BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040371
(410 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FI49|PP428_ARATH Pentatricopeptide repeat-containing protein At5g50990
OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2
Length = 534
Score = 577 bits (1487), Expect = e-164, Method: Compositional matrix adjust.
Identities = 266/409 (65%), Positives = 342/409 (83%), Gaps = 1/409 (0%)
Query: 3 DKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAY 61
D++V++WN MIGG+VRN +++EAL+ + MLS + ++P+KF+FAS + CARLG L+HA
Sbjct: 126 DQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKPNKFSFASSLAACARLGDLHHAK 185
Query: 62 WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
WVH+L+I+ IELN ILS+AL+D+Y+KCG I ++EVF +V+RNDVS+WNAMI+G A HG
Sbjct: 186 WVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWNAMITGFATHG 245
Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
LA +A +F++ME +V PDSITFLGLLT CSHCGL+EEG++YF M R+SIQP+LEHY
Sbjct: 246 LATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRRFSIQPKLEHY 305
Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
GAMVDLLGRAG ++EAY LI SM +EPDVV+WR+LLS+ RT+K ELGE+AI N+S+
Sbjct: 306 GAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLLSSSRTYKNPELGEIAIQNLSKAKS 365
Query: 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
GDYVLLSN+Y K+W++A+ VRE+M K+G+RK++GKSWLE G+IH+FKAGD SH E +
Sbjct: 366 GDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKAKGKSWLEFGGMIHRFKAGDTSHIETK 425
Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
AI K+L LIQ+TKS+GF+ T+LVLMDVSEEEKE NL +HSEKLALAY ILK+SPGTEI
Sbjct: 426 AIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEEEKEENLNYHSEKLALAYVILKSSPGTEI 485
Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
RI KN+R+C DCH+WIK +S+LL RVII+RDRIRFHRFE GLCSC DYW
Sbjct: 486 RIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRFEDGLCSCRDYW 534
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 13/169 (7%)
Query: 82 LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMF-NVLP 140
+I+ K G+ +AK+V +V WN MI G + +A M F ++ P
Sbjct: 104 IIESLMKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKP 163
Query: 141 DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL 200
+ +F L AC+ G + K+ + I+ A+VD+ + G I + +
Sbjct: 164 NKFSFASSLAACARLGDLHHA-KWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREV 222
Query: 201 ITSMTMEPDVVVWRALLS----------ACRTFKRLELGEVAIVNISRL 239
S+ DV +W A+++ A R F +E V+ +I+ L
Sbjct: 223 FYSVK-RNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFL 270
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 394 bits (1011), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/414 (44%), Positives = 270/414 (65%), Gaps = 4/414 (0%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M +K+ +SW +MI G+V+ EAL+ F EM +S VEPD + A+ + CA+LGAL
Sbjct: 207 MAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQG 266
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
W+H+ + + +I ++ +L LIDMY+KCG+++ A EVF +++ V W A+ISG A H
Sbjct: 267 KWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYH 326
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
G +A + F +M+ + P+ ITF +LTACS+ GLVEEG+ F M Y+++P +EH
Sbjct: 327 GHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEH 386
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE---VAIVNIS 237
YG +VDLLGRAG ++EA I M ++P+ V+W ALL ACR K +ELGE ++ I
Sbjct: 387 YGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAID 446
Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
GG YV +N++ K+WD A R +MK++GV K G S + L G H+F AGDRSH
Sbjct: 447 PYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSH 506
Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMD-VSEEEKEGNLYHHSEKLALAYGILKTS 356
PE + I + ++ + G++P E +L+D V ++E+E ++ HSEKLA+ YG++KT
Sbjct: 507 PEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTK 566
Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
PGT IRI KNLR+C DCH K+IS++ +R I++RDR RFH F G CSCGDYW
Sbjct: 567 PGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 110/247 (44%), Gaps = 35/247 (14%)
Query: 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGAL------- 57
D WN MI GF + + +L ++ ML S + +TF S++ C+ L A
Sbjct: 79 DTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIH 138
Query: 58 ---------NHAYWVHNLIIEKKIELNFILSAALIDM---------------YSKCGKIQ 93
N Y V++LI + NF L+ L D Y K GK+
Sbjct: 139 AQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMD 198
Query: 94 MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
+A +F + + W MISG + +A +F +M+ +V PD+++ L+AC+
Sbjct: 199 IALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACA 258
Query: 154 HCGLVEEGRKYFDHM-RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
G +E+G+ ++ ++R + L ++D+ + G +EEA + ++ + V
Sbjct: 259 QLGALEQGKWIHSYLNKTRIRMDSVLG--CVLIDMYAKCGEMEEALEVFKNIK-KKSVQA 315
Query: 213 WRALLSA 219
W AL+S
Sbjct: 316 WTALISG 322
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 8/144 (5%)
Query: 74 LNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM 133
L+F +S+ D + A+ VFD R D +WN MI G + + ++ +M
Sbjct: 53 LSFCISSTSSDF------LPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRM 106
Query: 134 EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGH 193
+ ++ TF LL ACS+ EE + + ++ + + ++++ G+
Sbjct: 107 LCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQI-TKLGYENDVYAVNSLINSYAVTGN 165
Query: 194 IEEAYGLITSMTMEPDVVVWRALL 217
+ A+ L + EPD V W +++
Sbjct: 166 FKLAHLLFDRIP-EPDDVSWNSVI 188
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/415 (45%), Positives = 273/415 (65%), Gaps = 6/415 (1%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
MP+KD+V+WNS+I GF N + +EAL + EM S ++PD FT S++ CA++GAL
Sbjct: 182 MPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLG 241
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD-TVQRNDVSVWNAMISGVAI 119
VH +I+ + N S L+D+Y++CG+++ AK +FD V +N VS W ++I G+A+
Sbjct: 242 KRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVS-WTSLIVGLAV 300
Query: 120 HGLAADASAIFTKMEMFN-VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
+G +A +F ME +LP ITF+G+L ACSHCG+V+EG +YF MR Y I+P++
Sbjct: 301 NGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRI 360
Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
EH+G MVDLL RAG +++AY I SM M+P+VV+WR LL AC +L E A + I +
Sbjct: 361 EHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQ 420
Query: 239 L---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
L GDYVLLSNMY +RW + +R+ M + GV+K G S +E+ +H+F GD+
Sbjct: 421 LEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDK 480
Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
SHP++ AI L + R +SEG++P V +DV EEEKE + +HSEK+A+A+ ++ T
Sbjct: 481 SHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLIST 540
Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
+ I + KNLR+C DCH IK++S++ R I+VRDR RFH F+ G CSC DYW
Sbjct: 541 PERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 109/214 (50%), Gaps = 3/214 (1%)
Query: 5 DVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
+V WN++I G+ A +REM +S VEPD T+ +I + + +
Sbjct: 84 NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143
Query: 64 HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
H+++I + +L+ +Y+ CG + A +VFD + D+ WN++I+G A +G
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKP 203
Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
+A A++T+M + PD T + LL+AC+ G + G++ +M + + L
Sbjct: 204 EEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM-IKVGLTRNLHSSNV 262
Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
++DL R G +EEA L M ++ + V W +L+
Sbjct: 263 LLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLI 295
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/410 (45%), Positives = 261/410 (63%), Gaps = 3/410 (0%)
Query: 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
+D +SWNS++ G+V+N R++EALR FR+M+++KV+P F+SVI CA L L+ +
Sbjct: 306 RDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQL 365
Query: 64 HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
H ++ N +++AL+DMYSKCG I+ A+++FD + D W A+I G A+HG
Sbjct: 366 HGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHG 425
Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
+A ++F +M+ V P+ + F+ +LTACSH GLV+E YF+ M Y + +LEHY A
Sbjct: 426 HEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAA 485
Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
+ DLLGRAG +EEAY I+ M +EP VW LLS+C K LEL E I +
Sbjct: 486 VADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSEN 545
Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
G YVL+ NMY RW +R M+KKG+RK SW+E+ H F +GDRSHP
Sbjct: 546 MGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSM 605
Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
I++ L +++++ + EG++ T VL DV EE K L+ HSE+LA+A+GI+ T PGT
Sbjct: 606 DKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTT 665
Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
IR++KN+RIC DCH IK IS++ R IIVRD RFH F G CSCGDYW
Sbjct: 666 IRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 107/250 (42%), Gaps = 38/250 (15%)
Query: 6 VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
V++W S+I F + F +AL F EM +S PD F SV+ C + L VH
Sbjct: 70 VLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHG 129
Query: 66 LIIEKKIELNFILSAALIDMYSKC----GKIQMA-------------------------- 95
I+ ++ + AL++MY+K KI +
Sbjct: 130 FIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMP 189
Query: 96 ------KEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
+ VF+ + R DV +N +I+G A G+ DA + +M ++ PDS T +L
Sbjct: 190 FGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVL 249
Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
S V +G++ ++ R I + ++VD+ ++ IE++ + + + D
Sbjct: 250 PIFSEYVDVIKGKEIHGYV-IRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCR-D 307
Query: 210 VVVWRALLSA 219
+ W +L++
Sbjct: 308 GISWNSLVAG 317
Score = 32.7 bits (73), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 46 SVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN 105
++I R+ + + A +H I + L+ ++ +I +Y+ + A +F T++
Sbjct: 10 TLIKNPTRIKSKSQAKQLHAQFIRTQ-SLSHTSASIVISIYTNLKLLHEALLLFKTLKSP 68
Query: 106 DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
V W ++I L + A A F +M PD F +L +C+
Sbjct: 69 PVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCT 116
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/414 (46%), Positives = 267/414 (64%), Gaps = 5/414 (1%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M + VVSWN+MI G+ N F +A+ FREM + P+ T SV+ +RLG+L
Sbjct: 234 MRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG 293
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
W+H + I ++ +L +ALIDMYSKCG I+ A VF+ + R +V W+AMI+G AIH
Sbjct: 294 EWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIH 353
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
G A DA F KM V P + ++ LLTACSH GLVEEGR+YF M S ++P++EH
Sbjct: 354 GQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEH 413
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
YG MVDLLGR+G ++EA I +M ++PD V+W+ALL ACR +E+G+ + NI M
Sbjct: 414 YGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGK-RVANILMDM 472
Query: 241 ----GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
G YV LSNMY W +R MK+K +RK G S +++ GV+H+F D S
Sbjct: 473 VPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDS 532
Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
HP+A+ I+ +L + + + G+ P T VL+++ EE+KE L++HSEK+A A+G++ TS
Sbjct: 533 HPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTS 592
Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
PG IRI KNLRIC DCHS IK+IS++ +R I VRDR RFH F+ G CSC DYW
Sbjct: 593 PGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 127/269 (47%), Gaps = 54/269 (20%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEAL---RFFREMLSSK-VEPDKFTFASVIYGCARLGA 56
MP ++ SWN++I GF + D+AL F EM+S + VEP++FTF SV+ CA+ G
Sbjct: 85 MPQRNCFSWNTIIRGFSESDE-DKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGK 143
Query: 57 LNHAYWVHNL------------------------------------IIEK---------K 71
+ +H L IIEK K
Sbjct: 144 IQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRK 203
Query: 72 IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFT 131
+ +L +ID Y + G + A+ +FD +++ V WN MISG +++G DA +F
Sbjct: 204 RDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFR 263
Query: 132 KMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS-IQPQLEHYGAMVDLLGR 190
+M+ ++ P+ +T + +L A S G +E G + H+ + S I+ A++D+ +
Sbjct: 264 EMKKGDIRPNYVTLVSVLPAISRLGSLELGE--WLHLYAEDSGIRIDDVLGSALIDMYSK 321
Query: 191 AGHIEEAYGLITSMTMEPDVVVWRALLSA 219
G IE+A + + E +V+ W A+++
Sbjct: 322 CGIIEKAIHVFERLPRE-NVITWSAMING 349
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/420 (44%), Positives = 274/420 (65%), Gaps = 10/420 (2%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-----VEPDKFTFASVIYGCARLG 55
MP+++V+SW+ +I G+V ++ EAL FREM K V P++FT ++V+ C RLG
Sbjct: 154 MPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLG 213
Query: 56 ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMI 114
AL WVH I + +E++ +L ALIDMY+KCG ++ AK VF+ + + DV ++AMI
Sbjct: 214 ALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMI 273
Query: 115 SGVAIHGLAADASAIFTKMEMF-NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
+A++GL + +F++M N+ P+S+TF+G+L AC H GL+ EG+ YF M +
Sbjct: 274 CCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFG 333
Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI 233
I P ++HYG MVDL GR+G I+EA I SM MEPDV++W +LLS R ++ E A+
Sbjct: 334 ITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGAL 393
Query: 234 ---VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQF 290
+ + + G YVLLSN+Y RW + +R M+ KG+ K G S++E+ GV+H+F
Sbjct: 394 KRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEF 453
Query: 291 KAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAY 350
GD S E++ I +L ++QR + G++ T+ VL+D++E++KE L +HSEKLA+A+
Sbjct: 454 VVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAF 513
Query: 351 GILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
++KT PGT +RI KNLRIC DCH +KMIS+L R I+VRD RFH F G CSC D+W
Sbjct: 514 CLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 103/248 (41%), Gaps = 40/248 (16%)
Query: 9 WNSMIGGFVRNARFDE---ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
WN +I V N + + + M + +V PD TF ++ L H
Sbjct: 27 WNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHA 86
Query: 66 LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
I+ ++ + + +L++MYS CG ++ A+ VFD D+ WN++++ A GL D
Sbjct: 87 QILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDD 146
Query: 126 ASAIFTKMEMFNVL------------------------------------PDSITFLGLL 149
A +F +M NV+ P+ T +L
Sbjct: 147 ARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVL 206
Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
+AC G +E+G K+ +Y ++ + A++D+ + G +E A + ++ + D
Sbjct: 207 SACGRLGALEQG-KWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKD 265
Query: 210 VVVWRALL 217
V + A++
Sbjct: 266 VKAYSAMI 273
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 178/415 (42%), Positives = 270/415 (65%), Gaps = 5/415 (1%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
M ++D+VSWN MI G+ ++ ++AL F+++L+ K +PD+ T + + C+++GAL
Sbjct: 218 MCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALET 277
Query: 60 AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
W+H + +I LN + LIDMYSKCG ++ A VF+ R D+ WNAMI+G A+
Sbjct: 278 GRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAM 337
Query: 120 HGLAADASAIFTKMEMFNVL-PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
HG + DA +F +M+ L P ITF+G L AC+H GLV EG + F+ M Y I+P++
Sbjct: 338 HGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKI 397
Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELG-EVA--IVN 235
EHYG +V LLGRAG ++ AY I +M M+ D V+W ++L +C+ LG E+A ++
Sbjct: 398 EHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIG 457
Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
++ G YVLLSN+Y + ++ VR +MK+KG+ K G S +E+ +H+F+AGDR
Sbjct: 458 LNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDR 517
Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
H +++ I +L + +R KS G++P T VL D+ E EKE +L HSE+LA+AYG++ T
Sbjct: 518 EHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLIST 577
Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
PG+ ++I KNLR+C DCH+ K+IS++ R I++RDR RFH F G CSCGD+W
Sbjct: 578 KPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
Score = 101 bits (252), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 119/245 (48%), Gaps = 30/245 (12%)
Query: 3 DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA-RLGALNHAY 61
D D+ + + I N D+A + ++LSS++ P++FTF+S++ C+ + G L H +
Sbjct: 92 DPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKSGKLIHTH 151
Query: 62 WVH--------------------------NLIIEKKIELNFILSAALIDMYSKCGKIQMA 95
+ + ++ E + + S A+I Y+K G ++ A
Sbjct: 152 VLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAA 211
Query: 96 KEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTK-MEMFNVLPDSITFLGLLTACSH 154
+ +FD++ D+ WN MI G A HG DA +F K + PD IT + L+ACS
Sbjct: 212 RALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQ 271
Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
G +E GR ++S I+ ++ ++D+ + G +EEA L+ + T D+V W
Sbjct: 272 IGALETGRWIHVFVKSS-RIRLNVKVCTGLIDMYSKCGSLEEAV-LVFNDTPRKDIVAWN 329
Query: 215 ALLSA 219
A+++
Sbjct: 330 AMIAG 334
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 40/185 (21%)
Query: 64 HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
HNL++ + +L+ L Y+ GKI+ + +F D+ ++ A I+ +I+GL
Sbjct: 55 HNLLLHPRYP---VLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLK 111
Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSH----------------------CGLVE-- 159
A ++ ++ + P+ TF LL +CS GLV+
Sbjct: 112 DQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKSGKLIHTHVLKFGLGIDPYVATGLVDVY 171
Query: 160 -------EGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
+K FD M R L AM+ + G++E A L SM E D+V
Sbjct: 172 AKGGDVVSAQKVFDRMPER-----SLVSSTAMITCYAKQGNVEAARALFDSMC-ERDIVS 225
Query: 213 WRALL 217
W ++
Sbjct: 226 WNVMI 230
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/428 (44%), Positives = 273/428 (63%), Gaps = 19/428 (4%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
MP++ +VSWNSMI VR +D AL+ FREM S EPD +T SV+ CA LG+L+
Sbjct: 212 MPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLG 270
Query: 61 YWVHNLIIEK---KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
W H ++ K + ++ ++ +LI+MY KCG ++MA++VF +Q+ D++ WNAMI G
Sbjct: 271 TWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGF 330
Query: 118 AIHGLAADASAIFTKM--EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
A HG A +A F +M + NV P+S+TF+GLL AC+H G V +GR+YFD M Y I+
Sbjct: 331 ATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIE 390
Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA-CRTFKRLELGEVAIV 234
P LEHYG +VDL+ RAG+I EA ++ SM M+PD V+WR+LL A C+ +EL E
Sbjct: 391 PALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIAR 450
Query: 235 NI----------SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELA 284
NI + G YVLLS +Y RW+ VR++M + G+RK G S +E+
Sbjct: 451 NIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEIN 510
Query: 285 GVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPA-TELVLMDVSEE-EKEGNLYHH 342
G+ H+F AGD SHP+ + I + L + R +S G+LP ++ L+D + + KE +L H
Sbjct: 511 GISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLH 570
Query: 343 SEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGG 402
SE+LA+A+G++ P T IRI KNLR+C+DCH K+IS++ IIVRDR+RFH F+ G
Sbjct: 571 SERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDG 630
Query: 403 LCSCGDYW 410
CSC DYW
Sbjct: 631 SCSCLDYW 638
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 103/223 (46%), Gaps = 6/223 (2%)
Query: 9 WNSMIGGFVRN-ARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
WN++I + +R +EA +R+ML + PDK TF V+ CA + + VH
Sbjct: 117 WNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQ 176
Query: 67 IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
I++ + ++ LI +Y CG + +A++VFD + + WN+MI + G A
Sbjct: 177 IVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSA 236
Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY--GAM 184
+F +M+ + PD T +L+AC+ G + G + + + ++ ++
Sbjct: 237 LQLFREMQR-SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSL 295
Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
+++ + G + A + M D+ W A++ T R E
Sbjct: 296 IEMYCKCGSLRMAEQVFQGMQKR-DLASWNAMILGFATHGRAE 337
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 111/276 (40%), Gaps = 56/276 (20%)
Query: 42 FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT 101
F+ A ++L L HA+ + E+ L L ++ + S + A VFD+
Sbjct: 52 FSLAETCSDMSQLKQL-HAFTLRTTYPEEPATL--FLYGKILQLSSSFSDVNYAFRVFDS 108
Query: 102 VQRNDVSVWNAMISGVAIHGLA--ADASAIFTKM-EMFNVLPDSITFLGLLTACS----- 153
++ + +WN +I A H ++ +A ++ KM E PD TF +L AC+
Sbjct: 109 IENHSSFMWNTLIRACA-HDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGF 167
Query: 154 ------HCGLVEEG------------------------RKYFDHMRSRYSIQPQLEHYGA 183
HC +V+ G RK FD M R L + +
Sbjct: 168 SEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPER-----SLVSWNS 222
Query: 184 MVDLLGRAGHIEEAYGLITSM--TMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
M+D L R G + A L M + EPD +++LSAC L LG A + R
Sbjct: 223 MIDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCD 282
Query: 242 GDY---VLLSN----MYCYLKRWDTAENVREIMKKK 270
D VL+ N MYC AE V + M+K+
Sbjct: 283 VDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKR 318
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 373 bits (958), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/418 (45%), Positives = 259/418 (61%), Gaps = 8/418 (1%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M K +VSWN MIG +++NA EA+ + M + EPD + SV+ C AL+
Sbjct: 269 MGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLG 328
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
+H I KK+ N +L ALIDMY+KCG ++ A++VF+ ++ DV W AMIS
Sbjct: 329 KKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFS 388
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
G DA A+F+K++ ++PDSI F+ L ACSH GL+EEGR F M Y I P+LEH
Sbjct: 389 GRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEH 448
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
MVDLLGRAG ++EAY I M+MEP+ VW ALL ACR ++G +A + +L
Sbjct: 449 LACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLA 508
Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
G YVLLSN+Y RW+ N+R IMK KG++K+ G S +E+ +IH F GDRSH
Sbjct: 509 PEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSH 568
Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
P++ I + L L+++ K G++P +E L DV EE+KE +L HSEKLA+ + ++ T
Sbjct: 569 PQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKE 628
Query: 358 GTE-----IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
E IRI+KNLRIC DCH K+IS++ R II+RD RFH F G+CSCGDYW
Sbjct: 629 EEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 121/279 (43%), Gaps = 10/279 (3%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
+P+++V+ N MI +V N + E ++ F M V PD +TF V+ C+ G +
Sbjct: 100 IPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIG 159
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
+H + + + L+ MY KCG + A+ V D + R DV WN+++ G A +
Sbjct: 160 RKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQN 219
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
DA + +ME + D+ T LL A S+ E Y M + + L
Sbjct: 220 QRFDDALEVCREMESVKISHDAGTMASLLPAVSN--TTTENVMYVKDMFFKMG-KKSLVS 276
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
+ M+ + + EA L + M EPD V ++L AC L LG+ I
Sbjct: 277 WNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIE 336
Query: 238 RLMGGDYVLLSN----MYCYLKRWDTAENVREIMKKKGV 272
R +LL N MY + A +V E MK + V
Sbjct: 337 RKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDV 375
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 2/155 (1%)
Query: 63 VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
VH+ II + + N L L+ Y+ + A++VFD + +V + N MI +G
Sbjct: 61 VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGF 120
Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
+ +F M NV PD TF +L ACS G + GRK ++ + L
Sbjct: 121 YGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSA-TKVGLSSTLFVGN 179
Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
+V + G+ G + EA ++ M+ DVV W +L+
Sbjct: 180 GLVSMYGKCGFLSEARLVLDEMSRR-DVVSWNSLV 213
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/413 (44%), Positives = 257/413 (62%), Gaps = 3/413 (0%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M +KD+V+W++MI G+ N+ E + F +ML ++PD+F+ + CA LGAL+
Sbjct: 273 MVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLG 332
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
W +LI + N ++ ALIDMY+KCG + EVF ++ D+ + NA ISG+A +
Sbjct: 333 EWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKN 392
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
G + A+F + E + PD TFLGLL C H GL+++G ++F+ + Y+++ +EH
Sbjct: 393 GHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEH 452
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
YG MVDL GRAG +++AY LI M M P+ +VW ALLS CR K +L E + + L
Sbjct: 453 YGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALE 512
Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
G+YV LSN+Y RWD A VR++M KKG++K G SW+EL G +H+F A D+SH
Sbjct: 513 PWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSH 572
Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
P + I L L + GF+P TE V DV EEEKE L +HSEKLA+A G++ T
Sbjct: 573 PLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDH 632
Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
G IR+ KNLR+C DCH +K+IS++ RR I+VRD RFH F G CSC DYW
Sbjct: 633 GQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685
Score = 125 bits (313), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 117/219 (53%), Gaps = 2/219 (0%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
+PD+ VV+W ++ G+ + R EA+ F++M+ V+PD + V+ C +G L+
Sbjct: 172 IPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSG 231
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
W+ + E +++ N + L+++Y+KCGK++ A+ VFD++ D+ W+ MI G A +
Sbjct: 232 EWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASN 291
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
+ +F +M N+ PD + +G L++C+ G ++ G ++ + R+ L
Sbjct: 292 SFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLG-EWGISLIDRHEFLTNLFM 350
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
A++D+ + G + + + M E D+V+ A +S
Sbjct: 351 ANALIDMYAKCGAMARGFEVFKEMK-EKDIVIMNAAISG 388
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 8/218 (3%)
Query: 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
++ +NS+I GFV N F E L F + + FTF V+ C R + +H
Sbjct: 75 NIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLH 134
Query: 65 NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
+L+++ + +L+ +YS G++ A ++FD + V W A+ SG G
Sbjct: 135 SLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHR 194
Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---KYFDHMRSRYSIQPQLEHY 181
+A +F KM V PDS + +L+AC H G ++ G KY + M +Q
Sbjct: 195 EAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEME----MQKNSFVR 250
Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
+V+L + G +E+A + SM +E D+V W ++
Sbjct: 251 TTLVNLYAKCGKMEKARSVFDSM-VEKDIVTWSTMIQG 287
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/412 (43%), Positives = 256/412 (62%), Gaps = 3/412 (0%)
Query: 2 PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
P+K + SWN+MI G+ +N ++A+ FREM S+ P+ T ++ CA+LGAL+
Sbjct: 381 PEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGK 440
Query: 62 WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
WVH+L+ E + +S ALI MY+KCG I A+ +FD + + + WN MISG +HG
Sbjct: 441 WVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHG 500
Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
+A IF +M + P +TFL +L ACSH GLV+EG + F+ M RY +P ++HY
Sbjct: 501 QGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHY 560
Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
MVD+LGRAGH++ A I +M++EP VW LL ACR K L + L
Sbjct: 561 ACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDP 620
Query: 242 ---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
G +VLLSN++ + + A VR+ KK+ + K+ G + +E+ H F +GD+SHP
Sbjct: 621 DNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHP 680
Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
+ + I + L L + + G+ P TEL L DV EEE+E + HSE+LA+A+G++ T PG
Sbjct: 681 QVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPG 740
Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
TEIRI KNLR+C DCH+ K+IS++ RVI+VRD RFH F+ G+CSCGDYW
Sbjct: 741 TEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 108/215 (50%), Gaps = 5/215 (2%)
Query: 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
D+V++N+MI G+ N + +L F+E++ S T S++ G L Y +H
Sbjct: 286 DIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLV---PVSGHLMLIYAIH 342
Query: 65 NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
++ + +S AL +YSK +I+ A+++FD + WNAMISG +GL
Sbjct: 343 GYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTE 402
Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
DA ++F +M+ P+ +T +L+AC+ G + G+ D +RS + + A+
Sbjct: 403 DAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRST-DFESSIYVSTAL 461
Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
+ + + G I EA L MT + + V W ++S
Sbjct: 462 IGMYAKCGSIAEARRLFDLMTKKNE-VTWNTMISG 495
Score = 92.0 bits (227), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 129/311 (41%), Gaps = 45/311 (14%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
MP+KD + WN+MI G+ +N + E+++ FR++++ S D T ++ A L L
Sbjct: 180 MPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRL 239
Query: 60 AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
+H+L + + + I +YSKCGKI+M +F ++ D+ +NAMI G
Sbjct: 240 GMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTS 299
Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL---------------------- 157
+G + ++F ++ + S T + L+ H L
Sbjct: 300 NGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTA 359
Query: 158 ----------VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT-- 205
+E RK FD S + L + AM+ + G E+A L M
Sbjct: 360 LTTVYSKLNEIESARKLFDE-----SPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKS 414
Query: 206 -MEPDVVVWRALLSACRTFKRLELGEVA--IVNISRLMGGDYVLLSNMYCYLKRWDTAEN 262
P+ V +LSAC L LG+ +V + YV + + Y K AE
Sbjct: 415 EFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEA 474
Query: 263 VR--EIMKKKG 271
R ++M KK
Sbjct: 475 RRLFDLMTKKN 485
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 4/152 (2%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M K+ V+WN+MI G+ + + EAL F EML+S + P TF V+Y C+ G +
Sbjct: 481 MTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEG 540
Query: 61 YWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
+ N +I + E + A ++D+ + G +Q A + + + SVW ++
Sbjct: 541 DEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACR 600
Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150
IH A + K +F + PD++ + LL+
Sbjct: 601 IHKDTNLARTVSEK--LFELDPDNVGYHVLLS 630
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 96/227 (42%), Gaps = 6/227 (2%)
Query: 5 DVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNHAYWV 63
DV +N ++ GF N +L F + S+ ++P+ T+A I + +
Sbjct: 82 DVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVI 141
Query: 64 HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
H + + +L + ++ MY K +++ A++VFD + D +WN MISG + +
Sbjct: 142 HGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMY 201
Query: 124 ADASAIFTKM--EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
++ +F + E L D+ T L +L A + + G + + ++
Sbjct: 202 VESIQVFRDLINESCTRL-DTTTLLDILPAVAELQELRLGMQ-IHSLATKTGCYSHDYVL 259
Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLEL 228
+ L + G I+ L +PD+V + A++ + EL
Sbjct: 260 TGFISLYSKCGKIKMGSALFREF-RKPDIVAYNAMIHGYTSNGETEL 305
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 77/175 (44%), Gaps = 13/175 (7%)
Query: 53 RLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA 112
R +++H H II + L L S G I A+++F +VQR DV ++N
Sbjct: 29 RSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNV 88
Query: 113 MISGVAIHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACS-----HCGLVEEGRKYFD 166
++ G +++ + ++F + + ++ P+S T+ ++A S G V G+ D
Sbjct: 89 LMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVD 148
Query: 167 HMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACR 221
S + + V + + +E+A + M E D ++W ++S R
Sbjct: 149 GCDSELLLGSNI------VKMYFKFWRVEDARKVFDRMP-EKDTILWNTMISGYR 196
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/415 (42%), Positives = 265/415 (63%), Gaps = 5/415 (1%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREM-LSSKVEPDKFTFASVIYGCARLGALNH 59
MP KD+V+WN++I + +N + +EAL F E+ L ++ ++ T S + CA++GAL
Sbjct: 324 MPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALEL 383
Query: 60 AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
W+H+ I + I +NF +++ALI MYSKCG ++ ++EVF++V++ DV VW+AMI G+A+
Sbjct: 384 GRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAM 443
Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
HG +A +F KM+ NV P+ +TF + ACSH GLV+E F M S Y I P+ +
Sbjct: 444 HGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEK 503
Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
HY +VD+LGR+G++E+A I +M + P VW ALL AC+ L L E+A + L
Sbjct: 504 HYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLEL 563
Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
G +VLLSN+Y L +W+ +R+ M+ G++K G S +E+ G+IH+F +GD +
Sbjct: 564 EPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNA 623
Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEE-KEGNLYHHSEKLALAYGILKT 355
HP ++ + L ++++ KS G+ P VL + EEE KE +L HSEKLA+ YG++ T
Sbjct: 624 HPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLIST 683
Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
IR+ KNLR+C DCHS K+IS+L R IIVRDR RFH F G CSC D+W
Sbjct: 684 EAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 125/247 (50%), Gaps = 34/247 (13%)
Query: 3 DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
+KDVVSWNSMI GFV+ D+AL F++M S V+ T V+ CA++ L
Sbjct: 194 EKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQ 253
Query: 63 VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ------------------- 103
V + I E ++ +N L+ A++DMY+KCG I+ AK +FD ++
Sbjct: 254 VCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISED 313
Query: 104 ------------RNDVSVWNAMISGVAIHGLAADASAIFTKMEMF-NVLPDSITFLGLLT 150
+ D+ WNA+IS +G +A +F ++++ N+ + IT + L+
Sbjct: 314 YEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLS 373
Query: 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
AC+ G +E GR +++ ++ I+ A++ + + G +E++ + S+ DV
Sbjct: 374 ACAQVGALELGRWIHSYIK-KHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKR-DV 431
Query: 211 VVWRALL 217
VW A++
Sbjct: 432 FVWSAMI 438
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 3/218 (1%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
+P + +WN++I + ++ F +M+S S+ P+K+TF +I A + +L+
Sbjct: 90 IPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSL 149
Query: 60 AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
+H + ++ + + ++ +LI Y CG + A +VF T++ DV WN+MI+G
Sbjct: 150 GQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQ 209
Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
G A +F KME +V +T +G+L+AC+ +E GR+ ++ + L
Sbjct: 210 KGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEEN-RVNVNLT 268
Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
AM+D+ + G IE+A L +M E D V W +L
Sbjct: 269 LANAMLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTML 305
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/413 (42%), Positives = 263/413 (63%), Gaps = 4/413 (0%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M +++ WN+MI G+ +N EA+ F EM++ V PD + S I CA++G+L A
Sbjct: 283 MKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQA 342
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
++ + + +S+ALIDM++KCG ++ A+ VFD DV VW+AMI G +H
Sbjct: 343 RSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLH 402
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
G A +A +++ ME V P+ +TFLGLL AC+H G+V EG +F+ M + + I PQ +H
Sbjct: 403 GRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRM-ADHKINPQQQH 461
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
Y ++DLLGRAGH+++AY +I M ++P V VW ALLSAC+ + +ELGE A + +I
Sbjct: 462 YACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSID 521
Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
G YV LSN+Y + WD VR MK+KG+ K G SW+E+ G + F+ GD+SH
Sbjct: 522 PSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSH 581
Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
P + I++ + + R K GF+ + L D+++EE E L HSE++A+AYG++ T
Sbjct: 582 PRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQ 641
Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
GT +RI+KNLR C +CH+ K+IS+L+ R I+VRD RFH F+ G+CSCGDYW
Sbjct: 642 GTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694
Score = 125 bits (313), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 122/217 (56%), Gaps = 2/217 (0%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
+P++ +VSW +++ + +N EAL F +M V+PD SV+ L L
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQG 241
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
+H +++ +E+ L +L MY+KCG++ AK +FD ++ ++ +WNAMISG A +
Sbjct: 242 RSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKN 301
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
G A +A +F +M +V PD+I+ ++AC+ G +E+ R ++++ R + +
Sbjct: 302 GYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYV-GRSDYRDDVFI 360
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
A++D+ + G +E A L+ T++ DVVVW A++
Sbjct: 361 SSALIDMFAKCGSVEGAR-LVFDRTLDRDVVVWSAMI 396
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 124/290 (42%), Gaps = 47/290 (16%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
+P + WN++I G+ RN F +AL + M ++V PD FTF ++ C+ L L
Sbjct: 79 LPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMG 138
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV---QRNDVSVWNAMISGV 117
+VH + + + + LI +Y+KC ++ A+ VF+ + +R VS W A++S
Sbjct: 139 RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVS-WTAIVSAY 197
Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA--C----------------------- 152
A +G +A IF++M +V PD + + +L A C
Sbjct: 198 AQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEP 257
Query: 153 ----------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
+ CG V + FD M+S P L + AM+ + G+ EA +
Sbjct: 258 DLLISLNTMYAKCGQVATAKILFDKMKS-----PNLILWNAMISGYAKNGYAREAIDMFH 312
Query: 203 SMT---MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSN 249
M + PD + + +SAC LE + R D V +S+
Sbjct: 313 EMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISS 362
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 8/188 (4%)
Query: 34 SSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQ 93
+S + D F +AS+I L +H ++ ++ + L LI S G I
Sbjct: 15 NSGIHSDSF-YASLIDSATHKAQLKQ---IHARLLVLGLQFSGFLITKLIHASSSFGDIT 70
Query: 94 MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
A++VFD + R + WNA+I G + + DA +++ M++ V PDS TF LL ACS
Sbjct: 71 FARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACS 130
Query: 154 HCGLVEEGRKYFDHMRS-RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM-EPDVV 211
++ GR F H + R + ++ L + + A + + + E +V
Sbjct: 131 GLSHLQMGR--FVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIV 188
Query: 212 VWRALLSA 219
W A++SA
Sbjct: 189 SWTAIVSA 196
Score = 39.7 bits (91), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 12/125 (9%)
Query: 148 LLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM- 206
L+ A S G + R+ FD + +PQ+ + A++ R H ++A + ++M +
Sbjct: 59 LIHASSSFGDITFARQVFDDLP-----RPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLA 113
Query: 207 --EPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSN----MYCYLKRWDTA 260
PD + LL AC L++G + RL V + N +Y +R +A
Sbjct: 114 RVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSA 173
Query: 261 ENVRE 265
V E
Sbjct: 174 RTVFE 178
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/415 (44%), Positives = 262/415 (63%), Gaps = 5/415 (1%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
+P KDV+SWN++IGG+ + EAL F+EML S P+ T S++ CA LGA++
Sbjct: 327 LPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG 386
Query: 61 YWVHNLIIE--KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
W+H I + K + L +LIDMY+KCG I+ A +VF+++ +S WNAMI G A
Sbjct: 387 RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFA 446
Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
+HG A + +F++M + PD ITF+GLL+ACSH G+++ GR F M Y + P+L
Sbjct: 447 MHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKL 506
Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
EHYG M+DLLG +G +EA +I M MEPD V+W +LL AC+ +ELGE N+ +
Sbjct: 507 EHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIK 566
Query: 239 L---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
+ G YVLLSN+Y RW+ R ++ KG++K G S +E+ V+H+F GD+
Sbjct: 567 IEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDK 626
Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
HP + I +L + + GF+P T VL ++ EE KEG L HHSEKLA+A+G++ T
Sbjct: 627 FHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLIST 686
Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
PGT++ I KNLR+C +CH K+IS++ +R II RDR RFH F G+CSC DYW
Sbjct: 687 KPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
Score = 131 bits (330), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 134/290 (46%), Gaps = 43/290 (14%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
+P KDVVSWN+MI G+ + EAL F++M+ + V PD+ T +V+ CA+ G++
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 285
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
VH I + N + ALID+YSKCG+++ A +F+ + DV WN +I G
Sbjct: 286 RQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHM 345
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---KYFDHMRSRYSIQPQ 177
L +A +F +M P+ +T L +L AC+H G ++ GR Y D +
Sbjct: 346 NLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASS 405
Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMT-------------------------------- 205
L +++D+ + G IE A+ + S+
Sbjct: 406 LR--TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRK 463
Query: 206 --MEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCY 253
++PD + + LLSAC L+LG +I R M DY + + Y
Sbjct: 464 IGIQPDDITFVGLLSACSHSGMLDLGR----HIFRTMTQDYKMTPKLEHY 509
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 114/247 (46%), Gaps = 35/247 (14%)
Query: 3 DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
+ +++ WN+M G ++ AL+ + M+S + P+ +TF V+ CA+ A
Sbjct: 96 EPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQ 155
Query: 63 VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT--------------------- 101
+H +++ +L+ + +LI MY + G+++ A +VFD
Sbjct: 156 IHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGY 215
Query: 102 ----------VQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
+ DV WNAMISG A G +A +F M NV PD T + +++A
Sbjct: 216 IENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSA 275
Query: 152 CSHCGLVEEGRKYFDHM-RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
C+ G +E GR+ H+ + L+ A++DL + G +E A GL + + DV
Sbjct: 276 CAQSGSIELGRQV--HLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYK-DV 332
Query: 211 VVWRALL 217
+ W L+
Sbjct: 333 ISWNTLI 339
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 31/158 (19%)
Query: 92 IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
+ A VF T+Q ++ +WN M G A+ A ++ M +LP+S TF +L +
Sbjct: 84 LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKS 143
Query: 152 CSHCGLVEEGRKYFDH---------------MRSRYSIQPQLE---------------HY 181
C+ +EG++ H + S Y +LE Y
Sbjct: 144 CAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSY 203
Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
A++ G+IE A L + ++ DVV W A++S
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIPVK-DVVSWNAMISG 240
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 363 bits (932), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 174/409 (42%), Positives = 258/409 (63%), Gaps = 4/409 (0%)
Query: 6 VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
VV +N+MI G+ R R +EAL FREM ++P++ T SV+ CA LG+L+ W+H
Sbjct: 195 VVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHK 254
Query: 66 LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
+ ++ ALIDM++KCG + A +F+ ++ D W+AMI A HG A
Sbjct: 255 YAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEK 314
Query: 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
+ +F +M NV PD ITFLGLL ACSH G VEEGRKYF M S++ I P ++HYG+MV
Sbjct: 315 SMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMV 374
Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMGG 242
DLL RAG++E+AY I + + P ++WR LL+AC + L+L E I + GG
Sbjct: 375 DLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGG 434
Query: 243 DYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQA 302
DYV+LSN+Y K+W+ +++R++MK + K G S +E+ V+H+F +GD
Sbjct: 435 DYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTK 494
Query: 303 IDKILGSLIQRTKSEGFLPATELVL-MDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
+ + L +++ K G++P T +V+ +++++EKE L +HSEKLA+ +G+L T PGT I
Sbjct: 495 LHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTI 554
Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
R+ KNLR+C DCH+ K+IS + R +++RD RFH FE G CSCGD+W
Sbjct: 555 RVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 114/219 (52%), Gaps = 2/219 (0%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M + D+V +NSM G+ R E F E+L + PD +TF S++ CA AL
Sbjct: 89 MSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEG 148
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
+H L ++ ++ N + LI+MY++C + A+ VFD + V +NAMI+G A
Sbjct: 149 RQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARR 208
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
+A ++F +M+ + P+ IT L +L++C+ G ++ G K+ ++S ++
Sbjct: 209 NRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG-KWIHKYAKKHSFCKYVKV 267
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
A++D+ + G +++A + M + D W A++ A
Sbjct: 268 NTALIDMFAKCGSLDDAVSIFEKMRYK-DTQAWSAMIVA 305
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 33/169 (19%)
Query: 95 AKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
A+ +F+ + D+ ++N+M G + + ++F ++ +LPD+ TF LL AC+
Sbjct: 82 ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141
Query: 155 CGLVEEGRKY----------------------------FDHMRSRYS--IQPQLEHYGAM 184
+EEGR+ D R + ++P + Y AM
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAM 201
Query: 185 VDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGE 230
+ R EA L M ++P+ + ++LS+C L+LG+
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGK 250
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
KD +W++MI + + + ++++ F M S V+PD+ TF ++ C+ G +
Sbjct: 294 KDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKY 353
Query: 64 HNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS-VWNAMISGVAIHG 121
+ ++ K I + +++D+ S+ G ++ A E D + + +W +++ + H
Sbjct: 354 FSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHN 413
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 363 bits (931), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 181/416 (43%), Positives = 263/416 (63%), Gaps = 9/416 (2%)
Query: 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
KD+V W +MI +V + EALR F EM S ++PD + SVI CA LG L+ A WV
Sbjct: 307 KDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWV 366
Query: 64 HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
H+ I +E ++ ALI+MY+KCG + ++VF+ + R +V W++MI+ +++HG A
Sbjct: 367 HSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEA 426
Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
+DA ++F +M+ NV P+ +TF+G+L CSH GLVEEG+K F M Y+I P+LEHYG
Sbjct: 427 SDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGC 486
Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
MVDL GRA + EA +I SM + +VV+W +L+SACR LELG+ A I+ +
Sbjct: 487 MVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDH 546
Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
G VL+SN+Y +RW+ N+R +M++K V K +G S ++ G H+F GD+ H ++
Sbjct: 547 DGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQS 606
Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
I L ++ + K G++P VL+DV EEEK+ + HSEKLAL +G++ E
Sbjct: 607 NEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEE 666
Query: 361 ------IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
IRI KNLR+C DCH + K++S++ R IIVRDR RFH ++ GLCSC DYW
Sbjct: 667 KDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 115/250 (46%), Gaps = 33/250 (13%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M +DVV+WN+MI + R DEA + F EM S V PD+ +++ C R G + +
Sbjct: 172 MSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYN 231
Query: 61 YWVHNLIIEKKIEL-------------------------------NFILSAALIDMYSKC 89
++ +IE + + N +S A++ YSKC
Sbjct: 232 RAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKC 291
Query: 90 GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149
G++ A+ +FD ++ D+ W MIS +A +F +M + PD ++ ++
Sbjct: 292 GRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVI 351
Query: 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209
+AC++ G++++ K+ ++ +L A++++ + G ++ + M +
Sbjct: 352 SACANLGILDKA-KWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRR-N 409
Query: 210 VVVWRALLSA 219
VV W ++++A
Sbjct: 410 VVSWSSMINA 419
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 106/230 (46%), Gaps = 3/230 (1%)
Query: 2 PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
P + +V +N + R++ + F++ + D+F+F ++ +++ AL
Sbjct: 73 PPESIV-FNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGM 131
Query: 62 WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
+H + + + + +DMY+ CG+I A+ VFD + DV WN MI G
Sbjct: 132 ELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFG 191
Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
L +A +F +M+ NV+PD + +++AC G + R ++ + ++
Sbjct: 192 LVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIEN-DVRMDTHLL 250
Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV 231
A+V + AG ++ A M++ ++ V A++S RL+ +V
Sbjct: 251 TALVTMYAGAGCMDMAREFFRKMSVR-NLFVSTAMVSGYSKCGRLDDAQV 299
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 2/123 (1%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
MP ++VVSW+SMI + +AL F M VEP++ TF V+YGC+ G +
Sbjct: 405 MPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEG 464
Query: 61 YWVH-NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVA 118
+ ++ E I ++D++ + ++ A EV +++ ++V +W +++S
Sbjct: 465 KKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACR 524
Query: 119 IHG 121
IHG
Sbjct: 525 IHG 527
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 362 bits (928), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 178/412 (43%), Positives = 262/412 (63%), Gaps = 4/412 (0%)
Query: 3 DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEP-DKFTFASVIYGCARLGALNHAY 61
DKD VS+NS++ + ++ +EA FR ++ +KV + T ++V+ + GAL
Sbjct: 248 DKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGK 307
Query: 62 WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
+H+ +I +E + I+ ++IDMY KCG+++ A++ FD ++ +V W AMI+G +HG
Sbjct: 308 CIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHG 367
Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
AA A +F M V P+ ITF+ +L ACSH GL EG ++F+ M+ R+ ++P LEHY
Sbjct: 368 HAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHY 427
Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
G MVDLLGRAG +++AY LI M M+PD ++W +LL+ACR K +EL E+++ + L
Sbjct: 428 GCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDS 487
Query: 242 ---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHP 298
G Y+LLS++Y RW E VR IMK +G+ K G S LEL G +H F GD HP
Sbjct: 488 SNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHP 547
Query: 299 EAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPG 358
+ + I + L L ++ G++ T V DV EEEKE L HSEKLA+A+GI+ T PG
Sbjct: 548 QREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPG 607
Query: 359 TEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
+ + + KNLR+C DCH+ IK+IS+++ R +VRD RFH F+ G CSCGDYW
Sbjct: 608 STVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 134/320 (41%), Gaps = 56/320 (17%)
Query: 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
DV SWNS+I R+ EAL F M + P + +F I C+ L + H
Sbjct: 40 DVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTH 99
Query: 65 NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
+ + +S+ALI MYS CGK++ A++VFD + + ++ W +MI G ++G A
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNAL 159
Query: 125 DASAIFTKMEMFNVLPDSITFL---GLLTACSHC------GLVE---------------- 159
DA ++F + + D FL GL++ S C GL E
Sbjct: 160 DAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVS 219
Query: 160 -------------EG-----RKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG-- 199
EG RK FD + + + Y +++ + ++G EA+
Sbjct: 220 VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVS-----YNSIMSVYAQSGMSNEAFEVF 274
Query: 200 --LITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLS----NMYCY 253
L+ + + + + +L A L +G+ + R+ D V++ +MYC
Sbjct: 275 RRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCK 334
Query: 254 LKRWDTAENVREIMKKKGVR 273
R +TA + MK K VR
Sbjct: 335 CGRVETARKAFDRMKNKNVR 354
Score = 88.6 bits (218), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 124/267 (46%), Gaps = 52/267 (19%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTF------ASVIYGCARL 54
+P +++VSW SMI G+ N +A+ F+++L + + D F SVI C+R+
Sbjct: 137 IPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRV 196
Query: 55 GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK--IQMAKEVFDTVQRNDVSVWNA 112
A +H+ +I++ + + L+D Y+K G+ + +A+++FD + D +N+
Sbjct: 197 PAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNS 256
Query: 113 MISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSH----------------- 154
++S A G++ +A +F ++ V+ ++IT +L A SH
Sbjct: 257 IMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRM 316
Query: 155 ------------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196
CG VE RK FD M+++ + + AM+ G GH +
Sbjct: 317 GLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNK-----NVRSWTAMIAGYGMHGHAAK 371
Query: 197 AYGLITSMT---MEPDVVVWRALLSAC 220
A L +M + P+ + + ++L+AC
Sbjct: 372 ALELFPAMIDSGVRPNYITFVSVLAAC 398
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 8/125 (6%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M +K+V SW +MI G+ + +AL F M+ S V P+ TF SV+ C+ G
Sbjct: 348 MKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEG 407
Query: 61 Y-WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR----NDVSVWNAMIS 115
+ W + + +E ++D+ + G +Q A +D +QR D +W+++++
Sbjct: 408 WRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKA---YDLIQRMKMKPDSIIWSSLLA 464
Query: 116 GVAIH 120
IH
Sbjct: 465 ACRIH 469
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 360 bits (925), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 178/413 (43%), Positives = 256/413 (61%), Gaps = 4/413 (0%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
+ + +VSWN+MI GF +N R +AL +F +M S V+PD FT+ SVI A L +HA
Sbjct: 398 LQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHA 457
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
W+H +++ ++ N ++ AL+DMY+KCG I +A+ +FD + V+ WNAMI G H
Sbjct: 458 KWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTH 517
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
G A +F +M+ + P+ +TFL +++ACSH GLVE G K F M+ YSI+ ++H
Sbjct: 518 GFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDH 577
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
YGAMVDLLGRAG + EA+ I M ++P V V+ A+L AC+ K + E A + L
Sbjct: 578 YGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELN 637
Query: 241 ---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
GG +VLL+N+Y W+ VR M ++G+RK+ G S +E+ +H F +G +H
Sbjct: 638 PDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAH 697
Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
P+++ I L LI K G++P T LVL V + KE L HSEKLA+++G+L T+
Sbjct: 698 PDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTA 756
Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
GT I + KNLR+C DCH+ K IS + R I+VRD RFH F+ G CSCGDYW
Sbjct: 757 GTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 113/222 (50%), Gaps = 2/222 (0%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M +++VVSWNSMI +V+N EA+ F++ML V+P + ++ CA LG L
Sbjct: 297 MLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERG 356
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
++H L +E ++ N + +LI MY KC ++ A +F +Q + WNAMI G A +
Sbjct: 357 RFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQN 416
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
G DA F++M V PD+ T++ ++TA + + K+ + R + +
Sbjct: 417 GRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHA-KWIHGVVMRSCLDKNVFV 475
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRT 222
A+VD+ + G I A LI M E V W A++ T
Sbjct: 476 TTALVDMYAKCGAIMIAR-LIFDMMSERHVTTWNAMIDGYGT 516
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 110/214 (51%), Gaps = 4/214 (1%)
Query: 7 VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
V +++M+ GF + + D+AL+FF M VEP + F ++ C L +H L
Sbjct: 101 VLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGL 160
Query: 67 IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
+++ L+ L +MY+KC ++ A++VFD + D+ WN +++G + +G+A A
Sbjct: 161 LVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMA 220
Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMV 185
+ M N+ P IT + +L A S L+ G++ + MRS + + A+V
Sbjct: 221 LEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNIS--TALV 278
Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
D+ + G +E A L M +E +VV W +++ A
Sbjct: 279 DMYAKCGSLETARQLFDGM-LERNVVSWNSMIDA 311
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 109/220 (49%), Gaps = 8/220 (3%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
MP++D+VSWN+++ G+ +N AL + M ++P T SV+ + L ++
Sbjct: 196 MPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVG 255
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
+H + + +S AL+DMY+KCG ++ A+++FD + +V WN+MI +
Sbjct: 256 KEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQN 315
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
+A IF KM V P ++ +G L AC+ G +E GR + + + +
Sbjct: 316 ENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR-FIHKLSVELGLDRNVSV 374
Query: 181 YGAMVDLLGRAGHIEEA---YGLITSMTMEPDVVVWRALL 217
+++ + + ++ A +G + S T+ V W A++
Sbjct: 375 VNSLISMYCKCKEVDTAASMFGKLQSRTL----VSWNAMI 410
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 359 bits (922), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 178/413 (43%), Positives = 250/413 (60%), Gaps = 5/413 (1%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M D + WNS+IGGF +N+R D AL F+ M + ++ T SV+ C L L
Sbjct: 220 MVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 279
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
H I+ K + + IL+ AL+DMY KCG ++ A VF+ ++ DV W+ MISG+A +
Sbjct: 280 MQAHVHIV--KYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQN 337
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
G + +A +F +M+ P+ IT +G+L ACSH GL+E+G YF M+ Y I P EH
Sbjct: 338 GYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREH 397
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
YG M+DLLG+AG +++A L+ M EPD V WR LL ACR + + L E A ++ +
Sbjct: 398 YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALD 457
Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
G Y LLSN+Y ++WD+ E +R M+ +G++K G SW+E+ IH F GD SH
Sbjct: 458 PEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSH 517
Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
P+ + K L LI R G++P T VL D+ E+ E +L HHSEKLALA+G++
Sbjct: 518 PQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPI 577
Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
IRI KNLRIC DCH + K+ S+L R I++RD IR+H F+ G CSCGDYW
Sbjct: 578 EKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 115/219 (52%), Gaps = 7/219 (3%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
MP ++V+SW +MI + + +AL ML V P+ +T++SV+ C ++
Sbjct: 122 MPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSC---NGMSDV 178
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
+H II++ +E + + +ALID+++K G+ + A VFD + D VWN++I G A +
Sbjct: 179 RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQN 238
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
+ A +F +M+ + + T +L AC+ L+E G + H+ +Y L +
Sbjct: 239 SRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI-VKYDQDLILNN 297
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
A+VD+ + G +E+A + M E DV+ W ++S
Sbjct: 298 --ALVDMYCKCGSLEDALRVFNQMK-ERDVITWSTMISG 333
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 119/295 (40%), Gaps = 62/295 (21%)
Query: 25 ALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV-HNLIIEKKIELNFILSAALI 83
A++ + S + D T++ +I C A++ + +L + F+++ LI
Sbjct: 45 AMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNV-LI 103
Query: 84 DMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSI 143
+MY K + A ++FD + + +V W MIS + + A + M NV P+
Sbjct: 104 NMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVY 163
Query: 144 TFLGLLTACS--------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIE 195
T+ +L +C+ HCG+++EG + +RS A++D+ + G E
Sbjct: 164 TYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRS------------ALIDVFAKLGEPE 211
Query: 196 EAYGLITSMTMEPDVVVWRAL-----------------------------------LSAC 220
+A + M + D +VW ++ L AC
Sbjct: 212 DALSVFDEM-VTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRAC 270
Query: 221 RTFKRLELGEVAIVNISRLMGGDYVL---LSNMYCYLKRWDTAENVREIMKKKGV 272
LELG A V+I + D +L L +MYC + A V MK++ V
Sbjct: 271 TGLALLELGMQAHVHIVKY-DQDLILNNALVDMYCKCGSLEDALRVFNQMKERDV 324
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 359 bits (921), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 180/425 (42%), Positives = 265/425 (62%), Gaps = 15/425 (3%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREM--LSSKV---------EPDKFTFASVIY 49
M D+D+V+WN+MI G+V + ++AL +M L KV +P+ T +++
Sbjct: 466 MEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILP 525
Query: 50 GCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV 109
CA L AL +H I+ + + + +AL+DMY+KCG +QM+++VFD + + +V
Sbjct: 526 SCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVIT 585
Query: 110 WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169
WN +I +HG +A + M + V P+ +TF+ + ACSH G+V+EG + F M+
Sbjct: 586 WNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMK 645
Query: 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV-VWRALLSACRTFKRLEL 228
Y ++P +HY +VDLLGRAG I+EAY L+ M + + W +LL A R LE+
Sbjct: 646 PDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEI 705
Query: 229 GEVAIVNISRL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAG 285
GE+A N+ +L + YVLL+N+Y WD A VR MK++GVRK G SW+E
Sbjct: 706 GEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGD 765
Query: 286 VIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEK 345
+H+F AGD SHP+++ + L +L +R + EG++P T VL +V E+EKE L HSEK
Sbjct: 766 EVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEK 825
Query: 346 LALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCS 405
LA+A+GIL TSPGT IR++KNLR+C+DCH K IS+++ R II+RD RFHRF+ G CS
Sbjct: 826 LAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCS 885
Query: 406 CGDYW 410
CGDYW
Sbjct: 886 CGDYW 890
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 111/222 (50%), Gaps = 12/222 (5%)
Query: 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALN----- 58
+D+V+WN+++ +N + EAL + REM+ VEPD+FT +SV+ C+ L L
Sbjct: 265 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324
Query: 59 HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
HAY + N ++ N + +AL+DMY C ++ + VFD + + +WNAMI+G +
Sbjct: 325 HAYALKN----GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYS 380
Query: 119 IHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
+ +A +F M E +L +S T G++ AC G + R + +
Sbjct: 381 QNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDR 440
Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
++D+ R G I+ A + M + D+V W +++
Sbjct: 441 FVQ-NTLMDMYSRLGKIDIAMRIFGKME-DRDLVTWNTMITG 480
Score = 91.7 bits (226), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 114/231 (49%), Gaps = 14/231 (6%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
M D+ + WN+MI G+ +N EAL F M S+ + + T A V+ C R GA +
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423
Query: 60 AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
+H ++++ ++ + + L+DMYS+ GKI +A +F ++ D+ WN MI+G
Sbjct: 424 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVF 483
Query: 120 HGLAADASAIFTKMEMF-----------NVLPDSITFLGLLTACSHCGLVEEGRKYFDHM 168
DA + KM+ ++ P+SIT + +L +C+ + +G++ +
Sbjct: 484 SEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYA 543
Query: 169 RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
+ ++ + A+VD+ + G ++ + + + + +V+ W ++ A
Sbjct: 544 -IKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMA 592
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 101/225 (44%), Gaps = 15/225 (6%)
Query: 3 DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARL-------- 54
+++ VSWNS+I +++ AL FR ML VEP FT SV+ C+ L
Sbjct: 161 ERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMM 220
Query: 55 GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMI 114
G HAY + +K ELN + L+ MY K GK+ +K + + D+ WN ++
Sbjct: 221 GKQVHAYGL------RKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVL 274
Query: 115 SGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI 174
S + + +A +M + V PD T +L ACSH ++ G++ + S+
Sbjct: 275 SSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSL 334
Query: 175 QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
A+VD+ + + M + + +W A+++
Sbjct: 335 DENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKIGLWNAMIAG 378
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 107/224 (47%), Gaps = 8/224 (3%)
Query: 9 WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
W ++ VR+ EA+ + +M+ ++PD + F +++ A L + +H +
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 69 EKKIELNFILSA-ALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAIHGLAADA 126
+ ++ + A L+++Y KCG +VFD + +RN VS WN++IS + A
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVS-WNSLISSLCSFEKWEMA 183
Query: 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY--GAM 184
F M NV P S T + ++TACS+ + EG + + + +L + +
Sbjct: 184 LEAFRCMLDENVEPSSFTLVSVVTACSNLPM-PEGLMMGKQVHAYGLRKGELNSFIINTL 242
Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA-CRTFKRLE 227
V + G+ G + + L+ S D+V W +LS+ C+ + LE
Sbjct: 243 VAMYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSSLCQNEQLLE 285
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 357 bits (916), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 183/418 (43%), Positives = 255/418 (61%), Gaps = 8/418 (1%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREM---LSSKVEPDKFTFASVIYGCARLGAL 57
+P +D VSWN + ++RN R + L F +M + V+PD T + CA LGAL
Sbjct: 174 IPKRDTVSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGAL 233
Query: 58 NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117
+ VH+ I E + LS L+ MYS+CG + A +VF ++ +V W A+ISG+
Sbjct: 234 DFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGL 293
Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS-RYSIQP 176
A++G +A F +M F + P+ T GLL+ACSH GLV EG +FD MRS + I+P
Sbjct: 294 AMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKP 353
Query: 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNI 236
L HYG +VDLLGRA +++AY LI SM M+PD +WR LL ACR +ELGE I ++
Sbjct: 354 NLHHYGCVVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHL 413
Query: 237 SRLMG---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG 293
L GDYVLL N Y + +W+ +R +MK+K + G S +EL G +H+F
Sbjct: 414 IELKAEEAGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVD 473
Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDV-SEEEKEGNLYHHSEKLALAYGI 352
D SHP + I K+L + Q+ K G++ L ++ SEEEK L +HSEKLA+A+GI
Sbjct: 474 DVSHPRKEEIYKMLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGI 533
Query: 353 LKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
L T PGT IR++KNLR C DCH++ K +S + R++IVRDR RFH F+GG CSC D+W
Sbjct: 534 LVTPPGTTIRVTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 6/214 (2%)
Query: 10 NSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
N+MI F + E R FR + +S + + + + + C + G L +H I
Sbjct: 81 NTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGLQIHGKIF 140
Query: 69 EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
+ +L L+D+YS C A +VFD + + D WN + S + D
Sbjct: 141 SDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLV 200
Query: 129 IFTKMEM---FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185
+F KM+ V PD +T L L AC++ G ++ G++ D + + L +V
Sbjct: 201 LFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFI-DENGLSGALNLSNTLV 259
Query: 186 DLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
+ R G +++AY + M E +VV W AL+S
Sbjct: 260 SMYSRCGSMDKAYQVFYGMR-ERNVVSWTALISG 292
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 355 bits (911), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 172/413 (41%), Positives = 253/413 (61%), Gaps = 3/413 (0%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
MP++D ++WN+MI G+ + EAL F M V+ + SV+ C +LGAL+
Sbjct: 200 MPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQG 259
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
W H+ I KI++ L+ L+D+Y+KCG ++ A EVF ++ +V W++ ++G+A++
Sbjct: 260 RWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMN 319
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
G +F+ M+ V P+++TF+ +L CS G V+EG+++FD MR+ + I+PQLEH
Sbjct: 320 GFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEH 379
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
YG +VDL RAG +E+A +I M M+P VW +LL A R +K LELG +A ++ +
Sbjct: 380 YGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELE 439
Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
G YVLLSN+Y WD +VR+ MK KGVRK G S +E+ G +H+F GD+SH
Sbjct: 440 TANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSH 499
Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
P+ ID + + +R + G+ T V+ D+ EEEKE L HSEK A+A+GI+
Sbjct: 500 PKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKE 559
Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
IRI KNLR+C DCH MIS++ R IIVRDR RFH F+ G CSC +W
Sbjct: 560 DVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 109/243 (44%), Gaps = 35/243 (14%)
Query: 10 NSMIGGFVRNARFDEALRFFREMLSS--KVEPDKFTFASVIYGCARLGALNHAYWVHNLI 67
NSMI ++ +++ F+R +LSS ++PD +T ++ C L VH +
Sbjct: 75 NSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMT 134
Query: 68 IEKKIE-------------------------------LNFILSAALIDMYSKCGKIQMAK 96
I + + +F+ A++ ++CG + A+
Sbjct: 135 IRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFAR 194
Query: 97 EVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156
++F+ + D WNAMISG A G + +A +F M++ V + + + +L+AC+ G
Sbjct: 195 KLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLG 254
Query: 157 LVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRAL 216
+++GR ++ R I+ + +VDL + G +E+A + M E +V W +
Sbjct: 255 ALDQGRWAHSYIE-RNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGME-EKNVYTWSSA 312
Query: 217 LSA 219
L+
Sbjct: 313 LNG 315
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 352 bits (903), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 184/414 (44%), Positives = 254/414 (61%), Gaps = 4/414 (0%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
MP+K++VSWN++I G V+ + F+EA+ F M S + V D T S+ C LGAL+
Sbjct: 429 MPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDL 488
Query: 60 AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
A W++ I + I+L+ L L+DM+S+CG + A +F+++ DVS W A I +A+
Sbjct: 489 AKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAM 548
Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
G A A +F M + PD + F+G LTACSH GLV++G++ F M + + P+
Sbjct: 549 AGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDV 608
Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
HYG MVDLLGRAG +EEA LI M MEP+ V+W +LL+ACR +E+ A I L
Sbjct: 609 HYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVL 668
Query: 240 M---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
G YVLLSN+Y RW+ VR MK+KG+RK G S +++ G H+F +GD S
Sbjct: 669 APERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDES 728
Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
HPE I+ +L + QR G +P VLMDV E+EK L HSEKLA+AYG++ ++
Sbjct: 729 HPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSN 788
Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
GT IRI KNLR+C DCHS+ K S++ R II+RD RFH G CSCGD+W
Sbjct: 789 KGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 115/232 (49%), Gaps = 8/232 (3%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALR-FFREMLSSKVEPDKFTFASVIYGCARLGALNH 59
M +++VVSW SMI G+ R +A+ FFR + +V P+ T VI CA+L L
Sbjct: 195 MSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLET 254
Query: 60 AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
V+ I IE+N ++ +AL+DMY KC I +AK +FD +++ + NAM S
Sbjct: 255 GEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVR 314
Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
GL +A +F M V PD I+ L +++CS + G+ ++ R +
Sbjct: 315 QGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVL-RNGFESWDN 373
Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV 231
A++D+ + + A+ + M+ VV W ++++ +E GEV
Sbjct: 374 ICNALIDMYMKCHRQDTAFRIFDRMS-NKTVVTWNSIVAG-----YVENGEV 419
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 102/190 (53%), Gaps = 2/190 (1%)
Query: 9 WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
+NS+I G+ + +EA+ F M++S + PDK+TF + CA+ A + +H LI+
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 69 EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
+ + + +L+ Y++CG++ A++VFD + +V W +MI G A A DA
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221
Query: 129 IFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDL 187
+F +M V P+S+T + +++AC+ +E G K + +R+ I+ A+VD+
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNS-GIEVNDLMVSALVDM 280
Query: 188 LGRAGHIEEA 197
+ I+ A
Sbjct: 281 YMKCNAIDVA 290
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 98/236 (41%), Gaps = 34/236 (14%)
Query: 10 NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIE 69
N+M +VR EAL F M+ S V PD+ + S I C++L + H ++
Sbjct: 306 NAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLR 365
Query: 70 KKIELNFILSAALIDMYSKC-------------------------------GKIQMAKEV 98
E + ALIDMY KC G++ A E
Sbjct: 366 NGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWET 425
Query: 99 FDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME-MFNVLPDSITFLGLLTACSHCGL 157
F+T+ ++ WN +ISG+ L +A +F M+ V D +T + + +AC H G
Sbjct: 426 FETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGA 485
Query: 158 VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVW 213
++ K+ + + IQ + +VD+ R G E A + S+T DV W
Sbjct: 486 LDLA-KWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLT-NRDVSAW 539
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 45/179 (25%)
Query: 92 IQMAKEVFDTVQRNDVS-VWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150
+ AKEVF+ + ++N++I G A GL +A +F +M + PD TF L+
Sbjct: 83 LSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLS 142
Query: 151 AC-----------------------------------SHCGLVEEGRKYFDHMRSRYSIQ 175
AC + CG ++ RK FD M R +
Sbjct: 143 ACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVS 202
Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTME----PDVVVWRALLSACRTFKRLELGE 230
+ +M+ R ++A L M + P+ V ++SAC + LE GE
Sbjct: 203 -----WTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGE 256
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 350 bits (897), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 180/419 (42%), Positives = 256/419 (61%), Gaps = 12/419 (2%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
MP+K +V+WNS++ GF +N DEA++ F +M S EPD TF S++ CA+ GA++
Sbjct: 168 MPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLG 227
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
WVH II + ++LN L ALI++YS+CG + A+EVFD ++ +V+ W AMIS H
Sbjct: 228 SWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTH 287
Query: 121 GLAADASAIFTKME-MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
G A +F KME +P+++TF+ +L+AC+H GLVEEGR + M Y + P +E
Sbjct: 288 GYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVE 347
Query: 180 HYGAMVDLLGRAGHIEEAYGLI-----TSMTMEPDVVVWRALLSACRTFKRLELG-EVA- 232
H+ MVD+LGRAG ++EAY I T P +W A+L AC+ + +LG E+A
Sbjct: 348 HHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAP--ALWTAMLGACKMHRNYDLGVEIAK 405
Query: 233 -IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFK 291
++ + G +V+LSN+Y + D ++R+ M + +RK G S +E+ + F
Sbjct: 406 RLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFS 465
Query: 292 AGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYG 351
GD SH E I + L +LI R K G+ P +E V+ V EEEKE L +HSEKLA+A+G
Sbjct: 466 MGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFG 525
Query: 352 ILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
+LKT I I KNLRIC DCHS K IS + R I VRD++RFH F+ G CSC DYW
Sbjct: 526 LLKTVD-VAITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLDYW 583
Score = 122 bits (305), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 139/289 (48%), Gaps = 6/289 (2%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
+P D +NS+I + + ++R MLSS V P +TF SVI CA L AL
Sbjct: 67 VPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIG 126
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
VH + L+ + AAL+ YSKCG ++ A++VFD + + WN+++SG +
Sbjct: 127 KGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQN 186
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
GLA +A +F +M PDS TF+ LL+AC+ G V G ++ S + ++
Sbjct: 187 GLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISE-GLDLNVKL 245
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
A+++L R G + +A + M E +V W A++SA T G+ A V + M
Sbjct: 246 GTALINLYSRCGDVGKAREVFDKMK-ETNVAAWTAMISAYGTHG---YGQQA-VELFNKM 300
Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQ 289
D + N ++ + + + + V K KS+ + GV H
Sbjct: 301 EDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHH 349
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 349 bits (895), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 178/411 (43%), Positives = 251/411 (61%), Gaps = 3/411 (0%)
Query: 3 DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
+K++V+WN+MI G+V N+R ++ L+ FR ML + P+ +S + GC+ L AL
Sbjct: 246 NKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQ 305
Query: 63 VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
+H ++ + + + +LI MY KCG++ A ++F+ +++ DV WNAMISG A HG
Sbjct: 306 IHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGN 365
Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
A A +F +M + PD ITF+ +L AC+H GLV G YF+ M Y ++PQ +HY
Sbjct: 366 ADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYT 425
Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRL 239
MVDLLGRAG +EEA LI SM P V+ LL ACR K +EL E A ++ ++
Sbjct: 426 CMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQ 485
Query: 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299
YV L+N+Y RW+ VR+ MK+ V K G SW+E+ +H F++ DR HPE
Sbjct: 486 NAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPE 545
Query: 300 AQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
+I K L L ++ K G+ P E L +V EE+KE L HSEKLA+A+G +K G+
Sbjct: 546 LDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGS 605
Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
+I++ KNLRIC DCH IK IS + +R IIVRD RFH F+ G CSCGDYW
Sbjct: 606 QIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 107/221 (48%), Gaps = 13/221 (5%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
MP KD SWN+MI G+ R ++A RE+ S +E ++ ++ ++I G G L A
Sbjct: 150 MPFKDAASWNTMITGYARRGEMEKA----RELFYSMMEKNEVSWNAMISGYIECGDLEKA 205
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD--TVQRNDVSVWNAMISGVA 118
+ + + + A+I Y K K+++A+ +F TV +N V+ WNAMISG
Sbjct: 206 SHFFKVAPVRGV----VAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVT-WNAMISGYV 260
Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
+ D +F M + P+S L CS ++ GR+ + S+ ++ +
Sbjct: 261 ENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQ-IHQIVSKSTLCNDV 319
Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
+++ + + G + +A+ L M + DVV W A++S
Sbjct: 320 TALTSLISMYCKCGELGDAWKLFEVMK-KKDVVAWNAMISG 359
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 4/123 (3%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALN-- 58
M KDVV+WN+MI G+ ++ D+AL FREM+ +K+ PD TF +V+ C G +N
Sbjct: 345 MKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIG 404
Query: 59 HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGV 117
AY+ +++ + K+E ++D+ + GK++ A ++ ++ R +V+ ++
Sbjct: 405 MAYF-ESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGAC 463
Query: 118 AIH 120
+H
Sbjct: 464 RVH 466
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 83/197 (42%), Gaps = 15/197 (7%)
Query: 42 FTFASVIYGCARLGALNHAYWV-HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD 100
F +I C R G ++ A V H + + I N + LI + ++ A ++FD
Sbjct: 62 FPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWN----SLLIGISKDPSRMMEAHQLFD 117
Query: 101 TVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE 160
+ D +N M+S + A + F +M D+ ++ ++T + G +E+
Sbjct: 118 EIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMP----FKDAASWNTMITGYARRGEMEK 173
Query: 161 GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
R+ F M + + + AM+ G +E+A + VV W A+++
Sbjct: 174 ARELFYSMMEKNEVS-----WNAMISGYIECGDLEKASHFFKVAPVR-GVVAWTAMITGY 227
Query: 221 RTFKRLELGEVAIVNIS 237
K++EL E +++
Sbjct: 228 MKAKKVELAEAMFKDMT 244
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 348 bits (893), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 168/413 (40%), Positives = 251/413 (60%), Gaps = 3/413 (0%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
+P D V+W +MI G + N + A F +M V PD+FT A++ + L AL
Sbjct: 578 IPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQG 637
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
+H ++ + + +L+DMY+KCG I A +F ++ +++ WNAM+ G+A H
Sbjct: 638 RQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQH 697
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
G + +F +M+ + PD +TF+G+L+ACSH GLV E K+ M Y I+P++EH
Sbjct: 698 GEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEH 757
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE---VAIVNIS 237
Y + D LGRAG +++A LI SM+ME ++R LL+ACR E G+ ++ +
Sbjct: 758 YSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELE 817
Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
L YVLLSNMY +WD + R +MK V+K G SW+E+ IH F DRS+
Sbjct: 818 PLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSN 877
Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
+ + I + + +I+ K EG++P T+ L+DV EEEKE LY+HSEKLA+A+G+L T P
Sbjct: 878 RQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPP 937
Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
T IR+ KNLR+C DCH+ +K I+++ R I++RD RFHRF+ G+CSCGDYW
Sbjct: 938 STPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 111/214 (51%), Gaps = 4/214 (1%)
Query: 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
D+V+WN+M+ G+ ++ + L+ F M D FT A+V C L A+N VH
Sbjct: 481 DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVH 540
Query: 65 NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
I+ +L+ +S+ ++DMY KCG + A+ FD++ D W MISG +G
Sbjct: 541 AYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEE 600
Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK-YFDHMRSRYSIQPQLEHYGA 183
A +F++M + VLPD T L A S +E+GR+ + + ++ + P + +
Sbjct: 601 RAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVG--TS 658
Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
+VD+ + G I++AY L + M ++ W A+L
Sbjct: 659 LVDMYAKCGSIDDAYCLFKRIEM-MNITAWNAML 691
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 81/149 (54%)
Query: 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
+++ N + ++ + ++ L+ F +M+ S VE D+ TF ++ ++ +L VH
Sbjct: 279 EIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVH 338
Query: 65 NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
+ ++ ++L +S +LI+MY K K A+ VFD + D+ WN++I+G+A +GL
Sbjct: 339 CMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEV 398
Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACS 153
+A +F ++ + PD T +L A S
Sbjct: 399 EAVCLFMQLLRCGLKPDQYTMTSVLKAAS 427
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 115/247 (46%), Gaps = 15/247 (6%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG-ALNH 59
M ++D++SWNS+I G +N EA+ F ++L ++PD++T SV+ + L L+
Sbjct: 376 MSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSL 435
Query: 60 AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
+ VH I+ + +S ALID YS+ ++ A+ +F+ D+ WNAM++G
Sbjct: 436 SKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQ 494
Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQL 178
+F M D T + C + +G++ + ++S Y + +
Sbjct: 495 SHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWV 554
Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE----VAIV 234
++D+ + G + A S+ + PD V W ++S C +E GE +
Sbjct: 555 S--SGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTMISGC-----IENGEEERAFHVF 606
Query: 235 NISRLMG 241
+ RLMG
Sbjct: 607 SQMRLMG 613
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 126/282 (44%), Gaps = 14/282 (4%)
Query: 1 MPDKDVVSWNSMIGGFVRNA-----RFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG 55
MPD+D+VSWNS++ + +++ +A FR + V + T + ++ C G
Sbjct: 100 MPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSG 159
Query: 56 ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
+ + H + ++ + ++ AL+++Y K GK++ K +F+ + DV +WN M+
Sbjct: 160 YVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLK 219
Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
G +A + + + P+ IT L LL S K F + S+
Sbjct: 220 AYLEMGFKEEAIDLSSAFHSSGLNPNEIT-LRLLARISGDDSDAGQVKSFANGNDASSVS 278
Query: 176 PQLEHYGAMVDLL--GRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI 233
+ + + L G+ + + + + +E D V + +L+ L LG+ +
Sbjct: 279 EIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQ-QV 337
Query: 234 VNISRLMGGDYVL-----LSNMYCYLKRWDTAENVREIMKKK 270
++ +G D +L L NMYC L+++ A V + M ++
Sbjct: 338 HCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSER 379
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 7/143 (4%)
Query: 82 LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA-----DASAIFTKMEMF 136
LI MYSKCG + A+ VFD + D+ WN++++ A A +F +
Sbjct: 80 LISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQD 139
Query: 137 NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196
V +T +L C H G V + + + + GA+V++ + G ++E
Sbjct: 140 VVYTSRMTLSPMLKLCLHSGYVWASESFHGYA-CKIGLDGDEFVAGALVNIYLKFGKVKE 198
Query: 197 AYGLITSMTMEPDVVVWRALLSA 219
L M DVV+W +L A
Sbjct: 199 GKVLFEEMPYR-DVVLWNLMLKA 220
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 348 bits (892), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 167/409 (40%), Positives = 249/409 (60%), Gaps = 3/409 (0%)
Query: 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
+VVSW S+I G +N + EAL FREM + V+P+ T S++ C + AL H H
Sbjct: 352 NVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTH 411
Query: 65 NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
+ + N + +ALIDMY+KCG+I +++ VF+ + ++ WN++++G ++HG A
Sbjct: 412 GFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAK 471
Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
+ +IF + + PD I+F LL+AC GL +EG KYF M Y I+P+LEHY M
Sbjct: 472 EVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCM 531
Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL---MG 241
V+LLGRAG ++EAY LI M EPD VW ALL++CR ++L E+A + L
Sbjct: 532 VNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENP 591
Query: 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301
G YVLLSN+Y W +++R M+ G++K+ G SW+++ ++ AGD+SHP+
Sbjct: 592 GTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQID 651
Query: 302 AIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI 361
I + + + + + G P + L DV E+E+E L+ HSEKLA+ +G+L T GT +
Sbjct: 652 QITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPL 711
Query: 362 RISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
++ KNLRIC DCH+ IK IS R I +RD RFH F+ G+CSCGD+W
Sbjct: 712 QVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 114/253 (45%), Gaps = 39/253 (15%)
Query: 3 DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
+ ++VSWN ++ GF R+ EA+ F+++ PD+ T +SV+ LN
Sbjct: 214 EANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRL 273
Query: 63 VHNLIIEKKIELNFILSAALIDMYSKCGK------------------------------- 91
+H +I++ + + + +A+IDMY K G
Sbjct: 274 IHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGL 333
Query: 92 IQMAKEVFD-----TVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFL 146
+ A E+F+ T++ N VS W ++I+G A +G +A +F +M++ V P+ +T
Sbjct: 334 VDKALEMFELFKEQTMELNVVS-WTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIP 392
Query: 147 GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM 206
+L AC + + GR R + + A++D+ + G I + ++ +M
Sbjct: 393 SMLPACGNIAALGHGRSTHG-FAVRVHLLDNVHVGSALIDMYAKCGRINLSQ-IVFNMMP 450
Query: 207 EPDVVVWRALLSA 219
++V W +L++
Sbjct: 451 TKNLVCWNSLMNG 463
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 99/237 (41%), Gaps = 39/237 (16%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
+PD + S++S+I + F +++ F M S + PD ++ CA L A
Sbjct: 76 IPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVG 135
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSV----------- 109
+H + ++++ + ++ MY +CG++ A++VFD + DV
Sbjct: 136 KQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARK 195
Query: 110 ------------------------WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145
WN ++SG G +A +F K+ PD +T
Sbjct: 196 GCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTV 255
Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
+L + ++ GR ++ + ++ + AM+D+ G++GH+ YG+I+
Sbjct: 256 SSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCV-ISAMIDMYGKSGHV---YGIIS 308
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
MP K++V WNS++ GF + + E + F ++ ++++PD +F S++ C ++G +
Sbjct: 449 MPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEG 508
Query: 61 YWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMIS 115
+ ++ E+ I+ + ++++ + GK+Q A ++ + D VW A+++
Sbjct: 509 WKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLN 565
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 348 bits (892), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 167/413 (40%), Positives = 251/413 (60%), Gaps = 3/413 (0%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M DK V+W+SM+ G+V+N ++EAL +R +E ++FT +SVI C+ L AL
Sbjct: 223 MQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG 282
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
+H +I + N ++++ +DMY+KCG ++ + +F VQ ++ +WN +ISG A H
Sbjct: 283 KQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKH 342
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
+ +F KM+ + P+ +TF LL+ C H GLVEEGR++F MR+ Y + P + H
Sbjct: 343 ARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVH 402
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL- 239
Y MVD+LGRAG + EAY LI S+ +P +W +LL++CR +K LEL EVA + L
Sbjct: 403 YSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELE 462
Query: 240 --MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
G++VLLSN+Y K+W+ R++++ V+K +GKSW+++ +H F G+ H
Sbjct: 463 PENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGH 522
Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
P + I L +L+ + + G+ P+ E L DV +KE L HSEKLAL +G++
Sbjct: 523 PRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPE 582
Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
+ +RI KNLRIC DCH ++K S RR IIVRD RFH F G CSCGD+W
Sbjct: 583 SSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 114/219 (52%), Gaps = 2/219 (0%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M ++ +VSWN+MIG + RN EAL F EM + + +FT +SV+ C
Sbjct: 122 MLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALEC 181
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
+H L ++ I+LN + AL+D+Y+KCG I+ A +VF+++Q W++M++G +
Sbjct: 182 KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQN 241
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
+A ++ + + ++ + T ++ ACS+ + EG++ + + +
Sbjct: 242 KNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQ-MHAVICKSGFGSNVFV 300
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
+ VD+ + G + E+Y +I S E ++ +W ++S
Sbjct: 301 ASSAVDMYAKCGSLRESY-IIFSEVQEKNLELWNTIISG 338
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 4/170 (2%)
Query: 51 CARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVW 110
CAR GA+ A H II +E + L LI+ YSKCG +++A++VFD + + W
Sbjct: 71 CARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSW 130
Query: 111 NAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS-HCGLVEEGRKYFDHMR 169
N MI + + ++A IF +M T +L+AC +C +E K +
Sbjct: 131 NTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALE--CKKLHCLS 188
Query: 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
+ I L A++DL + G I++A + SM + V W ++++
Sbjct: 189 VKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESM-QDKSSVTWSSMVAG 237
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 347 bits (890), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 168/415 (40%), Positives = 257/415 (61%), Gaps = 5/415 (1%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREML--SSKVEPDKFTFASVIYGCARLGALN 58
MP ++VVSW++MI + +N + EALR FREM+ + P+ T SV+ CA L AL
Sbjct: 243 MPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALE 302
Query: 59 HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
+H I+ + ++ + +AL+ MY +CGK+++ + VFD + DV WN++IS
Sbjct: 303 QGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYG 362
Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
+HG A IF +M P +TF+ +L ACSH GLVEEG++ F+ M + I+PQ+
Sbjct: 363 VHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQI 422
Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVN 235
EHY MVDLLGRA ++EA ++ M EP VW +LL +CR +EL E A +
Sbjct: 423 EHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFA 482
Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
+ G+YVLL+++Y + WD + V+++++ +G++K G+ W+E+ ++ F + D
Sbjct: 483 LEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDE 542
Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
+P + I L L + K +G++P T+ VL ++ EEKE + HSEKLALA+G++ T
Sbjct: 543 FNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINT 602
Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
S G IRI+KNLR+C DCH + K IS+ + + I+VRD RFHRF+ G+CSCGDYW
Sbjct: 603 SKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 111/234 (47%), Gaps = 20/234 (8%)
Query: 7 VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNL 66
+S N +I + + +A+R +LS + P + T+ +I C +L+ A VH
Sbjct: 47 ISNNQLIQSLCKEGKLKQAIR----VLSQESSPSQQTYELLILCCGHRSSLSDALRVHRH 102
Query: 67 IIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126
I++ + + L+ LI MYS G + A++VFD ++ + VWNA+ + + G +
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162
Query: 127 SAIFTKMEMFNVLPDSITFLGLLTAC--SHCGL--VEEGRKYFDHMRSRYSIQPQLEHYG 182
++ KM V D T+ +L AC S C + + +G++ H+ +R +
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHL-TRRGYSSHVYIMT 221
Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS----------ACRTFKRL 226
+VD+ R G ++ A + M + +VV W A+++ A RTF+ +
Sbjct: 222 TLVDMYARFGCVDYASYVFGGMPVR-NVVSWSAMIACYAKNGKAFEALRTFREM 274
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 108/224 (48%), Gaps = 12/224 (5%)
Query: 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGC-ARLGALNH--- 59
+ + WN++ +E L + +M VE D+FT+ V+ C A +NH
Sbjct: 141 RTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMK 200
Query: 60 AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
+H + + + + L+DMY++ G + A VF + +V W+AMI+ A
Sbjct: 201 GKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAK 260
Query: 120 HGLAADASAIFTKM--EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM--RSRYSIQ 175
+G A +A F +M E + P+S+T + +L AC+ +E+G+ ++ R SI
Sbjct: 261 NGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSIL 320
Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
P + A+V + GR G +E + M + DVV W +L+S+
Sbjct: 321 PVI---SALVTMYGRCGKLEVGQRVFDRM-HDRDVVSWNSLISS 360
>sp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protein At5g40410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2
SV=1
Length = 608
Score = 346 bits (888), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 181/411 (44%), Positives = 248/411 (60%), Gaps = 4/411 (0%)
Query: 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
K++VSWN+MI ++N ++ L +F EPD+ TF +V+ C +G + A +
Sbjct: 198 KNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGI 257
Query: 64 HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
H LI+ N ++ AL+D+YSK G+++ + VF + D W AM++ A HG
Sbjct: 258 HGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFG 317
Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
DA F M + + PD +TF LL ACSH GLVEEG+ YF+ M RY I P+L+HY
Sbjct: 318 RDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSC 377
Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM--- 240
MVDLLGR+G +++AYGLI M MEP VW ALL ACR +K +LG A + L
Sbjct: 378 MVDLLGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRD 437
Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
G +YV+LSN+Y W A +R +MK+KG+ ++ G S++E IH+F GD SHPE+
Sbjct: 438 GRNYVMLSNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHPES 497
Query: 301 QAIDKILGSLIQRTKSE-GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
+ I K L + ++ KSE G+ TE VL DV E+ KE + HSEK+A+A+G+L SP
Sbjct: 498 EKIQKKLKEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFGLLVVSPME 557
Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
I I KNLRIC DCH K IS + +R II+RD RFH F G CSC DYW
Sbjct: 558 PIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDGSCSCSDYW 608
Score = 92.0 bits (227), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 104/229 (45%), Gaps = 14/229 (6%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKV--EPDKFTFASVIYGCARLGALN 58
MP++D+VSWNS+I G+ + M+ S+V P++ TF S+I C G+
Sbjct: 92 MPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSKE 151
Query: 59 HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
+H L+++ + + A I+ Y K G + + ++F+ + ++ WN MI
Sbjct: 152 EGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHL 211
Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVE-----EGRKYFDHMRSRYS 173
+GLA A F PD TFL +L +C G+V G F
Sbjct: 212 QNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNKC 271
Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRT 222
I A++DL + G +E++ + +T PD + W A+L+A T
Sbjct: 272 ITT------ALLDLYSKLGRLEDSSTVFHEIT-SPDSMAWTAMLAAYAT 313
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 82/162 (50%), Gaps = 5/162 (3%)
Query: 82 LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNV--L 139
L+ Y + G A+++FD + D+ WN++ISG + G + ++M + V
Sbjct: 72 LVGCYLRLGHDVCAEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFR 131
Query: 140 PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199
P+ +TFL +++AC + G EEGR + ++ + +++ A ++ G+ G + +
Sbjct: 132 PNEVTFLSMISACVYGGSKEEGR-CIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCK 190
Query: 200 LITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241
L ++++ ++V W ++ E G +A N+SR +G
Sbjct: 191 LFEDLSIK-NLVSWNTMIVIHLQNGLAEKG-LAYFNMSRRVG 230
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 344 bits (882), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 174/418 (41%), Positives = 244/418 (58%), Gaps = 14/418 (3%)
Query: 3 DKDVVSWNSMIGGFVRNARFDEALRFFREMLSS--KVEPDKFTFASVIYGCARLGALN-- 58
++DVV+W MIGG+ ++ ++AL EM + P+ FT + + CA L AL
Sbjct: 437 ERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIG 496
Query: 59 ---HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115
HAY + N ++ + +S LIDMY+KCG I A+ VFD + + W ++++
Sbjct: 497 KQIHAYALRN----QQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMT 552
Query: 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175
G +HG +A IF +M D +T L +L ACSH G++++G +YF+ M++ + +
Sbjct: 553 GYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVS 612
Query: 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVN 235
P EHY +VDLLGRAG + A LI M MEP VVW A LS CR ++ELGE A
Sbjct: 613 PGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEK 672
Query: 236 ISRLMG---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKA 292
I+ L G Y LLSN+Y RW +R +M+ KGV+K G SW+E F
Sbjct: 673 ITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFV 732
Query: 293 GDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGI 352
GD++HP A+ I ++L +QR K G++P T L DV +EEK+ L+ HSEKLALAYGI
Sbjct: 733 GDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGI 792
Query: 353 LKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
L T G IRI+KNLR+C DCH+ +SR++ II+RD RFH F+ G CSC YW
Sbjct: 793 LTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 130/267 (48%), Gaps = 51/267 (19%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFF------------------------------- 29
M KDVVSWN+M+ G+ + RF++A+R F
Sbjct: 290 MSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEA 349
Query: 30 ----REMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIEL--------NFI 77
R+MLSS ++P++ T SV+ GCA +GAL H +H I+ I+L N +
Sbjct: 350 LGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMV 409
Query: 78 LSAALIDMYSKCGKIQMAKEVFDTV--QRNDVSVWNAMISGVAIHGLAADASAIFTKM-- 133
++ LIDMY+KC K+ A+ +FD++ + DV W MI G + HG A A + ++M
Sbjct: 410 IN-QLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFE 468
Query: 134 EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGRAG 192
E P++ T L AC+ + G++ + +R++ + P L ++D+ + G
Sbjct: 469 EDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVP-LFVSNCLIDMYAKCG 527
Query: 193 HIEEAYGLITSMTMEPDVVVWRALLSA 219
I +A + +M M + V W +L++
Sbjct: 528 SISDARLVFDNM-MAKNEVTWTSLMTG 553
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 106/226 (46%), Gaps = 3/226 (1%)
Query: 3 DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
D V WNS+I + N ++ L F M S PD +TF V C + ++
Sbjct: 89 DAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGES 148
Query: 63 VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
H L + N + AL+ MYS+C + A++VFD + DV WN++I A G
Sbjct: 149 AHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGK 208
Query: 123 AADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
A +F++M F PD+IT + +L C+ G G++ + IQ
Sbjct: 209 PKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVG- 267
Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLE 227
+VD+ + G ++EA + ++M+++ DVV W A+++ R E
Sbjct: 268 NCLVDMYAKCGMMDEANTVFSNMSVK-DVVSWNAMVAGYSQIGRFE 312
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 109/257 (42%), Gaps = 45/257 (17%)
Query: 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLGALNHAYWV 63
DVVSWNS+I + + + AL F M + PD T +V+ CA LG + +
Sbjct: 192 DVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQL 251
Query: 64 HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
H + ++ N + L+DMY+KCG + A VF + DV WNAM++G + G
Sbjct: 252 HCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRF 311
Query: 124 ADASAIFTKME-----------------------------------MFNVLPDSITFLGL 148
DA +F KM+ + P+ +T + +
Sbjct: 312 EDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISV 371
Query: 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG-------AMVDLLGRAGHIEEAYGLI 201
L+ C+ G + G++ + +Y I + +G ++D+ + ++ A +
Sbjct: 372 LSGCASVGALMHGKEIHCYA-IKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMF 430
Query: 202 TSMT-MEPDVVVWRALL 217
S++ E DVV W ++
Sbjct: 431 DSLSPKERDVVTWTVMI 447
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M K+ V+W S++ G+ + +EAL F EM + D T V+Y C+ G ++
Sbjct: 539 MMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQG 598
Query: 61 YWVHNLIIEKKIELNFILS------AALIDMYSKCGKIQMAKEVFDTVQRNDVS-VWNAM 113
N +++ F +S A L+D+ + G++ A + + + VW A
Sbjct: 599 MEYFN-----RMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAF 653
Query: 114 ISGVAIHG 121
+S IHG
Sbjct: 654 LSCCRIHG 661
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 342 bits (877), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 174/413 (42%), Positives = 240/413 (58%), Gaps = 3/413 (0%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
MP +D VSW +MI G+ ++ EALR F +M ++ +F+S + CA + AL
Sbjct: 369 MPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELG 428
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
+H +++ E + AL+ MY KCG I+ A ++F + D+ WN MI+G + H
Sbjct: 429 KQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRH 488
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
G A F M+ + PD T + +L+ACSH GLV++GR+YF M Y + P +H
Sbjct: 489 GFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQH 548
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
Y MVDLLGRAG +E+A+ L+ +M EPD +W LL A R EL E A I +
Sbjct: 549 YACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAME 608
Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
G YVLLSN+Y RW +R M+ KGV+K G SW+E+ H F GD H
Sbjct: 609 PENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFH 668
Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
PE I L L R K G++ T +VL DV EEEKE + +HSE+LA+AYGI++ S
Sbjct: 669 PEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSS 728
Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
G IR+ KNLR+C DCH+ IK ++R+ R+II+RD RFH F+ G CSCGDYW
Sbjct: 729 GRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 115/261 (44%), Gaps = 45/261 (17%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
MP+K+ VSWN+++ +V+N++ +EA F+ + +A V + C G +
Sbjct: 183 MPEKNDVSWNALLSAYVQNSKMEEACMLFK---------SRENWALVSWNCLLGGFVKKK 233
Query: 61 YWVHNLIIEKKIELNFILS-AALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
V + + ++S +I Y++ GKI A+++FD DV W AM+SG
Sbjct: 234 KIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQ 293
Query: 120 HGLAADASAIFTKM-------------------------EMFNVLP--DSITFLGLLTAC 152
+ + +A +F KM E+F+V+P + T+ ++T
Sbjct: 294 NRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGY 353
Query: 153 SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP---D 209
+ CG + E + FD M R + + AM+ ++GH EA L M E +
Sbjct: 354 AQCGKISEAKNLFDKMPKRDPVS-----WAAMIAGYSQSGHSFEALRLFVQMEREGGRLN 408
Query: 210 VVVWRALLSACRTFKRLELGE 230
+ + LS C LELG+
Sbjct: 409 RSSFSSALSTCADVVALELGK 429
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 124/261 (47%), Gaps = 38/261 (14%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M +DVVSWN++I G+ ++ + DEA + F E S V+ D FT+ +++ G + + A
Sbjct: 245 MNVRDVVSWNTIITGYAQSGKIDEARQLFDE---SPVQ-DVFTWTAMVSGYIQNRMVEEA 300
Query: 61 YWVHNLIIEK-KIELNFILSA--------------------------ALIDMYSKCGKIQ 93
+ + + E+ ++ N +L+ +I Y++CGKI
Sbjct: 301 RELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKIS 360
Query: 94 MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
AK +FD + + D W AMI+G + G + +A +F +ME + +F L+ C+
Sbjct: 361 EAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCA 420
Query: 154 HCGLVEEGRKYFDHM-RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
+E G++ + + Y + + A++ + + G IEEA L M + D+V
Sbjct: 421 DVVALELGKQLHGRLVKGGYETGCFVGN--ALLLMYCKCGSIEEANDLFKEMAGK-DIVS 477
Query: 213 WRALLSACRTFKRLELGEVAI 233
W +++ + R GEVA+
Sbjct: 478 WNTMIAG---YSRHGFGEVAL 495
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 115/272 (42%), Gaps = 62/272 (22%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
MP++D+VSWN MI G+VRN +A RE+ E D ++ +++ G A+ G ++ A
Sbjct: 121 MPERDLVSWNVMIKGYVRNRNLGKA----RELFEIMPERDVCSWNTMLSGYAQNGCVDDA 176
Query: 61 YWVHNLIIEKK-IELNFILSA--------------------------ALIDMYSKCGKIQ 93
V + + EK + N +LSA L+ + K KI
Sbjct: 177 RSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIV 236
Query: 94 MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153
A++ FD++ DV WN +I+G A G +A +F + + + D T+ +++
Sbjct: 237 EARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDE----SPVQDVFTWTAMVSGYI 292
Query: 154 HCGLVEEGRKYFDHMRSR------------------------YSIQP--QLEHYGAMVDL 187
+VEE R+ FD M R + + P + + M+
Sbjct: 293 QNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITG 352
Query: 188 LGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
+ G I EA L M + D V W A+++
Sbjct: 353 YAQCGKISEAKNLFDKMP-KRDPVSWAAMIAG 383
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 106/221 (47%), Gaps = 22/221 (9%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
MP VS+N MI G++RN F+ A + F EM E D ++ +I G R L A
Sbjct: 90 MPRWSSVSYNGMISGYLRNGEFELARKLFDEM----PERDLVSWNVMIKGYVRNRNLGKA 145
Query: 61 YWVHNLIIEKKI-ELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVA 118
+ ++ E+ + N +LS Y++ G + A+ VFD + ++NDVS WNA++S
Sbjct: 146 RELFEIMPERDVCSWNTMLSG-----YAQNGCVDDARSVFDRMPEKNDVS-WNALLSAYV 199
Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
+ +A +F E + + +++ LL + E R++FD M R +
Sbjct: 200 QNSKMEEACMLFKSRENWAL----VSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVS--- 252
Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
+ ++ ++G I+EA L ++ DV W A++S
Sbjct: 253 --WNTIITGYAQSGKIDEARQLFDESPVQ-DVFTWTAMVSG 290
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 342 bits (876), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 169/414 (40%), Positives = 257/414 (62%), Gaps = 4/414 (0%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
MP +++ +W+ MI G+ +N F++A+ F M V ++ SVI CA LGAL
Sbjct: 209 MPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFG 268
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
+ +++ + +N IL AL+DM+ +CG I+ A VF+ + D W+++I G+A+H
Sbjct: 269 ERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVH 328
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
G A A F++M +P +TF +L+ACSH GLVE+G + +++M+ + I+P+LEH
Sbjct: 329 GHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEH 388
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
YG +VD+LGRAG + EA I M ++P+ + ALL AC+ +K E+ E ++ +
Sbjct: 389 YGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVK 448
Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG-DRS 296
G YVLLSN+Y +WD E++R++MK+K V+K G S +E+ G I++F G D+
Sbjct: 449 PEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQK 508
Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
HPE I + ++ + + G+ T DV EEEKE +++ HSEKLA+AYG++KT
Sbjct: 509 HPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTK 568
Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
PGT IRI KNLR+C DCH+ K+IS + R +IVRDR RFH F G+CSC DYW
Sbjct: 569 PGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 110/249 (44%), Gaps = 35/249 (14%)
Query: 3 DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
+ ++ +N +I F A +A F+ +ML S++ PD TF +I + + +
Sbjct: 79 NPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQ 138
Query: 63 VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
H+ I+ + + + +L+ MY+ CG I A +F + DV W +M++G G+
Sbjct: 139 THSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGM 198
Query: 123 AADASAIFTKMEMFNVLPDSITFLG-------------------------------LLTA 151
+A +F +M N+ SI G ++++
Sbjct: 199 VENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISS 258
Query: 152 CSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDV 210
C+H G +E G + +++ ++S ++ L A+VD+ R G IE+A + + E D
Sbjct: 259 CAHLGALEFGERAYEYVVKSHMTVNLILG--TALVDMFWRCGDIEKAIHVFEGLP-ETDS 315
Query: 211 VVWRALLSA 219
+ W +++
Sbjct: 316 LSWSSIIKG 324
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 75/178 (42%), Gaps = 2/178 (1%)
Query: 95 AKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
A +F +Q ++ V+N +I + + A +T+M + PD+ITF L+ A S
Sbjct: 70 AYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSE 129
Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
V G + + R+ Q + ++V + G I A + M DVV W
Sbjct: 130 MECVLVGEQTHSQI-VRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFR-DVVSWT 187
Query: 215 ALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGV 272
++++ +E + + ++ N Y ++ A ++ E MK++GV
Sbjct: 188 SMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGV 245
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 341 bits (875), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 177/415 (42%), Positives = 252/415 (60%), Gaps = 6/415 (1%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
+ D+DVV+W +MI G+ ++ + EA+ FR M+ P+ +T A+++ + L +L+H
Sbjct: 373 LKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHG 432
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV--QRNDVSVWNAMISGVA 118
+H ++ + +S ALI MY+K G I A FD + +R+ VS W +MI +A
Sbjct: 433 KQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVS-WTSMIIALA 491
Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
HG A +A +F M M + PD IT++G+ +AC+H GLV +GR+YFD M+ I P L
Sbjct: 492 QHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTL 551
Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISR 238
HY MVDL GRAG ++EA I M +EPDVV W +LLSACR K ++LG+VA +
Sbjct: 552 SHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLL 611
Query: 239 L---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
L G Y L+N+Y +W+ A +R+ MK V+K QG SW+E+ +H F D
Sbjct: 612 LEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDG 671
Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
+HPE I + + K G++P T VL D+ EE KE L HHSEKLA+A+G++ T
Sbjct: 672 THPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLIST 731
Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
T +RI KNLR+C+DCH+ IK IS+L+ R IIVRD RFH F+ G CSC DYW
Sbjct: 732 PDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 121/284 (42%), Gaps = 71/284 (25%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
+P +D VSW +MI G+ ++ +A+R +M+ +EP +FT +V+ A +
Sbjct: 106 LPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETG 165
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA-------- 112
VH+ I++ + N +S +L++MY+KCG MAK VFD + D+S WNA
Sbjct: 166 KKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQV 225
Query: 113 -----------------------MISGVAIHGLAADASAIFTKMEMFNVL-PDSITFLGL 148
MISG G A IF+KM ++L PD T +
Sbjct: 226 GQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASV 285
Query: 149 LTAC-----------------------------------SHCGLVEEGRKYFDHMRSRYS 173
L+AC S CG VE R+ + R +
Sbjct: 286 LSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQ---RGT 342
Query: 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
++E + A++D + G + +A + S+ + DVV W A++
Sbjct: 343 KDLKIEGFTALLDGYIKLGDMNQAKNIFVSLK-DRDVVAWTAMI 385
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 118/292 (40%), Gaps = 76/292 (26%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREML-SSKVEPDKFTFASVIYGCARLGALNH 59
M ++D+V+WNSMI GF + AL F +ML S + PD+FT ASV+ CA L L
Sbjct: 238 MAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCI 297
Query: 60 AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQ-------------------------- 93
+H+ I+ +++ I+ ALI MYS+CG ++
Sbjct: 298 GKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGY 357
Query: 94 -------MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFL 146
AK +F +++ DV W AMI G HG +A +F M P+S T
Sbjct: 358 IKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLA 417
Query: 147 -----------------------------------GLLTACSHCGLVEEGRKYFDHMRSR 171
L+T + G + + FD +R
Sbjct: 418 AMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRC- 476
Query: 172 YSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRALLSAC 220
+ + +M+ L + GH EEA L +M ME PD + + + SAC
Sbjct: 477 ---ERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSAC 525
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 61/175 (34%), Gaps = 36/175 (20%)
Query: 75 NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134
N +LSA YSK G + E FD + + D W MI G G A + M
Sbjct: 84 NTVLSA-----YSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMV 138
Query: 135 MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-----MRSRYSIQPQL----------- 178
+ P T +L + + +E G+K +R S+ L
Sbjct: 139 KEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPM 198
Query: 179 --------------EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
+ AM+ L + G ++ A M E D+V W +++S
Sbjct: 199 MAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMA-ERDIVTWNSMISG 252
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 60 AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
A VH +I+ + + L L+++YSK G A+++FD + WN ++S +
Sbjct: 33 AQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSK 92
Query: 120 HGLAADASAIFTKMEMFNVLP--DSITFLGLLTACSHCG 156
G + + E F+ LP DS+++ ++ + G
Sbjct: 93 RG------DMDSTCEFFDQLPQRDSVSWTTMIVGYKNIG 125
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 341 bits (875), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 168/415 (40%), Positives = 261/415 (62%), Gaps = 5/415 (1%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M KD+V+WN+ + V+ AL +F +M + V+ D FT S++ C +LG+L
Sbjct: 170 MQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIG 229
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
+++ +++I+ N I+ A +DM+ KCG + A+ +F+ +++ +V W+ MI G A++
Sbjct: 230 EEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMN 289
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM--RSRYSIQPQL 178
G + +A +FT M+ + P+ +TFLG+L+ACSH GLV EG++YF M + +++P+
Sbjct: 290 GDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRK 349
Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVN 235
EHY MVDLLGR+G +EEAY I M +EPD +W ALL AC + + LG+ +V
Sbjct: 350 EHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVE 409
Query: 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDR 295
+ +G +VLLSN+Y +WD + VR M+K G +K S +E G IH F GD+
Sbjct: 410 TAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDK 469
Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
SHP+++AI + L ++++ + G++P T V DV EEKE +L HHSEKLA+A+G++K
Sbjct: 470 SHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKG 529
Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
PG IR+ KNLR C DCH++ K +S L II+RD+ RFH F G+CSC ++W
Sbjct: 530 RPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584
Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 108/209 (51%), Gaps = 2/209 (0%)
Query: 9 WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
WN++ G+VRN E+L +++M V PD+FT+ V+ ++LG + + +H ++
Sbjct: 77 WNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVV 136
Query: 69 EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
+ I++ L+ MY K G++ A+ +F+++Q D+ WNA ++ G +A A
Sbjct: 137 KYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALE 196
Query: 129 IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLL 188
F KM V DS T + +L+AC G +E G + +D R + I + A +D+
Sbjct: 197 YFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRAR-KEEIDCNIIVENARLDMH 255
Query: 189 GRAGHIEEAYGLITSMTMEPDVVVWRALL 217
+ G+ E A L M + +VV W ++
Sbjct: 256 LKCGNTEAARVLFEEMK-QRNVVSWSTMI 283
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 20/167 (11%)
Query: 63 VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
+H +++ L L++ G + A++VFD + + + +WN + G + L
Sbjct: 30 IHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQL 89
Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182
++ ++ KM V PD T+ ++ A S G G +++ + YG
Sbjct: 90 PFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCG----------FALHAHVVKYG 139
Query: 183 ---------AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSAC 220
+V + + G + A L SM ++ D+V W A L+ C
Sbjct: 140 FGCLGIVATELVMMYMKFGELSSAEFLFESMQVK-DLVAWNAFLAVC 185
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 341 bits (874), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 171/415 (41%), Positives = 248/415 (59%), Gaps = 5/415 (1%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA-LNH 59
+ DKD+V+W++M+ G+ + + A++ F E+ ++P++FTF+S++ CA A +
Sbjct: 454 IDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQ 513
Query: 60 AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
H I+ +++ + +S+AL+ MY+K G I+ A+EVF + D+ WN+MISG A
Sbjct: 514 GKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQ 573
Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
HG A A +F +M+ V D +TF+G+ AC+H GLVEEG KYFD M I P E
Sbjct: 574 HGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKE 633
Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
H MVDL RAG +E+A +I +M +WR +L+ACR K+ ELG +A I +
Sbjct: 634 HNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAM 693
Query: 240 MGGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
D YVLLSNMY W VR++M ++ V+K G SW+E+ + F AGDRS
Sbjct: 694 KPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRS 753
Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
HP I L L R K G+ P T VL D+ +E KE L HSE+LA+A+G++ T
Sbjct: 754 HPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATP 813
Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEG-GLCSCGDYW 410
G+ + I KNLR+C DCH IK+I+++ R I+VRD RFH F G+CSCGD+W
Sbjct: 814 KGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 113/230 (49%), Gaps = 23/230 (10%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M +++VV+W ++I G+ RN+ DE L F M + +P+ FTFA+ + A G
Sbjct: 154 MKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRG 213
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
VH ++++ ++ +S +LI++Y KCG ++ A+ +FD + V WN+MISG A +
Sbjct: 214 LQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAAN 273
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACS-----------HCGLVEEGRKYFDHMR 169
GL +A +F M + V +F ++ C+ HC +V+ G + ++R
Sbjct: 274 GLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIR 333
Query: 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
+ ++ AM+D A L + +VV W A++S
Sbjct: 334 T--ALMVAYSKCTAMLD----------ALRLFKEIGCVGNVVSWTAMISG 371
Score = 99.4 bits (246), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 104/215 (48%), Gaps = 5/215 (2%)
Query: 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
+VVSW +MI GF++N +EA+ F EM V P++FT++ ++ + VH
Sbjct: 361 NVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSE----VH 416
Query: 65 NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAA 124
+++ E + + AL+D Y K GK++ A +VF + D+ W+AM++G A G
Sbjct: 417 AQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETE 476
Query: 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184
A +F ++ + P+ TF +L C+ K F + + L A+
Sbjct: 477 AAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSAL 536
Query: 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
+ + + G+IE A + E D+V W +++S
Sbjct: 537 LTMYAKKGNIESAEEVFKRQR-EKDLVSWNSMISG 570
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 100/218 (45%), Gaps = 2/218 (0%)
Query: 2 PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY 61
P +D S+ S++ GF R+ R EA R F + +E D F+SV+ A L
Sbjct: 54 PGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGR 113
Query: 62 WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
+H I+ + + +L+D Y K + ++VFD ++ +V W +ISG A +
Sbjct: 114 QLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNS 173
Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
+ + +F +M+ P+S TF L + G+ G + + + + +
Sbjct: 174 MNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQ-VHTVVVKNGLDKTIPVS 232
Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
++++L + G++ +A ++ T VV W +++S
Sbjct: 233 NSLINLYLKCGNVRKAR-ILFDKTEVKSVVTWNSMISG 269
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 339 bits (869), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 174/415 (41%), Positives = 250/415 (60%), Gaps = 5/415 (1%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M +++ SW ++I RN EAL F M V P T S++ CA L +L+H
Sbjct: 291 MKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHG 350
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
VH ++ + +++ +++ L+ MY KCG++ +K +FD D+ +WN++ISG A H
Sbjct: 351 KQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASH 410
Query: 121 GLAADASAIFTKMEMF-NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
GL +A +F +M + + P+ +TF+ L+ACS+ G+VEEG K ++ M S + ++P
Sbjct: 411 GLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITA 470
Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
HY MVD+LGRAG EA +I SMT+EPD VW +LL ACRT +L++ E ++ I
Sbjct: 471 HYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEI 530
Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQF-KAGDR 295
G Y+LLSNMY RW +R++MK + VRKS G SW E+ +H F + G
Sbjct: 531 EPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGIN 590
Query: 296 SHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKT 355
SHPE ++I KIL L + G+ P L DV EEEK +L +HSE+LA+AY +LK
Sbjct: 591 SHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKL 650
Query: 356 SPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
S G IR+ KNLR+C DCH+ IK+IS++ R II+RD RFH F G CSC DYW
Sbjct: 651 SEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 110/246 (44%), Gaps = 45/246 (18%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKV----------------------- 37
MPD++++SWN ++ G+++N DEA + F M V
Sbjct: 74 MPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLF 133
Query: 38 ----EPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQ 93
E +K ++ ++ G + G ++ A ++ +I +K + I ++I K G++
Sbjct: 134 WKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDK----DNIARTSMIHGLCKEGRVD 189
Query: 94 MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD--SITFLGLLTA 151
A+E+FD + V W M++G + DA I F+V+P+ +++ +L
Sbjct: 190 EAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKI------FDVMPEKTEVSWTSMLMG 243
Query: 152 CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211
G +E+ + F+ M ++P + AM+ LG+ G I +A + SM D
Sbjct: 244 YVQNGRIEDAEELFEVM----PVKPVIA-CNAMISGLGQKGEIAKARRVFDSMKERND-A 297
Query: 212 VWRALL 217
W+ ++
Sbjct: 298 SWQTVI 303
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 28/232 (12%)
Query: 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDK--FTFASVIYGCARLGALNHAY 61
K + SWNSM+ G+ N +A + F EM PD+ ++ ++ G + G ++ A
Sbjct: 46 KSISSWNSMVAGYFANLMPRDARKLFDEM------PDRNIISWNGLVSGYMKNGEIDEAR 99
Query: 62 WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF-DTVQRNDVSVWNAMISGVAIH 120
V +L+ E+ N + AL+ Y GK+ +A+ +F ++N VS W M+ G
Sbjct: 100 KVFDLMPER----NVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVS-WTVMLIGFLQD 154
Query: 121 GLAADASAIFTKMEMFNVLP--DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
G DA +++ ++P D+I ++ G V+E R+ FD M R I
Sbjct: 155 GRIDDAC------KLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVIT--- 205
Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGE 230
+ MV G+ +++A + M E V W ++L R+E E
Sbjct: 206 --WTTMVTGYGQNNRVDDARKIFDVMP-EKTEVSWTSMLMGYVQNGRIEDAE 254
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 113/235 (48%), Gaps = 17/235 (7%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M ++ V++W +M+ G+ +N R D+A + F M E + ++ S++ G + G + A
Sbjct: 198 MSERSVITWTTMVTGYGQNNRVDDARKIFDVM----PEKTEVSWTSMLMGYVQNGRIEDA 253
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV-QRNDVSVWNAMISGVAI 119
+ ++ K + I A+I + G+I A+ VFD++ +RND S W +I
Sbjct: 254 EELFEVMPVKPV----IACNAMISGLGQKGEIAKARRVFDSMKERNDAS-WQTVIKIHER 308
Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM-RSRYSIQPQL 178
+G +A +F M+ V P T + +L+ C+ + G++ + R ++ + +
Sbjct: 309 NGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYV 368
Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI 233
++ + + G + ++ LI D+++W +++S + LGE A+
Sbjct: 369 A--SVLMTMYIKCGELVKS-KLIFDRFPSKDIIMWNSIISG---YASHGLGEEAL 417
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 10/135 (7%)
Query: 83 IDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDS 142
I S+ GKI A+++FD+ +S WN+M++G + + DA +F +M N+
Sbjct: 24 ITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNI---- 79
Query: 143 ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
I++ GL++ G ++E RK FD M R + + A+V G ++ A L
Sbjct: 80 ISWNGLVSGYMKNGEIDEARKVFDLMPERNVVS-----WTALVKGYVHNGKVDVAESLFW 134
Query: 203 SMTMEPDVVVWRALL 217
M E + V W +L
Sbjct: 135 KMP-EKNKVSWTVML 148
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 339 bits (869), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 168/414 (40%), Positives = 255/414 (61%), Gaps = 4/414 (0%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
+ K SW+SM+ + E L FR M S + ++ ++ S + CA GALN
Sbjct: 193 LESKTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNL 252
Query: 60 AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
+H ++ ELN I+ +L+DMY KCG + A +F +++ + ++AMISG+A+
Sbjct: 253 GMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLAL 312
Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
HG A +F+KM + PD + ++ +L ACSH GLV+EGR+ F M ++P E
Sbjct: 313 HGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAE 372
Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
HYG +VDLLGRAG +EEA I S+ +E + V+WR LS CR + +ELG++A ++ +
Sbjct: 373 HYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKL 432
Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
S GDY+L+SN+Y + WD R + KG++++ G S +EL G H+F + DRS
Sbjct: 433 SSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRS 492
Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
HP+ + I K+L + + K EG+ P +L++V EEEK+ L HS+K+A+A+G+L T
Sbjct: 493 HPKCKEIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTP 552
Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
PG+ I+I++NLR+C DCH++ K IS + R I+VRDR RFH F+GG CSC DYW
Sbjct: 553 PGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606
Score = 101 bits (252), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 117/257 (45%), Gaps = 44/257 (17%)
Query: 3 DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
D +N+MI G+V F+EAL F+ EM+ EPD FT+ ++ C RL ++
Sbjct: 94 DPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQ 153
Query: 63 VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
+H + + +E + + +LI+MY +CG+++++ VF+ ++ + W++M+S A G+
Sbjct: 154 IHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGM 213
Query: 123 ------------------------------AADASAIFTKMEMFNVLPDSITFLGLLTAC 152
A+ A+ M + L +I+ L ++
Sbjct: 214 WSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQT 273
Query: 153 S------HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT- 205
S CG +++ F M R ++ Y AM+ L G E A + + M
Sbjct: 274 SLVDMYVKCGCLDKALHIFQKMEKRNNLT-----YSAMISGLALHGEGESALRMFSKMIK 328
Query: 206 --MEPDVVVWRALLSAC 220
+EPD VV+ ++L+AC
Sbjct: 329 EGLEPDHVVYVSVLNAC 345
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 338 bits (867), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 171/414 (41%), Positives = 254/414 (61%), Gaps = 4/414 (0%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M DK +VSWN++I G+++N D AL FR+M+ ++ + V C+ L +L
Sbjct: 557 MEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLG 616
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
H ++ +E + ++ +LIDMY+K G I + +VF+ ++ + WNAMI G IH
Sbjct: 617 REAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIH 676
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
GLA +A +F +M+ PD +TFLG+LTAC+H GL+ EG +Y D M+S + ++P L+H
Sbjct: 677 GLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKH 736
Query: 181 YGAMVDLLGRAGHIEEAYGLITS-MTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
Y ++D+LGRAG +++A ++ M+ E DV +W++LLS+CR + LE+GE + L
Sbjct: 737 YACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFEL 796
Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
+YVLLSN+Y L +W+ VR+ M + +RK G SW+EL + F G+R
Sbjct: 797 EPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERF 856
Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
+ I + L + G+ P T V D+SEEEK L HSEKLAL YG++KTS
Sbjct: 857 LDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTS 916
Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
GT IR+ KNLRIC DCH+ K+IS+++ R I+VRD RFH F+ G+CSCGDYW
Sbjct: 917 EGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 113/279 (40%), Gaps = 59/279 (21%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE----PDKFTFASVIYGCARLGA 56
MP++++VSWNSMI F N +E+ EM+ + PD T +V+ CAR
Sbjct: 248 MPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCARERE 307
Query: 57 LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
+ VH ++ +++ +L+ AL+DMYSKCG I A+ +F +V WN M+ G
Sbjct: 308 IGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGG 367
Query: 117 VAIHGLAADASAIFTKMEMF-----NVLPDSITFLGLLTACSH----------------- 154
+ G D F + +V D +T L + C H
Sbjct: 368 FSAEG---DTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQ 424
Query: 155 ------------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196
CG + ++ F +RS+ + + A++ G A +
Sbjct: 425 EFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSK-----TVNSWNALIG--GHAQSNDP 477
Query: 197 AYGLITSMTME-----PDVVVWRALLSACRTFKRLELGE 230
L + M+ PD +LLSAC K L LG+
Sbjct: 478 RLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGK 516
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 105/221 (47%), Gaps = 7/221 (3%)
Query: 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNHAYW 62
K++ WN++I + RN +DE L F EM+S+ + PD FT+ VI CA + +
Sbjct: 149 KNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLA 208
Query: 63 VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
VH L+++ + + + AL+ Y G + A ++FD + ++ WN+MI + +G
Sbjct: 209 VHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGF 268
Query: 123 AADASAIFTKMEMFN----VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
+ ++ + +M N +PD T + +L C+ + G K + + +L
Sbjct: 269 SEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLG-KGVHGWAVKLRLDKEL 327
Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
A++D+ + G I A +I M +VV W ++
Sbjct: 328 VLNNALMDMYSKCGCITNAQ-MIFKMNNNKNVVSWNTMVGG 367
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 105/218 (48%), Gaps = 10/218 (4%)
Query: 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
K V SWN++IGG ++ +L +M S + PD FT S++ C++L +L V
Sbjct: 459 KTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEV 518
Query: 64 HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
H II +E + + +++ +Y CG++ + +FD ++ + WN +I+G +G
Sbjct: 519 HGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFP 578
Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG- 182
A +F +M ++ + I+ + + ACS + GR+ Y+++ LE
Sbjct: 579 DRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGRE-----AHAYALKHLLEDDAF 633
Query: 183 ---AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
+++D+ + G I ++ + + E W A++
Sbjct: 634 IACSLIDMYAKNGSITQSSKVFNGLK-EKSTASWNAMI 670
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 107/222 (48%), Gaps = 10/222 (4%)
Query: 3 DKDVVSWNSMIGGFVRNARFDEALRFFREMLSS--KVEPDKFTFASVIYGCARLGALNHA 60
+K+VVSWN+M+GGF R+ML+ V+ D+ T + + C L
Sbjct: 355 NKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSL 414
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
+H ++++ N +++ A + Y+KCG + A+ VF ++ V+ WNA+I G A
Sbjct: 415 KELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQS 474
Query: 121 G---LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
L+ DA +M++ +LPDS T LL+ACS + G++ + R ++
Sbjct: 475 NDPRLSLDAH---LQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFI-IRNWLERD 530
Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
L Y +++ L G + L +M + +V W +++
Sbjct: 531 LFVYLSVLSLYIHCGELCTVQALFDAME-DKSLVSWNTVITG 571
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 90/200 (45%), Gaps = 10/200 (5%)
Query: 77 ILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKM-EM 135
+L +I MY+ CG ++ VFD ++ ++ WNA+IS + + L + F +M
Sbjct: 121 VLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMIST 180
Query: 136 FNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYGAMVDLLGRAGHI 194
++LPD T+ ++ AC+ G+ + G H + + + + A+V G G +
Sbjct: 181 TDLLPDHFTYPCVIKACA--GMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFV 238
Query: 195 EEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM--GGDYVLLSNMYC 252
+A L M E ++V W +++ R F E + + + +M GD + ++
Sbjct: 239 TDALQLFDIMP-ERNLVSWNSMI---RVFSDNGFSEESFLLLGEMMEENGDGAFMPDVAT 294
Query: 253 YLKRWDTAENVREIMKKKGV 272
+ REI KGV
Sbjct: 295 LVTVLPVCAREREIGLGKGV 314
>sp|Q9LXY5|PP284_ARATH Pentatricopeptide repeat-containing protein At3g56550
OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1
Length = 581
Score = 338 bits (867), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 168/417 (40%), Positives = 253/417 (60%), Gaps = 10/417 (2%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
MP +D+VSWN MI F ++AL ++ M + V D +T +++ CA + ALN
Sbjct: 168 MPVRDLVSWNVMICCFSHVGLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMG 227
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
+H + + + E +S ALIDMY+KCG ++ A VF+ +++ DV WN+MI G +H
Sbjct: 228 VMLHRIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVH 287
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
G +A + F KM V P++ITFLGLL CSH GLV+EG ++F+ M S++ + P ++H
Sbjct: 288 GHGVEAISFFRKMVASGVRPNAITFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKH 347
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
YG MVDL GRAG +E + +I + + D V+WR LL +C+ + LELGEVA +V +
Sbjct: 348 YGCMVDLYGRAGQLENSLEMIYASSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLE 407
Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
GDYVL++++Y ++R++++ ++ G SW+E+ +H+F D+ H
Sbjct: 408 AFNAGDYVLMTSIYSAANDAQAFASMRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMH 467
Query: 298 PEAQAIDKILGSLIQRTKSEGFLPA----TELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
PE+ I LG +I R G+ P T L D + + HSEKLA+AYG++
Sbjct: 468 PESAVIYSELGEVINRAILAGYKPEDSNRTAPTLSDRCLGSADTS---HSEKLAIAYGLM 524
Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
+T+ GT +RI+KNLR+C DCHS+ K +S+ R IIVRDR+RFH F G+CSC DYW
Sbjct: 525 RTTAGTTLRITKNLRVCRDCHSFTKYVSKAFNREIIVRDRVRFHHFADGICSCNDYW 581
Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 11/220 (5%)
Query: 3 DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVE-PDKFTFASVIYGCARLGALNHAY 61
D WN +I GF ++ ++ F+ ML S V PD FTF + C R+ ++
Sbjct: 68 DPSTSDWNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCL 127
Query: 62 WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHG 121
+H +I + I++ +L+ YS G +++A +VFD + D+ WN MI + G
Sbjct: 128 EIHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVG 187
Query: 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH- 180
L A +++ +M V DS T + LL++C+H + G M R + + E
Sbjct: 188 LHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGV-----MLHRIACDIRCESC 242
Query: 181 ---YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
A++D+ + G +E A G+ M + DV+ W +++
Sbjct: 243 VFVSNALIDMYAKCGSLENAIGVFNGMR-KRDVLTWNSMI 281
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis
thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 338 bits (866), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 166/410 (40%), Positives = 248/410 (60%), Gaps = 5/410 (1%)
Query: 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVH 64
D ++WN+++ GF ++ +EALR F M ++ + FTF S + + + VH
Sbjct: 656 DNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVH 715
Query: 65 NLIIEKKIELNFILSAALIDMYSKCGKIQMA-KEVFDTVQRNDVSVWNAMISGVAIHGLA 123
+I + + + ALI MY+KCG I A K+ + +N+VS WNA+I+ + HG
Sbjct: 716 AVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS-WNAIINAYSKHGFG 774
Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
++A F +M NV P+ +T +G+L+ACSH GLV++G YF+ M S Y + P+ EHY
Sbjct: 775 SEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVC 834
Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD 243
+VD+L RAG + A I M ++PD +VWR LLSAC K +E+GE A ++ L D
Sbjct: 835 VVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPED 894
Query: 244 ---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
YVLLSN+Y K+WD + R+ MK+KGV+K G+SW+E+ IH F GD++HP A
Sbjct: 895 SATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLA 954
Query: 301 QAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTE 360
I + L +R G++ +L ++ E+K+ ++ HSEKLA+++G+L
Sbjct: 955 DEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVP 1014
Query: 361 IRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
I + KNLR+C+DCH+WIK +S++ R IIVRD RFH FEGG CSC DYW
Sbjct: 1015 INVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 4/217 (1%)
Query: 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
++VV WN M+ + + R FR+M ++ P+++T+ S++ C RLG L +
Sbjct: 453 ENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQI 512
Query: 64 HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
H+ II+ +LN + + LIDMY+K GK+ A ++ DV W MI+G +
Sbjct: 513 HSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFD 572
Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS-IQPQLEHYG 182
A F +M + D + ++AC+ ++EG++ H ++ S L
Sbjct: 573 DKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI--HAQACVSGFSSDLPFQN 630
Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
A+V L R G IEE+Y L T D + W AL+S
Sbjct: 631 ALVTLYSRCGKIEESY-LAFEQTEAGDNIAWNALVSG 666
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 104/216 (48%), Gaps = 2/216 (0%)
Query: 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
KDVVSW +MI G+ + D+AL FR+ML + D+ + + CA L AL +
Sbjct: 554 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI 613
Query: 64 HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
H + AL+ +YS+CGKI+ + F+ + D WNA++SG G
Sbjct: 614 HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNN 673
Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
+A +F +M + ++ TF + A S +++G++ + ++ + E A
Sbjct: 674 EEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQ-VHAVITKTGYDSETEVCNA 732
Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
++ + + G I +A ++ + + V W A+++A
Sbjct: 733 LISMYAKCGSISDAEKQFLEVSTKNE-VSWNAIINA 767
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 118/239 (49%), Gaps = 14/239 (5%)
Query: 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
KD SW +MI G +N EA+R F +M + P + F+SV+ C ++ +L +
Sbjct: 251 KDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQL 310
Query: 64 HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
H L+++ + + AL+ +Y G + A+ +F + + D +N +I+G++ G
Sbjct: 311 HGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYG 370
Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHYG 182
A +F +M + + PDS T L+ ACS G + G++ + + ++ ++E G
Sbjct: 371 EKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIE--G 428
Query: 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA----------CRTFKRLELGEV 231
A+++L + IE A +E +VV+W +L A R F+++++ E+
Sbjct: 429 ALLNLYAKCADIETALDYFLETEVE-NVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEI 486
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 116/256 (45%), Gaps = 38/256 (14%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG--ALN 58
MP++ + +WN MI E F M+S V P++ TF+ V+ C R G A +
Sbjct: 146 MPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC-RGGSVAFD 204
Query: 59 HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
+H I+ + + + ++ LID+YS+ G + +A+ VFD ++ D S W AMISG++
Sbjct: 205 VVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLS 264
Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK--------------- 163
+ A+A +F M + ++P F +L+AC +E G +
Sbjct: 265 KNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTY 324
Query: 164 --------YF--------DHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM--- 204
YF +H+ S S Q Y +++ L + G+ E+A L M
Sbjct: 325 VCNALVSLYFHLGNLISAEHIFSNMS-QRDAVTYNTLINGLSQCGYGEKAMELFKRMHLD 383
Query: 205 TMEPDVVVWRALLSAC 220
+EPD +L+ AC
Sbjct: 384 GLEPDSNTLASLVVAC 399
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 106/221 (47%), Gaps = 6/221 (2%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M +D V++N++I G + ++A+ F+ M +EPD T AS++ C+ G L
Sbjct: 349 MSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRG 408
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
+H + N + AL+++Y+KC I+ A + F + +V +WN M+ +
Sbjct: 409 QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLL 468
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
++ IF +M++ ++P+ T+ +L C G +E G + + QL
Sbjct: 469 DDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQI---IKTNFQLNA 525
Query: 181 Y--GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
Y ++D+ + G ++ A+ ++ + DVV W +++
Sbjct: 526 YVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAG 565
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 96/234 (41%), Gaps = 45/234 (19%)
Query: 37 VEPDKFTFASVIYGCARL-GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMA 95
+ P+ T ++ GC + G+L+ +H+ I++ ++ N LS L D Y G + A
Sbjct: 80 IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGA 139
Query: 96 KEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC--- 152
+VFD + + WN MI +A L + +F +M NV P+ TF G+L AC
Sbjct: 140 FKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGG 199
Query: 153 ---------------------------------SHCGLVEEGRKYFDHMRSRYSIQPQLE 179
S G V+ R+ FD +R +
Sbjct: 200 SVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK-----DHS 254
Query: 180 HYGAMVDLLGRAGHIEEAYGLITSM---TMEPDVVVWRALLSACRTFKRLELGE 230
+ AM+ L + EA L M + P + ++LSAC+ + LE+GE
Sbjct: 255 SWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGE 308
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY-W 62
K+ VSWN++I + ++ EAL F +M+ S V P+ T V+ C+ +G ++ +
Sbjct: 756 KNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAY 815
Query: 63 VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAIH 120
++ E + ++DM ++ G + AKE + + D VW ++S +H
Sbjct: 816 FESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVH 874
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 338 bits (866), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 166/413 (40%), Positives = 249/413 (60%), Gaps = 4/413 (0%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
+ ++ VSWN++I G R + ++AL F+ ML P F++AS+ C+ G L
Sbjct: 222 LESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQG 281
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
WVH +I+ +L L+DMY+K G I A+++FD + + DV WN++++ A H
Sbjct: 282 KWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQH 341
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
G +A F +M + P+ I+FL +LTACSH GL++EG Y++ M+ + I P+ H
Sbjct: 342 GFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMK-KDGIVPEAWH 400
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
Y +VDLLGRAG + A I M +EP +W+ALL+ACR K ELG A ++ L
Sbjct: 401 YVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELD 460
Query: 241 G---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
G +V+L N+Y RW+ A VR+ MK+ GV+K SW+E+ IH F A D H
Sbjct: 461 PDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERH 520
Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSP 357
P+ + I + ++ + K G++P T V++ V ++E+E NL +HSEK+ALA+ +L T P
Sbjct: 521 PQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPP 580
Query: 358 GTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
G+ I I KN+R+C DCH+ IK+ S+++ R IIVRD RFH F+ G CSC DYW
Sbjct: 581 GSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 118/223 (52%), Gaps = 10/223 (4%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA--RLGALN 58
MP +D V+W ++I G+ ++ R +AL FF +ML P++FT +SVI A R G
Sbjct: 121 MPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCG 180
Query: 59 HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGV 117
H +H ++ + N + +AL+D+Y++ G + A+ VFD ++ RNDVS WNA+I+G
Sbjct: 181 HQ--LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS-WNALIAGH 237
Query: 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
A A +F M P ++ L ACS G +E+G+ +M S +
Sbjct: 238 ARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIK--SGEKL 295
Query: 178 LEHYG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
+ G ++D+ ++G I +A + + DVV W +LL+A
Sbjct: 296 VAFAGNTLLDMYAKSGSIHDARKIFDRLAKR-DVVSWNSLLTA 337
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 96/211 (45%), Gaps = 20/211 (9%)
Query: 23 DEALRF----------FREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKI 72
DE+L+F ++ S + D+ + +++ C L VH I++
Sbjct: 32 DESLKFPSNDLLLRTSSNDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIF 91
Query: 73 ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTK 132
+ ++ L++MY+KCG ++ A++VF+ + + D W +ISG + H DA F +
Sbjct: 92 RHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQ 151
Query: 133 MEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE---HYG-AMVDLL 188
M F P+ T ++ A + E R H + ++ + H G A++DL
Sbjct: 152 MLRFGYSPNEFTLSSVIKAAA-----AERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLY 206
Query: 189 GRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
R G +++A + ++ D V W AL++
Sbjct: 207 TRYGLMDDAQLVFDALESRND-VSWNALIAG 236
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 336 bits (861), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 169/414 (40%), Positives = 248/414 (59%), Gaps = 4/414 (0%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M +K+++SW MI G N +E L+ F M EP + F+ I CA LGA +
Sbjct: 377 MKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNG 436
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
H +++ + + ALI MY+KCG ++ A++VF T+ D WNA+I+ + H
Sbjct: 437 QQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQH 496
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
G A+A ++ +M + PD IT L +LTACSH GLV++GRKYFD M + Y I P +H
Sbjct: 497 GHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADH 556
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
Y ++DLL R+G +A +I S+ +P +W ALLS CR +ELG +A + L+
Sbjct: 557 YARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLI 616
Query: 241 ---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
G Y+LLSNM+ +W+ VR++M+ +GV+K SW+E+ +H F D SH
Sbjct: 617 PEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSH 676
Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDV-SEEEKEGNLYHHSEKLALAYGILKTS 356
PEA+A+ L L + + G++P T VL DV S+ KE L HSEK+A+A+G++K
Sbjct: 677 PEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLP 736
Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
PGT IRI KNLR C DCH++ + +S +++R II+RDR RFH F G CSCG++W
Sbjct: 737 PGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 114/245 (46%), Gaps = 34/245 (13%)
Query: 6 VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHN 65
+V++N+MI G+V + EAL R M+SS +E D+FT+ SVI CA G L VH
Sbjct: 251 LVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHA 310
Query: 66 LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
++ ++ + +F +L+ +Y KCGK A+ +F+ + D+ WNA++SG G +
Sbjct: 311 YVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGE 369
Query: 126 ASAIFTKMEMFNVL-------------------------------PDSITFLGLLTACSH 154
A IF +M+ N+L P F G + +C+
Sbjct: 370 AKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAV 429
Query: 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
G G++Y + + L A++ + + G +EEA + +M D V W
Sbjct: 430 LGAYCNGQQYHAQLL-KIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPC-LDSVSWN 487
Query: 215 ALLSA 219
AL++A
Sbjct: 488 ALIAA 492
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 108/254 (42%), Gaps = 42/254 (16%)
Query: 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
+D V +N+MI GF N A+ F +M +PD FTFASV+ G A L A + V
Sbjct: 111 RDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLA-LVADDEKQCV 169
Query: 64 HNLIIEKKIELNFI--LSAALIDMYSKCGK----IQMAKEVFDTVQRNDVSVW------- 110
K +I +S AL+ +YSKC + A++VFD + D W
Sbjct: 170 QFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGY 229
Query: 111 -------------------------NAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145
NAMISG G +A + +M + D T+
Sbjct: 230 VKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTY 289
Query: 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205
++ AC+ GL++ G++ ++ R ++ ++V L + G +EA + M
Sbjct: 290 PSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDN--SLVSLYYKCGKFDEARAIFEKMP 347
Query: 206 MEPDVVVWRALLSA 219
+ D+V W ALLS
Sbjct: 348 AK-DLVSWNALLSG 360
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 53 RLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA 112
R +L A VH II + + LID+Y K ++ A+++FD + D
Sbjct: 26 RRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTT 85
Query: 113 MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154
M+SG G A +F K + + D++ + ++T SH
Sbjct: 86 MVSGYCASGDITLARGVFEKAPV--CMRDTVMYNAMITGFSH 125
Score = 39.3 bits (90), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 73 ELNFILSAALIDMYSKCGKIQMAKEVFD--TVQRNDVSVWNAMISGVAIHGLAADASAIF 130
E + I ++ Y G I +A+ VF+ V D ++NAMI+G + + A +F
Sbjct: 77 EPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLF 136
Query: 131 TKMEMFNVLPDSITFLGLLTA 151
KM+ PD+ TF +L
Sbjct: 137 CKMKHEGFKPDNFTFASVLAG 157
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 335 bits (858), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 166/414 (40%), Positives = 253/414 (61%), Gaps = 4/414 (0%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLS-SKVEPDKFTFASVIYGCARLGALNH 59
+P+ DV+SWN++I G+ +N EA+ + M ++ ++ T+ SV+ C++ GAL
Sbjct: 410 LPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQ 469
Query: 60 AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
+H +++ + L+ + +L DMY KCG+++ A +F + R + WN +I+
Sbjct: 470 GMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGF 529
Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
HG A +F +M V PD ITF+ LL+ACSH GLV+EG+ F+ M++ Y I P L+
Sbjct: 530 HGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLK 589
Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNI 236
HYG MVD+ GRAG +E A I SM+++PD +W ALLSACR ++LG++A + +
Sbjct: 590 HYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEV 649
Query: 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
G +VLLSNMY +W+ + +R I KG+RK+ G S +E+ + F G+++
Sbjct: 650 EPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQT 709
Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
HP + + + L +L + K G++P VL DV ++EKE L HSE+LA+A+ ++ T
Sbjct: 710 HPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATP 769
Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
T IRI KNLR+C DCHS K IS++ R IIVRD RFH F+ G+CSCGDYW
Sbjct: 770 AKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 113/222 (50%), Gaps = 5/222 (2%)
Query: 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
+D++SWNS+I + N + A+ F+EM S+++PD T S+ ++LG + V
Sbjct: 311 RDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSV 370
Query: 64 HNLIIEKKIEL-NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
+ K L + + A++ MY+K G + A+ VF+ + DV WN +ISG A +G
Sbjct: 371 QGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGF 430
Query: 123 AADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181
A++A ++ M E + + T++ +L ACS G + +G K + + + +
Sbjct: 431 ASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLL-KNGLYLDVFVV 489
Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTF 223
++ D+ G+ G +E+A L + + V W L+ AC F
Sbjct: 490 TSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLI-ACHGF 529
Score = 88.6 bits (218), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 10/220 (4%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFRE-MLSSKVEPDKFTFASVIYGCARLGALNH 59
+ ++DV +WN MI G+ R E +R F MLSS + PD TF SV+ C + N
Sbjct: 112 IQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNK 171
Query: 60 AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
+H L ++ + ++A+LI +YS+ + A+ +FD + D+ WNAMISG
Sbjct: 172 ---IHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQ 228
Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
G A +A + + DS+T + LL+AC+ G G + ++ ++ +L
Sbjct: 229 SGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSY-SIKHGLESELF 283
Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
++DL G + + + M + D++ W +++ A
Sbjct: 284 VSNKLIDLYAEFGRLRDCQKVFDRMYVR-DLISWNSIIKA 322
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 104/220 (47%), Gaps = 7/220 (3%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEP-DKFTFASVIYGCARLGALNH 59
MP +D+ SWN+MI G+ ++ EAL LS+ + D T S++ C G N
Sbjct: 211 MPVRDMGSWNAMISGYCQSGNAKEAL-----TLSNGLRAMDSVTVVSLLSACTEAGDFNR 265
Query: 60 AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
+H+ I+ +E +S LID+Y++ G+++ ++VFD + D+ WN++I +
Sbjct: 266 GVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYEL 325
Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
+ A ++F +M + + PD +T + L + S G + R + +
Sbjct: 326 NEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDIT 385
Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
A+V + + G ++ A + + DV+ W ++S
Sbjct: 386 IGNAVVVMYAKLGLVDSARAVFNWLP-NTDVISWNTIISG 424
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 36/186 (19%)
Query: 66 LIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAAD 125
L++ K+I+ N +SA L+++Y G + +A+ FD +Q DV WN MISG +G A +
Sbjct: 77 LVVSKQIQ-NVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISG---YGRAGN 132
Query: 126 ASAIFTKMEMF----NVLPDSITFLGLLTACS--------HCGLVEEGRKY-------FD 166
+S + +F + PD TF +L AC HC ++ G +
Sbjct: 133 SSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLI 192
Query: 167 HMRSRYSI----------QP--QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
H+ SRY P + + AM+ ++G+ +EA L + V V
Sbjct: 193 HLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTV-V 251
Query: 215 ALLSAC 220
+LLSAC
Sbjct: 252 SLLSAC 257
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 334 bits (857), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 164/414 (39%), Positives = 250/414 (60%), Gaps = 4/414 (0%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNH 59
M KD++SWN++IGG+ +N +EAL F +L K PD+ T A V+ CA L A +
Sbjct: 458 MRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDK 517
Query: 60 AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
+H I+ + ++ +L+DMY+KCG + +A +FD + D+ W MI+G +
Sbjct: 518 GREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGM 577
Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
HG +A A+F +M + D I+F+ LL ACSH GLV+EG ++F+ MR I+P +E
Sbjct: 578 HGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVE 637
Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRL 239
HY +VD+L R G + +AY I +M + PD +W ALL CR ++L E + L
Sbjct: 638 HYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFEL 697
Query: 240 ---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
G YVL++N+Y ++W+ + +R+ + ++G+RK+ G SW+E+ G ++ F AGD S
Sbjct: 698 EPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSS 757
Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
+PE + I+ L + R EG+ P T+ L+D E EKE L HSEKLA+A GI+ +
Sbjct: 758 NPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSG 817
Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
G IR++KNLR+C DCH K +S+L RR I++RD RFH+F+ G CSC +W
Sbjct: 818 HGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 119/219 (54%), Gaps = 6/219 (2%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA--RLGALN 58
M ++DV+SWNS+I G+V N ++ L F +ML S +E D T SV GCA RL +L
Sbjct: 256 MTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG 315
Query: 59 HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
A VH++ ++ L+DMYSKCG + AK VF + V + +MI+G A
Sbjct: 316 RA--VHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYA 373
Query: 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL 178
GLA +A +F +ME + PD T +L C+ L++EG++ + ++ + +
Sbjct: 374 REGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEN-DLGFDI 432
Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
A++D+ + G ++EA + + M ++ D++ W ++
Sbjct: 433 FVSNALMDMYAKCGSMQEAELVFSEMRVK-DIISWNTII 470
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 115/221 (52%), Gaps = 5/221 (2%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M D+ VVS+ SMI G+ R EA++ F EM + PD +T +V+ CAR L+
Sbjct: 357 MSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEG 416
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
VH I E + + +S AL+DMY+KCG +Q A+ VF ++ D+ WN +I G + +
Sbjct: 417 KRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKN 476
Query: 121 GLAADASAIFT-KMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQL 178
A +A ++F +E PD T +L AC+ ++GR+ + MR+ Y +
Sbjct: 477 CYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHV 536
Query: 179 EHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
+ ++VD+ + G + A+ L + D+V W +++
Sbjct: 537 AN--SLVDMYAKCGALLLAHMLFDDIA-SKDLVSWTVMIAG 574
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 112/255 (43%), Gaps = 33/255 (12%)
Query: 9 WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68
WN ++ ++ F ++ F++M+SS VE D +TF+ V + L +++ +H I+
Sbjct: 163 WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 222
Query: 69 EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASA 128
+ + +L+ Y K ++ A++VFD + DV WN++I+G +GLA +
Sbjct: 223 KSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLS 282
Query: 129 IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR---------------KYFDHMRSRYS 173
+F +M + + D T + + C+ L+ GR ++ + + YS
Sbjct: 283 VFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYS 342
Query: 174 IQPQLE---------------HYGAMVDLLGRAGHIEEAYGLITSMTME---PDVVVWRA 215
L+ Y +M+ R G EA L M E PDV A
Sbjct: 343 KCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTA 402
Query: 216 LLSACRTFKRLELGE 230
+L+ C ++ L+ G+
Sbjct: 403 VLNCCARYRLLDEGK 417
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 97/218 (44%), Gaps = 6/218 (2%)
Query: 3 DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62
D+ V N+ + F + + A++ +S K + D T SV+ CA +L
Sbjct: 58 DRSVTDANTQLRRFCESGNLENAVKLL--CVSGKWDIDPRTLCSVLQLCADSKSLKDGKE 115
Query: 63 VHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122
V N I ++ L + L MY+ CG ++ A VFD V+ WN +++ +A G
Sbjct: 116 VDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGD 175
Query: 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLEHY 181
+ + +F KM V DS TF + + S V G + ++S + + + +
Sbjct: 176 FSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGN- 234
Query: 182 GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
++V + ++ A + MT E DV+ W ++++
Sbjct: 235 -SLVAFYLKNQRVDSARKVFDEMT-ERDVISWNSIING 270
>sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370
OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2
Length = 960
Score = 333 bits (855), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 171/411 (41%), Positives = 250/411 (60%), Gaps = 4/411 (0%)
Query: 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
KDVVSW SMI N EA+ FR M+ + + D ++ A L ALN +
Sbjct: 550 KDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREI 609
Query: 64 HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
H ++ K L ++ A++DMY+ CG +Q AK VFD ++R + + +MI+ +HG
Sbjct: 610 HCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCG 669
Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
A +F KM NV PD I+FL LL ACSH GL++EGR + M Y ++P EHY
Sbjct: 670 KAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVC 729
Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240
+VD+LGRA + EA+ + M EP VW ALL+ACR+ E+GE+A ++ +
Sbjct: 730 LVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKN 789
Query: 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEA 300
G+ VL+SN++ RW+ E VR MK G+ K G SW+E+ G +H+F A D+SHPE+
Sbjct: 790 PGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPES 849
Query: 301 QAIDKILGSLIQRTKSE-GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGT 359
+ I + L + ++ + E G++ T+ VL +V E EK L+ HSE++A+AYG+L+T
Sbjct: 850 KEIYEKLSEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRA 909
Query: 360 EIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
+RI+KNLR+C DCH++ K++S+L RR I++RD RFH FE GLCSCGD W
Sbjct: 910 CLRITKNLRVCRDCHTFCKLVSKLFRRDIVMRDANRFHHFESGLCSCGDSW 960
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 105/218 (48%), Gaps = 2/218 (0%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
MPD+ +WN+MIG +V N AL + M V +F +++ CA+L +
Sbjct: 142 MPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSG 201
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-RNDVSVWNAMISGVAI 119
+H+L+++ + AL+ MY+K + A+ +FD Q + D +WN+++S +
Sbjct: 202 SELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYST 261
Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
G + + +F +M M P+S T + LTAC + G++ + + +L
Sbjct: 262 SGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELY 321
Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217
A++ + R G + +A ++ M DVV W +L+
Sbjct: 322 VCNALIAMYTRCGKMPQAERILRQMN-NADVVTWNSLI 358
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 118/260 (45%), Gaps = 48/260 (18%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M DKD++SW ++I G+ +N EAL FR++ ++E D+ S++ + L ++
Sbjct: 447 MHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIV 506
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
+H I+ K + L+ ++ L+D+Y KC + A VF++++ DV W +MIS A++
Sbjct: 507 KEIHCHILRKGL-LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALN 565
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGL-------------------------------- 148
G ++A +F +M + DS+ L +
Sbjct: 566 GNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIA 625
Query: 149 -----LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203
+ AC CG ++ + FD + + +Q Y +M++ G G + A L
Sbjct: 626 VAVVDMYAC--CGDLQSAKAVFDRIERKGLLQ-----YTSMINAYGMHGCGKAAVELFDK 678
Query: 204 MTME---PDVVVWRALLSAC 220
M E PD + + ALL AC
Sbjct: 679 MRHENVSPDHISFLALLYAC 698
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 109/230 (47%), Gaps = 25/230 (10%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M + DVV+WNS+I G+V+N + EAL FF +M+++ + D+ + S+I RL L
Sbjct: 346 MNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAG 405
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
+H +I+ + N + LIDMYSKC F + D+ W +I+G A +
Sbjct: 406 MELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQN 465
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACS-----------HCGLVEEGRKYFDHMR 169
+A +F + + D + +L A S HC ++ +G D +
Sbjct: 466 DCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKG--LLDTV- 522
Query: 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
IQ +L VD+ G+ ++ A + S+ + DVV W +++S+
Sbjct: 523 ----IQNEL------VDVYGKCRNMGYATRVFESIKGK-DVVSWTSMISS 561
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 9/152 (5%)
Query: 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGC-----ARLGALNH 59
D V WNS++ + + + E L FREM + P+ +T S + C A+LG H
Sbjct: 248 DAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIH 307
Query: 60 AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119
A +++ + ALI MY++CGK+ A+ + + DV WN++I G
Sbjct: 308 A----SVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQ 363
Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
+ + +A F+ M D ++ ++ A
Sbjct: 364 NLMYKEALEFFSDMIAAGHKSDEVSMTSIIAA 395
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 16/188 (8%)
Query: 43 TFASVIYGCARLGALNHAYWVHNLIIE--KKIELNFILSAALIDMYSKCGKIQMAKEVFD 100
FA V+ C + A++ +H+ I + EL+F L+ L+ MY KCG + A++VFD
Sbjct: 82 AFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDF-LAGKLVFMYGKCGSLDDAEKVFD 140
Query: 101 TVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE 160
+ WN MI +G A A A++ M + V +F LL AC+ +
Sbjct: 141 EMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRS 200
Query: 161 GRKYFDHMRSRYSIQPQLEHY------GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWR 214
G + +S+ +L ++ A+V + + + A L + D V+W
Sbjct: 201 GSEL-------HSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWN 253
Query: 215 ALLSACRT 222
++LS+ T
Sbjct: 254 SILSSYST 261
>sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3
SV=1
Length = 822
Score = 328 bits (842), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 167/414 (40%), Positives = 254/414 (61%), Gaps = 4/414 (0%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
+ K+ VSWN++I G+ +A FRE L ++V + TF+S + CA L +++
Sbjct: 409 LSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLG 468
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
VH L I+ +S +LIDMY+KCG I+ A+ VF+ ++ DV+ WNA+ISG + H
Sbjct: 469 VQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTH 528
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
GL A I M+ + P+ +TFLG+L+ CS+ GL+++G++ F+ M + I+P LEH
Sbjct: 529 GLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEH 588
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLM 240
Y MV LLGR+G +++A LI + EP V++WRA+LSA E + I ++
Sbjct: 589 YTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKIN 648
Query: 241 GGD---YVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSH 297
D YVL+SNMY K+W ++R+ MK+ GV+K G SW+E G +H F G H
Sbjct: 649 PKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVGLSDH 708
Query: 298 PEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILK-TS 356
P+ + I+ +L L + G++P VL+D+ +EEK+ L+ HSE+LALAYG+++ S
Sbjct: 709 PDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPS 768
Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
I I KNLRIC DCHS +K+IS +++R +++RD RFH F G+CSCGD+W
Sbjct: 769 SRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDHW 822
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 4/223 (1%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
MP DVV W+ MI F +N +EA+ F M + V P++FT +S++ GCA
Sbjct: 308 MPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLG 367
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF-DTVQRNDVSVWNAMISGVAI 119
+H L+++ +L+ +S ALID+Y+KC K+ A ++F + +N+VS WN +I G
Sbjct: 368 EQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVS-WNTVIVGYEN 426
Query: 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179
G A ++F + V +TF L AC+ ++ G + + + + ++
Sbjct: 427 LGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHG-LAIKTNNAKKVA 485
Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRT 222
+++D+ + G I+ A + M DV W AL+S T
Sbjct: 486 VSNSLIDMYAKCGDIKFAQSVFNEME-TIDVASWNALISGYST 527
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 78/150 (52%)
Query: 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
KD+V W ++ +V N F+++L+ M + P+ +TF + + LGA + A V
Sbjct: 210 KDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGV 269
Query: 64 HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
H I++ L+ + L+ +Y++ G + A +VF+ + +NDV W+ MI+ +G
Sbjct: 270 HGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFC 329
Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACS 153
+A +F +M V+P+ T +L C+
Sbjct: 330 NEAVDLFIRMREAFVVPNEFTLSSILNGCA 359
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 102/219 (46%), Gaps = 8/219 (3%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
MP+++ VS+ ++ G+ R RE ++ P FT S + L
Sbjct: 110 MPERNNVSFVTLAQGYACQDPIGLYSRLHRE--GHELNPHVFT--SFLKLFVSLDKAEIC 165
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
W+H+ I++ + N + AALI+ YS CG + A+ VF+ + D+ VW ++S +
Sbjct: 166 PWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVEN 225
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH-MRSRYSIQPQLE 179
G D+ + + M M +P++ TF L A G + + +++ Y + P++
Sbjct: 226 GYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVG 285
Query: 180 HYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
++ L + G + +A+ + M + DVV W +++
Sbjct: 286 V--GLLQLYTQLGDMSDAFKVFNEMP-KNDVVPWSFMIA 321
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 328 bits (840), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 161/414 (38%), Positives = 241/414 (58%), Gaps = 4/414 (0%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
+P + VSW ++I G+V+ L+ F +M S + D+ TFA+V+ A +L
Sbjct: 412 LPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLG 471
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
+H II N + L+DMY+KCG I+ A +VF+ + + WNA+IS A +
Sbjct: 472 KQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADN 531
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
G A F KM + PDS++ LG+LTACSHCG VE+G +YF M Y I P+ +H
Sbjct: 532 GDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKH 591
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237
Y M+DLLGR G EA L+ M EPD ++W ++L+ACR K L E A + ++
Sbjct: 592 YACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSME 651
Query: 238 RLM-GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRS 296
+L YV +SN+Y W+ +V++ M+++G++K SW+E+ IH F + D++
Sbjct: 652 KLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQT 711
Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
HP I + + L + EG+ P T V+ DV E+ K +L +HSE+LA+A+ ++ T
Sbjct: 712 HPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTP 771
Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
G I + KNLR C DCH+ IK+IS++++R I VRD RFH F G+CSCGDYW
Sbjct: 772 EGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 107/219 (48%), Gaps = 2/219 (0%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
MP+ D VS+N +I + + +++ +L FFREM + F FA+++ A L +L
Sbjct: 311 MPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMG 370
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
+H + + + +L+DMY+KC + A+ +F ++ + W A+ISG
Sbjct: 371 RQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQK 430
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
GL +FTKM N+ D TF +L A + + G++ + +++
Sbjct: 431 GLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSG 490
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSA 219
G +VD+ + G I++A + M + + V W AL+SA
Sbjct: 491 SG-LVDMYAKCGSIKDAVQVFEEMP-DRNAVSWNALISA 527
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 4/155 (2%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREML--SSKVEPDKFTFASVIYGCARLGALN 58
MPD+ VV+W ++G + RN+ FDEA + FR+M SS PD TF +++ GC N
Sbjct: 105 MPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQN 164
Query: 59 HAYWVHNLIIEKKIELNFILSAA--LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISG 116
VH ++ + N L+ + L+ Y + ++ +A +F+ + D +N +I+G
Sbjct: 165 AVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITG 224
Query: 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151
GL ++ +F KM P TF G+L A
Sbjct: 225 YEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKA 259
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 102/219 (46%), Gaps = 4/219 (1%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
+P+KD V++N++I G+ ++ + E++ F +M S +P FTF+ V+ L
Sbjct: 210 IPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALG 269
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
+H L + + + ++D YSK ++ + +FD + D +N +IS +
Sbjct: 270 QQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQA 329
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
+ F +M+ + F +L+ ++ ++ GR+ H ++ + + H
Sbjct: 330 DQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQL--HCQALLATADSILH 387
Query: 181 YG-AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLS 218
G ++VD+ + EEA + S+ + V W AL+S
Sbjct: 388 VGNSLVDMYAKCEMFEEAELIFKSLP-QRTTVSWTALIS 425
Score = 37.4 bits (85), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 53 RLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA 112
R G ++ A V++ + K N + + +I + K G + A+++FD + V W
Sbjct: 60 RRGQVSAARKVYDEMPHK----NTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTI 115
Query: 113 MISGVAIHGLAADASAIFTKM--EMFNVLPDSITFLGLLTACS 153
++ A + +A +F +M LPD +TF LL C+
Sbjct: 116 LMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCN 158
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 328 bits (840), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 169/414 (40%), Positives = 242/414 (58%), Gaps = 4/414 (0%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M D+D +W MI + R EAL F +M V P + S++ CA L +L +
Sbjct: 291 MEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYG 350
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
VH ++ + + + +++ L+ MY KCG++ AK VFD D+ +WN++ISG A H
Sbjct: 351 RQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASH 410
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
GL +A IF +M +P+ +T + +LTACS+ G +EEG + F+ M S++ + P +EH
Sbjct: 411 GLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEH 470
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNI---S 237
Y VD+LGRAG +++A LI SMT++PD VW ALL AC+T RL+L EVA +
Sbjct: 471 YSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENE 530
Query: 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQF-KAGDRS 296
G YVLLS++ +W VR+ M+ V K G SW+E+ +H F + G ++
Sbjct: 531 PDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKN 590
Query: 297 HPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS 356
HPE I +L + G+ P VL DV EEEK +L HSE+LA+AYG+LK
Sbjct: 591 HPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLP 650
Query: 357 PGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
G IR+ KNLR+C DCH+ IK+IS++ R II+RD RFH F G CSC DYW
Sbjct: 651 EGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 110/233 (47%), Gaps = 13/233 (5%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M +++VV+W +MI G+ +N R D A + F E++ K E ++ S++ G G + A
Sbjct: 198 MRERNVVTWTTMITGYRQNNRVDVARKLF-EVMPEKTE---VSWTSMLLGYTLSGRIEDA 253
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
++ K + I A+I + + G+I A+ VFD ++ D + W MI
Sbjct: 254 EEFFEVMPMKPV----IACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERK 309
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
G +A +F +M+ V P + + +L+ C+ ++ GR+ H+ R +
Sbjct: 310 GFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHL-VRCQFDDDVYV 368
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI 233
++ + + G + +A L+ D+++W +++S + LGE A+
Sbjct: 369 ASVLMTMYVKCGELVKA-KLVFDRFSSKDIIMWNSIISG---YASHGLGEEAL 417
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 94/208 (45%), Gaps = 17/208 (8%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
M +++VVSWN ++ G+++N EA F M V ++ +++ G + G + A
Sbjct: 74 MSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNV----VSWTAMVKGYMQEGMVGEA 129
Query: 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIH 120
+ + E+ ++ LID G+I A++++D + DV MI G+
Sbjct: 130 ESLFWRMPERNEVSWTVMFGGLID----DGRIDKARKLYDMMPVKDVVASTNMIGGLCRE 185
Query: 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180
G +A IF +M NV +T+ ++T V+ RK F+ M + +
Sbjct: 186 GRVDEARLIFDEMRERNV----VTWTTMITGYRQNNRVDVARKLFEVMPEKTEVS----- 236
Query: 181 YGAMVDLLGRAGHIEEAYGLITSMTMEP 208
+ +M+ +G IE+A M M+P
Sbjct: 237 WTSMLLGYTLSGRIEDAEEFFEVMPMKP 264
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 103/269 (38%), Gaps = 49/269 (18%)
Query: 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWV 63
K + SWNS++ G+ N EA + F EM
Sbjct: 46 KAIGSWNSIVSGYFSNGLPKEARQLFDEM------------------------------- 74
Query: 64 HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123
E N + L+ Y K I A+ VF+ + +V W AM+ G G+
Sbjct: 75 --------SERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMV 126
Query: 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183
+A ++F +M N + ++ F GL+ G +++ RK +D M + +
Sbjct: 127 GEAESLFWRMPERNEVSWTVMFGGLIDD----GRIDKARKLYDMMPVKDVVAST-----N 177
Query: 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGD 243
M+ L R G ++EA LI E +VV W +++ R R+++ +
Sbjct: 178 MIGGLCREGRVDEAR-LIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVS 236
Query: 244 YVLLSNMYCYLKRWDTAENVREIMKKKGV 272
+ + Y R + AE E+M K V
Sbjct: 237 WTSMLLGYTLSGRIEDAEEFFEVMPMKPV 265
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 22/196 (11%)
Query: 83 IDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDS 142
I S+ GKI A++ FD++Q + WN+++SG +GL +A +F +M NV
Sbjct: 24 ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNV---- 79
Query: 143 ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLIT 202
+++ GL++ ++ E R F+ M R + + AMV + G + EA L
Sbjct: 80 VSWNGLVSGYIKNRMIVEARNVFELMPERNVVS-----WTAMVKGYMQEGMVGEAESLFW 134
Query: 203 SMTMEPDV---VVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNM---YCYLKR 256
M +V V++ L+ R K +L ++ V D V +NM C R
Sbjct: 135 RMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVK-------DVVASTNMIGGLCREGR 187
Query: 257 WDTAENVREIMKKKGV 272
D A + + M+++ V
Sbjct: 188 VDEARLIFDEMRERNV 203
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 327 bits (839), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 168/417 (40%), Positives = 254/417 (60%), Gaps = 7/417 (1%)
Query: 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHA 60
+P KD+V+W +M+ GF +NA+ EAL +F M S + D+ T A I CA+LGA +A
Sbjct: 241 LPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYA 300
Query: 61 YWVHNLIIEKKIELN--FILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118
+ + + ++ +ALIDMYSKCG ++ A VF ++ +V +++MI G+A
Sbjct: 301 DRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLA 360
Query: 119 IHGLAADASAIFTKM-EMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177
HG A +A +F M + P+++TF+G L ACSH GLV++GR+ FD M + +QP
Sbjct: 361 THGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPT 420
Query: 178 LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNIS 237
+HY MVDLLGR G ++EA LI +M++EP VW ALL ACR E+ E+A ++
Sbjct: 421 RDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLF 480
Query: 238 RL---MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWL-ELAGVIHQFKAG 293
L + G+Y+LLSN+Y W VR+++K+KG++K+ SW+ + G +H+F G
Sbjct: 481 ELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPG 540
Query: 294 DRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGIL 353
+ +HP + I L L++R G+ P V DVS+ K L H+EKLALA+ +L
Sbjct: 541 NLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLL 600
Query: 354 KTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGLCSCGDYW 410
T+ + I I KNLR+C DCH ++++ S + +VII+RD +RFH F G CSCGD+W
Sbjct: 601 TTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 114/255 (44%), Gaps = 41/255 (16%)
Query: 9 WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALN-----HA--- 60
W ++I G+ +FDEA+ + M ++ P FTF++++ C + LN HA
Sbjct: 117 WTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTF 176
Query: 61 -------YWVHNLIIEKKI----------------ELNFILSAALIDMYSKCGKIQMAKE 97
+V N +I+ + E + I LI Y++ G ++ A E
Sbjct: 177 RLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAE 236
Query: 98 VFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL 157
+F+++ D+ W AM++G A + +A F +ME + D +T G ++AC+ G
Sbjct: 237 LFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLG- 295
Query: 158 VEEGRKYFDH-----MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212
KY D +S YS + A++D+ + G++EEA + SM +V
Sbjct: 296 ---ASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMN-NKNVFT 351
Query: 213 WRALLSACRTFKRLE 227
+ +++ T R +
Sbjct: 352 YSSMILGLATHGRAQ 366
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 117/279 (41%), Gaps = 28/279 (10%)
Query: 57 LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQM---AKEVFDTVQRNDVSVWNAM 113
LN +H ++ K ++ + + LI +K G + M A+ V + VQ + +W A+
Sbjct: 62 LNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLG-VPMDPYARRVIEPVQFRNPFLWTAV 120
Query: 114 ISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173
I G AI G +A A++ M + P S TF LL AC + GR++ H ++ +
Sbjct: 121 IRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQF--HAQT-FR 177
Query: 174 IQPQLEHY--GAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV 231
++ Y M+D+ + I+ A + M E DV+ W L++A + R+ E
Sbjct: 178 LRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMP-ERDVISWTELIAA---YARVGNMEC 233
Query: 232 AIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREI---MKKKGVRKSQGKSWLELAGVIH 288
A L D V + M + + E M+K G+R + + +AG I
Sbjct: 234 AAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADE----VTVAGYI- 288
Query: 289 QFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVL 327
S K +Q + G+ P+ +V+
Sbjct: 289 -------SACAQLGASKYADRAVQIAQKSGYSPSDHVVI 320
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,605,529
Number of Sequences: 539616
Number of extensions: 5843370
Number of successful extensions: 23890
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 18650
Number of HSP's gapped (non-prelim): 2218
length of query: 410
length of database: 191,569,459
effective HSP length: 120
effective length of query: 290
effective length of database: 126,815,539
effective search space: 36776506310
effective search space used: 36776506310
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)