaps = 18/185 (9%)

Query: 42  FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT 101
           F   ++++     GAL+ A     L++      N I    +++ Y+K G++  A E+F  
Sbjct: 60  FLQNTLLHAYLSCGALSDA---RRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGR 116

Query: 102 VQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMF-------NVLPDSITFLGLLTACSH 154
           +   DV+ WN ++SG         +      +E F       +  P++ T    + +C  
Sbjct: 117 MPARDVASWNTLMSGY------FQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGA 170

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
            G      +    M  ++  Q   E   A+VD+  R G ++ A  L   +  EP +    
Sbjct: 171 LGWHSLALQLL-AMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIK-EPTMFCRN 228

Query: 215 ALLSA 219
           ++L+ 
Sbjct: 229 SMLAG 233


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  334 bits (856), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 169/413 (40%), Positives = 242/413 (58%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP K+V+SW +M+ G+ +N   +EA++ F EM  + VEPD FT  SVI  CA L +L   
Sbjct: 331 MPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEG 390

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H   +   +     +S ALI +Y KCG  + +  +F  +   D   W A+++G A  
Sbjct: 391 AQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQF 450

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +   +F +M    + PD +TF+G+L+ACS  GLVE+G +YF+ M   + I P ++H
Sbjct: 451 GKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDH 510

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
              ++DLLGRAG +EEA   I +M   PDVV W  LLS+CR    +E+G+ A   ++ + 
Sbjct: 511 CTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALE 570

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 YVLLS++Y    +WD    +R  M+ K VRK  G SW++  G +H F A D+S 
Sbjct: 571 PQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQSS 630

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    I   L  L  +   EG++P    VL DV E EK   L HHSEKLA+A+G++   P
Sbjct: 631 PFLGQIYAELEKLNYKMIEEGYVPDMSSVLHDVEESEKIKMLNHHSEKLAIAFGLIFVPP 690

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH+  K IS++ +R I+VRD +RFH F+ G CSCGD+W
Sbjct: 691 GLPIRVIKNLRVCGDCHNATKFISKITQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 121/226 (53%), Gaps = 4/226 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + ++D +SW  MI G ++N    EAL  FREM  +    D+FTF SV+  C  L AL   
Sbjct: 230 LKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEG 289

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +I    + N  + +AL+DMYSKC  I+ A+ VF  + + +V  W AM+ G   +
Sbjct: 290 KQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQN 349

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS-IQPQLE 179
           G + +A  IF +M+   V PD  T   ++++C++   +EEG ++  H R+  S +   + 
Sbjct: 350 GFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQF--HCRALVSGLISFIT 407

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKR 225
              A++ L G+ G  E ++ L T M +  D V W ALL+    F +
Sbjct: 408 VSNALITLYGKCGSTENSHRLFTEMNIR-DEVSWTALLAGYAQFGK 452



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 114/237 (48%), Gaps = 18/237 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           MP +D VSWN  I G+       +A+R ++ ML  + +  ++ TF++++  C++   ++ 
Sbjct: 97  MPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDL 156

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              ++  I++     +  + + L+DMY+K G I  AK  FD +   +V + N MI+G+  
Sbjct: 157 GRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMR 216

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR------SRYS 173
            G+  ++  +F  ++      DSI++  ++T     GL  E    F  MR       +++
Sbjct: 217 CGMIEESQRLFCGLKE----RDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFT 272

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL---SACRTFKRLE 227
               L   G+++ L    G  ++ +  +     + +V V  AL+   S CR+ K  E
Sbjct: 273 FGSVLTACGSLLAL----GEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAE 325



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 92/225 (40%), Gaps = 48/225 (21%)

Query: 32  MLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKI-ELNFILSAALIDMYSKCG 90
           +L +  +P+ F   ++I    +LG L +A+ V + I +  +   N ILS     +YSK G
Sbjct: 31  ILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPNLFSWNTILS-----VYSKLG 85

Query: 91  KIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLL 149
            +   +++F+ +   D   WN  ISG A +G  +DA  ++  M     +  + ITF  +L
Sbjct: 86  LLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTML 145

Query: 150 TACS-----------------------------------HCGLVEEGRKYFDHMRSRYSI 174
             CS                                     GL+ + ++YFD M  R  +
Sbjct: 146 ILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVV 205

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                    M+  L R G IEE+  L   +  E D + W  +++ 
Sbjct: 206 MCN-----TMITGLMRCGMIEESQRLFCGLK-ERDSISWTIMITG 244



 Score = 42.0 bits (97), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 42/90 (46%)

Query: 44  FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           +AS++  C        A  +H LI++   +    LS  LI  Y K G +  A  VFD + 
Sbjct: 8   YASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIP 67

Query: 104 RNDVSVWNAMISGVAIHGLAADASAIFTKM 133
           + ++  WN ++S  +  GL +    IF  M
Sbjct: 68  QPNLFSWNTILSVYSKLGLLSQMQQIFNLM 97


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  334 bits (856), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 163/414 (39%), Positives = 255/414 (61%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNH 59
           M +K V SW+S+IG       + E L    +M    +   ++    S +  C  LG+ N 
Sbjct: 192 MDEKSVASWSSIIGAHASVEMWHECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNL 251

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H +++    ELN ++  +LIDMY KCG ++    VF  +   +   +  MI+G+AI
Sbjct: 252 GRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAI 311

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +A  +F+ M    + PD + ++G+L+ACSH GLV+EG + F+ M+  + I+P ++
Sbjct: 312 HGRGREALRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRMQFEHMIKPTIQ 371

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HYG MVDL+GRAG ++EAY LI SM ++P+ VVWR+LLSAC+    LE+GE+A  NI +L
Sbjct: 372 HYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAADNIFKL 431

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                GDY++L+NMY   ++W     +R  M +K + ++ G S +E    +++F + D+S
Sbjct: 432 NKHNPGDYLVLANMYARAQKWANVARIRTEMVEKNLVQTPGFSLVEANRNVYKFVSQDKS 491

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
            P+ + I  ++  +  + K EG+ P    VL+DV E+EK   L HHS+KLA+A+ +++TS
Sbjct: 492 QPQCETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTS 551

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G+ +RIS+NLR+C+DCH++ K IS +  R I VRD  RFH F+ G CSC DYW
Sbjct: 552 EGSPVRISRNLRMCNDCHTYTKFISVIYEREITVRDSNRFHHFKDGTCSCKDYW 605



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 111/254 (43%), Gaps = 50/254 (19%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           +N+MI G V +   +EAL  + EML   +EPD FT+  V+  C+ L AL     +H  + 
Sbjct: 99  YNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVF 158

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
              +E++  +   LI MY KCG I+ A  VF+ +    V+ W+++I   A   +  +   
Sbjct: 159 NAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLM 218

Query: 129 IFTKM--EMFNVLPDSITFLGLLTACSH-------------------------------- 154
           +   M  E  +   +SI  +  L+AC+H                                
Sbjct: 219 LLGDMSREGRHRAEESI-LVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDM 277

Query: 155 ---CGLVEEGRKYFDHM--RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME-- 207
              CG +E+G   F +M  ++RYS       Y  M+  L   G   EA  + + M  E  
Sbjct: 278 YVKCGSLEKGLCVFQNMAHKNRYS-------YTVMIAGLAIHGRGREALRVFSDMLEEGL 330

Query: 208 -PDVVVWRALLSAC 220
            PD VV+  +LSAC
Sbjct: 331 TPDDVVYVGVLSAC 344



 Score = 42.4 bits (98), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 6/145 (4%)

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           N + S AL    S+ G ++ A  +F  ++      +N MI G        +A  ++ +M 
Sbjct: 68  NLVASCAL----SRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEML 123

Query: 135 MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194
              + PD+ T+  +L ACS    ++EG +   H+ +   ++  +     ++ + G+ G I
Sbjct: 124 ERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFNA-GLEVDVFVQNGLISMYGKCGAI 182

Query: 195 EEAYGLITSMTMEPDVVVWRALLSA 219
           E A G++     E  V  W +++ A
Sbjct: 183 EHA-GVVFEQMDEKSVASWSSIIGA 206


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  333 bits (855), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 171/411 (41%), Positives = 250/411 (60%), Gaps = 4/411 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDVVSW SMI     N    EA+  FR M+ + +  D      ++   A L ALN    +
Sbjct: 550 KDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREI 609

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  ++ K   L   ++ A++DMY+ CG +Q AK VFD ++R  +  + +MI+   +HG  
Sbjct: 610 HCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCG 669

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  +F KM   NV PD I+FL LL ACSH GL++EGR +   M   Y ++P  EHY  
Sbjct: 670 KAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVC 729

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
           +VD+LGRA  + EA+  +  M  EP   VW ALL+ACR+    E+GE+A   ++ +    
Sbjct: 730 LVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKN 789

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G+ VL+SN++    RW+  E VR  MK  G+ K  G SW+E+ G +H+F A D+SHPE+
Sbjct: 790 PGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPES 849

Query: 301 QAIDKILGSLIQRTKSE-GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           + I + L  + ++ + E G++  T+ VL +V E EK   L+ HSE++A+AYG+L+T    
Sbjct: 850 KEIYEKLSEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRA 909

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            +RI+KNLR+C DCH++ K++S+L RR I++RD  RFH FE GLCSCGD W
Sbjct: 910 CLRITKNLRVCRDCHTFCKLVSKLFRRDIVMRDANRFHHFESGLCSCGDSW 960



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 105/218 (48%), Gaps = 2/218 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPD+   +WN+MIG +V N     AL  +  M    V     +F +++  CA+L  +   
Sbjct: 142 MPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSG 201

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
             +H+L+++        +  AL+ MY+K   +  A+ +FD  Q + D  +WN+++S  + 
Sbjct: 202 SELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYST 261

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            G + +   +F +M M    P+S T +  LTAC      + G++    +    +   +L 
Sbjct: 262 SGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELY 321

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              A++ +  R G + +A  ++  M    DVV W +L+
Sbjct: 322 VCNALIAMYTRCGKMPQAERILRQMN-NADVVTWNSLI 358



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 118/260 (45%), Gaps = 48/260 (18%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M DKD++SW ++I G+ +N    EAL  FR++   ++E D+    S++   + L ++   
Sbjct: 447 MHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIV 506

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I+ K + L+ ++   L+D+Y KC  +  A  VF++++  DV  W +MIS  A++
Sbjct: 507 KEIHCHILRKGL-LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALN 565

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGL-------------------------------- 148
           G  ++A  +F +M    +  DS+  L +                                
Sbjct: 566 GNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIA 625

Query: 149 -----LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
                + AC  CG ++  +  FD +  +  +Q     Y +M++  G  G  + A  L   
Sbjct: 626 VAVVDMYAC--CGDLQSAKAVFDRIERKGLLQ-----YTSMINAYGMHGCGKAAVELFDK 678

Query: 204 MTME---PDVVVWRALLSAC 220
           M  E   PD + + ALL AC
Sbjct: 679 MRHENVSPDHISFLALLYAC 698



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 109/230 (47%), Gaps = 25/230 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M + DVV+WNS+I G+V+N  + EAL FF +M+++  + D+ +  S+I    RL  L   
Sbjct: 346 MNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAG 405

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +I+   + N  +   LIDMYSKC         F  +   D+  W  +I+G A +
Sbjct: 406 MELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQN 465

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACS-----------HCGLVEEGRKYFDHMR 169
               +A  +F  +    +  D +    +L A S           HC ++ +G    D + 
Sbjct: 466 DCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKG--LLDTV- 522

Query: 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               IQ +L      VD+ G+  ++  A  +  S+  + DVV W +++S+
Sbjct: 523 ----IQNEL------VDVYGKCRNMGYATRVFESIKGK-DVVSWTSMISS 561



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 9/152 (5%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGC-----ARLGALNH 59
           D V WNS++  +  + +  E L  FREM  +   P+ +T  S +  C     A+LG   H
Sbjct: 248 DAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIH 307

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
           A    +++          +  ALI MY++CGK+  A+ +   +   DV  WN++I G   
Sbjct: 308 A----SVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQ 363

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           + +  +A   F+ M       D ++   ++ A
Sbjct: 364 NLMYKEALEFFSDMIAAGHKSDEVSMTSIIAA 395



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 16/188 (8%)

Query: 43  TFASVIYGCARLGALNHAYWVHNLIIE--KKIELNFILSAALIDMYSKCGKIQMAKEVFD 100
            FA V+  C +  A++    +H+ I +     EL+F L+  L+ MY KCG +  A++VFD
Sbjct: 82  AFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDF-LAGKLVFMYGKCGSLDDAEKVFD 140

Query: 101 TVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE 160
            +       WN MI     +G  A A A++  M +  V     +F  LL AC+    +  
Sbjct: 141 EMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRS 200

Query: 161 GRKYFDHMRSRYSIQPQLEHY------GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
           G +        +S+  +L ++       A+V +  +   +  A  L      + D V+W 
Sbjct: 201 GSEL-------HSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWN 253

Query: 215 ALLSACRT 222
           ++LS+  T
Sbjct: 254 SILSSYST 261


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  333 bits (855), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 164/414 (39%), Positives = 250/414 (60%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           M  KD++SWN++IGG+ +N   +EAL  F  +L  K   PD+ T A V+  CA L A + 
Sbjct: 307 MRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDK 366

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  I+      +  ++ +L+DMY+KCG + +A  +FD +   D+  W  MI+G  +
Sbjct: 367 GREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGM 426

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +A A+F +M    +  D I+F+ LL ACSH GLV+EG ++F+ MR    I+P +E
Sbjct: 427 HGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVE 486

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY  +VD+L R G + +AY  I +M + PD  +W ALL  CR    ++L E     +  L
Sbjct: 487 HYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFEL 546

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVL++N+Y   ++W+  + +R+ + ++G+RK+ G SW+E+ G ++ F AGD S
Sbjct: 547 EPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSS 606

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           +PE + I+  L  +  R   EG+ P T+  L+D  E EKE  L  HSEKLA+A GI+ + 
Sbjct: 607 NPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSG 666

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  IR++KNLR+C DCH   K +S+L RR I++RD  RFH+F+ G CSC  +W
Sbjct: 667 HGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 720



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 119/219 (54%), Gaps = 6/219 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA--RLGALN 58
           M ++DV+SWNS+I G+V N   ++ L  F +ML S +E D  T  SV  GCA  RL +L 
Sbjct: 105 MTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG 164

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
            A  VH++ ++            L+DMYSKCG +  AK VF  +    V  + +MI+G A
Sbjct: 165 RA--VHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYA 222

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
             GLA +A  +F +ME   + PD  T   +L  C+   L++EG++  + ++    +   +
Sbjct: 223 REGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEN-DLGFDI 281

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
               A++D+  + G ++EA  + + M ++ D++ W  ++
Sbjct: 282 FVSNALMDMYAKCGSMQEAELVFSEMRVK-DIISWNTII 319



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D+ VVS+ SMI G+ R     EA++ F EM    + PD +T  +V+  CAR   L+  
Sbjct: 206 MSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEG 265

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  I E  +  +  +S AL+DMY+KCG +Q A+ VF  ++  D+  WN +I G + +
Sbjct: 266 KRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKN 325

Query: 121 GLAADASAIFT-KMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQL 178
             A +A ++F   +E     PD  T   +L AC+     ++GR+   + MR+ Y     +
Sbjct: 326 CYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHV 385

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            +  ++VD+  + G +  A+ L   +    D+V W  +++ 
Sbjct: 386 AN--SLVDMYAKCGALLLAHMLFDDIA-SKDLVSWTVMIAG 423



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 112/255 (43%), Gaps = 33/255 (12%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           WN ++    ++  F  ++  F++M+SS VE D +TF+ V    + L +++    +H  I+
Sbjct: 12  WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 71

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
           +        +  +L+  Y K  ++  A++VFD +   DV  WN++I+G   +GLA    +
Sbjct: 72  KSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLS 131

Query: 129 IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---------------KYFDHMRSRYS 173
           +F +M +  +  D  T + +   C+   L+  GR               ++ + +   YS
Sbjct: 132 VFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYS 191

Query: 174 IQPQLE---------------HYGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRA 215
               L+                Y +M+    R G   EA  L   M  E   PDV    A
Sbjct: 192 KCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTA 251

Query: 216 LLSACRTFKRLELGE 230
           +L+ C  ++ L+ G+
Sbjct: 252 VLNCCARYRLLDEGK 266


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  333 bits (855), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 170/411 (41%), Positives = 253/411 (61%), Gaps = 4/411 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D V WNSMI  + +N R  EAL   R+M ++ V P   T  S I   A   AL     +
Sbjct: 227 RDSVVWNSMIAAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGREL 286

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H     +  +    L  +L+DMY+K G +Q+A+ +F+ + + ++  WNAMI G  +HG  
Sbjct: 287 HGFGWRRGFDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHF 346

Query: 124 ADASAIFTKMEM-FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
            +A  +F KM +   V PD+ITF+G+L+AC+H G+V+E +++F  M   YSI+P ++H+ 
Sbjct: 347 DEALKLFNKMRVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFT 406

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM-- 240
            +VD+LG AG  EEAY LI  M M+PD  +W ALL+ C+  K +ELGE+A+  +  L   
Sbjct: 407 CLVDVLGHAGRFEEAYDLIKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPE 466

Query: 241 -GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             G+YVLLSN+Y    +W+ A  VR++M  +G++K  G SW+EL G  H F  GD SHP 
Sbjct: 467 DAGNYVLLSNIYAQSGKWEKAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHPR 526

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           +  I + L  L       G++P T  V  DV ++EK   +  HSE+LA+A+G++ T  GT
Sbjct: 527 SAEIYEELERLEGLMSDAGYMPDTMPVFHDVGDDEKRNMMRSHSERLAIAFGLISTPSGT 586

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           ++ ++KNLR+C DCH  IK+IS++++R II+RD  R+H F  G CSC DYW
Sbjct: 587 KLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 111/259 (42%), Gaps = 44/259 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++V  WN +I  + R+   + A++ +R M+   VEPD FT+   +  CA L  L   
Sbjct: 123 MPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETG 182

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++      +  + A L+DMY+KCG +  A+ VFD ++  D  VWN+MI+    +
Sbjct: 183 REVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQN 242

Query: 121 GLAADASAIFTKMEMFNVLPDSITFL---------------------------------- 146
           G   +A ++   M    V P   T +                                  
Sbjct: 243 GRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLK 302

Query: 147 -GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
             L+   +  G V+  R  F+ +  R     +L  + AM+   G  GH +EA  L   M 
Sbjct: 303 TSLVDMYAKSGWVQVARVLFEQLMKR-----ELVSWNAMICGYGMHGHFDEALKLFNKMR 357

Query: 206 ME----PDVVVWRALLSAC 220
           +E    PD + +  +LSAC
Sbjct: 358 VEAQVTPDNITFVGVLSAC 376



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 88/176 (50%), Gaps = 2/176 (1%)

Query: 44  FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           + SV+  C    +L     +H  ++   +  + +L+  L+D+Y+ CG +  A+ +FD + 
Sbjct: 65  YTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFDGMP 124

Query: 104 RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
           + +V +WN +I   A  G    A  ++  M  + V PD+ T+   L AC+    +E GR+
Sbjct: 125 KRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGRE 184

Query: 164 YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             + +   +  +      G +VD+  + G +++A  +   + +  D VVW ++++A
Sbjct: 185 VHERVLGTHWGEDMFVCAG-LVDMYAKCGCVDDARAVFDRIRVR-DSVVWNSMIAA 238


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  333 bits (854), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 172/413 (41%), Positives = 250/413 (60%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++VVSW+ MI G+ +     EAL  F++ L   V+ + FTF+SVI  C+    L   
Sbjct: 187 MPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELG 246

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L ++   + +  + +ALI +YSKCG I+ A +VFD +   ++ +WN+M+   A H
Sbjct: 247 KLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQH 306

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                   +F +M    + P+ I+FL +L ACSH GLVE+GR+YF  MR  Y I+P+ EH
Sbjct: 307 AHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKGREYFSLMRD-YGIEPETEH 365

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y ++VDLLGRAG ++EA  +I  M M P   VW ALL+ CR  K  E+       I+ + 
Sbjct: 366 YASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMD 425

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G +VLLSN Y    R++ A  +R++++ +GV+K  G SW+E    +H F AGDRSH
Sbjct: 426 SSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSH 485

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            +   I + L  L +  +  G++  T  VL  V  EEK   + +HSE+LA+A+G++   P
Sbjct: 486 AKWVEIYEKLEELEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHSERLAIAFGLITFPP 545

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH+ IK +S+   RV+IVRD  RFHRFE G CSCGDYW
Sbjct: 546 GRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 105/219 (47%), Gaps = 2/219 (0%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P K   +W+S+I  F +N     AL+FFR ML+  V PD   + S    C  L   +   
Sbjct: 87  PKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGK 146

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            VH L ++     +  + ++L+DMY+KCG+I  A+ +FD +   +V  W+ MI G A   
Sbjct: 147 SVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLD 206

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              +A  +F +  + +V  +  TF  ++  CS    +E G K    +  + S        
Sbjct: 207 DGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELG-KLIHGLCLKMSFDSSSFVG 265

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
            A++ L  + G IE AY +   +    ++ +W ++L AC
Sbjct: 266 SALISLYSKCGVIEGAYQVFDEIPTR-NLGLWNSMLIAC 303



 Score = 45.1 bits (105), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 14/172 (8%)

Query: 52  ARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWN 111
            R  +L     +H  I++  ++   ++S  LI++YSK      + +VFD   +   + W+
Sbjct: 36  TRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWS 95

Query: 112 AMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR 171
           ++IS  A +     A   F +M    V PD   +    +A   CG +       D  +S 
Sbjct: 96  SVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIY---PSATKACGFLRRS----DVGKSV 148

Query: 172 YSIQPQLEHY------GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           + +  +  +Y       ++VD+  + G I +A  L   M  E +VV W  ++
Sbjct: 149 HCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMP-ERNVVSWSGMI 199


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  333 bits (854), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 170/413 (41%), Positives = 242/413 (58%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  ++VS N+ I G  +N   + AL FF  M  + VE +  TF S +  C+ L AL   
Sbjct: 235 LPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQG 294

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L I+  ++    +  +L+ MYS+CG +  ++ V       D+ + +AMIS    H
Sbjct: 295 QQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFH 354

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +M      P+ +TFL LL ACSH GL +EG   F+ M   Y +QP ++H
Sbjct: 355 GHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKH 414

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  +VDLLGR+G + EA  LI SM ++PD V+W+ LLSAC+T K+ ++ E     +  L 
Sbjct: 415 YTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELD 474

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D   YVLLSN+     RW+    VRE M+++ VRK  G SW+EL G IHQF  GD SH
Sbjct: 475 PHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESH 534

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
              + I + L  ++ R +  G+ P   +V  D+ +EEKE +L HHSEKLA+A+  L    
Sbjct: 535 SRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLSLPE 594

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH  IK++S+++ R I+VRD  RFH F+ G CSCGDYW
Sbjct: 595 GVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 647



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 112/253 (44%), Gaps = 33/253 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++V +WN+M+ G   +   +E+L FF  M    ++PD++   S+   CA L  +   
Sbjct: 134 MPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCAGLRDVVSG 193

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++   ++ +  + ++L  MY +CG ++  +     +   ++   N  ISG   +
Sbjct: 194 RQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVSCNTTISGRTQN 253

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKY---------------- 164
           G A  A   F  M    V  +++TF+  +T+CS    + +G++                 
Sbjct: 254 GDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVM 313

Query: 165 --FDHMRSRY-----SIQPQLEHYG-------AMVDLLGRAGHIEEAYGLITSMT---ME 207
               HM SR      S +  LE+ G       AM+   G  GH ++A GL   M     E
Sbjct: 314 TSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAE 373

Query: 208 PDVVVWRALLSAC 220
           P+ V +  LL AC
Sbjct: 374 PNEVTFLTLLYAC 386



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 4/124 (3%)

Query: 40  DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF 99
           D+FT   ++   A LG    A      + E+  + N +    LI  Y K G ++ A+++F
Sbjct: 76  DRFTANHLLLAYADLGDFPTARG----LFERIPKRNVMSWNILIGGYVKNGDLETARKLF 131

Query: 100 DTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVE 159
           D +   +V+ WNAM++G+   GL  ++   F  M    + PD      L   C+    V 
Sbjct: 132 DEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCAGLRDVV 191

Query: 160 EGRK 163
            GR+
Sbjct: 192 SGRQ 195


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  333 bits (854), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 173/413 (41%), Positives = 246/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  + +VSWNSM+   V     ++ + +F  M  + +  D+ T  S++  C  LG    A
Sbjct: 201 MSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLA 260

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  I+   ++ N  ++ AL+D+Y+K G +  + +VF  +   D   W AM+S  A+H
Sbjct: 261 EAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMH 320

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A   F  M    V+PD +TF  LL+ACSH GLVEEG+ YF  M   Y ++ ++EH
Sbjct: 321 GRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIMYEFYGVELRVEH 380

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MVDLLGR+GH+ +AY LI SM MEP+  VW AL+ ACR    +ELG+     +  L 
Sbjct: 381 YSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGNIELGKEVAERLFSLD 440

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D   Y+ LSNMY    +W  A  VR +MK++ + ++ G S++E    IH F  GD+SH
Sbjct: 441 PSDSRNYITLSNMYSAAGQWRDASKVRALMKERVLIRNPGCSYIEHGNKIHCFVMGDQSH 500

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I   L  L+++ +  GF   TE VL DV EE KE  +  HSEKLA+A+G+L T+ 
Sbjct: 501 PDTEQIYNKLEELVRKNREVGFASKTEYVLHDVDEEVKEDLINKHSEKLAIAFGLLVTNA 560

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  + I+KN+RIC DCH + K+IS + +R II+RD  RFH F  GLCSCGDYW
Sbjct: 561 GMPLIITKNIRICGDCHGFAKLISLIEKRTIIIRDTKRFHHFTNGLCSCGDYW 613



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 112/221 (50%), Gaps = 5/221 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRF-FREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           +PDKD+VSWNS+I GF R A     L   FR      ++P++ T   V+  CA +G L+ 
Sbjct: 99  LPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVGELDV 158

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H + ++  + L   +  +LI++Y KCG ++ A  +F+ +    +  WN+M++ V +
Sbjct: 159 GKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVSWNSMVA-VHV 217

Query: 120 H-GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           H GLA      F  M    +  D  T + LL AC + G+ +       ++ +   +   L
Sbjct: 218 HMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLAEAVHGYILNG-GLDGNL 276

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               A++DL  + G + ++  +   M + PD V W A+LS+
Sbjct: 277 AIATALLDLYAKLGTLSDSCKVFGGM-INPDAVAWTAMLSS 316



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/206 (18%), Positives = 99/206 (48%), Gaps = 11/206 (5%)

Query: 21  RFDEALRFFREMLSSKVEPDKFTFASV-------IYGCARLGALNHAYWVHNLIIEKKIE 73
           +F  ++R +    +S++ P    F++V       I   +   ++++   +H  +I+    
Sbjct: 12  KFISSIRLYNS-FASQLSPTFHAFSNVDSLVSALITAISTCSSISYCRALHCRVIKSVNY 70

Query: 74  LNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM 133
            +  +   L+  Y + G  + A E+FD +   D+  WN++ISG +          +  +M
Sbjct: 71  NHGFIGDQLVSSYVELGCTKDALELFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRM 130

Query: 134 EM-FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAG 192
                + P+ +T + +++AC+  G ++ G K    +  +  +  +++   ++++L G+ G
Sbjct: 131 RFEMGLKPNEVTVIPVVSACAGVGELDVG-KCIHGIAVKSGMLLEVKVVNSLINLYGKCG 189

Query: 193 HIEEAYGLITSMTMEPDVVVWRALLS 218
            +E A  L   M+++  +V W ++++
Sbjct: 190 CLEAACCLFEGMSVQ-SLVSWNSMVA 214


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  333 bits (854), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 166/412 (40%), Positives = 239/412 (58%), Gaps = 3/412 (0%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P +D+V++ SMI  + +    +EAL+ +  M    ++PD F F+S+   CA L A     
Sbjct: 452 PAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGK 511

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H  +++  +  +     +L++MY+KCG I  A  +F+ +    +  W+AMI G+A HG
Sbjct: 512 QIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHG 571

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
               A  +F +M    +LP+ IT + +L+AC+H GLV E R++F  M   + I P  EHY
Sbjct: 572 HGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHY 631

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISR 238
             MVD+LGR G ++EA  L+  M  +    VW ALL A R  K +ELG  A   ++ +  
Sbjct: 632 ACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEP 691

Query: 239 LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
              G ++LL+N+Y     WD    VR  MK   V+K  G SW+EL   ++ F  GDRSHP
Sbjct: 692 EKSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHP 751

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
            ++ I   L  L +R  S G++P  E  L DV + EKE  L+HHSEKLA+A+G++ T PG
Sbjct: 752 RSKEIYVKLDDLRERLTSAGYVPMIETDLHDVEQIEKEQLLWHHSEKLAVAFGLIATPPG 811

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             IR+ KNLR+C DCH+  K IS++  R IIVRD  RFH F  G CSCGDYW
Sbjct: 812 APIRVKKNLRVCIDCHTAFKFISKVASREIIVRDINRFHHFRDGSCSCGDYW 863



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 150/340 (44%), Gaps = 56/340 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  D+VSWN++I G V + + D AL+   +M S +V P  FT +S +  CA +G +   
Sbjct: 249 IPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLG 308

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ +++  +E +  +   LIDMYSKCG +Q A+ VFD +   DV VWN++ISG +  
Sbjct: 309 RQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNC 368

Query: 121 GLAADASAIFTKM----------------------------EMFNVLP-------DSITF 145
           G   +A ++FT M                            E  + +        D    
Sbjct: 369 GYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVA 428

Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
             LL +   C L+E+  K F+   +       L  Y +M+    + G  EEA  +   M 
Sbjct: 429 NSLLDSYGKCCLLEDAAKVFEVCPAE-----DLVAYTSMITAYSQYGLGEEALKMYLRMQ 483

Query: 206 ---MEPDVVVWRALLSACRTFKRLELGEVAIVNI------SRLMGGDYVLLSNMYCYLKR 256
              ++PD  ++ +L +AC      E G+   V++      S +  G+   L NMY     
Sbjct: 484 DRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNS--LVNMYAKCGS 541

Query: 257 WDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
            D A  +   +  +G+      SW  + G + Q   G ++
Sbjct: 542 IDDASCIFNEISWRGI-----VSWSAMIGGLAQHGHGRKA 576



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 121/257 (47%), Gaps = 42/257 (16%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFF--------------------------------- 29
           + D+VSW+++I G+V+N R +EAL  +                                 
Sbjct: 110 EPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQ 169

Query: 30  -------REMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAAL 82
                   EM+S+ + P++F+ ++V+  CA L   N+   VH  +I+   + +   + AL
Sbjct: 170 IHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANAL 229

Query: 83  IDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDS 142
           +DMY+K G  + A  VF  + + D+  WNA+I+G  +H     A  +  KM  + V P  
Sbjct: 230 LDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSM 289

Query: 143 ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
            T    L AC+  GLV+ GR+    +  +  ++P       ++D+  + G +++A  ++ 
Sbjct: 290 FTLSSALKACAAIGLVKLGRQLHSALM-KMDMEPDSFVGVGLIDMYSKCGLLQDAR-MVF 347

Query: 203 SMTMEPDVVVWRALLSA 219
            +    DV+VW +++S 
Sbjct: 348 DLMPXKDVIVWNSIISG 364



 Score = 45.4 bits (106), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 79/186 (42%), Gaps = 40/186 (21%)

Query: 83  IDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDS 142
           +++YSKC   ++A+++       D+  W+A+ISG   +G   +A   + +M +     + 
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 143 ITFLGLLTACSHCGLVEEGRK-----YFDHMRS------RYSIQPQL--------EHYG- 182
            TF  +L  CS    +E G++         M S       +S+   L        E+YG 
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 183 -------------------AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTF 223
                              A++D+  ++G  E A  +   +  +PD+V W A+++ C   
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIP-KPDIVSWNAVIAGCVLH 267

Query: 224 KRLELG 229
           ++ +L 
Sbjct: 268 EKNDLA 273


>gi|302805077|ref|XP_002984290.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
 gi|300148139|gb|EFJ14800.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
          Length = 448

 Score =  333 bits (854), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 161/413 (38%), Positives = 246/413 (59%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KD ++WN+++  + ++    EAL  F+ M    V+    TF SV+  CA   AL   
Sbjct: 37  IPCKDAITWNAIVTAYAQDGYGKEALEIFQRMQQEGVKTGSATFISVLEACASTSALALG 96

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  ++   ++   I++ AL++MY+KCGK+  A+EVFD ++  DV  W A+++G A H
Sbjct: 97  RVIHQNLVANGLDRELIVATALVNMYAKCGKLVEAREVFDQMEGMDVVAWTAIVAGSAQH 156

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   ++  +  +ME+  + P+++TFL L+ ACSH G ++E R  F  M + +   P  EH
Sbjct: 157 GHIEESKDLMRRMELEGIKPNNVTFLSLVFACSHSGYLDEARDCFIAM-ADHGFFPLPEH 215

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFK---RLELGEVAIVNIS 237
           +  ++DLLGR G +EEA  +I +M  EP +  W  +LSACR  K   R E+       I 
Sbjct: 216 FRCVIDLLGRGGRLEEAQEVIDTMPFEPGLTAWLTMLSACRLQKDVLRAEIAAEKCYEIE 275

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 Y+L+SN+Y  L+RWD  + VR +M+++GV+K  G S +E+   +H+F A ++SH
Sbjct: 276 PTRPSAYLLMSNLYAALERWDDVKKVRRLMERRGVKKEPGLSCIEVKNRLHEFGAANKSH 335

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+   I + L  L    K  G++P T LVL +V EE K+  L+HHSE+LA+ YG++ T P
Sbjct: 336 PQKDLIYEELRKLTLEIKEAGYVPDTSLVLHNVDEETKQATLFHHSERLAVVYGLINTPP 395

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT + +  NLR+C DCH+  K IS +  R I+VRD  RFH F  G CSC DYW
Sbjct: 396 GTSLCVVNNLRMCSDCHTAFKYISTISNREIVVRDANRFHTFATGGCSCKDYW 448



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 44/193 (22%)

Query: 67  IIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
           ++EK  +E   ++  +L++MY +C  +  A+ VF+ +   D   WNA+++  A  G   +
Sbjct: 1   MVEKVGLEAETVVGTSLVNMYGRCHSLGNARLVFERIPCKDAITWNAIVTAYAQDGYGKE 60

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTAC--------------------------------- 152
           A  IF +M+   V   S TF+ +L AC                                 
Sbjct: 61  ALEIFQRMQQEGVKTGSATFISVLEACASTSALALGRVIHQNLVANGLDRELIVATALVN 120

Query: 153 --SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME--- 207
             + CG + E R+ FD M     +      + A+V    + GHIEE+  L+  M +E   
Sbjct: 121 MYAKCGKLVEAREVFDQMEGMDVVA-----WTAIVAGSAQHGHIEESKDLMRRMELEGIK 175

Query: 208 PDVVVWRALLSAC 220
           P+ V + +L+ AC
Sbjct: 176 PNNVTFLSLVFAC 188


>gi|414883628|tpg|DAA59642.1| TPA: hypothetical protein ZEAMMB73_113196, partial [Zea mays]
          Length = 635

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 164/395 (41%), Positives = 244/395 (61%), Gaps = 3/395 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D VSW+++IGG+V+    + AL  F+ M++  V+ ++    + +   A+LG L   
Sbjct: 225 MPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAAQLGLLEQG 284

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            +VH ++    + ++  L AALIDMYSKCG +  AKEVFD + R DV  WN+MI G+A H
Sbjct: 285 KFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATH 344

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  DA  +F K       P SITF+G+L ACS  GLV+EGR+YF  M  +Y I+ ++EH
Sbjct: 345 GLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEH 404

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG MVDLL RAG ++EA  LI  M + PD V+W  +LSAC+    ++LG      ++ + 
Sbjct: 405 YGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIELD 464

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLL+++Y   K+WD    VR++M  +G  KS G S +E  G++H+F  GD +H
Sbjct: 465 PAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDMNH 524

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            ++  I  +L ++ +R    G++P    VL D+ +EEK   +  HSE+LA+AYG +    
Sbjct: 525 KDSARIYNMLCTINRRLAEAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVVEA 584

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRD 392
           G+ IRI KNL +C DCH + KM++++  R I+VRD
Sbjct: 585 GSPIRIVKNLSVCGDCHEFSKMVTKVFGREIVVRD 619



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 2/142 (1%)

Query: 81  ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP 140
           A++  Y + G + +A+EVFD +   D   W+ +I G    G    A  +F  M    V  
Sbjct: 204 AVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKA 263

Query: 141 DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL 200
           +    +  L+A +  GL+E+G K+   +  R  +   +    A++D+  + G +  A  +
Sbjct: 264 NEAAIVTALSAAAQLGLLEQG-KFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEV 322

Query: 201 ITSMTMEPDVVVWRALLSACRT 222
             +M    DV  W +++    T
Sbjct: 323 FDAMPRR-DVFAWNSMICGLAT 343


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 173/416 (41%), Positives = 251/416 (60%), Gaps = 6/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KD+V+W +M+ G+ +NA   +AL  FR +    VE D+ T   VI  CA+LGA  +A
Sbjct: 202 LPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYA 261

Query: 61  YWVHNLIIEKKIEL--NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
            W+ ++       +  N ++ +ALIDMYSKCG ++ A +VF  ++  +V  +++MI G A
Sbjct: 262 NWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFA 321

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           IHG A  A  +F  M    V P+ +TF+G+LTACSH GLV++G++ F  M   Y + P  
Sbjct: 322 IHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTA 381

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           E Y  M DLL RAG++E+A  L+ +M ME D  VW ALL A       ++ E+A   +  
Sbjct: 382 ELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASKRLFE 441

Query: 239 LMG---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELA-GVIHQFKAGD 294
           L     G+Y+LLSN Y    RWD    VR+++++K ++K+ G SW+E   G+IH+F AGD
Sbjct: 442 LEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAKNGMIHKFVAGD 501

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
            SHP+   I K L  L++R K  G+ P    +   +++ EK   L  HSEKLALA+G+L 
Sbjct: 502 VSHPKINEIKKELNDLLERLKGIGYQPNLSSLPYGINDREKRLLLMAHSEKLALAFGLLS 561

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T  G+ I+I KNLRIC DCH  +   S++  R I+VRD  RFH F  G CSC ++W
Sbjct: 562 TDVGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNTRFHHFLNGACSCSNFW 617



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 108/234 (46%), Gaps = 41/234 (17%)

Query: 8   SWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCAR-----LGALNHA-- 60
           +W ++I  +       +AL F+  M   +V P  FTF+++   CA      LGA  HA  
Sbjct: 76  AWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQT 135

Query: 61  ---------YWVHNLIIEKKI----------------ELNFILSAALIDMYSKCGKIQMA 95
                     +V+N +I+  +                E + I    LI  Y++ G ++ A
Sbjct: 136 LLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAA 195

Query: 96  KEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHC 155
           +++FD +   D+  W AM++G A + +  DA  +F ++    V  D +T +G+++AC+  
Sbjct: 196 RDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQL 255

Query: 156 GLVEEGRKYFDHMR-----SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
           G      KY + +R     S + +   +    A++D+  + G++EEAY +   M
Sbjct: 256 G----ASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGM 305



 Score = 44.7 bits (104), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 4/170 (2%)

Query: 53  RLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQM---AKEVFDTVQRNDVSV 109
           R  +LN A  VH  I  K ++ +  +   L+ + +    + +    + +F  +   +   
Sbjct: 17  RCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHTPNPFA 76

Query: 110 WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169
           W A+I   A+ G  + A + ++ M    V P S TF  L +AC+       G +      
Sbjct: 77  WTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQTL 136

Query: 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                   L    A++D+  + G +  A  +   M  E DV+ W  L+ A
Sbjct: 137 LLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMP-ERDVISWTGLIVA 185


>gi|115476560|ref|NP_001061876.1| Os08g0434000 [Oryza sativa Japonica Group]
 gi|42407498|dbj|BAD10615.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|42409483|dbj|BAD09839.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623845|dbj|BAF23790.1| Os08g0434000 [Oryza sativa Japonica Group]
          Length = 601

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 171/416 (41%), Positives = 245/416 (58%), Gaps = 6/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK--VEPDKFTFASVIYGCARLGALN 58
           MP +D ++WN +I  + RN R  +AL+ F  M   +   EPD  T   ++  C  LGAL+
Sbjct: 186 MPVRDTIAWNVLITCYTRNRRTKDALKLFDAMRGGENGAEPDDVTCILLLQACTSLGALD 245

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               V    ++        +  +LI MY+KCG +  A +VF    +  V  W+AMISG+A
Sbjct: 246 FGEKVWEYAVDHGYGGELKVRNSLITMYTKCGCVDKAYQVFCETPKKSVVTWSAMISGLA 305

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            +G   DA + F +M    V PD  TF G+L+ACSH GLV+EG K+FD M   Y ++P +
Sbjct: 306 SNGFGKDAISAFEEMGRSGVAPDEQTFTGVLSACSHSGLVDEGFKFFDIMCYEYQLKPNV 365

Query: 179 EHYGAMVDLLGRAGHIEEAYGLIT-SMTMEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
            HYG MVDL+GRAG +++AY L+   M + PD  +WR LL ACR    ++LGE  I ++ 
Sbjct: 366 HHYGCMVDLMGRAGLLDQAYELVVKDMRVAPDATIWRTLLGACRIHGHIDLGERVINHLI 425

Query: 238 RL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294
            L     GDYVLL N Y  ++ W     VR++MK+KG++ + G + +EL G IH+F A D
Sbjct: 426 ELKAQQAGDYVLLLNTYAAVEDWGKVAEVRKLMKEKGIQTTPGCTTVELNGEIHEFIAAD 485

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
            SHP    I + L  + +  +  G++P     L D+  E KE  L +HSEKLA+A+ +L 
Sbjct: 486 ASHPRKAEIYEKLDEINKHLRIAGYVPNVSSELHDLDSEGKECALAYHSEKLAIAFALLV 545

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T     IR++KNLR+C DCH++ K+ S +  R++IVRDR RFH F+   CSC DYW
Sbjct: 546 TPQHRPIRLAKNLRVCVDCHNFTKVFSGVYHRLVIVRDRTRFHHFKEFQCSCNDYW 601



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 101/209 (48%), Gaps = 7/209 (3%)

Query: 13  IGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKI 72
           +   +R+ R  +ALRF R   +     + F+ + V+  C    AL HA  +H  ++ +  
Sbjct: 100 LNAILRSLRGPDALRFLRRARALGRRGNAFSLSIVLGHCR---ALAHARQLHANVVAEGH 156

Query: 73  ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTK 132
             + +L+ +L+  Y+ CG    A++VFD +   D   WN +I+    +    DA  +F  
Sbjct: 157 SPDALLATSLVSSYAACGDGDSARKVFDEMPVRDTIAWNVLITCYTRNRRTKDALKLFDA 216

Query: 133 ME--MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGR 190
           M        PD +T + LL AC+  G ++ G K +++    +    +L+   +++ +  +
Sbjct: 217 MRGGENGAEPDDVTCILLLQACTSLGALDFGEKVWEYAVD-HGYGGELKVRNSLITMYTK 275

Query: 191 AGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            G +++AY +    T +  VV W A++S 
Sbjct: 276 CGCVDKAYQVFCE-TPKKSVVTWSAMISG 303


>gi|125599411|gb|EAZ38987.1| hypothetical protein OsJ_23405 [Oryza sativa Japonica Group]
          Length = 531

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 173/418 (41%), Positives = 260/418 (62%), Gaps = 19/418 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           +PD+ +VSWN+ +   V N     AL  FREM   +++ PD +T  SV+   A LG    
Sbjct: 125 IPDRSLVSWNTAVDALVGNGDHLAALDLFREMQRDTELAPDAYTVQSVL--GAELGGDGD 182

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
                     + +  + +++ +L+D+Y KCG +++A++VFD +   D++ WN MI  +A 
Sbjct: 183 G---------EAVSRDMLINNSLVDLYGKCGALELAQQVFDRMPARDLASWNVMILTLAN 233

Query: 120 HGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           HG   ++  +F +M ++  + P++ITF+ +L+AC+H GLVEEGR+YF  M  +Y I+P++
Sbjct: 234 HGRVCESVELFDRMTQVEKMAPNAITFVAVLSACNHGGLVEEGRRYFAMMVDQYRIKPRI 293

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA-CRTFKRLELGE----VAI 233
           EHYG MVDLL RAG IEEA  ++  M   PD ++WR+LL A C+    LEL E    +A+
Sbjct: 294 EHYGCMVDLLARAGFIEEALDIVAGMNCRPDAIIWRSLLDACCKKNAGLELTEAMAKLAL 353

Query: 234 VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
                 + G YVLLS +Y   +RW+    VR +M ++GV+K  G S +E+ G++HQF AG
Sbjct: 354 EVPDDAVSGVYVLLSRVYASAQRWNDVGMVRRLMVEEGVKKEPGFSSIEMDGLVHQFVAG 413

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLP-ATELVLMDVSEEEKEGNLYHHSEKLALAYGI 352
           D SHP+++AI + L  +  +  S G+ P  +E  L+   +  K   L  HSE+LA+++G+
Sbjct: 414 DTSHPQSEAIYEKLDEIQLKLTSAGYKPDLSEAPLVASIDNAKGAALRLHSERLAISFGL 473

Query: 353 LKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           L  +PG  IRI KNLR+C DCH+  K+IS+L    IIVRDRIRFH F+ G CSC DYW
Sbjct: 474 LNATPGAPIRILKNLRVCKDCHTISKLISKLYGVEIIVRDRIRFHHFKDGSCSCKDYW 531



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 36/227 (15%)

Query: 25  ALRFFREMLSSKVEPDK-FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNF-ILSAAL 82
           AL  FR + S+   P    +  +V+   A L AL     +H L  +  +  +  +++ +L
Sbjct: 46  ALLLFRSLQSTPSPPPPHVSLPAVLSAAAFLSALPEGRQLHALAAKLGLAPSHTVVANSL 105

Query: 83  IDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVL-PD 141
           + +YS CG    A ++F  +    +  WN  +  +  +G    A  +F +M+    L PD
Sbjct: 106 LHLYSSCGLPGAALDLFRRIPDRSLVSWNTAVDALVGNGDHLAALDLFREMQRDTELAPD 165

Query: 142 SITFLGLLTA------------------------CSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           + T   +L A                           CG +E  ++ FD M +R      
Sbjct: 166 AYTVQSVLGAELGGDGDGEAVSRDMLINNSLVDLYGKCGALELAQQVFDRMPAR-----D 220

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMT----MEPDVVVWRALLSAC 220
           L  +  M+  L   G + E+  L   MT    M P+ + + A+LSAC
Sbjct: 221 LASWNVMILTLANHGRVCESVELFDRMTQVEKMAPNAITFVAVLSAC 267


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 165/415 (39%), Positives = 252/415 (60%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML--SSKVEPDKFTFASVIYGCARLGALN 58
           MPDK++VSW++MI  + +N    +AL  F+ M+  +    P+  T  SV+  CA L AL 
Sbjct: 240 MPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALE 299

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
           H   VH  ++ + ++    +   LI MY +CG+I   + VFD +++ DV  WN++IS   
Sbjct: 300 HGKLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYG 359

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HGL   A  IF  M    V P  ITF+ +L ACSH GLVEE +  F+ M ++Y I P++
Sbjct: 360 MHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRM 419

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           EHY  MVD+LGRA  ++EA  LI +M  +P   VW +LL +CR    +EL E A   +  
Sbjct: 420 EHYACMVDILGRANRLDEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVELAERASAMLFE 479

Query: 239 L---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L     G+YVLLS++Y   + W+    VR+ ++ +G++K    SW+E+   I+   + + 
Sbjct: 480 LEPKNAGNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQKIPSCSWIEVKRKIYSLVSIEE 539

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
            +P+ + +   L +L+   K++G++P T +V  D+ EEEKE  +  HS KLA+A+G++ T
Sbjct: 540 YNPQIEELCAFLITLLTEIKNQGYVPQTNVVTYDLDEEEKERIVLGHSGKLAVAFGLINT 599

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           S G  IRIS NLR+C DCH+++K +S+   R I++RD  RFH F+ G+CSCGDYW
Sbjct: 600 SKGEIIRISNNLRLCEDCHAFMKFVSKFTNREILLRDVNRFHCFKDGVCSCGDYW 654



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 115/251 (45%), Gaps = 15/251 (5%)

Query: 2   PDKDVVSWNS--MIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           P KD+ S N+  +I    R     +A+    ++L  +  P K TF  +I  C    +L+ 
Sbjct: 37  PTKDIKSNNNDDLIQSLCRGGNLKQAV----QLLCCEPNPTKKTFELLINSCIEQNSLSD 92

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              VH+ ++   ++ +  L+  LI+MY   G +  A +VFD  +   + VWNA+   +A+
Sbjct: 93  GVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDETREKTIFVWNAIFRALAM 152

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTAC-----SHCGLVEEGRKYFDHMRSRYSI 174
                D   ++ +M    +  +  T+  +L AC     S C L  +G++   H+  R+  
Sbjct: 153 ASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPL-RKGKEIHAHIL-RHGY 210

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIV 234
           +  +     ++D+  R G++  A  +  +M  + ++V W A++ AC     + +  + + 
Sbjct: 211 EGHVHVMTTLLDVYARFGYVSYASSVFGAMP-DKNIVSWSAMI-ACYAKNEMPMKALELF 268

Query: 235 NISRLMGGDYV 245
            I  L   D V
Sbjct: 269 QIMMLEACDTV 279


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 160/413 (38%), Positives = 253/413 (61%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KD+VSWN+MIGG+ +N   +EAL  F +M   + +PD  T A V+  CA L AL+  
Sbjct: 458 IPVKDIVSWNTMIGGYSQNLLPNEALELFLDM-QKQFKPDDITMACVLPACAGLAALDKG 516

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I+ +    +  ++ AL+DMY+KCG + +A+ +FD + + D+  W  MI+G  +H
Sbjct: 517 REIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMH 576

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A + F +M +  + PD  +F  +L ACSH GL+ EG K+F+ MR+   ++P+LEH
Sbjct: 577 GFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEH 636

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  +VDLL R G++ +AY  I SM ++PD  +W  LLS CR    ++L E    +I  L 
Sbjct: 637 YACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELE 696

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             +   YV+L+N+Y   ++W+  + +R+ M+K+G +++ G SW+E+ G  + F AG+  H
Sbjct: 697 PDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKH 756

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+A+ ID +L  L  + ++E +      VL++  + EKE     HSEK A+A+GIL   P
Sbjct: 757 PQAKKIDVLLSKLTMQMQNEDYSSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPP 816

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  +R+SKN R+C DCH   K +S+  +  I++RD  RFH F+ GLCSC D +
Sbjct: 817 GRTVRVSKNRRVCGDCHEMGKFMSKTTKMEIVLRDSNRFHHFKDGLCSCRDAF 869



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 116/219 (52%), Gaps = 3/219 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D  +VSW S+I  +VR   + +A+  F EM S  V PD +T  S+++ CA   +L+  
Sbjct: 357 MGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKG 416

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ +I+  +  N  ++ ALI+MY+KCG ++ A+ VF  +   D+  WN MI G + +
Sbjct: 417 RDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQN 476

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            L  +A  +F  M+     PD IT   +L AC+    +++GR+   H+  R      L  
Sbjct: 477 LLPNEALELFLDMQK-QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFS-DLHV 534

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A+VD+  + G +  A  L+  M  + D++ W  +++ 
Sbjct: 535 ACALVDMYAKCGLLVLAQ-LLFDMIPKKDLISWTVMIAG 572



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 108/217 (49%), Gaps = 2/217 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + + DVVSWNSMI G V N      L  F +ML   VE D  T  SV+  CA +G L+  
Sbjct: 256 LSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLG 315

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++       + S  L+DMYSKCG +  A EVF  +    +  W ++I+     
Sbjct: 316 RALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVRE 375

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL +DA  +F +M+   V PD  T   ++ AC+    +++GR    ++  +  +   L  
Sbjct: 376 GLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYV-IKNGMGSNLPV 434

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             A++++  + G +EEA  L+ S     D+V W  ++
Sbjct: 435 TNALINMYAKCGSVEEAR-LVFSKIPVKDIVSWNTMI 470



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 105/219 (47%), Gaps = 3/219 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M DK V  WN ++  + +   F E++  F++M    V  + +TF  V+   A LG +   
Sbjct: 156 MNDK-VFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKEC 214

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +++     N  +  +LI  Y K G ++ A  +FD +   DV  WN+MI+G  ++
Sbjct: 215 KRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVN 274

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G + +   IF +M +  V  D  T + +L AC++ G +  GR        +     ++  
Sbjct: 275 GFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRA-LHGFGVKACFSEEVVF 333

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              ++D+  + G++  A  +   M  +  +V W ++++A
Sbjct: 334 SNTLLDMYSKCGNLNGATEVFVKMG-DTTIVSWTSIIAA 371



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 91/178 (51%), Gaps = 2/178 (1%)

Query: 43  TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV 102
           ++ SV+  CA   +L     VH++II   I ++  L A L+ MY  CG +   +++FD +
Sbjct: 96  SYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKI 155

Query: 103 QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR 162
             + V +WN ++S  A  G   ++ ++F KM+   V+ +  TF  +L   +  G V+E +
Sbjct: 156 MNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECK 215

Query: 163 KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
           +   ++  +           +++    + G +E A+ L   ++ EPDVV W ++++ C
Sbjct: 216 RVHGYVL-KLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELS-EPDVVSWNSMINGC 271


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 164/409 (40%), Positives = 242/409 (59%), Gaps = 3/409 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +VVSW ++I G  +     ++L+FF +M    V P+  +   ++  CA L  L     +H
Sbjct: 505 NVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIH 564

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
            L I      +  ++ ALIDMYSK   ++ A +VF  +Q   ++ WN MI G AI GL  
Sbjct: 565 CLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGK 624

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           +A ++F +M+   V PD+ITF  LL+AC + GL+ EG KYFD M + Y I P+LEHY  M
Sbjct: 625 EAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCM 684

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---MG 241
           VDLLGRAG+++EA+ LI +M ++PD  +W ALL +CR  K L+  E A  N+ +L     
Sbjct: 685 VDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNS 744

Query: 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
            +Y+L+ N+Y    RW+  +++RE+M   GVR  Q  SW+++   +H F + ++ HP+A 
Sbjct: 745 ANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAG 804

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
            I   L  L+   K  G++P    V  ++ E EK+  L  H+EKLA+ YG++K   G  I
Sbjct: 805 KIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPI 864

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           R+ KN RIC DCHS  K IS +  R + +RD +RFH F  G CSC D+W
Sbjct: 865 RVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 913



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 132/276 (47%), Gaps = 4/276 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+ + + WN  I   +++ +  + +  FR+M  S ++ +  T   V+  C ++GALN A
Sbjct: 194 MPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAA 253

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +    ++ +  L   LI MYSK GK+++A+ VFD+++  + S WN+MIS  A  
Sbjct: 254 KQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAAL 313

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA ++F ++E  ++ PD +T+  LL+     G  EE       M+     +P    
Sbjct: 314 GFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGE-GFKPNSSS 372

Query: 181 YGAMVDLLGRAGHI---EEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
             +++  +   G +   +E +G +     + DV V  +L+        L   +    N+ 
Sbjct: 373 MTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMK 432

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVR 273
                 +  L + Y +   ++ A  +   M+K+G++
Sbjct: 433 NRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIK 468



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 107/229 (46%), Gaps = 4/229 (1%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D+V+WN ++ G   +   +E L   + M     +P+  +  SV+   + LG LN     H
Sbjct: 334 DIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETH 393

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             ++    + +  +  +LIDMY K   +  A+ VFD ++  ++  WN+++SG +  G+  
Sbjct: 394 GYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFE 453

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           DA  +  +ME   + PD +T+ G+++  +  G  +E      H      + P +  + A+
Sbjct: 454 DALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVL-HQTKSLGLTPNVVSWTAL 512

Query: 185 VDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSACRTFKRLELGE 230
           +    +AG+  ++      M  E   P+      LL AC +   L+ G+
Sbjct: 513 ISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGK 561



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 105/256 (41%), Gaps = 46/256 (17%)

Query: 4   KDVVSWNSMIGGFVRNA-RFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++ + WNS +  F  +A      L  F+E+    V  D   ++  +  C R+  +     
Sbjct: 95  RNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGME 154

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWN-AMISGVAIHG 121
           +H  +I++  +L+  L  AL++ Y +C  ++ A +VF  +   +  +WN A+I  +    
Sbjct: 155 IHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEK 214

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTAC----------------------------- 152
           L      +F KM+   +  ++ T + +L AC                             
Sbjct: 215 LQKGVE-LFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCN 273

Query: 153 ------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL---ITS 203
                 S  G +E  R+ FD M +R +       + +M+      G + +A+ L   + S
Sbjct: 274 PLISMYSKNGKLELARRVFDSMENRNT-----SSWNSMISSYAALGFLNDAWSLFYELES 328

Query: 204 MTMEPDVVVWRALLSA 219
             M+PD+V W  LLS 
Sbjct: 329 SDMKPDIVTWNCLLSG 344



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 102/258 (39%), Gaps = 70/258 (27%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++++ +WNS++ G+     F++ALR   +M    ++PD  T+  +I G A  G     
Sbjct: 431 MKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWG----- 485

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMA--KEVFDTVQRNDVSVWNAMISGVA 118
                                       CGK  +A   +        +V  W A+ISG +
Sbjct: 486 ----------------------------CGKEALAVLHQTKSLGLTPNVVSWTALISGSS 517

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
             G   D+   F +M+   V+P+S +   LL AC+   L+++G++    +  R      +
Sbjct: 518 QAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKE-IHCLSIRNGFIEDV 576

Query: 179 EHYGAMVDLLGRAGHIEEA------------------------YGL----------ITSM 204
               A++D+  ++  ++ A                        +GL          +  +
Sbjct: 577 FVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKV 636

Query: 205 TMEPDVVVWRALLSACRT 222
            + PD + + ALLSAC+ 
Sbjct: 637 GVGPDAITFTALLSACKN 654



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY- 61
           +K + SWN MI GF       EA+  F EM    V PD  TF +++  C   G +   + 
Sbjct: 604 NKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWK 663

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIH 120
           +  ++I + +I         ++D+  + G +  A ++  T+  + D ++W A++    IH
Sbjct: 664 YFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIH 723


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 166/413 (40%), Positives = 246/413 (59%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  ++ VSWN++I G  R    ++AL  F+ ML     P  F++AS+   C+  G L   
Sbjct: 213 LESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQG 272

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH  +I+   +L       L+DMY+K G I  A+++FD + + DV  WN++++  A H
Sbjct: 273 KWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQH 332

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A   F +M    + P+ I+FL +LTACSH GL++EG  Y++ M+ +  I  +  H
Sbjct: 333 GFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMK-KDGIVLEAWH 391

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  +VDLLGRAG +  A   I  M +EP   +W+ALL+ACR  K  ELG  A  ++  L 
Sbjct: 392 YVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELD 451

Query: 241 G---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G +V+L N+Y    RW+ A  VR+ MK+ GV+K    SW+E+   IH F A D  H
Sbjct: 452 PDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERH 511

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I +    ++ + K  G++P T  V++ V ++E+E NL +HSEK+ALA+ +L T P
Sbjct: 512 PQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPP 571

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G+ I I KN+R+C DCHS IK+ S+ + R IIVRD  RFH F+ G CSC DYW
Sbjct: 572 GSTIHIKKNIRVCGDCHSAIKLASKAVGREIIVRDTNRFHHFKDGACSCKDYW 624



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 118/223 (52%), Gaps = 10/223 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA--RLGALN 58
           MP++D V+W ++I G+ ++ R  +AL  F +ML     P++FT +SVI   A  R G   
Sbjct: 112 MPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCG 171

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGV 117
           H   +H   ++   + N  + +AL+D+Y++ G +  A+ VFD ++ RNDVS WNA+I+G 
Sbjct: 172 HQ--LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS-WNALIAGH 228

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           A       A  +F  M      P   ++  L  ACS  G +E+G+    +M    S +  
Sbjct: 229 ARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIK--SGEKL 286

Query: 178 LEHYG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +   G  ++D+  ++G I +A  +   +    DVV W +LL+A
Sbjct: 287 VAFAGNTLLDMYAKSGSIHDARKIFDRLAKR-DVVSWNSLLTA 328



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 15/215 (6%)

Query: 23  DEALRFFREMLSSKVEP-DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAA 81
           DE+L+F    L     P D+  + +++  C     L     VH  +I+     + +++  
Sbjct: 32  DESLKFPSNDLEGSYIPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNT 91

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
           L++MY+KCG ++ A++VFD +   D   W  +ISG + H    DA  +F +M  F   P+
Sbjct: 92  LLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPN 151

Query: 142 SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE---HYG-AMVDLLGRAGHIEEA 197
             T   ++ A +      E R    H    + ++   +   H G A++DL  R G +++A
Sbjct: 152 EFTLSSVIKAAA-----AERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDA 206

Query: 198 YGLITSMTMEPDVVVWRALLSA----CRTFKRLEL 228
             +  ++    D V W AL++     C T K LEL
Sbjct: 207 QLVFDALESRND-VSWNALIAGHARRCGTEKALEL 240


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 170/405 (41%), Positives = 238/405 (58%), Gaps = 4/405 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP K  VSWN++I G  R    + AL    +M     +P  FT++SV+  CA +GAL   
Sbjct: 250 MPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQG 309

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH  +I+  ++L   +   L+DMY+K G I  AK VFD + + DV  WN M++G A H
Sbjct: 310 KWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQH 369

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +    F +M    + P+ I+FL +LTACSH GL++EG  YF+ M+ +Y ++P + H
Sbjct: 370 GLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMK-KYKVEPDVPH 428

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y   VDLLGR G ++ A   I  M +EP   VW ALL ACR  K +ELG  A      L 
Sbjct: 429 YVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELD 488

Query: 241 ---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G  +LLSN+Y    RW     VR++MK+ GV+K    SW+E+   +H F A D +H
Sbjct: 489 PHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETH 548

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + I      +  + K  G++P T  VL+ V ++E+E  L +HSEKLALA+ +L T  
Sbjct: 549 PRIKEIRGKWEEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPT 608

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGG 402
           G+ IRI KN+R+C DCH+ IK +S+++ R IIVRD  RFHRF  G
Sbjct: 609 GSPIRIKKNIRVCGDCHAAIKFVSKVVDREIIVRDTNRFHRFRDG 653



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 118/224 (52%), Gaps = 10/224 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD+V+W ++I GF +N R  +AL  F +ML    +P+ FT +S++        L+  
Sbjct: 149 MPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPG 208

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++   + +  + +AL+DMY++CG +  A+  FD +       WNA+ISG A  
Sbjct: 209 TQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARK 268

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +  KM+  N  P   T+  +L+AC+  G +E+G+    HM     I+  L+ 
Sbjct: 269 GEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHM-----IKSGLKL 323

Query: 181 YG----AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
                  ++D+  +AG I++A  +   + ++PDVV W  +L+ C
Sbjct: 324 IAFIGNTLLDMYAKAGSIDDAKRVFDRL-VKPDVVSWNTMLTGC 366



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 3/182 (1%)

Query: 39  PDKFTFASVIYGCARLGALNHAYWVHNLIIEKK-IELNFILSAALIDMYSKCGKIQMAKE 97
           PD   ++ ++  C RLG +     VH  +++   ++ + +L   +++MY+KCG +  A+ 
Sbjct: 85  PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARR 144

Query: 98  VFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL 157
           +FD +   D+  W A+I+G + +    DA  +F +M      P+  T   LL A      
Sbjct: 145 MFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHG 204

Query: 158 VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           ++ G +       +Y  Q  +    A+VD+  R GH++ A      M  + + V W AL+
Sbjct: 205 LDPGTQ-LHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSE-VSWNALI 262

Query: 218 SA 219
           S 
Sbjct: 263 SG 264



 Score = 38.1 bits (87), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 137 NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196
           +++PD   +  LL  C+  G VE+GR    H+   + +   L     +V++  + G +++
Sbjct: 82  SLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDD 141

Query: 197 AYGLITSMTMEPDVVVWRALLSA 219
           A  +   M  + D+V W AL++ 
Sbjct: 142 ARRMFDEMPTK-DMVTWTALIAG 163


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 171/413 (41%), Positives = 251/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + D + VSWN++I G+ ++   ++AL  F EM ++ +   + TF+SV+  CA   ++ HA
Sbjct: 411 LQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHA 470

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+LI +     + I+  +LID Y+KCG I+ A +VF+++   DV  WN++IS  A+H
Sbjct: 471 VQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALH 530

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +A  +F +M   ++  + +TF+ LL+ C   GLV +G   F+ M   + I+P +EH
Sbjct: 531 GRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEH 590

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  +V LLGRAG + +A   I  +   P  +VWRALLS+C   K + LG  A   +++I 
Sbjct: 591 YTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIE 650

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 YVLLSNMY      D     R+ M+  GV+K  G SW+E+ G +H F  G   H
Sbjct: 651 PHDETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSVGSADH 710

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I+ +L  L  +   EG++P   +VL DV EEEK   L+ HSE+LALAYG+  T P
Sbjct: 711 PDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPP 770

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KNLR C DCH+  K+IS++++R IIVRD  RFH FE G+CSCGDYW
Sbjct: 771 GHPIRIMKNLRSCLDCHTMFKVISKIVQREIIVRDINRFHHFEEGICSCGDYW 823



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 115/219 (52%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  DV+ W+ +I  + ++ + ++A   F  M+ S V P++F+ + V+  CA +  L   
Sbjct: 310 IPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELG 369

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +HNL I+   E    +  AL+DMY+KC  ++ + E+F ++Q  +   WN +I G    
Sbjct: 370 EQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQS 429

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A DA ++F +M   ++L   +TF  +L AC++   ++   +    +  + +       
Sbjct: 430 GFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQ-IHSLIEKSTFNNDTIV 488

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +++D   + G I +A  +  S+ +E DVV W +++SA
Sbjct: 489 CNSLIDTYAKCGFIRDALKVFESI-VECDVVSWNSIISA 526



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 112/234 (47%), Gaps = 10/234 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++ VS+ +++ G+     F+EAL  FR +     E + F   +++     + A   A
Sbjct: 108 MPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLA 167

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H    +   + N  +  ALID YS CG +  A+ VFD +   D   W AM+S  + +
Sbjct: 168 CGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSEN 227

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTA--CSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            +   A   F+KM M    P+       L A  C    L+ +G  +   +++ Y  +P +
Sbjct: 228 DIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKG-IHGCSVKTLYDTEPHV 286

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS----ACRTFKRLEL 228
              GA++D+  + G IE+A+  I  M    DV++W  L+S    +C+  +  E+
Sbjct: 287 G--GALLDMYAKCGDIEDAHA-IFEMIPHDDVILWSFLISRYAQSCQNEQAFEM 337



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 105/214 (49%), Gaps = 2/214 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD V+W +M+  +  N   + AL  F +M  +  +P+ F   S +     L +      +
Sbjct: 212 KDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGI 271

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   ++   +    +  AL+DMY+KCG I+ A  +F+ +  +DV +W+ +IS  A     
Sbjct: 272 HGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQN 331

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  +F +M    V+P+  +  G+L AC++   +E G +   ++  +   + +L    A
Sbjct: 332 EQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQ-IHNLAIKLGYESELFVGNA 390

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           ++D+  +  ++E +  + +S+  + + V W  ++
Sbjct: 391 LMDMYAKCRNMENSLEIFSSL-QDANEVSWNTII 423



 Score = 42.7 bits (99), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 7/130 (5%)

Query: 11  SMIGGFV-RNARFDEALRFFREMLSSKVEP--DKFTFASVIYGCARLGALNHAYWVHNLI 67
           S I G + RN   +EAL++  + L+S   P  D +  A  +  C   G       VH  +
Sbjct: 12  SQINGLLSRNLAANEALQWLDDELASLALPKLDSYACARFLQRCIARGDARAGRAVHARV 71

Query: 68  IEKK--IELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAIHGLAA 124
           +++    +L+   +  L++ Y+K G +  A+ +FD + +RN VS +  ++ G A+ G   
Sbjct: 72  VQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVS-FVTLMQGYALRGEFE 130

Query: 125 DASAIFTKME 134
           +A  +F +++
Sbjct: 131 EALELFRRLQ 140


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 171/418 (40%), Positives = 254/418 (60%), Gaps = 23/418 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           M  ++V++WN+M+G ++++   ++ L+ + +ML+ K V PD  T+ ++  GCA +GA   
Sbjct: 484 MSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANK- 542

Query: 60  AYWVHNLIIEKKIELNFILSA----ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
              + + II   +++  IL      A+I MYSKCG+I  A++ FD + R D+  WNAMI+
Sbjct: 543 ---LGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMIT 599

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           G + HG+   A  IF  +      PD I+++ +L+ CSH GLVEEG+ YFD M+  ++I 
Sbjct: 600 GYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNIS 659

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA--- 232
           P LEH+  MVDLLGRAGH+ EA  LI  M M+P   VW ALLSAC+T    +L E+A   
Sbjct: 660 PGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKH 719

Query: 233 IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKA 292
           + ++     G Y+LL+ MY    + D +  VR++M+ KG++KS G SW+E+   +H FKA
Sbjct: 720 LFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWMEVNNRVHVFKA 779

Query: 293 GDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGI 352
            D SHP+  AI + L  L+++    G++             E   +  HHSEKLA+A+GI
Sbjct: 780 EDVSHPQVIAIREKLDELMEKIAHLGYV-----------RTESPRSEIHHSEKLAVAFGI 828

Query: 353 LKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           +       I I KNLRIC DCH+ IK+IS +  R  ++RD +RFH F+GG CSC DYW
Sbjct: 829 MSLPAWMPIHIMKNLRICDDCHTVIKLISTVTDREFVIRDGVRFHHFKGGSCSCMDYW 886



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 116/221 (52%), Gaps = 6/221 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++DVVSWN +I    ++ R  EAL    +M    V PD  T+ S +  CARL +L   
Sbjct: 251 MPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWG 310

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
             +H  +I     ++  +++A++++Y+KCG  + AK VF +++ RN VS W  +I G   
Sbjct: 311 KQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVS-WTVLIGGFLQ 369

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD-HMRSRYSIQPQL 178
           +G  +++  +F +M    +  D      L++ C +   +  G +     ++S ++    +
Sbjct: 370 YGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVV 429

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            +  +++ +  + G+++ A  LI +   E D+V W  +++A
Sbjct: 430 SN--SLISMYAKCGNLQNAE-LIFNFMAERDIVSWTGMITA 467



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 117/263 (44%), Gaps = 37/263 (14%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D++ VSW  +IGGF++   F E++  F +M +  +  D+F  A++I GC     +     
Sbjct: 354 DRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQ 413

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQ----------------------------- 93
           +H+L ++       ++S +LI MY+KCG +Q                             
Sbjct: 414 LHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGN 473

Query: 94  --MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM-EMFNVLPDSITFLGLLT 150
              A+E FD +   +V  WNAM+     HG   D   +++ M    +V+PD +T++ L  
Sbjct: 474 IAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFR 533

Query: 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
            C+  G  + G +   H   +  +        A++ +  + G I EA      ++   D+
Sbjct: 534 GCADIGANKLGDQIIGH-TVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLS-RKDL 591

Query: 211 VVWRALLSACRTFKRLELGEVAI 233
           V W A+++    + +  +G+ AI
Sbjct: 592 VSWNAMITG---YSQHGMGKQAI 611



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 112/250 (44%), Gaps = 36/250 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE-PDKFTFASVIYGCARLGALNH 59
           MP +DV SWN+++ G+ ++ +F  AL  F  M  +    P+ FTF  V+  C  LG    
Sbjct: 118 MPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEV 177

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAK----------------------- 96
           A  +  L+ +   + +  +  AL+DM  +CG +  A                        
Sbjct: 178 ALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAK 237

Query: 97  --------EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGL 148
                   E+F ++   DV  WN +IS ++  G   +A  +   M    V PDS T+   
Sbjct: 238 SHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSS 297

Query: 149 LTACSHCGLVEEGRK-YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME 207
           LTAC+    +E G++ +   +R+   I P +    AMV+L  + G  +EA  + +S+  +
Sbjct: 298 LTACARLSSLEWGKQLHVQVIRNLPHIDPYVA--SAMVELYAKCGCFKEAKRVFSSLR-D 354

Query: 208 PDVVVWRALL 217
            + V W  L+
Sbjct: 355 RNSVSWTVLI 364



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 5/157 (3%)

Query: 42  FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT 101
           F   ++++     GAL+ A    NL+ ++  E N I    +++ Y+K G +  A E+F  
Sbjct: 61  FLQNTLLHAYLSCGALSDA---RNLLRDEITEPNVITHNIMMNGYAKLGSLSDAVELFGR 117

Query: 102 VQRNDVSVWNAMISGVAIHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEE 160
           +   DV+ WN ++SG    G   +A  IF  M +  + LP++ TF  ++ +C   G  E 
Sbjct: 118 MPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEV 177

Query: 161 GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEA 197
             +    + S++  Q   +   A+VD+L R G ++ A
Sbjct: 178 ALQLLG-LLSKFDSQDDPDVQTALVDMLVRCGAMDFA 213


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 169/412 (41%), Positives = 250/412 (60%), Gaps = 6/412 (1%)

Query: 4    KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
            +D VSWNSMI G++ +    +A+     M+    + D FTFA+V+  CA +  L     V
Sbjct: 724  RDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEV 783

Query: 64   HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
            H   +   +E + ++ +AL+DMY+KCGKI  A   F+ +   ++  WN+MISG A HG  
Sbjct: 784  HACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHG 843

Query: 124  ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
              A  IFT+M+     PD +TF+G+L+ACSH GLV+EG K+F  M   Y + P++EH+  
Sbjct: 844  QKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSC 903

Query: 184  MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC--RTFKRLELGEVA---IVNISR 238
            MVDLLGRAG +++    I +M M+P++++WR +L AC     +  ELG+ A   ++ +  
Sbjct: 904  MVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCRANGRNTELGQRAAKMLIELEP 963

Query: 239  LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
                +YVLLSNM+     W+     R  M+K  V+K  G SW+ +   +H F AGD++HP
Sbjct: 964  QNAVNYVLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCSWVNMKDGVHLFVAGDQTHP 1023

Query: 299  EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
            E + I + L  L+ + +  G++P T+  L D+  E KE  L +HSEKLA+A+ +L     
Sbjct: 1024 EKEKIYEKLKELMNKIRDAGYVPETKYALYDLELENKEELLSYHSEKLAIAF-VLTRKSE 1082

Query: 359  TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IRI KNLR+C DCH+  K IS+++ R II+RD  RFH F GG+CSCGDYW
Sbjct: 1083 LPIRIMKNLRVCGDCHTAFKYISKIVGRQIILRDSNRFHHFGGGMCSCGDYW 1134



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 2/220 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD VSWNSMI G   N RF+EA+  F  M  + + P  F+  S +  C+ LG L   
Sbjct: 517 MPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLG 576

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H    +  ++L+  +S AL+ +Y++   I   ++VF  +   D   WN+ I  +A +
Sbjct: 577 RQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKY 636

Query: 121 GLAA-DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
             +   A   F +M      P+ +TF+ +L A S   ++  G +    +  +YS+     
Sbjct: 637 EASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQ-IHALILKYSVADDNA 695

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A++   G+   +E+   + + M+   D V W +++S 
Sbjct: 696 IENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISG 735



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 15/194 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA--LN 58
           MP K++VSW+ +I G+ +N   DEA   F+ ++SS + P+ F   S +  C + G+  + 
Sbjct: 201 MPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIK 260

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKC-GKIQMAKEVFDTVQRNDVSVWNAMISGV 117
               +H  I +     + ILS  L+ MYS C G I  A  VFD ++  +   WN++IS  
Sbjct: 261 LGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVY 320

Query: 118 AIHGLAADASAIFTKMEM----FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
              G A  A  +F+ M+M     N+ P+  T   L+TA   C L + G    + M +R  
Sbjct: 321 CRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAA--CSLADCGLVLLEQMLTR-- 376

Query: 174 IQPQLEHYGAMVDL 187
               +E  G + DL
Sbjct: 377 ----IEKSGFLRDL 386



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 116/241 (48%), Gaps = 7/241 (2%)

Query: 1   MPDKDVVSWNSMIGGFVR-NARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           MP+ D VSWNS IG   +  A   +AL++F EM+ +   P++ TF +++   +    L  
Sbjct: 618 MPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGL 677

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVA 118
            + +H LI++  +  +  +  AL+  Y KC +++  + +F  + +R D   WN+MISG  
Sbjct: 678 GHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYL 737

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
             G+   A  +   M       D  TF  +L+AC+    +E G +       R  ++  +
Sbjct: 738 HSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGME-VHACAVRACLESDV 796

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
               A+VD+  + G I+ A      M +  ++  W +++S    + R   G+ A+   +R
Sbjct: 797 VVGSALVDMYAKCGKIDYASRFFELMPVR-NIYSWNSMISG---YARHGHGQKALKIFTR 852

Query: 239 L 239
           +
Sbjct: 853 M 853



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 104/232 (44%), Gaps = 14/232 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML--------SSKVEPDKFTFASVIYGCA 52
           M D++ V+ N ++ G  R  + +EA + F+EM         S  V    FT  S +    
Sbjct: 412 MYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSESLVVLLSTFTEFSNLKEGK 471

Query: 53  RLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA 112
           R G   HAY   + +++ +I +      AL++MY KC  I  A  VF  +   D   WN+
Sbjct: 472 RKGQEVHAYLFRSGLVDARISIG----NALVNMYGKCTAIDNACSVFQLMPSKDTVSWNS 527

Query: 113 MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY 172
           MISG+  +    +A + F  M+   ++P + + +  L++CS  G +  GR+       ++
Sbjct: 528 MISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGE-GFKW 586

Query: 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFK 224
            +   +    A++ L      I E   +   M  E D V W + + A   ++
Sbjct: 587 GLDLDVSVSNALLTLYAETDSINECQKVFFQMP-EYDQVSWNSFIGALAKYE 637



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +++ SWNSMI G+ R+    +AL+ F  M      PD  TF  V+  C+ +G ++  
Sbjct: 822 MPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEG 881

Query: 61  Y 61
           Y
Sbjct: 882 Y 882



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 105/234 (44%), Gaps = 12/234 (5%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE----PDKFTFASVIYGCARLGALNH 59
           ++ V+WNS+I  + R      A + F  M    VE    P+++T  S++     L     
Sbjct: 308 RNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGL 367

Query: 60  AYWVHNLI-IEKKIEL-NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
                 L  IEK   L +  + +AL++ +++ G +  AK +F  +   +    N ++ G+
Sbjct: 368 VLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGL 427

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS---- 173
           A      +A+ +F +M+   V  +S + + LL+  +    ++EG++    + +       
Sbjct: 428 ARQHQGEEAAKVFKEMKDL-VEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGL 486

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
           +  ++    A+V++ G+   I+ A  +   M    D V W +++S     +R E
Sbjct: 487 VDARISIGNALVNMYGKCTAIDNACSVFQLMP-SKDTVSWNSMISGLDHNERFE 539



 Score = 45.4 bits (106), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 9/119 (7%)

Query: 38  EPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE 97
           E D++  +S +Y        NH   +H  + +     +      LI++Y + G +  A++
Sbjct: 146 EFDRYKTSSSLYDA------NH---LHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARK 196

Query: 98  VFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
           +FD + + ++  W+ +ISG   + +  +A ++F  +    +LP+       L AC  CG
Sbjct: 197 LFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCG 255


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 165/411 (40%), Positives = 247/411 (60%), Gaps = 4/411 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYW 62
           KDV +W  M+ GF     +D A++ F +ML    ++ D      ++  C+  GAL     
Sbjct: 287 KDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRR 346

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH L I+     N  + +A+IDMY+ CG ++ AK  F  +   DV  WNAMI+G  ++G 
Sbjct: 347 VHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGY 406

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             DA  +F +M+   + PD  TF+ +L ACSH G+V EG + F HM       P L+HY 
Sbjct: 407 GTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYA 466

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG-EVA--IVNISRL 239
            ++D+LGRAG ++ AY  I +M  +PD  V+  LL ACR    ++LG E++  I  +   
Sbjct: 467 CVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPN 526

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             G YVLLSNMY     W+  +  R  ++ K ++K  G S +E+   I+ F AG++ HP+
Sbjct: 527 DAGYYVLLSNMYALAGNWEGVKMTRASLRSKRLKKDPGFSSIEINQEIYTFMAGEKDHPQ 586

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
              I+ IL  LI + K  G++P T ++L DVS++ K+  LYHHSEK+A+A+G+++T PGT
Sbjct: 587 YFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPGT 646

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI+KNLR C+DCHS  K +S++  RV++++D  RFH F+ G+CSC DYW
Sbjct: 647 IIRITKNLRTCNDCHSASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 115/219 (52%), Gaps = 4/219 (1%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P K+VVSW  +I G  +N  F EA+  FREM     +P+  T +SV+   A LG +  A 
Sbjct: 83  PCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAK 142

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            VH   +    E N  +  AL+DMYSK G + +A+++F+++   +V  WNA++SG + HG
Sbjct: 143 SVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHG 202

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEH 180
            + +A  +F  M    +L D  T + L+ A    G ++ G       +R+ Y     ++ 
Sbjct: 203 FSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIK- 261

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++D+      +++A+ + + M ++ DV  W  +L+ 
Sbjct: 262 -TALMDIYVSHNCVDDAHRVFSEMFVK-DVAAWTLMLTG 298



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 3/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++VVSWN+++ G+  +   +EA+  F  M    +  D +T  S+I     +G L   
Sbjct: 183 MSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVG 242

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  II    E +  +  AL+D+Y     +  A  VF  +   DV+ W  M++G +  
Sbjct: 243 TGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSG 302

Query: 121 GLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
                A   F KM  + N+  DSI  +G+L++CSH G +++GR+    +  +      + 
Sbjct: 303 RHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRR-VHALAIKTCFANNIF 361

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A++D+    G++E+A      M  E DVV W A+++ 
Sbjct: 362 VGSAVIDMYANCGNLEDAKRFFYGMG-EKDVVCWNAMIAG 400



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 8/197 (4%)

Query: 26  LRFFREMLSSKVE---PDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAAL 82
             F+R + S+  +   P   + AS++     L  L     +H  II   +  N  LS +L
Sbjct: 6   FNFYRHLSSNPTQRLCPLAQSHASILRKLKDLKPLQQ---IHAQIITSGLTHNTFLSNSL 62

Query: 83  IDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDS 142
           ++ Y  CG +  AK++F      +V  W  +ISG+A +    +A  +F +M M N  P++
Sbjct: 63  MNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNA 122

Query: 143 ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
           +T   +L A ++ GL+    K       R   +  +    A+VD+  + G +  A  L  
Sbjct: 123 VTISSVLPAFANLGLIRIA-KSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFE 181

Query: 203 SMTMEPDVVVWRALLSA 219
           SM+ E +VV W A++S 
Sbjct: 182 SMS-ERNVVSWNAIVSG 197



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 4/152 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +KDVV WN+MI G   N    +A+  F +M  S ++PD+ TF SV+Y C+  G +   
Sbjct: 386 MGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEG 445

Query: 61  YWVHNLIIEKKIEL-NFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             +   +++   ++ N    A +ID+  + G++  A    + +  + D  V++ ++    
Sbjct: 446 LQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACR 505

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150
           IHG       I  K  +F + P+   +  LL+
Sbjct: 506 IHGNIKLGHEISQK--IFEMEPNDAGYYVLLS 535


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 169/413 (40%), Positives = 244/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP + +VSWNSM+     N   ++ +  F  M  + + PD+ T  +++  C   G    A
Sbjct: 225 MPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQA 284

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I       + I++ AL+++Y+K G++  ++++F+ ++  D   W AM++G A+H
Sbjct: 285 ESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVH 344

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A  +F  M    V  D +TF  LL+ACSH GLVEEG+KYF+ M   Y ++P+L+H
Sbjct: 345 ACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDH 404

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MVDLLGR+G +E+AY LI SM MEP   VW ALL ACR +  +ELG+     +  L 
Sbjct: 405 YSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLD 464

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D   Y++LSN+Y     W  A  VR +MK++ + ++ G S++E    IH+F  GD+ H
Sbjct: 465 PSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLH 524

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P +  I   L  LI++ +  G  P TE VL D+ EE K   +  HSEKLA+A+G+L T  
Sbjct: 525 PRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGS 584

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  + I+KNLRIC DCHS  K  S L +R II+RD  RFH F  GLCSC DYW
Sbjct: 585 GVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 637



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 106/220 (48%), Gaps = 3/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           MP+KD+VSWNS++ G          L  F  M + S  +P++ T  SV+  CA +GAL+ 
Sbjct: 123 MPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDE 182

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H ++++  +     +  +LI+MY K G +  A ++F+ +    +  WN+M+     
Sbjct: 183 GKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNH 242

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G A     +F  M+   + PD  T + LL AC+  GL  +      ++  R      + 
Sbjct: 243 NGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIH-RCGFNADII 301

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A+++L  + G +  +  +   +  + D + W A+L+ 
Sbjct: 302 IATALLNLYAKLGRLNASEDIFEEIK-DRDRIAWTAMLAG 340



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/263 (20%), Positives = 106/263 (40%), Gaps = 38/263 (14%)

Query: 46  SVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN 105
           S+++  +   ++++   +H  +I+     +  +   L+ MY K G  + A+ +FD +   
Sbjct: 67  SLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNK 126

Query: 106 DVSVWNAMISGVAIHGLAADASAIFTKMEM-FNVLPDSITFLGLLTACSHCGLVEEGRK- 163
           D+  WN+++SG++  G        F +M       P+ +T L +++AC+  G ++EG+  
Sbjct: 127 DLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSL 186

Query: 164 ---------------------------YFDHMRSRYSIQP--QLEHYGAMVDLLGRAGHI 194
                                      + D     +   P   L  + +MV +    G+ 
Sbjct: 187 HGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYA 246

Query: 195 EEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGEVAIVNISRL-MGGDYVL---L 247
           E+   L   M    + PD     ALL AC         E     I R     D ++   L
Sbjct: 247 EKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATAL 306

Query: 248 SNMYCYLKRWDTAENVREIMKKK 270
            N+Y  L R + +E++ E +K +
Sbjct: 307 LNLYAKLGRLNASEDIFEEIKDR 329


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 169/411 (41%), Positives = 247/411 (60%), Gaps = 4/411 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA-LNHAYW 62
           KDVV+W++M+  + +    D A   F +M    ++P++FT +S I  CA   A ++    
Sbjct: 464 KDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQ 523

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            H + I+ + +    + +AL+ MY++ G I  A+ VF+     D+  WN+MISG A HG 
Sbjct: 524 FHAISIKYRYQDAICVGSALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGY 583

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           + +A   F +ME   +  D  TFL ++  C+H GLV+EG++YFD M   ++I P +EHY 
Sbjct: 584 SKEALDTFRQMETVGIEMDGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYS 643

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            MVDL  RAG ++E   LI  M      +VWR LL ACR  K +ELG++A   +  L   
Sbjct: 644 CMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPD 703

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           D   YVLLSN+Y    RW   + VR++M  K V+K  G SW+++   +H F A D+SHP 
Sbjct: 704 DSATYVLLSNIYAAAGRWKERDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIACDKSHPL 763

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           ++ I   L ++  R K EG+ P T +VL D++EE+KE  L  HSE+LALA+G++ T P T
Sbjct: 764 SEQIYAKLKAMTTRLKQEGYCPNTSVVLHDIAEEQKETMLVMHSERLALAFGLIATPPRT 823

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            ++I KNLR+C DCH  +KM+S +  R II+RD  RFH F  G CSCGD+W
Sbjct: 824 PLQIVKNLRVCGDCHMVMKMVSLIEDREIIMRDCSRFHHFNAGACSCGDFW 874



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 118/239 (49%), Gaps = 18/239 (7%)

Query: 1   MP-DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           MP  ++VVSW +MIGG ++NA    A   F  M    V+P++FT+++V+   A +  L  
Sbjct: 363 MPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLT--ASIPIL-- 418

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  II+   +    +  AL+  YSK G  + A  +F  +   DV  W+AM+S  + 
Sbjct: 419 LPQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQ 478

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTAC-SHCGLVEEGRKYFDHMRSRYSIQPQL 178
            G    A+ +F KM M  + P+  T    + AC S    +++GR+ F  +  +Y  Q  +
Sbjct: 479 AGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQ-FHAISIKYRYQDAI 537

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS----------ACRTFKRLE 227
               A+V +  R G I+ A  +    T + D+V W +++S          A  TF+++E
Sbjct: 538 CVGSALVTMYARKGSIDSARIVFERQT-DRDLVSWNSMISGYAQHGYSKEALDTFRQME 595



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 106/220 (48%), Gaps = 1/220 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++VV+W S++ G+V+     + +  F  M +  V P+ FTF SV+   A  GA++  
Sbjct: 161 MPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLG 220

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   ++        +  +LI+MYSKCG ++ AK VF  ++  D+  WN +++G+ ++
Sbjct: 221 RRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLN 280

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A  +F             T+  ++  C++   +   R+    +  ++        
Sbjct: 281 EHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVL-KHGFHSDGNV 339

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
             A++D   + G +++A+ +   M    +VV W A++  C
Sbjct: 340 MTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGC 379



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 97/199 (48%), Gaps = 8/199 (4%)

Query: 78  LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFN 137
           +  AL+DMY KCG ++  + VF+ + + +V  W ++++G       +D  A+F +M    
Sbjct: 137 VGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEG 196

Query: 138 VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLEHYGAMVDLLGRAGHIEE 196
           V P+  TF  +L+A +  G V+ GR+   H +S ++  +  +    +++++  + G +EE
Sbjct: 197 VWPNPFTFTSVLSAVASQGAVDLGRRV--HAQSVKFGCRSTVFVCNSLINMYSKCGLVEE 254

Query: 197 AYGLITSMTMEPDVVVWRALLSAC----RTFKRLELGEVAIVNISRLMGGDYVLLSNMYC 252
           A  +   M    D+V W  L++         + L+L   +  ++++L    Y  +  +  
Sbjct: 255 AKAVFRQMETR-DMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCA 313

Query: 253 YLKRWDTAENVREIMKKKG 271
            LK+   A  +   + K G
Sbjct: 314 NLKQLALARQLHSCVLKHG 332



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA-Y 61
           D+D+VSWNSMI G+ ++    EAL  FR+M +  +E D  TF +VI GC   G +     
Sbjct: 565 DRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHAGLVKEGQQ 624

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIH 120
           +  +++++  I       + ++D+YS+ GK+     + + +       VW  ++    +H
Sbjct: 625 YFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRTLLGACRVH 684


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 169/413 (40%), Positives = 243/413 (58%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP + +VSWNSM+     N   ++ +  F  M  + + PD+ T  +++  C   G    A
Sbjct: 302 MPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQA 361

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I       + I++ AL+++Y+K G++  ++++F+ ++  D   W AM++G A+H
Sbjct: 362 ESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVH 421

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A  +F  M    V  D +TF  LL+ACSH GLVEEG+KYF+ M   Y ++P+L+H
Sbjct: 422 ACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDH 481

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MVDLLGR+G +E+AY LI SM MEP   VW ALL ACR +  +ELG+     +  L 
Sbjct: 482 YSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLD 541

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D   Y++LSN+Y     W  A  VR +MK++ + ++ G S++E    IH+F  GD+ H
Sbjct: 542 PSDHRNYIMLSNIYSAAGLWRXASKVRXLMKERRLTRNPGCSFIEHGNKIHRFVVGDQLH 601

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P +  I   L  LI++    G  P TE VL D+ EE K   +  HSEKLA+A+G+L T  
Sbjct: 602 PRSDEIHTKLEELIRKIXEAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGS 661

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  + I+KNLRIC DCHS  K  S L +R II+RD  RFH F  GLCSC DYW
Sbjct: 662 GVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 714



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 106/220 (48%), Gaps = 3/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           MP++D+VSWNS++ G          L  F  M + S  +P++ T  SV+  CA +GAL+ 
Sbjct: 200 MPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDE 259

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H ++++  +     +  +LI+MY K G +  A ++F+ +    +  WN+M+     
Sbjct: 260 GKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNH 319

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G A     +F  M+   + PD  T + LL AC+  GL  +      ++  R      + 
Sbjct: 320 NGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIH-RCGFNADII 378

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A+++L  + G +  +  +   +  + D + W A+L+ 
Sbjct: 379 IATALLNLYAKLGRLNASEDIFEEIK-DRDTIAWTAMLAG 417



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/263 (20%), Positives = 107/263 (40%), Gaps = 38/263 (14%)

Query: 46  SVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN 105
           S+++  +   ++++   +H  +I+     +  +   L+ MY K G  + A+ +FD +   
Sbjct: 144 SLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNR 203

Query: 106 DVSVWNAMISGVAIHGLAADASAIFTKMEM-FNVLPDSITFLGLLTACSHCGLVEEGRK- 163
           D+  WN+++SG++  G        F +M       P+ +T L +++AC+  G ++EG+  
Sbjct: 204 DLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSL 263

Query: 164 ---------------------------YFDHMRSRYSIQP--QLEHYGAMVDLLGRAGHI 194
                                      + D     +   P   L  + +MV +    G+ 
Sbjct: 264 HGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYA 323

Query: 195 EEA---YGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL-MGGDYVL---L 247
           E+    + L+    + PD     ALL AC         E     I R     D ++   L
Sbjct: 324 EKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATAL 383

Query: 248 SNMYCYLKRWDTAENVREIMKKK 270
            N+Y  L R + +E++ E +K +
Sbjct: 384 LNLYAKLGRLNASEDIFEEIKDR 406


>gi|356570245|ref|XP_003553300.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g26782, mitochondrial-like [Glycine max]
          Length = 555

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 171/413 (41%), Positives = 253/413 (61%), Gaps = 8/413 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M + D   WNS+I  + +N    EA   F +M+ S      F + +VI      GAL   
Sbjct: 148 MNESDHYFWNSVIAEYAQNGLSAEAFSVFGDMVKS----GNFRYNAVIMDXGLSGALQLG 203

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ +I+  +E +  +  +++D+Y KC +++MA++ FD ++  +V  W AM++G  +H
Sbjct: 204 KCIHHQVIKMDLEDSVFVGTSIVDIYCKCERVEMARKAFDCMKVKNVKSWTAMVAGYGMH 263

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +A  IF KM    V P+ ITF+ +L ACSH G+++EG  +F+ M+  + ++P +EH
Sbjct: 264 GRAKEAMEIFYKMIRSGVKPNYITFVSVLAACSHAGMLKEGXHWFNRMKCEFIVEPGIEH 323

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  MVDLLGRAG++   YGLI  M  +PD ++W +LL ACR  K +ELGE++   +  L 
Sbjct: 324 YLCMVDLLGRAGYLX-CYGLIKEMNAKPDFIIWGSLLGACRIHKNVELGEISARKLFELD 382

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSN+Y    RWD  E +R +MK +G+ K+ G S +EL G IH    GD+ H
Sbjct: 383 XSNCGYYVLLSNIYADAGRWDEVERMRILMKSRGLLKAPGFSIVELKGRIHVLLVGDKEH 442

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I + L     + +  G++P   +VL DV EEEK   L  HSEKLA+A+GI+ + P
Sbjct: 443 PQHEKIYEYLDKXNVKLQELGYMPNXNMVLHDVDEEEKGMVLRVHSEKLAVAFGIMNSVP 502

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G+ I I KNLRIC DC+  IK+I +++ R I+VRD  RFH F+ G CSCGDYW
Sbjct: 503 GSIIHIIKNLRICGDCNVVIKLIFKVVNREIVVRDSKRFHHFKEGSCSCGDYW 555



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 133/273 (48%), Gaps = 51/273 (18%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML---SSKVEPDKFTFA-SVIYGC----- 51
           +PD+ VVSW S+I G V+N R  +A+R F+E+L   S  VE +   F  SV+ GC     
Sbjct: 39  IPDRSVVSWTSIIAGCVQNDRARDAVRVFKELLVEESGSVESEDGVFVDSVLLGCVVSAF 98

Query: 52  ARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWN 111
           ++LG       VH L+I++  E    +   L+D Y+K G++ +AK VFD +  +D   WN
Sbjct: 99  SKLGWRGVTEGVHGLVIKRGFERCVGVGNTLMDAYAKFGEMGVAK-VFDGMNESDHYFWN 157

Query: 112 AMISGVAIHGLAADASAIFTKMEM-----FNV-------------------------LPD 141
           ++I+  A +GL+A+A ++F  M       +N                          L D
Sbjct: 158 SVIAEYAQNGLSAEAFSVFGDMVKSGNFRYNAVIMDXGLSGALQLGKCIHHQVIKMDLED 217

Query: 142 SITFLG--LLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199
           S+ F+G  ++     C  VE  RK FD M+ +      ++ + AMV   G  G  +EA  
Sbjct: 218 SV-FVGTSIVDIYCKCERVEMARKAFDCMKVK-----NVKSWTAMVAGYGMHGRAKEAME 271

Query: 200 LITSMT---MEPDVVVWRALLSACRTFKRLELG 229
           +   M    ++P+ + + ++L+AC     L+ G
Sbjct: 272 IFYKMIRSGVKPNYITFVSVLAACSHAGMLKEG 304


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 172/413 (41%), Positives = 249/413 (60%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++VVSW+ MI G+ +     EAL  F++ L   V+ + FTF+SVI  C+    L   
Sbjct: 187 MPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELG 246

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L ++   + +  + +ALI +YSKCG I+ A +VFD +   ++ +WN+M+   A H
Sbjct: 247 KLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQH 306

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                   +F +M    + P+ I FL +L ACSH GLVE+GR+YF  MR  Y I+P+ EH
Sbjct: 307 AHTQRVFGLFEEMGNVGMKPNFIXFLSVLYACSHAGLVEKGREYFSLMRD-YGIEPETEH 365

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y ++VDLLGRAG ++EA  +I  M M P   VW ALL+ CR  K  E+       I+ + 
Sbjct: 366 YASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMD 425

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G +VLLSN Y    R++ A  +R++++ +GV+K  G SW+E    +H F AGDRSH
Sbjct: 426 SSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSH 485

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            +   I + L  L +  +  G++  T  VL  V  EEK   + +HSE+LA+A+G++   P
Sbjct: 486 AKWVEIYEKLEELEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHSERLAIAFGLITFPP 545

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH+ IK +S+   RV+IVRD  RFHRFE G CSCGDYW
Sbjct: 546 GRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 105/219 (47%), Gaps = 2/219 (0%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P K   +W+S+I  F +N     AL+FFR ML+  V PD   + S    C  L   +   
Sbjct: 87  PKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGK 146

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            VH L ++     +  + ++L+DMY+KCG+I  A+ +FD +   +V  W+ MI G A   
Sbjct: 147 SVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLD 206

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              +A  +F +  + +V  +  TF  ++  CS    +E G K    +  + S        
Sbjct: 207 DGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELG-KLIHGLCLKMSFDSSSFVG 265

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
            A++ L  + G IE AY +   +    ++ +W ++L AC
Sbjct: 266 SALISLYSKCGVIEGAYQVFDEIPTR-NLGLWNSMLIAC 303



 Score = 44.7 bits (104), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 14/172 (8%)

Query: 52  ARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWN 111
            R  +L     +H  I++  ++   ++S  LI++YSK      + +VFD   +   + W+
Sbjct: 36  TRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWS 95

Query: 112 AMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR 171
           ++IS  A +     A   F +M    V PD   +    +A   CG +       D  +S 
Sbjct: 96  SVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIY---PSATKACGFLRRS----DVGKSV 148

Query: 172 YSIQPQLEHY------GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           + +  +  +Y       ++VD+  + G I +A  L   M  E +VV W  ++
Sbjct: 149 HCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMP-ERNVVSWSGMI 199


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 165/414 (39%), Positives = 254/414 (61%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNH 59
           M  +DV SW+++I        + E L  F EM       P++    SV+  C  LGAL+ 
Sbjct: 146 MDRRDVASWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHLGALDL 205

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
               H  ++    E+N I+  +LIDMY KCG I+    +F  + + +   ++ MI+G+A+
Sbjct: 206 GRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQLSYSVMITGLAM 265

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +A  +F+ M    + PD + +LG+L+AC+H GLV+EG + F+ M+  + I+P ++
Sbjct: 266 HGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRMKLEHGIEPTIQ 325

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HYG +V L+GRAG + +A   I SM ++P+ VVWR LLSAC+    LE+GE+A  ++  L
Sbjct: 326 HYGCIVHLMGRAGMLNKALEHIRSMPIKPNEVVWRGLLSACKFHHNLEIGEIAAKSLGEL 385

Query: 240 MG---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                GDYV+LSNMY   KRW+    +R  M +KG  ++ G S +++   I++F + D S
Sbjct: 386 NSSNPGDYVVLSNMYARAKRWEDVAKIRTEMARKGFTQTPGFSLVQVERKIYKFVSQDMS 445

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+ + + +++  +  + K EG+ P T  VL DV EEEK   L  HS+KLA+A+ ++ TS
Sbjct: 446 HPQCKGMYEMIHQMEWQLKFEGYSPDTSQVLFDVDEEEKRQRLKAHSQKLAMAFALIHTS 505

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  IRI++NLR+C+DCH++ K+IS + +R I VRDR RFH F+ G CSC DYW
Sbjct: 506 QGAPIRIARNLRMCNDCHTYTKLISVIYQREITVRDRNRFHHFKDGTCSCRDYW 559



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 117/251 (46%), Gaps = 44/251 (17%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           +N+MI G+V     + AL  + EML   VE D FT+ ++   CA L ++     +H  I 
Sbjct: 53  FNTMIRGYVNVMNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIF 112

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
           ++ +E +  +  +LI+MY KCGKI+++  VF+ + R DV+ W+A+I+  A  G+ ++  +
Sbjct: 113 KRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLS 172

Query: 129 IFTKMEM-FNVLPDSITFLGLLTACSH--------------------------------- 154
           +F +M    +  P+    + +L+AC+H                                 
Sbjct: 173 VFGEMSREGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMY 232

Query: 155 --CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME---PD 209
             CG +E+G   F  M  +  +      Y  M+  L   G   EA  + + M  E   PD
Sbjct: 233 VKCGCIEKGLSLFQRMVKKNQLS-----YSVMITGLAMHGRGMEALQVFSDMLEEGLKPD 287

Query: 210 VVVWRALLSAC 220
            VV+  +LSAC
Sbjct: 288 DVVYLGVLSAC 298


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 166/413 (40%), Positives = 248/413 (60%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KD + W +MI G+ +N R ++A   F +ML   V+PD +T +S++  CA+L +L H 
Sbjct: 282 LPKKDEICWTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHG 341

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++   I+ + ++S+AL+DMY KCG    A+ +F+T+   +V  WNAMI G A +
Sbjct: 342 QVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQN 401

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  ++ +M+  N  PD+ITF+G+L+AC +  +V+EG+KYFD + S + I P L+H
Sbjct: 402 GQVLEALTLYERMQQENFKPDNITFVGVLSACINADMVKEGQKYFDSI-SEHGIAPTLDH 460

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRT--FKRLELGEVAIVNISR 238
           Y  M+ LLGR+G +++A  LI  M  EP+  +W  LLS C     K  EL    +  +  
Sbjct: 461 YACMITLLGRSGSVDKAVDLIQGMPHEPNYRIWSTLLSVCAKGDLKNAELAASHLFELDP 520

Query: 239 LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
              G Y++LSN+Y    RW     VR +MK+K  +K    SW+E+   +H+F + D  HP
Sbjct: 521 RNAGPYIMLSNLYAACGRWKDVAVVRSLMKEKNAKKFAAYSWVEVGNKVHRFVSEDHYHP 580

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           E   I   L  LI   +  G+ P T +VL +V EEEK  ++ +HSEKLALA+ +++   G
Sbjct: 581 EVGKIYGELNRLISILQQIGYNPDTNIVLHNVGEEEKFRSISYHSEKLALAFALIRKPNG 640

Query: 359 -TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IRI KN+R+C DCH ++K  S  + R II+RD  RFH F GG CSC D W
Sbjct: 641 VAPIRIIKNIRVCDDCHVFMKFASITISRPIIMRDSNRFHHFFGGKCSCNDNW 693



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 124/260 (47%), Gaps = 14/260 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D VS+N++I  F  N    +AL+    M     +P +++  + +  C++L  L H 
Sbjct: 115 MPYRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHG 174

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I+   +  N  +  A+ DMY+KCG I  A+ +FD +   +V  WN MISG    
Sbjct: 175 KQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKM 234

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +   +F +M++  + PD +T   +L A   CG V++ R  F  +  +  I      
Sbjct: 235 GNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEIC----- 289

Query: 181 YGAMVDLLGRAGHIEEAYGLITSM---TMEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
           +  M+    + G  E+A+ L   M    ++PD     +++S+C     L  G+V    + 
Sbjct: 290 WTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVV 349

Query: 238 RLMGGDYVL-----LSNMYC 252
            +MG D  +     L +MYC
Sbjct: 350 -VMGIDNSMLVSSALVDMYC 368



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 118/267 (44%), Gaps = 29/267 (10%)

Query: 18  RNARFDEALRFFREMLSSKVEP-DKFTFASVIYGCARLGALNHAYWVHNLIIEKKI-ELN 75
           R   F +A R    M  +  +P D F    +++  A+ G L+ A  V + + ++ +   N
Sbjct: 34  RANDFIQAKRLQSHMELNLFQPKDSFIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWN 93

Query: 76  FILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEM 135
            +LSA     Y+K G ++    VFD +   D   +N +I+  A +G +  A  +  +M+ 
Sbjct: 94  TLLSA-----YAKMGMVENLHVVFDQMPYRDSVSYNTLIACFASNGHSGKALKVLVRMQE 148

Query: 136 FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY---GAMVDLLGRAG 192
               P   + +  L ACS    +  G++    +  R  +    E+     AM D+  + G
Sbjct: 149 DGFQPTQYSHVNALQACSQLLDLRHGKQ----IHGRIVVADLGENTFVRNAMTDMYAKCG 204

Query: 193 HIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE----VAIVNISRLMG--GDYVL 246
            I++A  L   M ++ +VV W  ++S       +++G     + + N  +L G   D V 
Sbjct: 205 DIDKARLLFDGM-IDKNVVSWNLMISG-----YVKMGNPNECIHLFNEMQLSGLKPDLVT 258

Query: 247 LSNM---YCYLKRWDTAENVREIMKKK 270
           +SN+   Y    R D A N+   + KK
Sbjct: 259 VSNVLNAYFRCGRVDDARNLFIKLPKK 285


>gi|357128440|ref|XP_003565881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Brachypodium distachyon]
          Length = 682

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 172/413 (41%), Positives = 251/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+K+VVSW +++  + +N RF++AL+ F ++    V P++FT+A  +  CA L AL + 
Sbjct: 270 LPEKNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALKNG 329

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +    ++        +  AL++MYSK G I  A  VF ++   DV  WN++I G A H
Sbjct: 330 NALSASAMKTGHWGALSVCNALMNMYSKSGSIHDAWRVFLSMPWRDVVSWNSVIIGYAHH 389

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GLA +A  +F  M +  ++P  +TF+G+L AC+  GLV+EG  Y + M     I+P  EH
Sbjct: 390 GLAREAMCVFHDMLLAEIVPSYVTFVGVLLACAQLGLVDEGLYYLNIMMKEMGIKPGREH 449

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MV LL RAG ++EA   I S  +  DVV W++LLS+C+ +K   LG      I +L 
Sbjct: 450 YTCMVGLLCRAGRLDEAEQFILSNCIGTDVVAWKSLLSSCQVYKNYGLGHRVAEQILQLK 509

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D   YVLLSNMY    RWD    VR++M+++GVRK  G SW+++   +H F + D++H
Sbjct: 510 PNDVGTYVLLSNMYAKANRWDGVVKVRKLMRERGVRKEPGVSWIQVGSEVHVFTSEDKNH 569

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
                I   L  LI + K  G++P   +VL DV  E+KE +L +HSEK+ALA+G++ +  
Sbjct: 570 KWINQITIKLKELIGQIKVIGYVPNCAVVLHDVEAEQKEEHLMYHSEKMALAFGLIHSPE 629

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KNLRIC DCH  IK+IS + RR I+VRD +RFH  + G+CSC DYW
Sbjct: 630 GETIRIMKNLRICDDCHVAIKLISVVTRRKIVVRDTVRFHCIDDGVCSCDDYW 682



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 104/213 (48%), Gaps = 2/213 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D+ ++NSMI GF+    FD ++R  R M+    + D  ++ +V+  CA    L     VH
Sbjct: 173 DIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVEQWDHVSYVAVLGHCASTKELLLGCQVH 232

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
              +++++E N  + +AL+DMY KC   + A   F+ +   +V  W A+++    +    
Sbjct: 233 AQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLPEKNVVSWTAVMTAYTQNERFE 292

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           DA  +F  +E+  V P+  T+   L +C+    ++ G         +      L    A+
Sbjct: 293 DALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALKNGNA-LSASAMKTGHWGALSVCNAL 351

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           +++  ++G I +A+ +  SM    DVV W +++
Sbjct: 352 MNMYSKSGSIHDAWRVFLSMPWR-DVVSWNSVI 383



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/227 (19%), Positives = 102/227 (44%), Gaps = 5/227 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++ VS N ++ G+    R  +AL   +   ++    +++  ++ +   A + +    
Sbjct: 71  MPSRNAVSGNLLMSGYASAGRHSDALALLK---AADFSLNEYVLSTALSAAAHVRSYGMG 127

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H   ++  ++ +  +  A++ MY +C  ++ A +VF+ V   D+  +N+MI+G    
Sbjct: 128 RQCHGYAVKSGLQEHPYVCNAVLHMYCQCAHVEDAVKVFENVSGFDIFAFNSMINGFLDL 187

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    +  I   M       D ++++ +L  C+    +  G +       R  ++  +  
Sbjct: 188 GEFDGSIRIVRSMVGEVEQWDHVSYVAVLGHCASTKELLLGCQVHAQALKR-RLEQNVYV 246

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
             A+VD+ G+     +A+     +  E +VV W A+++A    +R E
Sbjct: 247 GSALVDMYGKCDCARDAHSAFEVLP-EKNVVSWTAVMTAYTQNERFE 292



 Score = 38.9 bits (89), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 81/167 (48%), Gaps = 19/167 (11%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
           LI  Y KCG++ +A+++FD +   +    N ++SG A  G  +DA A+  K   F++  +
Sbjct: 51  LIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLMSGYASAGRHSDALALL-KAADFSL--N 107

Query: 142 SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY----GAMVDLLGRAGHIEEA 197
                  L+A +H      GR+        Y+++  L+ +     A++ +  +  H+E+A
Sbjct: 108 EYVLSTALSAAAHVRSYGMGRQCHG-----YAVKSGLQEHPYVCNAVLHMYCQCAHVEDA 162

Query: 198 YGLITSMTMEPDVVVWRALLSACRTFKRLELGEV-AIVNISRLMGGD 243
             +  +++   D+  + ++++       L+LGE    + I R M G+
Sbjct: 163 VKVFENVS-GFDIFAFNSMING-----FLDLGEFDGSIRIVRSMVGE 203


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 160/413 (38%), Positives = 246/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K  V+W+S+  GFV+N   +E L  F+      ++  +FT +S++  CA L  +   
Sbjct: 218 MPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEG 277

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH +I++     N  ++ +L+D+Y+KCG+I+ + EVF  ++  +V +WNAMI+  + H
Sbjct: 278 TQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRH 337

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
             + +A  +F KM+   + P+ +T+L +L+ACSH GLVEEGR YF+ + S  + +P + H
Sbjct: 338 AHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLH 397

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  MVD+LGR+G  +EA+ L+  M  EP   +W +LL + R  K + L  +A   + RL 
Sbjct: 398 YSCMVDVLGRSGKTDEAWKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLE 457

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              GG++VLLSN+Y     W+     R+ ++  G +K  G+SW+E  G IH F AG+R H
Sbjct: 458 PENGGNHVLLSNVYAASGNWENVVVARKYLRDSGAKKEMGRSWIEAKGKIHVFVAGEREH 517

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    +   L  +    +       T+  L DV  ++KE  L HHSEKLA A+G++   P
Sbjct: 518 PGITDVYNKLEEIYHEMRKISHRANTQCDLHDVHADQKEELLKHHSEKLAFAFGLISLPP 577

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              I I KNLRIC DCHS++K++S +  R +IVRD  RFH F+ G CSCGD+W
Sbjct: 578 NIPITIYKNLRICGDCHSFMKIVSCITERQVIVRDINRFHHFKDGSCSCGDFW 630



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 108/219 (49%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  + ++SWN+MI G+  N    EAL+ F  M     +  +FT +S +  CA   A+   
Sbjct: 117 MSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAIIEC 176

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H + I+  ++ +  +  A +D+Y+KC  I+ A  VF+ +       W+++ +G   +
Sbjct: 177 KQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQN 236

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +   +F   +   +     T   +L+ C+   L+ EG +    +  ++     L  
Sbjct: 237 GLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHA-VIVKHGFHRNLFV 295

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             ++VD+  + G IE++Y +   M  E +VV+W A++++
Sbjct: 296 ATSLVDVYAKCGQIEKSYEVFADME-EKNVVLWNAMIAS 333



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 78/180 (43%), Gaps = 2/180 (1%)

Query: 40  DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF 99
           D FT   ++  CA+  +L      H L I   +  + +    LI++Y+KCG+   A+ VF
Sbjct: 55  DVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVF 114

Query: 100 DTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVE 159
           D +    +  WN MI+G   +    +A  +F++M          T    L AC+    + 
Sbjct: 115 DAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAII 174

Query: 160 EGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           E ++    +  + ++        A +D+  +   I++A  +  +M  E   V W +L + 
Sbjct: 175 ECKQ-LHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMP-EKTSVTWSSLFAG 232


>gi|53793521|dbj|BAD54682.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 381

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 164/377 (43%), Positives = 236/377 (62%), Gaps = 6/377 (1%)

Query: 40  DKFTFASVIYGCARLGALNHAYWVHN-LIIEKKIELNFILSAALIDMYSKCGKIQMAKEV 98
           D  T  +++  CA LGAL+ A W H  L       +   L+ AL++MY +CG +Q A  +
Sbjct: 5   DHVTLLALLSACAHLGALHTARWAHAYLATTCSFPITTNLATALLNMYMRCGDVQTACSL 64

Query: 99  FDTV--QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
           F +   +  DV  W  MI+G+A++G + DA  +FT M+  N+ PDS+T   +L+AC+H G
Sbjct: 65  FHSTPTRHKDVHTWTVMIAGLALNGFSTDALHLFTHMKDHNIQPDSVTLTAVLSACTHAG 124

Query: 157 LVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRAL 216
           +V+EG++    M   Y +QP +EHYG  VDLLGRAG +EEA  LI ++  + DV +W AL
Sbjct: 125 MVDEGKRILRRMPLDYHLQPTIEHYGCTVDLLGRAGLLEEALALIRAVPFKADVALWGAL 184

Query: 217 LSACRTFKRLELGEVAIVNISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVR 273
           L ACR  +  E+G++  + I RL     G +V LSN+Y    +WD  + VR  MK+  + 
Sbjct: 185 LVACRCHRNFEMGQMVAMEILRLDPQHAGAWVFLSNVYAAAGKWDLVQEVRSSMKQHRIH 244

Query: 274 KSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEE 333
           K  G S +EL GV+++F +GD SHP++  I  +L  + +    +G  PAT+LV  D+ EE
Sbjct: 245 KPPGSSVVELDGVVYEFLSGDHSHPQSDQIYAMLDEIGKTLSLKGHKPATKLVTFDIDEE 304

Query: 334 EKEGNLYHHSEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDR 393
           +KE  +  HSEKLA+A+G++ T  G  IRI KNLRIC DCHS +K++S +  RVI+VRDR
Sbjct: 305 DKEVCISQHSEKLAVAFGLINTRRGAVIRIVKNLRICEDCHSVMKVVSEVYDRVIVVRDR 364

Query: 394 IRFHRFEGGLCSCGDYW 410
            RFH F+ G CSC DYW
Sbjct: 365 NRFHHFKSGSCSCLDYW 381



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 12/124 (9%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDV +W  MI G   N    +AL  F  M    ++PD  T  +V+  C   G ++     
Sbjct: 73  KDVHTWTVMIAGLALNGFSTDALHLFTHMKDHNIQPDSVTLTAVLSACTHAGMVDEGKR- 131

Query: 64  HNLIIEKKIELNFILSAAL------IDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISG 116
               I +++ L++ L   +      +D+  + G ++ A  +   V  + DV++W A++  
Sbjct: 132 ----ILRRMPLDYHLQPTIEHYGCTVDLLGRAGLLEEALALIRAVPFKADVALWGALLVA 187

Query: 117 VAIH 120
              H
Sbjct: 188 CRCH 191


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 159/418 (38%), Positives = 253/418 (60%), Gaps = 8/418 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-----LSSKVEPDKFTFASVIYGCARLG 55
           MP++D++SW +M+   V N   +E+   F  M     LS  + P++ TF +++  C+ LG
Sbjct: 235 MPERDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLG 294

Query: 56  ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
           AL     +H  + E+  + + ++S AL++ Y +CG +  AK VFD ++R DV  W++MIS
Sbjct: 295 ALAEGRKIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMIS 354

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
             A  G   +A  ++ +M     LPD I F+ +L ACS+ G+VE    +F  +     ++
Sbjct: 355 AFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVE 414

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA--- 232
           P LEHY  MVD+LGRAG + +A  L+  M   P  +++  +LSAC+ +  +E GE A   
Sbjct: 415 PTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEV 474

Query: 233 IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKA 292
           +  +       Y+ L+N+Y   KR   A  +R++M+++G++K  G SW+E+   +H+F A
Sbjct: 475 VFELDPENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIA 534

Query: 293 GDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGI 352
           GD+ HP+   I   +  L ++ K  G+   T++VL DV E+EKE  L++HSEKLA+A+G+
Sbjct: 535 GDKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAFGL 594

Query: 353 LKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + T PG  +RI KNLR+C DCH+  K+IS++  R I+VRD  RFH F+ G+CSC DYW
Sbjct: 595 ISTPPGAPLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFQNGMCSCNDYW 652



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 107/255 (41%), Gaps = 46/255 (18%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++D+V+W +M+       + + A    RE      E + F++ S++    R G +  A
Sbjct: 111 MPERDLVAWTAMLAANAERGQMENA----RETFDQMPERNLFSWTSLLSAYGRSGDVKAA 166

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                 + +   E N +   A++  YS  G +  AK  FD++   D+  W AM+S  A +
Sbjct: 167 ----GRVFDSMPEWNLVAWTAMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFN 222

Query: 121 GLAADASAIFTKM-------------------------EMFN-----------VLPDSIT 144
           G       IF +M                         E+F+           + P+ +T
Sbjct: 223 GHLRYTREIFQRMPERDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVT 282

Query: 145 FLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
           F+ LL ACS  G + EGRK    +  R      L    A+V+  GR G + +A  +   M
Sbjct: 283 FITLLDACSFLGALAEGRKIHAAVAER-GFDTDLVVSNALVNFYGRCGALGDAKIVFDGM 341

Query: 205 TMEPDVVVWRALLSA 219
               DV+ W +++SA
Sbjct: 342 RRR-DVISWSSMISA 355



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 85/193 (44%), Gaps = 37/193 (19%)

Query: 53  RLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA 112
           RLG +  A  + + I ++    +      ++ +Y++ G +  AK VFD + R  +  W A
Sbjct: 4   RLGCVERARQIFDAIADR----DSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTA 59

Query: 113 MISGVAIHGLAADASAIFTKME-------------------------MFNVLP--DSITF 145
           ++S  A+ G   +A  +F  M+                          F+ +P  D + +
Sbjct: 60  LLSAFALSGHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAW 119

Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
             +L A +  G +E  R+ FD M  R      L  + +++   GR+G ++ A  +  SM 
Sbjct: 120 TAMLAANAERGQMENARETFDQMPER-----NLFSWTSLLSAYGRSGDVKAAGRVFDSMP 174

Query: 206 MEPDVVVWRALLS 218
            E ++V W A+L+
Sbjct: 175 -EWNLVAWTAMLT 186



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 10/135 (7%)

Query: 85  MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSIT 144
           M+ + G ++ A+++FD +   D   W  M+S  A  G  ++A  +F +M  +++     +
Sbjct: 1   MFGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSL----GS 56

Query: 145 FLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
           +  LL+A +  G  EE +  FD M+ R      L  +  M+ +L    +IE+A      M
Sbjct: 57  WTALLSAFALSGHHEEAKTLFDTMQER-----DLIAWTIMLTVLATFSNIEDAKYHFDQM 111

Query: 205 TMEPDVVVWRALLSA 219
             E D+V W A+L+A
Sbjct: 112 P-ERDLVAWTAMLAA 125


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 167/383 (43%), Positives = 240/383 (62%), Gaps = 5/383 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KDV+SWN++IGG+     + EAL  F+EML S   P+  T  S++  CA LGA++  
Sbjct: 284 LPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG 343

Query: 61  YWVHNLIIE--KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
            W+H  I +  K +     L  +LIDMY+KCG I+ A +VF+++    +S WNAMI G A
Sbjct: 344 RWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFA 403

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG A  +  IF++M    + PD ITF+GLL+ACSH G+++ GR  F  M   Y + P+L
Sbjct: 404 MHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKL 463

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           EHYG M+DLLG +G  +EA  +I +M MEPD V+W +LL AC+    +ELGE    N+ +
Sbjct: 464 EHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIK 523

Query: 239 L---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           +     G YVLLSN+Y    RW+   N R ++  KG++K  G S +E+  V+H+F  GD+
Sbjct: 524 IEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDK 583

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
            HP  + I  +L  +    +  GF+P T  VL ++ EE KEG L HHSEKLA+A+G++ T
Sbjct: 584 FHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLIST 643

Query: 356 SPGTEIRISKNLRICHDCHSWIK 378
            PGT++ I KNLR+C +CH   K
Sbjct: 644 KPGTKLTIVKNLRVCRNCHEAYK 666



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 135/290 (46%), Gaps = 43/290 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KDVVSWN+MI G+     + EAL  F++M+ + V PD+ T  +V+  CA+ G++   
Sbjct: 183 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 242

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ I +     N  +  ALID+YSKCG+++ A  +F+ +   DV  WN +I G    
Sbjct: 243 RQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHM 302

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---KYFDHMRSRYSIQPQ 177
            L  +A  +F +M      P+ +T L +L AC+H G ++ GR    Y D      +    
Sbjct: 303 NLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASS 362

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMT-------------------------------- 205
           L    +++D+  + G IE A+ +  S+                                 
Sbjct: 363 LR--TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRK 420

Query: 206 --MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCY 253
             +EPD + +  LLSAC     L+LG     +I R M  DY +   +  Y
Sbjct: 421 NGIEPDDITFVGLLSACSHSGMLDLGR----HIFRSMTQDYKMTPKLEHY 466



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 114/246 (46%), Gaps = 33/246 (13%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + +++ WN+M  G   ++    AL+ +  M+S  + P+ +TF  ++  CA+  A      
Sbjct: 53  EPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQ 112

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGK------------------------------- 91
           +H  +++   +L+  +  +LI MY + G+                               
Sbjct: 113 IHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGY 172

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           I+ A+++FD +   DV  WNAMISG A  G   +A  +F  M   NV PD  T + +++A
Sbjct: 173 IENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSA 232

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           C+  G +E GR+    +   +     L+   A++DL  + G +E A GL   +  + DV+
Sbjct: 233 CAQSGSIELGRQVHSWI-DDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYK-DVI 290

Query: 212 VWRALL 217
            W  L+
Sbjct: 291 SWNTLI 296



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 2/126 (1%)

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
           +  A  VF+T+Q  ++ +WN M  G A+      A  ++  M    +LP+S TF  LL +
Sbjct: 41  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKS 100

Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
           C+     +EG++   H+  +      L  + +++ +  + G +E+A+ +    +   DVV
Sbjct: 101 CAKSKAFKEGQQIHGHVL-KLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDE-SPHRDVV 158

Query: 212 VWRALL 217
            + AL+
Sbjct: 159 SYTALI 164


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 158/413 (38%), Positives = 243/413 (58%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M   D++SWN++I   V         +   EM +  + PD+ T   ++  C+ L      
Sbjct: 483 MSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQG 542

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I +   E N  +  ALI+MYSKCG ++   +VF  ++  DV  W A+IS   ++
Sbjct: 543 KEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMY 602

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A   F  ME+  VLPDS+ F+  + ACSH G+V+EG ++FD M++ Y+++P++EH
Sbjct: 603 GEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEH 662

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  +VDLL R+G + +A   I SM M+PD  +W ALLSACR      + +     I  L 
Sbjct: 663 YACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELN 722

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D   YVL+SN+Y  L +WD  + VR  MK KG++K  G SW+E+   ++ F+ GD+S 
Sbjct: 723 SDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSF 782

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            +   +  +L  L++    EG++   +  L DV E++K   L  HSE+LA+A+G+L T P
Sbjct: 783 EQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNTKP 842

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G+ + + KNLR+C DCH+  K I+++++R I+VRD  RFHRF+ G CSCGD+W
Sbjct: 843 GSPLLVMKNLRVCGDCHTVTKYITKIMQREILVRDANRFHRFKDGACSCGDHW 895



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 118/229 (51%), Gaps = 4/229 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD V+WN+MI G+ +  R + +++ F +M+   V PD  +  S I  C + G L   
Sbjct: 283 MAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFV-PDMLSITSTIRACGQSGDLQVG 341

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            +VH  +I    E + +    LIDMY+KCG +  A+EVFDT +  D   WN++I+G    
Sbjct: 342 KFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQS 401

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +    F  M+M    PDS+TF+ LL+  S    + +GR     +  ++  + +L  
Sbjct: 402 GYYKEGLESFKMMKM-ERKPDSVTFVLLLSIFSQLADINQGRGIHCDV-IKFGFEAELII 459

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG 229
             +++D+  + G +++   + + M+   D++ W  ++++   F    +G
Sbjct: 460 GNSLLDVYAKCGEMDDLLKVFSYMSAH-DIISWNTVIASSVHFDDCTVG 507



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 84/160 (52%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P  +V  WNS+I     N  F +AL ++ EM   K++PD FTF SVI  CAR+  L    
Sbjct: 82  PTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGC 141

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            VH   +E   E +  +  ALIDMYS+   +  A+ VF+ +   D   WN++ISG   +G
Sbjct: 142 IVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNG 201

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG 161
              DA  ++ K  M  ++PD  T   +L AC     V+EG
Sbjct: 202 FWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEG 241



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 107/223 (47%), Gaps = 11/223 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D VSWNS+I G+  N  +++AL  + +   + + PD FT +SV+  C  L A+   
Sbjct: 182 MSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEG 241

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH +I +  I  + I+   L+ MY K  +++ A+ VF  +   D   WN MI G A  
Sbjct: 242 VAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQL 301

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE- 179
           G    +  +F  M +   +PD ++    + AC   G ++ G+  F H   +Y I    E 
Sbjct: 302 GRHEASVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGK--FVH---KYLIGSGFEC 355

Query: 180 ---HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                  ++D+  + G +  A  +  + T   D V W +L++ 
Sbjct: 356 DTVACNILIDMYAKCGDLLAAQEVFDT-TKCKDSVTWNSLING 397



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 3/158 (1%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIHG 121
           VH+LII   + L+ I S  LI  Y++      +  VF ++   N+V +WN++I  +  +G
Sbjct: 41  VHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNG 100

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
           L   A   +T+M    + PD+ TF  ++ +C+    +E G    +H       +  L   
Sbjct: 101 LFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAM-EMGFESDLYIG 159

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            A++D+  R   ++ A  +   M+   D V W +L+S 
Sbjct: 160 NALIDMYSRFVDLDNARYVFEEMS-NRDSVSWNSLISG 196


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 169/413 (40%), Positives = 244/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP + +VSWNSM+     N   ++ +  F  M  + + PD+ T  +++  C   G    A
Sbjct: 282 MPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQA 341

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I       + I++ AL+++Y+K G++  ++++F+ ++  D   W AM++G A+H
Sbjct: 342 ESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVH 401

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               +A  +F  M    V  D +TF  LL+ACSH GLVEEG+KYF+ M   Y ++P+L+H
Sbjct: 402 ACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDH 461

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MVDLLGR+G +E+AY LI SM MEP   VW ALL ACR +  +ELG+     +  L 
Sbjct: 462 YSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLD 521

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D   Y++LSN+Y     W  A  VR +MK++ + ++ G S++E    IH+F  GD+ H
Sbjct: 522 PSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLH 581

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P +  I   L  LI++ +  G  P TE VL D+ EE K   +  HSEKLA+A+G+L T  
Sbjct: 582 PRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGS 641

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  + I+KNLRIC DCHS  K  S L +R II+RD  RFH F  GLCSC DYW
Sbjct: 642 GVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 694



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 106/220 (48%), Gaps = 3/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           MP+KD+VSWNS++ G          L  F  M + S  +P++ T  SV+  CA +GAL+ 
Sbjct: 180 MPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDE 239

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H ++++  +     +  +LI+MY K G +  A ++F+ +    +  WN+M+     
Sbjct: 240 GKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNH 299

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G A     +F  M+   + PD  T + LL AC+  GL  +      ++  R      + 
Sbjct: 300 NGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIH-RCGFNADII 358

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A+++L  + G +  +  +   +  + D + W A+L+ 
Sbjct: 359 IATALLNLYAKLGRLNASEDIFEEIK-DRDRIAWTAMLAG 397



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/173 (20%), Positives = 86/173 (49%), Gaps = 3/173 (1%)

Query: 46  SVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN 105
           S+++  +   ++++   +H  +I+     +  +   L+ MY K G  + A+ +FD +   
Sbjct: 124 SLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNK 183

Query: 106 DVSVWNAMISGVAIHGLAADASAIFTKMEM-FNVLPDSITFLGLLTACSHCGLVEEGRKY 164
           D+  WN+++SG++  G        F +M       P+ +T L +++AC+  G ++EG K 
Sbjct: 184 DLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEG-KS 242

Query: 165 FDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              +  +  +  + +   +++++ G+ G ++ A  L   M +   +V W +++
Sbjct: 243 LHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVR-SLVSWNSMV 294


>gi|242095216|ref|XP_002438098.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
 gi|241916321|gb|EER89465.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
          Length = 596

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 171/421 (40%), Positives = 250/421 (59%), Gaps = 16/421 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM------LSSKVEPDKFTFASVIYGCARL 54
           M  +DV +WN+++ G  +    + AL  FR +      L  + EP++ T  + +  CA+L
Sbjct: 181 MSVRDVATWNALLAGLAQGTEPNLALVLFRRLAGSFRELPPREEPNEVTVVAALSACAQL 240

Query: 55  GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV--WNA 112
           GAL      H+         N  +  ALIDMYSKCG +  A EVF +++  D ++  +NA
Sbjct: 241 GALKDGLAAHDFARTIGAVGNVRVCNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNA 300

Query: 113 MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY 172
            I  +++HG   DA  +F +M    + PD +T+L +L  C+H GLV++GR+ FD MR   
Sbjct: 301 TIQALSMHGHGEDALKLFDEMPA-RIEPDEVTYLAVLGGCNHAGLVDDGRRVFDSMR--- 356

Query: 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA 232
            + P ++HYG +VDLLGRAG + EA+ +I  M    D+V+W+ LL A +    ++L E+A
Sbjct: 357 -VPPNMKHYGTIVDLLGRAGRLAEAHDMIMHMPFPADIVLWQTLLGAAKMHGNVDLAELA 415

Query: 233 IVNISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQ 289
              ++ L   + GDYVLLSN+Y    RW     VR+ M+   V+K  G S+ E+ GV+H+
Sbjct: 416 ATKLADLGSNVDGDYVLLSNVYASKSRWVDVGRVRDTMRSNDVKKVPGFSYTEIDGVMHK 475

Query: 290 FKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALA 349
           F  GD+ H   + I + L  +  +    G+ P T  VL D+ EEEK+  L +HSEKLA+A
Sbjct: 476 FINGDKEHLRWREIYRALDEIGSKICELGYEPETSNVLHDIGEEEKQYALSYHSEKLAIA 535

Query: 350 YGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDY 409
           +G++ T PG  IR+ KNLRIC DCH   K+IS+   RVII+RDR RFH+FE G CSC DY
Sbjct: 536 FGLISTPPGETIRVIKNLRICGDCHVVAKLISKAYGRVIIIRDRARFHQFEDGQCSCRDY 595

Query: 410 W 410
           W
Sbjct: 596 W 596



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 40/221 (18%)

Query: 40  DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF 99
           D  + +  +   AR         +H +++   +  +  L   L+D Y+KCG +  A+ VF
Sbjct: 119 DALSLSFALKATARCSDAFATLQLHAILVRLGVAADVRLMTTLLDSYAKCGDLASARRVF 178

Query: 100 DTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME-MFNVL-----PDSITFLGLLTACS 153
           D +   DV+ WNA+++G+A       A  +F ++   F  L     P+ +T +  L+AC+
Sbjct: 179 DEMSVRDVATWNALLAGLAQGTEPNLALVLFRRLAGSFRELPPREEPNEVTVVAALSACA 238

Query: 154 HCGLVEEGRKYFDHMR------------------------SR-----YSIQPQ---LEHY 181
             G +++G    D  R                        SR     +SI+ +   L  Y
Sbjct: 239 QLGALKDGLAAHDFARTIGAVGNVRVCNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSY 298

Query: 182 GAMVDLLGRAGHIEEAYGLITSMT--MEPDVVVWRALLSAC 220
            A +  L   GH E+A  L   M   +EPD V + A+L  C
Sbjct: 299 NATIQALSMHGHGEDALKLFDEMPARIEPDEVTYLAVLGGC 339


>gi|358345892|ref|XP_003637008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502943|gb|AES84146.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 175/415 (42%), Positives = 243/415 (58%), Gaps = 21/415 (5%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREM--LSSKVEPDKFTFASVIYGCARLGALNHA 60
           D+DVV+W  MIGG+ ++   + AL+ F EM  + + + P+ FT + V+  CARL AL   
Sbjct: 247 DRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFG 306

Query: 61  YWVHNLIIEK-KIELNFILSA-ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
             +H  ++ + +I+ + +  A  LIDMYSK G +  A+ VFD++ + +   W ++++G  
Sbjct: 307 KQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYG 366

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +HG A              ++ D ITFL +L ACSH G+V+ G   F  M   + + P +
Sbjct: 367 MHGAA--------------LVLDGITFLVVLYACSHSGMVDRGIDLFYRMSKDFVVDPGV 412

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           EHY  M DL GRAG + EA  LI  M+MEP  VVW ALLSACRT    EL E A   +  
Sbjct: 413 EHYACMADLFGRAGRLCEATRLINDMSMEPTPVVWIALLSACRTHSNEELAEFAAKKLLE 472

Query: 239 LMG---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L     G Y LLSN+Y   +RW     +R +MK+ G++K  G SW++    +  F  GDR
Sbjct: 473 LKADNDGTYTLLSNIYANARRWKDVARIRYLMKRTGIKKRPGWSWVKGRKGMETFYVGDR 532

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           +H ++Q I + L  LI+R K+ G++P T   L DV +EEK   L  HSEKLALAY IL  
Sbjct: 533 THLQSQKIYETLADLIKRIKAIGYVPQTNFSLHDVDDEEKGDQLLEHSEKLALAYAILTL 592

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            PG  IRI+KNLRIC D HS I  IS ++   II+RD  RFH+F+ G CSC  YW
Sbjct: 593 PPGAPIRITKNLRICGDFHSAITYISMIVEHEIILRDSSRFHQFKNGSCSCKGYW 647



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 126/263 (47%), Gaps = 48/263 (18%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYG------------- 50
           KDVV+WN+M+ G+ +N RF++AL  F +M   K+E D  T++SVI G             
Sbjct: 103 KDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDV 162

Query: 51  ----------------------CARLGALNHAYWVHNLIIE--KKIELN-----FILSAA 81
                                 CA +GAL H    H   ++   K E N       +  A
Sbjct: 163 FRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINA 222

Query: 82  LIDMYSKCGKIQMAKEVFDTV--QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFN-- 137
           LIDMY+KC  +++A+ +FD +  +  DV  W  MI G A HG A  A  +F++M   +  
Sbjct: 223 LIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNC 282

Query: 138 VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG-AMVDLLGRAGHIEE 196
           ++P+  T   +L AC+    ++ G++   ++  R  I   +      ++D+  ++G ++ 
Sbjct: 283 IVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDT 342

Query: 197 AYGLITSMTMEPDVVVWRALLSA 219
           A  +  SM+ + + V W +LL+ 
Sbjct: 343 AQVVFDSMS-KRNAVSWTSLLTG 364



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 109/256 (42%), Gaps = 67/256 (26%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           VSWNS++  +      ++A+  FREM +   + PD             +G +N       
Sbjct: 24  VSWNSIVSVYSHCFVPNDAVFLFREMTVGYGILPDT------------VGVVN------- 64

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
            I+     L F +  AL+DMY+KCGK++ A +VF+ ++  DV  WNAM++G + +G   D
Sbjct: 65  -ILPVSGFLGFFVGNALVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFED 123

Query: 126 ASAIFTKM--------------------------EMFNVL---------PDSITFLGLLT 150
           A ++F KM                          E  +V          P+ +T + LL+
Sbjct: 124 ALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLS 183

Query: 151 ACSHCGLVEEGRKYFDHMRSRYSI--------QPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
           AC+  G +  G++   H  S   I           L    A++D+  +   +E A  +  
Sbjct: 184 ACASVGALLHGKE--THCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFD 241

Query: 203 SM-TMEPDVVVWRALL 217
            +   + DVV W  ++
Sbjct: 242 EICPKDRDVVTWTVMI 257



 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 24/129 (18%)

Query: 110 WNAMISGVAIHGLAADASAIFTKMEM-FNVLPDSIT---------FLG------LLTACS 153
           WN+++S  +   +  DA  +F +M + + +LPD++          FLG      L+   +
Sbjct: 26  WNSIVSVYSHCFVPNDAVFLFREMTVGYGILPDTVGVVNILPVSGFLGFFVGNALVDMYA 85

Query: 154 HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM---TMEPDV 210
            CG +E+  K F+ MR +  +      + AMV    + G  E+A  L   M    +E DV
Sbjct: 86  KCGKMEDASKVFERMRFKDVVT-----WNAMVTGYSQNGRFEDALSLFGKMREEKIELDV 140

Query: 211 VVWRALLSA 219
           V W +++S 
Sbjct: 141 VTWSSVISG 149


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  331 bits (849), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 165/407 (40%), Positives = 252/407 (61%), Gaps = 4/407 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           +P KD +SWN+++ G+ +N    EA+  +  M   +   P++ T+ S+I   + +GAL  
Sbjct: 385 LPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQ 444

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  +I+  + L+  ++  LID+Y KCG+++ A  +F  + R+    WNA+I+ + I
Sbjct: 445 GMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGI 504

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +A  +F  M    V  D ITF+ LL+ACSH GLV+EG+K FD M+  Y I+P L+
Sbjct: 505 HGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLK 564

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HYG MVDLLGRAG++E+AY L+ +M ++PD  +W ALLSAC+ +   ELG +A   ++ +
Sbjct: 565 HYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEV 624

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVLLSN+Y   ++W+    VR + + +G+RK+ G S + +      F  G+++
Sbjct: 625 DSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQT 684

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+   I K L  L  + KS G++P    V  D+ E+EKE  L  HSE+LA+A+GI+ T 
Sbjct: 685 HPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTP 744

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGL 403
           P + IRI KNLR+C DCH+  K ISR+  R I+VRD  RFH F+ G+
Sbjct: 745 PRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDGI 791



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 118/221 (53%), Gaps = 4/221 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D+VSWNS+I  + +N     ALRFF+ M    + PD  T  S+    ++L     +
Sbjct: 283 MEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRIS 342

Query: 61  YWVHNLIIEKK-IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             +   +I ++ ++ + ++  AL++MY+K G +  A  VFD + R D   WN +++G   
Sbjct: 343 RSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQ 402

Query: 120 HGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           +GLA++A   +  M E  + +P+  T++ ++ A SH G +++G K    +  + S+   +
Sbjct: 403 NGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKL-IKNSLYLDV 461

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                ++DL G+ G +E+A  L   +  +   V W A++++
Sbjct: 462 FVATCLIDLYGKCGRLEDAMSLFYEIPRDTS-VPWNAIIAS 501



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 121/242 (50%), Gaps = 19/242 (7%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLS----SKVEPDKFTFASVIYGCARLGALNH 59
           K++ SWNS+I  +VR  ++ EA+    ++ S      + PD +TF  ++  C    +L  
Sbjct: 83  KNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV---SLVD 139

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              VH  + +   E +  ++A+L+ +YS+ G + +A +VF  +   DV  WNAMISG   
Sbjct: 140 GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQ 199

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G AA A  +  +M+   V  D+IT   +L  C+    V  G     H+  ++ +   + 
Sbjct: 200 NGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVL-KHGLDSDVF 258

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL----------SACRTFKRLELG 229
              A++++  + G +++A  +   M +  D+V W +++          +A R FK ++LG
Sbjct: 259 VSNALINMYSKFGRLQDAQMVFDQMEVR-DLVSWNSIIAAYEQNNDPSTALRFFKGMQLG 317

Query: 230 EV 231
            +
Sbjct: 318 GI 319



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 109/219 (49%), Gaps = 1/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KDV SWN+MI GF +N     AL     M    V+ D  T AS++  CA+   + + 
Sbjct: 182 MPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVING 241

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++  ++ +  +S ALI+MYSK G++Q A+ VFD ++  D+  WN++I+    +
Sbjct: 242 VLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQN 301

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
              + A   F  M++  + PD +T + L +  S        R     +  R  +   +  
Sbjct: 302 NDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVI 361

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A+V++  + G++  A+ +   +  + D + W  L++ 
Sbjct: 362 GNALVNMYAKLGYMNCAHTVFDQLPRK-DTISWNTLVTG 399



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 28/188 (14%)

Query: 44  FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           F ++   C  + A      +H L++      N +LS  LI++Y   G I +++  FD + 
Sbjct: 25  FNALFNSCVNVNATKK---LHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIH 81

Query: 104 RNDVSVWNAMISGVAIHGLAADA----SAIFTKMEMFNVLPDSITFLGLLTAC------- 152
           + ++  WN++IS     G   +A    + +F+     ++ PD  TF  +L AC       
Sbjct: 82  KKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVDGK 141

Query: 153 -SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
             HC + + G             +  +    ++V L  R G ++ A+ +   M ++ DV 
Sbjct: 142 KVHCCVFKMG------------FEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVK-DVG 188

Query: 212 VWRALLSA 219
            W A++S 
Sbjct: 189 SWNAMISG 196


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  331 bits (849), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 175/413 (42%), Positives = 251/413 (60%), Gaps = 7/413 (1%)

Query: 4    KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
            +D VSWNSMI G++ N    E +     M+ S    D  TF+ V+  CA + AL     +
Sbjct: 643  RDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALERGMEM 702

Query: 64   HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
            H   I  ++E + ++ +AL+DMYSKCG+I  A +VF+++ + +   WN+MISG A HGL 
Sbjct: 703  HAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARHGLG 762

Query: 124  ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
              A  IF +M+     PD +TF+ +L+ACSH GLV+ G  YF+ M   + I P +EHY  
Sbjct: 763  EKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYFEMMED-HGILPHIEHYSC 821

Query: 184  MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFK---RLELGEVA---IVNIS 237
            ++DLLGRAG + +    I  M M+P+ ++WR +L ACR  K   R++LG+ A   ++ + 
Sbjct: 822  VIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRIDLGKEASRMLLELE 881

Query: 238  RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 +YVL SN Y    RW+     R  M    ++K  G+SW+ L   +H F AGDRSH
Sbjct: 882  PQNPVNYVLASNFYAATGRWEDTAKARAAMGGAAMKKEAGQSWVTLGDGVHTFIAGDRSH 941

Query: 298  PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            P  + I + L  LIQ+ K+ G++P TE  L D+ EE KE  L +HSEKLA+A+ + ++S 
Sbjct: 942  PNTKEIYEKLNFLIQKIKNAGYVPMTEFALYDLEEENKEELLSYHSEKLAVAFVLTRSSS 1001

Query: 358  GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
               IRI KNLR+C DCH+  + IS+++ R II+RD IRFH FE G CSCGDYW
Sbjct: 1002 DVPIRIMKNLRVCGDCHTAFRYISQIVCRQIILRDSIRFHHFEDGKCSCGDYW 1054



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 109/217 (50%), Gaps = 2/217 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D VSWN++I    +N   + A+  +  M    + P  F   S +  CA L  L     V
Sbjct: 439 RDRVSWNTIISVLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQV 498

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS-GVAIHGL 122
           H   ++  ++L+  +S AL+ MY  CG    + E+F+++  +D+  WN+++   V+ H  
Sbjct: 499 HCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAP 558

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
            A++  +F+ M    + P+ +TF+ LL+A S   ++E G++    +    +I+       
Sbjct: 559 TAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVD-N 617

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A++    ++G ++    L +SM+   D V W +++S 
Sbjct: 618 ALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISG 654



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 117/239 (48%), Gaps = 15/239 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRN-ARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           M + D+VSWNS++G  V + A   E++  F  M+ S + P+K TF +++   + L  L  
Sbjct: 537 MAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLEL 596

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
              VH ++++     +  +  AL+  Y+K G +   +++F ++  R D   WN+MISG  
Sbjct: 597 GKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYI 656

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            +G   +       M   N + D  TF  +L AC+    +E G +        + I+ QL
Sbjct: 657 YNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALERGMEMH-----AFGIRSQL 711

Query: 179 EH----YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI 233
           E       A++D+  + G I+ A  +  SM+ + +   W +++S    + R  LGE A+
Sbjct: 712 ESDVVVESALLDMYSKCGRIDYASKVFNSMS-QKNEFSWNSMISG---YARHGLGEKAL 766



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 77/164 (46%), Gaps = 11/164 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML---SSKVEPDKFTFASVIYGCARLGA- 56
           M +++ VSW  ++ G+V +   DEA R F+ ML   S    P  FTF SV+  C   G  
Sbjct: 117 MLERNAVSWTCLVSGYVLSGITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPD 176

Query: 57  -LNHAYWVHNLIIEKKIELNFILSAALIDMYSKC--GKIQMAKEVFDTVQRNDVSVWNAM 113
            L  A  VH L+ +     N  +  ALI MY  C  G    A++VFDT    D+  WNA+
Sbjct: 177 LLAFAVQVHGLVSKTIYASNTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNAL 236

Query: 114 ISGVAIHGLAADASAIFTKM----EMFNVLPDSITFLGLLTACS 153
           +S  A  G       +F  M        + P+  TF  L+TA S
Sbjct: 237 MSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNEHTFGSLITATS 280



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 10/223 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG----A 56
           + +++ V+ N +I G V+    +EA+  F     S V  +  TF  ++   A        
Sbjct: 331 LKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFVV-NTDTFVVLLSAVAEFSIPEDG 389

Query: 57  LNHAYWVHNLIIEKK-IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
           L     VH  I+    I+L   LS  L++MY+KCG I  A  VF  +   D   WN +IS
Sbjct: 390 LMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIIS 449

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSI 174
            +  +G    A   +  M    + P +   +  L++C+   L+  G++ + D ++    +
Sbjct: 450 VLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDL 509

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              + +  A+V + G  G   E++ +  SM  E D+V W +++
Sbjct: 510 DTSVSN--ALVKMYGDCGARSESWEIFNSMA-EHDIVSWNSIM 549



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 1/115 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K+  SWNSMI G+ R+   ++AL  F EM  +   PD  TF SV+  C+  G ++  
Sbjct: 741 MSQKNEFSWNSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRG 800

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMI 114
                ++ +  I  +    + +ID+  + GK+   +E  + +  + +  +W  ++
Sbjct: 801 LDYFEMMEDHGILPHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVL 855



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/230 (21%), Positives = 105/230 (45%), Gaps = 19/230 (8%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREML--SSKVE--PDKFTFASVIYGCA----R 53
           P +D+++WN+++  + +          F  ML   S +E  P++ TF S+I   +     
Sbjct: 226 PVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNEHTFGSLITATSLSSCS 285

Query: 54  LGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAM 113
            G L+  +     +++     +  + +AL+  +++ G +  AK++F  ++  +    N +
Sbjct: 286 SGVLDQVF---ARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKERNAVTLNGL 342

Query: 114 ISGVAIHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEE----GRKYFDHM 168
           I G+     + +A  IF    + F V  D  TF+ LL+A +   + E+    GR+   H+
Sbjct: 343 IVGLVKQHCSEEAVGIFMGTRDSFVVNTD--TFVVLLSAVAEFSIPEDGLMRGREVHGHI 400

Query: 169 RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
                I  ++     +V++  + G I++A   +  +    D V W  ++S
Sbjct: 401 LRTGLIDLKIALSNGLVNMYAKCGAIDKA-SRVFRLLCARDRVSWNTIIS 449



 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 7/99 (7%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD-TVQRNDVSVWNAMISGVAIHG 121
           +H  ++++ +  +  LS  L+++Y+K  ++  A++VFD  ++RN VS W  ++SG  + G
Sbjct: 78  LHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVS-WTCLVSGYVLSG 136

Query: 122 LAADASAIFTKM----EMFNVLPDSITFLGLLTACSHCG 156
           +  +A  +F  M      F+  P   TF  +L AC   G
Sbjct: 137 ITDEAFRVFKAMLWEGSEFS-RPTPFTFGSVLRACQDAG 174


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  331 bits (849), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 171/413 (41%), Positives = 244/413 (59%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++ VSW+++I    +    DEAL  FR M  S + P+       +  C+ LG L   
Sbjct: 265 MPHRNDVSWSALISQLAQYGNADEALGLFRMMQVSGLHPNSGPVVGALLACSDLGLLKLG 324

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I+ + +EL+ ++  A+IDMYSKCG +  A+ +FD V   D+  WN MI+    H
Sbjct: 325 KSIHGFIL-RTLELDRMVGTAVIDMYSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAH 383

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA ++F +M+   V PD  TF  LL+A SH GLVEEG+ +F+ M + Y I+P  +H
Sbjct: 384 GRGRDALSLFQEMKRNEVRPDHATFASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKH 443

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
              +VDLL R+G +EEA GL+ S+  +P + +  ALLS C    +LELGE     I  L 
Sbjct: 444 LVCIVDLLARSGLVEEANGLVASLHSKPTISILVALLSGCLNNNKLELGESTAEKILELQ 503

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
            GD     L+SN+Y   K W     VR++MK  G +K+ G S +E+ G +H F   D+SH
Sbjct: 504 PGDVGVLALVSNLYAAAKNWYKVREVRKLMKDHGSKKAPGCSSIEIRGALHTFVMEDQSH 563

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I +++  L    +  G++P TE V  D+ E  KE  L  HSE+LA A+G+L TSP
Sbjct: 564 PQHRQILQMVMKLDSEMRKMGYIPKTEFVYHDLEEGVKEQLLSRHSERLATAFGLLNTSP 623

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT + + KNLR+C DCH  IK +S++  R I+VRD  RFH F+ G CSCGDYW
Sbjct: 624 GTRLVVIKNLRVCGDCHDAIKYMSKIADREIVVRDAKRFHHFKDGACSCGDYW 676



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 117/226 (51%), Gaps = 5/226 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D V+W++M+ GFV   +  +A+  +  M    +E D+     V+  CA  G     
Sbjct: 164 MRKRDRVTWSTMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMG 223

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAI 119
             VH  ++   ++++ ++S +L+DMY+K G    A+ VF+ +  RNDVS W+A+IS +A 
Sbjct: 224 ASVHGYLLRHAMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRNDVS-WSALISQLAQ 282

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G A +A  +F  M++  + P+S   +G L ACS  GL++ G+     +     +   + 
Sbjct: 283 YGNADEALGLFRMMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGFILRTLELDRMVG 342

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKR 225
              A++D+  + G +  A  L   + +  D++ W  +++ C    R
Sbjct: 343 --TAVIDMYSKCGSLSSAQMLFDKV-VSRDLISWNVMIACCGAHGR 385



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 103/213 (48%), Gaps = 3/213 (1%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           + +WN+++    R A   EALR FR  L     PD  TF   +  CARLG L     V +
Sbjct: 69  IPAWNALLAAHSRGASPHEALRVFRA-LPPAARPDSTTFTLALSACARLGDLATGEVVTD 127

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
                    +  + ++++++Y+KCG +  A +VFD +++ D   W+ M++G    G    
Sbjct: 128 RASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQ 187

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           A  ++ +M    +  D +  +G++ AC+  G    G     ++  R+++Q  +    ++V
Sbjct: 188 AIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLL-RHAMQMDVVISTSLV 246

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
           D+  + G  ++A  +   M    D V W AL+S
Sbjct: 247 DMYAKNGLFDQARRVFELMPHRND-VSWSALIS 278



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 108/294 (36%), Gaps = 57/294 (19%)

Query: 47  VIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRND 106
           ++  CA L  L   + +  LI+      + ILS+ L   Y++ G +  A+    T   + 
Sbjct: 9   LLSSCAALRTLTRLHAL--LIVSSSASCHHILSSCLATAYARAGDLAAAESTLATAPTSP 66

Query: 107 VSV--WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH---------- 154
            S+  WNA+++  +      +A  +F  +      PDS TF   L+AC+           
Sbjct: 67  SSIPAWNALLAAHSRGASPHEALRVFRALPP-AARPDSTTFTLALSACARLGDLATGEVV 125

Query: 155 -------------------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLG 189
                                    CG +++  K FD MR R  +      +  MV    
Sbjct: 126 TDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVT-----WSTMVTGFV 180

Query: 190 RAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELG-EVAIVNISRLMGGDYV 245
            AG   +A  +   M    +E D VV   ++ AC       +G  V    +   M  D V
Sbjct: 181 NAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVV 240

Query: 246 L---LSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
           +   L +MY     +D A  V E+M  +        SW  L   + Q+   D +
Sbjct: 241 ISTSLVDMYAKNGLFDQARRVFELMPHR-----NDVSWSALISQLAQYGNADEA 289


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  331 bits (849), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 165/414 (39%), Positives = 247/414 (59%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K+ V+W+SM+ G+V+N   +EAL  FR       + D F  +S +  CA L  L   
Sbjct: 205 MPEKNAVTWSSMMAGYVQNGFHEEALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEG 264

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAI 119
             VH +  +     N  +S++LIDMY+KCG I+ A  VF  V +   + +WNAMISG A 
Sbjct: 265 KQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFAR 324

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           H  A +A  +F KM+     PD +T++ +L ACSH GL EEG+KYFD M  ++++ P + 
Sbjct: 325 HARAPEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVL 384

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HY  M+D+LGRAG + +AY LI  M       +W +LL++C+ +  +E  E+A   +  +
Sbjct: 385 HYSCMIDILGRAGLVHKAYDLIERMPFNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEM 444

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G+++LL+N+Y   K+WD     R+++++  VRK +G SW+E+   IH F  G+R+
Sbjct: 445 EPNNAGNHILLANIYAANKKWDEVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERN 504

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+   I   L +L+   K   +   T   L DV E  K+  L HHSEKLA+ +G++   
Sbjct: 505 HPQIDDIYAKLDNLVVELKKLNYKVDTSNDLHDVEENRKQMLLRHHSEKLAITFGLMCLP 564

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
               IRI KNLRIC DCH+++K++S+   R IIVRD  RFH F+ G CSCG++W
Sbjct: 565 RDIPIRIIKNLRICGDCHTFMKLVSKSTSREIIVRDTNRFHHFKDGFCSCGEFW 618



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 109/218 (50%), Gaps = 1/218 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP K +VSWN++IG   +NA   EAL+   +M       ++FT +SV+  CA   A+   
Sbjct: 104 MPVKSLVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILEC 163

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   I+  I+ N  +  AL+ +Y+KC  I+ A ++F+++   +   W++M++G   +
Sbjct: 164 MQLHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQN 223

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  IF   ++     D       ++AC+    + EG++    +  +      +  
Sbjct: 224 GFHEEALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQ-VHAISHKSGFGSNIYV 282

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
             +++D+  + G I EAY +   +     +V+W A++S
Sbjct: 283 SSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMIS 320



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 36/173 (20%), Positives = 79/173 (45%), Gaps = 12/173 (6%)

Query: 51  CARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVW 110
           CA+  +       H  II   +E++ + S  LI+MYSKC  +  A++ F+ +    +  W
Sbjct: 53  CAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKSLVSW 112

Query: 111 NAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS-HCGLVEEGRKYFDHMR 169
           N +I  +  +    +A  +  +M+      +  T   +L  C+  C ++E  + +     
Sbjct: 113 NTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLH----- 167

Query: 170 SRYSIQPQLEHY----GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
             +SI+  ++       A++ +  +   I++A  +  SM  E + V W ++++
Sbjct: 168 -AFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMP-EKNAVTWSSMMA 218


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  331 bits (849), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 173/411 (42%), Positives = 248/411 (60%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+DVV+WN ++ GFV+N +F+EA  +F  M    + PD+ +F++V++  A L AL+    
Sbjct: 410 DRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTA 469

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+ II+     N  +  +LI MY+KCG +  A +VF+ ++ ++V  W AMIS   +HG 
Sbjct: 470 IHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGC 529

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A     +F  M    + P  +TF+ +L+ACSH G VEEG  +F+ M+  + + P  EHY 
Sbjct: 530 ANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYA 589

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            MVDLLGRAG ++EA   I SM M+P   VW ALL ACR +  L++G  A   +  +   
Sbjct: 590 CMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPY 649

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             G+YVLL+NM     R + A  VR +M   GVRK  G SW+++  +   F A DRSH  
Sbjct: 650 NPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSS 709

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           +  I K+L  L +  K +G++  TE V   + E E+E  L++HSEKLALA+G+L     +
Sbjct: 710 SDEIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLPIDS 769

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI KNLR C  CH+ +K+ S++  R IIVRD  RFHRF  G CSCGDYW
Sbjct: 770 PIRIKKNLRTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 820



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           MP++++VSWNSMI GF  N  +D A+  F+++L  K V P++ + +SV+  CA +G LN 
Sbjct: 306 MPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNF 365

Query: 60  AYWVHNLIIEKK-IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
              VH ++++   + L +++++ L+DMY KC       ++F  V   DV  WN ++ G  
Sbjct: 366 GRQVHGVVVKYGLVPLTYVMNS-LMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFV 424

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            +    +A   F  M    +LPD  +F  +L + +    + +G    D +  +      +
Sbjct: 425 QNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQI-IKLGYVKNM 483

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              G+++ +  + G + +AY +   +  + +V+ W A++SA
Sbjct: 484 CILGSLITMYAKCGSLVDAYQVFEGIE-DHNVISWTAMISA 523



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 106/215 (49%), Gaps = 3/215 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K +V+W S+I          +AL  F +M  S   P++FTF+S++   A    + H   +
Sbjct: 208 KTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQL 267

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H+LI +   + N  +  AL+DMY+KC  +  A  VFD +   ++  WN+MI G   + L 
Sbjct: 268 HSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLY 327

Query: 124 ADASAIFTK-MEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             A  +F   +    V+P+ ++   +L+AC++ G +  GR+    +  +Y + P      
Sbjct: 328 DRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHG-VVVKYGLVPLTYVMN 386

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           +++D+  +    +E   L   +  + DVV W  L+
Sbjct: 387 SLMDMYFKCRFFDEGVKLFQCVG-DRDVVTWNVLV 420



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 78/165 (47%), Gaps = 6/165 (3%)

Query: 56  ALNHAYWVHN-LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN--DVSVWNA 112
           +L HA  +H  +II     L F+ +  LI++Y+KCG +  A  +F     +   +  W +
Sbjct: 157 SLKHATQIHTQIIINNYTSLPFLFNN-LINLYAKCGCLNQALLLFSITHHHFKTIVTWTS 215

Query: 113 MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY 172
           +I+ ++   +   A ++F +M      P+  TF  +L+A +   +V  G++    +  ++
Sbjct: 216 LITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQ-LHSLIHKH 274

Query: 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
                +    A+VD+  +   +  A  +   M  E ++V W +++
Sbjct: 275 GFDANIFVGTALVDMYAKCADMHSAVRVFDQMP-ERNLVSWNSMI 318


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  331 bits (848), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 156/413 (37%), Positives = 247/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++ +V+W+S+  G+V+N   +EAL  FR      VE  +FT ++++  CA L      
Sbjct: 219 MPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVELTEFTLSAILSACASLALKIEG 278

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H +I++     NF ++A+L+D+Y++CG+I+ A  +F  ++  +V +WNAMI+  + H
Sbjct: 279 IQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRH 338

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
             + +A  +F KM+   + P+ +T+L +L+ CSH GLVE+GR YF  + S  +++P + H
Sbjct: 339 AHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNVLH 398

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  MVD+LGR+G  +EA+ L+  M  EP   +W +LL +CR +  + L  +A   + +L 
Sbjct: 399 YSCMVDVLGRSGKTDEAWELLNKMPFEPTASMWGSLLGSCRNYNNIRLARIAAEQLFQLE 458

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
              GG++VLLSN+Y     W+     R+ +K  G +K  G+SW+E  G +H F  G+R H
Sbjct: 459 PDNGGNHVLLSNVYAASGNWENVLMARKYLKDSGAKKEMGRSWIEAKGKVHVFVVGERKH 518

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    I   L  +    +      + E  L DV  E+KE  L HHSEKLAL++G++    
Sbjct: 519 PRITDIYNKLEEIYHEMRKFARRTSIECDLHDVHAEQKEELLKHHSEKLALSFGLISLPS 578

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              I I KNLRIC DCHS++K+ + +  R++IVRD  RFH F+ G CSCGD+W
Sbjct: 579 NIPIIIHKNLRICGDCHSFMKIAAHITERLVIVRDTNRFHHFKDGSCSCGDFW 631



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 108/219 (49%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  + +VSWN+MI G+  +    +AL+ F  M        +FT +S I  CA   A+N  
Sbjct: 118 MHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINEC 177

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H + ++  ++ N  +  A++D+Y+KC  I+ A  VF+ +    +  W+++ +G   +
Sbjct: 178 KQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQN 237

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  +F   +   V     T   +L+AC+   L  EG +    +  +         
Sbjct: 238 GLHEEALHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQ-LHAVILKCGFHGNFFV 296

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             ++VD+  R G IE+AY L   M    +VV+W A++++
Sbjct: 297 AASLVDVYARCGQIEKAYALFAYME-HKNVVIWNAMIAS 334



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 73/169 (43%), Gaps = 2/169 (1%)

Query: 51  CARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVW 110
           CA+  +L      H L I   +  + +    LI++Y+KCG+   A+ VFD +    +  W
Sbjct: 67  CAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSW 126

Query: 111 NAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS 170
           N MI+G    G    A  +F++M          T    + AC+    + E ++    +  
Sbjct: 127 NTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQ-LHTIAL 185

Query: 171 RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           + ++        A++D+  +   I++A  +   M  E  +V W +L + 
Sbjct: 186 KLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMP-ERTLVTWSSLFAG 233


>gi|296085848|emb|CBI31172.3| unnamed protein product [Vitis vinifera]
          Length = 644

 Score =  331 bits (848), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 173/449 (38%), Positives = 251/449 (55%), Gaps = 39/449 (8%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D+VSWN++I G  +N   ++AL   REM ++ + PD FT +SV+   A    L   
Sbjct: 196 MPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKG 255

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   I    + +  + ++LIDMY+KC ++  +  VF  + ++D   WN++I+G   +
Sbjct: 256 KEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQN 315

Query: 121 GLAADASAIFTKM------------------------------------EMFNVLPDSIT 144
           G+  +    F +M                                     M  V P+ + 
Sbjct: 316 GMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRMEGVKPNYVA 375

Query: 145 FLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
           F+ +LTACSH GLV+E  KYF+ M   Y I P LEHY A+ DLLGR G +EEAY  I+ M
Sbjct: 376 FMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDM 435

Query: 205 TMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAE 261
            +EP   VW  LL+ACR  K +EL E     +  +     G YVLLSN+Y    RW  A 
Sbjct: 436 HIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDAR 495

Query: 262 NVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLP 321
            +R  M+ KG++K    SW+E+   +H F AGD+SHP    I++ L  L+++ + EG++ 
Sbjct: 496 KLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVL 555

Query: 322 ATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMIS 381
            T  VL DV EE+K   L  HSE+LA+ +GI+ T  GT IR++KNLR+C DCH+  K IS
Sbjct: 556 DTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFIS 615

Query: 382 RLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           +++ R I+VRD  RFH F+ G CSCGD+W
Sbjct: 616 KIVGREIVVRDNSRFHHFKDGKCSCGDFW 644



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 108/245 (44%), Gaps = 33/245 (13%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
            ++W S+I  +  +  F  +L FF +ML+S   PD   F SV+  C  +  L     VH 
Sbjct: 71  TLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHG 130

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMA-----------------------------K 96
            II   +  +     AL++MYSK   ++                               +
Sbjct: 131 CIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLR 190

Query: 97  EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
           +VF+ + + D+  WN +ISG A +G+  DA  +  +M   ++ PDS T   +L   +   
Sbjct: 191 KVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYV 250

Query: 157 LVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRA 215
            + +G++   + +R+ Y     +    +++D+  +   ++++  +   M  + D + W +
Sbjct: 251 NLLKGKEIHGYAIRNGYDADVFIG--SSLIDMYAKCTRVDDSCRVFY-MLPQHDGISWNS 307

Query: 216 LLSAC 220
           +++ C
Sbjct: 308 IIAGC 312


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  331 bits (848), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 170/434 (39%), Positives = 254/434 (58%), Gaps = 34/434 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE------------------PDKF 42
           M  KD+VSWN+MI G+V   R D+AL    +M   + E                  P+  
Sbjct: 451 MNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSV 510

Query: 43  TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV 102
           T  +V+ GCA L AL     +H   +++ +  +  + +AL+DMY+KCG + +++ VF+ +
Sbjct: 511 TLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQM 570

Query: 103 QRNDVSVWNAMISGVAIHGLAADASAIFTKM-----EMFNVLPDSITFLGLLTACSHCGL 157
              +V  WN +I    +HG   +A  +F +M         + P+ +T++ +  + SH G+
Sbjct: 571 SVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGM 630

Query: 158 VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME-PDVVVWRAL 216
           V+EG   F  M++++ I+P  +HY  +VDLLGR+G IEEAY LI +M      V  W +L
Sbjct: 631 VDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSL 690

Query: 217 LSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQ 276
           L AC+  + LE+GE+A  N+       +VL  N+  Y  +      +   MK+KGVRK  
Sbjct: 691 LGACKIHQNLEIGEIAAKNL-------FVLDPNVLDYGTKQSM---LGRKMKEKGVRKEP 740

Query: 277 GKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKE 336
           G SW+E    +H+F AGD SHP+++ + + L +L  R K EG++P T  VL +V EEEKE
Sbjct: 741 GCSWIEHGDEVHKFLAGDVSHPQSKEVHEYLETLSLRMKKEGYVPDTSCVLHNVGEEEKE 800

Query: 337 GNLYHHSEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRF 396
             L  HSE+LA+A+G+L TSPGT IR++KNLR+C+DCH   K IS+++ R II+RD  RF
Sbjct: 801 TMLCGHSERLAIAFGLLNTSPGTTIRVAKNLRVCNDCHVATKFISKIVDREIILRDVRRF 860

Query: 397 HRFEGGLCSCGDYW 410
           H F  G CSCGDYW
Sbjct: 861 HHFRNGTCSCGDYW 874



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 115/222 (51%), Gaps = 10/222 (4%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           DKD+VSWN++I    +N RF+EAL +   ML S V P+  T ASV+  C+ L  L     
Sbjct: 249 DKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKE 308

Query: 63  VHNLIIEKK--IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           +H  ++     IE +F+   AL+DMY  C + +  + VFD + R  ++VWNAMI+G   +
Sbjct: 309 IHAFVLMNNDLIENSFV-GCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRN 367

Query: 121 GLAADASAIFTKMEM-FNVLPDSITFLGLLTACSHCG--LVEEGRKYFDHMRSRYSIQPQ 177
               +A  +F +M     + P+S+T   +L AC  C   L +EG         ++  +  
Sbjct: 368 EFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEG---IHSCVVKWGFEKD 424

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                A++D+  R G IE A  +  SM  + D+V W  +++ 
Sbjct: 425 KYVQNALMDMYSRMGRIEIARSIFGSMNRK-DIVSWNTMITG 465



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 116/239 (48%), Gaps = 29/239 (12%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLGALNHAYW 62
           + +  WN+MI G+VRN    EA+  F EM+    + P+  T +SV+  C R  +      
Sbjct: 352 RTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEG 411

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+ +++   E +  +  AL+DMYS+ G+I++A+ +F ++ R D+  WN MI+G  + G 
Sbjct: 412 IHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGR 471

Query: 123 AADASAIFTKMEM------------------FNVLPDSITFLGLLTACSHCGLVEEGRKY 164
             DA  +   M+                   F + P+S+T + +L  C+    + +G++ 
Sbjct: 472 HDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEI 531

Query: 165 FDHMRSRYSIQPQLEHY----GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                  Y+++  L        A+VD+  + G +  +  +   M++  +V+ W  L+ A
Sbjct: 532 -----HAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVR-NVITWNVLIMA 584



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 105/259 (40%), Gaps = 47/259 (18%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARL-GALNHAY 61
           ++D VSWNSMI    R   ++ A+  FR ML   V P  FT  SV + C+ L   L    
Sbjct: 148 NRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGK 207

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            VH  ++       F  + AL+ MY+K G++  AK +FD     D+  WN +IS ++ + 
Sbjct: 208 QVHAFVLRNGDWRTFT-NNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQND 266

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSH--------------------------- 154
              +A      M    V P+ +T   +L ACSH                           
Sbjct: 267 RFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVG 326

Query: 155 CGLV---------EEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
           C LV         E+GR  FD M  R      +  + AM+    R     EA  L   M 
Sbjct: 327 CALVDMYCNCKQPEKGRLVFDGMFRR-----TIAVWNAMIAGYVRNEFDYEAIELFVEMV 381

Query: 206 ME----PDVVVWRALLSAC 220
            E    P+ V   ++L AC
Sbjct: 382 FELGLSPNSVTLSSVLPAC 400



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 98/211 (46%), Gaps = 6/211 (2%)

Query: 19  NARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFIL 78
           ++ F +A+  +  M+++ V PD F F +V+   A +  LN    +H  + +    L   +
Sbjct: 63  SSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAV 122

Query: 79  SAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNV 138
             +L++MY KCG I  A+ VFD +   D   WN+MI+          A  +F  M + NV
Sbjct: 123 PNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENV 182

Query: 139 LPDSITFLGLLTACSHC--GLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196
            P S T + +  ACS+   GL+   + +   +R+      +     A+V +  + G + E
Sbjct: 183 GPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNG---DWRTFTNNALVTMYAKLGRVYE 239

Query: 197 AYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
           A  L      + D+V W  ++S+     R E
Sbjct: 240 AKTLFDVFD-DKDLVSWNTIISSLSQNDRFE 269


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  331 bits (848), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 166/414 (40%), Positives = 246/414 (59%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE-PDKFTFASVIYGCARLGALNH 59
           MP + + +W ++I GFVR+     A++ F +M    V   D F  +S I G A L A   
Sbjct: 197 MPGRTLFAWTALISGFVRSGESVSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVL 256

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H+L +      + I+  A++DMYSKC  I  A+EVF+ +   D+  W  M+ G A 
Sbjct: 257 GRQLHSLTMRLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQ 316

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG A +A +++ +M +  V P+ +TF+GL+ ACSH GLV++GR+ FD M+  Y I P+L+
Sbjct: 317 HGRAEEAFSLYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQ 376

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY   +DLL R+GH+ EA  LIT+M   PD   W +LLSAC+ +   E+      N+  L
Sbjct: 377 HYTCYLDLLSRSGHLAEAEELITTMPYVPDEATWASLLSACKKYNNAEMSIRVADNLLEL 436

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                  YVLLSN+Y    +WD+ + VR++M    +RK  G SW+E+      F AG+  
Sbjct: 437 RPKYPSTYVLLSNVYAVNGKWDSVDTVRKLMADMEIRKEPGYSWIEVGREFRLFHAGEVP 496

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
               + I   L  L+   +  G++P T  V+ D+ E EKE +L  HSE+LA+A+GIL++ 
Sbjct: 497 IDLREEILGFLEELVSEMRQRGYVPDTSSVMHDLEEHEKEHHLCLHSERLAVAFGILRSP 556

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G+ IR+ KNLR+C+DCH+ +K IS + +R IIVRD  RFH FEGG CSC ++W
Sbjct: 557 LGSVIRVVKNLRVCNDCHTVMKFISEIFQRKIIVRDASRFHHFEGGKCSCSEFW 610



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 9/171 (5%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNHA 60
           P +D+  ++S++     +   +  L   R MLS+  + PD F  AS+    ARL +L   
Sbjct: 65  PRRDLHLYSSLLAAVSHSESPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLG 124

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   +      + ++ ++LIDMY KCG    A++VFD++   +  +W A+ISG  ++
Sbjct: 125 KQLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYVLN 184

Query: 121 GLAADASAIFTKMEMFNVLPDSITF--LGLLTACSHCGLVEEGRKYFDHMR 169
           G + +A      +E+F  +P    F    L++     G      K F  MR
Sbjct: 185 GRSDEA------LELFRSMPGRTLFAWTALISGFVRSGESVSAVKLFVDMR 229


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  331 bits (848), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 173/411 (42%), Positives = 249/411 (60%), Gaps = 4/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+DVV+WN MI G  R   F++A  +F+ M+   VEPD+ +++S+ +  A + AL     
Sbjct: 362 DRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTM 421

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+ +++     N  +S++L+ MY KCG +  A +VF   + ++V  W AMI+    HG 
Sbjct: 422 IHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGC 481

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A +A  +F +M    V+P+ ITF+ +L+ACSH G +++G KYF+ M + ++I+P LEHY 
Sbjct: 482 ANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYA 541

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG-EVA--IVNISRL 239
            MVDLLGR G +EEA   I SM  EPD +VW ALL AC     +E+G EVA  +  +   
Sbjct: 542 CMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPD 601

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             G+Y+LLSN+Y      + A+ VR +M   GVRK  G SW+++      F A DRSH  
Sbjct: 602 NPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSR 661

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
            Q I  +L  L +  K  G++  T+     V E  +E +L+ HSEKLALA+G+L   PG+
Sbjct: 662 TQEIYGMLQKLKELIKRRGYVAETQFATNSV-EGSEEQSLWCHSEKLALAFGLLVLPPGS 720

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            +RI KNLR C DCH+ +K  S + +R IIVRD  RFHRF  G CSC DYW
Sbjct: 721 PVRIKKNLRTCGDCHTVMKFASEIFQREIIVRDINRFHRFTNGSCSCMDYW 771



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 119/228 (52%), Gaps = 8/228 (3%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P  +VV+W ++I    R+ +  +AL FF  M ++ + P+ FTF++++  CA    L+   
Sbjct: 161 PSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQ 220

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H LI +     +  ++ AL+DMY+KCG + +A+ VFD +   ++  WN+MI G   + 
Sbjct: 221 QIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNK 280

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE--GRKYFDHMRSRYSIQPQLE 179
           L   A  +F   E+ ++ PD ++   +L+AC+  GLVE   G++    +  R  +   + 
Sbjct: 281 LYGRAIGVFR--EVLSLGPDQVSISSVLSACA--GLVELDFGKQVHGSIVKR-GLVGLVY 335

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
              ++VD+  + G  E+A  L      + DVV W  ++  C   +  E
Sbjct: 336 VKNSLVDMYCKCGLFEDATKLFCG-GGDRDVVTWNVMIMGCFRCRNFE 382



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 112/219 (51%), Gaps = 6/219 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +++VSWNSMI GFV+N  +  A+  FRE+LS  + PD+ + +SV+  CA L  L+  
Sbjct: 261 MPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLS--LGPDQVSISSVLSACAGLVELDFG 318

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  I+++ +     +  +L+DMY KCG  + A ++F      DV  WN MI G    
Sbjct: 319 KQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRC 378

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
                A   F  M    V PD  ++  L  A +    + +G     H +++ +    ++ 
Sbjct: 379 RNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRIS 438

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
              ++V + G+ G + +AY +    T E +VV W A+++
Sbjct: 439 --SSLVTMYGKCGSMLDAYQVFRE-TKEHNVVCWTAMIT 474



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 102/258 (39%), Gaps = 45/258 (17%)

Query: 39  PDKFTFASV------IYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKI 92
           P    F+SV      +   A+L +L HA  +H+ ++      +      L+ +Y+KCG I
Sbjct: 89  PKFHQFSSVPDLKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSI 148

Query: 93  QMAKEVFDTVQR--NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150
                +F+T      +V  W  +I+ ++       A   F +M    + P+  TF  +L 
Sbjct: 149 HHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILP 208

Query: 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM------ 204
           AC+H  L+ EG++    +     +        A++D+  + G +  A  +   M      
Sbjct: 209 ACAHAALLSEGQQIHALIHKHCFLNDPFV-ATALLDMYAKCGSMLLAENVFDEMPHRNLV 267

Query: 205 --------------------------TMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
                                     ++ PD V   ++LSAC     L+ G+    +I +
Sbjct: 268 SWNSMIVGFVKNKLYGRAIGVFREVLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVK 327

Query: 239 --LMGGDYV--LLSNMYC 252
             L+G  YV   L +MYC
Sbjct: 328 RGLVGLVYVKNSLVDMYC 345


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  331 bits (848), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 172/413 (41%), Positives = 251/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++  V+W+SM+ G+V+N  ++EAL  F    +  +E ++FT +S +  CA   AL   
Sbjct: 209 MPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEG 268

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V  +  +  I  N  + ++LIDMY+KCG I+ A  VF +V+  +V +WNA++SG + H
Sbjct: 269 KQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRH 328

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
             + +A   F KM+   + P+ IT++ +L+ACSH GLVE+GRKYFD M   +++ P + H
Sbjct: 329 VRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLH 388

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  MVD+LGRAG + EA   I  M  +    +W +LL++CR ++ LEL EVA   +  I 
Sbjct: 389 YSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIE 448

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G++VLLSN+Y    RW+     R ++K+   +K +GKSW+E+   +H F  G+R+H
Sbjct: 449 PHNAGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNH 508

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    I   L  L+   K  G+   TE  L DV E  K+  L HHSEKLAL +GI+    
Sbjct: 509 PRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPH 568

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KNLRIC DCHS++K+ S +  R IIVRD  RFH F+ G CSCG++W
Sbjct: 569 GAPIRIMKNLRICGDCHSFMKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 621



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 120/219 (54%), Gaps = 4/219 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP + +VSWN+M+G   +N   ++AL  F +M        +FT +SV+  CA    +   
Sbjct: 108 MPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFEC 167

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAI 119
             +H   ++  ++ N  +  AL+D+Y+KCG ++ A  VF+ + +R+DV+ W++M++G   
Sbjct: 168 KQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVT-WSSMVAGYVQ 226

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           + L  +A  +F + +   +  +  T    L+AC+    + EG++    +  +  I   + 
Sbjct: 227 NELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQ-VQAVSCKTGIGSNIF 285

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
              +++D+  + G IEEAY + +S+  E +VV+W A+LS
Sbjct: 286 VISSLIDMYAKCGIIEEAYTVFSSVE-EKNVVLWNAILS 323



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 83/179 (46%), Gaps = 13/179 (7%)

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  II   +  + I S  L++MYSKCG ++ A+++FD +    +  WN M+     +G  
Sbjct: 70  HAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDC 129

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY-- 181
             A  +F +M+         T   ++ AC+    V E ++        ++++  L+    
Sbjct: 130 EKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHG-----FALKTALDSNVF 184

Query: 182 --GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
              A++D+  + G +++A  +   M    D V W ++++    + + EL E A+V   R
Sbjct: 185 VGTALLDVYAKCGLVKDANLVFECMPERSD-VTWSSMVAG---YVQNELYEEALVLFHR 239


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  331 bits (848), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 173/411 (42%), Positives = 248/411 (60%), Gaps = 3/411 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+DVV+WN ++ GFV+N +F+EA  +F  M    + PD+ +F++V++  A L AL+    
Sbjct: 175 DRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTA 234

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+ II+     N  +  +LI MY+KCG +  A +VF+ ++ ++V  W AMIS   +HG 
Sbjct: 235 IHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGC 294

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A     +F  M    + P  +TF+ +L+ACSH G VEEG  +F+ M+  + + P  EHY 
Sbjct: 295 ANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYA 354

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            MVDLLGRAG ++EA   I SM M+P   VW ALL ACR +  L++G  A   +  +   
Sbjct: 355 CMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPY 414

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             G+YVLL+NM     R + A  VR +M   GVRK  G SW+++  +   F A DRSH  
Sbjct: 415 NPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSS 474

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           +  I K+L  L +  K +G++  TE V   + E E+E  L++HSEKLALA+G+L     +
Sbjct: 475 SDEIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLPIDS 534

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IRI KNLR C  CH+ +K+ S++  R IIVRD  RFHRF  G CSCGDYW
Sbjct: 535 PIRIKKNLRTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 585



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 118/221 (53%), Gaps = 5/221 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           MP++++VSWNSMI GF  N  +D A+  F+++L  K V P++ + +SV+  CA +G LN 
Sbjct: 71  MPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNF 130

Query: 60  AYWVHNLIIE-KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
              VH ++++   + L +++++ L+DMY KC       ++F  V   DV  WN ++ G  
Sbjct: 131 GRQVHGVVVKFGLVPLTYVMNS-LMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFV 189

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            +    +A   F  M    +LPD  +F  +L + +    + +G    D +     ++  +
Sbjct: 190 QNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVK-NM 248

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              G+++ +  + G + +AY +   +  + +V+ W A++SA
Sbjct: 249 CILGSLITMYAKCGSLVDAYQVFEGIE-DHNVISWTAMISA 288



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 93/187 (49%), Gaps = 3/187 (1%)

Query: 32  MLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK 91
           M  S   P++FTF+S++   A    + H   +H+LI +   + N  +  AL+DMY+KC  
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD 60

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTK-MEMFNVLPDSITFLGLLT 150
           +  A  VFD +   ++  WN+MI G   + L   A  +F   +    V+P+ ++   +L+
Sbjct: 61  MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLS 120

Query: 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
           AC++ G +  GR+    +  ++ + P      +++D+  +    +E   L   +  + DV
Sbjct: 121 ACANMGGLNFGRQVHG-VVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVG-DRDV 178

Query: 211 VVWRALL 217
           V W  L+
Sbjct: 179 VTWNVLV 185


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  331 bits (848), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 166/412 (40%), Positives = 261/412 (63%), Gaps = 5/412 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + + V+W S+I G V+N R + AL  FR+ML S + P+ FT +SV+  C+ L  L     
Sbjct: 341 NPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQ 400

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H ++++  ++++  + AALID Y KCG  ++A+ VF+ +   DV   N+MI   A +G 
Sbjct: 401 IHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGF 460

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F+ M+   + P+++T+LG+L+AC++ GL+EEG   F   R+  +I+   +HY 
Sbjct: 461 GHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYA 520

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            MVDLLGRAG ++EA  LI  + +  DVV+WR LLSACR    +E+ +     +++++  
Sbjct: 521 CMVDLLGRAGRLKEAEMLINQVNI-SDVVIWRTLLSACRIHGDVEMAKRVMNRVIDLAPE 579

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
            GG +VLLSN+Y     W     ++  M++  ++K+   SW+++   IH F AGD SHP 
Sbjct: 580 DGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHTFMAGDWSHPN 639

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS-PG 358
            + I + L  LI++ K  G++P T  VL D+ EE+K  +LY+HSEKLA+A+ + +++   
Sbjct: 640 FRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKKIRSLYYHSEKLAVAFALWRSNYKN 699

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T IRI KNLR+C DCH+W+K +S+++ R II RD  RFH F  GLCSCGDYW
Sbjct: 700 TTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFHHFRNGLCSCGDYW 751



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 112/218 (51%), Gaps = 3/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P + +V+WNSMI  ++RN R  EA+  ++ M+   + PD+FTF+SV    + LG ++  
Sbjct: 136 VPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEG 195

Query: 61  YWVHNLIIEKKIEL-NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              H   +   + + N  + +AL+DMY+K GK++ A+ V D V   DV ++ A+I G + 
Sbjct: 196 QRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSH 255

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   ++  +F  M    +  +  T   +L  C +   +  GR     +  +  ++  + 
Sbjct: 256 HGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGR-LIHGLIVKAGLESAVA 314

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              +++ +  R G ++++  +     + P+ V W +++
Sbjct: 315 SQTSLLTMYYRCGLVDDSLKVFKQF-INPNQVTWTSVI 351



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 114/260 (43%), Gaps = 35/260 (13%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDVV + ++I G+  +    E+L+ FR M    +E +++T +SV+  C  L  L     +
Sbjct: 241 KDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLI 300

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H LI++  +E       +L+ MY +CG +  + +VF      +   W ++I G+  +G  
Sbjct: 301 HGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGRE 360

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A   F +M   ++ P+S T   +L ACS   ++E+G++    +  ++ +        A
Sbjct: 361 EIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQ-IHAIVMKFGLDIDKYVGAA 419

Query: 184 MVDLLGRAGHIE-------------------------------EAYGLITSMT---MEPD 209
           ++D  G+ G  E                               EA  L + M    +EP+
Sbjct: 420 LIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPN 479

Query: 210 VVVWRALLSACRTFKRLELG 229
            V W  +LSAC     LE G
Sbjct: 480 NVTWLGVLSACNNAGLLEEG 499



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 71/140 (50%), Gaps = 1/140 (0%)

Query: 78  LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFN 137
           L   LID Y KCG +  A++VFD V    +  WN+MI+    +G + +A  I+ +M    
Sbjct: 112 LGNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDG 171

Query: 138 VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEA 197
           +LPD  TF  +  A S  GLV EG++              +    A+VD+  + G + +A
Sbjct: 172 ILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDA 231

Query: 198 YGLITSMTMEPDVVVWRALL 217
             L++   +  DVV++ AL+
Sbjct: 232 R-LVSDQVVGKDVVLFTALI 250


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  330 bits (847), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 171/414 (41%), Positives = 247/414 (59%), Gaps = 8/414 (1%)

Query: 5   DVVSWNSMIGGFVRNARFDE-ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           D+V WN+MI GF       E  L  FREM  +   PD  +F  V   C+ L + +    V
Sbjct: 309 DLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQV 368

Query: 64  HNLIIEKKIELNFI-LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           H L I+  +  N + ++ AL+ MYSKCG +  A+ VFDT+  ++    N+MI+G A HG+
Sbjct: 369 HALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGV 428

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             ++  +F  M   ++ P+SITF+ +L+AC H G VEEG+KYF+ M+ R+ I+P+ EHY 
Sbjct: 429 EVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYS 488

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL--- 239
            M+DLLGRAG ++EA  +I +M   P  + W  LL ACR    +EL   A     RL   
Sbjct: 489 CMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPY 548

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
               YV+LSNMY    RW+ A  V+ +M+++GV+K  G SW+E+   +H F A D SHP 
Sbjct: 549 NAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPM 608

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLM---DVSEEEKEGNLYHHSEKLALAYGILKTS 356
            + I   +G ++++ K  G++P     L+   +V  +E+E  L +HSEKLA+A+G++ T 
Sbjct: 609 IKEIHVYMGKMLKKMKQAGYVPDIRWALVKDEEVEPDERERRLLYHSEKLAVAFGLISTE 668

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  I + KNLRIC DCH+ +K+IS L  R I VRD  RFH F+ G CSC DYW
Sbjct: 669 EGVPILVVKNLRICGDCHNAVKLISALTGREITVRDTHRFHCFKEGHCSCRDYW 722



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 121/270 (44%), Gaps = 50/270 (18%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D VSWN+MI    ++    EA+  FREM+   ++ D FT ASV+     +  L      
Sbjct: 206 RDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGRQF 265

Query: 64  HNLIIEKKIELNFILSAALIDMYSKC-GKIQMAKEVFDTVQRNDVSVWNAMISGVAIH-G 121
           H ++I+     N  + + LID+YSKC G +   ++VF+ +   D+ +WN MISG +++  
Sbjct: 266 HGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGFSLYED 325

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSH--------------------------- 154
           L+ D    F +M+     PD  +F+ + +ACS+                           
Sbjct: 326 LSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVN 385

Query: 155 ---------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEA-----YGL 200
                    CG V + R+ FD M    ++        +M+   G A H  E      + L
Sbjct: 386 NALVAMYSKCGNVHDARRVFDTMPEHNTVS-----LNSMI--AGYAQHGVEVESLRLFEL 438

Query: 201 ITSMTMEPDVVVWRALLSACRTFKRLELGE 230
           +    + P+ + + A+LSAC    ++E G+
Sbjct: 439 MLEKDIAPNSITFIAVLSACVHTGKVEEGQ 468



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 5/145 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+ + VS NSMI G+ ++    E+LR F  ML   + P+  TF +V+  C   G +   
Sbjct: 408 MPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEG 467

Query: 61  YWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV-WNAMISGVA 118
               N++ E+  IE      + +ID+  + GK++ A+ + +T+  N  S+ W  ++    
Sbjct: 468 QKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACR 527

Query: 119 IHG---LAADASAIFTKMEMFNVLP 140
            HG   LA  A+  F ++E +N  P
Sbjct: 528 KHGNVELAVKAANEFLRLEPYNAAP 552



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 108/233 (46%), Gaps = 14/233 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  D+VS+N++I  +         LR F E+   ++  D FT + VI  C     L   
Sbjct: 101 IPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRELRLGLDGFTLSGVITACGDDVGL--V 158

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV----QRNDVSVWNAMISG 116
             +H  ++    +    ++ A++  YS+ G +  A+ VF  +     R++VS WNAMI  
Sbjct: 159 RQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFREMGEGGGRDEVS-WNAMIVA 217

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQ 175
              H    +A  +F +M    +  D  T   +LTA +    +  GR++   M +S +   
Sbjct: 218 CGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGN 277

Query: 176 PQLEHYGA-MVDLLGR-AGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRL 226
               H G+ ++DL  + AG + E   +   +T  PD+V+W  ++S    ++ L
Sbjct: 278 ---SHVGSGLIDLYSKCAGSMVECRKVFEEIT-APDLVLWNTMISGFSLYEDL 326



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 23/151 (15%)

Query: 81  ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP 140
            LI+ Y+K   I +A+ VFD + + D+  +N +I+  A  G       +F ++    +  
Sbjct: 80  TLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRELRLGL 139

Query: 141 DSITFLGLLTACS---------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRA 191
           D  T  G++TAC          HC +V  G   +  + +            A++    R 
Sbjct: 140 DGFTLSGVITACGDDVGLVRQLHCFVVVCGHDCYASVNN------------AVLACYSRK 187

Query: 192 GHIEEAYGLITSMTMEP--DVVVWRALLSAC 220
           G + EA  +   M      D V W A++ AC
Sbjct: 188 GFLSEARRVFREMGEGGGRDEVSWNAMIVAC 218



 Score = 44.7 bits (104), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 43  TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV 102
           TF +++  C     L     +H L  +  I  +  LS     +YSKCG +  A+  F   
Sbjct: 11  TFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLT 70

Query: 103 QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR 162
           Q  +V  +N +I+  A H L   A  +F ++      PD +++  L+ A +  G      
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQ----PDIVSYNTLIAAYADRGECGPTL 126

Query: 163 KYFDHMR 169
           + F+ +R
Sbjct: 127 RLFEEVR 133


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  330 bits (847), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 164/412 (39%), Positives = 241/412 (58%), Gaps = 6/412 (1%)

Query: 4    KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
            +D VSWNSMI G++ N    +A+     M+      D FTFA+V+  CA +  L     V
Sbjct: 657  QDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEV 716

Query: 64   HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
            H   +   +E + ++ +AL+DMY+KCG+I  A   F+ +   ++  WN+MISG A HG  
Sbjct: 717  HGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHG 776

Query: 124  ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
              +  +F +M++   LPD +TF+G+L+ACSH GLV EG  +FD M   Y + P++EH+  
Sbjct: 777  TKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSC 836

Query: 184  MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC--RTFKRLELGEVA---IVNISR 238
            MVDLLGR G + +    +  M ++P+V++WR +L AC     +   LG  A   ++ +  
Sbjct: 837  MVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEP 896

Query: 239  LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
                +Y+LLSNMY    +WD     R  M+K  V+K  G SW+ +   +H F AGD+SHP
Sbjct: 897  TNAVNYILLSNMYASGGKWDDVAKTRVAMRKAFVKKEAGCSWVTMKDGVHVFVAGDKSHP 956

Query: 299  EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
            E   I + L  L  + +  G++P T   L D+  E KE  L +HSEK+A+A+ +L     
Sbjct: 957  EKDLIYEKLKELNGKMRLAGYIPETRFALYDLEGESKEELLSYHSEKIAVAF-VLTRPSK 1015

Query: 359  TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IRI KNLR+C DCHS  K IS+++ R I++RD  RFH FE G CSCGD+W
Sbjct: 1016 MPIRILKNLRVCGDCHSAFKYISQIVERQIVLRDSNRFHHFENGKCSCGDFW 1067



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 140/317 (44%), Gaps = 51/317 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +KD V+WNSMI G  +N +F EA++ F+EM  +++ P  FT  S +  CA LG ++  
Sbjct: 450 MDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVG 509

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++  ++L+  +S AL+ +Y +CG ++  ++ F  +   D   WN++I      
Sbjct: 510 EQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIG----- 564

Query: 121 GLAADASAIFTKMEMFNVL------PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI 174
            LA    ++   +E F V+      P+ +TF+ +L A S   L E G++    +  R ++
Sbjct: 565 ALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKR-NV 623

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRAL------------------ 216
                   A++   G+ G +     + + M+   D V W ++                  
Sbjct: 624 AADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVW 683

Query: 217 -----------------LSACRTFKRLELG-EVAIVNISRLMGGDYVL---LSNMYCYLK 255
                            LSAC T   LE G EV   ++   +  D V+   L +MY    
Sbjct: 684 FMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCG 743

Query: 256 RWDTAENVREIMKKKGV 272
           R D A    E+M  + +
Sbjct: 744 RIDYASRFFEMMPARNL 760



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 99/215 (46%), Gaps = 12/215 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG--ALN 58
           MP +++VSW+ +I G+ RN   +EA   FR+M+S    P+ + F SVI  C   G   L 
Sbjct: 134 MPLRNLVSWSCLISGYTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLK 193

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKC-GKIQMAKEVFDTVQRNDVSVWNAMISGV 117
               +H L+ + +   +   S  LI MY    G +  A+  FD++   ++   N+MIS  
Sbjct: 194 FGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVY 253

Query: 118 AIHGLAADASAIFTKME---MFNVL-PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
              G A  A  IF+ M+   M + L P+  TF  L++A   C L   G    + + +R  
Sbjct: 254 CQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLISAT--CSLANSGLVLLEQLLTRVE 311

Query: 174 IQPQLEHY---GAMVDLLGRAGHIEEAYGLITSMT 205
               L       A+V    +AG I  A  +   M+
Sbjct: 312 KSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMS 346



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 109/228 (47%), Gaps = 16/228 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSS-KVEPDKFTFA-------SVIYGCA 52
           M  ++VVS N +I G VR  R +EA+  F EM  S ++ P+ +           V+    
Sbjct: 345 MSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSYMIILTAFPEFHVLENGK 404

Query: 53  RLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA 112
           R G+  HA+ + + ++  +I +       LI+MY+KCG I  A  VF  +   D   WN+
Sbjct: 405 RKGSEVHAFLIRSGLLNAQIAI----GNGLINMYAKCGAINDACVVFRLMDNKDSVTWNS 460

Query: 113 MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-R 171
           MI+G+  +    +A   F +M    + P + T +  L++C+  G +  G +   H    +
Sbjct: 461 MITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQL--HCEGLK 518

Query: 172 YSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +   +    A++ L G  G+++E      S+ ++ D V W +L+ A
Sbjct: 519 LGLDLDVSVSNALLALYGECGYVKECQKAF-SLMLDYDHVSWNSLIGA 565



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 109/260 (41%), Gaps = 45/260 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRN-ARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           M D D VSWNS+IG    +     EA+  F  M+ +  +P++ TF +++   + L     
Sbjct: 551 MLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHEL 610

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
              +H L++++ +  +  +  AL+  Y KCG +   + +F  +  R D   WN+MISG  
Sbjct: 611 GKQIHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYI 670

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC-------------------------- 152
            + L   A  +   M       D  TF  +L+AC                          
Sbjct: 671 HNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIV 730

Query: 153 ---------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
                    + CG ++   ++F+ M +R      L  + +M+    R GH  ++  L   
Sbjct: 731 IGSALVDMYAKCGRIDYASRFFEMMPAR-----NLYSWNSMISGYARHGHGTKSLDLFAQ 785

Query: 204 MTME---PDVVVWRALLSAC 220
           M ++   PD V +  +LSAC
Sbjct: 786 MKLQGPLPDHVTFVGVLSAC 805



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           +  L   LI++Y++ G +   ++VFD +   ++  W+ +ISG   + +  +A  +F KM 
Sbjct: 107 DLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACELFRKMV 166

Query: 135 MFNVLPDSITFLGLLTACSHCGLVEEGRKY 164
               +P+   F  ++ AC  CG  E G K+
Sbjct: 167 SDGFMPNHYAFGSVIRACQECG--EYGLKF 194



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +++ SWNSMI G+ R+    ++L  F +M      PD  TF  V+  C+  G +N  
Sbjct: 755 MPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEG 814

Query: 61  Y 61
           +
Sbjct: 815 F 815


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  330 bits (847), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 167/437 (38%), Positives = 247/437 (56%), Gaps = 27/437 (6%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYG---------- 50
            M ++++ +WNS++ G+     F++ALR   +M    ++PD  T+  +I G          
Sbjct: 972  MKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKA 1031

Query: 51   --------------CARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAK 96
                          CA L  L     +H L I      +  ++ ALIDMYSK   ++ A 
Sbjct: 1032 FMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAH 1091

Query: 97   EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
            +VF  +Q   ++ WN MI G AI GL  +A ++F +M+   V PD+ITF  LL+AC + G
Sbjct: 1092 KVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSG 1151

Query: 157  LVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRAL 216
            L+ EG KYFD M + Y I P+LEHY  MVDLLGRAG+++EA+ LI +M ++PD  +W AL
Sbjct: 1152 LIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGAL 1211

Query: 217  LSACRTFKRLELGEVAIVNISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVR 273
            L +CR  K L   E A  N+ +L      +Y+L+ N+Y    RW+  +++RE+M   GVR
Sbjct: 1212 LGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVR 1271

Query: 274  KSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEE 333
              Q  SW+++   +H F + ++ HP+A  I   L  L+   K  G++P    V  ++ E 
Sbjct: 1272 NRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEV 1331

Query: 334  EKEGNLYHHSEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDR 393
            EK+  L  H+EKLA+ YG++K   G  IR+ KN RIC DCHS  K IS +  R + +RD 
Sbjct: 1332 EKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDG 1391

Query: 394  IRFHRFEGGLCSCGDYW 410
            +RFH F  G CSC D+W
Sbjct: 1392 VRFHHFREGKCSCNDFW 1408



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 132/276 (47%), Gaps = 4/276 (1%)

Query: 1    MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            MP+ + + WN  I   +++ +  + +  FR+M  S ++ +  T   V+  C ++GALN A
Sbjct: 735  MPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAA 794

Query: 61   YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              +H  +    ++ +  L   LI MYSK GK+++A+ VFD+++  + S WN+MIS  A  
Sbjct: 795  KQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAAL 854

Query: 121  GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            G   DA ++F ++E  ++ PD +T+  LL+     G  EE       M+     +P    
Sbjct: 855  GFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGE-GFKPNSSS 913

Query: 181  YGAMVDLLGRAGHI---EEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
              +++  +   G +   +E +G +     + DV V  +L+        L   +    N+ 
Sbjct: 914  MTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMK 973

Query: 238  RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVR 273
                  +  L + Y +   ++ A  +   M+K+G++
Sbjct: 974  NRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIK 1009



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 78/152 (51%)

Query: 5    DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
            D+V+WN ++ G   +   +E L   + M     +P+  +  SV+   + LG LN     H
Sbjct: 875  DIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETH 934

Query: 65   NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
              ++    + +  +  +LIDMY K   +  A+ VFD ++  ++  WN+++SG +  G+  
Sbjct: 935  GYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFE 994

Query: 125  DASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
            DA  +  +ME   + PD +T+ G+++  +  G
Sbjct: 995  DALRLLNQMEKEGIKPDLVTWNGMISGYAMWG 1026



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 105/256 (41%), Gaps = 46/256 (17%)

Query: 4   KDVVSWNSMIGGFVRNA-RFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++ + WNS +  F  +A      L  F+E+    V  D   ++  +  C R+  +     
Sbjct: 636 RNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGME 695

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWN-AMISGVAIHG 121
           +H  +I++  +L+  L  AL++ Y +C  ++ A +VF  +   +  +WN A+I  +    
Sbjct: 696 IHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEK 755

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTAC----------------------------- 152
           L      +F KM+   +  ++ T + +L AC                             
Sbjct: 756 LQKGVE-LFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCN 814

Query: 153 ------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL---ITS 203
                 S  G +E  R+ FD M +R +       + +M+      G + +A+ L   + S
Sbjct: 815 PLISMYSKNGKLELARRVFDSMENRNT-----SSWNSMISSYAALGFLNDAWSLFYELES 869

Query: 204 MTMEPDVVVWRALLSA 219
             M+PD+V W  LLS 
Sbjct: 870 SDMKPDIVTWNCLLSG 885


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  330 bits (847), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 172/413 (41%), Positives = 251/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++  V+W+SM+ G+V+N  ++EAL  F    +  +E ++FT +S +  CA   AL   
Sbjct: 182 MPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEG 241

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             V  +  +  I  N  + ++LIDMY+KCG I+ A  VF +V+  +V +WNA++SG + H
Sbjct: 242 KQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRH 301

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
             + +A   F KM+   + P+ IT++ +L+ACSH GLVE+GRKYFD M   +++ P + H
Sbjct: 302 VRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLH 361

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  MVD+LGRAG + EA   I  M  +    +W +LL++CR ++ LEL EVA   +  I 
Sbjct: 362 YSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIE 421

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G++VLLSN+Y    RW+     R ++K+   +K +GKSW+E+   +H F  G+R+H
Sbjct: 422 PHNAGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNH 481

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    I   L  L+   K  G+   TE  L DV E  K+  L HHSEKLAL +GI+    
Sbjct: 482 PRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPH 541

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KNLRIC DCHS++K+ S +  R IIVRD  RFH F+ G CSCG++W
Sbjct: 542 GAPIRIMKNLRICGDCHSFMKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 594



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 120/220 (54%), Gaps = 4/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP + +VSWN+M+G   +N   ++AL  F +M        +FT +SV+  CA    +   
Sbjct: 81  MPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFEC 140

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAI 119
             +H   ++  ++ N  +  AL+D+Y+KCG ++ A  VF+ + +R+DV+ W++M++G   
Sbjct: 141 KQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVT-WSSMVAGYVQ 199

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           + L  +A  +F + +   +  +  T    L+AC+    + EG++    +  +  I   + 
Sbjct: 200 NELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQ-VQAVSCKTGIGSNIF 258

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              +++D+  + G IEEAY + +S+  E +VV+W A+LS 
Sbjct: 259 VISSLIDMYAKCGIIEEAYTVFSSVE-EKNVVLWNAILSG 297



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 81/175 (46%), Gaps = 5/175 (2%)

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  II   +  + I S  L++MYSKCG ++ A+++FD +    +  WN M+     +G  
Sbjct: 43  HAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDC 102

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  +F +M+         T   ++ AC+    V E ++       + ++   +    A
Sbjct: 103 EKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQ-LHGFALKTALDSNVFVGTA 161

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           ++D+  + G +++A  +   M    D V W ++++    + + EL E A+V   R
Sbjct: 162 LLDVYAKCGLVKDANLVFECMPERSD-VTWSSMVAG---YVQNELYEEALVLFHR 212


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  330 bits (847), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 164/414 (39%), Positives = 247/414 (59%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           M  KDV +W  M+ GF     +D A++ F +ML    ++ D      ++  C+  GAL  
Sbjct: 284 MSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQ 343

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              VH L I+     N  + +A+IDMY+ CG ++ AK  F  +   DV  WNAMI+G  +
Sbjct: 344 GRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGM 403

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G   DA  +F +M+   + PD  TF+ +L ACSH G+V EG + F HM     + P L+
Sbjct: 404 NGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQ 463

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG-EVA--IVNI 236
           HY  ++D+LGRAG ++ AY  I +M  +PD  V+  LL ACR    ++LG E++  I  +
Sbjct: 464 HYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEM 523

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVLLSNMY     W+  +  R  ++ K ++K  G S +E+   I+ F AG++ 
Sbjct: 524 EPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQEIYTFMAGEKD 583

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+   I+ IL  LI + K  G++P T ++L DVS++ K+  LYHHSEK+A+A+G+++T 
Sbjct: 584 HPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTK 643

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           P T IRI+KNLR C DCH+  K +S++  RV++++D  RFH F+ G+CSC DYW
Sbjct: 644 PETIIRITKNLRTCDDCHTASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 117/219 (53%), Gaps = 4/219 (1%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P K+VVSW  +I G  +N  F EA+  FREM+    +P+  T +SV+   A LG +  A 
Sbjct: 83  PYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAK 142

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            VH   +    E N  +  AL+DMYSK G + +A+++F+++   +V  WNA++SG + HG
Sbjct: 143 SVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHG 202

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEH 180
            + +A  +F  M    +L D  T + L+ A    G ++ G       +R+ Y     ++ 
Sbjct: 203 FSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIK- 261

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A++D+      +++A+ + + M+++ DV  W  +L+ 
Sbjct: 262 -TALMDIYVSHNCVDDAHRVFSEMSVK-DVAAWTLMLTG 298



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 108/220 (49%), Gaps = 3/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++VV+WN+++ G+  +   +EA+  F  M    +  D +T  S+I     +G L   
Sbjct: 183 MSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVG 242

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  II    E +  +  AL+D+Y     +  A  VF  +   DV+ W  M++G +  
Sbjct: 243 TGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSG 302

Query: 121 GLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
                A   F KM  + N+  DSI  +G+L++CSH G +++GR+    +  +      + 
Sbjct: 303 RHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRR-VHALAIKTCFANNIF 361

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A++D+    G++E+A      M  E DVV W A+++ 
Sbjct: 362 VGSAVIDMYANCGNLEDAKRFFYGMG-EKDVVCWNAMIAG 400



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 8/197 (4%)

Query: 26  LRFFREMLSS---KVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAAL 82
             F+R + S+   ++ P     AS++     L  L     +H  II   +  N  LS +L
Sbjct: 6   FNFYRHLSSNPTQRLSPLAQPHASILRKLKDLKPLQQ---IHAQIITSGLTHNTFLSNSL 62

Query: 83  IDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDS 142
           ++ Y  CG +  AK++F      +V  W  +ISG+A +    +A  +F +M M N  P++
Sbjct: 63  MNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNA 122

Query: 143 ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
           +T   +L A ++ GL+    K       R   +  +    A+VD+  + G +  A  L  
Sbjct: 123 VTISSVLPAFANLGLIRIA-KSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFE 181

Query: 203 SMTMEPDVVVWRALLSA 219
           SM+ E +VV W A++S 
Sbjct: 182 SMS-ERNVVTWNAIVSG 197


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  330 bits (846), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 169/414 (40%), Positives = 249/414 (60%), Gaps = 8/414 (1%)

Query: 5   DVVSWNSMIGGFVRNARFDE-ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           D+V WN+MI GF +     E  +  FREM  +   PD  +F  V   C+ L + +    V
Sbjct: 309 DLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQV 368

Query: 64  HNLIIEKKIELNFI-LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           H L I+  I  N + ++ AL+ MYSKCG +  A+ VFDT+  +++   N+MI+G A HG+
Sbjct: 369 HALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGV 428

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             ++  +F  M   ++ P++ITF+ +L+AC H G VEEG+KYF+ M+ R+ I+P+ EHY 
Sbjct: 429 EVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYS 488

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            M+DLLGRAG ++EA  +I +M   P  + W  LL ACR    +EL   A    + +   
Sbjct: 489 CMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLEPY 548

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
               YV+LSNMY    RW+ A  V+ +M+++GV+K  G SW+E+   +H F A D SHP 
Sbjct: 549 NAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPM 608

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLM---DVSEEEKEGNLYHHSEKLALAYGILKTS 356
            + I   +G ++++ K  G++P     L+   +V  +EKE  L +HSEKLA+A+G++ T 
Sbjct: 609 IKEIHVYMGEILRKMKQAGYVPDIRWALVKDEEVEPDEKERRLLYHSEKLAVAFGLISTE 668

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
               I + KNLRIC DCH+ IK+IS +  R I VRD  RFH F+ G CSCGDYW
Sbjct: 669 EWVPILVVKNLRICGDCHNAIKLISAITGREITVRDTHRFHCFKEGHCSCGDYW 722



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 120/270 (44%), Gaps = 50/270 (18%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D VSWN+MI    ++    EA+  FREM+   ++ D FT ASV+     +  L      
Sbjct: 206 RDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQF 265

Query: 64  HNLIIEKKIELNFILSAALIDMYSKC-GKIQMAKEVFDTVQRNDVSVWNAMISGVAIH-G 121
           H ++I+     N  + + LID+YSKC G +   ++VF+ +   D+ +WN MISG + +  
Sbjct: 266 HGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYED 325

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSH--------------------------- 154
           L+ D    F +M+     PD  +F+ + +ACS+                           
Sbjct: 326 LSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVN 385

Query: 155 ---------CGLVEEGRKYFD-----HMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL 200
                    CG V + R+ FD     +M S  S+      +G  V+ L         + L
Sbjct: 386 NALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESL-------RLFEL 438

Query: 201 ITSMTMEPDVVVWRALLSACRTFKRLELGE 230
           +    + P+ + + A+LSAC    ++E G+
Sbjct: 439 MLQKDIAPNTITFIAVLSACVHTGKVEEGQ 468



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 76/145 (52%), Gaps = 5/145 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+ ++VS NSMI G+ ++    E+LR F  ML   + P+  TF +V+  C   G +   
Sbjct: 408 MPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEG 467

Query: 61  YWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV-WNAMISGVA 118
               N++ E+ +IE      + +ID+  + GK++ A+ + +T+  N  S+ W  ++    
Sbjct: 468 QKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACR 527

Query: 119 IHG---LAADASAIFTKMEMFNVLP 140
            HG   LA  A+  F ++E +N  P
Sbjct: 528 KHGNVELAVKAANEFLQLEPYNAAP 552



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 100/231 (43%), Gaps = 10/231 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  D+VS+N++I  +        ALR F E+   +   D FT + VI  C     L   
Sbjct: 101 IPQPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSGVIIACGDDVGL--V 158

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV----QRNDVSVWNAMISG 116
             +H  ++    +    ++ A++  YS+ G +  A+ VF  +     R++VS WNAMI  
Sbjct: 159 RQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVS-WNAMIVA 217

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
              H    +A  +F +M    +  D  T   +LTA + C     G   F  M  +     
Sbjct: 218 CGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFT-CVKDLVGGMQFHGMMIKSGFHG 276

Query: 177 QLEHYGAMVDLLGR-AGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRL 226
                  ++DL  + AG + E   +   +   PD+V+W  ++S    ++ L
Sbjct: 277 NSHVGSGLIDLYSKCAGGMVECRKVFEEIA-APDLVLWNTMISGFSQYEDL 326



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 43  TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV 102
           TF +++  C     L     +H L  +  I  +  LS     +YSKCG +  A+  FD  
Sbjct: 11  TFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLT 70

Query: 103 QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR 162
           Q  +V  +N +I+  A H L   A  +F ++      PD +++  L+ A +  G      
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQ----PDIVSYNTLIAAYADRGECRPAL 126

Query: 163 KYFDHMR 169
           + F  +R
Sbjct: 127 RLFAEVR 133



 Score = 45.8 bits (107), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 23/151 (15%)

Query: 81  ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP 140
            LI+ Y+K   I +A++VFD + + D+  +N +I+  A  G    A  +F ++       
Sbjct: 80  TLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFGL 139

Query: 141 DSITFLGLLTACS---------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRA 191
           D  T  G++ AC          HC +V  G   +  + +            A++    R 
Sbjct: 140 DGFTLSGVIIACGDDVGLVRQLHCFVVVCGYDCYASVNN------------AVLACYSRK 187

Query: 192 GHIEEAYGLITSMTMEP--DVVVWRALLSAC 220
           G + EA  +   M      D V W A++ AC
Sbjct: 188 GFLNEARRVFREMGEGGGRDEVSWNAMIVAC 218


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  330 bits (846), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 164/416 (39%), Positives = 257/416 (61%), Gaps = 6/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           +  +D +SWN+MI  +V+N     A++ FREM  ++ ++PD  TF +V+  CA LG L+ 
Sbjct: 403 LGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE 462

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  I E ++E N +++  LI+MY++CG ++ A+ +F   +   V  W AM++  + 
Sbjct: 463 VKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQ 522

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G  A+A  +F +M++  V PD +T+  +L  C+H G +E+G +YF  M   +++ P  +
Sbjct: 523 YGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTAD 582

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           H+ AMVDLLGR+G + +A  L+ SM  EPD V W   L+ACR   +LELGE A   +  L
Sbjct: 583 HFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYEL 642

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                  Y+ +SN+Y     W+   +VR+ M+++G++K  G S++E+ G +H+F +G + 
Sbjct: 643 DPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKY 702

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT- 355
           HP    I + L  L    ++ G++P T+ VL DVSE EKE  L +HSEK+A+A+G++ + 
Sbjct: 703 HPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSR 762

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEG-GLCSCGDYW 410
             G  IR+ KNLR+C DCH+  K I+R+  R IIVRD  RFHRF   G CSCGDYW
Sbjct: 763 GSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIIVRDCNRFHRFSSDGKCSCGDYW 818



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 128/260 (49%), Gaps = 37/260 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D+VSWN MIG +V N  F EAL  ++++     +  K TF S++  C+ + AL   
Sbjct: 268 MKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQG 327

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ I+E+ ++    ++ AL++MY+KCG ++ A++VF+ ++  D   W+ +I   A +
Sbjct: 328 RLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASN 387

Query: 121 GLAADA------------------SAIFTK----------MEMFNVL-------PDSITF 145
           G   DA                  +A+ T           M++F  +       PD++TF
Sbjct: 388 GYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTF 447

Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
           + +L AC+  G + E +     + S   ++  +     ++++  R G +EEA  L  +  
Sbjct: 448 IAVLEACASLGRLSEVKALHAQI-SESELESNVVVTNTLINMYARCGSLEEAERLFAA-A 505

Query: 206 MEPDVVVWRALLSACRTFKR 225
            E  VV W A+++A   + R
Sbjct: 506 KEKTVVSWTAMVAAFSQYGR 525



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 113/219 (51%), Gaps = 3/219 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  +D  SWN++I    ++  +  ALR F+EM    V+P+  T+ +VI G +    L   
Sbjct: 168 LQTRDETSWNAVILAHSQSGDWSGALRIFKEM-KCDVKPNSTTYINVISGFSTPEVLPEG 226

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I+    + + +++ ALI+MY KCG    A+EVFD +++ D+  WN MI    ++
Sbjct: 227 RKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLN 286

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  ++ K++M        TF+ +L ACS    + +GR    H+  R  +  ++  
Sbjct: 287 GDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILER-GLDSEVAV 345

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A+V++  + G +EEA  +  +M    D V W  L+ A
Sbjct: 346 ATALVNMYAKCGSLEEARKVFNAMK-NRDAVAWSTLIGA 383



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 109/214 (50%), Gaps = 6/214 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++VVSWN+MI  + +N    EAL  +  M    +  D  TF SV+  C+   +L     +
Sbjct: 73  RNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS---SLAQGREI 129

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           HN +    ++    L+ AL+ MY++ G +  AK +F ++Q  D + WNA+I   +  G  
Sbjct: 130 HNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDW 189

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
           + A  IF +M+  +V P+S T++ +++  S   ++ EGRK    + +       L    A
Sbjct: 190 SGALRIFKEMKC-DVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVAN-GFDTDLVVATA 247

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           ++++ G+ G   EA  +   M  + D+V W  ++
Sbjct: 248 LINMYGKCGSSHEAREVFDKMK-KRDMVSWNVMI 280



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 11/186 (5%)

Query: 38  EPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE 97
           +PD  TF +V+  C+  G +     +H  I   + E + ++  ALI MY KC  +  A+ 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 98  VFDTV---QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
           VF+++   QRN VS WNAMI+  A +G + +A  ++ +M +  +  D +TF+ +L ACS 
Sbjct: 64  VFESMDWRQRNVVS-WNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS 122

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVVW 213
              + +GR+   H R  YS     +    A+V +  R G + +A  +  S+    D   W
Sbjct: 123 ---LAQGREI--HNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTR-DETSW 176

Query: 214 RALLSA 219
            A++ A
Sbjct: 177 NAVILA 182


>gi|297720639|ref|NP_001172681.1| Os01g0884800 [Oryza sativa Japonica Group]
 gi|20161229|dbj|BAB90156.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|255673935|dbj|BAH91411.1| Os01g0884800 [Oryza sativa Japonica Group]
          Length = 517

 Score =  330 bits (846), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 168/414 (40%), Positives = 239/414 (57%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVV+W S++ G  R      A+R +R+M+++ V  D+F  A+V+  CA   AL   
Sbjct: 104 MPRRDVVTWTSLVTGLARAGSHGLAVRAYRDMVAAGVATDEFAVAAVLSSCAGSTALELG 163

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   +    E    +  +L+ MY+K G ++ A+ VFD ++      W A+I G A +
Sbjct: 164 RSVHAAAVRSGHEPFLSVGNSLVSMYAKTGSLRDARTVFDAMRSRCAITWTALIVGYAQN 223

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   ++ A++  M      PD +TF+GLL ACSH GL++ GR +F  M+S + I P  +H
Sbjct: 224 GRGRESLAVYADMARSGCRPDYVTFVGLLFACSHAGLLDAGRAHFQSMQSEHGISPGPDH 283

Query: 181 YGAMVDLLGRAGHIEEAYGLIT-SMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           Y  MVDLLGRAG + EA  L+  S   E D  VW+ALL+ACRT +   L E A   + RL
Sbjct: 284 YACMVDLLGRAGRLGEAVDLLDRSPAAELDATVWKALLAACRTHRNAALAERAAGMVWRL 343

Query: 240 MGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
              D   YV+LSN+Y   +RW     VR +M+ +G+ K  G SW+ +AGV H F AGDR 
Sbjct: 344 DPTDAMPYVMLSNLYSRARRWGDVARVRALMRSRGISKEPGCSWVVVAGVTHVFHAGDRD 403

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           H  A  I +    +  R ++ G +P TE  L D + E +E  L HH E+LA+A+G+L   
Sbjct: 404 HQRAAEIYRKAEEMAARIRARGHVPDTEWALQDEAPEGREMGLAHHGERLAVAFGLLAVP 463

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
               IR+ KNLR+C DCH+ IKM++ +  R II+RD   FH  + G CSCGDYW
Sbjct: 464 AAAPIRVYKNLRVCGDCHAAIKMVAEVYGREIILRDSNCFHHMKDGSCSCGDYW 517



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 100/218 (45%), Gaps = 11/218 (5%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K +V+ N+ I    R      AL  F EM +  +  D++T   ++   A L A   A   
Sbjct: 7   KGLVACNAAISRCSRAGLHRRALALFTEMRARGLRADEYTLPPILNSAALLRAPPAAALH 66

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA---IH 120
             L+       +  ++ AL+D Y+K  ++  A+ VFD + R DV  W ++++G+A    H
Sbjct: 67  ALLLRAGLAS-HLHVANALVDAYAKLSRLGAARAVFDEMPRRDVVTWTSLVTGLARAGSH 125

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLE 179
           GLA  A   +  M    V  D      +L++C+    +E GR  +   +RS +  +P L 
Sbjct: 126 GLAVRA---YRDMVAAGVATDEFAVAAVLSSCAGSTALELGRSVHAAAVRSGH--EPFLS 180

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              ++V +  + G + +A  +  +M      + W AL+
Sbjct: 181 VGNSLVSMYAKTGSLRDARTVFDAMRSRC-AITWTALI 217


>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 597

 Score =  330 bits (846), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 168/407 (41%), Positives = 255/407 (62%), Gaps = 5/407 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD+V+WN+ I   V+      AL +F +M +  V+ D FT  S++  C +LG+L+  
Sbjct: 170 MQVKDLVAWNAFIAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLDIG 229

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +++   +++IE N I+  A +DM+ KCG  + A+ +FD +++ +V  W+ MI G A++
Sbjct: 230 EEIYDRARKEEIECNIIVENARLDMHLKCGSTEAARVLFDDMKQRNVVSWSTMIVGYAMN 289

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM--RSRYSIQPQL 178
           G + +A A+FT M+   + P+ +TFLG+L+ACSH GLV EG++YF  M   +  +++P+ 
Sbjct: 290 GDSGEALALFTMMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVRLNDKNLEPRK 349

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVN 235
           EHY  MVDLLGR+G +EEAY  I  M +EPD  +W ALL AC   + + LG+     +V 
Sbjct: 350 EHYACMVDLLGRSGLLEEAYEFIKKMRVEPDTGIWGALLGACAVHRDMILGQKVADVLVE 409

Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
            +  +G  +VLLSN+Y    +WD  + VR  M+K G +K    S +E  G IH F  GD 
Sbjct: 410 TAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFDGKIHFFNRGDI 469

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SHP+++AI + L  ++++ ++ G++P T  V  DV  EEKE +L HHSEKLA+A+G++  
Sbjct: 470 SHPQSKAIYEKLDEILKKIRNMGYVPDTGSVFHDVEMEEKESSLSHHSEKLAIAFGLING 529

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGG 402
             G  IR+ KNLR C DCH + K +SRL  R II+RD+ RFH F  G
Sbjct: 530 RAGHPIRVMKNLRTCDDCHVFSKFVSRLTSREIIMRDKNRFHHFRNG 576



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 111/217 (51%), Gaps = 2/217 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP   +  WN++  G+VRN    E++  +++M    V PD+FT+  V+   ++LG L   
Sbjct: 69  MPKPRIFLWNTLFKGYVRNQLPFESVLLYKKMRDLGVRPDEFTYPFVVKAISQLGVLPCG 128

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++   E   I++  L+ MY K G++  A+ +F+++Q  D+  WNA I+     
Sbjct: 129 VSLHAHVLKNGFECLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFIAVCVQT 188

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G +A A   F KM    V  DS T + +L+AC   G ++ G + +D  R +  I+  +  
Sbjct: 189 GNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLDIGEEIYDRAR-KEEIECNIIV 247

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             A +D+  + G  E A  L   M  + +VV W  ++
Sbjct: 248 ENARLDMHLKCGSTEAARVLFDDMK-QRNVVSWSTMI 283



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 10/162 (6%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H ++I         L   L++     G +  A++VFD + +  + +WN +  G   + L
Sbjct: 30  IHAVVIRTGFSEKNSLLTQLLENLVLVGDMCYARQVFDEMPKPRIFLWNTLFKGYVRNQL 89

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             ++  ++ KM    V PD  T+  ++ A S  G++  G     H+     ++   E  G
Sbjct: 90  PFESVLLYKKMRDLGVRPDEFTYPFVVKAISQLGVLPCGVSLHAHV-----LKNGFECLG 144

Query: 183 ----AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
                +V +  + G +  A  L  SM ++ D+V W A ++ C
Sbjct: 145 IVATELVMMYMKFGELSSAEFLFESMQVK-DLVAWNAFIAVC 185


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  330 bits (846), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 165/411 (40%), Positives = 245/411 (59%), Gaps = 5/411 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K+ ++WN +I GF ++  ++EAL+ F +M  +  + + FTF S I   A L  +     +
Sbjct: 510 KEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQI 569

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAK-EVFDTVQRNDVSVWNAMISGVAIHGL 122
           H  +I+        +S ALI +Y KCG I+ AK + F+  +RN+VS WN +I+  + HG 
Sbjct: 570 HARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVS-WNTIITCCSQHGR 628

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F +M+   + P  +TF+G+LTACSH GLVEEG  YF  M + + I P+ +HY 
Sbjct: 629 GLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYA 688

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            +VD+LGRAG ++ A   +  M +  D +VWR LLSAC+  K LE+GE A  ++  L   
Sbjct: 689 CVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPH 748

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           D   YVLLSN Y    +W + + +R+IMK +GVRK  G+SW+E+  V+H F  GDR HP 
Sbjct: 749 DSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPL 808

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           A  I   L  L  R    G+      +  +  +E K+   + HSEKLA+A+G++      
Sbjct: 809 ADQIYNFLSHLNDRLYKIGYKQENYHLFHEKEKEGKDPTAFVHSEKLAVAFGLMSLPSCM 868

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            +R+ KNLR+C+DCH+W+K  S ++ R I++RD  RFH F  G CSCGDYW
Sbjct: 869 PLRVIKNLRVCNDCHTWMKFTSGVMGREIVLRDVYRFHHFNNGSCSCGDYW 919



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 117/226 (51%), Gaps = 4/226 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + +KDVVSW SMI G+V++    EAL  F+EM +  + PD    AS I  CA + A++  
Sbjct: 406 IEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQG 465

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +       +  +   L+ +Y++CG  + A   F+ ++  +   WN +ISG A  
Sbjct: 466 SQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQS 525

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
           GL  +A  +F KM+      +  TF+  ++A ++   +++G++     +++ Y+ + ++ 
Sbjct: 526 GLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEIS 585

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKR 225
           +  A++ L G+ G IE+A      MT   + V W  +++ C    R
Sbjct: 586 N--ALISLYGKCGSIEDAKMDFFEMTKRNE-VSWNTIITCCSQHGR 628



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 114/217 (52%), Gaps = 4/217 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D VSW +++ G+ +N   +EA+R +REM  S V P  +  +S++  C +         +
Sbjct: 106 RDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLI 165

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  + ++       +  ALI +Y +C   ++A  VF  +   D   +N +ISG A  G  
Sbjct: 166 HVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHG 225

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYG 182
             A  IF +M++  + PDS+T   LL ACS  G + +G++   + +++  S+   +E  G
Sbjct: 226 DRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIME--G 283

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +++DL  ++G IEEA  +  S     +VV+W  +L A
Sbjct: 284 SLLDLYVKSGDIEEALQIFDSGD-RTNVVLWNLMLVA 319



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 130/273 (47%), Gaps = 17/273 (6%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +VV WN M+  + +     ++   F  ML++ V P+KFT+  ++  C   G +     +H
Sbjct: 309 NVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIH 368

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
           +L I+   + +  +S  LIDMYSK G +  A+ + D ++  DV  W +MI+G   H    
Sbjct: 369 SLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCK 428

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR---SRYSIQPQLEHY 181
           +A   F +M+   + PD+I     ++AC+    V +G +   H R   S YS    +  +
Sbjct: 429 EALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQI--HARVYVSGYSADVSI--W 484

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL-- 239
             +V L  R G  +EA+    ++  + + + W  L+S    F +  L E A+    ++  
Sbjct: 485 NGLVYLYARCGISKEAFSSFEAIEHK-EGITWNGLISG---FAQSGLYEEALKVFMKMDQ 540

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGV 272
            G  Y    N++ ++     + N+ +I + K +
Sbjct: 541 AGAKY----NVFTFVSSISASANLADIKQGKQI 569



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/304 (21%), Positives = 122/304 (40%), Gaps = 44/304 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +   S+N  + GF+     ++ L  F       +      FA  +  C   G     
Sbjct: 1   MTPRGAASFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRGSGR---- 56

Query: 61  YW-----VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
            W     +H   I   +    I+   LID+Y+K G ++ A+ VF+ +   D   W A++S
Sbjct: 57  RWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLS 116

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---------KYFD 166
           G A +GL  +A  ++ +M    V+P       +L+AC+   L + GR          +F 
Sbjct: 117 GYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFS 176

Query: 167 -----------HMRSR-YSIQPQL---------EHYGAMVDLLGRAGHIEEAYGLITSMT 205
                      ++R R + +  ++           +  ++    + GH + A G+   M 
Sbjct: 177 ETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQ 236

Query: 206 ---MEPDVVVWRALLSACRTFKRLELG-EVAIVNISRLMGGDYVLLSNMY-CYLKRWDTA 260
              + PD V   +LL+AC     L  G ++    +   M  DY++  ++   Y+K  D  
Sbjct: 237 LSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIE 296

Query: 261 ENVR 264
           E ++
Sbjct: 297 EALQ 300



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  ++ VSWN++I    ++ R  EAL  F +M    ++P   TF  V+  C+ +G +   
Sbjct: 608 MTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEG 667

Query: 61  Y-WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             +  ++  E  I       A ++D+  + G++  AK   + +    D  VW  ++S   
Sbjct: 668 LCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACK 727

Query: 119 IH 120
           +H
Sbjct: 728 VH 729


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  330 bits (846), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 169/413 (40%), Positives = 242/413 (58%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPD  +V+WN+++ G  +   F+  L  +  M  +   PDK TF SVI  C+ L  L   
Sbjct: 262 MPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCSELAILCQG 321

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++        + ++L+ MYS+CG +Q + + F   +  DV +W++MI+    H
Sbjct: 322 KQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWSSMIAAYGFH 381

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +ME  N+  + ITFL LL ACSHCGL ++G   FD M  +Y ++ +L+H
Sbjct: 382 GQGEEAIKLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKKYGLKARLQH 441

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  +VDLLGR+G +EEA  +I SM ++ D ++W+ LLSAC+  K  E+       + R+ 
Sbjct: 442 YTCLVDLLGRSGCLEEAEAMIRSMPVKADAIIWKTLLSACKIHKNAEIARRVADEVLRID 501

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D   YVLL+N+Y    RW     VR  MK K V+K  G SW+E+   +HQF  GD  H
Sbjct: 502 PQDSASYVLLANIYSSANRWQNVSEVRRAMKDKMVKKEPGISWVEVKNQVHQFHMGDECH 561

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+   I++ L  L    K +G++P T  VL D+  EEKE  L HHSEKLA+A+ ++ T  
Sbjct: 562 PKHVEINQYLEELTSEIKRQGYVPDTSSVLHDMDNEEKEQILRHHSEKLAIAFALMNTPE 621

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH  IK IS + +  IIVRD  RFH F+ G CSCGDYW
Sbjct: 622 GVPIRVMKNLRVCSDCHVAIKYISEIKKLEIIVRDSSRFHHFKNGTCSCGDYW 674



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 154/320 (48%), Gaps = 25/320 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MPD++V +WN+M+ G  +    +EAL  F  M      PD+++  SV+ GCA LGAL   
Sbjct: 161 MPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNELSFMPDEYSLGSVLRGCAHLGALLAG 220

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +++   E N ++  +L  MY K G +   + V + +    +  WN ++SG A  
Sbjct: 221 QQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTLMSGKAQK 280

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLE 179
           G        +  M+M    PD ITF+ ++++CS   ++ +G++   H  + +     ++ 
Sbjct: 281 GYFEGVLDQYCMMKMAGFRPDKITFVSVISSCSELAILCQGKQI--HAEAVKAGASSEVS 338

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI-----V 234
              ++V +  R G ++++         E DVV+W ++++A   +     GE AI     +
Sbjct: 339 VVSSLVSMYSRCGCLQDSIKTFLECK-ERDVVLWSSMIAA---YGFHGQGEEAIKLFNEM 394

Query: 235 NISRLMGGDYVLLSNMY----CYLKRWDTAENVREIMKKKGVRKSQGKSWLEL------A 284
               L G +   LS +Y    C LK  D    + ++M KK   K++ + +  L      +
Sbjct: 395 EQENLPGNEITFLSLLYACSHCGLK--DKGLGLFDMMVKKYGLKARLQHYTCLVDLLGRS 452

Query: 285 GVIHQFKAGDRSHP-EAQAI 303
           G + + +A  RS P +A AI
Sbjct: 453 GCLEEAEAMIRSMPVKADAI 472



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/247 (20%), Positives = 105/247 (42%), Gaps = 49/247 (19%)

Query: 18  RNARFDEALRFFREMLS------------SKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           +N RF +    F  + S            S++  +   F++++  C  L +++    +H+
Sbjct: 34  QNGRFSDGNEQFATLCSKGHIREAFESFLSEIWAEPRLFSNLLQACIPLKSVSLGKQLHS 93

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMA------------------------------ 95
           LI       +  +S  L+++YSK G++Q A                              
Sbjct: 94  LIFTSGCSSDKFISNHLLNLYSKFGELQAAVALFDRMPRRNIMSCNIMIKAYLGMGNLES 153

Query: 96  -KEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
            K +FD +   +V+ WNAM++G+    +  +A  +F++M   + +PD  +   +L  C+H
Sbjct: 154 AKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNELSFMPDEYSLGSVLRGCAH 213

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD--VVV 212
            G +  G++   ++  +   +  L    ++  +  +AG + +   +I  M   PD  +V 
Sbjct: 214 LGALLAGQQVHAYVM-KCGFECNLVVGCSLAHMYMKAGSMHDGERVINWM---PDCSLVA 269

Query: 213 WRALLSA 219
           W  L+S 
Sbjct: 270 WNTLMSG 276


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  330 bits (846), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 162/408 (39%), Positives = 253/408 (62%), Gaps = 5/408 (1%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           V+W S + G V+N R + A+  FREM+   + P+ FT +S++  C+ L  L     +H +
Sbjct: 270 VTWTSFVVGLVQNGREEVAVSIFREMIRCSISPNPFTLSSILQACSSLAMLEVGEQIHAI 329

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
            ++  ++ N    AALI++Y KCG +  A+ VFD +   DV   N+MI   A +G   +A
Sbjct: 330 TMKLGLDGNKYAGAALINLYGKCGNMDKARSVFDVLTELDVVAINSMIYAYAQNGFGHEA 389

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186
             +F +++   ++P+ +TF+ +L AC++ GLVEEG + F  +R+ ++I+  ++H+  M+D
Sbjct: 390 LELFERLKNMGLVPNGVTFISILLACNNAGLVEEGCQIFASIRNNHNIELTIDHFTCMID 449

Query: 187 LLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM---GGD 243
           LLGR+  +EEA  LI  +   PDVV+WR LL++C+    +E+ E  +  I  L    GG 
Sbjct: 450 LLGRSRRLEEAAMLIEEVR-NPDVVLWRTLLNSCKIHGEVEMAEKVMSKILELAPGDGGT 508

Query: 244 YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAI 303
           ++LL+N+Y    +W+    ++  ++   ++KS   SW+++   +H F AGD SHP +  I
Sbjct: 509 HILLTNLYASAGKWNQVIEMKSTIRDLKLKKSPAMSWVDVDREVHTFMAGDLSHPRSLEI 568

Query: 304 DKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT-SPGTEIR 362
            ++L  L+++ K+ G+ P T  VL D+ EE+K  +LY+HSEKLA+AY + KT    T IR
Sbjct: 569 FEMLHGLMKKVKTLGYNPNTRFVLQDLDEEKKISSLYYHSEKLAIAYALWKTIGRTTTIR 628

Query: 363 ISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           I KNLR+C DCHSWIK +S L  R II RD  RFH F+GGLCSC DYW
Sbjct: 629 IFKNLRVCGDCHSWIKFVSLLTGRDIIARDSKRFHHFKGGLCSCKDYW 676



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 159/364 (43%), Gaps = 64/364 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P + +V+WNSMI   + + +  EA+ F+  ML   V PD +TF+++    ++LG + H 
Sbjct: 61  LPSRHIVTWNSMISSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHG 120

Query: 61  YWVHNLIIEKKIE-LNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              H L +   +E L+  +++AL+DMY+K  K++ A  VF  V   DV ++ A+I G A 
Sbjct: 121 QRAHGLAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQ 180

Query: 120 HGLAADASAIFTKMEMFNVLPDSITF---------LG----------------------- 147
           HGL  +A  IF  M    V P+  T          LG                       
Sbjct: 181 HGLDGEALKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVAS 240

Query: 148 ---LLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
              LLT  S C ++E+  K F+ +   Y+ Q     + + V  L + G  E A  +   M
Sbjct: 241 QTSLLTMYSRCNMIEDSIKVFNQL--DYANQVT---WTSFVVGLVQNGREEVAVSIFREM 295

Query: 205 ---TMEPDVVVWRALLSACRTFKRLELGEV--AIVNISRLMGGDY--VLLSNMYCYLKRW 257
              ++ P+     ++L AC +   LE+GE   AI     L G  Y    L N+Y      
Sbjct: 296 IRCSISPNPFTLSSILQACSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNM 355

Query: 258 DTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSE 317
           D A +V +++ +  V        + +  +I+ +      H   +        L +R K+ 
Sbjct: 356 DKARSVFDVLTELDV--------VAINSMIYAYAQNGFGHEALE--------LFERLKNM 399

Query: 318 GFLP 321
           G +P
Sbjct: 400 GLVP 403



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 6/176 (3%)

Query: 44  FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           ++S+I   A   +L     VH  +I+     +F L   LID Y KCG +  A+++FD + 
Sbjct: 4   YSSLIAQSAHTKSLTTLRAVHTNVIKSGFSYSF-LGHKLIDGYIKCGSLAEARKLFDELP 62

Query: 104 RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
              +  WN+MIS    HG + +A   +  M M  VLPD+ TF  +  A S  GL+  G++
Sbjct: 63  SRHIVTWNSMISSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHGQR 122

Query: 164 YFDHMRSRYSIQPQLEHY--GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              H  +       L+ +   A+VD+  +   + +A+ L+    +E DVV++ AL+
Sbjct: 123 --AHGLAVVLGLEVLDGFVASALVDMYAKFDKMRDAH-LVFRRVLEKDVVLFTALI 175



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + + DVV+ NSMI  + +N    EAL  F  + +  + P+  TF S++  C   G +   
Sbjct: 365 LTELDVVAINSMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNNAGLVEEG 424

Query: 61  YWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             +   I     IEL       +ID+  +  +++ A  + + V+  DV +W  +++   I
Sbjct: 425 CQIFASIRNNHNIELTIDHFTCMIDLLGRSRRLEEAAMLIEEVRNPDVVLWRTLLNSCKI 484

Query: 120 HGLAADASAIFTKM 133
           HG    A  + +K+
Sbjct: 485 HGEVEMAEKVMSKI 498


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 167/413 (40%), Positives = 247/413 (59%), Gaps = 5/413 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K+VV+W+++   + RN R  +A+R    M    + P+  TF SV+  CA + AL     
Sbjct: 240 EKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRR 299

Query: 63  VHNLI--IEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           +H  I  +   +E +  +  AL++MYSKCG + +A  +FD +   D+ +WN++I+  A H
Sbjct: 300 IHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQH 359

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +M +  + P  ITF  +L ACSH G++++GRK+F      + I P+ EH
Sbjct: 360 GQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEH 419

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           +G MVDLLGRAG I ++  L+  M  EP  V W A L ACRT++ ++    A  N+ +L 
Sbjct: 420 FGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQLD 479

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 YVLLSNMY    RW     +R+ M+     K  G+SW+E+   +H+F +GD  H
Sbjct: 480 PRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDH 539

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    I   L  L +  K+ G++P TE+VL DV +E KE  + +HSEKLA+A+ +L T  
Sbjct: 540 PRIGEIHAELQRLTKLMKAAGYVPDTEMVLHDVKQEVKETMVGYHSEKLAMAFALLTTPE 599

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G+ IR+ KNLR+C+DCH+  K IS+L+ R I+VRD  RFHRF+ G CSCGDYW
Sbjct: 600 GSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 652



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 124/235 (52%), Gaps = 6/235 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVV+W++M+  + RN    EAL  FR+M    V P+K T  S +  CA LG L   
Sbjct: 137 MSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSG 196

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +  + I+   ++  AL+++Y KCG+I+ A E F  +   +V  W+A+ +  A +
Sbjct: 197 ALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYARN 256

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLE 179
               DA  +  +M++  + P+S TF+ +L AC+    +++GR+  + +      ++  + 
Sbjct: 257 DRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVY 316

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA----CRTFKRLELGE 230
              A+V++  + G++  A  +   +    D+V+W +L++      +T K LEL E
Sbjct: 317 VLTALVNMYSKCGNLALAGNMFDKIA-HLDLVLWNSLIATNAQHGQTEKALELFE 370



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 104/219 (47%), Gaps = 8/219 (3%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K+V SW  M+  F  N  FD    FFR ML   + P +   +  +  C     +     +
Sbjct: 39  KNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQGINPGEVGISIFLSACTDAREITIGRSI 98

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
              I+   IE   I+  AL+ +Y K G    A  VF  +   DV  W+AM++  A +G  
Sbjct: 99  QLAILGTGIEEESIVQTALVSLYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHP 158

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F +M++  V P+ +T +  L AC+  G +  G      + ++  IQ  +    A
Sbjct: 159 REALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQ-GIQSGVVVGTA 217

Query: 184 MVDLLGRAGHIE---EAYGLITSMTMEPDVVVWRALLSA 219
           +V+L G+ G IE   EA+G I    +E +VV W A+ +A
Sbjct: 218 LVNLYGKCGRIEAAAEAFGQI----VEKNVVAWSAISAA 252



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 30/188 (15%)

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           N  L   LID+Y+KC +   A  VF  +Q  +V  W  M++  A +         F  M 
Sbjct: 9   NRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGML 68

Query: 135 MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG---------AMV 185
           +  + P  +     L+AC+    +  GR          SIQ  +   G         A+V
Sbjct: 69  LQGINPGEVGISIFLSACTDAREITIGR----------SIQLAILGTGIEEESIVQTALV 118

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS----------ACRTFKRLELGEVAIVN 235
            L G+ GH  +A  +   M+   DVV W A+++          A   F++++L  VA   
Sbjct: 119 SLYGKLGHCTDAASVFLRMS-HRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNK 177

Query: 236 ISRLMGGD 243
           ++ + G D
Sbjct: 178 VTLVSGLD 185


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 173/412 (41%), Positives = 251/412 (60%), Gaps = 4/412 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNHAY 61
           D D V WN+MI  + ++ R  +AL  +R M  ++ + P + TF +VI  CA L AL    
Sbjct: 200 DADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGR 259

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H  +     + N ++S AL+ MY KCG +  A +VF +++  D   WN +IS  A HG
Sbjct: 260 AIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHG 319

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
            +  A  ++ +M++  V P  +TF+GLL+ACSH GLV +G  YF  M+  + I+P + H+
Sbjct: 320 HSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHF 379

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISR 238
           G ++DLLGR G + EA  ++ SM ++ + V W +LL AC+T   L+ G  A   +V+   
Sbjct: 380 GCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVP 439

Query: 239 LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
              G YVLLSN+Y    RW   E +R+IM  +GV+KS GKSW+E+  V+H+F +GDRSHP
Sbjct: 440 WTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDRSHP 499

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           + + I   LG +++  K  G++P T  V  D+ EEEKE  L  HSEKLA+ YG +     
Sbjct: 500 QGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKEDLLVCHSEKLAIVYGNMVVPGK 559

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + +RI KNLR+C DCH+  K +SR+  R I+VRD  RFH FE G CSC DYW
Sbjct: 560 SMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFHLFENGSCSCRDYW 611



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 123/222 (55%), Gaps = 8/222 (3%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREML--SSKVEPDKFTFASVIYGCARLGALNHAY 61
           K+ V+WN+M+  +  + R  EAL  FREM   S    PDKF+F+  I  C+ L  L    
Sbjct: 95  KNSVTWNAMMTNYKLDGRDREALELFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGR 154

Query: 62  WVHNLIIEKKIEL--NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV-WNAMISGVA 118
            +H ++  +  EL  + ++  AL++MYSKCG ++ A++VFD+++ +  SV WNAMI+  A
Sbjct: 155 EIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYA 214

Query: 119 IHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
            HG    A  ++  M +  ++ P   TF+ ++  C+    +++GR     +R+  +    
Sbjct: 215 QHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRAT-NFDAN 273

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           L    A+V + G+ G ++EA  +  SM ++ D + W  ++S+
Sbjct: 274 LLVSNALVHMYGKCGCLDEALDVFHSMKLK-DEISWNTIISS 314



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 107/212 (50%), Gaps = 5/212 (2%)

Query: 13  IGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA--LNHAYWVHNLIIEK 70
           +  F  N    EAL FFR M  S   PD+ TF+ ++   A++GA  ++    +H      
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 71  KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIF 130
            +  N ++  A+I MY KCG++  A+  F+ +Q  +   WNAM++   + G   +A  +F
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120

Query: 131 TKM--EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR-YSIQPQLEHYGAMVDL 187
            +M     +  PD  +F   + ACS+   +E+GR+  + +R     +   +    A++++
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNM 180

Query: 188 LGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             + G +EEA  +  S+  + D V W A+++A
Sbjct: 181 YSKCGDLEEARKVFDSIRHDADSVCWNAMIAA 212


>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 572

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 160/414 (38%), Positives = 260/414 (62%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLGALNH 59
           M +K V SW+++IG       ++E L    +M S  +   ++ T  +V+  C  LG+ + 
Sbjct: 159 MDEKSVASWSAIIGAHACVEMWNECLMLLGKMSSEGRCRVEESTLVNVLSACTHLGSPDL 218

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H +++    ELN ++  +LIDMY K G ++    VF  +   +   +  MISG+AI
Sbjct: 219 GKCIHGILLRNISELNVVVKTSLIDMYVKSGCLEKGLRVFKNMSEKNRYSYTVMISGLAI 278

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +A  +F++M    + PD + ++G+ +ACSH GLVEEG + F  M+  + I+P ++
Sbjct: 279 HGRGKEALKVFSEMIEEGLAPDDVVYVGVFSACSHAGLVEEGLQCFKSMQFEHKIEPTVQ 338

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HYG MVDLLGR G ++EAY LI SM+++P+ V+WR+LLSAC+    LE+G++A  N+  L
Sbjct: 339 HYGCMVDLLGRFGMLKEAYELIKSMSIKPNDVIWRSLLSACKVHHNLEIGKIAAENLFML 398

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                GDY++L+NMY   ++WD    +R  + ++ + ++ G S +E    +++F + D+S
Sbjct: 399 NQNNSGDYLVLANMYAKAQKWDDVAKIRTKLAERNLVQTPGFSLIEAKRKVYKFVSQDKS 458

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
            P+   I +++  +  + K EG++P T  VL+DV +EEK+  L  HS+KLA+A+G++ TS
Sbjct: 459 IPQWNIIYEMIHQMEWQLKFEGYIPDTSQVLLDVDDEEKKERLKFHSQKLAIAFGLIHTS 518

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G+ +RI++NLR+C DCH++ K IS +  R I VRDR+RFH F+ G CSC DYW
Sbjct: 519 EGSPLRITRNLRMCSDCHTYTKYISMIYEREITVRDRLRFHHFKNGSCSCKDYW 572



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 121/262 (46%), Gaps = 48/262 (18%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           +N+MI G V + + +EAL  + +M+   VEPDKFT+  V+  C+ LG ++    VH  + 
Sbjct: 66  YNTMIRGNVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVF 125

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
           +  +E + I+  +LI+MY KCG+I+ A +VF+ +    V+ W+A+I   A   +  +   
Sbjct: 126 KMGLEGDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLM 185

Query: 129 IFTKMEMFN-VLPDSITFLGLLTACSH--------------------------------- 154
           +  KM        +  T + +L+AC+H                                 
Sbjct: 186 LLGKMSSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMY 245

Query: 155 --CGLVEEGRKYFDHM--RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME--- 207
              G +E+G + F +M  ++RYS       Y  M+  L   G  +EA  + + M  E   
Sbjct: 246 VKSGCLEKGLRVFKNMSEKNRYS-------YTVMISGLAIHGRGKEALKVFSEMIEEGLA 298

Query: 208 PDVVVWRALLSACRTFKRLELG 229
           PD VV+  + SAC     +E G
Sbjct: 299 PDDVVYVGVFSACSHAGLVEEG 320



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 6/145 (4%)

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           N + + AL    +K G +  A  +F  +       +N MI G        +A  ++  M 
Sbjct: 35  NLVATCAL----TKWGSMDYACSIFTQIDEPSSFDYNTMIRGNVNDMKLEEALLLYVDMI 90

Query: 135 MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194
              V PD  T+  +L ACS  G+V+EG +   H+  +  ++  +    +++++ G+ G I
Sbjct: 91  ERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHV-FKMGLEGDVIVQNSLINMYGKCGEI 149

Query: 195 EEAYGLITSMTMEPDVVVWRALLSA 219
           + A  +   M  E  V  W A++ A
Sbjct: 150 KNACDVFNGMD-EKSVASWSAIIGA 173


>gi|218188763|gb|EEC71190.1| hypothetical protein OsI_03082 [Oryza sativa Indica Group]
          Length = 486

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 167/413 (40%), Positives = 242/413 (58%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++VVSW+++I G+        A+  FR  L   V  + FT + ++  CA        
Sbjct: 75  MPERNVVSWSALICGYADAGMHSAAMEIFRLALEEAVPVNDFTVSCILRVCAAATLFELG 134

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   I+  +  +  + ++L+ +YSKCG ++ A +VF      ++ +WNA ++  A H
Sbjct: 135 AQVHARSIKTALNASPFVGSSLVSLYSKCGLVECAYQVFGEAPERNLGIWNAGLNASAQH 194

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A   F  M+     P+SITFL L+TACSH GLV+EG++YF  M+  Y I+PQ EH
Sbjct: 195 GHTTAAFQRFMDMQNAGFRPNSITFLSLITACSHAGLVDEGKRYFSLMK-EYRIEPQAEH 253

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y AMVDLLGR G I EA GLI SM MEP   VW ALL ACR FK  +   +A   +    
Sbjct: 254 YAAMVDLLGRVGRISEALGLIESMPMEPPEYVWGALLMACRMFKDADAAAIAAKRLFETG 313

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G ++LLS+ Y    R   A   R+ M+  GVRK  G SWLE AG +H F +  R H
Sbjct: 314 SRSSGAHMLLSSTYAAAGRHMDAALARKAMRDAGVRKETGLSWLEAAGEVHTFVSNCRRH 373

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P +  I  +L  + ++ ++ G++  T  V+ DV ++EK+  + +HSE+LA+  G+L    
Sbjct: 374 PRSNEIYNVLEKVGEKMEAAGYVADTSAVVKDVDKDEKQATMRYHSERLAIGLGLLIVPE 433

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH+ +K +S+   R++I+RD  RFHRFE G+CSCGD+W
Sbjct: 434 GVPIRVMKNLRVCDDCHNAVKYLSKCTGRIVILRDNRRFHRFEDGVCSCGDFW 486



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 81/161 (50%), Gaps = 6/161 (3%)

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           + +H L  +     +  + ++++DMY+KCG +  A+ +FD +   +V  W+A+I G A  
Sbjct: 34  HALHGLSAKTPFAGDVFVGSSVLDMYAKCGHLADARRLFDEMPERNVVSWSALICGYADA 93

Query: 121 GLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQL 178
           G+ + A  IF ++ +   +P +  T   +L  C+   L E G +   H RS + ++    
Sbjct: 94  GMHSAAMEIF-RLALEEAVPVNDFTVSCILRVCAAATLFELGAQV--HARSIKTALNASP 150

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               ++V L  + G +E AY +      E ++ +W A L+A
Sbjct: 151 FVGSSLVSLYSKCGLVECAYQVFGEAP-ERNLGIWNAGLNA 190


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 168/417 (40%), Positives = 258/417 (61%), Gaps = 7/417 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KD+V+W +M+ GF +NA+  EAL +F  M  S +  D+ T A  I  CA+LGA  +A
Sbjct: 242 LPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYA 301

Query: 61  YWVHNLIIEKKIELN--FILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
                +  +     +   ++ +ALIDMYSKCG ++ A  VF ++   +V  +++MI G+A
Sbjct: 302 DRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLA 361

Query: 119 IHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
            HG A +A  +F  M     + P+++TF+G LTACSH GLV++GR+ F  M   + ++P 
Sbjct: 362 THGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPT 421

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
            +HY  MVDLLGRAG ++EA  LI +M++EP   VW ALL ACR     ++ E+A  ++ 
Sbjct: 422 RDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHLF 481

Query: 238 RL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWL-ELAGVIHQFKAG 293
            L   + G+Y+LLSN+Y     W    +VR+++K+KG++K+   SW+ +  G +H+F  G
Sbjct: 482 ELEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPG 541

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           + +HP ++ I   L  L++R  + G+ P    V  DVS+  K   L  H+EKLALA+ +L
Sbjct: 542 NLNHPMSKKIQDKLEELVERLTALGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLL 601

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T+    I+I KNLR+C DCH ++++ S +  RVII+RD +RFH F  G CSCGD+W
Sbjct: 602 TTNRDYTIKIMKNLRMCQDCHMFMRLASEVTGRVIIMRDNMRFHHFRSGACSCGDFW 658



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 98/233 (42%), Gaps = 40/233 (17%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           W ++I G+    +FDEA+  +  M   ++ P  FTF++++  C  +G LN     H    
Sbjct: 118 WTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQTF 177

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDV--------------------- 107
             +      +   +IDMY KCG I  A++VFD +   DV                     
Sbjct: 178 RLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAAD 237

Query: 108 ----------SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL 157
                       W AM++G A +    +A   F +ME   +  D +T  G ++AC+  G 
Sbjct: 238 LFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLG- 296

Query: 158 VEEGRKYFDH-----MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
                KY D       +S YS    +    A++D+  + G++EEA  +  SM 
Sbjct: 297 ---ASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMN 346



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 116/279 (41%), Gaps = 28/279 (10%)

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQM---AKEVFDTVQRNDVSVWNAM 113
           LN    +H  ++ K ++ +  +   LI   +K G + M    + V + VQ  +  +W A+
Sbjct: 63  LNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLG-VPMDPYPRRVIEPVQFRNPFLWTAV 121

Query: 114 ISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
           I G  I G   +A A++  M    + P S TF  LL AC   G +  GR++  H ++ + 
Sbjct: 122 IRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQF--HAQT-FR 178

Query: 174 IQPQLEHY--GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV 231
           ++     Y    M+D+  + G I  A  +   M  E DV+ W  L++A   + R+   E 
Sbjct: 179 LRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMP-ERDVISWTELIAA---YARVGNMES 234

Query: 232 AIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREI---MKKKGVRKSQGKSWLELAGVIH 288
           A      L   D V  + M     +    +   E    M+K G+R  +    + +AG I 
Sbjct: 235 AADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADE----VTVAGYI- 289

Query: 289 QFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVL 327
                  S        K     +Q  +  G+ P+  +V+
Sbjct: 290 -------SACAQLGASKYADRAVQIAQKSGYSPSDHVVI 321


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 167/414 (40%), Positives = 252/414 (60%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKV-EPDKFTFASVIYGCARLGALNH 59
           M ++ V SW+++I        + + LR   +M +      ++    SV+  C  LGAL+ 
Sbjct: 192 MNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDL 251

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              VH  ++     LN I+  +LI+MY KCG +     +F  + + +   ++ MISG+A+
Sbjct: 252 GRSVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAM 311

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +   IFT+M    + PD I ++G+L ACSH GLV+EG + F+ M+  + I+P ++
Sbjct: 312 HGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQ 371

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HYG MVDL+GRAG I+EA  LI SM MEP+ V+WR+LLSA +    L+ GE+A   + +L
Sbjct: 372 HYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKL 431

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                 DYV+LSNMY   +RW+     R  M  KG+ +  G S +E+   +H+F + D  
Sbjct: 432 DSQKASDYVVLSNMYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAG 491

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+++++ ++L  +  + K EG+ P T  VL DV EEEK+  L  HS+KLA+AY ++ TS
Sbjct: 492 HPQSESVYEMLYQMEWQLKFEGYSPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTS 551

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G+ IRI +NLR+C+DCH++ K+IS +  R I VRDR RFH F+ G CSC DYW
Sbjct: 552 QGSPIRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 605



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 118/247 (47%), Gaps = 36/247 (14%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           +N+M+ G V++   +EAL  ++EM    V+PD FT+ +++  CARL A+     VH  I+
Sbjct: 99  FNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHIL 158

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
           +  +E +  +  +LI MY KCG+I +   VF+ +    V+ W+A+I+  A  G+ +D   
Sbjct: 159 KLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLR 218

Query: 129 IFTKM--EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS----------IQP 176
           +   M  E +    +SI  + +L+AC+H G ++ GR     +    S          I+ 
Sbjct: 219 LLGDMSNEGYWRAEESI-LVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEM 277

Query: 177 QLE--------------------HYGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVW 213
            L+                     Y  M+  L   G+  E   + T M    +EPD +V+
Sbjct: 278 YLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVY 337

Query: 214 RALLSAC 220
             +L+AC
Sbjct: 338 VGVLNAC 344



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 6/145 (4%)

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           N + + AL D     G +  A  +F  +       +N M+ G        +A   + +M 
Sbjct: 68  NLVATCALSDW----GSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTEEALITYKEMA 123

Query: 135 MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194
              V PD+ T+  LL AC+    VEEG +   H+  +  ++  +    +++ + G+ G I
Sbjct: 124 ERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHIL-KLGLENDVFVQNSLISMYGKCGEI 182

Query: 195 EEAYGLITSMTMEPDVVVWRALLSA 219
                +   M  E  V  W AL++A
Sbjct: 183 GVCCAVFEQMN-ERSVASWSALITA 206


>gi|242053821|ref|XP_002456056.1| hypothetical protein SORBIDRAFT_03g029620 [Sorghum bicolor]
 gi|241928031|gb|EES01176.1| hypothetical protein SORBIDRAFT_03g029620 [Sorghum bicolor]
          Length = 592

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 167/413 (40%), Positives = 244/413 (59%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++VVSW+++I G+        A+  FR  L   V  + FT +S+I  CA        
Sbjct: 181 MPERNVVSWSALICGYADAGMHPAAMGIFRLALEEAVPVNDFTVSSIIRVCAAATLFELG 240

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH    +  ++ +  + ++L+ +YSKCG ++ A  VF+     ++ +WNA++   A H
Sbjct: 241 AQVHARATKTALDASPFVGSSLVSVYSKCGLVECAYRVFNEAPEKNLGIWNAVLIASAQH 300

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G  A A   F +M+     P+ ITFL L+TACSH GLV+EG++YF  M+  Y I+PQ EH
Sbjct: 301 GHTAAAFERFMEMQNAGFRPNHITFLCLVTACSHAGLVDEGKRYFSLMKD-YGIEPQAEH 359

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y +MVDLLGR G I+EA  LI SM MEP   VW ALL +CR FK  +  E+A   +    
Sbjct: 360 YASMVDLLGRVGRIKEALDLIESMPMEPPESVWGALLMSCRIFKDADTAEIAAKRLFETG 419

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G ++LLS+ Y    R   A   R+ M+  GVRK  G SWLE AG +H F +  R H
Sbjct: 420 SRSSGAHMLLSSTYAAAGRHIDAALARKAMRDAGVRKETGLSWLEAAGEVHTFVSNCRRH 479

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
             ++ I K+L  + ++ ++ G++  T  V+ DV  +EK   + +HSE+LA+  G+L    
Sbjct: 480 QRSEEIYKVLEKVGEKMEAAGYVADTSAVVKDVDGDEKRATVRYHSERLAIGLGLLIVPQ 539

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCHS IK +++   RV+++RD  RFHRFE G+CSCGD+W
Sbjct: 540 GVPIRVMKNLRVCDDCHSAIKYLTKCTGRVVVLRDNRRFHRFEDGVCSCGDFW 592



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 14/221 (6%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVE------PDKFTFASVIYGCARLGALNHA 60
            +W+S+I  F +N     A   FR ML++ V       P      +     +R     HA
Sbjct: 82  AAWSSLISSFAQNGLAAAAFDTFRRMLAAGVPATDRNIPSAAKAVAAAETLSRPPFAPHA 141

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L  +     +  + +A++DMY+KCG +  A+ +FD +   +V  W+A+I G A  
Sbjct: 142 --LHGLAAKTPFAGDVFVGSAILDMYAKCGHLADARRLFDEMPERNVVSWSALICGYADA 199

Query: 121 GLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           G+   A  IF ++ +   +P +  T   ++  C+   L E G +   H R+  +      
Sbjct: 200 GMHPAAMGIF-RLALEEAVPVNDFTVSSIIRVCAAATLFELGAQV--HARATKTALDASP 256

Query: 180 HYG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             G ++V +  + G +E AY +      E ++ +W A+L A
Sbjct: 257 FVGSSLVSVYSKCGLVECAYRVFNEAP-EKNLGIWNAVLIA 296


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 175/427 (40%), Positives = 249/427 (58%), Gaps = 17/427 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D  SWN+M+ G+ RNA+F++ L  F ++L      D  + + ++  C RL +L   
Sbjct: 495 MKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSILLTSCGRLVSLQLG 554

Query: 61  YWVHNLIIE-------KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAM 113
              H ++ +          +    ++ ALI MYSKCG I+ A +VF  ++R DV  W AM
Sbjct: 555 KQFHAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKMERKDVFSWTAM 614

Query: 114 ISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
           I+G A HGLA +A  +F +M+   + P+ +TFL LL AC+H GLV+EG  YFD M + Y 
Sbjct: 615 ITGCAHHGLAVEALQLFERMKTDGIKPNQVTFLALLMACAHGGLVQEGSYYFDSMYNDYG 674

Query: 174 IQPQLEHYGAMVDLLGRAGHIEEA-----YGLITSMTMEPDVV-VWRALLSACRTFKRLE 227
           + P +EHY  M+DL GR+G  + A     +G+        D++ +W+ LL AC   K+L+
Sbjct: 675 LSPSIEHYACMIDLFGRSGQFDRAKSLVEFGITLFKPYHDDILNLWKVLLGACHASKQLD 734

Query: 228 LGEVAIVNISRLMGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELA 284
           LG  A   I  L   D   Y+LL+N+Y     W+ A  VR+ M+ KG+RK  G SW++  
Sbjct: 735 LGVEAATKILELEPEDEATYILLANLYASSGLWEDAIKVRKAMRDKGLRKEVGCSWIDTG 794

Query: 285 GVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSE 344
              H F AGD  HP+ + I + L  L    +  G++P TELVL DV E EKE  L  HSE
Sbjct: 795 NRRHVFVAGDVYHPQRKEIYEKLAQLNYSCRRMGYVPMTELVLHDVDETEKEAILGCHSE 854

Query: 345 KLALAYGILKTSPGTE-IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGL 403
           KLA+++G+L    G   IR+ KNLR+C DCHSW+K  S L +R I++RD  RFH F  G 
Sbjct: 855 KLAVSFGLLNCGVGNGVIRVMKNLRVCEDCHSWMKFASLLEKREILLRDSQRFHLFRDGS 914

Query: 404 CSCGDYW 410
           CSCGDYW
Sbjct: 915 CSCGDYW 921



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 113/222 (50%), Gaps = 6/222 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
            P++DV+SW+++I  + R   F +A   F++M+   ++P+ F+ AS++      G +   
Sbjct: 81  FPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCSTGEIGLC 140

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD--TVQRNDVSVWNAMISGVA 118
             +H   I     L+  + AA I MYS+CG ++ A+ VFD  ++   D+ +WN++I+   
Sbjct: 141 RQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYI 200

Query: 119 IHGLAADASAIFTKMEMFNVL-PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
            HG   +   +F KM    V+ P  +T+  ++ AC   G  EE      H R   +    
Sbjct: 201 FHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSG--EEKYGAMVHGRIIKAGLEA 258

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              + ++V   G+ G+++ A  L   ++   DVV W A+++A
Sbjct: 259 TNLWNSLVTFYGKCGNLQHASQLFERIS-RKDVVSWNAMIAA 299



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 6/218 (2%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYWV 63
           D++ WNS+I  ++ +  + E LR F +M+S   V P + T+ASV+  C   G   +   V
Sbjct: 188 DILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMV 247

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  II+  +E   + ++ L+  Y KCG +Q A ++F+ + R DV  WNAMI+     G  
Sbjct: 248 HGRIIKAGLEATNLWNS-LVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEG 306

Query: 124 ADASAIFTKMEMFN--VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
            +A  +F +M      V P+ +TFL LL+A S    +  GR+   H+  R S++      
Sbjct: 307 ENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHI-FRLSLEVDTSIT 365

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            +++    +   + +A  +   + +  D++ W ++L+ 
Sbjct: 366 NSLITFYSKCREVGKAREIFERLLLR-DIISWNSMLAG 402



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 107/223 (47%), Gaps = 12/223 (5%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLS--SKVEPDKFTFASVIYGCARLGALNHAY 61
           KDVVSWN+MI    +    + AL  FR ML     V+P++ TF S++   + L AL    
Sbjct: 288 KDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGR 347

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H  I    +E++  ++ +LI  YSKC ++  A+E+F+ +   D+  WN+M++G   + 
Sbjct: 348 EIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNE 407

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSH--CGLV--EEGRKYFDHMRSRYSIQP- 176
                  IF +M +  + PDS +   +  A S    GL+    G++   ++  R  I P 
Sbjct: 408 QQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRR--ITPG 465

Query: 177 --QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              L    A++ +  +   I +A  +   M    D   W A++
Sbjct: 466 GVSLSVSNAILKMYAKFNRIADAEKIFKGMK-NRDSYSWNAMM 507



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 78/171 (45%), Gaps = 15/171 (8%)

Query: 62  WVHNLIIEKKIEL-NFILSAALIDMYSKCGK----------IQMAKEVFDTVQRNDVSVW 110
           ++H+ +  K++E  N   S+  I   S C K          ++ A+++FD     DV  W
Sbjct: 30  FLHSHLRNKQLEFQNHGFSSQFIFRCSACSKFLVSQSEHERLKCAQQLFDNFPNRDVISW 89

Query: 111 NAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD-HMR 169
           +A+I+  +  G  A A  +F KM    + P+  +   LL      G +   R+     +R
Sbjct: 90  SALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCSTGEIGLCRQLHGWSIR 149

Query: 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP-DVVVWRALLSA 219
           + + +   +    A + +  R G +E+A  +    ++   D+++W ++++A
Sbjct: 150 TGFGLDSGIR--AAWITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAA 198


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 169/397 (42%), Positives = 241/397 (60%), Gaps = 3/397 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K ++SWN+M+  +  N    EA+  F  M    +EPD  T A+V+  C  + AL+    +
Sbjct: 255 KGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRI 314

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H +I  +++  + +L  AL+DMY+ CG ++ A++VFD++   DV  W ++IS    HG  
Sbjct: 315 HEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHG 374

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F KM    + PDSI F+ +L ACSH GL++ G+ YF  M S + I P+LEHY  
Sbjct: 375 REAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYAC 434

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---M 240
           MVDLLGRAG I EAY  I  M ++P+  VW ALL ACR    +++G +A  ++ RL    
Sbjct: 435 MVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQ 494

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G YVLLSN+Y    RW     VR +M+ KG++K  G S  EL   +H F  GD SHP++
Sbjct: 495 TGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQS 554

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + I K L  L++R +  G+ P  E  L DV EE+KEG+L  HSEKLA+A+ ++ T+PGT 
Sbjct: 555 KMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPGTP 614

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFH 397
           IRI+ NLR C DCH   K+IS +  R II++D  R H
Sbjct: 615 IRITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIH 651



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 103/237 (43%), Gaps = 13/237 (5%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSS--KVEPDKFTFASVIYGCARLGALNH 59
           PD+  V +N ++ G    +   +AL  F  M        PD +T+   +  CA    L  
Sbjct: 81  PDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAATDGLVL 140

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H+      ++ N  ++ + I MY++CG+   A ++F+ +Q  DV  WNAMISG A 
Sbjct: 141 GRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAH 200

Query: 120 HGLAADASAIFTKMEMFNVL-PDSITFLGLLTACSHCGLVEEG--RKYFDHMRSRYSIQP 176
            GL   A  +F ++       PD+ T   +L +     + +    +  FD MR +  I  
Sbjct: 201 AGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGLIS- 259

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGE 230
               + AM+ +        EA  L   M    +EPD V    +L +C     L LG+
Sbjct: 260 ----WNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGK 312



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 14/137 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVVSW S+I  + R+    EA+  F +M    +EPD   F +++  C+  G L+  
Sbjct: 353 MGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMG 412

Query: 61  -YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ----RNDVSVWNAMIS 115
            ++ +++  E  I       A ++D+  + G I   +E +D +     + +  VW A++ 
Sbjct: 413 KHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCI---REAYDFIMVMPIKPNERVWGALLG 469

Query: 116 GVAIHG------LAADA 126
              IH       LAAD+
Sbjct: 470 ACRIHSNMDIGLLAADS 486


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 157/413 (38%), Positives = 248/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D+++WN++I   V +   +  LR    M +  V PD  T  S++  C+ L A    
Sbjct: 314 MKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQG 373

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I +  +E +  +   LI+MYSKCG ++ + +VF  ++  DV  W A+IS   ++
Sbjct: 374 KEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMY 433

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A   F +ME   ++PD + F+ ++ ACSH GLVEEG  YF  M+  Y I+P++EH
Sbjct: 434 GEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEH 493

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  +VDLL R+  +++A   I SM ++PD  +W ALLSACR     E+ E     I+ ++
Sbjct: 494 YACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELN 553

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVL+SN+Y  L +WD   ++R+ +K +G++K  G SW+E+   ++ F  G +  
Sbjct: 554 PDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFF 613

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            + + ++K+LG L      EG++   + VL D+ E+EK   L  HSE+LA+A+G+L T P
Sbjct: 614 EQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKP 673

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT +++ KNLR+C DCH+  K IS++++R ++VRD  RFH F+ G CSCGDYW
Sbjct: 674 GTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 726



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 113/224 (50%), Gaps = 10/224 (4%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P  +V  WNS+I     N  F EAL  + E    +++PD +TF SVI  CA L     A 
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H+ +++     +  +  ALIDMY +   +  A++VF+ +   DV  WN++ISG   +G
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 195

Query: 122 LAADASAIFTK-----MEMFNVL-PDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSI 174
              +A  I+ +     MEM N   PD +T   +L AC H G +E G+   D+M  S Y  
Sbjct: 196 YWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYEC 255

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
                +   ++++  + G++  +  + + M  + D V W ++++
Sbjct: 256 DTTASN--ILINMYAKCGNLLASQEVFSGMKCK-DSVSWNSMIN 296



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 121/261 (46%), Gaps = 41/261 (15%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEAL-------RFFREMLSSKVEPDKFTFASVIYGCAR 53
           MP +DVVSWNS+I G+  N  ++EAL       + F EM++ + +PD  T  S++  C  
Sbjct: 176 MPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVN-QFKPDLLTITSILQACGH 234

Query: 54  LGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAM 113
           LG L    +VH+ +I    E +   S  LI+MY+KCG +  ++EVF  ++  D   WN+M
Sbjct: 235 LGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSM 294

Query: 114 ISGVAIHGLAADASAIF-------------------------------TKMEMFNVLPDS 142
           I+    +G   D+  +F                               ++M    V PD 
Sbjct: 295 INVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDM 354

Query: 143 ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
            T L +L  CS      +G++    +  +  ++  +     ++++  + G +  ++ +  
Sbjct: 355 ATMLSILPVCSLLAAKRQGKEIHGCI-FKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFK 413

Query: 203 SMTMEPDVVVWRALLSACRTF 223
            M  + DVV W AL+SAC  +
Sbjct: 414 LMKTK-DVVTWTALISACGMY 433



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 83/177 (46%), Gaps = 3/177 (1%)

Query: 44  FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           F+S+    A        + +H+LII   +  + I SA LI  Y+       +  VF    
Sbjct: 16  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLAS 75

Query: 104 -RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR 162
             N+V +WN++I  +  +GL ++A +++++ +   + PD+ TF  ++ AC+     E  +
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 163 KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              D +         L    A++D+  R   +++A  +   M +  DVV W +L+S 
Sbjct: 136 SIHDRVLD-MGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLR-DVVSWNSLISG 190


>gi|222618959|gb|EEE55091.1| hypothetical protein OsJ_02835 [Oryza sativa Japonica Group]
          Length = 575

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 167/413 (40%), Positives = 241/413 (58%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++VVSW+++I G+        A+  FR  L   V  + FT + ++  CA        
Sbjct: 164 MPKRNVVSWSALICGYADAGMHSAAMEIFRLALEEAVPVNDFTVSCILRVCAAATLFELG 223

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   I+  +  +  + ++L+ +YSKCG ++ A +VF      ++ +WNA ++  A H
Sbjct: 224 AQVHARSIKTALNASPFVGSSLVSLYSKCGLVECAYQVFGEAPERNLGIWNAGLNASAQH 283

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A   F  M+     P+SITFL L+TACSH GLV+EG++YF  M+  Y I+PQ EH
Sbjct: 284 GHTTAAFQRFMDMQNAGFRPNSITFLSLITACSHAGLVDEGKRYFSLMK-EYRIEPQAEH 342

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y AMVDLLGR G I EA GLI SM MEP   VW ALL ACR FK  +   +A   +    
Sbjct: 343 YAAMVDLLGRVGRISEALGLIESMPMEPPEYVWGALLMACRMFKDADAAAIAAKRLFETG 402

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G ++LLS+ Y    R   A   R+ M+  GVRK  G SWLE AG +H F +  R H
Sbjct: 403 SRSSGAHMLLSSTYAAAGRHMDAALARKAMRDAGVRKETGLSWLEAAGEVHTFVSNCRRH 462

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P +  I  +L  + ++ ++ G++  T  V+ DV ++EK+  + +HSE+LA+  G+L    
Sbjct: 463 PRSNEIYNVLEKVGEKMEAAGYVADTSAVVKDVDKDEKQATMRYHSERLAIGLGLLIVPE 522

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH+ +K +S+   R++I+RD  RFHRFE G+CSCGD+W
Sbjct: 523 GVPIRVMKNLRVCDDCHNAVKYLSKCTGRIVILRDNRRFHRFEDGVCSCGDFW 575



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 25/215 (11%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
            +W+S+I  F +N     A   FR ML++ V        S   G    G           
Sbjct: 88  AAWSSLISSFSQNGLPAAAFDAFRRMLAAGVPATDRNIPSAAKGTPFAG----------- 136

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
                   +  + ++++DMY+KCG +  A+ +FD + + +V  W+A+I G A  G+ + A
Sbjct: 137 --------DVFVGSSVLDMYAKCGHLADARRLFDEMPKRNVVSWSALICGYADAGMHSAA 188

Query: 127 SAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLEHYGAM 184
             IF ++ +   +P +  T   +L  C+   L E G +   H RS + ++        ++
Sbjct: 189 MEIF-RLALEEAVPVNDFTVSCILRVCAAATLFELGAQV--HARSIKTALNASPFVGSSL 245

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           V L  + G +E AY +      E ++ +W A L+A
Sbjct: 246 VSLYSKCGLVECAYQVFGEAP-ERNLGIWNAGLNA 279


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 165/413 (39%), Positives = 254/413 (61%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  ++VVSW S+I  + +N  F+EAL  F +M    + P+++T A +    A L AL   
Sbjct: 285 LQSRNVVSWTSIIAAYFQNEFFEEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLG 344

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H    +  ++ N ++  ALI MY K G I  A+ VF  +   ++  WNA+I+G + H
Sbjct: 345 DQLHARAEKSGLKGNVMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHH 404

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A ++F  M      P+ +TF+G++ AC+H  LV+EG  YF+H+  ++ I P LEH
Sbjct: 405 GLGKEALSMFQDMMATGERPNYVTFIGVILACAHLKLVDEGFYYFNHLMKQFRIVPGLEH 464

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG-EVA--IVNIS 237
           Y  +V LL R+G ++EA   + S  +  DVV WR LL+AC   K  + G ++A  ++ + 
Sbjct: 465 YTCIVGLLSRSGRLDEAENFMRSHQINWDVVSWRTLLNACYVHKHYDKGRKIAEYLLQLE 524

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y+LLSNM+  ++RWD    +R++M+++ V+K  G SWLE+  V H F + D  H
Sbjct: 525 PRDVGTYILLSNMHARVRRWDHVVEIRKLMRERNVKKEPGVSWLEIRNVAHVFTSEDIKH 584

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PEA  I + +  L+ + +  G++P  + VL D+ +E+K  NL +HSEKLA+AYG++KT  
Sbjct: 585 PEANLIYENVKDLLSKIRPLGYVPDIDNVLHDIEDEQKVDNLSYHSEKLAVAYGLMKTPS 644

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  I + KNLR+C DCH+ IK+IS++  RVI+VRD  RFH F+ G CSCGDYW
Sbjct: 645 GAPITVIKNLRMCDDCHTAIKLISKVANRVIVVRDANRFHHFQNGCCSCGDYW 697



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P  D+  +N ++ G +++    EA+   + ++S  +E +  T+ ++   CA L  +   
Sbjct: 184 VPGNDIFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLG 243

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +++  I+ +  + +++IDMY KCG +   +  FD +Q  +V  W ++I+    +
Sbjct: 244 KQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQN 303

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS-IQPQLE 179
               +A  +F+KME+  + P+  T   L  + +    +  G +   H R+  S ++  + 
Sbjct: 304 EFFEEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQL--HARAEKSGLKGNVM 361

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A++ +  ++G I  A  + ++MT   +++ W A+++ 
Sbjct: 362 VGNALIIMYFKSGDILAAQSVFSNMTC-CNIITWNAIITG 400



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 107/220 (48%), Gaps = 4/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           MP ++VVSW++++ G+++N    E    F++M+    + P+++  A+ I  C     +  
Sbjct: 83  MPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSCDSQMYV-E 141

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
               H   ++  +E +  +  ALI +YSKC  +  A ++  TV  ND+  +N +++G+  
Sbjct: 142 GKQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFCYNLVVNGLLQ 201

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           H   A+A  +   +    +  ++ T++ +   C+    +  G++    M  +  I   + 
Sbjct: 202 HTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQML-KSDIDCDVY 260

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              +++D+ G+ G++         +    +VV W ++++A
Sbjct: 261 IGSSIIDMYGKCGNVLSGRTFFDRLQSR-NVVSWTSIIAA 299



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 58/111 (52%), Gaps = 9/111 (8%)

Query: 53  RLGALNHAYWV---HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV 109
           + G   HA+     HN    K  +LN     +LI++Y KC ++ +A+++FD++ R +V  
Sbjct: 36  KFGRTIHAHLTITNHNYRDSKVNQLN-----SLINLYVKCDEVSIARKLFDSMPRRNVVS 90

Query: 110 WNAMISGVAIHGLAADASAIFTKMEMF-NVLPDSITFLGLLTACSHCGLVE 159
           W+A+++G   +G   +   +F KM +  N+ P+       +++C     VE
Sbjct: 91  WSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSCDSQMYVE 141


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 171/413 (41%), Positives = 238/413 (57%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P   +VS N++I G  +N   + AL +F  M S  V  D  TF S I  C+ L AL   
Sbjct: 234 LPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQG 293

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++  ++    +   L+ MYS+CG +  ++ VF     +D  + +AMIS    H
Sbjct: 294 QQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFH 353

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +M      P  +TFL LL ACSH GL EEG   F+ M   Y +QP ++H
Sbjct: 354 GHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKH 413

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  +VDLLGR+G ++EA  LI SM + PD V+W+ LLSAC+T K  ++ E     +  L 
Sbjct: 414 YTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELD 473

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D   YVLLSN+    +RW     VR+ M+   VRK  G SW+EL G IHQF  GD SH
Sbjct: 474 PHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESH 533

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + ID+ L  ++ + +  G+ P   +VL D+ +EEKE +L HHSEKLA+A+  L    
Sbjct: 534 PRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPE 593

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH  IK++S++  R I+VRD  RFH F+ G CSC DYW
Sbjct: 594 GVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 646



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 106/253 (41%), Gaps = 33/253 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++V +WN+M+ G       +E+L FF +M    + PD+F   SV   CA L  +   
Sbjct: 133 MPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTG 192

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++   ++ +  + ++L  MY +CG +Q  + V   +    +   N +I+G   +
Sbjct: 193 RQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQN 252

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD-------------- 166
           G +  A   F  M    V  D +TF+  +++CS    + +G++                 
Sbjct: 253 GDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVM 312

Query: 167 ----HMRSRYSIQPQLEH------------YGAMVDLLGRAGHIEEAYGLITSMT---ME 207
               HM SR       E               AM+   G  GH ++A  L   M     E
Sbjct: 313 TCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAE 372

Query: 208 PDVVVWRALLSAC 220
           P  V + ALL AC
Sbjct: 373 PSDVTFLALLYAC 385



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 8/161 (4%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREM----LSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           V W+     F    R   ALR  R++     +S    D+FT   ++   A LG L  A  
Sbjct: 38  VLWSDAARLFSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAA-- 95

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
               + E+    N +    L   Y K G +  A+++FD +   +V+ WNAM++G+   G 
Sbjct: 96  --RELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGF 153

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
             ++   F  M    + PD      +   C+    V  GR+
Sbjct: 154 DEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQ 194


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 164/413 (39%), Positives = 249/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + +++VV W +++  +++N  F+E+L  F  M      P+++TFA ++  CA + AL H 
Sbjct: 282 LQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHG 341

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  + +   + + I+  ALI+MYSK G I  +  VF  +   D+  WNAMI G + H
Sbjct: 342 DLLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHH 401

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL   A  +F  M      P+ +TF+G+L+A SH GLV+EG  Y +H+   + I+P LEH
Sbjct: 402 GLGKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEH 461

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE---VAIVNIS 237
           Y  MV LL RAG ++EA   + +  ++ DVV WR LL+AC   +  +LG     +++ + 
Sbjct: 462 YTCMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMD 521

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y LLSNMY   +RWD    +R++M+++ ++K  G SWL++   IH F +   +H
Sbjct: 522 PHDVGTYTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPGASWLDIRNDIHVFLSEGSNH 581

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           PE+  I K +  L+   K  G++P    VL DV +E+KEG L +HSEKLALAYG++K   
Sbjct: 582 PESIQIYKKVQQLLALIKPLGYVPNIASVLHDVEDEQKEGYLSYHSEKLALAYGLMKIPS 641

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IRI KNLR+C DCH+ +K+IS++  R+IIVRD  RFH F  G C+C D+W
Sbjct: 642 PAPIRIIKNLRMCDDCHTAVKLISKVTNRLIIVRDANRFHHFRDGSCTCLDHW 694



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 110/215 (51%), Gaps = 4/215 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
            D+ S+NS++   V + R +EA+   R M+   V  D  T+  V+  CA++  L     V
Sbjct: 184 NDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRV 243

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  ++   +  +  + + LIDMY KCG++  A+ VFD +Q  +V VW A+++    +G  
Sbjct: 244 HARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYF 303

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR-SRYSIQPQLEHYG 182
            ++  +FT M+    LP+  TF  LL AC+    +  G     H R  +   +  +    
Sbjct: 304 EESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGD--LLHARVEKLGFKNHVIVRN 361

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           A++++  ++G I+ +Y + T M    D++ W A++
Sbjct: 362 ALINMYSKSGSIDSSYNVFTDMIYR-DIITWNAMI 395



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 137/309 (44%), Gaps = 51/309 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           MP ++VVSWN ++ G++      E L  F+ M+S     P+++ F + +  C+  G +  
Sbjct: 76  MPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKE 135

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV---QRNDVSVWNAMISG 116
               H L+ +  +  +  + +AL+ MYS+C  +++A +V DTV     ND+  +N++++ 
Sbjct: 136 GMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNA 195

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH---------------------- 154
           +   G   +A  +  +M    V  D +T++G++  C+                       
Sbjct: 196 LVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFD 255

Query: 155 -------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
                        CG V   R  FD +++R  +      + A++    + G+ EE+  L 
Sbjct: 256 EFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVV-----WTALMTAYLQNGYFEESLNLF 310

Query: 202 TSMTME---PDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVL----LSNMYCYL 254
           T M  E   P+   +  LL+AC     L  G++    + +L   ++V+    L NMY   
Sbjct: 311 TCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKLGFKNHVIVRNALINMYSKS 370

Query: 255 KRWDTAENV 263
              D++ NV
Sbjct: 371 GSIDSSYNV 379



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 82/163 (50%), Gaps = 7/163 (4%)

Query: 81  ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM-EMFNVL 139
           +L+ +Y KCG++ +A+ +FD +   +V  WN +++G    G   +   +F  M  + N  
Sbjct: 55  SLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNAC 114

Query: 140 PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199
           P+   F   L+ACSH G V+EG +    +  ++ +        A+V +  R  H+E A  
Sbjct: 115 PNEYVFTTALSACSHGGRVKEGMQCHG-LLFKFGLVCHQYVKSALVHMYSRCSHVELALQ 173

Query: 200 LITSMTME--PDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           ++ ++  E   D+  + ++L+A     R   GE A+  + R++
Sbjct: 174 VLDTVPGEHVNDIFSYNSVLNALVESGR---GEEAVEVLRRMV 213


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 167/414 (40%), Positives = 246/414 (59%), Gaps = 15/414 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           M  ++ ++WN+M+G ++++   ++ L+ +  MLS K V PD  T+ ++  GCA +GA   
Sbjct: 463 MDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKL 522

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +    ++  + LN  ++ A I MYSKCG+I  A+++FD +   DV  WNAMI+G + 
Sbjct: 523 GDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQ 582

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG+   A+  F  M      PD I+++ +L+ CSH GLV+EG+ YFD M   + I P LE
Sbjct: 583 HGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLE 642

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           H+  MVDLLGRAGH+ EA  LI  M M+P   VW ALLSAC+     EL E+A  ++  L
Sbjct: 643 HFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFEL 702

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G Y+LL+ +Y    + D +  VR++M+ KG++K+ G SW+E+   +H FKA D S
Sbjct: 703 DSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVS 762

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+  AI   L  L+++    G++             E   +  HHSEKLA+A+GI+   
Sbjct: 763 HPQVIAIRNKLDELMEKIAHLGYV-----------RTESPRSEIHHSEKLAVAFGIMSLP 811

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
               I I KNLRIC DCH+ IK+IS +  R  ++RD +RFH F+ G CSCGDYW
Sbjct: 812 AWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 117/221 (52%), Gaps = 6/221 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++DVVSWN MI    ++ R  EAL    EM    V  D  T+ S +  CARL +L   
Sbjct: 230 MAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWG 289

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
             +H  +I    +++  +++ALI++Y+KCG  + AK VF+++Q RN VS W  +I G   
Sbjct: 290 KQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVS-WTVLIGGSLQ 348

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD-HMRSRYSIQPQL 178
           +   + +  +F +M    +  D      L++ C +   +  GR+     ++S ++    +
Sbjct: 349 YECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVV 408

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            +  +++ L  + G ++ A  + +SM+ E D+V W ++++A
Sbjct: 409 SN--SLISLYAKCGDLQNAEFVFSSMS-ERDIVSWTSMITA 446



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 4/181 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + D++ VSW  +IGG ++   F +++  F +M +  +  D+F  A++I GC     L   
Sbjct: 331 LQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLG 390

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+L ++       ++S +LI +Y+KCG +Q A+ VF ++   D+  W +MI+  +  
Sbjct: 391 RQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQI 450

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A   F  M+  N    +IT+  +L A    G  E+G K +  M S+  + P    
Sbjct: 451 GNIIKAREFFDGMDTRN----AITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVT 506

Query: 181 Y 181
           Y
Sbjct: 507 Y 507



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 110/251 (43%), Gaps = 38/251 (15%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNH 59
           MP +DV SWN+++ G+ +  RF + L  F  M  S    P+ FTF  V+  C  LG    
Sbjct: 97  MPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCREL 156

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR--------------- 104
           A  +  L  +     +  +  AL+DM+ +CG +  A  +F  ++R               
Sbjct: 157 APQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAK 216

Query: 105 ----------------NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGL 148
                            DV  WN MI+ ++  G   +A  +  +M    V  DS T+   
Sbjct: 217 LYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSS 276

Query: 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY--GAMVDLLGRAGHIEEAYGLITSMTM 206
           LTAC+    +  G++   H +   S+ PQ++ Y   A+++L  + G  +EA  +  S+  
Sbjct: 277 LTACARLFSLGWGKQL--HAKVIRSL-PQIDPYVASALIELYAKCGSFKEAKRVFNSL-Q 332

Query: 207 EPDVVVWRALL 217
           + + V W  L+
Sbjct: 333 DRNSVSWTVLI 343



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 5/149 (3%)

Query: 73  ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTK 132
           E N I    +++ Y+K G +  A+E+FD + R DV+ WN ++SG        D    F  
Sbjct: 68  EPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVS 127

Query: 133 MEMF-NVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLEHYGAMVDLLGR 190
           M    + LP++ TF  ++ +C   G  E   +      +  +   P +E   A+VD+  R
Sbjct: 128 MHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVE--TALVDMFVR 185

Query: 191 AGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            G+++ A  L + +   P +    ++L+ 
Sbjct: 186 CGYVDFASRLFSQIE-RPTIFCRNSMLAG 213


>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14330-like [Glycine max]
          Length = 650

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 160/414 (38%), Positives = 248/414 (59%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++VVSWN++I GF    R  E L  FR M    +     T  +++  CA++ AL+  
Sbjct: 237 MPQRNVVSWNTLIAGFAGQGRVFETLSAFRVMQREGMGFSWITLTTMLPVCAQVTALHSG 296

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I++ +   +  L  +L+DMY+KCG+I   ++VFD +   D++ WN M++G +I+
Sbjct: 297 KEIHGQILKSRKNADVPLLNSLMDMYAKCGEIGYCEKVFDRMHSKDLTSWNTMLAGFSIN 356

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M  + + P+ ITF+ LL+ CSH GL  EG++ F ++   + +QP LEH
Sbjct: 357 GQIHEALCLFDEMIRYGIEPNGITFVALLSGCSHSGLTSEGKRLFSNVMQDFGVQPSLEH 416

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  +VD+LGR+G  +EA  +  ++ M P   +W +LL++CR +  + L EV    +  I 
Sbjct: 417 YACLVDILGRSGKFDEALSVAENIPMRPSGSIWGSLLNSCRLYGNVALAEVVAERLFEIE 476

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G+YV+LSN+Y     W+  + VRE+M   G++K  G SW+++   IH F AG  S 
Sbjct: 477 PNNPGNYVMLSNIYANAGMWEDVKRVREMMALTGMKKDAGCSWIQIKHKIHTFVAGGSSD 536

Query: 298 PEAQA-IDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
               A   KI   L    K+ G++P T +VL D++EE K   +  HSE+LA  + ++ T 
Sbjct: 537 FRCSAEYKKIWNELSNAVKNLGYVPNTGVVLHDINEEMKAVWVCEHSERLAAVFALINTG 596

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  IRI+KNLR+C DCHSW+K +S++ RR+I++RD  RFH FE G CSC DYW
Sbjct: 597 AGMPIRITKNLRVCVDCHSWMKAVSKVTRRLIVLRDTNRFHHFENGSCSCKDYW 650



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 106/258 (41%), Gaps = 46/258 (17%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P++ V  W +M  G+ RN    EAL  +R+MLS  V+P  F F+  +  C+ L       
Sbjct: 138 PEEPV--WVAMAIGYSRNGFSHEALLLYRDMLSCCVKPGNFAFSMALKACSDLDNALVGR 195

Query: 62  WVHNLIIEKKI-ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            +H  I++  + E + +++ AL+ +Y + G      +VF+ + + +V  WN +I+G A  
Sbjct: 196 AIHAQIVKHDVGEADQVVNNALLGLYVEIGCFDEVLKVFEEMPQRNVVSWNTLIAGFAGQ 255

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSH-------------------------- 154
           G   +  + F  M+   +    IT   +L  C+                           
Sbjct: 256 GRVFETLSAFRVMQREGMGFSWITLTTMLPVCAQVTALHSGKEIHGQILKSRKNADVPLL 315

Query: 155 ---------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
                    CG +    K FD M S+      L  +  M+      G I EA  L   M 
Sbjct: 316 NSLMDMYAKCGEIGYCEKVFDRMHSK-----DLTSWNTMLAGFSINGQIHEALCLFDEMI 370

Query: 206 ---MEPDVVVWRALLSAC 220
              +EP+ + + ALLS C
Sbjct: 371 RYGIEPNGITFVALLSGC 388



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 92/220 (41%), Gaps = 13/220 (5%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEP-----DKFTFASVIYGCARLGALNHAYWV 63
           +NS +    +    D+ALR      SSK  P     ++ + +  ++ C    +L H   +
Sbjct: 36  FNSTLKSLCKWGNLDKALRLIE---SSKPTPIEEEEEEESISLFLHACISRRSLEHGRKL 92

Query: 64  HNLII--EKKIELNFILSAALIDMYSKCGKIQMAKEVF--DTVQRNDVSVWNAMISGVAI 119
           H  ++  + ++  N  L   LI +YS CG++  A+ VF  D  +  +  VW AM  G + 
Sbjct: 93  HLHLLRSQNRVLENPTLKTKLITLYSVCGRVNEARRVFQIDDEKPPEEPVWVAMAIGYSR 152

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G + +A  ++  M    V P +  F   L ACS       GR     +      +    
Sbjct: 153 NGFSHEALLLYRDMLSCCVKPGNFAFSMALKACSDLDNALVGRAIHAQIVKHDVGEADQV 212

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A++ L    G  +E   +   M  + +VV W  L++ 
Sbjct: 213 VNNALLGLYVEIGCFDEVLKVFEEMP-QRNVVSWNTLIAG 251


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 168/413 (40%), Positives = 244/413 (59%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D+D  +W  MI  + R     EAL  F +M    V P   +  S++  CA L +L + 
Sbjct: 291 MEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYG 350

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++  + + +  +++ L+ MY KCG++  AK VFD     D+ +WN++ISG A H
Sbjct: 351 RQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASH 410

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  +F +M +   +P+ +T + +LTACS+ G +EEG + F+ M S++ + P +EH
Sbjct: 411 GLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESMESKFCVTPTVEH 470

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y   VD+LGRAG +++A  LI SMT++PD  VW ALL AC+T  RL+L EVA   +  I 
Sbjct: 471 YSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFEIE 530

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQF-KAGDRS 296
               G Y+LLS++     +W     +R+ M+ K V K  G SW+E+   +H F + G R+
Sbjct: 531 PENAGPYILLSSINASRSKWGDVAEMRKNMRTKNVSKFPGCSWIEVGKKVHMFTRGGIRN 590

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HPE   I  +L       +  G+ P    VL DV EEEK  +L  HSE+LA+AYG+LK  
Sbjct: 591 HPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLP 650

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDY 409
            G  IR+ KNLR+C DCH+ IK+IS++  R II+RD  RFH F  G CSC DY
Sbjct: 651 EGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDY 703



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 109/233 (46%), Gaps = 13/233 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++V++W +MI G+ +N R D A + F E++  K E    ++ S++ G    G +  A
Sbjct: 198 MRERNVITWTTMITGYGQNKRVDVARKLF-EVMPEKTE---VSWTSMLLGYTLSGRIEDA 253

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                ++  K +    I   A+I    + G+I  A+ VFD ++  D + W  MI      
Sbjct: 254 EEFFEVMPMKPV----IACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERK 309

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M+   V P   + + +L+ C+    ++ GR+   H+  R      +  
Sbjct: 310 GFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHL-VRCQFDGDVYV 368

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI 233
              ++ +  + G + +A  L+       D+++W +++S    +    LGE A+
Sbjct: 369 ASVLMTMYVKCGELVKA-KLVFDRFPSKDIIMWNSIISG---YASHGLGEEAL 417



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 110/240 (45%), Gaps = 27/240 (11%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++++VSWN ++ G+++N   +EA   F  M    V     ++ +++ G  + G +  A
Sbjct: 74  MPERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNV----VSWTAMVKGYVQEGMVVEA 129

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +   + E+      ++   LID     G+I  A++++D +   DV     MI G+   
Sbjct: 130 ELLFWRMPERNEVSWTVMFGGLID----GGRIDDARKLYDMMPGKDVVASTNMIGGLCRE 185

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  IF +M   NV    IT+  ++T       V+  RK F+ M  +  +      
Sbjct: 186 GRVDEAREIFDEMRERNV----ITWTTMITGYGQNKRVDVARKLFEVMPEKTEVS----- 236

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA-IVNISRL 239
           + +M+     +G IE+A      M M+P V+   A++ A        LGEV  IV   R+
Sbjct: 237 WTSMLLGYTLSGRIEDAEEFFEVMPMKP-VIACNAMIVA--------LGEVGEIVKARRV 287



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 105/269 (39%), Gaps = 49/269 (18%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K + SWNS++ G+  N    EA + F EM      P++                      
Sbjct: 46  KAIGSWNSIVSGYFANGLPREARQMFDEM------PER---------------------- 77

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
                      N +    L+  Y K   I+ A+ VF+ +   +V  W AM+ G    G+ 
Sbjct: 78  -----------NIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMV 126

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F +M   N +  ++ F GL+      G +++ RK +D M  +  +         
Sbjct: 127 VEAELLFWRMPERNEVSWTVMFGGLIDG----GRIDDARKLYDMMPGKDVVAST-----N 177

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD 243
           M+  L R G ++EA  +   M  E +V+ W  +++     KR+++       +       
Sbjct: 178 MIGGLCREGRVDEAREIFDEMR-ERNVITWTTMITGYGQNKRVDVARKLFEVMPEKTEVS 236

Query: 244 YVLLSNMYCYLKRWDTAENVREIMKKKGV 272
           +  +   Y    R + AE   E+M  K V
Sbjct: 237 WTSMLLGYTLSGRIEDAEEFFEVMPMKPV 265



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 16/193 (8%)

Query: 83  IDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDS 142
           I   S+ G+I  A++ FD+++   +  WN+++SG   +GL  +A  +F +M   N+    
Sbjct: 24  ISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPERNI---- 79

Query: 143 ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
           +++ GL++      ++EE R  F+ M  R  +      + AMV    + G + EA  L  
Sbjct: 80  VSWNGLVSGYIKNRMIEEARNVFEIMPERNVVS-----WTAMVKGYVQEGMVVEAELLFW 134

Query: 203 SMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNM---YCYLKRWDT 259
            M  E + V W  +        R++           + G D V  +NM    C   R D 
Sbjct: 135 RMP-ERNEVSWTVMFGGLIDGGRIDDARKL---YDMMPGKDVVASTNMIGGLCREGRVDE 190

Query: 260 AENVREIMKKKGV 272
           A  + + M+++ V
Sbjct: 191 AREIFDEMRERNV 203


>gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 664

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 162/412 (39%), Positives = 249/412 (60%), Gaps = 2/412 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K+VVSW ++I GF +   ++ A+  + EML   ++P+++T A+V+  C++ GAL   
Sbjct: 253 MPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTVAAVLSACSKSGALGSG 312

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I++  I+L+  +  +L+DMY+KCG++  A  VF  +   D+  W AMI G A+H
Sbjct: 313 IRIHGYILDNGIKLDRAIGTSLLDMYAKCGEVDCAATVFSNMNHKDILSWTAMIQGWAVH 372

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A   F +M      PD + FL +LTAC + G V+ G  +FD MR  Y+I+P L+H
Sbjct: 373 GRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSGEVDLGLNFFDSMRLDYAIEPTLKH 432

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFK--RLELGEVAIVNISR 238
           Y  +VDLLGRAG ++EA+ L+  M + PD+  W AL  AC+  K  R ++    ++ +  
Sbjct: 433 YVLVVDLLGRAGKLDEAHELVEYMPINPDLTTWAALYRACKAHKSNRTDIVLQNLLELDP 492

Query: 239 LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
            + G Y+ L   +    ++   E  R  ++KK   +S G S++EL   +++F A D +H 
Sbjct: 493 ELRGSYIFLDKTHAAKGKYQDVEKRRLSLQKKVKERSMGCSYIELDCQLNKFAADDYTHK 552

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           +AQ I   L  +I      G++P  +  + D+ EEEKE     HSEKLAL  G+L+T+PG
Sbjct: 553 QAQEIRLKLEGIISLAIERGYIPGADWSIHDIEEEEKESVTGIHSEKLALTLGLLRTAPG 612

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T IRI KNLRIC DCHS +K +S++ +R I++RD  +FH F+ G CSCGDYW
Sbjct: 613 TTIRIIKNLRICGDCHSLMKYVSKISQRGILLRDARQFHHFKDGSCSCGDYW 664



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 108/225 (48%), Gaps = 16/225 (7%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +++   +N++I G   NARF+ ++R F  ML+  V+PD+ TF  V+   ++LG       
Sbjct: 88  ERNPFVFNALIRGLTENARFECSVRHFILMLTLGVKPDRLTFPFVLKSNSKLGFRWLGRA 147

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF----DTVQRNDVSVWNAMISGVA 118
           +H   ++  ++ +  +  +L+DMY+K G++  A +VF    D +++  + +WN +++G  
Sbjct: 148 LHAATLKNFVDCDSFVRVSLVDMYAKTGQLNHAFQVFEETPDRIKKESILLWNVLVNGYC 207

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
                  A+ +F  M   N    S ++  L+      G +   ++ F+ M  +  +    
Sbjct: 208 RAKDMQMATTLFRSMPERN----SGSWSTLIKGYVDNGELNRAKQLFELMPEKNVVS--- 260

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSAC 220
             +  +++   + G  E A      M    ++P+     A+LSAC
Sbjct: 261 --WTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTVAAVLSAC 303


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 169/397 (42%), Positives = 241/397 (60%), Gaps = 3/397 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K ++SWN+M+  +  N    EA+  F  M    +EPD  T A+V+  C  + AL+    +
Sbjct: 145 KGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRI 204

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H +I  +++  + +L  AL+DMY+ CG ++ A++VFD++   DV  W ++IS    HG  
Sbjct: 205 HEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHG 264

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F KM    + PDSI F+ +L ACSH GL++ G+ YF  M S + I P+LEHY  
Sbjct: 265 REAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYAC 324

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---M 240
           MVDLLGRAG I EAY  I  M ++P+  VW ALL ACR    +++G +A  ++ RL    
Sbjct: 325 MVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQ 384

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G YVLLSN+Y    RW     VR +M+ KG++K  G S  EL   +H F  GD SHP++
Sbjct: 385 TGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQS 444

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
           + I K L  L++R +  G+ P  E  L DV EE+KEG+L  HSEKLA+A+ ++ T+PGT 
Sbjct: 445 KMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPGTP 504

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFH 397
           IRI+ NLR C DCH   K+IS +  R II++D  R H
Sbjct: 505 IRITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIH 541



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 113/271 (41%), Gaps = 54/271 (19%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D +V   +S I  + R  R D+A + F EM       D  ++ ++I G A  G    A  
Sbjct: 44  DGNVFVAHSAISMYARCGRPDDAYQMFEEMQYR----DVVSWNAMISGFAHAGLFGRAMD 99

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGK-----IQMAKEVFDTVQRNDVSVWNAMISGV 117
           V   ++   ++     +  +  +    GK     I + K VFD ++   +  WNAM++  
Sbjct: 100 VFRELV--ALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGLISWNAMLAVY 157

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC------------------------- 152
             + +  +A  +F +M+   + PD++T   +L +C                         
Sbjct: 158 TNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSM 217

Query: 153 ----------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
                     ++CG ++E R  FD M +R  +      + +++   GR GH  EA  L  
Sbjct: 218 LLENALMDMYANCGCLKEARDVFDSMGTRDVVS-----WTSIISAYGRHGHGREAIDLFE 272

Query: 203 SMT---MEPDVVVWRALLSACRTFKRLELGE 230
            M    +EPD + + A+L+AC     L++G+
Sbjct: 273 KMCGQGLEPDSIAFVAILAACSHAGLLDMGK 303



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 11/186 (5%)

Query: 51  CARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVW 110
           CA    L     +H+      ++ N  ++ + I MY++CG+   A ++F+ +Q  DV  W
Sbjct: 22  CAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSW 81

Query: 111 NAMISGVAIHGLAADASAIFTKMEMFNVL-PDSITFLGLLTACSHCGLVEEG--RKYFDH 167
           NAMISG A  GL   A  +F ++       PD+ T   +L +     + +    +  FD 
Sbjct: 82  NAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDE 141

Query: 168 MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFK 224
           MR +  I      + AM+ +        EA  L   M    +EPD V    +L +C    
Sbjct: 142 MRFKGLIS-----WNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVS 196

Query: 225 RLELGE 230
            L LG+
Sbjct: 197 ALSLGK 202



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 14/137 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVVSW S+I  + R+    EA+  F +M    +EPD   F +++  C+  G L+  
Sbjct: 243 MGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMG 302

Query: 61  -YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ----RNDVSVWNAMIS 115
            ++ +++  E  I       A ++D+  + G I   +E +D +     + +  VW A++ 
Sbjct: 303 KHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCI---REAYDFIMVMPIKPNERVWGALLG 359

Query: 116 GVAIHG------LAADA 126
              IH       LAAD+
Sbjct: 360 ACRIHSNMDIGLLAADS 376


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 157/413 (38%), Positives = 248/413 (60%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D+++WN++I   V +   +  LR    M +  V PD  T  S++  C+ L A    
Sbjct: 477 MKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQG 536

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I +  +E +  +   LI+MYSKCG ++ + +VF  ++  DV  W A+IS   ++
Sbjct: 537 KEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMY 596

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A   F +ME   ++PD + F+ ++ ACSH GLVEEG  YF  M+  Y I+P++EH
Sbjct: 597 GEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEH 656

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  +VDLL R+  +++A   I SM ++PD  +W ALLSACR     E+ E     I+ ++
Sbjct: 657 YACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELN 716

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVL+SN+Y  L +WD   ++R+ +K +G++K  G SW+E+   ++ F  G +  
Sbjct: 717 PDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFF 776

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            + + ++K+LG L      EG++   + VL D+ E+EK   L  HSE+LA+A+G+L T P
Sbjct: 777 EQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKP 836

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT +++ KNLR+C DCH+  K IS++++R ++VRD  RFH F+ G CSCGDYW
Sbjct: 837 GTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 889



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 122/226 (53%), Gaps = 4/226 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D VSWN+MI G+ +   ++E+++ F EM++ + +PD  T  S++  C  LG L    +V
Sbjct: 280 RDAVSWNTMICGYSQVGLYEESIKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYV 338

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H+ +I    E +   S  LI+MY+KCG +  ++EVF  ++  D   WN+MI+    +G  
Sbjct: 339 HDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSF 398

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F KM   +V PDS+T++ LL+  +  G +  G++    + ++      +     
Sbjct: 399 DEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDL-AKMGFNSNIVVSNT 456

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG 229
           +VD+  + G + ++  +  +M    D++ W  ++++C   +   LG
Sbjct: 457 LVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIASCVHSEDCNLG 501



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 116/266 (43%), Gaps = 42/266 (15%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P  +V  WNS+I     N  F EAL  + E    +++PD +TF SVI  CA L     A 
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H+ +++     +  +  ALIDMY +   +  A++VF+ +   DV  WN++ISG   +G
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 195

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE--------------------- 160
              +A  I+ +     V+PDS T   +L AC   G VEE                     
Sbjct: 196 YWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNN 255

Query: 161 --------------GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT- 205
                         GR+ FD M  R ++      +  M+    + G  EE+  L   M  
Sbjct: 256 GLLSMYCKFNGLIDGRRIFDKMVLRDAVS-----WNTMICGYSQVGLYEESIKLFMEMVN 310

Query: 206 -MEPDVVVWRALLSACRTFKRLELGE 230
             +PD++   ++L AC     LE G+
Sbjct: 311 QFKPDLLTITSILQACGHLGDLEFGK 336



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 140/309 (45%), Gaps = 39/309 (12%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVVSWNS+I G+  N  ++EAL  +    +  V PD +T +SV+  C  LG++   
Sbjct: 176 MPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG 235

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H LI +  I+ + I++  L+ MY K   +   + +FD +   D   WN MI G +  
Sbjct: 236 DIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQV 295

Query: 121 GLAADASAIFTKMEMFNVL-PDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQL 178
           GL  ++  +F  MEM N   PD +T   +L AC H G +E G+   D+M  S Y      
Sbjct: 296 GLYEESIKLF--MEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTA 353

Query: 179 EH-----------------------------YGAMVDLLGRAGHIEEAYGLITSMT--ME 207
            +                             + +M+++  + G  +EA  L   M   ++
Sbjct: 354 SNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVK 413

Query: 208 PDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSN----MYCYLKRWDTAENV 263
           PD V +  LLS       L LG+    +++++     +++SN    MY        +  V
Sbjct: 414 PDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKV 473

Query: 264 REIMKKKGV 272
            E MK + +
Sbjct: 474 FENMKARDI 482



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 119/224 (53%), Gaps = 5/224 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD VSWNSMI  +++N  FDEA++ F+ M+ + V+PD  T+  ++    +LG L+  
Sbjct: 377 MKCKDSVSWNSMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLHLG 435

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  + +     N ++S  L+DMY+KCG++  + +VF+ ++  D+  WN +I+   +H
Sbjct: 436 KELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIAS-CVH 494

Query: 121 GLAADASA-IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
               +    + ++M    V PD  T L +L  CS      +G++    +  +  ++  + 
Sbjct: 495 SEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCI-FKLGLESDVP 553

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTF 223
               ++++  + G +  ++ +   M  + DVV W AL+SAC  +
Sbjct: 554 VGNVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTALISACGMY 596



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 83/177 (46%), Gaps = 3/177 (1%)

Query: 44  FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           F+S+    A        + +H+LII   +  + I SA LI  Y+       +  VF    
Sbjct: 16  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLAS 75

Query: 104 -RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR 162
             N+V +WN++I  +  +GL ++A +++++ +   + PD+ TF  ++ AC+     E  +
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 163 KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              D +         L    A++D+  R   +++A  +   M +  DVV W +L+S 
Sbjct: 136 SIHDRVLD-MGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLR-DVVSWNSLISG 190


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 171/413 (41%), Positives = 238/413 (57%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P   +VS N++I G  +N   + AL +F  M S  V  D  TF S I  C+ L AL   
Sbjct: 296 LPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQG 355

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +++  ++    +   L+ MYS+CG +  ++ VF     +D  + +AMIS    H
Sbjct: 356 QQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFH 415

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +M      P  +TFL LL ACSH GL EEG   F+ M   Y +QP ++H
Sbjct: 416 GHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKH 475

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  +VDLLGR+G ++EA  LI SM + PD V+W+ LLSAC+T K  ++ E     +  L 
Sbjct: 476 YTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELD 535

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D   YVLLSN+    +RW     VR+ M+   VRK  G SW+EL G IHQF  GD SH
Sbjct: 536 PHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESH 595

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + ID+ L  ++ + +  G+ P   +VL D+ +EEKE +L HHSEKLA+A+  L    
Sbjct: 596 PRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPE 655

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH  IK++S++  R I+VRD  RFH F+ G CSC DYW
Sbjct: 656 GVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 708



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 106/253 (41%), Gaps = 33/253 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++V +WN+M+ G       +E+L FF +M    + PD+F   SV   CA L  +   
Sbjct: 195 MPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTG 254

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++   ++ +  + ++L  MY +CG +Q  + V   +    +   N +I+G   +
Sbjct: 255 RQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQN 314

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD-------------- 166
           G +  A   F  M    V  D +TF+  +++CS    + +G++                 
Sbjct: 315 GDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVM 374

Query: 167 ----HMRSRYSIQPQLEH------------YGAMVDLLGRAGHIEEAYGLITSMT---ME 207
               HM SR       E               AM+   G  GH ++A  L   M     E
Sbjct: 375 TCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAE 434

Query: 208 PDVVVWRALLSAC 220
           P  V + ALL AC
Sbjct: 435 PSDVTFLALLYAC 447



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 8/161 (4%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREM----LSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           V W+     F    R   ALR  R++     +S    D+FT   ++   A LG L  A  
Sbjct: 100 VLWSDAARLFSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAA-- 157

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
               + E+    N +    L   Y K G +  A+++FD +   +V+ WNAM++G+   G 
Sbjct: 158 --RELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGF 215

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
             ++   F  M    + PD      +   C+    V  GR+
Sbjct: 216 DEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQ 256


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 166/413 (40%), Positives = 247/413 (59%), Gaps = 5/413 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K+VV+W+++   + RN R  +A+R    M    + P+  TF SV+  CA + AL     
Sbjct: 225 EKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRR 284

Query: 63  VH--NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           +H    ++   +E +  +  AL++MYSKCG + +A ++FD +   D+ +WN++I+  A H
Sbjct: 285 IHERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQH 344

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +M +  + P  ITF  +L ACSH G++++GRK+F      + I P+ EH
Sbjct: 345 GQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEH 404

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           +G MVDLLGRAG I ++  L+  M  EP  V W A L ACRT++ ++    A  N+ +L 
Sbjct: 405 FGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLD 464

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 YVLLSNMY    RW     +R+ M+     K  G+SW+E+   +H+F +GD  H
Sbjct: 465 PRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDH 524

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    I   L  L +  K  G++P TE+VL DV +E KE  + +HSEKLA+A+ +L T  
Sbjct: 525 PRIGEIHAELQRLTKLMKEAGYVPDTEMVLHDVKQEVKEIMVGYHSEKLAMAFALLTTPE 584

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G+ IR+ KNLR+C+DCH+  K IS+L+ R I+VRD  RFHRF+ G CSCGDYW
Sbjct: 585 GSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 637



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 127/237 (53%), Gaps = 10/237 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVV+W++M+  + RN    EAL  FR+M    V P+K T  S +  CA LG L   
Sbjct: 122 MSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSG 181

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +  + I+   ++  AL+++Y KCG+I+ A E F  +   +V  W+A+ +  A +
Sbjct: 182 ALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYARN 241

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY---SIQPQ 177
               DA  +  +M++  ++P+S TF+ +L AC+    +++GR+   H R++     ++  
Sbjct: 242 DRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRI--HERTQVLGGGLESD 299

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA----CRTFKRLELGE 230
           +    A+V++  + G++  A  +   +    D+V+W +L++      +T K LEL E
Sbjct: 300 VYVLTALVNMYSKCGNLALAGDMFDKIA-HLDLVLWNSLIATNAQHGQTEKALELFE 355



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 109/222 (49%), Gaps = 8/222 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP  D+VSWN++I  ++ N  FD    FFR ML   + P +   +  +  C     +   
Sbjct: 21  MPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPGEVGISIFLSACTDAREITIG 80

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +   I+   IE   I+  AL+ MY K G    A  VF  +   DV  W+AM++  A +
Sbjct: 81  RSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARN 140

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M++  V P+ +T +  L AC+  G +  G      + ++  IQ  +  
Sbjct: 141 GHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQ-GIQSGVVV 199

Query: 181 YGAMVDLLGRAGHIE---EAYGLITSMTMEPDVVVWRALLSA 219
             A+V+L G+ G IE   EA+G I    +E +VV W A+ +A
Sbjct: 200 GTALVNLYGKCGRIEAAVEAFGQI----VEKNVVAWSAISAA 237



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 30/181 (16%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
           ++  YS+ G I   ++ FD +   D+  WNA+I+    +         F  M +  + P 
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPG 60

Query: 142 SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG---------AMVDLLGRAG 192
            +     L+AC+    +  GR          SIQ  +   G         A+V + G+ G
Sbjct: 61  EVGISIFLSACTDAREITIGR----------SIQLAILGTGIEEESIVQTALVSMYGKLG 110

Query: 193 HIEEAYGLITSMTMEPDVVVWRALLS----------ACRTFKRLELGEVAIVNISRLMGG 242
           H  +A  +   M+   DVV W A+++          A   F++++L  VA   ++ + G 
Sbjct: 111 HCTDAASVFLRMSHR-DVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGL 169

Query: 243 D 243
           D
Sbjct: 170 D 170


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 166/414 (40%), Positives = 252/414 (60%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKV-EPDKFTFASVIYGCARLGALNH 59
           M ++ V SW+++I        + + LR   +M +      ++    SV+  C  LGAL+ 
Sbjct: 149 MNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDL 208

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              VH  ++     LN I+  +LI+MY KCG +     +F  + + +   ++ MISG+A+
Sbjct: 209 GRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSYSVMISGLAM 268

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +   IFT+M    + PD I ++G+L ACSH GLV+EG + F+ M+  + I+P ++
Sbjct: 269 HGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQ 328

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HYG MVDL+GRAG I+EA  LI SM MEP+ V+WR+LLSA +    L+ GE+A   + +L
Sbjct: 329 HYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKL 388

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                 DYV+LSNMY   +RW+     R  M  KG+ +  G S +E+   +H+F + D  
Sbjct: 389 DSQKASDYVVLSNMYAQAQRWEDVARTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAG 448

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+++++ ++L  +  + K EG+ P T  VL DV EEEK+  L  HS+KLA+AY ++ TS
Sbjct: 449 HPQSESVYEMLYQMEWQLKFEGYXPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTS 508

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G+ +RI +NLR+C+DCH++ K+IS +  R I VRDR RFH F+ G CSC DYW
Sbjct: 509 QGSPVRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 562



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 120/255 (47%), Gaps = 36/255 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +     +N+M+ G V++   +EAL  ++EM    V+PD FT+ +++  CARL A+   
Sbjct: 48  MDEPGSFZFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEG 107

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  I++  +E +  +  +LI MY KCG+I +   VF+ +    V+ W+A+I+  A  
Sbjct: 108 MQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASL 167

Query: 121 GLAADASAIFTKM--EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS----- 173
           G+ +D   +   M  E +    +SI  + +L+AC+H G ++ GR     +    S     
Sbjct: 168 GMWSDCLRLLGDMSNEGYWRAEESI-LVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVI 226

Query: 174 -----IQPQLE--------------------HYGAMVDLLGRAGHIEEAYGLITSMT--- 205
                I+  L+                     Y  M+  L   G+  E   + T M    
Sbjct: 227 VETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQG 286

Query: 206 MEPDVVVWRALLSAC 220
           +EPD +V+  +L+AC
Sbjct: 287 LEPDDIVYVGVLNAC 301



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 6/145 (4%)

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           N + + AL D     G +  A  +F  +       +N M+ G        +A   + +M 
Sbjct: 25  NLVATCALSDW----GSMDYACSIFRQMDEPGSFZFNTMMRGHVKDMNTEEALITYKEMA 80

Query: 135 MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194
              V PD+ T+  LL AC+    VEEG +   H+  +  ++  +    +++ + G+ G I
Sbjct: 81  ERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHIL-KLGLENDVFVQNSLISMYGKCGEI 139

Query: 195 EEAYGLITSMTMEPDVVVWRALLSA 219
                +   M  E  V  W AL++A
Sbjct: 140 GVCCAVFEQMN-ERSVASWSALITA 163


>gi|115438899|ref|NP_001043729.1| Os01g0651100 [Oryza sativa Japonica Group]
 gi|113533260|dbj|BAF05643.1| Os01g0651100, partial [Oryza sativa Japonica Group]
          Length = 503

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 167/413 (40%), Positives = 241/413 (58%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++VVSW+++I G+        A+  FR  L   V  + FT + ++  CA        
Sbjct: 92  MPKRNVVSWSALICGYADAGMHSAAMEIFRLALEEAVPVNDFTVSCILRVCAAATLFELG 151

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   I+  +  +  + ++L+ +YSKCG ++ A +VF      ++ +WNA ++  A H
Sbjct: 152 AQVHARSIKTALNASPFVGSSLVSLYSKCGLVECAYQVFGEAPERNLGIWNAGLNASAQH 211

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A   F  M+     P+SITFL L+TACSH GLV+EG++YF  M+  Y I+PQ EH
Sbjct: 212 GHTTAAFQRFMDMQNAGFRPNSITFLSLITACSHAGLVDEGKRYFSLMK-EYRIEPQAEH 270

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y AMVDLLGR G I EA GLI SM MEP   VW ALL ACR FK  +   +A   +    
Sbjct: 271 YAAMVDLLGRVGRISEALGLIESMPMEPPEYVWGALLMACRMFKDADAAAIAAKRLFETG 330

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G ++LLS+ Y    R   A   R+ M+  GVRK  G SWLE AG +H F +  R H
Sbjct: 331 SRSSGAHMLLSSTYAAAGRHMDAALARKAMRDAGVRKETGLSWLEAAGEVHTFVSNCRRH 390

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P +  I  +L  + ++ ++ G++  T  V+ DV ++EK+  + +HSE+LA+  G+L    
Sbjct: 391 PRSNEIYNVLEKVGEKMEAAGYVADTSAVVKDVDKDEKQATMRYHSERLAIGLGLLIVPE 450

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH+ +K +S+   R++I+RD  RFHRFE G+CSCGD+W
Sbjct: 451 GVPIRVMKNLRVCDDCHNAVKYLSKCTGRIVILRDNRRFHRFEDGVCSCGDFW 503



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 14/212 (6%)

Query: 16  FVRNARFDEALRFFREMLSSKVE------PDKFTFASVIYGCARLGALNHAYWVHNLIIE 69
           F +N     A   FR ML++ V       P      +     +R     HA  +H L  +
Sbjct: 2   FSQNGLPAAAFDAFRRMLAAGVPATDRNIPSAAKAVAAAEDSSRPPLAPHA--LHGLSAK 59

Query: 70  KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAI 129
                +  + ++++DMY+KCG +  A+ +FD + + +V  W+A+I G A  G+ + A  I
Sbjct: 60  TPFAGDVFVGSSVLDMYAKCGHLADARRLFDEMPKRNVVSWSALICGYADAGMHSAAMEI 119

Query: 130 FTKMEMFNVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLEHYGAMVDL 187
           F ++ +   +P +  T   +L  C+   L E G +   H RS + ++        ++V L
Sbjct: 120 F-RLALEEAVPVNDFTVSCILRVCAAATLFELGAQV--HARSIKTALNASPFVGSSLVSL 176

Query: 188 LGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             + G +E AY +      E ++ +W A L+A
Sbjct: 177 YSKCGLVECAYQVFGEAP-ERNLGIWNAGLNA 207


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 159/406 (39%), Positives = 252/406 (62%), Gaps = 3/406 (0%)

Query: 8   SWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLI 67
           SWN+ I G ++N + + AL    +M  S ++P++ T  S + GC  L +L     +H  +
Sbjct: 279 SWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYV 338

Query: 68  IEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADAS 127
                  +  ++ AL+ +Y+KCG +++++ VF+T+ R DV  WN MI   ++HG   ++ 
Sbjct: 339 FRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVVAWNTMIMANSMHGKGGESL 398

Query: 128 AIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDL 187
            +F KM    V P+S+TF+G+L+ CSH  L +EG   F+ M S +SI P  +HY  MVD+
Sbjct: 399 ILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGLLVFNSMSSEHSITPDADHYSCMVDV 458

Query: 188 LGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDY 244
           L RAG +EEAY  I  M +EP    W ALL ACR +K +ELG +A   +  I     G+Y
Sbjct: 459 LSRAGRLEEAYDFIRKMPIEPTAAAWGALLGACRVYKNVELGTLAASQLFEIEPDNAGNY 518

Query: 245 VLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAID 304
           VLLSN+    K+W  A  +R++M+ KG+ K+ G+SW+++   ++ F  GD+S+ +   I 
Sbjct: 519 VLLSNILVTAKKWVEASEIRKMMRDKGLAKTPGRSWVQVKNKVYSFVTGDKSNEQKDMIY 578

Query: 305 KILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIRIS 364
           + L  + ++ + +G+ P T+ VL +V +E++E  L  HSE+LA+A+GIL +S  T +R+ 
Sbjct: 579 RFLDEIDEKMRLDGYQPNTDFVLQNVDQEQREETLCSHSERLAVAFGILNSSGKTTVRVF 638

Query: 365 KNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           KNLRIC DCH+ IK+I++++   IIVRD +RFH F  G C+C D+W
Sbjct: 639 KNLRICGDCHNAIKLIAKIVGMQIIVRDSLRFHHFRDGYCTCNDFW 684



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 110/229 (48%), Gaps = 4/229 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+ D+ +W  +I G  ++    +A+  +  +LS  V PDKF   SV   CA  G L  A
Sbjct: 37  IPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVAKACAASGDLVVA 96

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+  I+     + +L  ALIDM+ KC  +  A+ VFD +   DV  W +M       
Sbjct: 97  KKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSWTSMTYCYVNC 156

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G+      +F +M +  +  +S+T   +L AC+    ++ GR+    +  R  ++  +  
Sbjct: 157 GMCRQGILLFREMGLNGIRANSLTVSSILPACAD--YIKLGREVHGFIL-RNEMEGNVYV 213

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG 229
             A+V++   +  +++A  +  SM    D+V W  +L+A    K  E G
Sbjct: 214 SSALVNMYASSLGLKQARLVFDSM-YHRDIVSWNVMLTAYFLNKEYERG 261



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 110/251 (43%), Gaps = 39/251 (15%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KDVVSW SM   +V      + +  FREM  + +  +  T +S++  CA    L     V
Sbjct: 141 KDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADYIKLGRE--V 198

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDV---------------- 107
           H  I+  ++E N  +S+AL++MY+    ++ A+ VFD++   D+                
Sbjct: 199 HGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEY 258

Query: 108 -------------------SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGL 148
                              + WNA ISG   +G    A  I  KM+   + P+ IT +  
Sbjct: 259 ERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSA 318

Query: 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
           L  C++   +  G++   ++   + I+  +    A+V L  + G +E +  +  +M  + 
Sbjct: 319 LPGCTNLESLRGGKEIHGYVFRHWFIE-DVTITTALVLLYAKCGDLELSRHVFNTMPRK- 376

Query: 209 DVVVWRALLSA 219
           DVV W  ++ A
Sbjct: 377 DVVAWNTMIMA 387



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 4/105 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KDVV+WN+MI     + +  E+L  F +ML S VEP+  TF  V+ GC+     +  
Sbjct: 373 MPRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEG 432

Query: 61  YWVHN-LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR 104
             V N +  E  I  +    + ++D+ S+ G+++   E +D +++
Sbjct: 433 LLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLE---EAYDFIRK 474



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 2/138 (1%)

Query: 79  SAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNV 138
           S  LI      G ++ A  +FD +   D+  W  +ISG   HG    A  I++ +   NV
Sbjct: 14  SIKLIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNV 73

Query: 139 LPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAY 198
            PD    L +  AC+  G +   +K  D    ++     L    A++D+ G+   +  A 
Sbjct: 74  RPDKFVLLSVAKACAASGDLVVAKKIHDDA-IQFGFNKDLVLGNALIDMFGKCKFVNGAR 132

Query: 199 GLITSMTMEPDVVVWRAL 216
            +   M ++ DVV W ++
Sbjct: 133 CVFDDMVVK-DVVSWTSM 149


>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
 gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
          Length = 504

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 163/415 (39%), Positives = 248/415 (59%), Gaps = 6/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++V SWNS+I GFV+  +  EAL  FR M    +     T  +++  CAR+ AL   
Sbjct: 91  MPERNVASWNSLISGFVKEDKLGEALDVFRRMQREGMGFSWVTLTTILPICARVTALLSG 150

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I++     + ++  +L+DMY KCG +   + +FD ++  D++ WN M++G AI+
Sbjct: 151 KEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVDYGRRLFDGMRSKDLTSWNTMLTGYAIN 210

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F +M    + PD +TF+ LL+ CSH GL E+G+K F  M   + + P LEH
Sbjct: 211 GYMRVAMDLFNEMASCGIRPDDVTFIALLSGCSHAGLTEDGQKLFHRMEMDFGVSPSLEH 270

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVN----I 236
           Y  +VD+LGRAG I+ A  ++ +M M+    +W +LL++CR    + L E AI N    +
Sbjct: 271 YACLVDMLGRAGRIDAALVVVKNMPMKTSGSIWGSLLNSCRLHNEVPLAE-AIANRLFEL 329

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR- 295
                G+YV+LSN+Y     WD+   VRE+M+ + +RK  G SW+++   IH F AG   
Sbjct: 330 EPYNPGNYVMLSNIYANAGMWDSVNMVREMMQTRRIRKEAGCSWIQVKNKIHSFVAGGGF 389

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
               +    KI   L +  +  G++P T++VL DV+EE K   +  HSE+LA  + ++ T
Sbjct: 390 EFRNSDEYKKIWNKLREAMEEFGYIPNTDVVLHDVNEETKAMWVCGHSERLATVFSLIHT 449

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + G  IRI+KNLR+C DCHSWIK++SR+  RVI++RD  RFH F+ G CSC DYW
Sbjct: 450 AAGMPIRITKNLRVCVDCHSWIKIVSRVTGRVIVLRDTNRFHHFKEGACSCNDYW 504



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 104/244 (42%), Gaps = 43/244 (17%)

Query: 15  GFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIEL 74
           G+ +N    EAL  + EML + +EP  F F++ +  CA L  L     VH  +++     
Sbjct: 4   GYSKNGFLREALLVYVEMLWNCMEPGNFAFSTALKACADLRELWVGRGVHAQVVKSSEGP 63

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           + +++  L+ +Y++C       +VFD +   +V+ WN++ISG        +A  +F +M+
Sbjct: 64  DQVVNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQ 123

Query: 135 ----------MFNVL-------------------------PDSITFLGLLTACSHCGLVE 159
                     +  +L                         PD +    L+     CG+V+
Sbjct: 124 REGMGFSWVTLTTILPICARVTALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVD 183

Query: 160 EGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRAL 216
            GR+ FD MRS+      L  +  M+      G++  A  L   M    + PD V + AL
Sbjct: 184 YGRRLFDGMRSK-----DLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTFIAL 238

Query: 217 LSAC 220
           LS C
Sbjct: 239 LSGC 242


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 167/414 (40%), Positives = 252/414 (60%), Gaps = 5/414 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  K+ VSWN++I GF R    +EAL  F +M        +FT+++++   +  G+L   
Sbjct: 256 LESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQG 315

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H  +++   +L   +   L+ MY+K G I  AK+VFD + + DV   N+M+ G A H
Sbjct: 316 KWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQH 375

Query: 121 GLAADASAIFTKMEMF-NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           GL  +A  +F +M ++  + P+ ITFL +LTACSH GL++EG  YF+ M+ +Y ++P+L 
Sbjct: 376 GLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMK-KYGLEPKLS 434

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           HY  +VDL GRAG +++A   I  M +EP+  +W ALL A +  K  E+G  A   ++ +
Sbjct: 435 HYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLEL 494

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G + LLSN+Y    +W     VR+ MK  G++K    SW+E+   +H F A D S
Sbjct: 495 DPFYPGAHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSANDIS 554

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+   + ++  +L Q+ K  G++P T  V + V ++EKE NL +HSEKLALA+ +L T 
Sbjct: 555 HPQKNKVYEMWENLNQKIKEIGYVPDTSHVHVFVDQQEKELNLQYHSEKLALAFALLNTK 614

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PG+ IRI KN+R+C DCHS IK +S +++R IIVRD  RFH F  G CSC DYW
Sbjct: 615 PGSVIRIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFRDGSCSCRDYW 668



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 91/168 (54%), Gaps = 3/168 (1%)

Query: 4   KDVVSWNSMIGGFVRN---ARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           KDVV+W SMI G+ ++   +    AL  F EM+   + P++F  +S++  C  LG+    
Sbjct: 155 KDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDG 214

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H    +   + N  + ++L+DMY++CG+++ ++ VFD ++  +   WNA+ISG A  
Sbjct: 215 KQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFARK 274

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM 168
           G   +A  +F KM+         T+  LL + S  G +E+G+    HM
Sbjct: 275 GEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHM 322



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 97/200 (48%), Gaps = 8/200 (4%)

Query: 37  VEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAK 96
           +EPD+  +  ++  C  LG L     VH  ++  K   + ++  +++ MY+KCG +++A+
Sbjct: 87  LEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIAR 146

Query: 97  EVFDTVQRNDVSVWNAMISGVAIHGLAADASA---IFTKMEMFNVLPDSITFLGLLTACS 153
           +VFD +   DV  W +MI+G +  G A+ A+    +F +M    + P+      L+  C 
Sbjct: 147 QVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCG 206

Query: 154 HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVW 213
             G   +G++       +Y  Q  +    ++VD+  R G + E+  L+       + V W
Sbjct: 207 FLGSCVDGKQIHGCCW-KYGFQENVFVGSSLVDMYARCGELRESR-LVFDELESKNEVSW 264

Query: 214 RALLSACRTFKRLELGEVAI 233
            AL+S    F R   GE A+
Sbjct: 265 NALISG---FARKGEGEEAL 281


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 165/408 (40%), Positives = 249/408 (61%), Gaps = 5/408 (1%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           V+W S I G V+N R + AL  FREM+   + P+ FTF+S+++ C+ L  L     +H +
Sbjct: 270 VTWTSFIVGLVQNGREEIALSMFREMIRCSISPNHFTFSSILHACSSLAMLEAGEQIHAV 329

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
            ++  ++ N  + AALI +Y KCG ++ A+ VF+++   DV   N MI   A +G   +A
Sbjct: 330 TVKLGVDGNKYVDAALIHLYGKCGNVEKARSVFESLTELDVVSINTMIYAYAQNGFGHEA 389

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186
             +F +M+     P+ +TF+ +L AC++ GLVEEG + F  +R+ +SI+   +HY  M+D
Sbjct: 390 LELFERMKKLGHKPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMID 449

Query: 187 LLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE---VAIVNISRLMGGD 243
           LLGRA   EEA  LI      PDV+ WR LL+AC+    +E+ E     +++ +   GG 
Sbjct: 450 LLGRAKRFEEAAMLIEE-GKNPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQAPRDGGT 508

Query: 244 YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAI 303
           ++LL+N+Y    +WD    ++   +   ++K+   SW+++   +H F AGD SHP A  I
Sbjct: 509 HILLTNIYASAGKWDNVIEMKSAGRDLRLKKTPAMSWVDIDREVHTFMAGDLSHPRAHEI 568

Query: 304 DKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT-SPGTEIR 362
            ++L  LI++  + G+ P T+ VL D+ EE+K   LY+HSEKLA+A+ + KT    T IR
Sbjct: 569 SEMLHELIEKVITLGYNPDTKFVLQDLEEEKKISALYYHSEKLAIAFALWKTCGKNTAIR 628

Query: 363 ISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           I KNLR+C DCHSWIK +S L  R II RD  RFH F+GG+CSC DYW
Sbjct: 629 IFKNLRVCGDCHSWIKFVSLLTGRDIIARDAKRFHHFKGGICSCKDYW 676



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 117/217 (53%), Gaps = 2/217 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           DKDVV + ++I G+ +     EAL  F +M+ S+++P+++T ASV+  C  LG L +   
Sbjct: 165 DKDVVLFTALIVGYNQRGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKL 224

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H L+++  +E       +L+ MYSKC  ++ + +VF+++       W + I G+  +G 
Sbjct: 225 IHGLVVKSGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGR 284

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
              A ++F +M   ++ P+  TF  +L ACS   ++E G +    +  +  +        
Sbjct: 285 EEIALSMFREMIRCSISPNHFTFSSILHACSSLAMLEAGEQ-IHAVTVKLGVDGNKYVDA 343

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A++ L G+ G++E+A  +  S+T E DVV    ++ A
Sbjct: 344 ALIHLYGKCGNVEKARSVFESLT-ELDVVSINTMIYA 379



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 106/218 (48%), Gaps = 3/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++ +V+WNSMI   V   +  EA+  +  ML   V PD +TF+++    + +G     
Sbjct: 61  MPNRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREG 120

Query: 61  YWVHNLIIEKKIEL-NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              H L +    E+ +  ++  ++DMY+K GK++ A+ VFD V   DV ++ A+I G   
Sbjct: 121 QKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQ 180

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            GL  +A  +F  M    + P+  T   +L +C + G +  G K    +  +  ++  + 
Sbjct: 181 RGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNG-KLIHGLVVKSGLESVVA 239

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              +++ +  +   +E++  +  S+      V W + +
Sbjct: 240 SQTSLLTMYSKCNMVEDSIKVFNSLAYASH-VTWTSFI 276



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
           LID Y KC  I  A+++FD +    +  WN+MIS     G   +A  ++  M    VLPD
Sbjct: 41  LIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLPD 100

Query: 142 SITFLGLLTACSHCGLVEEGRKYFD-HMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL 200
           + TF  +  A S  G+  EG+K     +   + +       G +VD+  + G +++A   
Sbjct: 101 AYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATG-IVDMYAKFGKMKDAR-F 158

Query: 201 ITSMTMEPDVVVWRALL 217
           +    ++ DVV++ AL+
Sbjct: 159 VFDRVLDKDVVLFTALI 175



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 1/134 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + + DVVS N+MI  + +N    EAL  F  M     +P+  TF S++  C   G +   
Sbjct: 365 LTELDVVSINTMIYAYAQNGFGHEALELFERMKKLGHKPNVVTFISILLACNNAGLVEEG 424

Query: 61  YWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             + +LI     IEL       +ID+  +  + + A  + +  +  DV  W  +++   I
Sbjct: 425 CQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEAAMLIEEGKNPDVIQWRTLLNACKI 484

Query: 120 HGLAADASAIFTKM 133
           HG    A     KM
Sbjct: 485 HGEVEMAEKFMKKM 498


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 173/414 (41%), Positives = 251/414 (60%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           M D D V WN+MI  + ++ R  +AL  +R M  ++ + P + TF +VI  CA L AL  
Sbjct: 257 MHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQ 316

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  +     + N ++S AL+ MY KCG +  A +VF +++  D   WN +IS  A 
Sbjct: 317 GRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAY 376

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG +  A  ++ +M++  V P  +TF+GLL+ACSH GLV +G  YF  M+  + I+P + 
Sbjct: 377 HGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVP 436

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
           H+G ++DLLGR G + EA  ++ SM ++ + V W +LL AC+T   L+ G  A   +V+ 
Sbjct: 437 HFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDR 496

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G YVLLSN+Y    RW   E +R+IM  +GV+KS GKSW+E+  V+H+F +GD S
Sbjct: 497 VPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDSS 556

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+ + I   LG +++  K  G++P T  V  D+ EEEKE  L  HSEKLA+ YG +   
Sbjct: 557 HPQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKEDLLVCHSEKLAIVYGNMVVP 616

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             + +RI KNLR+C DCH+  K +SR+  R I+VRD  RFH FE G CSC DYW
Sbjct: 617 GKSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFHLFENGSCSCRDYW 670



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 36/253 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA--LN 58
           MP ++V +W   +  F  N    EAL FFR M  S   PD+ TF+ ++   A++GA  ++
Sbjct: 123 MPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAID 182

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVS--------- 108
               +H       +  N ++  A+I MY KCG++  A+  F+ +Q +N V+         
Sbjct: 183 QGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYK 242

Query: 109 ---------------------VWNAMISGVAIHGLAADASAIFTKM-EMFNVLPDSITFL 146
                                 WNAMI+  A HG    A  ++  M +  ++ P   TF+
Sbjct: 243 LDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFV 302

Query: 147 GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM 206
            ++  C+    +++GR     +R+  +    L    A+V + G+ G ++EA  +  SM +
Sbjct: 303 TVIDVCAELSALKQGRAIHARVRAT-NFDANLLVSNALVHMYGKCGCLDEALDVFHSMKL 361

Query: 207 EPDVVVWRALLSA 219
           + D + W  ++S+
Sbjct: 362 K-DEISWNTIISS 373



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 95/190 (50%), Gaps = 8/190 (4%)

Query: 34  SSKVEPDKFTFASVIYGCARLGALNHAYWVHN--LIIEKKIELNFILSAALIDMYSKCGK 91
           S ++E D   +A++I  C    A++ A  +H+  L +         L+  LI+MY KCG+
Sbjct: 53  SRELELDPVGYAALIRRCGAANAISAARRLHSHILSLPHSNSQPPFLANLLIEMYGKCGR 112

Query: 92  IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL-- 149
           +  A+E+F+++   +V  W   ++  + +G  ++A   F +M      PD +TF  +L  
Sbjct: 113 LPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAA 172

Query: 150 TACSHCGLVEEGRKYFDHMRSRYS-IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
            A      +++GR+   H  +R S + P +    A++ + G+ G +++A      +  + 
Sbjct: 173 IAQMGAAAIDQGREI--HRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWK- 229

Query: 209 DVVVWRALLS 218
           + V W A+++
Sbjct: 230 NSVTWNAMMT 239


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 166/414 (40%), Positives = 246/414 (59%), Gaps = 15/414 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           M  ++ ++WN+M+G ++++   ++ L+ +  MLS K V PD  T+ ++  GCA +GA   
Sbjct: 463 MATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKL 522

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +    ++  + LN  ++ A I MYSKCG+I  A+++FD +   DV  WNAMI+G + 
Sbjct: 523 GDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQ 582

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG+   A+  F  M      PD I+++ +L+ CSH GLV+EG+ YFD M   + I P LE
Sbjct: 583 HGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLE 642

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           H+  MVDLLGRAGH+ EA  LI  M M+P   VW ALLSAC+     EL E+A  ++  L
Sbjct: 643 HFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFEL 702

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G Y+LL+ +Y    + D +  VR++M+ KG++K+ G SW+E+   +H FKA D S
Sbjct: 703 DSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVS 762

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+  AI   +  L+++    G++             E   +  HHSEKLA+A+GI+   
Sbjct: 763 HPQVIAIRNKMDELMEKIAHLGYV-----------RTESPRSEIHHSEKLAVAFGIMSLP 811

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
               I I KNLRIC DCH+ IK+IS +  R  ++RD +RFH F+ G CSCGDYW
Sbjct: 812 AWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 114/231 (49%), Gaps = 26/231 (11%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++DVVSWN MI    ++ R  EAL    EM    V  D  T+ S +  CARL +L   
Sbjct: 230 MAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWG 289

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
             +H  +I    +++  +++ALI++Y+KCG  + AK VF+++Q RN VS W  +I G   
Sbjct: 290 KQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVS-WTVLIGGSLQ 348

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-----RSRYSI 174
           +   + +  +F +M    +  D      L++ C            F+ M     R  +S+
Sbjct: 349 YECFSKSVELFNQMRAELMAIDQFALATLISGC------------FNRMDLCLGRQLHSL 396

Query: 175 QPQLEHYGAMV------DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +  H  A+V       L  + G ++ A  + +SM+ E D+V W ++++A
Sbjct: 397 CLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMS-ERDIVSWTSMITA 446



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 110/251 (43%), Gaps = 34/251 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + D++ VSW  +IGG ++   F +++  F +M +  +  D+F  A++I GC     L   
Sbjct: 331 LQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLG 390

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS------------ 108
             +H+L ++       ++S +LI +Y+KCG +Q A+ VF ++   D+             
Sbjct: 391 RQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQI 450

Query: 109 -------------------VWNAMISGVAIHGLAADASAIFTKM-EMFNVLPDSITFLGL 148
                               WNAM+     HG   D   +++ M    +V PD +T++ L
Sbjct: 451 GNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTL 510

Query: 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
              C+  G  + G +   H   +  +   +    A + +  + G I EA  L   +  + 
Sbjct: 511 FRGCADIGANKLGDQIIGHT-VKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGK- 568

Query: 209 DVVVWRALLSA 219
           DVV W A+++ 
Sbjct: 569 DVVSWNAMITG 579



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 110/251 (43%), Gaps = 38/251 (15%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNH 59
           MP +DV SWN+++ G+ +  RF + L  F  M  S    P+ FTF  V+  C  LG    
Sbjct: 97  MPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCREL 156

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR--------------- 104
           A  +  L  +     +  +  AL+DM+ +CG +  A  +F  ++R               
Sbjct: 157 APQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAK 216

Query: 105 ----------------NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGL 148
                            DV  WN MI+ ++  G   +A  +  +M    V  DS T+   
Sbjct: 217 LYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSS 276

Query: 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY--GAMVDLLGRAGHIEEAYGLITSMTM 206
           LTAC+    +  G++   H +   S+ PQ++ Y   A+++L  + G  +EA  +  S+  
Sbjct: 277 LTACARLFSLGWGKQL--HAKVIRSL-PQIDPYVASALIELYAKCGSFKEAKRVFNSL-Q 332

Query: 207 EPDVVVWRALL 217
           + + V W  L+
Sbjct: 333 DRNSVSWTVLI 343



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 5/149 (3%)

Query: 73  ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTK 132
           E N I    +++ Y+K G +  A+E+FD + R DV+ WN ++SG        D    F  
Sbjct: 68  EPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVS 127

Query: 133 MEMF-NVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQLEHYGAMVDLLGR 190
           M    + LP++ TF  ++ +C   G  E   +      +  +   P +E   A+VD+  R
Sbjct: 128 MHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVE--TALVDMFVR 185

Query: 191 AGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            G+++ A  L + +   P +    ++L+ 
Sbjct: 186 CGYVDFASRLFSQIE-RPTIFCRNSMLAG 213


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 167/414 (40%), Positives = 254/414 (61%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  K+ VSWN++I G+       +A   FRE L ++V   + TF+S +  CA L +++  
Sbjct: 409 LSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLG 468

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH L I+        +S +LIDMY+KCG I+ A+ VF+ ++  DV+ WNA+ISG + H
Sbjct: 469 VQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTH 528

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL   A  I   M+  +  P+ +TFLG+L+ CS+ GL+++G++ F+ M   + I+P LEH
Sbjct: 529 GLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEH 588

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MV LLGR+G +++A  LI  +  EP V++WRA+LSA       E    +   I ++ 
Sbjct: 589 YTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKIN 648

Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             D   YVL+SNMY   K+W    ++R+ MK+ GV+K  G SW+E  G +H F  G   H
Sbjct: 649 PKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVGLSDH 708

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK-TS 356
           P+ + I+ +L  L  +    G++P    VL+D+ +EEK+  L+ HSE+LALAYG+++  S
Sbjct: 709 PDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPS 768

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
               I I KNLRIC DCHS +K+IS +++R +++RD  RFH F  G+CSCGD+W
Sbjct: 769 SRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDHW 822



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP  DVV W+ MI  F +N   +EA+  F  M  + V P++FT +S++ GCA        
Sbjct: 308 MPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLG 367

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF-DTVQRNDVSVWNAMISGVAI 119
             +H L+++   +L+  +S ALID+Y+KC K+  A ++F +   +N+VS WN +I G   
Sbjct: 368 EQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVS-WNTVIVGYEN 426

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            G    A ++F +     V    +TF   L AC+    ++ G +    +  + +   ++ 
Sbjct: 427 LGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHG-LAIKTNNAKKVA 485

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRT 222
              +++D+  + G I+ A  +   M    DV  W AL+S   T
Sbjct: 486 VSNSLIDMYAKCGDIKFAQSVFNEME-TIDVASWNALISGYST 527



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 78/150 (52%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD+V W  ++  +V N  F+++L+    M  +   P+ +TF + +     LGA + A  V
Sbjct: 210 KDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGV 269

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  I++    L+  +   L+ +Y++ G +  A +VF+ + +NDV  W+ MI+    +G  
Sbjct: 270 HGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFC 329

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACS 153
            +A  +F +M    V+P+  T   +L  C+
Sbjct: 330 NEAVDLFIRMREAFVVPNEFTLSSILNGCA 359



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 102/219 (46%), Gaps = 8/219 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++ VS+ ++  G+          R  RE    ++ P  FT  S +     L      
Sbjct: 110 MPERNNVSFVTLAQGYACQDPIGLYSRLHRE--GHELNPHVFT--SFLKLFVSLDKAEIC 165

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            W+H+ I++   + N  + AALI+ YS CG +  A+ VF+ +   D+ VW  ++S    +
Sbjct: 166 PWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVEN 225

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
           G   D+  + + M M   +P++ TF   L A    G  +  +      +++ Y + P++ 
Sbjct: 226 GYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVG 285

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
               ++ L  + G + +A+ +   M  + DVV W  +++
Sbjct: 286 V--GLLQLYTQLGDMSDAFKVFNEMP-KNDVVPWSFMIA 321


>gi|115468046|ref|NP_001057622.1| Os06g0472300 [Oryza sativa Japonica Group]
 gi|113595662|dbj|BAF19536.1| Os06g0472300, partial [Oryza sativa Japonica Group]
          Length = 397

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 170/399 (42%), Positives = 239/399 (59%), Gaps = 5/399 (1%)

Query: 15  GFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIEL 74
           GF ++     A+  F  M  +    ++ T  SV+  C  L  L     VH  ++  K + 
Sbjct: 1   GFAQSGDGVGAIELFMRMKEAGFLSNQGTLTSVLRACTGLVTLEVGRQVHAHVL--KYDK 58

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           + IL  AL+DMY KCG +Q A  +F  + + DV  W+ MISG+A +G + +A  +F  M+
Sbjct: 59  DLILHNALLDMYCKCGSLQDADALFGRMPQRDVISWSTMISGLAQNGRSIEALKVFDMMK 118

Query: 135 MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194
                P+ IT +G+L ACSH GLVE+G  YF  M   + IQP+ EH   MVDLLGRAG +
Sbjct: 119 SEGPRPNHITMVGVLFACSHAGLVEDGWYYFSSMEKLFGIQPEREHCNCMVDLLGRAGKL 178

Query: 195 EEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDY---VLLSNMY 251
           ++A   I  M  +PD V+WR LL ACR  K  +L   A   I RL   D    +LLSN Y
Sbjct: 179 DDAVKFIHEMNFQPDSVIWRTLLGACRMHKNADLAAYAAKEILRLEPDDQGARILLSNTY 238

Query: 252 CYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLI 311
             L++W  AE   ++M+ +GV+K  G+SW+EL   +H F AGD SHP +++I + L  L 
Sbjct: 239 ADLRQWADAEKSWKMMRDRGVKKDPGRSWIELGKQVHVFIAGDLSHPCSESIIQELSRLF 298

Query: 312 QRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIRISKNLRICH 371
            R  + G+ P TE VL D++ E+KE  L +HSEKLA+A+G +    G  IRI KNLRIC 
Sbjct: 299 SRVTNLGYTPQTEFVLQDLATEQKEDLLKYHSEKLAIAFGTMNAMEGKPIRIMKNLRICG 358

Query: 372 DCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           DCH++ K++S+   +VII+RD +RFH F+ G+CSC DYW
Sbjct: 359 DCHAFAKLVSKSEGKVIIIRDPVRFHHFQDGVCSCNDYW 397



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 6/144 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DV+SW++MI G  +N R  EAL+ F  M S    P+  T   V++ C+  G +   
Sbjct: 86  MPQRDVISWSTMISGLAQNGRSIEALKVFDMMKSEGPRPNHITMVGVLFACSHAGLVEDG 145

Query: 61  YWVHNLIIEK--KIELNFILSAALIDMYSKCGKIQMA-KEVFDTVQRNDVSVWNAMISGV 117
            W +   +EK   I+        ++D+  + GK+  A K + +   + D  +W  ++   
Sbjct: 146 -WYYFSSMEKLFGIQPEREHCNCMVDLLGRAGKLDDAVKFIHEMNFQPDSVIWRTLLGAC 204

Query: 118 AIHGLAADASAIFTKMEMFNVLPD 141
            +H   AD +A   K E+  + PD
Sbjct: 205 RMHK-NADLAAYAAK-EILRLEPD 226


>gi|449458777|ref|XP_004147123.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71420-like [Cucumis sativus]
 gi|449503335|ref|XP_004161951.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71420-like [Cucumis sativus]
          Length = 629

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 168/415 (40%), Positives = 250/415 (60%), Gaps = 12/415 (2%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++D+V W S++  F+ +    + L  F +     + PD  TF+ V+  CA      HA  
Sbjct: 220 NRDIVLWTSIMAAFIDHDP-GKTLSLFCQFRQEGLTPDGHTFSIVLKACAGFLTEKHAST 278

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            H+L+I+   E + +L+ ALI  Y +CG I  +K+VF+ ++ +D+  WN M+   A+HG 
Sbjct: 279 YHSLLIKSMSEDHTVLNNALIHAYGRCGSISSSKKVFNQMKHHDLVSWNTMMKAYALHGQ 338

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A  A  +FTKM   NV PD+ TF+ LL+ACSH GLVEEG   F+ + + Y I  +L+HY 
Sbjct: 339 AEIALQLFTKM---NVPPDATTFVSLLSACSHAGLVEEGTSLFNSI-TNYGIVCRLDHYA 394

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            MVD+LGR+G ++EA+  I++M +EPD VVW + L +CR +    L ++A   +  L   
Sbjct: 395 CMVDILGRSGQVQEAHDFISNMPIEPDFVVWSSFLGSCRKYGATGLAKLASYKLKELDPS 454

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           +   YV +SN+YC+   +  A+ +R  M    V+K  G S +E+   +H+F +G R HP+
Sbjct: 455 NSLAYVQMSNLYCFNGSFYEADLIRMEMTGSRVKKEPGLSRVEIENQVHEFASGGRCHPQ 514

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP-- 357
            + I   L  LI R K  G++P T L L DV +E+KE  LYHHSEKLAL + ++      
Sbjct: 515 REVICNELEKLIGRLKEIGYVPETSLALHDVEQEQKEQQLYHHSEKLALVFSVMNDYNLG 574

Query: 358 --GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
                IRI KN+RIC DCH+++K+ SRLL++ I++RD  RFH F  GLCSC DYW
Sbjct: 575 RVNNPIRIMKNIRICVDCHNFMKLASRLLQKEIVIRDSNRFHHFMAGLCSCNDYW 629



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 17/234 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++ VSW  +I GF +    DE    F  ML     P++FT +S++            
Sbjct: 1   MPRRNYVSWTVLITGFSQYGHVDECFLIFSRMLVDH-RPNEFTVSSLLTSFGEHDG-ERG 58

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKC----GKIQMAKE-----VFDTVQRNDVSVWN 111
             +H   ++  ++    ++ ALI MYSK     G  + +K+     +F +++   +  WN
Sbjct: 59  RQIHGFALKISLDAFVYVANALITMYSKICSEDGAFKDSKDDDAWTMFKSMENPSLITWN 118

Query: 112 AMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKY-FDHMRS 170
           +MI+G     L   A  +F +M    +  D  T +  L++ S C   E GR+  F H   
Sbjct: 119 SMIAGFCFRKLGHQAIYLFMQMNRHGIGFDRATLVSTLSSTSFCNRDEFGRRLSFCHQIH 178

Query: 171 RYSIQ----PQLEHYGAMVDLLGR-AGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +++     ++E   A+V       G I ++Y L        D+V+W ++++A
Sbjct: 179 CQALKTAFISEVEIITALVKTYAELGGDIADSYRLFVEAGYNRDIVLWTSIMAA 232



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 7/143 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M   D+VSWN+M+  +  + + + AL+ F +M    V PD  TF S++  C+  G +   
Sbjct: 318 MKHHDLVSWNTMMKAYALHGQAEIALQLFTKM---NVPPDATTFVSLLSACSHAGLVEEG 374

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGV-- 117
             + N I    I       A ++D+  + G++Q A +    +    D  VW++ +     
Sbjct: 375 TSLFNSITNYGIVCRLDHYACMVDILGRSGQVQEAHDFISNMPIEPDFVVWSSFLGSCRK 434

Query: 118 -AIHGLAADASAIFTKMEMFNVL 139
               GLA  AS    +++  N L
Sbjct: 435 YGATGLAKLASYKLKELDPSNSL 457


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 168/411 (40%), Positives = 253/411 (61%), Gaps = 4/411 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D V WNSMI  + +N R  EAL   R+M ++ + P   T  S +   A   AL     +
Sbjct: 227 RDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGREL 286

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H     +   L   L  +L+DMY+K G +Q+A+ +F+ + + ++  WNAMI G  +HG A
Sbjct: 287 HGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHA 346

Query: 124 ADASAIFTKMEM-FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
            +A A+F KM+    V PD+ITF+G+L+AC+H G+VEE +++F  M + YSI+P ++HY 
Sbjct: 347 DEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYT 406

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM-- 240
            ++D+LG  G  EEAY LI  M++EPD  +W ALL+ C+  K +ELGE+A+  +  L   
Sbjct: 407 CVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIHKNVELGELALQKLIELEPE 466

Query: 241 -GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             G+YV LSN+Y    +W+ A  VR++M  +G++K    SW+EL G  H F  GD SHP 
Sbjct: 467 DAGNYVHLSNIYAQSGKWEKAARVRKLMTNRGLKKILACSWIELKGKTHGFLVGDASHPR 526

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           +  I   L  L       G++P    V  +V ++EK   +  HSE+LA+A+G++ T PGT
Sbjct: 527 SDEIYGELERLEGLMSDAGYVPDIIPVFHNVDDDEKRNMVRSHSERLAIAFGLISTPPGT 586

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           ++ ++KNLR+C DCH  IK+IS++++R II+RD  R+H F  G CSC DYW
Sbjct: 587 KLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 111/218 (50%), Gaps = 4/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++V  WN +I  + R    + A+R +R M+   VEPD FT+  V+  CA L  L   
Sbjct: 123 MPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETG 182

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +   +   +  + A ++DMY+KCG +  A+ VFD +   D  VWN+MI+    +
Sbjct: 183 REVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQN 242

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
           G   +A A+   M    + P   T +  ++A +    +  GR+      R  + +Q +L+
Sbjct: 243 GRPMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDKLK 302

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              ++VD+  ++G ++ A  L   + M+ ++V W A++
Sbjct: 303 T--SLVDMYAKSGWVQVARVLFEQL-MKRELVSWNAMI 337



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 87/174 (50%), Gaps = 2/174 (1%)

Query: 46  SVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN 105
           S++  C   G+L     +H  ++   +  + +LS  L+D+Y+ CG++  A+ +FD + + 
Sbjct: 67  SILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPKR 126

Query: 106 DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYF 165
           +V +WN +I   A  G    A  ++  M    V PD+ T+  +L AC+    +E GR+  
Sbjct: 127 NVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREVH 186

Query: 166 DHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +      Q      G +VD+  + G +++A  +   + +  D VVW ++++A
Sbjct: 187 QRVSGTRWGQDVFVCAG-VVDMYAKCGCVDDARAVFDGIAVR-DAVVWNSMIAA 238


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 170/412 (41%), Positives = 244/412 (59%), Gaps = 6/412 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D VSWNSMI G++ N    +A+     M+      D FTFA+++  CA +  L     V
Sbjct: 503 RDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEV 562

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   I   +E + ++ +AL+DMYSKCG+I  A   F+ +   +V  WN+MISG A HG  
Sbjct: 563 HACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHG 622

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
             A  +FT+M +    PD +TF+G+L+ACSH G VEEG ++F  M   Y + P++EH+  
Sbjct: 623 EKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSC 682

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC--RTFKRLELGEVA---IVNISR 238
           MVDLLGRAG ++E    I SM M+P+V++WR +L AC     +  ELG  A   ++ +  
Sbjct: 683 MVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEP 742

Query: 239 LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
               +YVLL+NMY   ++W+     R  MK+  V+K  G SW+ +   +H F AGD+ HP
Sbjct: 743 QNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHP 802

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
           E   I   L  L ++ +  G++P T+  L D+  E KE  L +HSEK+A+A+ +L     
Sbjct: 803 EKDLIYDKLRELNRKMRDAGYIPQTKYALFDLELENKEELLSYHSEKIAVAF-VLTRQSA 861

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             IRI KNLR+C DCHS    IS+++ R I++RD  RFH FE G CSCGDYW
Sbjct: 862 LPIRIMKNLRVCGDCHSAFGYISKIVGRQIVLRDSNRFHHFEDGKCSCGDYW 913



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 121/270 (44%), Gaps = 47/270 (17%)

Query: 1   MPDKDVVSWNSMIGGFVRN-ARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           MP+ D VSWNS+IG    + A   +A+++F +M+       + TF +++   + L     
Sbjct: 397 MPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEV 456

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ--RNDVSVWNAMISGV 117
           ++ +H L+++  +  +  +  AL+  Y KCG++   +++F  +   R++VS WN+MISG 
Sbjct: 457 SHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVS-WNSMISGY 515

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC------------------------- 152
             + L   A  +   M       DS TF  +L+AC                         
Sbjct: 516 IHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRACLESDV 575

Query: 153 ----------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
                     S CG ++   ++F+ M  R      +  + +M+    R GH E+A  L T
Sbjct: 576 VVGSALVDMYSKCGRIDYASRFFELMPLR-----NVYSWNSMISGYARHGHGEKALKLFT 630

Query: 203 SMTME---PDVVVWRALLSACRTFKRLELG 229
            M ++   PD V +  +LSAC     +E G
Sbjct: 631 RMMLDGQPPDHVTFVGVLSACSHVGFVEEG 660



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 110/231 (47%), Gaps = 22/231 (9%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG--ALN 58
           M ++++V+W  +I G+ +N + DEA   FR+M+ +   P+ + F S +  C   G     
Sbjct: 160 MSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCK 219

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKC-GKIQMAKEVFDTVQ-RNDVSVWNAMISG 116
               +H LI + +   + ++   LI MY  C      A+ VFD +  RN +S WN++IS 
Sbjct: 220 LGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSIS-WNSIISV 278

Query: 117 VAIHGLAADASAIFTKMEM----FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-- 170
            +  G A  A  +F+ M+     F+  P+         A S   ++EEGR+    + +  
Sbjct: 279 YSRRGDAVSAYDLFSSMQKEGLGFSFKPND--------AFSEFSVLEEGRRKGREVHAHV 330

Query: 171 -RYSIQPQLEHYG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            R  +       G  +V++  ++G I +A  +   M +E D V W +L+S 
Sbjct: 331 IRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELM-VEKDSVSWNSLISG 380



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 131/345 (37%), Gaps = 81/345 (23%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFF----REMLSSKVEP-DKFTFASVIYGCARLGALN 58
           ++ +SWNS+I  + R      A   F    +E L    +P D F+  SV+    R G   
Sbjct: 267 RNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLEEGRRKGREV 326

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
           HA+ +   + + K+ +       L++MY+K G I  A  VF+ +   D   WN++ISG+ 
Sbjct: 327 HAHVIRTGLNDNKVAIG----NGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLD 382

Query: 119 IHGLAADASAIFTKMEMFN---------VLPDS-----------------------ITFL 146
            +  + DA+ +F+ M  ++          L DS                       +TF+
Sbjct: 383 QNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFI 442

Query: 147 GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM 206
            +L+A S   L E   +    +  +Y +        A++   G+ G + E   +   M+ 
Sbjct: 443 NILSAVSSLSLHEVSHQ-IHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSE 501

Query: 207 EPDVVVWRAL-----------------------------------LSACRTFKRLELG-E 230
             D V W ++                                   LSAC +   LE G E
Sbjct: 502 TRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGME 561

Query: 231 VAIVNISRLMGGDYVL---LSNMYCYLKRWDTAENVREIMKKKGV 272
           V    I   +  D V+   L +MY    R D A    E+M  + V
Sbjct: 562 VHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNV 606



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 59/116 (50%), Gaps = 2/116 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++V SWNSMI G+ R+   ++AL+ F  M+     PD  TF  V+  C+ +G +   
Sbjct: 601 MPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEG 660

Query: 61  YWVHNLIIE-KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMI 114
           +     + E  ++       + ++D+  + GK+    +  +++  + +V +W  ++
Sbjct: 661 FEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVL 716



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 40/82 (48%)

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           N  LS  LI++Y + G +  A+++FD +   ++  W  +ISG   +G   +A A F  M 
Sbjct: 133 NLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMV 192

Query: 135 MFNVLPDSITFLGLLTACSHCG 156
               +P+   F   L AC   G
Sbjct: 193 RAGFIPNHYAFGSALRACQESG 214


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 161/411 (39%), Positives = 242/411 (58%), Gaps = 5/411 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD ++WN +I GF ++  +++AL  F +M  +  + + FTF S I   A L  +     V
Sbjct: 511 KDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQV 570

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIHGL 122
           H   ++        ++ ALI +Y KCG I+ AK +F  +  RN+VS WN +I+  + HG 
Sbjct: 571 HGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVS-WNTIITSCSQHGR 629

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F +M+   + P+ +TF+G+L ACSH GLVEEG  YF  M + Y + P  +HY 
Sbjct: 630 GLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYA 689

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            +VD+LGRAG ++ A   +  M +  + ++WR LLSAC+  K +E+GE+A  ++  L   
Sbjct: 690 CVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPH 749

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           D   YVLLSN Y    +W   + VR++MK +G+RK  G+SW+E+   +H F  GDR HP 
Sbjct: 750 DSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPL 809

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           +  I K L  L  R    G+      +  +  +E+K+   + HSEKLA+A+G++   P  
Sbjct: 810 SDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCI 869

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            +R+ KNLR+C DCHSW+K  S + RR I++RD  RFH F  G CSCGDYW
Sbjct: 870 PLRVIKNLRVCDDCHSWMKFTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 132/272 (48%), Gaps = 15/272 (5%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +VV WN M+  + + +   ++   F +M ++ + P+KFT+  ++  C   G +     +H
Sbjct: 310 NVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIH 369

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
           +L I+   E +  +S  LIDMYSK   +  A+++ + +++ DV  W +MI+G   H    
Sbjct: 370 SLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCE 429

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD-HMRSRYS-IQPQLEHYG 182
           +A A F +M+   V PD+I   GL +A S C  ++  R+    H R   S     +  + 
Sbjct: 430 EALATFKEMQDCGVWPDNI---GLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWN 486

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL--M 240
            +V+L  R G  EEA+ L   +    D + W  L+S    F +  L E A++   ++   
Sbjct: 487 TLVNLYARCGRSEEAFSLFREID-HKDEITWNGLISG---FGQSRLYEQALMVFMKMSQA 542

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGV 272
           G  Y    N++ ++       N+ +I + K V
Sbjct: 543 GAKY----NVFTFISAISALANLADIKQGKQV 570



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 112/226 (49%), Gaps = 4/226 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  +DVVSW SMI G+V++   +EAL  F+EM    V PD    AS    CA + A+   
Sbjct: 407 LEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQG 466

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +       +  +   L+++Y++CG+ + A  +F  +   D   WN +ISG    
Sbjct: 467 LQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQS 526

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLE 179
            L   A  +F KM       +  TF+  ++A ++   +++G++   H R+ +     + E
Sbjct: 527 RLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQV--HGRAVKTGHTSETE 584

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKR 225
              A++ L G+ G IE+A  + + M++  + V W  ++++C    R
Sbjct: 585 VANALISLYGKCGSIEDAKMIFSEMSLRNE-VSWNTIITSCSQHGR 629



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 112/215 (52%), Gaps = 2/215 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D V++N++I G  +    + AL+ F EM  S + PD  T AS++  CA +G L     +H
Sbjct: 209 DRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLH 268

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
           + +++  +  ++I   +L+D+Y KCG I+ A ++F+   R +V +WN M+         A
Sbjct: 269 SYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLA 328

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
            +  IF +M+   + P+  T+  +L  C+  G +E G +    +  +   +  +   G +
Sbjct: 329 KSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQ-IHSLSIKNGFESDMYVSGVL 387

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +D+  +   +++A  ++  M  + DVV W ++++ 
Sbjct: 388 IDMYSKYRCLDKARKIL-EMLEKRDVVSWTSMIAG 421



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 138/311 (44%), Gaps = 41/311 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  +D VSW +M+ G+ +     EA R + +M  + V P  +  +SV+  C +       
Sbjct: 104 LSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQG 163

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  + ++       +  ALI +Y   G  ++A+ VF  +   D   +N +ISG A  
Sbjct: 164 RMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQC 223

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
           G    A  IF +M++  + PD +T   LL AC+  G +++G++   + +++  S     E
Sbjct: 224 GHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITE 283

Query: 180 HYGAMVDLLGRAGHIEE---------------------AYGLITSMT------------- 205
             G+++DL  + G IE                      AYG I+ +              
Sbjct: 284 --GSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATG 341

Query: 206 MEPDVVVWRALLSACRTFKRLELGE-VAIVNISRLMGGD-YV--LLSNMYCYLKRWDTAE 261
           + P+   +  +L  C    ++ELGE +  ++I      D YV  +L +MY   +  D A 
Sbjct: 342 IHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKAR 401

Query: 262 NVREIMKKKGV 272
            + E+++K+ V
Sbjct: 402 KILEMLEKRDV 412



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 53/100 (53%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H   + + +  + ++   LID+Y+K G +  A++VF  +   D   W AM+SG A  GL
Sbjct: 65  IHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGL 124

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR 162
             +A  ++++M    V+P       +L+AC+   L  +GR
Sbjct: 125 GKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGR 164


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 166/414 (40%), Positives = 246/414 (59%), Gaps = 15/414 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
           M  ++ ++WN+M+G ++++   ++ L+ +  MLS K V PD  T+ ++  GCA +GA   
Sbjct: 453 MATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKL 512

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +    ++  + LN  ++ A I MYSKCG+I  A+++FD +   DV  WNAMI+G + 
Sbjct: 513 GDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQ 572

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG+   A+  F  M      PD I+++ +L+ CSH GLV+EG+ YFD M   + I P LE
Sbjct: 573 HGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLE 632

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           H+  MVDLLGRAGH+ EA  LI  M M+P   VW ALLSAC+     EL E+A  ++  L
Sbjct: 633 HFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFEL 692

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                G Y+LL+ +Y    + D +  VR++M+ KG++K+ G SW+E+   +H FKA D S
Sbjct: 693 DSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVS 752

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP+  AI   +  L+++    G++             E   +  HHSEKLA+A+GI+   
Sbjct: 753 HPQVIAIRNKMDELMEKIAHLGYV-----------RTESPRSEIHHSEKLAVAFGIMSLP 801

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
               I I KNLRIC DCH+ IK+IS +  R  ++RD +RFH F+ G CSCGDYW
Sbjct: 802 AWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 855



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 114/231 (49%), Gaps = 26/231 (11%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++DVVSWN MI    ++ R  EAL    EM    V  D  T+ S +  CARL +L   
Sbjct: 220 MAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWG 279

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
             +H  +I    +++  +++ALI++Y+KCG  + AK VF+++Q RN VS W  +I G   
Sbjct: 280 KQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVS-WTVLIGGSLQ 338

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-----RSRYSI 174
           +   + +  +F +M    +  D      L++ C            F+ M     R  +S+
Sbjct: 339 YECFSKSVELFNQMRAELMAIDQFALATLISGC------------FNRMDLCLGRQLHSL 386

Query: 175 QPQLEHYGAMV------DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +  H  A+V       L  + G ++ A  + +SM+ E D+V W ++++A
Sbjct: 387 CLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMS-ERDIVSWTSMITA 436



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 110/251 (43%), Gaps = 34/251 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + D++ VSW  +IGG ++   F +++  F +M +  +  D+F  A++I GC     L   
Sbjct: 321 LQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLG 380

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS------------ 108
             +H+L ++       ++S +LI +Y+KCG +Q A+ VF ++   D+             
Sbjct: 381 RQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQI 440

Query: 109 -------------------VWNAMISGVAIHGLAADASAIFTKM-EMFNVLPDSITFLGL 148
                               WNAM+     HG   D   +++ M    +V PD +T++ L
Sbjct: 441 GNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTL 500

Query: 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
              C+  G  + G +   H   +  +   +    A + +  + G I EA  L   +  + 
Sbjct: 501 FRGCADIGANKLGDQIIGHT-VKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGK- 558

Query: 209 DVVVWRALLSA 219
           DVV W A+++ 
Sbjct: 559 DVVSWNAMITG 569



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 103/262 (39%), Gaps = 55/262 (20%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-----------LSSKVEPDKFTFASVIY 49
           + + +V++ N M+ G+ +     +A   F  M           +S    P     +    
Sbjct: 82  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGAL 141

Query: 50  GCARLGA-LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---- 104
           GC  L   L   +W  +   +  +E       AL+DM+ +CG +  A  +F  ++R    
Sbjct: 142 GCRELAPQLLGLFWKFDFWGDPDVE------TALVDMFVRCGYVDFASRLFSQIERPTIF 195

Query: 105 ---------------------------NDVSVWNAMISGVAIHGLAADASAIFTKMEMFN 137
                                       DV  WN MI+ ++  G   +A  +  +M    
Sbjct: 196 CRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKG 255

Query: 138 VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY--GAMVDLLGRAGHIE 195
           V  DS T+   LTAC+    +  G++   H +   S+ PQ++ Y   A+++L  + G  +
Sbjct: 256 VRLDSTTYTSSLTACARLFSLGWGKQL--HAKVIRSL-PQIDPYVASALIELYAKCGSFK 312

Query: 196 EAYGLITSMTMEPDVVVWRALL 217
           EA  +  S+  + + V W  L+
Sbjct: 313 EAKRVFNSL-QDRNSVSWTVLI 333



 Score = 42.7 bits (99), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 77/200 (38%), Gaps = 45/200 (22%)

Query: 73  ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS-------------GVAI 119
           E N I    +++ Y+K G +  A+E+FD + R DV+ WN ++S              +  
Sbjct: 84  EPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGC 143

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR-------- 171
             LA     +F K + +   PD  T   L+     CG V+   + F  +           
Sbjct: 144 RELAPQLLGLFWKFDFWGD-PDVET--ALVDMFVRCGYVDFASRLFSQIERPTIFCRNSM 200

Query: 172 -------YSIQPQLEHY-----------GAMVDLLGRAGHIEEAYGLITSM---TMEPDV 210
                  Y I   +E++             M+  L ++G + EA GL+  M    +  D 
Sbjct: 201 LAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDS 260

Query: 211 VVWRALLSACRTFKRLELGE 230
             + + L+AC     L  G+
Sbjct: 261 TTYTSSLTACARLFSLGWGK 280



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 11/185 (5%)

Query: 43  TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT- 101
             A  +  C   GAL  A  +H  ++   +     L   L+  Y  CG +  A+ +    
Sbjct: 22  ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRAD 81

Query: 102 VQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNV------LPDSITFLGLLTACSHC 155
           ++  +V   N M++G A  G  +DA  +F +M   +V      + D+    G   +C   
Sbjct: 82  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGAL 141

Query: 156 GLVEEGRKYFDHM-RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
           G  E   +      +  +   P +E   A+VD+  R G+++ A  L + +   P +    
Sbjct: 142 GCRELAPQLLGLFWKFDFWGDPDVE--TALVDMFVRCGYVDFASRLFSQIE-RPTIFCRN 198

Query: 215 ALLSA 219
           ++L+ 
Sbjct: 199 SMLAG 203


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 166/414 (40%), Positives = 256/414 (61%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K+V++W +M+ G  +N   ++AL+ F +M   KV  +  T  S+++ CA LG+L   
Sbjct: 408 MGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKG 467

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT-VQRNDVSVWNAMISGVAI 119
             VH   I      + ++++ALIDMY+KCGKI  A+++F+      DV + N+MI G  +
Sbjct: 468 RTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGM 527

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG    A  ++++M    + P+  TF+ LLTACSH GLVEEG+  F  M   + ++PQ +
Sbjct: 528 HGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHK 587

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG-EVA--IVNI 236
           HY  +VDL  RAG +EEA  L+  M  +P   V  ALLS CRT K   +G ++A  ++++
Sbjct: 588 HYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIADRLISL 647

Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
             L  G YV+LSN+Y   ++W++   +R +M+ +G++K  G S +E+   ++ F A D S
Sbjct: 648 DYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVYTFFASDDS 707

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP    I ++L +L    ++EG++P T  VL DV+E  K   L+ HSE+LA+A+G+L T 
Sbjct: 708 HPSWADIYQLLENLRLEVEAEGYIPDTSCVLRDVNEPMKVKLLWGHSERLAIAFGLLSTP 767

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G+ I+I+KNLR+C DCH+  K IS++++R IIVRD  RFH F  G CSC D+W
Sbjct: 768 CGSLIKITKNLRVCVDCHNVTKYISKIVQREIIVRDANRFHHFVNGKCSCNDFW 821



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 122/218 (55%), Gaps = 3/218 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  + ++SWN+MI G+V+N    E+   FR ++ S    D  T  S+I GC++   L + 
Sbjct: 307 MCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENG 366

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ II K++E + +LS A++DMYSKCG I+ A  VF  + + +V  W AM+ G++ +
Sbjct: 367 RILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQN 426

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
           G A DA  +F +M+   V  +S+T + L+  C+H G + +GR    H +R  Y+    + 
Sbjct: 427 GYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVIT 486

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
              A++D+  + G I  A  L  +     DV++  +++
Sbjct: 487 --SALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMI 522



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 113/217 (52%), Gaps = 2/217 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+KDVV WNS+IGG+V+   F E+++ F EM+   + P   T A+++  C + G     
Sbjct: 206 MPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVG 265

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H+ ++   +  +  +  +L+DMYS  G    A  VFD++    +  WNAMISG   +
Sbjct: 266 MCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQN 325

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G+  ++ A+F ++       DS T + L+  CS    +E GR     +  R  ++  L  
Sbjct: 326 GMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCI-IRKELESHLVL 384

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             A+VD+  + G I++A  +   M  + +V+ W A+L
Sbjct: 385 STAIVDMYSKCGAIKQATIVFGRMG-KKNVITWTAML 420



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 99/219 (45%), Gaps = 4/219 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+  V   N+MI GF+RN +  E  R FR M S  +E + +T    +  C  L      
Sbjct: 107 LPETAVC--NAMIAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVG 164

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +    + +   L+  + +++++   K G +  A++VFD +   DV  WN++I G    
Sbjct: 165 MEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQK 224

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  ++  +F +M    + P  +T   LL AC   GL + G     ++ +   +   +  
Sbjct: 225 GLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLA-LGMGNDVFV 283

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             ++VD+    G    A  +  SM     ++ W A++S 
Sbjct: 284 LTSLVDMYSNLGDTGSAALVFDSMCSR-SLISWNAMISG 321



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 2/162 (1%)

Query: 56  ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
            L H   +H  II+  +     L+A LI +YS  G +  A+ VFD     + +V NAMI+
Sbjct: 59  TLIHVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIA 118

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           G   +    +   +F  M   ++  +S T +  L AC+     E G +       R    
Sbjct: 119 GFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEII-RAAVRRGFH 177

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             L    +MV+ L + G++ +A  +   M  E DVV W +++
Sbjct: 178 LHLYVGSSMVNFLVKRGYLADAQKVFDGMP-EKDVVCWNSII 218


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 165/409 (40%), Positives = 251/409 (61%), Gaps = 6/409 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K++VSW S+I G   N R  EAL FFREM+  +++P+  T   V+  CAR+GAL     
Sbjct: 472 EKNIVSWTSIILGLRINNRCFEALFFFREMIR-RLKPNSVTLVCVLSACARIGALTCGKE 530

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H   +   +  +  +  A++DMY +CG+++ A + F +V  ++V+ WN +++G A  G 
Sbjct: 531 IHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQFFSVD-HEVTSWNILLTGYAERGK 589

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
            A A+ +F +M   NV P+ +TF+ +L ACS  G+V EG +YF+ M+ +YSI P L+HY 
Sbjct: 590 GAHATELFQRMVESNVSPNEVTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYA 649

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNI---SRL 239
            +VDLLGR+G +EEAY  I  M M+PD  VW ALL++CR    +ELGE+A  NI      
Sbjct: 650 CVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWGALLNSCRIHHHVELGELAAENIFQDDTT 709

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
             G Y+LLSN+Y    +WD    VR++M++ G+    G SW+E+ G +H F + D  HP+
Sbjct: 710 SVGYYILLSNLYADNGKWDKVAEVRKMMRQNGLIVDPGCSWVEVKGTVHAFLSSDNFHPQ 769

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
            + I+ +L    ++ K  G +   E   MD+ E  K      HSE+LA+ +G++ + PG 
Sbjct: 770 IKEINALLERFYKKMKEAG-VEGPESSHMDIMEASKADIFCGHSERLAIVFGLINSGPGM 828

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGD 408
            I ++KNL +C  CH+ +K ISR +RR I VRD  +FH F+GG+CSC D
Sbjct: 829 PIWVTKNLYMCQSCHNIVKFISREVRREISVRDAEQFHHFKGGICSCTD 877



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 138/283 (48%), Gaps = 20/283 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +++ SWN ++GG+ +   FDEAL  +  ML   V+PD +TF  V+  C  +  L   
Sbjct: 167 MEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRG 226

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +I    E +  +  ALI MY KCG +  A+ VFD +   D   WNAMISG   +
Sbjct: 227 REIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFEN 286

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
           G+  +   +F  M  + V PD +T   ++TAC   G    GR+   + +R+ +   P + 
Sbjct: 287 GVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSI- 345

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS----------ACRTFKRLELG 229
            + +++ +    G IEEA   + S T   D+V W A++S          A  T+K +E  
Sbjct: 346 -HNSLIPMYSSVGLIEEA-ETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAE 403

Query: 230 EVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGV 272
            +    I+       ++LS   C L   D   N+ E+ K+KG+
Sbjct: 404 GIMPDEITIA-----IVLSACSC-LCNLDMGMNLHEVAKQKGL 440



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 115/217 (52%), Gaps = 6/217 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D+VSW +MI G+       +AL  ++ M +  + PD+ T A V+  C+ L  L+    +
Sbjct: 372 RDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNL 431

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H +  +K +    I++ +LIDMY+KC  I  A E+F +    ++  W ++I G+ I+   
Sbjct: 432 HEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRC 491

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYG 182
            +A   F +M +  + P+S+T + +L+AC+  G +  G++   H +R+  S    + +  
Sbjct: 492 FEALFFFREM-IRRLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPN-- 548

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A++D+  R G +E A+    S+  E  V  W  LL+ 
Sbjct: 549 AILDMYVRCGRMEYAWKQFFSVDHE--VTSWNILLTG 583



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 90/210 (42%), Gaps = 2/210 (0%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIE 69
           NS I         D A+ +   M   ++  +   + ++I  C    A      V++ +  
Sbjct: 75  NSHIYQLCLLGNLDRAMSYLDSMHELRIPVEDDAYVALIRLCEWKRARKEGSRVYSYVSI 134

Query: 70  KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAI 129
               L+  L  AL+ M+ + G +  A  VF  +++ ++  WN ++ G A  GL  +A  +
Sbjct: 135 SMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDL 194

Query: 130 FTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLG 189
           + +M    V PD  TF  +L  C     +  GR+   H+  RY  +  ++   A++ +  
Sbjct: 195 YHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHV-IRYGFESDVDVVNALITMYV 253

Query: 190 RAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           + G +  A  +   M    D + W A++S 
Sbjct: 254 KCGDVNTARLVFDKMP-NRDRISWNAMISG 282


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 161/414 (38%), Positives = 254/414 (61%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLGALNH 59
           M +K V SW+S+IG       + E L    +M    +   ++    S +  C  LG+ N 
Sbjct: 191 MDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNF 250

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H +++    ELN  +  +LIDMY K G ++    VF  + + +   +  +I+G+AI
Sbjct: 251 GRCIHGILLRNISELNVAVKTSLIDMYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAI 310

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +A ++F+ M    + PD + ++G+L+ACSH GLV EG + F+ ++  + I+P ++
Sbjct: 311 HGRGREALSVFSDMLEEGLAPDDVVYVGVLSACSHAGLVNEGLQCFNRLQFEHKIKPTIQ 370

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HYG MVDL+GRAG ++ AY LI SM ++P+ VVWR+LLSAC+    LE+GE+A  NI +L
Sbjct: 371 HYGCMVDLMGRAGMLKGAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFKL 430

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                GDY++L+NMY   K+W     +R  M +K + ++ G S +E    +++F + D+S
Sbjct: 431 NQHNPGDYLVLANMYARAKKWADVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKS 490

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
            P+ + I  ++  +  + K EG+ P    VL+DV E+EK   L HHS+KLA+A+ +++TS
Sbjct: 491 QPQCETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTS 550

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G+ IRIS+N+R+C+DCH++ K IS +  R I VRDR RFH F+ G CSC DYW
Sbjct: 551 EGSRIRISRNIRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 604


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 166/409 (40%), Positives = 236/409 (57%), Gaps = 3/409 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D+VS+ SMI  + +  + +EAL+ F EM   +++PD+F  +S++  CA L A      +H
Sbjct: 498 DLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLH 557

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             I++    L+     +L++MY+KCG I  A   F  +    +  W+AMI G+A HG   
Sbjct: 558 VHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGR 617

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
            A  +F +M    V P+ IT + +L AC+H GLV E + YF+ M   +  +P  EHY  M
Sbjct: 618 QALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACM 677

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMG 241
           +DLLGRAG I EA  L+  M  E +  VW ALL A R  K +ELG  A   +  +     
Sbjct: 678 IDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKS 737

Query: 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
           G +VLL+N+Y    +W+    VR +M+   V+K  G SW+E+   ++ F  GDRSH  +Q
Sbjct: 738 GTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQ 797

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
            I   L  L       G++P  E+ L DV + EKE  LYHHSEKLA+A+G++ T  G  I
Sbjct: 798 EIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPI 857

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           R+ KNLR+C DCH+  K I +++ R IIVRD  RFH F+ G CSCGDYW
Sbjct: 858 RVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 906



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 113/221 (51%), Gaps = 8/221 (3%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + D+VSW+++I G+ +N     AL  F EM    V+ ++FTF+SV+  C+ +  L     
Sbjct: 119 EPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQ 178

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH +++    E +  ++  L+ MY+KC +   +K +FD +   +V  WNA+ S       
Sbjct: 179 VHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDF 238

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH---MRSRYSIQPQLE 179
             +A  +F +M +  + P+  +   ++ AC+  GL +  R    H   ++  Y   P   
Sbjct: 239 CGEAVGLFYEMVLSGIKPNEFSLSSMVNACT--GLRDSSRGKIIHGYLIKLGYDWDPFSA 296

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
           +  A+VD+  + G + +A  +   +  +PD+V W A+++ C
Sbjct: 297 N--ALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGC 334



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 112/217 (51%), Gaps = 2/217 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+KD+++WN++I G+ +     EAL  F EM    +  ++ T ++++   A L  ++  
Sbjct: 393 LPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVC 452

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH L ++     +  +  +LID Y KC  ++ A+ +F+     D+  + +MI+  A +
Sbjct: 453 RQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQY 512

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M+   + PD      LL AC++    E+G++   H+  +Y     +  
Sbjct: 513 GQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHIL-KYGFVLDIFA 571

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             ++V++  + G I++A    + +T E  +V W A++
Sbjct: 572 GNSLVNMYAKCGSIDDAGRAFSELT-ERGIVSWSAMI 607



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 94/174 (54%), Gaps = 8/174 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+++VVSWN++   +V+     EA+  F EM+ S ++P++F+ +S++  C  L   +  
Sbjct: 218 IPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRG 277

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +I+   + +   + AL+DMY+K G +  A  VF+ +++ D+  WNA+I+G  +H
Sbjct: 278 KIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLH 337

Query: 121 GLAADASAIFTKME--------MFNVLPDSITFLGLLTACSHCGLVEEGRKYFD 166
                A  +  +M+          ++  D    +GL+   S C L+E+ R  F+
Sbjct: 338 EHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFN 391



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/344 (20%), Positives = 142/344 (41%), Gaps = 64/344 (18%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCAR--------- 53
           D D  S N+++  + +     +A+  F ++     +PD  ++ +VI GC           
Sbjct: 290 DWDPFSANALVDMYAKVGDLADAISVFEKI----KQPDIVSWNAVIAGCVLHEHHEQALE 345

Query: 54  -LGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA 112
            LG +     +H+ +++  +E +  +S  L+DMYSKC  ++ A+  F+ +   D+  WNA
Sbjct: 346 LLGQMKRQ--LHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNA 403

Query: 113 MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY 172
           +ISG + +    +A ++F +M    +  +  T   +L + +   +V   R+    +  + 
Sbjct: 404 IISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHG-LSVKS 462

Query: 173 SIQPQLEHYGAMVDLLGRAGHIEEA------------------------YGL-------- 200
                +    +++D  G+  H+E+A                        YG         
Sbjct: 463 GFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLF 522

Query: 201 --ITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR------LMGGDYVLLSNMYC 252
             +  M ++PD  V  +LL+AC      E G+   V+I +      +  G+   L NMY 
Sbjct: 523 LEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNS--LVNMYA 580

Query: 253 YLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                D A      + ++G+      SW  + G + Q   G ++
Sbjct: 581 KCGSIDDAGRAFSELTERGIV-----SWSAMIGGLAQHGHGRQA 619



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 8/125 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + ++ +VSW++MIGG  ++    +AL+ F +ML   V P+  T  SV+  C   G +  A
Sbjct: 595 LTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEA 654

Query: 61  --YW--VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMIS 115
             Y+  +  L   K ++ ++   A +ID+  + GKI  A E+ + +    + SVW A++ 
Sbjct: 655 KLYFESMEELFGFKPMQEHY---ACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLG 711

Query: 116 GVAIH 120
              IH
Sbjct: 712 AARIH 716



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 56/115 (48%)

Query: 39  PDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEV 98
           P   +++ ++  C    +L     +H  I +  +  +  +   LI++YSKC     A+++
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKL 113

Query: 99  FDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
            D     D+  W+A+ISG A +GL   A   F +M +  V  +  TF  +L ACS
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168


>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
 gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
          Length = 770

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 159/425 (37%), Positives = 255/425 (60%), Gaps = 16/425 (3%)

Query: 1   MPDKDVVSWNSMIGGFVR-----------NARFDEALRFFREMLSSKVEPDKFTFASVIY 49
           M D  +++WN+MI G+ +            +R  +AL  FR++  S ++PD FTF+S++ 
Sbjct: 342 MEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILS 401

Query: 50  GCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV 109
            C+ + AL     +H   I+     + ++++AL++MY+KCG IQ A + F  +       
Sbjct: 402 VCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVT 461

Query: 110 WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169
           W +MISG + HG   +A  +F +M +  V P+ ITF+ LL+ACS+ GLVEE   YFD M+
Sbjct: 462 WTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMK 521

Query: 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG 229
             Y I+P ++HYG M+D+  R G +E+A+  I     EP+  +W +L++ CR+   +EL 
Sbjct: 522 KEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELA 581

Query: 230 EVAIVNISRLMGG---DYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGV 286
             A   +  L       Y+LL NMY   +RW     VR++MK++ V   + +SW+ +   
Sbjct: 582 FYAADKLLELKPKGIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDK 641

Query: 287 IHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKE--GNLYHHSE 344
           ++ F+A DR+HP+A  + ++L +L+++ K+ G+ P     L D  ++EK   G+L HHSE
Sbjct: 642 VYFFRANDRTHPQATELYQLLENLLEKAKAIGYEPYQNAELSDSEDDEKPAAGSLKHHSE 701

Query: 345 KLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLC 404
           +LA+A G+L+T PG  +R++KN+ +C DCHS IK+ S L  R IIVRD  R H+F+ G C
Sbjct: 702 RLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGRC 761

Query: 405 SCGDY 409
           SCGD+
Sbjct: 762 SCGDF 766



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 128/293 (43%), Gaps = 32/293 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDE-ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           +P+K+V++W +MI     +    E  +  F +ML   V P++FT  SV+  C     LN 
Sbjct: 240 IPEKNVITWTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNL 299

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA- 118
              V     +   E N  +  + + +Y + G+   A  +F+ ++   +  WNAMISG A 
Sbjct: 300 GKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQ 359

Query: 119 IHGLAAD----------ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM 168
           I   A D          A  IF  ++   + PD  TF  +L+ CS    +E+G +   H 
Sbjct: 360 IMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQI--HA 417

Query: 169 RS-RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS--------- 218
           ++ +      +    A+V++  + G I++A      M      V W +++S         
Sbjct: 418 QTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRT-FVTWTSMISGYSQHGQPQ 476

Query: 219 -ACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKK 270
            A + F+ + L  V    I+      +V L +   Y    + AE+  ++MKK+
Sbjct: 477 EAIQLFEEMRLAGVRPNEIT------FVSLLSACSYAGLVEEAEHYFDMMKKE 523



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 94/220 (42%), Gaps = 3/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++VV+W +++ G+  N++    L  F EML     P  +T  + +  C     ++  
Sbjct: 139 MPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLG 198

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   I+   E    +  +L  +Y+K G +  A   F  +   +V  W  MIS  A  
Sbjct: 199 KQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAED 258

Query: 121 GLAAD-ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
               +   ++F  M M  V+P+  T   +++ C     +  G++       +   +  L 
Sbjct: 259 EECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQ-VQAFSFKIGCETNLP 317

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              + + L  R G  +EA  L   M  +  ++ W A++S 
Sbjct: 318 VKNSTMYLYLRKGETDEAMRLFEQME-DASIITWNAMISG 356



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/218 (20%), Positives = 95/218 (43%), Gaps = 5/218 (2%)

Query: 44  FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           +  +++ C   G+L  A  VH  + +     +  ++ +L++ Y +C   + A+ +FD + 
Sbjct: 81  YVPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSAARDARRLFDGMP 140

Query: 104 RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
             +V  W A+++G  ++   A    +F +M      P   T    L AC     V+ G++
Sbjct: 141 ERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQ 200

Query: 164 YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTF 223
              +   +Y  +       ++  L  + G ++ A      +  E +V+ W  ++SAC   
Sbjct: 201 VHGYA-IKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIP-EKNVITWTTMISACAED 258

Query: 224 KR-LELGEVAIVN--ISRLMGGDYVLLSNMYCYLKRWD 258
           +  +ELG    ++  +  +M  ++ L S M     R D
Sbjct: 259 EECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLD 296


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 163/413 (39%), Positives = 239/413 (57%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K+VVSW +M+ G+ +N   +EA++ F +M    +EPD FT  SVI  CA L +L   
Sbjct: 336 MTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEG 395

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H   +   +     +S AL+ +Y KCG I+ +  +F+ +   D   W A++SG A  
Sbjct: 396 AQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQF 455

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +   +F  M    + PD +TF+G+L+ACS  GLVE+G + F+ M + + I P  +H
Sbjct: 456 GKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDH 515

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  M+DL  RAG IEEA   I  M   PD + W  LLS+CR +  +++G+ A   ++ + 
Sbjct: 516 YTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELD 575

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
                 YVLLS++Y    +W+    +R+ M+ KG+RK  G SW++    +H F A D+S+
Sbjct: 576 PHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSN 635

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P +  I   L  L  +   EG++P    VL DV + EK   L HHSEKLA+A+G+L   P
Sbjct: 636 PFSDQIYSELEKLNYKMIKEGYVPDMNSVLHDVGDSEKIKMLNHHSEKLAIAFGLLFIPP 695

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IR+ KNLR+C DCH+  K IS++  R I+VRD  RFH F+ G CSCGD+W
Sbjct: 696 GLPIRVVKNLRVCSDCHNATKYISKITNREILVRDTARFHLFKDGTCSCGDFW 748



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 124/226 (54%), Gaps = 4/226 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D +SW SMI GF +N    +A+  FREM    ++ D++TF SV+  C  + AL   
Sbjct: 235 MRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEG 294

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  II    + N  +++AL+DMY KC  I+ A+ VF  +   +V  W AM+ G   +
Sbjct: 295 KQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQN 354

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS-IQPQLE 179
           G + +A   F+ M+ + + PD  T   ++++C++   +EEG ++  H R+  S +   + 
Sbjct: 355 GYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQF--HARALTSGLISFIT 412

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKR 225
              A+V L G+ G IE+++ L   ++ + D V W AL+S    F +
Sbjct: 413 VSNALVTLYGKCGSIEDSHRLFNEISFK-DEVTWTALVSGYAQFGK 457



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 120/251 (47%), Gaps = 37/251 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSS--KVEPDKFTFASVIYGCARLGALN 58
           MP +D VSWNS+I G+       ++++ +  ML +      ++ TF++++   ++ G + 
Sbjct: 101 MPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVK 160

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV--------- 109
               +H  +++        + + L+DMYSK G I  A++VFD +   +V +         
Sbjct: 161 LGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLM 220

Query: 110 ----------------------WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLG 147
                                 W +MI+G   +GL  DA  IF +M++ N+  D  TF  
Sbjct: 221 RCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGS 280

Query: 148 LLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM 206
           +LTAC     ++EG++   + +R+ Y  +  +    A+VD+  +  +I+ A  +   MT 
Sbjct: 281 VLTACGGVMALQEGKQVHAYIIRTDY--KDNIFVASALVDMYCKCKNIKSAEAVFKKMTC 338

Query: 207 EPDVVVWRALL 217
           + +VV W A+L
Sbjct: 339 K-NVVSWTAML 348



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 97/212 (45%), Gaps = 14/212 (6%)

Query: 21  RFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKI-ELNFILS 79
            F +A      ++ +   P+ F   ++I   A+LG++ +A  V + +    +   N ILS
Sbjct: 24  NFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILS 83

Query: 80  AALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM----EM 135
           A     YSK G++   + +FD + R D   WN++ISG A  GL   +   +  M      
Sbjct: 84  A-----YSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGS 138

Query: 136 FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIE 195
           FN+  + ITF  LL   S  G V+ GR+   H+  ++     +     +VD+  + G I 
Sbjct: 139 FNL--NRITFSTLLILASKRGCVKLGRQIHGHV-VKFGFMSYVFVGSPLVDMYSKMGMIS 195

Query: 196 EAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
            A  +   +  E +VV++  L+       R+E
Sbjct: 196 CARKVFDELP-EKNVVMYNTLIMGLMRCGRVE 226


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  328 bits (840), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 163/385 (42%), Positives = 243/385 (63%), Gaps = 8/385 (2%)

Query: 34  SSKVEP-----DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSK 88
           SSK+E        FTFAS++   A +G L     +H L ++     +  +S +L+ MY++
Sbjct: 434 SSKIEGMDDGVSTFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSMYAR 493

Query: 89  CGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGL 148
           CG ++ A   FD ++ ++V  W ++ISG+A HG A  A ++F  M +  V P+ +T++ +
Sbjct: 494 CGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAV 553

Query: 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208
           L+ACSH GLV+EG+++F  M+  + + P++EHY  +VDLL R+G +EEA   I  M  + 
Sbjct: 554 LSACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCKA 613

Query: 209 DVVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVRE 265
           D +VW+ LLSACRT+   E+GE+A   ++N+       YVLLSN+Y     WD    +R 
Sbjct: 614 DALVWKTLLSACRTYGNTEIGEIAANHVINLEPRDPAPYVLLSNLYADAGLWDEVARIRS 673

Query: 266 IMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATEL 325
           +M+ K + K  G SW+++   IH+F+AGD SHP A  I   L +LI+  K  G++P T +
Sbjct: 674 LMRDKNLSKETGLSWMDVGNTIHEFRAGDTSHPLAIDIYAKLVTLIREIKDIGYVPDTSI 733

Query: 326 VLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLR 385
           VL D+SEE KE  L  HSEK+A+A+G++ TS    +RI KNLR+C DCHS IK IS+   
Sbjct: 734 VLHDMSEELKEQYLLQHSEKIAVAFGLITTSATKPMRIFKNLRVCADCHSAIKYISKSTG 793

Query: 386 RVIIVRDRIRFHRFEGGLCSCGDYW 410
           R II+RD  RFHR + G+CSCG+YW
Sbjct: 794 REIILRDSNRFHRMKDGICSCGEYW 818



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 111/226 (49%), Gaps = 19/226 (8%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           ++  V W  +I  +V+     + +  F  ML    EPD ++ +S+I  C  LG++     
Sbjct: 208 ERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQ 267

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCG---KIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
           +H++ +   +  +  +S  L+DMY+K      ++ A++VF T+ R++V  W A+ISG   
Sbjct: 268 LHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQ 327

Query: 120 HGLAA-DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            G+   +  A+F +M   ++ P+ IT+  LL AC++    + GR+   H+     ++  +
Sbjct: 328 SGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHV-----LKTSI 382

Query: 179 EHY----GAMVDLLGRAGHIEEAYGLITS------MTMEPDVVVWR 214
            H      A+V +   +G +EEA            ++M PDV   R
Sbjct: 383 AHVNVVGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETER 428



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 141/308 (45%), Gaps = 48/308 (15%)

Query: 1   MPDKDVVSWNSMIGGFVRNA-RFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           MP  +V+SW ++I G+V++  + +  +  FREML+  + P+  T+++++  CA L   + 
Sbjct: 310 MPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDS 369

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV--------------QRN 105
              +H  +++  I    ++  AL+ MY++ G ++ A++ FD +              +RN
Sbjct: 370 GRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETERN 429

Query: 106 DVSVWN---AMISGVAIHGLAADASA-----IFTKMEMFNVLPDSITFL-------GLLT 150
           + S  +    M  GV+    A+  SA     + TK +  + L     F         L++
Sbjct: 430 NASCSSKIEGMDDGVSTFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVS 489

Query: 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM---E 207
             + CG +E+  + FD M+    I      + +++  L + G+ ++A  +   M +   +
Sbjct: 490 MYARCGYLEDACRAFDEMKDHNVIS-----WTSIISGLAKHGYAKQALSMFHDMILAGVK 544

Query: 208 PDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCY------LKRWDTAE 261
           P+ V + A+LSAC     ++ G+       R M  D+ LL  M  Y      L R    E
Sbjct: 545 PNDVTYIAVLSACSHVGLVKEGKEHF----RSMQKDHGLLPRMEHYACIVDLLARSGLVE 600

Query: 262 NVREIMKK 269
             R+ + +
Sbjct: 601 EARQFINE 608



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 22/172 (12%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA-----RLGA-- 56
           +D+VSW +M     RN    E+LR   EML   + P+ FT  +    C      RL    
Sbjct: 106 RDLVSWTAMASCLARNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAGGV 165

Query: 57  -----LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWN 111
                L   +W  ++ +            ALIDM+++ G +  A+ VFD +      VW 
Sbjct: 166 VLGFVLKTGFWGTDVSV----------GCALIDMFARNGDLVAAQRVFDGLIERTSVVWT 215

Query: 112 AMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
            +I+     G A+    +F  M      PD  +   +++AC+  G V  G++
Sbjct: 216 LLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQ 267



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 65/124 (52%), Gaps = 4/124 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D +V+SW S+I G  ++    +AL  F +M+ + V+P+  T+ +V+  C+ +G +   
Sbjct: 507 MKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSACSHVGLVKEG 566

Query: 61  YWVHNLIIEKKIELNFILS--AALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGV 117
              H   ++K   L   +   A ++D+ ++ G ++ A++  + +  + D  VW  ++S  
Sbjct: 567 KE-HFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCKADALVWKTLLSAC 625

Query: 118 AIHG 121
             +G
Sbjct: 626 RTYG 629



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 110/269 (40%), Gaps = 49/269 (18%)

Query: 45  ASVIYGCARLGALNHAYWVHNLIIEKKI-ELNFILSAALIDMYSKCGKIQMAKEVFDTV- 102
           A ++   AR G L     +H  ++  +I + + +++ +L+ MYSKCG ++ A+ VFD + 
Sbjct: 44  AKLLTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMC 103

Query: 103 QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC---------- 152
              D+  W AM S +A +G   ++  +  +M    + P++ T      AC          
Sbjct: 104 GVRDLVSWTAMASCLARNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAG 163

Query: 153 ------------------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLL------ 188
                               C L++   +  D + ++      +E    +  LL      
Sbjct: 164 GVVLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQ 223

Query: 189 -GRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE--------VAIVNISRL 239
            G A  + E +  +     EPD     +++SAC     + LG+        + +V+ S +
Sbjct: 224 AGCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCV 283

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMK 268
             G    L +MY  LK   + E+ R++ K
Sbjct: 284 SCG----LVDMYAKLKMERSMEHARKVFK 308


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 166/409 (40%), Positives = 236/409 (57%), Gaps = 3/409 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D+VS+ SMI  + +  + +EAL+ F EM   +++PD+F  +S++  CA L A      +H
Sbjct: 525 DLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLH 584

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
             I++    L+     +L++MY+KCG I  A   F  +    +  W+AMI G+A HG   
Sbjct: 585 VHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGR 644

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
            A  +F +M    V P+ IT + +L AC+H GLV E + YF+ M   +  +P  EHY  M
Sbjct: 645 QALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACM 704

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMG 241
           +DLLGRAG I EA  L+  M  E +  VW ALL A R  K +ELG  A   +  +     
Sbjct: 705 IDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKS 764

Query: 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
           G +VLL+N+Y    +W+    VR +M+   V+K  G SW+E+   ++ F  GDRSH  +Q
Sbjct: 765 GTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQ 824

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
            I   L  L       G++P  E+ L DV + EKE  LYHHSEKLA+A+G++ T  G  I
Sbjct: 825 EIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPI 884

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           R+ KNLR+C DCH+  K I +++ R IIVRD  RFH F+ G CSCGDYW
Sbjct: 885 RVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 933



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 118/219 (53%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+++VVSWN++   +V+     EA+  F EM+ S ++P++F+ +S++  C  L   +  
Sbjct: 218 IPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRG 277

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +I+   + +   + AL+DMY+K G +  A  VF+ +++ D+  WNA+I+G  +H
Sbjct: 278 KIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLH 337

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                A  +  +M+   + P+  T    L AC+  GL E GR+    +  +  ++  L  
Sbjct: 338 EHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLM-KMDMESDLFV 396

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              +VD+  +   +E+A  +  ++  E D++ W A++S 
Sbjct: 397 SVGLVDMYSKCDLLEDAR-MAFNLLPEKDLIAWNAIISG 434



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 113/221 (51%), Gaps = 8/221 (3%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           + D+VSW+++I G+ +N     AL  F EM    V+ ++FTF+SV+  C+ +  L     
Sbjct: 119 EPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQ 178

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           VH +++    E +  ++  L+ MY+KC +   +K +FD +   +V  WNA+ S       
Sbjct: 179 VHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDF 238

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH---MRSRYSIQPQLE 179
             +A  +F +M +  + P+  +   ++ AC+  GL +  R    H   ++  Y   P   
Sbjct: 239 CGEAVGLFYEMVLSGIKPNEFSLSSMVNACT--GLRDSSRGKIIHGYLIKLGYDWDPFSA 296

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
           +  A+VD+  + G + +A  +   +  +PD+V W A+++ C
Sbjct: 297 N--ALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGC 334



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 145/332 (43%), Gaps = 48/332 (14%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D+VSWN++I G V +   ++AL    +M  S + P+ FT +S +  CA +G       +H
Sbjct: 323 DIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLH 382

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
           + +++  +E +  +S  L+DMYSKC  ++ A+  F+ +   D+  WNA+ISG + +    
Sbjct: 383 SSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDM 442

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           +A ++F +M    +  +  T   +L + +   +V   R+    +  +      +    ++
Sbjct: 443 EALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHG-LSVKSGFHSDIYVVNSL 501

Query: 185 VDLLGRAGHIEEA------------------------YGL----------ITSMTMEPDV 210
           +D  G+  H+E+A                        YG           +  M ++PD 
Sbjct: 502 IDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDR 561

Query: 211 VVWRALLSACRTFKRLELGEVAIVNISR------LMGGDYVLLSNMYCYLKRWDTAENVR 264
            V  +LL+AC      E G+   V+I +      +  G+   L NMY      D A    
Sbjct: 562 FVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNS--LVNMYAKCGSIDDAGRAF 619

Query: 265 EIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
             + ++G+      SW  + G + Q   G ++
Sbjct: 620 SELTERGIV-----SWSAMIGGLAQHGHGRQA 646



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 112/217 (51%), Gaps = 2/217 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+KD+++WN++I G+ +     EAL  F EM    +  ++ T ++++   A L  ++  
Sbjct: 420 LPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVC 479

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH L ++     +  +  +LID Y KC  ++ A+ +F+     D+  + +MI+  A +
Sbjct: 480 RQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQY 539

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M+   + PD      LL AC++    E+G++   H+  +Y     +  
Sbjct: 540 GQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHIL-KYGFVLDIFA 598

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             ++V++  + G I++A    + +T E  +V W A++
Sbjct: 599 GNSLVNMYAKCGSIDDAGRAFSELT-ERGIVSWSAMI 634



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 8/125 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + ++ +VSW++MIGG  ++    +AL+ F +ML   V P+  T  SV+  C   G +  A
Sbjct: 622 LTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEA 681

Query: 61  --YW--VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMIS 115
             Y+  +  L   K ++ ++   A +ID+  + GKI  A E+ + +    + SVW A++ 
Sbjct: 682 KLYFESMEELFGFKPMQEHY---ACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLG 738

Query: 116 GVAIH 120
              IH
Sbjct: 739 AARIH 743



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 56/115 (48%)

Query: 39  PDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEV 98
           P   +++ ++  C    +L     +H  I +  +  +  +   LI++YSKC     A+++
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKL 113

Query: 99  FDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
            D     D+  W+A+ISG A +GL   A   F +M +  V  +  TF  +L ACS
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168


>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
          Length = 730

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 159/425 (37%), Positives = 255/425 (60%), Gaps = 16/425 (3%)

Query: 1   MPDKDVVSWNSMIGGFVR-----------NARFDEALRFFREMLSSKVEPDKFTFASVIY 49
           M D  +++WN+MI G+ +            +R  +AL  FR++  S ++PD FTF+S++ 
Sbjct: 302 MEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILS 361

Query: 50  GCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV 109
            C+ + AL     +H   I+     + ++++AL++MY+KCG IQ A + F  +       
Sbjct: 362 VCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVT 421

Query: 110 WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169
           W +MISG + HG   +A  +F +M +  V P+ ITF+ LL+ACS+ GLVEE   YFD M+
Sbjct: 422 WTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMK 481

Query: 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG 229
             Y I+P ++HYG M+D+  R G +E+A+  I     EP+  +W +L++ CR+   +EL 
Sbjct: 482 KEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELA 541

Query: 230 EVAIVNISRLMGG---DYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGV 286
             A   +  L       Y+LL NMY   +RW     VR++MK++ V   + +SW+ +   
Sbjct: 542 FYAADKLLELKPKGIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDK 601

Query: 287 IHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKE--GNLYHHSE 344
           ++ F+A DR+HP+A  + ++L +L+++ K+ G+ P     L D  ++EK   G+L HHSE
Sbjct: 602 VYFFRANDRTHPQATELYQLLENLLEKAKAIGYEPYQNAELSDSEDDEKPAAGSLKHHSE 661

Query: 345 KLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLC 404
           +LA+A G+L+T PG  +R++KN+ +C DCHS IK+ S L  R IIVRD  R H+F+ G C
Sbjct: 662 RLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGRC 721

Query: 405 SCGDY 409
           SCGD+
Sbjct: 722 SCGDF 726



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 128/293 (43%), Gaps = 32/293 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDE-ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           +P+K+V++W +MI     +    E  +  F +ML   V P++FT  SV+  C     LN 
Sbjct: 200 IPEKNVITWTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNL 259

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA- 118
              V     +   E N  +  + + +Y + G+   A  +F+ ++   +  WNAMISG A 
Sbjct: 260 GKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQ 319

Query: 119 IHGLAAD----------ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM 168
           I   A D          A  IF  ++   + PD  TF  +L+ CS    +E+G +   H 
Sbjct: 320 IMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQI--HA 377

Query: 169 RS-RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS--------- 218
           ++ +      +    A+V++  + G I++A      M      V W +++S         
Sbjct: 378 QTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTR-TFVTWTSMISGYSQHGQPQ 436

Query: 219 -ACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKK 270
            A + F+ + L  V    I+      +V L +   Y    + AE+  ++MKK+
Sbjct: 437 EAIQLFEEMRLAGVRPNEIT------FVSLLSACSYAGLVEEAEHYFDMMKKE 483



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 94/220 (42%), Gaps = 3/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++VV+W +++ G+  N++    L  F EML     P  +T  + +  C     ++  
Sbjct: 99  MPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLG 158

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   I+   E    +  +L  +Y+K G +  A   F  +   +V  W  MIS  A  
Sbjct: 159 KQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAED 218

Query: 121 GLAAD-ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
               +   ++F  M M  V+P+  T   +++ C     +  G++       +   +  L 
Sbjct: 219 EECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQ-VQAFSFKIGCETNLP 277

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              + + L  R G  +EA  L   M  +  ++ W A++S 
Sbjct: 278 VKNSTMYLYLRKGETDEAMRLFEQME-DASIITWNAMISG 316



 Score = 42.4 bits (98), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 5/167 (2%)

Query: 95  AKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
           A+ +FD +   +V  W A+++G  ++   A    +F +M      P   T    L AC  
Sbjct: 92  ARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLA 151

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
              V+ G++   +   +Y  +       ++  L  + G ++ A      +  E +V+ W 
Sbjct: 152 SCDVDLGKQVHGYA-IKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIP-EKNVITWT 209

Query: 215 ALLSACRTFKR-LELGEVAIVN--ISRLMGGDYVLLSNMYCYLKRWD 258
            ++SAC   +  +ELG    ++  +  +M  ++ L S M     R D
Sbjct: 210 TMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLD 256


>gi|357141490|ref|XP_003572243.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Brachypodium distachyon]
          Length = 884

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 166/413 (40%), Positives = 242/413 (58%), Gaps = 6/413 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREML--SSKVEPDKFTFASVIYGCARLGALNHAY 61
           KD V+WN +I  + RN R  + L  F EM    S+V+PD+ T   ++  C  LGAL+   
Sbjct: 472 KDTVAWNVLITCYARNKRTKDTLWLFDEMRRGESEVKPDEVTCILLLQACTSLGALDFGE 531

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +    +E        +  ++I MY++CG ++ A +VF    +  V  W+AMI G+A +G
Sbjct: 532 QIWEYAVEHGYGCELKVRNSVITMYTRCGCVEKAYQVFCHTPQKSVVTWSAMIMGLAANG 591

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              DA + F +M    V+PD  TF G+L+ACSH GLV+EG ++FD MR  Y + P + HY
Sbjct: 592 FGEDAISAFEEMSRSGVVPDGQTFTGVLSACSHSGLVDEGFRFFDMMRYEYKMMPNVRHY 651

Query: 182 GAMVDLLGRAGHIEEAYGLIT-SMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           G +VDL+GRAG ++EAY L+   M + PD  +WR LL ACR    ++LGE  I ++  L 
Sbjct: 652 GCIVDLMGRAGLLDEAYELVVKEMKVAPDATIWRTLLGACRIHGHVDLGEKVISHLIELK 711

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               GDYVLL N Y     W+    VR++M++  ++ + G + +EL G +H+F A D SH
Sbjct: 712 AQQAGDYVLLLNTYAAAGDWEKVAEVRKLMRENEIQTTPGCTTVELNGELHEFIADDASH 771

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P    I   L  + +  +  G++P     L D+  E KE  L +HSEKLA+A+ +L    
Sbjct: 772 PRKAEIYGKLDEINRHLRIAGYVPHVSSDLHDLDSEGKECALTYHSEKLAIAFALLVMPQ 831

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IR++KNLR+C DCH++ K+ S +  R++IVRDR RFH F GG CSC DYW
Sbjct: 832 RRPIRLAKNLRVCVDCHNFTKVFSGVYNRLVIVRDRTRFHHFNGGQCSCNDYW 884



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 100/197 (50%), Gaps = 9/197 (4%)

Query: 24  EALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH-NLIIEKKIELNFILSAAL 82
           +AL F R M +     + F+ A ++  C     L+HA  +H N++IE  +  + +L+ +L
Sbjct: 394 DALSFLRRMRTLGRRGNAFSLAILLKPCR---TLSHARQLHANVVIEGHLR-DSLLATSL 449

Query: 83  IDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEM--FNVLP 140
           +  Y+ CG    A++VFD +   D   WN +I+  A +    D   +F +M      V P
Sbjct: 450 MRSYAICGVGDCARKVFDEMVMKDTVAWNVLITCYARNKRTKDTLWLFDEMRRGESEVKP 509

Query: 141 DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL 200
           D +T + LL AC+  G ++ G + +++    +    +L+   +++ +  R G +E+AY +
Sbjct: 510 DEVTCILLLQACTSLGALDFGEQIWEYA-VEHGYGCELKVRNSVITMYTRCGCVEKAYQV 568

Query: 201 ITSMTMEPDVVVWRALL 217
               T +  VV W A++
Sbjct: 569 FCH-TPQKSVVTWSAMI 584



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 3/123 (2%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P K VV+W++MI G   N   ++A+  F EM  S V PD  TF  V+  C+  G ++  +
Sbjct: 573 PQKSVVTWSAMIMGLAANGFGEDAISAFEEMSRSGVVPDGQTFTGVLSACSHSGLVDEGF 632

Query: 62  WVHNLI-IEKKIELNFILSAALIDMYSKCGKIQMAKE--VFDTVQRNDVSVWNAMISGVA 118
              +++  E K+  N      ++D+  + G +  A E  V +     D ++W  ++    
Sbjct: 633 RFFDMMRYEYKMMPNVRHYGCIVDLMGRAGLLDEAYELVVKEMKVAPDATIWRTLLGACR 692

Query: 119 IHG 121
           IHG
Sbjct: 693 IHG 695


>gi|357457659|ref|XP_003599110.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488158|gb|AES69361.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 623

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 167/416 (40%), Positives = 250/416 (60%), Gaps = 6/416 (1%)

Query: 1   MPD--KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALN 58
           MP+  K +VSWNS++    +N   +EA   F  M  +   PD  T  S++  C       
Sbjct: 208 MPESEKSIVSWNSIVAVCAQNGMPNEAFNCFDMMRVNGFFPDDATMVSLLQACENFPLGR 267

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H +I    ++ N  +   L+++YSK G++  +++VF+ + + D   W AM++G A
Sbjct: 268 MVEVLHGVIFTCGLDENLTIVTTLLNLYSKLGRLNNSRKVFEEISKPDKVAWTAMLAGYA 327

Query: 119 IHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           +HG   +A   F ++     + PD +TF  LL+ACSH GLV+EG+ +F  M   Y +QP+
Sbjct: 328 MHGCGKEAIEFFERIVREEGMEPDHVTFTHLLSACSHSGLVKEGKYFFRVMSDVYKVQPR 387

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
           L+HY  MVDLLGR G +++A+ LI +M  EP+  VW ALL ACR  + ++LG+ A  N+ 
Sbjct: 388 LDHYSCMVDLLGRCGLLDDAHELIKNMPFEPNSGVWGALLGACRVHRNIDLGKEAAKNLI 447

Query: 238 RLMGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294
            L   D   Y++LSNMY     W+ A  VR +MK K + ++QG S++E    IH+F   D
Sbjct: 448 ALDPSDPRNYIMLSNMYSAAGLWNDASKVRTLMKNKVLTRNQGCSFIEHGNKIHRFVVDD 507

Query: 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK 354
            +HP++  I K L  ++++ +  GF+  TE +L DV EE K   +  HSEK+ALAYG+L 
Sbjct: 508 YTHPDSHRIHKKLEEVMKKIQDVGFVHETESILHDVDEEVKIDMITKHSEKIALAYGLLV 567

Query: 355 TSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           T+    + I KNLRIC DCH+ +K +S + +R II+RD  RFH+F GGLCSCGDYW
Sbjct: 568 TNADMPLVIIKNLRICRDCHNTVKFVSMVEKRTIIIRDTKRFHQFSGGLCSCGDYW 623



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 112/224 (50%), Gaps = 9/224 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
           MP KD VSWNS++ G  +  +  E L  F +M S S+++ ++FTF SVI  C    A + 
Sbjct: 106 MPKKDFVSWNSLVSGLAKIGQLGECLSVFCKMKSDSELKLNEFTFLSVISACVSEKACDE 165

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV--WNAMISGV 117
            Y+VH   ++  +     +  AL++MY K G ++ A  +F  +  ++ S+  WN++++  
Sbjct: 166 GYYVHCCAMKLGLVYEVKVVNALVNMYGKFGFVESAFRLFSEMPESEKSIVSWNSIVAVC 225

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR--KYFDHMRSRYSIQ 175
           A +G+  +A   F  M +    PD  T + LL AC +  L   GR  +    +     + 
Sbjct: 226 AQNGMPNEAFNCFDMMRVNGFFPDDATMVSLLQACENFPL---GRMVEVLHGVIFTCGLD 282

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             L     +++L  + G +  +  +   ++ +PD V W A+L+ 
Sbjct: 283 ENLTIVTTLLNLYSKLGRLNNSRKVFEEIS-KPDKVAWTAMLAG 325



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 77/142 (54%), Gaps = 5/142 (3%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP- 140
           L+  Y K G  + A  +FD + + D   WN+++SG+A  G   +  ++F KM+  + L  
Sbjct: 86  LVSCYLKMGPTKDAYLLFDEMPKKDFVSWNSLVSGLAKIGQLGECLSVFCKMKSDSELKL 145

Query: 141 DSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199
           +  TFL +++AC      +EG  Y+ H  + +  +  +++   A+V++ G+ G +E A+ 
Sbjct: 146 NEFTFLSVISACVSEKACDEG--YYVHCCAMKLGLVYEVKVVNALVNMYGKFGFVESAFR 203

Query: 200 LITSMT-MEPDVVVWRALLSAC 220
           L + M   E  +V W ++++ C
Sbjct: 204 LFSEMPESEKSIVSWNSIVAVC 225


>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
          Length = 770

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 159/425 (37%), Positives = 255/425 (60%), Gaps = 16/425 (3%)

Query: 1   MPDKDVVSWNSMIGGFVR-----------NARFDEALRFFREMLSSKVEPDKFTFASVIY 49
           M D  +++WN+MI G+ +            +R  +AL  FR++  S ++PD FTF+S++ 
Sbjct: 342 MEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILS 401

Query: 50  GCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV 109
            C+ + AL     +H   I+     + ++++AL++MY+KCG IQ A + F  +       
Sbjct: 402 VCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVT 461

Query: 110 WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169
           W +MISG + HG   +A  +F +M +  V P+ ITF+ LL+ACS+ GLVEE   YFD M+
Sbjct: 462 WTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMK 521

Query: 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG 229
             Y I+P ++HYG M+D+  R G +E+A+  I     EP+  +W +L++ CR+   +EL 
Sbjct: 522 KEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELA 581

Query: 230 EVAIVNISRLMGG---DYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGV 286
             A   +  L       Y+LL NMY   +RW     VR++MK++ V   + +SW+ +   
Sbjct: 582 FYAADKLLELKPKGIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDK 641

Query: 287 IHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKE--GNLYHHSE 344
           ++ F+A DR+HP+A  + ++L +L+++ K+ G+ P     L D  ++EK   G+L HHSE
Sbjct: 642 VYFFRANDRTHPQATELYQLLENLLEKAKAIGYEPYQNAELSDSEDDEKPAAGSLKHHSE 701

Query: 345 KLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLC 404
           +LA+A G+L+T PG  +R++KN+ +C DCHS IK+ S L  R IIVRD  R H+F+ G C
Sbjct: 702 RLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGRC 761

Query: 405 SCGDY 409
           SCGD+
Sbjct: 762 SCGDF 766



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 128/293 (43%), Gaps = 32/293 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDE-ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           +P+K+V++W +MI     +    E  L  F +ML   V P++FT  SV+  C     LN 
Sbjct: 240 IPEKNVITWTTMISACAEDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNL 299

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA- 118
              V     +   E N  +  + + +Y + G+   A  +F+ ++   +  WNAMISG A 
Sbjct: 300 GKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQ 359

Query: 119 IHGLAAD----------ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM 168
           I   A D          A  IF  ++   + PD  TF  +L+ CS    +E+G +   H 
Sbjct: 360 IMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQI--HA 417

Query: 169 RS-RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS--------- 218
           ++ +      +    A+V++  + G I++A      M      V W +++S         
Sbjct: 418 QTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRT-FVTWTSMISGYSQHGQPQ 476

Query: 219 -ACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKK 270
            A + F+ + L  V    I+      +V L +   Y    + AE+  ++MKK+
Sbjct: 477 EAIQLFEEMRLAGVRPNEIT------FVSLLSACSYAGLVEEAEHYFDMMKKE 523



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 94/220 (42%), Gaps = 3/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++VV+W +++ G+  N++    L  F EML     P  +T  + +  C     ++  
Sbjct: 139 MPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLG 198

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   I+   E    +  +L  +Y+K G +  A   F  +   +V  W  MIS  A  
Sbjct: 199 KQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAED 258

Query: 121 GLAADAS-AIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
               +   ++F  M M  V+P+  T   +++ C     +  G++       +   +  L 
Sbjct: 259 EECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQ-VQAFSFKIGCETNLP 317

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              + + L  R G  +EA  L   M  +  ++ W A++S 
Sbjct: 318 VKNSTMYLYLRKGETDEAMRLFEQME-DASIITWNAMISG 356



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 97/218 (44%), Gaps = 5/218 (2%)

Query: 44  FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           +  +++ C  +G+L  A  VH  + +     +  ++ +L++ Y +CG  + A+ +FD + 
Sbjct: 81  YVPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDARRLFDGMP 140

Query: 104 RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163
             +V  W A+++G  ++   A    +F +M      P   T    L AC     V+ G++
Sbjct: 141 ERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQ 200

Query: 164 YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTF 223
              +   +Y  +       ++  L  + G ++ A      +  E +V+ W  ++SAC   
Sbjct: 201 VHGYA-IKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIP-EKNVITWTTMISACAED 258

Query: 224 KR-LELGEVAIVN--ISRLMGGDYVLLSNMYCYLKRWD 258
           +  +ELG    ++  +  +M  ++ L S M     R D
Sbjct: 259 EECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLD 296


>gi|115465559|ref|NP_001056379.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|52353535|gb|AAU44101.1| unknown protein [Oryza sativa Japonica Group]
 gi|113579930|dbj|BAF18293.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|215737011|dbj|BAG95940.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 687

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 168/413 (40%), Positives = 246/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+K++VSW +++  + +N  F++AL+ F +M    V P++FT+A  +  CA L  L + 
Sbjct: 275 LPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNG 334

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +    ++        +  AL++MYSK G ++ A+ VF ++   DV  WN++I G A H
Sbjct: 335 NALGACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHH 394

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +A   F  M     +P  +TF+G+L+AC+  GLV+EG  Y + M     ++P  EH
Sbjct: 395 GRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEH 454

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MV LL R G ++EA   I S  +  DVV WR+LLS+C+ ++   LG      I +L 
Sbjct: 455 YTCMVGLLCRVGRLDEAERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQLK 514

Query: 241 G---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSNMY    RWD    VR +M++ GVRK  G SW+++   +H F + D+ H
Sbjct: 515 PKDVGTYVLLSNMYAKANRWDGVVKVRRLMRELGVRKEPGVSWIQVGSEVHVFTSEDKKH 574

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + I K L  LI + K  G++P   + L DV +E+KE +L +HSEKLALA+G+++T  
Sbjct: 575 PYMEQITKKLQELIDKIKVIGYVPNIAVALHDVEDEQKEEHLMYHSEKLALAFGLIRTPK 634

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KN+RIC DCH  IK+IS    R I+VRD +RFH  E G+CSC DYW
Sbjct: 635 GEAIRIMKNVRICDDCHVAIKLISLATGRRIVVRDTVRFHCIEDGVCSCDDYW 687



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 109/219 (49%), Gaps = 14/219 (6%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +V ++NSMI GF+   + D +    R M+ +  + D  ++ +V+  CA    +     VH
Sbjct: 178 NVFAFNSMINGFLDRGQMDGSTSIVRSMVRNVGQWDHVSYVAVLGHCASTKEVVLGSQVH 237

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
              +++++ELN  + +AL+DMY KC     A  VF+ +   ++  W A+++    + L  
Sbjct: 238 TQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFE 297

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG-- 182
           DA  +F  MEM  V P+  T+   L +C+    ++ G        +  +   +  H+G  
Sbjct: 298 DALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNG-------NALGACTMKTGHWGLL 350

Query: 183 ----AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
               A++++  ++G +E+A  +  SM    DVV W +++
Sbjct: 351 PVCNALMNMYSKSGSVEDARRVFLSMPCR-DVVSWNSII 388



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 109/235 (46%), Gaps = 12/235 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++ VS N ++ G+  + R  +AL   R    +    +++  +S +   A + + +  
Sbjct: 76  MPSRNPVSGNLLMSGYASSGRHRDALALLR---VADFGLNEYVLSSAVAATAHVRSYDMG 132

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
              H   I+  +  +  + +A++ MY +C  +  A +VFD V   +V  +N+MI+G    
Sbjct: 133 RQCHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDR 192

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    +++I   M       D ++++ +L  C+    V  G +       R   + +L  
Sbjct: 193 GQMDGSTSIVRSMVRNVGQWDHVSYVAVLGHCASTKEVVLGSQVHTQALKR---RLELNV 249

Query: 181 Y--GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI 233
           Y   A+VD+ G+     EA   +  +  E ++V W A+++A   + + EL E A+
Sbjct: 250 YVGSALVDMYGKCDFPHEA-NRVFEVLPEKNIVSWTAIMTA---YTQNELFEDAL 300



 Score = 38.1 bits (87), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 55  GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAM 113
           G L+    VH  ++ +    + +    LI +Y KCG++ +A++VFD +  RN VS  N +
Sbjct: 30  GELSLGKAVHARVV-RAARFDVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVS-GNLL 87

Query: 114 ISGVAIHGLAADASAIF 130
           +SG A  G   DA A+ 
Sbjct: 88  MSGYASSGRHRDALALL 104


>gi|218192417|gb|EEC74844.1| hypothetical protein OsI_10704 [Oryza sativa Indica Group]
          Length = 614

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 168/395 (42%), Positives = 240/395 (60%), Gaps = 3/395 (0%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
           ++SWN+M+  +  N    EA+  F  M    +EPD  T A+V+  C  + AL+    +H 
Sbjct: 92  LISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHE 151

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
           +I  +++  + +L  AL+DMY+ CG ++ A++VFD++   DV  W ++IS    HG   +
Sbjct: 152 VIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGRE 211

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           A  +F KM    + PDSI F+ +L ACSH GL++ G+ YF  M S + I P+LEHY  MV
Sbjct: 212 AIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMV 271

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---MGG 242
           DLLGRAG I EAY  I  M ++P+  VW ALL ACR    +++G +A  ++ RL     G
Sbjct: 272 DLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTG 331

Query: 243 DYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQA 302
            YVLLSN+Y    RW     VR +M+ KG++K  G S  EL   +H F  GD SHP+++ 
Sbjct: 332 YYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDSVHTFHIGDTSHPQSKM 391

Query: 303 IDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIR 362
           I K L  L++R +  G+ P  E  L DV EE+KEG+L  HSEKLA+A+ ++ T+PGT IR
Sbjct: 392 IYKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPGTPIR 451

Query: 363 ISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFH 397
           I+ NLR C DCH   K+IS +  R II++D  R H
Sbjct: 452 ITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIH 486



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 14/137 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +DVVSW S+I  + R+    EA+  F +M    +EPD   F +++  C+  G L+  
Sbjct: 188 MGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMG 247

Query: 61  -YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ----RNDVSVWNAMIS 115
            ++ +++  E  I       A ++D+  + G I   +E +D +     + +  VW A++ 
Sbjct: 248 KHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCI---REAYDFIMVMPIKPNERVWGALLG 304

Query: 116 GVAIHG------LAADA 126
              IH       LAAD+
Sbjct: 305 ACRIHSNMDIGLLAADS 321



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 11/152 (7%)

Query: 85  MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVL-PDSI 143
           MY++CG+   A ++F+ +Q  DV  WNAMISG A  GL   A  +F ++       PD+ 
Sbjct: 1   MYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAG 60

Query: 144 TFLGLLTACSHCGLVEEG--RKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
           T   +L +     + +    +  FD MR    I      + AM+ +        EA  L 
Sbjct: 61  TMASILPSMGKARVEDIALLKGVFDEMRFTGLIS-----WNAMLAVYTNNEMHVEAVELF 115

Query: 202 TSMT---MEPDVVVWRALLSACRTFKRLELGE 230
             M    +EPD V    +L +C     L LG+
Sbjct: 116 MRMQKDGIEPDAVTLATVLPSCGEVSALSLGK 147


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 162/409 (39%), Positives = 247/409 (60%), Gaps = 3/409 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +VV W +++ G+  N + ++AL+ F EM+   V P++ +F S +  C  L AL+    +H
Sbjct: 268 NVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIH 327

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
              ++  +E +  +  +LI MY +CG +     +F  + + ++  WN++I G A HG   
Sbjct: 328 TAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGM 387

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
            A A F +M    V PD ITF GLL+ACSH G+ ++GR  F +     S + +L+HY  M
Sbjct: 388 WALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACM 447

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMG 241
           VD+LGR+G +EEA  LI +M ++ + +VW  LLSAC    +LE+ E A   I+++     
Sbjct: 448 VDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCS 507

Query: 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
             YVLLSN+Y    RW     +R  MK++G+ K  G+SW+ + G  ++F +GDRSHP + 
Sbjct: 508 SAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSD 567

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
            I + L  L  + K  G++P     L DV +E+KE  L +HSE+LA+ +G++ T  G+ I
Sbjct: 568 RIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGSTI 627

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            + KNLR+C DCHS IK+I++++RR IIVRD  RFH F  G CSCGDYW
Sbjct: 628 TVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 676



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE--PDKFTFASVIYGCARLGALN 58
           MP ++V+SW SMIGG  ++ R +EAL  FR+M+   VE  P   T+  VI  CA   AL 
Sbjct: 161 MPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALY 220

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H  + +     +  +SAALI  Y+ C +++ +  VF      +V +W A+++G  
Sbjct: 221 QGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYG 280

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL--VEEGRKYFDHMRSRYSIQP 176
           ++    DA  +F +M    VLP+  +F   L +C  CGL  ++ GR+       +  ++ 
Sbjct: 281 LNCKHEDALKVFGEMMREGVLPNQSSFTSALNSC--CGLEALDWGRE-IHTAAVKLGLET 337

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
            +    +++ +  R G++ +   +   ++ + ++V W +++  C
Sbjct: 338 DVFVGNSLIVMYYRCGNLNDGVVIFKRIS-KKNIVSWNSVIVGC 380



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 45/249 (18%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           DV  +  MI G+ RN RFD AL+ F EM       D  ++ S+I GC     L  A  + 
Sbjct: 41  DVYLYTMMITGYARNYRFDHALQLFYEMPVK----DVVSWNSMIKGCFDCADLTMARKLF 96

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
           + + E+ +    +    +I+ + + GKI++A+ +F  +   D++ WN+MI G   +G   
Sbjct: 97  DEMPERSV----VSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVE 152

Query: 125 DASAIFTKMEMFNVL---------------------------------PDSITFLGLLTA 151
           D   +F +M   NV+                                 P S T+  ++TA
Sbjct: 153 DGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITA 212

Query: 152 CSHCGLVEEGRKYFDHM-RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
           C++   + +G +   H+ +  YS    +    A++        +E++  +     +  +V
Sbjct: 213 CANASALYQGVQIHAHVFKLGYSFDAYIS--AALITFYANCKQMEDSLRVFHG-KLHMNV 269

Query: 211 VVWRALLSA 219
           V+W AL++ 
Sbjct: 270 VIWTALVTG 278



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 97/228 (42%), Gaps = 24/228 (10%)

Query: 8   SWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV-HNL 66
           S+ SMI   +RN R DEA    R +      PD + +  +I G AR    +HA  + + +
Sbjct: 13  SYQSMITDHLRNQRIDEA----RTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEM 68

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
            ++  +  N ++          C  + MA+++FD +    V  W  MI+G    G    A
Sbjct: 69  PVKDVVSWNSMIKGCF-----DCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVA 123

Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186
             +F KM   ++   +    G    C+  G VE+G + F  M  R  I      + +M+ 
Sbjct: 124 EGLFYKMPFRDIAAWNSMIYGY--CCN--GRVEDGLRLFQEMPCRNVIS-----WTSMIG 174

Query: 187 LLGRAGHIEEAYGLITSMT-----MEPDVVVWRALLSACRTFKRLELG 229
            L + G  EEA GL   M      ++P    +  +++AC     L  G
Sbjct: 175 GLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQG 222



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  K++VSWNS+I G  ++     AL FF +M+ S VEPD+ TF  ++  C+  G     
Sbjct: 365 ISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKG 424

Query: 61  YWVHNLIIEKK-IELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             +     E K  E+     A ++D+  + GK++ A+E+   +  + +  VW  ++S   
Sbjct: 425 RCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACT 484

Query: 119 IH 120
           +H
Sbjct: 485 MH 486


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 166/411 (40%), Positives = 245/411 (59%), Gaps = 5/411 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K+++S+N+      +    DE+  F  E+  + V    FT+A ++ G A +G +     
Sbjct: 412 EKNLISYNTAADANAKALDSDES--FNHEVEHTGVGASPFTYACLLSGAACIGTIVKGEQ 469

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H LI++     N  ++ ALI MYSKCG  + A +VF+ +   +V  W ++ISG A HG 
Sbjct: 470 IHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGF 529

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           A  A  +F +M    V P+ +T++ +L+ACSH GL++E  K+F+ M   +SI P++EHY 
Sbjct: 530 ATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYA 589

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            MVDLLGR+G + EA   I SM  + D +VWR  L +CR  +  +LGE A   I      
Sbjct: 590 CMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPH 649

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           D   Y+LLSN+Y    RWD    +R+ MK+K + K  G SW+E+   +H+F  GD SHP+
Sbjct: 650 DPATYILLSNLYASEGRWDDVAALRKSMKQKKLIKETGYSWIEVDNQVHKFHVGDTSHPQ 709

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           A+ I   L  L  + K+ G++P T+ VL DV +E+KE  L+ HSEK+A+AY ++ T    
Sbjct: 710 ARKIYDELDELALKIKNLGYIPNTDFVLHDVEDEQKEQYLFQHSEKIAVAYALISTPKPK 769

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            IR+ KNLR+C DCH+ IK IS +  R I+VRD  RFH  + G CSC DYW
Sbjct: 770 PIRVFKNLRVCGDCHTAIKYISIVTGREIVVRDANRFHHIKDGKCSCNDYW 820



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 81/153 (52%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K++V+W  MI  + +    D+A+  F  +L S+  PDKFT  S++  C  L   +  
Sbjct: 208 MQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLG 267

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+ +I   +  +  +   L+DMY+K   ++ ++++F+T+  ++V  W A+ISG    
Sbjct: 268 KQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQS 327

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
               +A  +F  M   +V P+  TF  +L AC+
Sbjct: 328 RQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACA 360



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 106/221 (47%), Gaps = 7/221 (3%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSK---VEPDKFTFASVIYGCARLGALNHA 60
           +D+VSW+++I  F  N+    AL  F  ML      + P+++ F +++  C+        
Sbjct: 105 RDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTG 164

Query: 61  YWVHNLIIEKK-IELNFILSAALIDMYSKCG-KIQMAKEVFDTVQRNDVSVWNAMISGVA 118
             +   +++    + +  +  ALIDM++K G  IQ A+ VFD +Q  ++  W  MI+  +
Sbjct: 165 LAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYS 224

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
             GL  DA  +F ++ +    PD  T   LL+AC        G++    +  R  +   +
Sbjct: 225 QLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWV-IRSGLASDV 283

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
                +VD+  ++  +E +  +  +M +  +V+ W AL+S 
Sbjct: 284 FVGCTLVDMYAKSAAVENSRKIFNTM-LHHNVMSWTALISG 323



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 105/220 (47%), Gaps = 6/220 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M   +V+SW ++I G+V++ +  EA++ F  ML   V P+ FTF+SV+  CA L      
Sbjct: 309 MLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIG 368

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   I+  +     +  +LI+MY++ G ++ A++ F+ +   ++  +N   +    +
Sbjct: 369 KQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYN---TAADAN 425

Query: 121 GLAADASAIFT-KMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
             A D+   F  ++E   V     T+  LL+  +  G + +G +    +  +      L 
Sbjct: 426 AKALDSDESFNHEVEHTGVGASPFTYACLLSGAACIGTIVKGEQ-IHALIVKSGFGTNLC 484

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A++ +  + G+ E A  +   M    +V+ W +++S 
Sbjct: 485 INNALISMYSKCGNKEAALQVFNDMGYR-NVITWTSIISG 523



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 94/206 (45%), Gaps = 12/206 (5%)

Query: 47  VIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV--QR 104
           ++  C R G L     +H+ +I+  + L+ +L  +LI +YSKCG  + A  +F  +   +
Sbjct: 45  LLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHK 104

Query: 105 NDVSVWNAMISGVAIHGLAADASAIFTKMEMFN-----VLPDSITFLGLLTACSHCGLVE 159
            D+  W+A+IS  A + +  ++ A+ T + M       + P+   F  LL +CS+     
Sbjct: 105 RDLVSWSAIISCFANNSM--ESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFT 162

Query: 160 EGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            G   F  +         +    A++D+  + G   ++  ++       ++V W  +++ 
Sbjct: 163 TGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMIT- 221

Query: 220 CRTFKRLELGEVAIVNISRLMGGDYV 245
              + +L L + A+    RL+  +Y 
Sbjct: 222 --RYSQLGLLDDAVDLFCRLLVSEYT 245


>gi|413941558|gb|AFW74207.1| hypothetical protein ZEAMMB73_978994 [Zea mays]
          Length = 580

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 174/413 (42%), Positives = 257/413 (62%), Gaps = 5/413 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           DK VV+WN+MI G+ +N     A+  +REM  +   PD  TF + +  CA+ GAL+    
Sbjct: 168 DKSVVAWNAMISGYEQNGLAGRAIEVYREMQMAGEAPDSATFVATLSACAQAGALDLGRQ 227

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           V  LI+ +++E+N +L AAL++MY++CG +  A+E F+ +Q  +V  W +MI+G  +HG 
Sbjct: 228 VDKLIVSERMEMNVVLGAALVNMYARCGLVNKAREWFNMLQERNVVTWTSMIAGYGMHGH 287

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F  M      P+ +TF+ +L+AC+H GLV EGR  F  M+S Y + P++EHY 
Sbjct: 288 GGEAVKLFNLMRQQGPPPNDVTFVAVLSACAHAGLVSEGRDAFASMKSVYGLVPRVEHYC 347

Query: 183 AMVDLLGRAGHIEEAYGLI-TSMTMEPDVVVWRALLSACRTFKRLELG-EVA--IVNISR 238
           +MVD+ GRAG +++A   I  S+  EP   VW A+L AC+  K   LG EVA  ++ +  
Sbjct: 348 SMVDMYGRAGLLDDAMRFIHDSIPGEPGPEVWTAMLGACKMHKDFNLGVEVAERLIALEP 407

Query: 239 LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
                 VLLSN+Y    + +  E VR+ M K+ ++K  G S +E+AGV H F+ G++SHP
Sbjct: 408 ESPSHRVLLSNLYALSGKMNHVEKVRDTMIKRRLKKPIGYSLIEIAGVAHLFRMGEKSHP 467

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP- 357
           +   I + L  LI++    G++P T+ VL ++ EEE+E  L +H EKLA+A+G++ TS  
Sbjct: 468 KTSEIYQYLEKLIEKITDVGYVPKTDSVLHELEEEEREFALRYHGEKLAVAFGLMMTSGC 527

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T IRI KNLRIC DCH  IK +S +  R IIVRD  RFH F+ G CSC +YW
Sbjct: 528 TTPIRIIKNLRICEDCHLAIKYMSAVENREIIVRDMHRFHHFKAGKCSCQEYW 580



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 113/217 (52%), Gaps = 2/217 (0%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P  D   + S+     R      AL F+R +L++ +    F F SV   CA L A+    
Sbjct: 66  PAPDSFLFCSLTRATARRGLPAAALAFYRCLLAAALPFSSFAFTSVAKACADLSAIRAGM 125

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H   +   +  N  +  +L+ +YSKCG++ +A+++FD ++   V  WNAMISG   +G
Sbjct: 126 GIHAHAVLLGLGSNRFVQTSLVVLYSKCGQLDVARKLFDAIRDKSVVAWNAMISGYEQNG 185

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
           LA  A  ++ +M+M    PDS TF+  L+AC+  G ++ GR+  D +     ++  +   
Sbjct: 186 LAGRAIEVYREMQMAGEAPDSATFVATLSACAQAGALDLGRQ-VDKLIVSERMEMNVVLG 244

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
            A+V++  R G + +A     +M  E +VV W ++++
Sbjct: 245 AALVNMYARCGLVNKAREWF-NMLQERNVVTWTSMIA 280



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 15/129 (11%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG----- 55
           + +++VV+W SMI G+  +    EA++ F  M      P+  TF +V+  CA  G     
Sbjct: 267 LQERNVVTWTSMIAGYGMHGHGGEAVKLFNLMRQQGPPPNDVTFVAVLSACAHAGLVSEG 326

Query: 56  --ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMA-KEVFDTVQ-RNDVSVWN 111
             A      V+ L+   ++E       +++DMY + G +  A + + D++       VW 
Sbjct: 327 RDAFASMKSVYGLV--PRVEHY----CSMVDMYGRAGLLDDAMRFIHDSIPGEPGPEVWT 380

Query: 112 AMISGVAIH 120
           AM+    +H
Sbjct: 381 AMLGACKMH 389


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 161/414 (38%), Positives = 241/414 (58%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P +  VSW ++I G+V+       L+ F +M  S +  D+ TFA+V+   A   +L   
Sbjct: 412 LPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLG 471

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  II      N    + L+DMY+KCG I+ A +VF+ +   +   WNA+IS  A +
Sbjct: 472 KQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADN 531

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A   F KM    + PDS++ LG+LTACSHCG VE+G +YF  M   Y I P+ +H
Sbjct: 532 GDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKH 591

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  M+DLLGR G   EA  L+  M  EPD ++W ++L+ACR  K   L E A   + ++ 
Sbjct: 592 YACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSME 651

Query: 238 RLM-GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
           +L     YV +SN+Y     W+   +V++ M+++G++K    SW+E+   IH F + D++
Sbjct: 652 KLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQT 711

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HP    I + +  L    + EG+ P T  V+ DV E+ K  +L +HSE+LA+A+ ++ T 
Sbjct: 712 HPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTP 771

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  I + KNLR C DCH+ IK+IS++++R I VRD  RFH F  G+CSCGDYW
Sbjct: 772 EGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 107/219 (48%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+ D VS+N +I  + +  +++ +L FFREM     +   F FA+++   A L +L   
Sbjct: 311 MPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMG 370

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   +    +    +  +L+DMY+KC   + A+ +F ++ +     W A+ISG    
Sbjct: 371 RQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQK 430

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL      +FTKM   N+  D  TF  +L A +    +  G++    +    +++     
Sbjct: 431 GLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSG 490

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            G +VD+  + G I++A  +   M  + + V W AL+SA
Sbjct: 491 SG-LVDMYAKCGSIKDAVQVFEEMP-DRNAVSWNALISA 527



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 4/155 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML--SSKVEPDKFTFASVIYGCARLGALN 58
           MPD+ VV+W  ++G + RN+ FDEA + FR+M   SS   PD  TF +++ GC      N
Sbjct: 105 MPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQN 164

Query: 59  HAYWVHNLIIEKKIELNFILSAA--LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
               VH   ++   + N  L+ +  L+  Y +  ++ +A  +F+ +   D   +N +I+G
Sbjct: 165 AVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITG 224

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
               GL  ++  +F KM      P   TF G+L A
Sbjct: 225 YEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKA 259



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 102/219 (46%), Gaps = 4/219 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+KD V++N++I G+ ++  + E++  F +M  S  +P  FTF+ V+     L      
Sbjct: 210 IPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALG 269

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L +      +  +   ++D YSK  ++   + +FD +   D   +N +IS  +  
Sbjct: 270 QQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQA 329

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                +   F +M+       +  F  +L+  ++   ++ GR+   H ++  +    + H
Sbjct: 330 DQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQL--HCQALLATADSILH 387

Query: 181 YG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
            G ++VD+  +    EEA  +  S+  +   V W AL+S
Sbjct: 388 VGNSLVDMYAKCEMFEEAELIFKSLP-QRTTVSWTALIS 425


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 169/414 (40%), Positives = 242/414 (58%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M D+D  +W  MI  + R     EAL  F +M    V P   +  S++  CA L +L + 
Sbjct: 291 MEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYG 350

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  ++  + + +  +++ L+ MY KCG++  AK VFD     D+ +WN++ISG A H
Sbjct: 351 RQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASH 410

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL  +A  IF +M     +P+ +T + +LTACS+ G +EEG + F+ M S++ + P +EH
Sbjct: 411 GLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEH 470

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNI---S 237
           Y   VD+LGRAG +++A  LI SMT++PD  VW ALL AC+T  RL+L EVA   +    
Sbjct: 471 YSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENE 530

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQF-KAGDRS 296
               G YVLLS++     +W     VR+ M+   V K  G SW+E+   +H F + G ++
Sbjct: 531 PDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKN 590

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
           HPE   I  +L       +  G+ P    VL DV EEEK  +L  HSE+LA+AYG+LK  
Sbjct: 591 HPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLP 650

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G  IR+ KNLR+C DCH+ IK+IS++  R II+RD  RFH F  G CSC DYW
Sbjct: 651 EGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 110/233 (47%), Gaps = 13/233 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++VV+W +MI G+ +N R D A + F E++  K E    ++ S++ G    G +  A
Sbjct: 198 MRERNVVTWTTMITGYRQNNRVDVARKLF-EVMPEKTE---VSWTSMLLGYTLSGRIEDA 253

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
                ++  K +    I   A+I  + + G+I  A+ VFD ++  D + W  MI      
Sbjct: 254 EEFFEVMPMKPV----IACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERK 309

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  +F +M+   V P   + + +L+ C+    ++ GR+   H+  R      +  
Sbjct: 310 GFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHL-VRCQFDDDVYV 368

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI 233
              ++ +  + G + +A  L+       D+++W +++S    +    LGE A+
Sbjct: 369 ASVLMTMYVKCGELVKA-KLVFDRFSSKDIIMWNSIISG---YASHGLGEEAL 417



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 94/208 (45%), Gaps = 17/208 (8%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++VVSWN ++ G+++N    EA   F  M    V     ++ +++ G  + G +  A
Sbjct: 74  MSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNV----VSWTAMVKGYMQEGMVGEA 129

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +   + E+      ++   LID     G+I  A++++D +   DV     MI G+   
Sbjct: 130 ESLFWRMPERNEVSWTVMFGGLID----DGRIDKARKLYDMMPVKDVVASTNMIGGLCRE 185

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  IF +M   NV    +T+  ++T       V+  RK F+ M  +  +      
Sbjct: 186 GRVDEARLIFDEMRERNV----VTWTTMITGYRQNNRVDVARKLFEVMPEKTEVS----- 236

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEP 208
           + +M+     +G IE+A      M M+P
Sbjct: 237 WTSMLLGYTLSGRIEDAEEFFEVMPMKP 264



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 103/269 (38%), Gaps = 49/269 (18%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K + SWNS++ G+  N    EA + F EM                               
Sbjct: 46  KAIGSWNSIVSGYFSNGLPKEARQLFDEM------------------------------- 74

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
                    E N +    L+  Y K   I  A+ VF+ +   +V  W AM+ G    G+ 
Sbjct: 75  --------SERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMV 126

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A ++F +M   N +  ++ F GL+      G +++ RK +D M  +  +         
Sbjct: 127 GEAESLFWRMPERNEVSWTVMFGGLIDD----GRIDKARKLYDMMPVKDVVAST-----N 177

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD 243
           M+  L R G ++EA  LI     E +VV W  +++  R   R+++       +       
Sbjct: 178 MIGGLCREGRVDEAR-LIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVS 236

Query: 244 YVLLSNMYCYLKRWDTAENVREIMKKKGV 272
           +  +   Y    R + AE   E+M  K V
Sbjct: 237 WTSMLLGYTLSGRIEDAEEFFEVMPMKPV 265



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 22/196 (11%)

Query: 83  IDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDS 142
           I   S+ GKI  A++ FD++Q   +  WN+++SG   +GL  +A  +F +M   NV    
Sbjct: 24  ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNV---- 79

Query: 143 ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
           +++ GL++      ++ E R  F+ M  R  +      + AMV    + G + EA  L  
Sbjct: 80  VSWNGLVSGYIKNRMIVEARNVFELMPERNVVS-----WTAMVKGYMQEGMVGEAESLFW 134

Query: 203 SMTMEPDV---VVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNM---YCYLKR 256
            M    +V   V++  L+   R  K  +L ++  V        D V  +NM    C   R
Sbjct: 135 RMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVK-------DVVASTNMIGGLCREGR 187

Query: 257 WDTAENVREIMKKKGV 272
            D A  + + M+++ V
Sbjct: 188 VDEARLIFDEMRERNV 203


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Glycine max]
          Length = 1033

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 167/412 (40%), Positives = 245/412 (59%), Gaps = 6/412 (1%)

Query: 4    KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
            +D VSWN+MI G++ N    +A+     M+      D FT A+V+  CA +  L     V
Sbjct: 623  RDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSACASVATLERGMEV 682

Query: 64   HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
            H   I   +E   ++ +AL+DMY+KCGKI  A   F+ +   ++  WN+MISG A HG  
Sbjct: 683  HACAIRACLEAEVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHG 742

Query: 124  ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
              A  +FT+M+    LPD +TF+G+L+ACSH GLV+EG ++F  M   Y + P++EH+  
Sbjct: 743  GKALKLFTQMKQHGQLPDHVTFVGVLSACSHVGLVDEGFEHFKSMGEVYELAPRIEHFSC 802

Query: 184  MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC--RTFKRLELGEVA---IVNISR 238
            MVDLLGRAG +++    I +M M P+ ++WR +L AC     +  ELG  A   ++ +  
Sbjct: 803  MVDLLGRAGDVKKLEEFIKTMPMNPNALIWRTILGACCRANSRNTELGRRAAKMLIELEP 862

Query: 239  LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
            L   +YVLLSNM+    +W+  E  R  M+   V+K  G SW+ +   +H F AGD++HP
Sbjct: 863  LNAVNYVLLSNMHAAGGKWEDVEEARLAMRNAEVKKEAGCSWVTMKDGVHVFVAGDQTHP 922

Query: 299  EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
            E + I   L  ++ + +  G++P T+  L D+  E KE  L +HSEKLA+A+ +L     
Sbjct: 923  EKEKIYDKLKEIMNKMRDLGYVPETKYALYDLELENKEELLSYHSEKLAIAF-VLTRQSE 981

Query: 359  TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
              IRI KNLR+C DCH+  K IS ++ R II+RD  RFH F+GG+CSC DYW
Sbjct: 982  LPIRIIKNLRVCGDCHTAFKYISNIVNRQIILRDSNRFHHFDGGICSCQDYW 1033



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 101/214 (47%), Gaps = 12/214 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA--LN 58
           MP K++VSW+ ++ G+ +N   DEA   FR ++S+ + P+ +   S +  C  LG   L 
Sbjct: 100 MPQKNLVSWSCLVSGYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLK 159

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKC-GKIQMAKEVFDTVQRNDVSVWNAMISGV 117
               +H LI +     + +LS  L+ MYS C   I  A+ VF+ ++    + WN++IS  
Sbjct: 160 LGMEIHGLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVY 219

Query: 118 AIHGLAADASAIFTKMEM----FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY- 172
              G A  A  +F+ M+      N  P+  TF  L+T    C LV+ G    + M +R  
Sbjct: 220 CRRGDAISAFKLFSSMQREATELNCRPNEYTFCSLVTVA--CSLVDCGLTLLEQMLARIE 277

Query: 173 --SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
             S    L    A+V    R G I+ A  +   M
Sbjct: 278 KSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQM 311



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 110/220 (50%), Gaps = 2/220 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD VSWNS+I G   N RF+EA+  F  M  + + P KF+  S +  CA LG +   
Sbjct: 416 MPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLG 475

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   I+  ++L+  +S AL+ +Y++   ++  ++VF  +   D   WN+ I  +A  
Sbjct: 476 QQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATS 535

Query: 121 GLAA-DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
             +   A   F +M      P+ +TF+ +L+A S   L+E GR+    +  ++S+     
Sbjct: 536 EASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQ-IHALILKHSVADDNA 594

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               ++   G+   +E+   + + M+   D V W A++S 
Sbjct: 595 IENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISG 634



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 108/221 (48%), Gaps = 4/221 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRN-ARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           MP+ D VSWNS IG    + A   +A+++F EM+ +  +P++ TF +++   + L  L  
Sbjct: 517 MPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLEL 576

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVA 118
              +H LI++  +  +  +   L+  Y KC +++  + +F  + +R D   WNAMISG  
Sbjct: 577 GRQIHALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYI 636

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            +G+   A  +   M       D  T   +L+AC+    +E G +       R  ++ ++
Sbjct: 637 HNGILHKAMGLVWLMMQKGQRLDDFTLATVLSACASVATLERGME-VHACAIRACLEAEV 695

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
               A+VD+  + G I+ A      M +  ++  W +++S 
Sbjct: 696 VVGSALVDMYAKCGKIDYASRFFELMPVR-NIYSWNSMISG 735



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 105/230 (45%), Gaps = 14/230 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREM--------LSSKVEPDKFTFASVIYGCA 52
           M D++ V+ N ++ G  R  + +EA + F+EM         S  V    FT  S +    
Sbjct: 311 MDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDLVEINASSYAVLLSAFTEFSNLKEGK 370

Query: 53  RLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA 112
           R G   HAY + N +++  I    ++  AL+++Y+KC  I  A+ +F  +   D   WN+
Sbjct: 371 RKGQEVHAYLIRNALVDVWI----LIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNS 426

Query: 113 MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY 172
           +ISG+  +    +A A F  M    ++P   + +  L++C+  G +  G++       + 
Sbjct: 427 IISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQQIHGE-GIKC 485

Query: 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRT 222
            +   +    A++ L      +EE Y  +  +  E D V W + + A  T
Sbjct: 486 GLDLDVSVSNALLTLYAETDCMEE-YQKVFFLMPEYDQVSWNSFIGALAT 534



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 4/117 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +++ SWNSMI G+ R+    +AL+ F +M      PD  TF  V+  C+ +G ++  
Sbjct: 721 MPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSHVGLVDEG 780

Query: 61  YWVHNLIIEKKIELNFILS--AALIDMYSKCGKIQMAKEVFDTVQRN-DVSVWNAMI 114
           +  H   + +  EL   +   + ++D+  + G ++  +E   T+  N +  +W  ++
Sbjct: 781 F-EHFKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNALIWRTIL 836



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 104/235 (44%), Gaps = 14/235 (5%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE----PDKFTFASVIYGCARLGALNH 59
           K   SWNS+I  + R      A + F  M     E    P+++TF S++     L     
Sbjct: 207 KTSASWNSIISVYCRRGDAISAFKLFSSMQREATELNCRPNEYTFCSLVTVACSLVDCGL 266

Query: 60  AYWVHNLI-IEKKIEL-NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
                 L  IEK   + +  + +AL+  +++ G I  AK +F+ +   +    N ++ G+
Sbjct: 267 TLLEQMLARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGL 326

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
           A      +A+ IF +M+   V  ++ ++  LL+A +    ++EG++    + + Y I+  
Sbjct: 327 ARQHQGEEAAKIFKEMKDL-VEINASSYAVLLSAFTEFSNLKEGKRKGQEVHA-YLIRNA 384

Query: 178 LEHY-----GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
           L         A+V+L  +   I+ A  +   M    D V W +++S     +R E
Sbjct: 385 LVDVWILIGNALVNLYAKCNAIDNARSIFQLMP-SKDTVSWNSIISGLDHNERFE 438



 Score = 42.7 bits (99), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/97 (21%), Positives = 49/97 (50%)

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
           A+ +H  I +  +  +      L++++ + G +  A+++FD + + ++  W+ ++SG A 
Sbjct: 58  AHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQ 117

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
           +G+  +A  +F  +    +LP+       L AC   G
Sbjct: 118 NGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELG 154


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 162/409 (39%), Positives = 247/409 (60%), Gaps = 3/409 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +VV W +++ G+  N + ++AL+ F EM+   V P++ +F S +  C  L AL+    +H
Sbjct: 252 NVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIH 311

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
              ++  +E +  +  +LI MY +CG +     +F  + + ++  WN++I G A HG   
Sbjct: 312 TAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGM 371

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
            A A F +M    V PD ITF GLL+ACSH G+ ++GR  F +     S + +L+HY  M
Sbjct: 372 WALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACM 431

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMG 241
           VD+LGR+G +EEA  LI +M ++ + +VW  LLSAC    +LE+ E A   I+++     
Sbjct: 432 VDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCS 491

Query: 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
             YVLLSN+Y    RW     +R  MK++G+ K  G+SW+ + G  ++F +GDRSHP + 
Sbjct: 492 SAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSD 551

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
            I + L  L  + K  G++P     L DV +E+KE  L +HSE+LA+ +G++ T  G+ I
Sbjct: 552 RIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGSTI 611

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            + KNLR+C DCHS IK+I++++RR IIVRD  RFH F  G CSCGDYW
Sbjct: 612 TVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 660



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE--PDKFTFASVIYGCARLGALN 58
           MP ++V+SW SMIGG  ++ R +EAL  FR+M+   VE  P   T+  VI  CA   AL 
Sbjct: 145 MPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALY 204

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
               +H  + +     +  +SAALI  Y+ C +++ +  VF      +V +W A+++G  
Sbjct: 205 QGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYG 264

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL--VEEGRKYFDHMRSRYSIQP 176
           ++    DA  +F +M    VLP+  +F   L +C  CGL  ++ GR+       +  ++ 
Sbjct: 265 LNCKHEDALKVFGEMMREGVLPNQSSFTSALNSC--CGLEALDWGRE-IHTAAVKLGLET 321

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
            +    +++ +  R G++ +   +   ++ + ++V W +++  C
Sbjct: 322 DVFVGNSLIVMYYRCGNLNDGVVIFKRIS-KKNIVSWNSVIVGC 364



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 45/249 (18%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           DV  +  MI G+ RN RFD AL+ F EM       D  ++ S+I GC     L  A  + 
Sbjct: 25  DVYLYTMMITGYARNYRFDHALQLFYEMPVK----DVVSWNSMIKGCFDCADLTMARKLF 80

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
           + + E+ +    +    +I+ + + GKI++A+ +F  +   D++ WN+MI G   +G   
Sbjct: 81  DEMPERSV----VSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVE 136

Query: 125 DASAIFTKMEMFNVL---------------------------------PDSITFLGLLTA 151
           D   +F +M   NV+                                 P S T+  ++TA
Sbjct: 137 DGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITA 196

Query: 152 CSHCGLVEEGRKYFDHM-RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
           C++   + +G +   H+ +  YS    +    A++        +E++  +     +  +V
Sbjct: 197 CANASALYQGVQIHAHVFKLGYSFDAYIS--AALITFYANCKQMEDSLRVFHG-KLHMNV 253

Query: 211 VVWRALLSA 219
           V+W AL++ 
Sbjct: 254 VIWTALVTG 262



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K++VSWNS+I G  ++     AL FF +M+ S VEPD+ TF  ++  C+  G       +
Sbjct: 352 KNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCL 411

Query: 64  HNLIIEKK-IELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIH 120
                E K  E+     A ++D+  + GK++ A+E+   +  + +  VW  ++S   +H
Sbjct: 412 FKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMH 470



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 10/139 (7%)

Query: 91  KIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150
           +I  A+ VFD V   DV ++  MI+G A +     A  +F +M     + D +++  ++ 
Sbjct: 10  RIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMP----VKDVVSWNSMIK 65

Query: 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
            C  C  +   RK FD M  R  +      +  M++   + G IE A GL   M    D+
Sbjct: 66  GCFDCADLTMARKLFDEMPERSVVS-----WTTMINGFLQFGKIEVAEGLFYKMPFR-DI 119

Query: 211 VVWRALLSACRTFKRLELG 229
             W +++       R+E G
Sbjct: 120 AAWNSMIYGYCCNGRVEDG 138


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  327 bits (839), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 168/417 (40%), Positives = 254/417 (60%), Gaps = 7/417 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P KD+V+W +M+ GF +NA+  EAL +F  M  S +  D+ T A  I  CA+LGA  +A
Sbjct: 241 LPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYA 300

Query: 61  YWVHNLIIEKKIELN--FILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
                +  +     +   ++ +ALIDMYSKCG ++ A  VF ++   +V  +++MI G+A
Sbjct: 301 DRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLA 360

Query: 119 IHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
            HG A +A  +F  M     + P+++TF+G L ACSH GLV++GR+ FD M   + +QP 
Sbjct: 361 THGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPT 420

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
            +HY  MVDLLGR G ++EA  LI +M++EP   VW ALL ACR     E+ E+A  ++ 
Sbjct: 421 RDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLF 480

Query: 238 RL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWL-ELAGVIHQFKAG 293
            L   + G+Y+LLSN+Y     W     VR+++K+KG++K+   SW+ +  G +H+F  G
Sbjct: 481 ELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPG 540

Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
           + +HP +  I   L  L++R    G+ P    V  DVS+  K   L  H+EKLALA+ +L
Sbjct: 541 NLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLL 600

Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            T+  + I I KNLR+C DCH ++++ S +  +VII+RD +RFH F  G CSCGD+W
Sbjct: 601 TTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 114/255 (44%), Gaps = 41/255 (16%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALN-----HA--- 60
           W ++I G+    +FDEA+  +  M   ++ P  FTF++++  C  +  LN     HA   
Sbjct: 117 WTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTF 176

Query: 61  -------YWVHNLIIEKKI----------------ELNFILSAALIDMYSKCGKIQMAKE 97
                   +V N +I+  +                E + I    LI  Y++ G ++ A E
Sbjct: 177 RLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAE 236

Query: 98  VFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL 157
           +F+++   D+  W AM++G A +    +A   F +ME   +  D +T  G ++AC+  G 
Sbjct: 237 LFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLG- 295

Query: 158 VEEGRKYFDH-----MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
                KY D       +S YS    +    A++D+  + G++EEA  +  SM    +V  
Sbjct: 296 ---ASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMN-NKNVFT 351

Query: 213 WRALLSACRTFKRLE 227
           + +++    T  R +
Sbjct: 352 YSSMILGLATHGRAQ 366



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 117/279 (41%), Gaps = 28/279 (10%)

Query: 57  LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQM---AKEVFDTVQRNDVSVWNAM 113
           LN    +H  ++ K ++ +  +   LI   +K G + M   A+ V + VQ  +  +W A+
Sbjct: 62  LNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLG-VPMDPYARRVIEPVQFRNPFLWTAV 120

Query: 114 ISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
           I G AI G   +A A++  M    + P S TF  LL AC     +  GR++  H ++ + 
Sbjct: 121 IRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQF--HAQT-FR 177

Query: 174 IQPQLEHY--GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV 231
           ++     Y    M+D+  +   I+ A  +   M  E DV+ W  L++A   + R+   E 
Sbjct: 178 LRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMP-ERDVISWTELIAA---YARVGNMEC 233

Query: 232 AIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREI---MKKKGVRKSQGKSWLELAGVIH 288
           A      L   D V  + M     +    +   E    M+K G+R  +    + +AG I 
Sbjct: 234 AAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADE----VTVAGYI- 288

Query: 289 QFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVL 327
                  S        K     +Q  +  G+ P+  +V+
Sbjct: 289 -------SACAQLGASKYADRAVQIAQKSGYSPSDHVVI 320


>gi|222632633|gb|EEE64765.1| hypothetical protein OsJ_19621 [Oryza sativa Japonica Group]
          Length = 656

 Score =  327 bits (839), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 168/413 (40%), Positives = 246/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+K++VSW +++  + +N  F++AL+ F +M    V P++FT+A  +  CA L  L + 
Sbjct: 244 LPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNG 303

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +    ++        +  AL++MYSK G ++ A+ VF ++   DV  WN++I G A H
Sbjct: 304 NALGACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHH 363

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +A   F  M     +P  +TF+G+L+AC+  GLV+EG  Y + M     ++P  EH
Sbjct: 364 GRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEH 423

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y  MV LL R G ++EA   I S  +  DVV WR+LLS+C+ ++   LG      I +L 
Sbjct: 424 YTCMVGLLCRVGRLDEAERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQLK 483

Query: 241 G---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVLLSNMY    RWD    VR +M++ GVRK  G SW+++   +H F + D+ H
Sbjct: 484 PKDVGTYVLLSNMYAKANRWDGVVKVRRLMRELGVRKEPGVSWIQVGSEVHVFTSEDKKH 543

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + I K L  LI + K  G++P   + L DV +E+KE +L +HSEKLALA+G+++T  
Sbjct: 544 PYMEQITKKLQELIDKIKVIGYVPNIAVALHDVEDEQKEEHLMYHSEKLALAFGLIRTPK 603

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  IRI KN+RIC DCH  IK+IS    R I+VRD +RFH  E G+CSC DYW
Sbjct: 604 GEAIRIMKNVRICDDCHVAIKLISLATGRRIVVRDTVRFHCIEDGVCSCDDYW 656



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 97/208 (46%), Gaps = 14/208 (6%)

Query: 16  FVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELN 75
           + + A  DEA+++ ++               V+  CA    +     VH   +++++ELN
Sbjct: 158 YCQCAHMDEAVKYSKKHGEKCRAMGSCVICRVLGHCASTKEVVLGSQVHTQALKRRLELN 217

Query: 76  FILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEM 135
             + +AL+DMY KC     A  VF+ +   ++  W A+++    + L  DA  +F  MEM
Sbjct: 218 VYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEM 277

Query: 136 FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG------AMVDLLG 189
             V P+  T+   L +C+    ++ G        +  +   +  H+G      A++++  
Sbjct: 278 EGVRPNEFTYAVALNSCAGLATLKNG-------NALGACTMKTGHWGLLPVCNALMNMYS 330

Query: 190 RAGHIEEAYGLITSMTMEPDVVVWRALL 217
           ++G +E+A  +  SM    DVV W +++
Sbjct: 331 KSGSVEDARRVFLSMPCR-DVVSWNSII 357



 Score = 38.5 bits (88), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 55  GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAM 113
           G L+    VH  ++ +    + +    LI +Y KCG++ +A++VFD +  RN VS  N +
Sbjct: 30  GELSLGKAVHARVV-RAARFDVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVS-GNLL 87

Query: 114 ISGVAIHGLAADASAIF 130
           +SG A  G   DA A+ 
Sbjct: 88  MSGYASSGRHRDALALL 104


>gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840
 gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana]
 gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  327 bits (839), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 165/413 (39%), Positives = 243/413 (58%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K+VVSW ++I GF +   ++ A+  + EML   ++P+++T A+V+  C++ GAL   
Sbjct: 253 MPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSG 312

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I++  I+L+  +  AL+DMY+KCG++  A  VF  +   D+  W AMI G A+H
Sbjct: 313 IRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVH 372

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A   F +M      PD + FL +LTAC +   V+ G  +FD MR  Y+I+P L+H
Sbjct: 373 GRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKH 432

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
           Y  +VDLLGRAG + EA+ L+ +M + PD+  W AL  AC+  K     E    N+  L 
Sbjct: 433 YVLVVDLLGRAGKLNEAHELVENMPINPDLTTWAALYRACKAHKGYRRAESVSQNLLELD 492

Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
             + G Y+ L   +         E  R  ++K+   +S G S++EL G +++F AGD SH
Sbjct: 493 PELCGSYIFLDKTHASKGNIQDVEKRRLSLQKRIKERSLGWSYIELDGQLNKFSAGDYSH 552

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
              Q I   L  +I     +G+ P  +  + D+ EEEKE     HSEKLAL  G L+T+P
Sbjct: 553 KLTQEIGLKLDEIISLAIQKGYNPGADWSIHDIEEEEKENVTGIHSEKLALTLGFLRTAP 612

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT IRI KNLRIC DCHS +K +S++ +R I++RD  +FH F+ G CSCGDYW
Sbjct: 613 GTTIRIIKNLRICGDCHSLMKYVSKISQRDILLRDARQFHHFKDGRCSCGDYW 665



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 104/218 (47%), Gaps = 16/218 (7%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIE 69
           N++I G   NARF+ ++R F  ML   V+PD+ TF  V+   ++LG       +H   ++
Sbjct: 95  NALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRALHAATLK 154

Query: 70  KKIELNFILSAALIDMYSKCGKIQMAKEVF----DTVQRNDVSVWNAMISGVAIHGLAAD 125
             ++ +  +  +L+DMY+K G+++ A +VF    D +++  + +WN +I+G         
Sbjct: 155 NFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAKDMHM 214

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           A+ +F  M   N    S ++  L+      G +   ++ F+ M  +  +      +  ++
Sbjct: 215 ATTLFRSMPERN----SGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVS-----WTTLI 265

Query: 186 DLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSAC 220
           +   + G  E A      M    ++P+     A+LSAC
Sbjct: 266 NGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSAC 303



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 99/244 (40%), Gaps = 16/244 (6%)

Query: 36  KVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMA 95
           +  PD+  F S+I+ C    +L H   VH  I+ + + L+  ++A L+   S       +
Sbjct: 24  QASPDESHFISLIHACKDTASLRH---VHAQILRRGV-LSSRVAAQLVSCSSLLKSPDYS 79

Query: 96  KEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHC 155
             +F   +  +  V NA+I G+  +     +   F  M    V PD +TF  +L + S  
Sbjct: 80  LSIFRNSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKL 139

Query: 156 GLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD------ 209
           G    GR         +          ++VD+  + G ++ A+ +       PD      
Sbjct: 140 GFRWLGRALHAATLKNFVDCDSFVRL-SLVDMYAKTGQLKHAFQVFEE---SPDRIKKES 195

Query: 210 VVVWRALLSA-CRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMK 268
           +++W  L++  CR  K + +      ++     G +  L   Y      + A+ + E+M 
Sbjct: 196 ILIWNVLINGYCRA-KDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMP 254

Query: 269 KKGV 272
           +K V
Sbjct: 255 EKNV 258


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  327 bits (839), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 156/413 (37%), Positives = 247/413 (59%), Gaps = 3/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D+++WN++I   V +   +  LR    M +  V PD  T  S++  C+ L A    
Sbjct: 536 MKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQG 595

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I +  +E +  +   LI+MYSKCG ++ + +VF  ++  DV  W A+IS   ++
Sbjct: 596 KEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMY 655

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A   F +ME   ++PD + F+ ++ ACSH GLVEEG  YF  M+  Y I+P++EH
Sbjct: 656 GEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEH 715

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           Y  +VDLL R+  +++A   I SM ++PD  +W ALLSACR     E+ +     I+ ++
Sbjct: 716 YACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELN 775

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YVL+SN+Y  L +WD   ++R+ +K +G++K  G SW+E+   ++ F  G +  
Sbjct: 776 PDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFS 835

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
            + + ++K+LG L      EG++   + VL D+ E+EK   L  HSE+LA+A+G+L T P
Sbjct: 836 EQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKP 895

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           GT +++ KNLR+C DCH+  K IS++ +R ++VRD  RFH F+ G CSCGDYW
Sbjct: 896 GTPLQVMKNLRVCEDCHTVTKYISKIXQRELLVRDANRFHVFKDGACSCGDYW 948



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 115/266 (43%), Gaps = 42/266 (15%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P  +V  WNS+I     N  F EAL  + E    +++PD +TF SVI  CA L     A 
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 194

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H+ ++      +  +  ALIDMY +   +  A++VF+ +   DV  WN++ISG   +G
Sbjct: 195 SIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 254

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE--------------------- 160
              +A  I+ +     V+PDS T   +L AC   G VEE                     
Sbjct: 255 YWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNN 314

Query: 161 --------------GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT- 205
                         GR+ FD M  R ++      +  M+    + G  EE+  L   M  
Sbjct: 315 GLLSMYCKFNGLIDGRRIFDKMVLRDAVS-----WNTMICGYSQVGLYEESIKLFMEMVN 369

Query: 206 -MEPDVVVWRALLSACRTFKRLELGE 230
             +PD++   ++L AC     LE G+
Sbjct: 370 QFKPDLLTITSILQACGHLGDLEFGK 395



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 140/309 (45%), Gaps = 39/309 (12%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVVSWNS+I G+  N  ++EAL  +    +  V PD +T +SV+  C  LG++   
Sbjct: 235 MPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG 294

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H LI +  I+ + I++  L+ MY K   +   + +FD +   D   WN MI G +  
Sbjct: 295 DIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQV 354

Query: 121 GLAADASAIFTKMEMFNVL-PDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQL 178
           GL  ++  +F  MEM N   PD +T   +L AC H G +E G+   D+M  S Y      
Sbjct: 355 GLYEESIKLF--MEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTA 412

Query: 179 EH-----------------------------YGAMVDLLGRAGHIEEAYGLITSMT--ME 207
            +                             + +M+++  + G  +EA  L   M   ++
Sbjct: 413 SNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVK 472

Query: 208 PDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSN----MYCYLKRWDTAENV 263
           PD V +  LLS       L LG+    +++++     +++SN    MY        +  V
Sbjct: 473 PDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKV 532

Query: 264 REIMKKKGV 272
            E MK + +
Sbjct: 533 FENMKARDI 541



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 118/224 (52%), Gaps = 5/224 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD VSWNSMI  +++N  FDEA++ F+ M+ + V+PD  T+  ++    +LG L   
Sbjct: 436 MKCKDSVSWNSMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLXLG 494

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  + +     N ++S  L+DMY+KCG++  + +VF+ ++  D+  WN +I+   +H
Sbjct: 495 KELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIAS-CVH 553

Query: 121 GLAADASA-IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
               +    + ++M    V PD  T L +L  CS      +G++    +  +  ++  + 
Sbjct: 554 SEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCI-FKLGLESDVP 612

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTF 223
               ++++  + G +  ++ +   M  + DVV W AL+SAC  +
Sbjct: 613 VGNVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTALISACGMY 655



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 82/177 (46%), Gaps = 3/177 (1%)

Query: 44  FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103
           F+S+    A        + +H+LII   +  + I SA LI  Y+       +  VF    
Sbjct: 75  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLAS 134

Query: 104 -RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR 162
             N+V  WN++I  +  +GL ++A +++++ +   + PD+ TF  ++ AC+     E  +
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 194

Query: 163 KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              D +         L    A++D+  R   +++A  +   M +  DVV W +L+S 
Sbjct: 195 SIHDRVLX-MGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLR-DVVSWNSLISG 249


>gi|297728815|ref|NP_001176771.1| Os12g0128300 [Oryza sativa Japonica Group]
 gi|255670010|dbj|BAH95499.1| Os12g0128300 [Oryza sativa Japonica Group]
          Length = 587

 Score =  327 bits (839), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 158/419 (37%), Positives = 244/419 (58%), Gaps = 30/419 (7%)

Query: 4   KDVVSWNSMIGGFVR---------NARFDEALRFFREMLSSKVEPDKFTFASVIYGCARL 54
            D+ +WN+++  + R          +  D  L  F  MLS  +EP++ T  +VI  C  L
Sbjct: 187 PDLPAWNALLSAYARLRARDVACATSAADAILELFVRMLSLAIEPNEITLVAVIGACGEL 246

Query: 55  GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMI 114
           GA++H  W                  AL++MY+ CG++ +A++VF      D   +NAM+
Sbjct: 247 GAVSHGVW------------------ALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAML 288

Query: 115 SGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI 174
            G+A+HG    A ++  +M    V  D +T L ++ AC+H GLV+EG  YFD M   + I
Sbjct: 289 HGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGI 348

Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIV 234
           +P++EHYG M+D+L RAG +  A  LI  M + P+  ++R+L+ AC    +LELGE  I 
Sbjct: 349 EPRIEHYGCMIDMLSRAGRLNNAEKLIHEMLIVPNAAIYRSLIRACGIHGKLELGEKMIA 408

Query: 235 NISRLM---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFK 291
            + RL     G++VL+SN Y    RW+ A+  R+ MK  G+ K+ G S +++ GV+H+F 
Sbjct: 409 ELMRLEPDDSGNHVLISNFYARTNRWEDAKKARKEMKSMGIDKNPGSSLVDINGVLHEFL 468

Query: 292 AGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYG 351
            GD++HP ++ I  ++  +  R    G   +T   L DV EE+K   L +HSE+LA+A+ 
Sbjct: 469 VGDKTHPASKEIYTMVEEIETRLIECGRRSSTSSALFDVEEEDKADTLSYHSERLAIAFA 528

Query: 352 ILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           ++ ++PG  IRI KNLR+C DCH   K++SR+  R I++RDR RFH F  G+CSCGD+W
Sbjct: 529 LIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 587



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 9/94 (9%)

Query: 77  ILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG--------VAIHGLAADAS- 127
           +L AAL+ ++++CG+I   + VFD +   D+  WNA++S         VA    AADA  
Sbjct: 159 VLGAALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLRARDVACATSAADAIL 218

Query: 128 AIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG 161
            +F +M    + P+ IT + ++ AC   G V  G
Sbjct: 219 ELFVRMLSLAIEPNEITLVAVIGACGELGAVSHG 252



 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 2/121 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY- 61
           D+D   +N+M+ G   +     AL     M  + V  D  T  SV+  CA  G ++    
Sbjct: 278 DRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLD 337

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMA-KEVFDTVQRNDVSVWNAMISGVAIH 120
           +   + IE  IE        +IDM S+ G++  A K + + +   + +++ ++I    IH
Sbjct: 338 YFDRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEMLIVPNAAIYRSLIRACGIH 397

Query: 121 G 121
           G
Sbjct: 398 G 398


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  327 bits (839), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 166/415 (40%), Positives = 259/415 (62%), Gaps = 8/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+K+V+SW S+I G   N R  EAL FF++M+ S ++P+  T  SV+  CAR+GAL+  
Sbjct: 458 IPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCG 516

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   +   +  +  L  AL+DMY +CG+++ A   F++ ++ DV+ WN +++G A  
Sbjct: 517 KEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCEK-DVASWNILLTGYAQQ 575

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G    A  +F KM   +V PD ITF  LL ACS  G+V +G +YF+ M  ++ I P L+H
Sbjct: 576 GKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKH 635

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
           Y ++VDLLGRAG +E+AY  I  M ++PD  +W ALL+ACR ++ +ELGE+A  +I  + 
Sbjct: 636 YASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMD 695

Query: 241 G---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G Y+LL N+Y    +WD    VR+IM++  +    G SW+E+AG +H F  GD  H
Sbjct: 696 TKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFH 755

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I+ +L    ++ ++ G   + +    D+   + E     HSE+LA+A+G++ T P
Sbjct: 756 PQIKEINAVLEGFYEKMEATGLSMSKDSRRDDIDASKAE-IFCGHSERLAIAFGLINTVP 814

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGD--YW 410
           GT I ++KNL +C +CH+ +K IS+++RR I VRD  +FH F+ G+CSCGD  YW
Sbjct: 815 GTPIWVTKNLYMCENCHNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGDEGYW 869



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 110/219 (50%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M ++D+ SWN ++GG+ +   FDEAL  +  ML   + PD +TF  V+  C  L  L   
Sbjct: 155 MAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARG 214

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +I    E +  +  ALI MY KCG I  A+ VFD + R D   WNAMISG   +
Sbjct: 215 REVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFEN 274

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
            +  +   +F  M  F V PD +T   +++AC   G    GR+   ++  +     ++  
Sbjct: 275 DVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYV-IKTGFVAEVSV 333

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             +++ +    G  +EA  + + M  + D+V W A++S 
Sbjct: 334 NNSLIQMHSSVGCWDEAEMVFSKMEFK-DLVSWTAMISG 371



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 117/220 (53%), Gaps = 6/220 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  KD+VSW +MI G+ +N   ++A+  +  M    V PD+ T ASV+  CA LG L+  
Sbjct: 357 MEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKG 416

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H       +    I++ +LIDMYSKC  I  A EVF  +   +V  W ++I G+ ++
Sbjct: 417 IMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLN 476

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
             + +A   F +M + ++ P+S+T + +L+AC+  G +  G++   H +R+       L 
Sbjct: 477 YRSFEALFFFQQM-ILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLP 535

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +  A++D+  R G +E A+    S   E DV  W  LL+ 
Sbjct: 536 N--ALLDMYVRCGRMEPAWNQFNS--CEKDVASWNILLTG 571



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 110/225 (48%), Gaps = 10/225 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +D +SWN+MI G+  N    E LR F  M    V+PD  T  SVI  C  LG     
Sbjct: 256 MPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLG 315

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +I+        ++ +LI M+S  G    A+ VF  ++  D+  W AMISG   +
Sbjct: 316 REVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKN 375

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL   A   +T ME   V+PD IT   +L+AC+  GL+++G      M   ++ +  L  
Sbjct: 376 GLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGI-----MLHEFADRTGLTS 430

Query: 181 Y----GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACR 221
           Y     +++D+  +   I++A  +   +    +V+ W +++   R
Sbjct: 431 YVIVANSLIDMYSKCRCIDKALEVFHRIP-NKNVISWTSIILGLR 474



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 91/210 (43%), Gaps = 2/210 (0%)

Query: 10  NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIE 69
           NS+I         ++AL     M   +V  ++ T+ +++  C    A +    VH+ + +
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122

Query: 70  KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAI 129
               L   L  AL+ M+ + G +  A  VF  +   D+  WN ++ G A  G   +A  +
Sbjct: 123 TVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNL 182

Query: 130 FTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLG 189
           + +M    + PD  TF  +L  C     +  GR+   H+  RY  +  ++   A++ +  
Sbjct: 183 YHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHV-IRYGFESDVDVVNALITMYV 241

Query: 190 RAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           + G I  A  +   M    D + W A++S 
Sbjct: 242 KCGDIFSARLVFDRMPRR-DRISWNAMISG 270


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  327 bits (839), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 166/414 (40%), Positives = 253/414 (61%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP++ +V+WNSMI G+ RN +F +AL+ F  ML   + P+  T    +   + + +L   
Sbjct: 268 MPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTG 327

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
            WVH+ I++   + + +L   LI+MYSKCG ++ A  VF ++ +  +  W ++I G+ +H
Sbjct: 328 RWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMH 387

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GL      +F +M    + P +ITF+G+L ACSH G  E+  +YF  M   Y I+P +EH
Sbjct: 388 GLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEH 447

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG ++D+L RAGH+EEA   I  M ++ + V+W +LLS  R    + +GE A   +++++
Sbjct: 448 YGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLA 507

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G YV+LSNMY     W+    VRE+MKKKG++K  G S +E  G IH+F  GD+SH
Sbjct: 508 PDTTGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSH 567

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEE-EKEGNLYHHSEKLALAYGILKTS 356
           P+ + I   L  + ++    G +P T  VL+ + E+ EKE  L  HSE+LA+A+G+L   
Sbjct: 568 PQTEEIYIKLCEMKKKLNVAGHIPDTTQVLLCLEEDNEKEAELETHSERLAIAFGLLNIK 627

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            G+ IRI KNLRIC+DCH+  K++S +  R II+RD  RFH F+ G CSC D+W
Sbjct: 628 HGSPIRIIKNLRICNDCHAVTKLLSHIYNREIIIRDGSRFHHFKSGSCSCKDFW 681



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 118/219 (53%), Gaps = 15/219 (6%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +  +VSWN +I  ++ N R ++A+  F ++L   V PD FT   V+ GCARLGAL     
Sbjct: 77  EPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDFV-PDSFTLPCVLKGCARLGALQEGKQ 135

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H L+++    ++  + ++L+ MYSKCG+I++ ++VFD ++  DV  WN++I G A  G 
Sbjct: 136 IHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCG- 194

Query: 123 AADASAIFTKMEMFNVLP--DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                 I   +EMF  +P  DS ++  L+   S  G +E  R  FD M  R S+      
Sbjct: 195 -----EIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVS----- 244

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           + AM++   +AG    A  L   M  E  +V W ++++ 
Sbjct: 245 WNAMINGYMKAGDSNTAKELFDQMP-ERSLVTWNSMITG 282



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 111/259 (42%), Gaps = 53/259 (20%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M DKDVVSWNS+I G+ R    + AL  F EM     E D F++  +I G ++ G L  A
Sbjct: 175 MEDKDVVSWNSLIDGYARCGEIELALEMFEEM----PEKDSFSWTILIDGLSKSGKLEAA 230

Query: 61  YWVHN-LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
             V + + I   +  N     A+I+ Y K G    AKE+FD +    +  WN+MI+G   
Sbjct: 231 RDVFDRMPIRNSVSWN-----AMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYER 285

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTAC--------------------------- 152
           +     A  +F  M   ++ P+  T LG ++A                            
Sbjct: 286 NKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVL 345

Query: 153 --------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204
                   S CG V+   + F     R   + +L H+ +++  LG  G +E+   L   M
Sbjct: 346 GTLLIEMYSKCGSVKSALRVF-----RSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEM 400

Query: 205 T---MEPDVVVWRALLSAC 220
               ++P  + +  +L+AC
Sbjct: 401 CRTGLKPHAITFIGVLNAC 419



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 118/267 (44%), Gaps = 16/267 (5%)

Query: 33  LSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYS--KCG 90
           LS  ++P  F   ++ +     G    A  +H L I+     +  +S+ L+ +Y+  +  
Sbjct: 6   LSHSLQP--FLPPNLHFPLQNCGTEREANQLHALSIKTASLNHPSVSSRLLALYADPRIN 63

Query: 91  KIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150
            +Q A  +FD +Q   +  WN +I     +  + DA A+F K+ + + +PDS T   +L 
Sbjct: 64  NLQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKL-LCDFVPDSFTLPCVLK 122

Query: 151 ACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
            C+  G ++EG++     ++  + +   +    ++V +  + G IE    +   M  + D
Sbjct: 123 GCARLGALQEGKQIHGLVLKIGFGVDKFV--LSSLVSMYSKCGEIELCRKVFDRME-DKD 179

Query: 210 VVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKK 269
           VV W +L+     + R    E+A+     +   D    + +   L +    E  R++  +
Sbjct: 180 VVSWNSLIDG---YARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEAARDVFDR 236

Query: 270 KGVRKSQGKSWLELAGVIHQFKAGDRS 296
             +R S   SW   A +    KAGD +
Sbjct: 237 MPIRNSV--SW--NAMINGYMKAGDSN 259


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  327 bits (839), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 171/418 (40%), Positives = 247/418 (59%), Gaps = 8/418 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARF-DEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           + + D+V WN+M+ G+ +N  F ++AL  FR+M      P+  +F  VI  C+ L + + 
Sbjct: 302 ITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQ 361

Query: 60  AYWVHNLIIEKKIELNFI-LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
              +H+L ++  I  N I +  ALI MYSKCG +Q A+ +FD +  ++    N+MI+G A
Sbjct: 362 GKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYA 421

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            HG+  ++  +F  M    + P SITF+ +L+AC+H G VEEG  YF+ M+ +++I+P+ 
Sbjct: 422 QHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEA 481

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           EHY  M+DLLGRAG + EA  LI  M   P  + W +LL ACRT   +EL   A   + +
Sbjct: 482 EHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQ 541

Query: 239 LMGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L   +   YV+LSNMY    RW+    VR+ M+ +GV+K  G SW+E+   IH F A D 
Sbjct: 542 LEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDS 601

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMD---VSEEEKEGNLYHHSEKLALAYGI 352
           SHP  + I + L  +  + K  G++P     L+        EKE  L HHSEKLA+A+G+
Sbjct: 602 SHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGL 661

Query: 353 LKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + T  G  + + KNLRIC DCH+ IK IS +  R I VRD  RFH F+ G CSCGDYW
Sbjct: 662 ISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 102/204 (50%), Gaps = 2/204 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D VSWNSMI  + ++    +AL  F+EM+   +  D FT ASV+     L  L+     
Sbjct: 203 RDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQF 262

Query: 64  HNLIIEKKIELNFILSAALIDMYSKC-GKIQMAKEVFDTVQRNDVSVWNAMISGVAIH-G 121
           H  +I+     N  + + LID+YSKC G +   ++VF+ +   D+ +WN M+SG + +  
Sbjct: 263 HGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEE 322

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              DA   F +M+     P+  +F+ +++ACS+     +G++             ++   
Sbjct: 323 FLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVD 382

Query: 182 GAMVDLLGRAGHIEEAYGLITSMT 205
            A++ +  + G++++A  L   M 
Sbjct: 383 NALIAMYSKCGNLQDARRLFDRMA 406



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 103/223 (46%), Gaps = 10/223 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA-RLGALNH 59
           +P+ D+VS+N++I  +        AL  F  M    ++ D FT ++VI  C   +G +  
Sbjct: 100 IPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACCDDVGLIGQ 159

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ--RNDVSVWNAMISGV 117
              +H++ +    +    ++ AL+  Y K G +  AK VF  +   R++VS WN+MI   
Sbjct: 160 ---LHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVS-WNSMIVAY 215

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
             H   + A  +F +M    +  D  T   +LTA +    +  G ++  H +   +   Q
Sbjct: 216 GQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQF--HGQLIKTGFHQ 273

Query: 178 LEHYGA-MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             H G+ ++DL  + G        +     EPD+V+W  ++S 
Sbjct: 274 NSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSG 316



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 4/107 (3%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+L I+  I  +   S   I +YSKCG++  A++ F  +   +V  +NA+I+  A    
Sbjct: 30  LHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESR 89

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169
              A  +F ++      PD +++  L++A + CG        F  MR
Sbjct: 90  PLIAHQLFDQIPE----PDLVSYNTLISAYADCGETAPALGLFSGMR 132



 Score = 45.4 bits (106), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 5/140 (3%)

Query: 81  ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP 140
           A+I  Y+K  +  +A ++FD +   D+  +N +IS  A  G  A A  +F+ M    +  
Sbjct: 79  AIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDM 138

Query: 141 DSITFLGLLTA-CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199
           D  T   ++TA C   GL+  G+ +   + S +     + +  A++   G+ G +++A  
Sbjct: 139 DGFTLSAVITACCDDVGLI--GQLHSVAVSSGFDSYVSVNN--ALLTYYGKNGDLDDAKR 194

Query: 200 LITSMTMEPDVVVWRALLSA 219
           +   M    D V W +++ A
Sbjct: 195 VFYGMGGIRDEVSWNSMIVA 214


>gi|449479798|ref|XP_004155710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g50990-like [Cucumis sativus]
          Length = 376

 Score =  327 bits (838), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 147/238 (61%), Positives = 190/238 (79%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +DVV+WNS+IGG V+NAR+DEA RFFR+ML+S ++PD FTFAS++  CA+LGA ++ 
Sbjct: 129 MPFRDVVTWNSIIGGCVKNARYDEAFRFFRQMLTSNIQPDGFTFASILNACAQLGAPSNT 188

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
           +WVH  + +KKIELN +L+ ALID YSKCG IQ+AKE+F  +  +D SVWN MI G+AIH
Sbjct: 189 HWVHAQMTQKKIELNSLLTCALIDAYSKCGSIQIAKEIFSNIPHSDTSVWNVMIKGLAIH 248

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           GLA DA ++F +ME  +VLPD+ITFLG+LTAC+H  L++ GR+YF+ M+S YSIQPQLEH
Sbjct: 249 GLAMDALSLFLRMEHESVLPDAITFLGVLTACNHGCLIDHGRRYFELMKSHYSIQPQLEH 308

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           YG MVDL  RAG +EEAY LI +M +EPDVV WR LLS CR +K  +L EVAI N+S+
Sbjct: 309 YGVMVDLYSRAGFLEEAYSLIVTMPIEPDVVTWRTLLSGCRIYKNHKLAEVAIANMSQ 366



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 82/173 (47%), Gaps = 4/173 (2%)

Query: 45  ASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR 104
           AS++    R+G LN  + + +++  K+++L  +    LI  + K G+ + AK+VF  +  
Sbjct: 74  ASLVSTYQRVGCLNRVHQLLDILCSKQLDL--VAMNLLIGNFMKIGECKFAKKVFYKMPF 131

Query: 105 NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKY 164
            DV  WN++I G   +    +A   F +M   N+ PD  TF  +L AC+  G       +
Sbjct: 132 RDVVTWNSIIGGCVKNARYDEAFRFFRQMLTSNIQPDGFTFASILNACAQLG-APSNTHW 190

Query: 165 FDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
                ++  I+       A++D   + G I+ A  + +++    D  VW  ++
Sbjct: 191 VHAQMTQKKIELNSLLTCALIDAYSKCGSIQIAKEIFSNIP-HSDTSVWNVMI 242


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  327 bits (838), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 172/418 (41%), Positives = 249/418 (59%), Gaps = 16/418 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+K +++WN+MI G+ +N      L  +R+M  + + PD  T   V+  CA LGA  HA
Sbjct: 220 MPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGA--HA 277

Query: 61  YWVHNLIIEKKIEL-----NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
                  +E++IEL     N  L  ALI+MY++CG +  A+ +FD +   +V  W A+I+
Sbjct: 278 AGRE---VEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIA 334

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           G  +HG    A  +F +M   + LPD   F+ +L+ACSH GL E+G  YF  M   Y +Q
Sbjct: 335 GYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQ 394

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA--- 232
           P  EHY  +VDLLGRAG +EEA  LI SM++EPD  VW ALL AC+  + +EL E+A   
Sbjct: 395 PGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEK 454

Query: 233 IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKA 292
           ++       G YVLLSN++      +    VR +M+++ ++K  G S++E  G IH F A
Sbjct: 455 VIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRIHLFLA 514

Query: 293 GDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGI 352
           GDR+HP+AQ I  +L  L    K  G     +    +   EE    +  HSEKLA+A+G+
Sbjct: 515 GDRTHPQAQEIYHMLDGLEDIIKRRGGSNDND---QESRNEELITGMGVHSEKLAIAFGL 571

Query: 353 LKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + T PGTEI + KNLR+C DCH ++K++S ++ R ++VRD  RFH F+ G+CSC DYW
Sbjct: 572 INTEPGTEITVIKNLRVCGDCHLFLKLVSEIVDRQLVVRDATRFHHFKNGVCSCKDYW 629



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 116/215 (53%), Gaps = 4/215 (1%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
            V +N++I G+  N+RF +A+  FR+M    V  +  T   +I  CA    L     +H 
Sbjct: 124 AVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHA 183

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
             +   ++ +  +   L+ MY +CG +  A+++FD +    +  WNAMISG A +GLA  
Sbjct: 184 CSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGH 243

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR-SRYSIQPQLEHYGAM 184
              ++ KME   ++PD +T +G+L++C+H G    GR+    +  S +   P L++  A+
Sbjct: 244 VLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKN--AL 301

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +++  R G++ +A  +   MT E +V+ W A+++ 
Sbjct: 302 INMYARCGNLVKARAIFDGMT-EKNVISWTAIIAG 335



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 102/217 (47%), Gaps = 6/217 (2%)

Query: 6   VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
             SWN+ +    R   F EAL  + +ML+S   P+ FTF      CA L        +H 
Sbjct: 21  TASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHG 80

Query: 66  LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ--RNDVSVWNAMISGVAIHGLA 123
            +I+   E    +  +LI MY KC  I  A++VFD     RN    +NA+I+G +++   
Sbjct: 81  HVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRF 140

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLEHYG 182
           +DA  +F +M    V  +++T LGL+  C+  G +  G     H  S R+ +   L    
Sbjct: 141 SDAVLLFRQMRKEGVSVNAVTMLGLIPVCA--GPIHLGFGTSLHACSVRFGLDGDLSVGN 198

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            ++ +  R G ++ A  L   M  E  ++ W A++S 
Sbjct: 199 CLLTMYVRCGSVDFARKLFDGMP-EKGLITWNAMISG 234


>gi|242090555|ref|XP_002441110.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
 gi|241946395|gb|EES19540.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
          Length = 516

 Score =  327 bits (838), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 168/414 (40%), Positives = 243/414 (58%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE-PDKFTFASVIYGCARLGALNH 59
           MP++ + +W ++I GFV+      A+  F EM    V   D F  A+V+ G A L AL  
Sbjct: 103 MPERGLFAWTALISGFVKAGNNTGAVGLFVEMRRDGVRIDDAFVLATVVGGAAELAALVL 162

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H   I      + I+  AL+DMYSKC  I  A+EVF  +   DV  W  ++ G A 
Sbjct: 163 GRQLHGFAITLGFLSSMIVGNALVDMYSKCSDIHSAREVFGGIIVRDVVSWTTILVGEAQ 222

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +  A++ +M +  + P+ +TF+GL+ ACSH GLV++GR+ FD M+  Y I+P L+
Sbjct: 223 HGRVEEVLALYDRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGIKPGLQ 282

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY   +DLL R+G++ EA  LIT+M  EPD   W ALLSAC+     ++      N+  L
Sbjct: 283 HYTCYLDLLSRSGYLSEAEELITTMPYEPDEASWGALLSACKKHNDTQMCLRVADNLLEL 342

Query: 240 MGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
              D   Y+LLSN+Y    +WD+   VR+IM +  +RK  G SW+E       F AG+  
Sbjct: 343 RPKDPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKEPGYSWIEAGRESRMFHAGEVP 402

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
               + I + L  L+   +  G++P T  V+ D+ E EKE +L+ HSE+LA+A+GILK+ 
Sbjct: 403 LDIGEEITRFLEELVSEMRKRGYVPDTSSVMHDLEENEKEQHLFLHSERLAVAFGILKSP 462

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PG+ IR+ KNLR+C DCH+ +K IS + +R IIVRD  RFH FE G CSC ++W
Sbjct: 463 PGSVIRVVKNLRVCGDCHTVMKFISEIAQRKIIVRDASRFHHFEDGNCSCSEFW 516



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 1/128 (0%)

Query: 32  MLSSK-VEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCG 90
           MLS   + PD F  AS+    ARL +L     +H   +      + ++ ++LIDMY KCG
Sbjct: 1   MLSDDALRPDHFVLASLASAAARLRSLRLGRQLHAHFVASPYSADDVVKSSLIDMYCKCG 60

Query: 91  KIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150
             + A++VFD++   +  VW A++SG A +G   +A  +F  M    +   +    G + 
Sbjct: 61  VPEDARKVFDSIGVKNGVVWTALVSGYASNGCTGEAIDLFRSMPERGLFAWTALISGFVK 120

Query: 151 ACSHCGLV 158
           A ++ G V
Sbjct: 121 AGNNTGAV 128


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  327 bits (838), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 171/418 (40%), Positives = 247/418 (59%), Gaps = 8/418 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARF-DEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           + + D+V WN+M+ G+ +N  F ++AL  FR+M      P+  +F  VI  C+ L + + 
Sbjct: 302 ITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQ 361

Query: 60  AYWVHNLIIEKKIELNFI-LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
              +H+L ++  I  N I +  ALI MYSKCG +Q A+ +FD +  ++    N+MI+G A
Sbjct: 362 GKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYA 421

Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            HG+  ++  +F  M    + P SITF+ +L+AC+H G VEEG  YF+ M+ +++I+P+ 
Sbjct: 422 QHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEA 481

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           EHY  M+DLLGRAG + EA  LI  M   P  + W +LL ACRT   +EL   A   + +
Sbjct: 482 EHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQ 541

Query: 239 LMGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L   +   YV+LSNMY    RW+    VR+ M+ +GV+K  G SW+E+   IH F A D 
Sbjct: 542 LEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDS 601

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMD---VSEEEKEGNLYHHSEKLALAYGI 352
           SHP  + I + L  +  + K  G++P     L+        EKE  L HHSEKLA+A+G+
Sbjct: 602 SHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGL 661

Query: 353 LKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           + T  G  + + KNLRIC DCH+ IK IS +  R I VRD  RFH F+ G CSCGDYW
Sbjct: 662 ISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 102/204 (50%), Gaps = 2/204 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D VSWNSMI  + ++    +AL  F+EM+   +  D FT ASV+     L  L+     
Sbjct: 203 RDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQF 262

Query: 64  HNLIIEKKIELNFILSAALIDMYSKC-GKIQMAKEVFDTVQRNDVSVWNAMISGVAIH-G 121
           H  +I+     N  + + LID+YSKC G +   ++VF+ +   D+ +WN M+SG + +  
Sbjct: 263 HGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEE 322

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              DA   F +M+     P+  +F+ +++ACS+     +G++             ++   
Sbjct: 323 FLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVD 382

Query: 182 GAMVDLLGRAGHIEEAYGLITSMT 205
            A++ +  + G++++A  L   M 
Sbjct: 383 NALIAMYSKCGNLQDARRLFDRMA 406



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 103/223 (46%), Gaps = 10/223 (4%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA-RLGALNH 59
           +P+ D+VS+N++I  +        AL  F  M    ++ D FT ++VI  C   +G +  
Sbjct: 100 IPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACCDDVGLIGQ 159

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ--RNDVSVWNAMISGV 117
              +H++ +    +    ++ AL+  Y K G +  AK VF  +   R++VS WN+MI   
Sbjct: 160 ---LHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVS-WNSMIVAY 215

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
             H   + A  +F +M    +  D  T   +LTA +    +  G ++  H +   +   Q
Sbjct: 216 GQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQF--HGQLIKTGFHQ 273

Query: 178 LEHYGA-MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             H G+ ++DL  + G        +     EPD+V+W  ++S 
Sbjct: 274 NSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSG 316



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 4/107 (3%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H+L I+  I  +   S   I +YSKCG++  A++ F  +   +V  +NA+I+  A    
Sbjct: 30  LHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESR 89

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169
              A  +F ++      PD +++  L++A + CG        F  MR
Sbjct: 90  PLIAHQLFDQIPE----PDLVSYNTLISAYADCGETAPALGLFSGMR 132



 Score = 45.4 bits (106), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 5/140 (3%)

Query: 81  ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP 140
           A+I  Y+K  +  +A ++FD +   D+  +N +IS  A  G  A A  +F+ M    +  
Sbjct: 79  AIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDM 138

Query: 141 DSITFLGLLTA-CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199
           D  T   ++TA C   GL+  G+ +   + S +     + +  A++   G+ G +++A  
Sbjct: 139 DXFTLSAVITACCDDVGLI--GQLHSVAVSSGFDSYVSVNN--ALLTYYGKNGDLDDAKR 194

Query: 200 LITSMTMEPDVVVWRALLSA 219
           +   M    D V W +++ A
Sbjct: 195 VFYGMGGIRDEVSWNSMIVA 214


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  327 bits (838), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 164/382 (42%), Positives = 241/382 (63%), Gaps = 3/382 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++V SW SMI G+V+  +  EA+  F +M  + V+ ++ T  +V+  CA LGAL+  
Sbjct: 220 MPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLG 279

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H        + N  +S  LIDMY KCG ++ A +VF+ ++   V  W+AMI G+A+H
Sbjct: 280 MRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMH 339

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G A +A  +F+ M    + P+ +TF+GLL ACSH GL+ EGR++F  M   Y I PQ+EH
Sbjct: 340 GRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEH 399

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI---VNIS 237
           YG MVDLL RAG + EA+  I +M M+P+ VVW ALL ACR  K +E+ E AI   + + 
Sbjct: 400 YGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELD 459

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
            L  G YV+LSN+Y    RW+    VR+ MK + V+K+ G S + + GV+H+F AG+ SH
Sbjct: 460 PLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESH 519

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P+ + I +    L++  + +G++P T +VL+D+ E EK   +  HSEKLAL +G++ T  
Sbjct: 520 PDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPA 579

Query: 358 GTEIRISKNLRICHDCHSWIKM 379
            T IRI KNLRIC DCHS  ++
Sbjct: 580 ETPIRIMKNLRICEDCHSAFQI 601



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 107/250 (42%), Gaps = 33/250 (13%)

Query: 9   WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
           WNS +          +A+  F  +    V PD FT +SV+  C  L  L++   +H ++ 
Sbjct: 96  WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 155

Query: 69  EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWN----------------- 111
           +     N  L   ++ +Y+ CG++  A+ +F+ + + DV  WN                 
Sbjct: 156 KVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYD 215

Query: 112 --------------AMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL 157
                         +MI+G    G A +A  +F KME   V  + +T + +L AC+  G 
Sbjct: 216 LFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGA 275

Query: 158 VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           ++ G +  ++  +R+  +  +     ++D+  + G +EEA  +   M  E  VV W A++
Sbjct: 276 LDLGMRIHEY-SNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME-ERTVVSWSAMI 333

Query: 218 SACRTFKRLE 227
                  R E
Sbjct: 334 GGLAMHGRAE 343



 Score = 45.8 bits (107), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 4/158 (2%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV--QRNDVSVWNAMISGVAIH 120
           VH  II+    L+ +    +  + +       A+++F+ V  Q+ +  VWN+ +  +A  
Sbjct: 47  VHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFECVEKQKPETFVWNSCLKALAEG 106

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
               DA  +F ++  ++V PD+ T   +L AC +   +  GR     +  +   +  L  
Sbjct: 107 DSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGR-ILHGVVEKVGFRSNLYL 165

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
              +V L    G + EA  L   M  + DVV W  +++
Sbjct: 166 QNMIVHLYASCGEMGEARLLFEKMP-QRDVVTWNIMIA 202


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  327 bits (837), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 162/411 (39%), Positives = 257/411 (62%), Gaps = 3/411 (0%)

Query: 3    DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
            DK+ +SWNS++ G  ++  F+EAL+ F  ML ++ E + FT+ S I   A L  +     
Sbjct: 627  DKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQ 686

Query: 63   VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            +H+++++   +    +S +LI +Y+K G I  A   F+ +   +V  WNAMI+G + HG 
Sbjct: 687  IHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGC 746

Query: 123  AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
              +A  +F +M++  ++P+ +TF+G+L+ACSH GLV+EG  YF+ M   + + P+ EHY 
Sbjct: 747  GMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYV 806

Query: 183  AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
             +VDLLGRAG ++ A   I  M +  D ++WR LLSAC   K +E+GE A  ++  L   
Sbjct: 807  CVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPE 866

Query: 243  D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
            D   YVL+SN+Y   ++W   +  R++MK +GV+K  G+SW+E+   +H F AGD+ HP 
Sbjct: 867  DSATYVLISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDKLHPL 926

Query: 300  AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
               I + +G L +RT   G++  +  +L +  + +K+   + HSEKLA+A+G+L      
Sbjct: 927  TNQIYEYIGHLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNI 986

Query: 360  EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             IR+ KNLR+C+DCH+WIK +S++  R IIVRD  RFH F+GG+CSC D+W
Sbjct: 987  PIRVMKNLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 115/219 (52%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D VS+NS+I G V+    D AL  F +M    ++PD  T AS++  CA +GAL+  
Sbjct: 322 MNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKG 381

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+  I+  +  + IL  +L+D+YSKC  ++ A + F T +  ++ +WN M+      
Sbjct: 382 MQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQL 441

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
              +D+  IF +M+M  ++P+  T+  +L  C+  G +  G +   H+  +   Q  +  
Sbjct: 442 DNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHV-IKTGFQLNVYV 500

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              ++D+  + G +  A  ++  +  E DVV W A+++ 
Sbjct: 501 CSVLIDMYAKYGQLALALRILRRLP-EDDVVSWTAMIAG 538



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 114/217 (52%), Gaps = 4/217 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +++V WN M+  + +     ++   FR+M    + P++FT+ S++  C  LGAL     +
Sbjct: 426 ENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQI 485

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I+   +LN  + + LIDMY+K G++ +A  +   +  +DV  W AMI+G   H + 
Sbjct: 486 HTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMF 545

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS-IQPQLEHYG 182
           ++A  +F +ME   +  D+I F   ++AC+    + +G++   H +S  +     L    
Sbjct: 546 SEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQI--HAQSYAAGFGADLSINN 603

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A++ L  R G I+EAY L      + + + W +L+S 
Sbjct: 604 ALISLYARCGRIQEAY-LAFEKIGDKNNISWNSLVSG 639



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 114/217 (52%), Gaps = 4/217 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD+V+W +MI G  +N   +EA+  F +M +S++ P  +  +SV+    ++        +
Sbjct: 224 KDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQL 283

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H L+I+        +   L+ +YS+  K+  A+ +F T+   D   +N++ISG+   G +
Sbjct: 284 HCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFS 343

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYG 182
             A  +FTKM+   + PD IT   LL+AC+  G + +G +   H +++  S    LE  G
Sbjct: 344 DRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILE--G 401

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +++DL  +   +E A+    +   E ++V+W  +L A
Sbjct: 402 SLLDLYSKCADVETAHKFFLTTETE-NIVLWNVMLVA 437



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 117/220 (53%), Gaps = 4/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P+ DVVSW +MI G+V++  F EAL+ F EM    ++ D   FAS I  CA + AL   
Sbjct: 524 LPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQG 583

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAI 119
             +H          +  ++ ALI +Y++CG+IQ A   F+ +  +N++S WN+++SG+A 
Sbjct: 584 QQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNIS-WNSLVSGLAQ 642

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
            G   +A  +F +M       +  T+   ++A +    +++G++    M  +     + E
Sbjct: 643 SGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQ-IHSMVLKTGYDSERE 701

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              +++ L  ++G I +A+     M+ E +V+ W A+++ 
Sbjct: 702 VSNSLISLYAKSGSISDAWREFNDMS-ERNVISWNAMITG 740



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 117/266 (43%), Gaps = 44/266 (16%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG-ALNHAY 61
           ++ V SWN MI  FV      +    FR ML+  + P+ +TFA V+  C     A N+  
Sbjct: 121 NRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVK 180

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            VH+       + + +++  LID+YSK G I+ AK+VF+ +   D+  W AMISG++ +G
Sbjct: 181 QVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNG 240

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACS-----------HCGLVEEG--------- 161
           L  +A  +F  M    + P       +L+A +           HC +++ G         
Sbjct: 241 LEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCN 300

Query: 162 ---------------RKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT- 205
                           + F  M SR  +      Y +++  L + G  + A  L T M  
Sbjct: 301 GLVALYSRSRKLISAERIFSTMNSRDGVS-----YNSLISGLVQQGFSDRALELFTKMQR 355

Query: 206 --MEPDVVVWRALLSACRTFKRLELG 229
             ++PD +   +LLSAC +   L  G
Sbjct: 356 DCLKPDCITVASLLSACASVGALHKG 381



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 63/128 (49%), Gaps = 14/128 (10%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +++V+SWN+MI G+ ++    EALR F EM    + P+  TF  V+  C+ +G +   
Sbjct: 726 MSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEG 785

Query: 61  -------YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNA 112
                  + +H+L+ + +  +       ++D+  + G++  A E    +    D  +W  
Sbjct: 786 LDYFESMFKIHDLVPKSEHYV------CVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRT 839

Query: 113 MISGVAIH 120
           ++S   IH
Sbjct: 840 LLSACVIH 847



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 71/173 (41%), Gaps = 7/173 (4%)

Query: 50  GCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV 109
           GC   G+L     +H  I +   +   +L  +L+D Y + G    A +VFD      V  
Sbjct: 67  GCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFS 126

Query: 110 WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169
           WN MI              +F +M    + P+  TF G+L AC    +      Y   + 
Sbjct: 127 WNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDI---AFNYVKQVH 183

Query: 170 SR---YSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           SR   Y           ++DL  + G+IE A  +   + M+ D+V W A++S 
Sbjct: 184 SRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMK-DIVTWVAMISG 235


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  327 bits (837), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 164/410 (40%), Positives = 242/410 (59%), Gaps = 3/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++VVS+  +I G+V   + ++ L  F E+    +EP++FTF+S+I  CA   AL     +
Sbjct: 272 RNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQL 331

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +++   + +  +S+ L+DMY KCG ++ A + FD +       WN+++S    HGL 
Sbjct: 332 HAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLG 391

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            DA  IF +M    V P++ITF+ LLT CSH GLVEEG  YF  M   Y + P  EHY  
Sbjct: 392 KDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSC 451

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
           ++DLLGRAG ++EA   I  M  EP+   W + L ACR     E+G++A   +V +    
Sbjct: 452 VIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKN 511

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G  VLLSN+Y   ++W+   +VR  M+   V+K  G SW+++    H F A D SHP  
Sbjct: 512 SGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRK 571

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
            AI + L +L+ + K+ G++P T+ V +D+ +  KE  L+ HSE++A+A+ ++    G  
Sbjct: 572 SAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKP 631

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           I + KNLR+C DCHS IK IS++  R IIVRD  RFH F  G CSCGDYW
Sbjct: 632 IIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 1/238 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +++VSW +MI G  +N++F EA+R F  M      P +F F+S I  CA LG++   
Sbjct: 66  MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 125

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L ++  I     + + L DMYSKCG +  A +VF+ +   D   W AMI G +  
Sbjct: 126 KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 185

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A   F KM    V  D       L AC      + GR     +  +   +  +  
Sbjct: 186 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSV-VKLGFESDIFV 244

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
             A+ D+  +AG +E A  +    +   +VV +  L+      +++E G    V + R
Sbjct: 245 GNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRR 302



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 101/213 (47%), Gaps = 5/213 (2%)

Query: 40  DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF 99
           D    A VI   A+   L     +H L+I         L+  L++MYSKCG++  A ++F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 100 DTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVE 159
           DT+ + ++  W AMISG++ +   ++A   F  M +   +P    F   + AC+  G +E
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 160 EGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            G++    +  ++ I  +L     + D+  + G + +A  +   M  + D V W A++  
Sbjct: 124 MGKQ-MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCK-DEVSWTAMIDG 181

Query: 220 CRTFKRLELGEVAIVNISRLMGGDYVLLSNMYC 252
              + ++   E A++   +++  +  +  ++ C
Sbjct: 182 ---YSKIGEFEEALLAFKKMIDEEVTIDQHVLC 211



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 61/124 (49%), Gaps = 8/124 (6%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG----ALN 58
           D   ++WNS++  F ++    +A++ F  M+   V+P+  TF S++ GC+  G     L+
Sbjct: 372 DPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLD 431

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGV 117
           + Y +         E ++   + +ID+  + G+++ AKE  + +    +   W + +   
Sbjct: 432 YFYSMDKTYGVVPGEEHY---SCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGAC 488

Query: 118 AIHG 121
            IHG
Sbjct: 489 RIHG 492


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  327 bits (837), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 162/410 (39%), Positives = 239/410 (58%), Gaps = 3/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D+V++ SMI  + +    +EAL+ + +M  + ++PD F  +S++  CA L A      +
Sbjct: 449 EDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQL 508

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   I+     +   S +L++MY+KCG I+ A   F  +    +  W+AMI G A HG  
Sbjct: 509 HVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHG 568

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            +A  +F +M    V P+ IT + +L AC+H GLV EG++YF+ M   + I+P  EHY  
Sbjct: 569 KEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYAC 628

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
           M+DLLGR+G + EA  L+ S+  E D  VW ALL A R  K +ELG+ A   + ++    
Sbjct: 629 MIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEK 688

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G +VLL+N+Y     W+    VR+ MK   V+K  G SW+E+   ++ F  GDRSH  +
Sbjct: 689 SGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRS 748

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
             I   L  L       G+    E+ + +V + EKE  LYHHSEKLA+A+G++ T PG  
Sbjct: 749 DEIYAKLDQLGDLLSKAGYSSIVEIDIHNVDKSEKEKLLYHHSEKLAVAFGLIATPPGGP 808

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           IR+ KNLRIC DCH++ K + +++ R IIVRD  RFH F+ G CSCGDYW
Sbjct: 809 IRVKKNLRICVDCHTFFKFVCKIVSREIIVRDINRFHHFKDGSCSCGDYW 858



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 113/218 (51%), Gaps = 6/218 (2%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           DVVSW+S++ G+V+N   +EAL  F EM    V+ ++FTF SV+  C+    LN    VH
Sbjct: 46  DVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVH 105

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
            + +    E +  ++  L+ MY+KCG +  ++ +F  +   +V  WNA+ S      L  
Sbjct: 106 GMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCG 165

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY--G 182
           +A  +F +M    ++P+  +   +L AC+     + GRK    M     +   L+ +   
Sbjct: 166 EAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLM---LKMGLDLDQFSAN 222

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
           A+VD+  +AG IE A  +   +   PDVV W A+++ C
Sbjct: 223 ALVDMYSKAGEIEGAVAVFQDIA-HPDVVSWNAIIAGC 259



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 114/217 (52%), Gaps = 2/217 (0%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +++VVSWN++   +V++    EA+  F+EM+ S + P++F+ + ++  CA L   +    
Sbjct: 145 ERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRK 204

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H L+++  ++L+   + AL+DMYSK G+I+ A  VF  +   DV  WNA+I+G  +H  
Sbjct: 205 IHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDC 264

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
              A  +  +M+     P+  T    L AC+  G  E GR+    +  +      L    
Sbjct: 265 NDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSL-IKMDAHSDLFAAV 323

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
            +VD+  +   +++A     SM  + D++ W AL+S 
Sbjct: 324 GLVDMYSKCEMMDDARRAYDSMP-KKDIIAWNALISG 359



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 110/215 (51%), Gaps = 2/215 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           DVVSWN++I G V +   D AL    EM  S   P+ FT +S +  CA +G       +H
Sbjct: 248 DVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLH 307

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
           + +I+     +   +  L+DMYSKC  +  A+  +D++ + D+  WNA+ISG +  G   
Sbjct: 308 SSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHL 367

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
           DA ++F+KM   ++  +  T   +L + +    ++  ++    +  +  I        ++
Sbjct: 368 DAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQ-IHTISIKSGIYSDFYVINSL 426

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +D  G+  HI+EA  +    T E D+V + ++++A
Sbjct: 427 LDTYGKCNHIDEASKIFEERTWE-DLVAYTSMITA 460



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 112/217 (51%), Gaps = 2/217 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP KD+++WN++I G+ +     +A+  F +M S  ++ ++ T ++V+   A L A+   
Sbjct: 345 MPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVC 404

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H + I+  I  +F +  +L+D Y KC  I  A ++F+     D+  + +MI+  + +
Sbjct: 405 KQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQY 464

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  ++ +M+  ++ PD      LL AC++    E+G++   H   ++     +  
Sbjct: 465 GDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHA-IKFGFMCDIFA 523

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             ++V++  + G IE+A    + +     +V W A++
Sbjct: 524 SNSLVNMYAKCGSIEDADRAFSEIP-NRGIVSWSAMI 559



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 12/127 (9%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P++ +VSW++MIGG+ ++    EALR F +ML   V P+  T  SV+  C   G +N  
Sbjct: 547 IPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEG 606

Query: 61  YWVHNLIIEKKIELNFILS------AALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAM 113
                    +K+E+ F +       A +ID+  + GK+  A E+ +++    D  VW A+
Sbjct: 607 KQYF-----EKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGAL 661

Query: 114 ISGVAIH 120
           +    IH
Sbjct: 662 LGAARIH 668



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 2/137 (1%)

Query: 82  LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141
           L+ +YSKC +   A+++ D     DV  W++++SG   +G   +A  +F +M +  V  +
Sbjct: 22  LVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVKCN 81

Query: 142 SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201
             TF  +L ACS    +  GRK    M      +        +V +  + G ++++  L 
Sbjct: 82  EFTFPSVLKACSMKRDLNMGRKVHG-MAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLF 140

Query: 202 TSMTMEPDVVVWRALLS 218
             + +E +VV W AL S
Sbjct: 141 GGI-VERNVVSWNALFS 156


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  327 bits (837), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 161/409 (39%), Positives = 247/409 (60%), Gaps = 6/409 (1%)

Query: 7   VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
           V W ++I G+V+    ++ L+ F EM  +K+  D  T+AS++  CA L +L     +H+ 
Sbjct: 408 VPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSR 467

Query: 67  IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIHGLAAD 125
           II      N    +AL+DMY+KCG I+ A ++F  +  RN VS WNA+IS  A +G    
Sbjct: 468 IIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVS-WNALISAYAQNGDGGH 526

Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
           A   F +M    + P+S++FL +L ACSHCGLVEEG +YF+ M   Y ++P+ EHY +MV
Sbjct: 527 ALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMV 586

Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG---- 241
           D+L R+G  +EA  L+  M  EPD ++W ++L++CR  K  EL   A   +  + G    
Sbjct: 587 DMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDA 646

Query: 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
             YV +SN+Y     WD+   V++ ++++G+RK    SW+E+    H F A D SHP+ +
Sbjct: 647 APYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQKTHVFSANDTSHPQTK 706

Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
            I + L  L ++ + +G+ P +   L +V EE K  +L +HSE++A+A+ ++ T  G+ I
Sbjct: 707 EITRKLDELEKQMEEQGYKPDSTCALHNVDEEVKVESLKYHSERIAIAFALISTPKGSPI 766

Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            + KNLR C+DCH+ IK+IS+++ R I VRD  RFH F  G CSC DYW
Sbjct: 767 LVMKNLRACNDCHAAIKVISKIVNREITVRDSSRFHHFTDGSCSCKDYW 815



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 4/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+ D +S+N +I     N R +E+L  FRE+  ++ +  +F FA+++   A    L   
Sbjct: 301 MPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMG 360

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H+  I        ++  +L+DMY+KC K   A  +F  +       W A+ISG    
Sbjct: 361 RQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQK 420

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR-SRYSIQPQLE 179
           GL  D   +F +M    +  DS T+  +L AC++   +  G++   H R  R      + 
Sbjct: 421 GLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQL--HSRIIRSGCLSNVF 478

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A+VD+  + G I+EA  +   M +  + V W AL+SA
Sbjct: 479 SGSALVDMYAKCGSIKEALQMFQEMPVR-NSVSWNALISA 517



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 106/227 (46%), Gaps = 2/227 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  + VV+W  +IGG+ ++ RF EA   F +M    + PD  T A+++ G     ++N  
Sbjct: 99  MVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEV 158

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH  +++   +   ++  +L+D Y K   + +A  +F  +   D   +NA+++G +  
Sbjct: 159 AQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKE 218

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   DA  +F KM+     P   TF  +LTA      +E G++    +  + +    +  
Sbjct: 219 GFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFV-VKCNFVWNVFV 277

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
             A++D   +   I EA  L   M  E D + +  L++ C    R+E
Sbjct: 278 ANALLDFYSKHDRIVEARKLFYEMP-EVDGISYNVLITCCAWNGRVE 323



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 103/219 (47%), Gaps = 2/219 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M +KD V++N+++ G+ +     +A+  F +M      P +FTFA+V+    ++  +   
Sbjct: 200 MAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFG 259

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ +++     N  ++ AL+D YSK  +I  A+++F  +   D   +N +I+  A +
Sbjct: 260 QQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWN 319

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   ++  +F +++          F  LL+  ++   +E GR+         +I   L  
Sbjct: 320 GRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVG 379

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             ++VD+  +     EA  +   +  +   V W AL+S 
Sbjct: 380 -NSLVDMYAKCDKFGEANRIFADLAHQSS-VPWTALISG 416



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++ VSWN++I  + +N     ALR F +M+ S ++P+  +F S++  C+  G +   
Sbjct: 503 MPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEG 562

Query: 61  YWVHNLIIE-KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
               N + +  K+E      A+++DM  + G+   A+++   +    D  +W+++++   
Sbjct: 563 LQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCR 622

Query: 119 IH 120
           IH
Sbjct: 623 IH 624



 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 2/145 (1%)

Query: 75  NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
           N I +  +I  Y K G +  A+ +FD++ +  V  W  +I G A H    +A  +F  M 
Sbjct: 72  NVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMC 131

Query: 135 MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194
              ++PD IT   LL+  +    V E  +   H+  +      L    +++D   +   +
Sbjct: 132 RHGMVPDHITLATLLSGFTEFESVNEVAQVHGHV-VKVGYDSTLMVCNSLLDSYCKTRSL 190

Query: 195 EEAYGLITSMTMEPDVVVWRALLSA 219
             A  L   M  E D V + ALL+ 
Sbjct: 191 GLACHLFKHMA-EKDNVTFNALLTG 214


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  327 bits (837), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 164/410 (40%), Positives = 242/410 (59%), Gaps = 3/410 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++VVS+  +I G+V   + ++ L  F E+    +EP++FTF+S+I  CA   AL     +
Sbjct: 207 RNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQL 266

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +++   + +  +S+ L+DMY KCG ++ A + FD +       WN+++S    HGL 
Sbjct: 267 HAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLG 326

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
            DA  IF +M    V P++ITF+ LLT CSH GLVEEG  YF  M   Y + P  EHY  
Sbjct: 327 KDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSC 386

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
           ++DLLGRAG ++EA   I  M  EP+   W + L ACR     E+G++A   +V +    
Sbjct: 387 VIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKN 446

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
            G  VLLSN+Y   ++W+   +VR  M+   V+K  G SW+++    H F A D SHP  
Sbjct: 447 SGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRK 506

Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
            AI + L +L+ + K+ G++P T+ V +D+ +  KE  L+ HSE++A+A+ ++    G  
Sbjct: 507 SAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKP 566

Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           I + KNLR+C DCHS IK IS++  R IIVRD  RFH F  G CSCGDYW
Sbjct: 567 IIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 616



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 1/238 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP +++VSW +MI G  +N++F EA+R F  M      P +F F+S I  CA LG++   
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L ++  I     + + L DMYSKCG +  A +VF+ +   D   W AMI G +  
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A   F KM    V  D       L AC      + GR     +  +   +  +  
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSV-VKLGFESDIFV 179

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
             A+ D+  +AG +E A  +    +   +VV +  L+      +++E G    V + R
Sbjct: 180 GNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRR 237



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 61/124 (49%), Gaps = 8/124 (6%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG----ALN 58
           D   ++WNS++  F ++    +A++ F  M+   V+P+  TF S++ GC+  G     L+
Sbjct: 307 DPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLD 366

Query: 59  HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGV 117
           + Y +         E ++   + +ID+  + G+++ AKE  + +    +   W + +   
Sbjct: 367 YFYSMDKTYGVVPGEEHY---SCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGAC 423

Query: 118 AIHG 121
            IHG
Sbjct: 424 RIHG 427


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  327 bits (837), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 161/422 (38%), Positives = 252/422 (59%), Gaps = 12/422 (2%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-------SSKVEPDKFTFASVIYGCAR 53
           M  + ++SW ++I  +VR     EA   F++ML       S +V+PD   F +++  CA 
Sbjct: 321 MEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACAD 380

Query: 54  LGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNA 112
           + AL     V        +  +  +  A++++Y KCG+I+ A+ +FD V  R DV +WNA
Sbjct: 381 VSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNA 440

Query: 113 MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY 172
           MI+  A  G + +A  +F +MEM  V PDS +F+ +L ACSH GL ++G+ YF  M + Y
Sbjct: 441 MIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEY 500

Query: 173 -SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV 231
            ++   ++H+G + DLLGR G ++EA   +  + ++PD V W +LL+ACR  + L+  + 
Sbjct: 501 RNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKE 560

Query: 232 AIVNISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIH 288
               + RL       YV LSN+Y  L++W     VR+ M ++GV+K +G S +E+   +H
Sbjct: 561 VANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMH 620

Query: 289 QFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLAL 348
            F  GD +HP  + I + L  L  + K  G++P T++VL  V E+EKE  L+ HSE+LA+
Sbjct: 621 DFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSERLAI 680

Query: 349 AYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGD 408
           A G++ T  GT +R++KNLR+C DCH+  K+IS++  R I+VRD  RFH F+ G CSC D
Sbjct: 681 ALGLISTPLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSCQD 740

Query: 409 YW 410
           YW
Sbjct: 741 YW 742



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 117/227 (51%), Gaps = 11/227 (4%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +DVVSWN M+  +V N R  +A++ ++ M   ++ PDK T+ S++  C+    +     +
Sbjct: 226 RDVVSWNIMLSTYVHNDRGKDAIQLYQRM---QLRPDKVTYVSLLSACSSAEDVGLGRVL 282

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  I+  ++E N I+  AL+ MY+KCG    A+ VFD +++  +  W  +IS      L 
Sbjct: 283 HKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLV 342

Query: 124 ADASAIFTKMEMFN-------VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
           A+A  +F +M           V PD++ F+ +L AC+    +E+G K      +   +  
Sbjct: 343 AEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQG-KMVSEQAASCGLSS 401

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTF 223
                 A+V+L G+ G IEEA  +  ++   PDV +W A+++    F
Sbjct: 402 DKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQF 448



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 121/251 (48%), Gaps = 13/251 (5%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  +++ SW  ++  F  + +  E LR    M    V PD  TF + +  C    +L   
Sbjct: 18  LEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESLRDG 77

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN-DVSVWNAMISGVAI 119
             +H ++++ ++E++  +S AL++MY KCG +  AK VF  ++R  +V  W+ M    A+
Sbjct: 78  IRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHAL 137

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG   +A   F  M +  +       + +L+ACS   LV++GR     + +    + +L 
Sbjct: 138 HGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCI-ALSGFESELL 196

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTME-PDVVVWRALLS----------ACRTFKRLEL 228
              A++ + GR G +EEA  +  +M     DVV W  +LS          A + ++R++L
Sbjct: 197 VANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRMQL 256

Query: 229 GEVAIVNISRL 239
               +  +S L
Sbjct: 257 RPDKVTYVSLL 267



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 65/136 (47%), Gaps = 3/136 (2%)

Query: 85  MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSIT 144
           MY+ C     AK  FD +++ ++  W  +++  AI G + +      +M    V PD++T
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 145 FLGLLTACSHCGLVEEG-RKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
           F+  L +C     + +G R +   + SR  I P++ +  A++++  + G +  A  +   
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSN--ALLNMYKKCGSLSHAKRVFAK 118

Query: 204 MTMEPDVVVWRALLSA 219
           M    +V+ W  +  A
Sbjct: 119 MERTRNVISWSIMAGA 134


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  327 bits (837), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 167/425 (39%), Positives = 249/425 (58%), Gaps = 24/425 (5%)

Query: 10  NSMIGGFVRNARFDEALRFF-----REMLSSKVEPDKF----------------TFASVI 48
           N+++  +  +   +EA R F     R M+    E   F                TFAS+I
Sbjct: 398 NALVSMYAESGCMEEARRVFNQLYERSMIPCITEGRDFPLDHRIVRMDVGISSSTFASLI 457

Query: 49  YGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS 108
              A +G L     +H + ++     +  +S +L+ MYS+CG ++ A   F+ ++  +V 
Sbjct: 458 SAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVI 517

Query: 109 VWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM 168
            W +MISG+A HG A  A ++F  M +  V P+ +T++ +L+ACSH GLV EG++YF  M
Sbjct: 518 SWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSM 577

Query: 169 RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLEL 228
           +  + + P++EHY  MVDLL R+G ++EA   I  M ++ D +VW+ LL ACR+   +E+
Sbjct: 578 QRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADALVWKTLLGACRSHDNIEV 637

Query: 229 GEVAIVNISRLMGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAG 285
           GE+   N+  L   D   YVLLSN+Y     WD    +R  M+   + K  G SW+E+  
Sbjct: 638 GEITAKNVVELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVEN 697

Query: 286 VIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEK 345
             H+F+AGD SHP AQ I   L +L+++ K  G++P T +VL D+S+E KE  L  HSEK
Sbjct: 698 TTHEFRAGDTSHPRAQDIYGKLDTLVRQIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEK 757

Query: 346 LALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCS 405
           +A+A+G++ TS    IRI KNLR+C DCHS IK +S+  RR II+RD  RFHR + G CS
Sbjct: 758 IAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKDGECS 817

Query: 406 CGDYW 410
           CG+YW
Sbjct: 818 CGEYW 822



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 104/200 (52%), Gaps = 7/200 (3%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K VV W  +I  +V+    +EA+  F + L    EPD++T +S+I  C  LG++     
Sbjct: 216 EKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQ 275

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCG---KIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
           +H+L +   +  +  +S  L+DMY+K      +  A +VF+ + +NDV  W A+ISG   
Sbjct: 276 LHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQ 335

Query: 120 HGLAAD-ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            G+  +   A+F +M   ++ P+ IT+  +L +C+     + GR+   H+    S Q   
Sbjct: 336 SGVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQVHAHVIK--SNQASA 393

Query: 179 EHYG-AMVDLLGRAGHIEEA 197
              G A+V +   +G +EEA
Sbjct: 394 HTVGNALVSMYAESGCMEEA 413



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 114/249 (45%), Gaps = 34/249 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNA-RFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           MP  DV+SW ++I G+V++  + ++ +  F EML+  ++P+  T++S++  CA +   + 
Sbjct: 318 MPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDS 377

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT------------------ 101
              VH  +I+        +  AL+ MY++ G ++ A+ VF+                   
Sbjct: 378 GRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIPCITEGRDFPL 437

Query: 102 ---VQRNDV----SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
              + R DV    S + ++IS  A  G+      +           D      L++  S 
Sbjct: 438 DHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSR 497

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM---EPDVV 211
           CG +E+  + F+ ++ R  I      + +M+  L + G+ E A  L   M +   +P+ V
Sbjct: 498 CGYLEDACRSFNELKDRNVIS-----WTSMISGLAKHGYAERALSLFHDMILTGVKPNDV 552

Query: 212 VWRALLSAC 220
            + A+LSAC
Sbjct: 553 TYIAVLSAC 561



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 15/224 (6%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D+VSW +M     RN     +L    EML S + P+ +T  +  + C       H  + 
Sbjct: 114 RDIVSWTAMASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHAC-----FPHELYC 168

Query: 64  HNLIIEK----KIEL---NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
               +      K+ L   +  + +ALIDM ++ G +  A++VFD +    V VW  +IS 
Sbjct: 169 LVGGVVLGLVHKMGLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISR 228

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
                 A +A  +F         PD  T   +++AC+  G V  G +    +  R  +  
Sbjct: 229 YVQGECAEEAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQ-LHSLALRMGLAS 287

Query: 177 QLEHYGAMVDLLGRA--GHIEEAYGLITSMTMEPDVVVWRALLS 218
                  +VD+  ++  G   +    +     + DV+ W AL+S
Sbjct: 288 DACVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALIS 331



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + D++V+SW SMI G  ++   + AL  F +M+ + V+P+  T+ +V+  C+ +G +   
Sbjct: 511 LKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREG 570

Query: 61  Y-WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             +  ++  +  +       A ++D+ ++ G ++ A E  + +  + D  VW  ++    
Sbjct: 571 KEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADALVWKTLLGACR 630

Query: 119 IH 120
            H
Sbjct: 631 SH 632



 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 71/149 (47%), Gaps = 3/149 (2%)

Query: 72  IELNFILSAALIDMYSKCGKIQMAKEVFDTVQR-NDVSVWNAMISGVAIHGLAADASAIF 130
           ++ + +++ +L+ +YS+CG +  A+ VFD ++   D+  W AM S +A +G    +  + 
Sbjct: 80  LDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLI 139

Query: 131 TKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG-AMVDLLG 189
            +M    +LP++ T      AC    L          +  +  +       G A++D+L 
Sbjct: 140 GEMLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMGLWGTDVAVGSALIDMLA 199

Query: 190 RAGHIEEAYGLITSMTMEPDVVVWRALLS 218
           R G +  A  +   + +E  VVVW  L+S
Sbjct: 200 RNGDLASARKVFDGL-IEKTVVVWTLLIS 227


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  327 bits (837), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 162/416 (38%), Positives = 255/416 (61%), Gaps = 6/416 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
           +  +D + WN+MI  +V+N     A++ FREM  ++ ++PD  TF +V+  CA LG L+ 
Sbjct: 403 LGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE 462

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  I E ++E N +++  LI+MY++CG ++ A+ +F   +   V  W AM++  + 
Sbjct: 463 VKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQ 522

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           +G  A+A  +F +M++  V PD +T+  +L  C+H G +E+G +YF  M   + + P  +
Sbjct: 523 YGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTAD 582

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           H+ AMVDLLGR+G + +A  L+ SM  EPD V W   L+ACR   +LELGE A   +  L
Sbjct: 583 HFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYEL 642

Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
                  Y+ +SN+Y     W+   +VR+ M+++G++K  G S++E+ G +H+F +G + 
Sbjct: 643 DPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKY 702

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT- 355
           HP    I + L  L    ++ G++P T+ VL DVSE EKE  L +HSEK+A+A+G++ + 
Sbjct: 703 HPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSR 762

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEG-GLCSCGDYW 410
             G  IR+ KNLR+C DCH+  K I+R+  R II+RD  RFHRF   G CSCGDYW
Sbjct: 763 GSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIILRDCNRFHRFSSDGKCSCGDYW 818



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 129/260 (49%), Gaps = 37/260 (14%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D+VSWN MIG +V+N  F EAL  ++++     +  K TF S++  C+ + AL   
Sbjct: 268 MKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQG 327

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+ I+E+ ++    ++ AL++MY+KCG ++ A++VF+ ++  D   W+ +I   A +
Sbjct: 328 RLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASN 387

Query: 121 GLAADA------------------SAIFTK----------MEMFNVL-------PDSITF 145
           G   DA                  +A+ T           M++F  +       PD++TF
Sbjct: 388 GYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTF 447

Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
           + +L AC+  G + E +     + S   ++  +     ++++  R G +EEA  L  +  
Sbjct: 448 IAVLEACASLGRLSEVKALHAQI-SESELESNVVVTNTLINMYARCGSLEEAERLFAA-A 505

Query: 206 MEPDVVVWRALLSACRTFKR 225
            E  VV W A+++A   + R
Sbjct: 506 KEKTVVSWTAMVAAFSQYGR 525



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 112/219 (51%), Gaps = 3/219 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  +D  SWN++I    ++  +  ALR F+EM    ++P+  T+ +VI G +    L   
Sbjct: 168 LQTRDETSWNAVILAHSQSGDWSGALRIFKEM-KCDMKPNSTTYINVISGFSTPEVLPEG 226

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  I+    + + +++ ALI+MY KCG    A+EVFD +++ D+  WN MI     +
Sbjct: 227 RKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQN 286

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G   +A  ++ K++M        TF+ +L ACS    + +GR    H+  R  +  ++  
Sbjct: 287 GDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILER-GLDSEVAV 345

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             A+V++  + G +EEA  +  +M    D V W  L+ A
Sbjct: 346 ATALVNMYAKCGSLEEARKVFNAMK-NRDAVAWSTLIGA 383



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 109/214 (50%), Gaps = 6/214 (2%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++VVSWN+MI  + +N    EAL  +  M    +  D  TF SV+  C+   +L     +
Sbjct: 73  RNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS---SLAQGREI 129

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           HN +    ++    L+ AL+ MY++ G +  AK +F ++Q  D + WNA+I   +  G  
Sbjct: 130 HNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDW 189

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
           + A  IF +M+  ++ P+S T++ +++  S   ++ EGRK    + +       L    A
Sbjct: 190 SGALRIFKEMKC-DMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVAN-GFDSDLVVATA 247

Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
           ++++ G+ G   EA  +   M  + D+V W  ++
Sbjct: 248 LINMYGKCGSSHEAREVFDKMK-KRDMVSWNVMI 280



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 11/186 (5%)

Query: 38  EPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE 97
           +PD  TF +V+  C+  G +     +H  I   + E + ++  ALI MY KC  +  A+ 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 98  VFDTV---QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
           VF+++   QRN VS WNAMI+  A +G + +A  ++ +M +  +  D +TF+ +L ACS 
Sbjct: 64  VFESMDWRQRNVVS-WNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS 122

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVVW 213
              + +GR+   H R  YS     +    A+V +  R G + +A  +  S+    D   W
Sbjct: 123 ---LAQGREI--HNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTR-DETSW 176

Query: 214 RALLSA 219
            A++ A
Sbjct: 177 NAVILA 182


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  327 bits (837), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 161/411 (39%), Positives = 241/411 (58%), Gaps = 5/411 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           KD ++WN +I GF ++  + +AL  F +M  +  + + FTF S I   A L  +     V
Sbjct: 511 KDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQV 570

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIHGL 122
           H   ++        ++ ALI +Y KCG I+ AK +F  +  RN+VS WN +I+  + HG 
Sbjct: 571 HGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVS-WNTIITSCSQHGR 629

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             +A  +F +M+   + P+ +TF+G+L ACSH GLVEEG  YF  M + Y + P  +HY 
Sbjct: 630 GLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYA 689

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG 242
            +VD+LGRAG ++ A   +  M +  + ++WR LLSAC+  K +E+GE+A  ++  L   
Sbjct: 690 CVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPH 749

Query: 243 D---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
           D   YVLLSN Y    +W   + VR++MK +G+RK  G+SW+E+   +H F  GDR HP 
Sbjct: 750 DSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPL 809

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           +  I K L  L  R    G+      +  +  +E+K+   + HSEKLA+A+G++   P  
Sbjct: 810 SDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCI 869

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            +R+ KNLR+C DCHSW+K  S + RR I++RD  RFH F  G CSCGDYW
Sbjct: 870 PLRVIKNLRVCDDCHSWMKCTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 133/272 (48%), Gaps = 15/272 (5%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           +VV WN M+  + + +   ++   F +M ++ + P++FT+  ++  C   G +     +H
Sbjct: 310 NVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIH 369

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
           +L I+   E +  +S  LIDMYSK G +  A+++ + +++ DV  W +MI+G   H    
Sbjct: 370 SLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCE 429

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD-HMRSRYS-IQPQLEHYG 182
           +A A F +M+   V PD+I   GL +A S C  ++  R+    H R   S     +  + 
Sbjct: 430 EALATFKEMQDCGVWPDNI---GLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWN 486

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL--M 240
            +V+L  R G  EEA+ L   +    D + W  L+S    F +  L + A++   ++   
Sbjct: 487 TLVNLYARCGRSEEAFSLFREIE-HKDEITWNGLISG---FGQSRLYKQALMVFMKMGQA 542

Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGV 272
           G  Y    N++ ++       N+ +I + K V
Sbjct: 543 GAKY----NVFTFISAISALANLADIKQGKQV 570



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 113/226 (50%), Gaps = 4/226 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  +DVVSW SMI G+V++   +EAL  F+EM    V PD    AS    CA + A+   
Sbjct: 407 LEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQG 466

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  +       +  +   L+++Y++CG+ + A  +F  ++  D   WN +ISG    
Sbjct: 467 LQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQS 526

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLE 179
            L   A  +F KM       +  TF+  ++A ++   +++G++   H R+ +     + E
Sbjct: 527 RLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQV--HGRAVKTGHTSETE 584

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKR 225
              A++ L G+ G IE+A  + + M++  + V W  ++++C    R
Sbjct: 585 VANALISLYGKCGSIEDAKMIFSEMSLRNE-VSWNTIITSCSQHGR 629



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 113/215 (52%), Gaps = 2/215 (0%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
           D V++N++I G  +    + AL+ F EM  S + PD  T AS++  CA +G L     +H
Sbjct: 209 DRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLH 268

Query: 65  NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
           + +++  +  ++I   +L+D+Y KCG I+ A ++F+   R +V +WN M+         A
Sbjct: 269 SYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLA 328

Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
            +  IF +M+   + P+  T+  +L  C+  G +E G +    +  +   +  +   G +
Sbjct: 329 KSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQ-IHSLSIKNGFESDMYVSGVL 387

Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           +D+  + G +++A  ++  M  + DVV W ++++ 
Sbjct: 388 IDMYSKYGCLDKARKIL-EMLEKRDVVSWTSMIAG 421



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 110/220 (50%), Gaps = 4/220 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +  +D VSW +M+ G+ ++    EA R + +M  + V P  +  +SV+  C +       
Sbjct: 104 LSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQG 163

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H  + ++       +  ALI +Y   G  ++A+ VF  +   D   +N +ISG A  
Sbjct: 164 RMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQC 223

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
           G    A  IF +M++  + PD +T   LL AC+  G +++G++   + +++  S     E
Sbjct: 224 GHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITE 283

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             G+++DL  + G IE A+  I ++    +VV+W  +L A
Sbjct: 284 --GSLLDLYVKCGDIETAHD-IFNLGDRTNVVLWNLMLVA 320



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 53/100 (53%)

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
           +H   + + +  + ++   LID+Y+K G +  A++VF  +   D   W AM+SG A  GL
Sbjct: 65  IHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGL 124

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR 162
             +A  ++++M    V+P       +L+AC+   L  +GR
Sbjct: 125 GKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGR 164


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  327 bits (837), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 159/371 (42%), Positives = 232/371 (62%), Gaps = 3/371 (0%)

Query: 43  TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV 102
           TFAS+I   A +G L     +H + ++     +  +S +L+ MYS+CG ++ A   F+ +
Sbjct: 452 TFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNEL 511

Query: 103 QRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR 162
           +  +V  W +MISG+A HG A  A ++F  M +  V P+ +T++ +L+ACSH GLV EG+
Sbjct: 512 KDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGK 571

Query: 163 KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRT 222
           +YF  M+  + + P++EHY  MVDLL R+G ++EA   I  M ++ D +VW+ LL ACR+
Sbjct: 572 EYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKADALVWKTLLGACRS 631

Query: 223 FKRLELGEVAIVNISRLMGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKS 279
              +E+GE+A  N+  L   D   YVLLSN+Y     WD    +R  M+   + K  G S
Sbjct: 632 HDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLS 691

Query: 280 WLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNL 339
           W+E+    H+F+AGD SHP AQ I   L +L+   K  G++P T +VL D+S+E KE  L
Sbjct: 692 WMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVGEIKGMGYVPDTSIVLHDMSDELKEQYL 751

Query: 340 YHHSEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRF 399
             HSEK+A+A+G++ TS    IRI KNLR+C DCHS IK +S+  RR II+RD  RFHR 
Sbjct: 752 LQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRM 811

Query: 400 EGGLCSCGDYW 410
           + G CSCG+YW
Sbjct: 812 KDGECSCGEYW 822



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 104/200 (52%), Gaps = 7/200 (3%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           +K VV W  +I  +V+    +EA+  F + L    EPD++T +S+I  C  LG++     
Sbjct: 216 EKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQ 275

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCG---KIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
           +H+L +      +  +S  L+DMY+K      +  A +VF+ +++NDV  W A+ISG   
Sbjct: 276 LHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQ 335

Query: 120 HGLAAD-ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
            G+  +    +F +M   ++ P+ IT+  +L AC++    + GR+   H+    S Q   
Sbjct: 336 SGVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSGRQVHAHVIK--SNQAAA 393

Query: 179 EHYG-AMVDLLGRAGHIEEA 197
              G A+V +   +G +EEA
Sbjct: 394 HTVGNALVSMYAESGCMEEA 413



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 113/249 (45%), Gaps = 34/249 (13%)

Query: 1   MPDKDVVSWNSMIGGFVRNA-RFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
           M   DV+SW ++I G+V++  + ++ +  F EML+  ++P+  T++S++  CA +   + 
Sbjct: 318 MRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDS 377

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT------------------ 101
              VH  +I+        +  AL+ MY++ G ++ A+ VF+                   
Sbjct: 378 GRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMISCITEGRDAPL 437

Query: 102 ---VQRNDV----SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
              + R D+    S + ++IS  A  G+      +           D      L++  S 
Sbjct: 438 DHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSR 497

Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM---EPDVV 211
           CG +E+  + F+ ++ R  I      + +M+  L + G+ E A  L   M +   +P+ V
Sbjct: 498 CGYLEDACRSFNELKDRNVIS-----WTSMISGLAKHGYAERALSLFHDMILTGVKPNDV 552

Query: 212 VWRALLSAC 220
            + A+LSAC
Sbjct: 553 TYIAVLSAC 561



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 98/225 (43%), Gaps = 17/225 (7%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           +D+VSW +M     RN    E+L    EML S + P+ +T  +V + C       H  + 
Sbjct: 114 RDIVSWTAMASCLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHAC-----FPHELYC 168

Query: 64  HNLIIEK----KIEL---NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
               +      K+ L   +  + +ALIDM ++ G +  A++VFD +    V VW  +IS 
Sbjct: 169 LVGGVVLGLVHKMGLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISR 228

Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176
                 A +A  IF         PD  T   +++AC+  G V  G +    +  R     
Sbjct: 229 YVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQ-LHSLALRMGFAS 287

Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSM---TMEPDVVVWRALLS 218
                  +VD+  ++ +IE+A      +     + DV+ W AL+S
Sbjct: 288 DACVSCGLVDMYAKS-NIEQAMDYANKVFERMRKNDVISWTALIS 331



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           + D++V+SW SMI G  ++   + AL  F +M+ + V+P+  T+ +V+  C+ +G +   
Sbjct: 511 LKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREG 570

Query: 61  Y-WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
             +  ++  +  +       A ++D+ ++ G ++ A E  + +  + D  VW  ++    
Sbjct: 571 KEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKADALVWKTLLGACR 630

Query: 119 IH 120
            H
Sbjct: 631 SH 632



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 73/149 (48%), Gaps = 3/149 (2%)

Query: 72  IELNFILSAALIDMYSKCGKIQMAKEVFDTVQR-NDVSVWNAMISGVAIHGLAADASAIF 130
           ++ + +++ +L+ +YS+CG +  A+ VFD ++   D+  W AM S +A +G   ++  + 
Sbjct: 80  LDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLI 139

Query: 131 TKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI-QPQLEHYGAMVDLLG 189
            +M    +LP++ T   +  AC    L          +  +  +    +    A++D+L 
Sbjct: 140 GEMLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGLWGTDIAVGSALIDMLA 199

Query: 190 RAGHIEEAYGLITSMTMEPDVVVWRALLS 218
           R G +  A  +   + +E  VVVW  L+S
Sbjct: 200 RNGDLASARKVFDGL-IEKTVVVWTLLIS 227


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  327 bits (837), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 166/414 (40%), Positives = 244/414 (58%), Gaps = 4/414 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE-PDKFTFASVIYGCARLGALNH 59
           MP   + +W ++I GFV+   +  A+  F EM    +   D F  A+VI G A L AL  
Sbjct: 195 MPAHGLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLAALVL 254

Query: 60  AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
              +H  ++      + I+  AL+DMYSKC  I  A+EVF+ +   DV  W  ++ G A 
Sbjct: 255 GRQLHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGITVRDVISWTTILVGEAQ 314

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           HG A +  A++ +M +  + P+ +TF+GL+ ACSH GLV++GR+ FD M+  Y ++P ++
Sbjct: 315 HGRAEEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQ 374

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
           HY   +DLL R+G++ EA  LIT+M  EPD   W ALLSAC+     ++      N+  L
Sbjct: 375 HYTCYLDLLSRSGYLSEAEKLITTMPYEPDEATWGALLSACKKHNDTQMCLRVADNLLEL 434

Query: 240 MGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
              D   Y+LLSN+Y    +WD+   VR+IM +  +RK  G SW+E       F AG+  
Sbjct: 435 RPKDPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKVPGYSWVEAGRESRIFHAGEVP 494

Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
               + I   L  L+   +  G++P T  V+ D+ E EKE +L+ HSE+LA+A+GILK+ 
Sbjct: 495 LDVGEEITCFLEELVSEMRKRGYVPDTSSVMHDLEEHEKEQHLFVHSERLAVAFGILKSP 554

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           PG+ IR+ KNLR+C DCH+ +K IS + +R IIVRD  RFH FE G CSC ++W
Sbjct: 555 PGSVIRVVKNLRVCGDCHTVMKFISAIAQRKIIVRDASRFHHFEDGNCSCSEFW 608



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 1/156 (0%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNHA 60
           P +D+  +++++     ++  +  L   R MLS   + PD F  AS+     RL +L   
Sbjct: 63  PRRDLHLYSALLAAVSHSSDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLG 122

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H          + ++ ++LIDMY KCG  Q A++VFD++   +  VW A+ISG A +
Sbjct: 123 RQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASN 182

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
           G   +A  +F  M    +   +    G + A ++ G
Sbjct: 183 GCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTG 218


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 161/413 (38%), Positives = 246/413 (59%), Gaps = 4/413 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P++D VS  ++I G+ +    DEAL  FR++ SS ++ +  TF +++   + L +LN+ 
Sbjct: 203 LPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYG 262

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH LI+ K++    +L  +LIDMYSKCGK+  ++ VFD + +     WNAM+ G   H
Sbjct: 263 KQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRH 322

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
           G+  +   +F  M    V PDS+T L +L+ CSH GLV+EG   FD +    +    + H
Sbjct: 323 GIGQEVVQLFRTMTE-EVKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGH 381

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
           YG ++DLLGR+G +++A  LI  M  EP   +W +LL ACR    + +GEV    ++++ 
Sbjct: 382 YGCVIDLLGRSGQLQKALDLIEHMPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDME 441

Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
               G+YV+LSN+Y     W     VR++M +  V K   KSW+ L  VIH F + +R H
Sbjct: 442 PGNAGNYVILSNIYAAAGMWKDVFRVRKLMLENTVTKEPAKSWIILDKVIHTFHSSERFH 501

Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
           P  + I+  +  +    K+ GF+P    VL DV +E+KE  L  HSEKLA+ +G++ T P
Sbjct: 502 PRKKDINAKIKEVYVDVKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPP 561

Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
           G  I++ KNLRIC DCH++ K +S++  R I +RD+ RFH  + G C+CGDYW
Sbjct: 562 GLTIQVMKNLRICVDCHNFAKFVSKVYGREISLRDKNRFHLLKDGACTCGDYW 614



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 123/257 (47%), Gaps = 42/257 (16%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP+++VVSW +MI G+ ++ R  EAL  F  ML +  + ++FT A+V+  C    ++   
Sbjct: 102 MPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQV 161

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH+L+++   E +  + ++L+DMY K G IQ A++VFD +   D     A+ISG A  
Sbjct: 162 EQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQL 221

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTAC---------------------------- 152
           GL  +A  +F ++    +  + +TF  LLT+                             
Sbjct: 222 GLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQ 281

Query: 153 -------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
                  S CG +   R+ FD+M  R +I      + AM+   GR G  +E   L  +MT
Sbjct: 282 NSLIDMYSKCGKLLYSRRVFDNMPQRSAIS-----WNAMLMGYGRHGIGQEVVQLFRTMT 336

Query: 206 ME--PDVVVWRALLSAC 220
            E  PD V   A+LS C
Sbjct: 337 EEVKPDSVTLLAVLSGC 353



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 12/206 (5%)

Query: 21  RFDEALRFFREMLSSKVEPDK----FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNF 76
           R+D ++   R   SS   P        + + I  C    AL     VH  +++ +     
Sbjct: 17  RWDMSVVAARHAASSLAVPGADARFHDYDAAITACVERQALGEGRQVHAHMVKARYRPPV 76

Query: 77  ILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMF 136
            L+  LI +Y +CG +  A+ V D +   +V  W AMISG +  G  A+A  +F +M   
Sbjct: 77  YLATRLIILYVRCGALDDARNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRA 136

Query: 137 NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS---RYSIQPQLEHYGAMVDLLGRAGH 193
               +  T   +LT+C     V +  +  + + S   + + +  +    +++D+ G++G+
Sbjct: 137 GCKANEFTLATVLTSCP----VHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGN 192

Query: 194 IEEAYGLITSMTMEPDVVVWRALLSA 219
           I+EA  +   M  E D V   A++S 
Sbjct: 193 IQEARKVF-DMLPERDTVSCTAIISG 217


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 167/412 (40%), Positives = 242/412 (58%), Gaps = 5/412 (1%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           K+ VSW S++  +V+N   ++A   +       VE   F  +SV+  CA +  L     +
Sbjct: 273 KNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSI 332

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H   ++  +E N  + +AL+DMY KCG I+ +++ FD +   ++   N++I G A  G  
Sbjct: 333 HAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQV 392

Query: 124 ADASAIFTKMEMFNV--LPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
             A A+F  M        P+ +TF+ LL+ACS  G VE G K FD M+S Y I+P  EHY
Sbjct: 393 DMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGAEHY 452

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM- 240
             +VD+LGRAG +E+A+  I  M ++P + VW AL +ACR   +  LG +A  N+ +L  
Sbjct: 453 SCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQNACRMHGKPHLGILAAENLFKLDP 512

Query: 241 --GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
              G++VLLSN +    RW  A  VRE MK  G++K  G SW+ +   +H F+A DRSH 
Sbjct: 513 KDSGNHVLLSNTFAAAGRWAEANTVREEMKGVGIKKGAGYSWITVKNQVHAFQAKDRSHK 572

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
             + I  +L  L  + ++ G+ P  +L L D+ EEEK   + HHSEKLALA+G++     
Sbjct: 573 MNKEIQTMLTKLRNKMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLVALPLS 632

Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
             IRI+KNLRIC DCHS+ K +S  ++R IIVRD  RFHRF+ G+CSC DYW
Sbjct: 633 VPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 99/218 (45%), Gaps = 2/218 (0%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P ++VVSW S++ G  +N  F  AL  F EM    V P+ FTF  V    A L       
Sbjct: 69  PARNVVSWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGK 128

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H L ++    L+  +  +  DMY K      A+++FD +   ++  WNA IS     G
Sbjct: 129 QIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDG 188

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              +A   F +       P+SITF G L ACS   L++ G +    +  R      +  Y
Sbjct: 189 RPKEAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQ-MHGLVFRSGFDTDVSVY 247

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             ++D  G+   I  +  +   M M+ + V W +L++A
Sbjct: 248 NGLIDFYGKCKQIRSSEIIFAEMGMK-NAVSWCSLVAA 284



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 98/217 (45%), Gaps = 2/217 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P++++ +WN+ I   V + R  EA+  F E      +P+  TF   +  C+    L+  
Sbjct: 169 IPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLG 228

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L+     + +  +   LID Y KC +I+ ++ +F  +   +   W ++++    +
Sbjct: 229 MQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQN 288

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                AS ++ +     V         +L+AC+    +E GR    H   +  ++  +  
Sbjct: 289 HEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSIHAHA-VKACVERNIFV 347

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             A+VD+ G+ G IE++      M  E ++V   +L+
Sbjct: 348 GSALVDMYGKCGCIEDSEQAFDEMP-EKNLVTLNSLI 383



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 4/125 (3%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKV--EPDKFTFASVIYGCARLGALN 58
           MP+K++V+ NS+IGG+    + D AL  F +M        P+  TF S++  C+R GA+ 
Sbjct: 371 MPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVE 430

Query: 59  HAYWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISG 116
           +   + + +     IE      + ++DM  + G ++ A E    +  +  +SVW A+ + 
Sbjct: 431 NGMKIFDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQNA 490

Query: 117 VAIHG 121
             +HG
Sbjct: 491 CRMHG 495



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 82/215 (38%), Gaps = 47/215 (21%)

Query: 53  RLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA 112
           RLG + HA  V  L           L+  LI+MYSK    + A+ V       +V  W +
Sbjct: 23  RLGRVVHARIVKTLDSPPPP----FLANYLINMYSKLDHPESARLVLRLTPARNVVSWTS 78

Query: 113 MISGVAIHGLAADASAIFTKMEMFNVLPDSITF--------------------------- 145
           ++SG+A +G  + A   F +M    V P+  TF                           
Sbjct: 79  LVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQIHALAVKCG 138

Query: 146 --LGLLTACS----HCG--LVEEGRKYFDHMRSRYSIQPQLEHYGAMVD---LLGRAGHI 194
             L +   CS    +C   L ++ RK FD +  R      LE + A +      GR    
Sbjct: 139 RILDVFVGCSAFDMYCKTRLRDDARKLFDEIPER-----NLETWNAYISNSVTDGRPKEA 193

Query: 195 EEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG 229
            EA+     +  +P+ + +   L+AC     L+LG
Sbjct: 194 IEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLG 228


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 174/414 (42%), Positives = 242/414 (58%), Gaps = 7/414 (1%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P  DVVSW S+I G V+N +F+  L  F E+L S  +PD+FT + ++  CA L A+    
Sbjct: 312 PKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGE 371

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H   I+  I    I+  + I MY+KCG I  A   F   +  D+  W+ MIS  A HG
Sbjct: 372 QIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHG 431

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
            A +A  +F  M+   + P+ ITFLG+L ACSH GLVEEG +YF+ M+  + I P ++H 
Sbjct: 432 CAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHS 491

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE-VA--IVNISR 238
             +VDLLGRAG + EA   I     E D V+WR+LLSACR  K  + G+ VA  ++ +  
Sbjct: 492 ACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEP 551

Query: 239 LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
                YVLL N+Y        A  +R +MK +GV+K  G SW+E+  V+H F AGDRSHP
Sbjct: 552 EAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHP 611

Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGN--LYHHSEKLALAYGILKTS 356
            +Q I   L  +++  K   ++   E ++ D SE + + N  + +HSEKLA+ +GI+   
Sbjct: 612 NSQVIYVQLEEMLEEIKKLDYI--DEKLVSDASEPKHKDNSMVSYHSEKLAVTFGIISLP 669

Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
               +R+ KNLR C  CH  +K+ SRL  R II+RD IRFHRF  G CSCGDYW
Sbjct: 670 RSAPVRVMKNLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRDGSCSCGDYW 723



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 108/220 (49%), Gaps = 2/220 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           MP ++VVSWNS+I G+ +   + E +  F+E   S +  DKFTF++ +  C R   L   
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H LI    +    +L+ +LIDMY KCG+I  A+ VF++    D   WN++I+G    
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTAC-SHCGLVEEGRKYFDHMRSRYSIQPQLE 179
           G   +   +  KM    +  +S      L AC S+     E  K       +  +   + 
Sbjct: 121 GSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVV 180

Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
              A++D   + G +E+A  +   M  +P+VV++ A+++ 
Sbjct: 181 VGTALLDTYAKIGDLEDATKIFKLMP-DPNVVMYNAMIAG 219



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 113/228 (49%), Gaps = 15/228 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARF-----DEALRFFREMLSSKVEPDKFTFASVIYGCARLG 55
           MPD +VV +N+MI GF++         +EA+  F EM S  ++P +FTF+S++  C+ + 
Sbjct: 205 MPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIE 264

Query: 56  ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
           A      +H  I +  ++ +  +  AL+++YS  G I+   + F +  + DV  W ++I 
Sbjct: 265 AFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIV 324

Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
           G   +G       +F ++      PD  T   +L+AC++   V+ G +        Y+I+
Sbjct: 325 GHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQI-----HAYAIK 379

Query: 176 PQLEHY----GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             + ++     + + +  + G I+ A  +    T  PD+V W  ++S+
Sbjct: 380 TGIGNFTIIQNSQICMYAKCGDIDSA-NMTFKETKNPDIVSWSVMISS 426



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 9/220 (4%)

Query: 5   DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCAR--LGALNHAYW 62
           D VSWNS+I G+VR    DE LR   +ML   +  + +   S +  C      ++     
Sbjct: 106 DSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKM 165

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG-----V 117
           +H   ++  ++L+ ++  AL+D Y+K G ++ A ++F  +   +V ++NAMI+G      
Sbjct: 166 LHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMET 225

Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
                A +A  +F +M+   + P   TF  +L ACS     E G++    +  +Y++Q  
Sbjct: 226 MADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIF-KYNLQSD 284

Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
                A+V+L   +G IE+      S T + DVV W +L+
Sbjct: 285 EFIGNALVELYSLSGSIEDGLKCFHS-TPKLDVVSWTSLI 323


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 163/411 (39%), Positives = 248/411 (60%), Gaps = 4/411 (0%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA-LNHAYW 62
           KDVVSW++M+  + +    + A   F +M    ++P++FT +S I  CA   A ++    
Sbjct: 420 KDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQ 479

Query: 63  VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
            H + I+ +      +S+AL+ MY++ G I+ A+ VF+     D+  WN+M+SG A HG 
Sbjct: 480 FHAISIKHRCHDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGY 539

Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
           +  A  +F +ME+  +  D +TFL ++  C+H GLVEEG++YFD M   Y I P ++HY 
Sbjct: 540 SQKALDVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYA 599

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
            MVDL  RAG ++E   LI  M       +WRALL ACR  K +ELG++A   ++++  L
Sbjct: 600 CMVDLYSRAGKLDETMSLIEGMPFPAGPTIWRALLGACRVHKNVELGKLAAEKLLSLEPL 659

Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
               YVLLSN+Y    +W   + VR++M  K VRK  G SW+++   +H F A D+SHP 
Sbjct: 660 DSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVRKEAGCSWIQIKNKVHFFIASDKSHPL 719

Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
           ++ I   L ++  + K EG+ P T  V  DV+E++KE  L  HSE+LALA+G++ T P  
Sbjct: 720 SEQIYAKLRAMTAKLKQEGYCPDTSFVPHDVAEDQKEAMLAMHSERLALAFGLIATPPAA 779

Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
            + I KNLR+  D H+ +KM+S +  R I++RD  RFH F+ G+CSCGD+W
Sbjct: 780 PLHIFKNLRVSGDGHTVMKMVSEIEDREIVMRDCCRFHHFKSGVCSCGDFW 830



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 113/228 (49%), Gaps = 17/228 (7%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  ++VV+W S++ G+++     + +  F  M +  V P+ FTF+SV+   A  G ++  
Sbjct: 117 MLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLG 176

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             VH   I+        +  +L++MY+KCG ++ A+ VF  ++  D+  WN +++G+ ++
Sbjct: 177 QHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLN 236

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVE--EGRKYFDHMRSRYS--IQP 176
           G           +E   +  DS + + +LT  ++  ++      K+    R  +S  ++ 
Sbjct: 237 G---------RDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKH 287

Query: 177 QLEHYG----AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
               YG    A++D   +AG +++A  +   M+   +VV W A++  C
Sbjct: 288 GFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGC 335



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 111/223 (49%), Gaps = 15/223 (6%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  +D+VSWN+++ G V N R  EAL+ F +  SS     + T+++VI  CA L  L  A
Sbjct: 218 METRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLA 277

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
             +H+ +++        +  AL+D Y+K G++  A +VF  +    +V  W AMI G   
Sbjct: 278 RQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQ 337

Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG----RKYFDHMRSRYSIQ 175
           +G    A+A+F++M    V P+ +T+  +LT       V E     + +   +++ Y   
Sbjct: 338 NGDIPLAAALFSRMREDGVAPNDLTYSTILT-------VSEASFPPQIHAQVIKTNYECT 390

Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
           P +    A++    +    EEA   I  M  + DVV W A+L+
Sbjct: 391 PTVG--TALMVSYSKLCSTEEALS-IFKMIDQKDVVSWSAMLT 430



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 100/217 (46%), Gaps = 7/217 (3%)

Query: 4   KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
           ++VVSW +MI G ++N     A   F  M    V P+  T+++++     +   +    +
Sbjct: 323 QNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTIL----TVSEASFPPQI 378

Query: 64  HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
           H  +I+   E    +  AL+  YSK    + A  +F  + + DV  W+AM++  A  G  
Sbjct: 379 HAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDC 438

Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTAC-SHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
             A+  F KM M  + P+  T    + AC S    V+ GR+ F  +  ++     L    
Sbjct: 439 NGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQ-FHAISIKHRCHDALCVSS 497

Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
           A+V +  R G IE A  +    T + D++ W ++LS 
Sbjct: 498 ALVSMYARKGSIENAQCVFERQT-DRDLLSWNSMLSG 533



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 3   DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
           D+D++SWNSM+ G+ ++    +AL  FR+M    ++ D  TF SVI GCA  G +     
Sbjct: 521 DRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQ 580

Query: 63  VHNLII-EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIH 120
             +L++ +  I       A ++D+YS+ GK+     + + +      ++W A++    +H
Sbjct: 581 YFDLMVRDYGITPTMDHYACMVDLYSRAGKLDETMSLIEGMPFPAGPTIWRALLGACRVH 640



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 93/199 (46%), Gaps = 8/199 (4%)

Query: 78  LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFN 137
           +  +L+DMY     +   ++VF+ + + +V  W ++++G    G+  D  ++F +M    
Sbjct: 93  VGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEG 152

Query: 138 VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQPQLEHYGAMVDLLGRAGHIEE 196
           V P+  TF  +L+  +  G+V+ G+    H +S ++     +    +++++  + G +EE
Sbjct: 153 VWPNPFTFSSVLSMVASQGMVDLGQHV--HAQSIKFGCCSTVFVCNSLMNMYAKCGLVEE 210

Query: 197 AYGLITSMTMEPDVVVWRALLSAC----RTFKRLELGEVAIVNISRLMGGDYVLLSNMYC 252
           A  +   M    D+V W  L++      R  + L+L   +  +I+ L    Y  + N+  
Sbjct: 211 ARVVFCRMETR-DMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCA 269

Query: 253 YLKRWDTAENVREIMKKKG 271
            LK    A  +   + K G
Sbjct: 270 NLKHLGLARQLHSSVLKHG 288


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 169/415 (40%), Positives = 241/415 (58%), Gaps = 5/415 (1%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           M  K+ VSW S++  +V+N   ++A   +       VE   F  +SV+  CA +  L   
Sbjct: 270 MGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELG 329

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H   ++  +E    + +AL+DMY KCG I+ +++ FD +   ++   N++I G A  
Sbjct: 330 RSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQ 389

Query: 121 GLAADASAIFTKMEMFNV--LPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
           G    A A+F +M        P+ +TF+ LL+ACS  G VE G K FD MRS Y I+P  
Sbjct: 390 GQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGA 449

Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
           EHY  +VD+LGRAG +E AY  I  M ++P + VW AL +ACR   + +LG +A  N+ +
Sbjct: 450 EHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFK 509

Query: 239 LM---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
           L     G++VLLSN +    RW  A  VRE +K  G++K  G SW+ +   +H F+A DR
Sbjct: 510 LDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDR 569

Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
           SH   + I   L  L    ++ G+ P  +L L D+ EEEK   + HHSEKLALA+G+L  
Sbjct: 570 SHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSL 629

Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
                IRI+KNLRIC DCHS+ K +S  ++R IIVRD  RFHRF+ G+CSC DYW
Sbjct: 630 PLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 95/218 (43%), Gaps = 2/218 (0%)

Query: 2   PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
           P ++VVSW S+I G  +N  F  AL  F EM    V P+ FTF       A L       
Sbjct: 69  PARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGK 128

Query: 62  WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
            +H L ++    L+  +  +  DMY K      A+++FD +   ++  WNA IS     G
Sbjct: 129 QIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDG 188

Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
              +A   F +    +  P+SITF   L ACS    +  G +    +  R      +   
Sbjct: 189 RPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQ-LHGLVLRSGFDTDVSVC 247

Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
             ++D  G+   I  +  + T M  + + V W +L++A
Sbjct: 248 NGLIDFYGKCKQIRSSEIIFTEMGTK-NAVSWCSLVAA 284



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 99/217 (45%), Gaps = 2/217 (0%)

Query: 1   MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
           +P++++ +WN+ I   V + R  EA+  F E       P+  TF + +  C+    LN  
Sbjct: 169 IPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLG 228

Query: 61  YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
             +H L++    + +  +   LID Y KC +I+ ++ +F  +   +   W ++++    +
Sbjct: 229 MQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQN 288

Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
                AS ++ +     V         +L+AC+    +E GR    H   +  ++  +  
Sbjct: 289 HEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHA-VKACVERTIFV 347

Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
             A+VD+ G+ G IE++      M  E ++V   +L+
Sbjct: 348 GSALVDMYGKCGCIEDSEQAFDEMP-EKNLVTRNSLI 383



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 83/215 (38%), Gaps = 47/215 (21%)

Query: 53  RLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA 112
           RLG + HA  V  L           L+  LI+MYSK    + A+ V       +V  W +
Sbjct: 23  RLGRVVHARIVKTLDSPPPP----FLANYLINMYSKLDHPESARLVLRLTPARNVVSWTS 78

Query: 113 MISGVAIHGLAADASAIFTKMEMFNVLPDSITF--------------------------- 145
           +ISG+A +G  + A   F +M    V+P+  TF                           
Sbjct: 79  LISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCG 138

Query: 146 --LGLLTACS----HCG--LVEEGRKYFDHMRSRYSIQPQLEHYGAMVD---LLGRAGHI 194
             L +   CS    +C   L ++ RK FD +  R      LE + A +      GR    
Sbjct: 139 RILDVFVGCSAFDMYCKTRLRDDARKLFDEIPER-----NLETWNAFISNSVTDGRPREA 193

Query: 195 EEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG 229
            EA+     +   P+ + + A L+AC  +  L LG
Sbjct: 194 IEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLG 228


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.324    0.138    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,251,390,683
Number of Sequences: 23463169
Number of extensions: 242518658
Number of successful extensions: 902090
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9704
Number of HSP's successfully gapped in prelim test: 1847
Number of HSP's that attempted gapping in prelim test: 782102
Number of HSP's gapped (non-prelim): 53557
length of query: 410
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 265
effective length of database: 8,957,035,862
effective search space: 2373614503430
effective search space used: 2373614503430
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 78 (34.7 bits)