Query 040371
Match_columns 410
No_of_seqs 495 out of 3751
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 07:48:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 3.7E-97 8E-102 751.5 47.2 410 1-410 285-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 9.9E-91 2.1E-95 720.1 46.9 405 1-408 450-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 9.6E-54 2.1E-58 443.9 21.6 388 1-402 248-676 (857)
4 PLN03081 pentatricopeptide (PP 100.0 6.9E-52 1.5E-56 420.6 29.9 386 1-403 184-581 (697)
5 PLN03218 maturation of RBCL 1; 100.0 7.4E-49 1.6E-53 402.8 33.9 324 1-337 432-768 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 7.7E-49 1.7E-53 402.7 33.5 378 3-389 504-912 (1060)
7 PF14432 DYW_deaminase: DYW fa 100.0 3.4E-29 7.4E-34 191.4 8.5 106 277-400 2-116 (116)
8 PRK11788 tetratricopeptide rep 99.9 5.6E-19 1.2E-23 168.3 28.5 297 12-326 41-356 (389)
9 PRK11788 tetratricopeptide rep 99.8 2.4E-18 5.1E-23 164.0 28.8 269 5-277 68-354 (389)
10 TIGR02917 PEP_TPR_lipo putativ 99.8 6.9E-17 1.5E-21 169.7 31.0 289 6-310 601-897 (899)
11 TIGR02917 PEP_TPR_lipo putativ 99.8 7.1E-17 1.5E-21 169.7 29.7 262 5-271 532-800 (899)
12 PRK15174 Vi polysaccharide exp 99.7 1.9E-14 4.1E-19 144.9 30.4 259 7-270 77-347 (656)
13 PRK15174 Vi polysaccharide exp 99.6 1.9E-13 4.1E-18 137.6 28.1 256 10-270 46-313 (656)
14 TIGR00990 3a0801s09 mitochondr 99.6 5.1E-12 1.1E-16 127.3 32.6 255 9-270 130-496 (615)
15 TIGR00990 3a0801s09 mitochondr 99.6 3.2E-12 6.9E-17 128.8 30.0 246 20-270 308-571 (615)
16 KOG4626 O-linked N-acetylgluco 99.6 1.8E-13 3.9E-18 127.9 17.5 253 7-268 117-415 (966)
17 PF13429 TPR_15: Tetratricopep 99.5 3.1E-14 6.8E-19 129.1 9.0 253 11-268 13-275 (280)
18 PF13041 PPR_2: PPR repeat fam 99.5 3.4E-14 7.4E-19 92.2 6.6 50 4-53 1-50 (50)
19 PRK11447 cellulose synthase su 99.5 1.6E-11 3.5E-16 131.9 30.3 226 84-323 469-747 (1157)
20 KOG4318 Bicoid mRNA stability 99.5 4.8E-13 1E-17 129.6 16.6 270 27-334 11-282 (1088)
21 KOG4626 O-linked N-acetylgluco 99.5 2.3E-12 4.9E-17 120.6 18.4 256 6-269 218-484 (966)
22 PRK09782 bacteriophage N4 rece 99.5 1E-10 2.2E-15 121.2 30.0 258 5-272 476-742 (987)
23 PF13041 PPR_2: PPR repeat fam 99.4 2.8E-13 6E-18 87.9 6.5 50 105-154 1-50 (50)
24 TIGR00540 hemY_coli hemY prote 99.4 1E-10 2.2E-15 111.9 25.1 295 10-314 86-400 (409)
25 PRK11447 cellulose synthase su 99.4 4.6E-10 9.9E-15 120.8 32.6 257 9-274 464-745 (1157)
26 KOG4422 Uncharacterized conser 99.4 3E-10 6.5E-15 102.4 25.3 225 4-232 205-455 (625)
27 PRK10747 putative protoheme IX 99.4 5.8E-10 1.2E-14 106.1 27.7 274 19-309 97-386 (398)
28 PF13429 TPR_15: Tetratricopep 99.4 4.1E-13 8.9E-18 121.8 5.8 258 46-315 13-279 (280)
29 PRK10049 pgaA outer membrane p 99.4 1.7E-09 3.7E-14 111.4 32.5 293 6-311 83-454 (765)
30 PRK09782 bacteriophage N4 rece 99.4 1E-09 2.2E-14 113.9 29.1 224 40-271 476-707 (987)
31 TIGR02521 type_IV_pilW type IV 99.3 1E-09 2.2E-14 96.1 25.0 192 7-203 32-228 (234)
32 KOG1126 DNA-binding cell divis 99.3 1.5E-10 3.2E-15 109.8 20.5 242 21-270 334-586 (638)
33 PRK10049 pgaA outer membrane p 99.3 3.4E-09 7.3E-14 109.2 31.8 263 5-270 116-456 (765)
34 PRK10747 putative protoheme IX 99.3 4E-09 8.7E-14 100.4 28.3 252 8-268 120-388 (398)
35 TIGR02521 type_IV_pilW type IV 99.3 1.8E-09 3.9E-14 94.5 23.0 193 76-269 31-231 (234)
36 PRK12370 invasion protein regu 99.3 9.4E-09 2E-13 102.1 29.8 257 5-271 255-536 (553)
37 KOG4422 Uncharacterized conser 99.2 4.8E-09 1E-13 94.8 23.1 221 6-232 116-378 (625)
38 TIGR00540 hemY_coli hemY prote 99.2 2.9E-08 6.3E-13 95.0 28.5 255 8-268 120-397 (409)
39 KOG1840 Kinesin light chain [C 99.1 1.6E-08 3.5E-13 96.6 22.8 228 41-268 199-477 (508)
40 KOG2003 TPR repeat-containing 99.1 6.1E-08 1.3E-12 88.3 24.8 198 54-256 503-709 (840)
41 COG2956 Predicted N-acetylgluc 99.1 1.1E-07 2.4E-12 83.2 25.4 246 18-267 47-308 (389)
42 PRK14574 hmsH outer membrane p 99.1 1.4E-07 3.1E-12 96.3 30.5 255 13-270 109-479 (822)
43 KOG1840 Kinesin light chain [C 99.1 1.4E-08 3.1E-13 97.0 21.8 225 8-232 201-472 (508)
44 KOG1126 DNA-binding cell divis 99.1 1.3E-08 2.7E-13 96.9 20.7 251 10-270 357-620 (638)
45 KOG2076 RNA polymerase III tra 99.1 1.1E-07 2.3E-12 93.6 27.2 272 5-280 172-522 (895)
46 PRK12370 invasion protein regu 99.1 5E-08 1.1E-12 96.9 25.0 217 6-232 295-529 (553)
47 KOG1155 Anaphase-promoting com 99.1 9.4E-08 2E-12 87.4 24.2 252 14-269 235-494 (559)
48 PRK14574 hmsH outer membrane p 99.1 4.3E-07 9.3E-12 92.9 31.9 256 11-270 73-396 (822)
49 KOG1155 Anaphase-promoting com 99.1 1.3E-07 2.8E-12 86.5 24.5 268 15-315 271-555 (559)
50 COG3071 HemY Uncharacterized e 99.1 4.4E-07 9.4E-12 81.8 26.9 255 12-271 88-358 (400)
51 PRK11189 lipoprotein NlpI; Pro 98.9 4.1E-07 9E-12 83.0 23.0 209 56-272 41-267 (296)
52 KOG1129 TPR repeat-containing 98.9 1.1E-07 2.4E-12 83.3 17.7 219 47-270 229-458 (478)
53 KOG1173 Anaphase-promoting com 98.9 7.2E-07 1.6E-11 83.7 23.8 257 6-268 244-516 (611)
54 KOG4318 Bicoid mRNA stability 98.9 1.1E-08 2.4E-13 99.9 12.1 208 3-226 22-287 (1088)
55 COG3071 HemY Uncharacterized e 98.9 2.8E-06 6E-11 76.7 26.0 253 6-269 118-389 (400)
56 PRK11189 lipoprotein NlpI; Pro 98.9 2.3E-06 5E-11 78.1 24.8 211 16-234 36-260 (296)
57 KOG0495 HAT repeat protein [RN 98.9 6E-06 1.3E-10 78.9 27.5 288 7-308 441-743 (913)
58 KOG1129 TPR repeat-containing 98.8 2.1E-07 4.5E-12 81.6 15.9 221 10-235 227-454 (478)
59 COG2956 Predicted N-acetylgluc 98.8 6.1E-06 1.3E-10 72.6 24.3 267 10-280 73-357 (389)
60 KOG1915 Cell cycle control pro 98.8 6.7E-06 1.4E-10 75.8 25.5 299 3-313 171-536 (677)
61 PF12854 PPR_1: PPR repeat 98.8 8E-09 1.7E-13 60.3 4.4 33 71-103 2-34 (34)
62 PF12569 NARP1: NMDA receptor- 98.8 1.5E-05 3.2E-10 77.5 28.2 300 14-318 12-392 (517)
63 COG3063 PilF Tfp pilus assembl 98.8 5.6E-06 1.2E-10 69.5 21.7 195 43-240 37-240 (250)
64 KOG2076 RNA polymerase III tra 98.8 6.7E-06 1.4E-10 81.3 25.3 183 18-203 151-341 (895)
65 KOG1070 rRNA processing protei 98.7 1.5E-06 3.3E-11 89.2 20.5 206 64-274 1447-1667(1710)
66 PF12854 PPR_1: PPR repeat 98.7 2.4E-08 5.3E-13 58.3 4.2 32 173-204 2-33 (34)
67 KOG0495 HAT repeat protein [RN 98.7 2.6E-05 5.6E-10 74.7 26.2 252 14-270 487-748 (913)
68 KOG2002 TPR-containing nuclear 98.7 3.3E-06 7.1E-11 84.1 21.0 262 6-270 452-745 (1018)
69 COG3063 PilF Tfp pilus assembl 98.7 1.6E-05 3.4E-10 66.9 21.5 192 8-204 37-233 (250)
70 KOG0547 Translocase of outer m 98.7 2.1E-05 4.6E-10 72.9 24.1 254 9-269 118-490 (606)
71 PF04733 Coatomer_E: Coatomer 98.7 2.3E-06 5.1E-11 77.2 18.0 144 83-233 109-259 (290)
72 KOG2003 TPR repeat-containing 98.7 3.2E-05 7E-10 71.0 25.0 179 89-270 503-689 (840)
73 KOG1915 Cell cycle control pro 98.6 3.8E-05 8.1E-10 71.0 24.3 249 18-270 85-351 (677)
74 cd05804 StaR_like StaR_like; a 98.6 0.00016 3.6E-09 67.9 30.2 307 6-315 6-338 (355)
75 PF04733 Coatomer_E: Coatomer 98.6 1.8E-06 3.9E-11 78.0 15.1 242 14-270 9-265 (290)
76 KOG2002 TPR-containing nuclear 98.6 2.2E-05 4.9E-10 78.3 23.6 270 5-274 269-597 (1018)
77 cd05804 StaR_like StaR_like; a 98.6 7.9E-05 1.7E-09 70.0 26.8 256 13-271 50-337 (355)
78 TIGR00756 PPR pentatricopeptid 98.6 1E-07 2.2E-12 56.4 4.5 35 7-41 1-35 (35)
79 KOG0547 Translocase of outer m 98.6 7.6E-06 1.6E-10 75.7 18.3 211 52-268 337-564 (606)
80 KOG1173 Anaphase-promoting com 98.5 2.4E-05 5.3E-10 73.7 20.1 208 6-219 312-531 (611)
81 TIGR00756 PPR pentatricopeptid 98.5 2.8E-07 6.2E-12 54.4 4.5 35 108-142 1-35 (35)
82 TIGR03302 OM_YfiO outer membra 98.5 3.2E-05 6.9E-10 68.1 19.3 180 6-204 33-229 (235)
83 PF13812 PPR_3: Pentatricopept 98.5 3.4E-07 7.4E-12 53.7 4.5 34 6-39 1-34 (34)
84 KOG4340 Uncharacterized conser 98.4 0.00017 3.8E-09 62.9 22.1 251 9-266 13-335 (459)
85 KOG1070 rRNA processing protei 98.4 7.5E-05 1.6E-09 77.3 22.6 225 3-232 1454-1693(1710)
86 KOG1125 TPR repeat-containing 98.4 1.3E-05 2.8E-10 75.8 15.9 214 52-268 296-525 (579)
87 KOG1174 Anaphase-promoting com 98.4 0.0011 2.5E-08 60.5 26.3 180 13-199 201-389 (564)
88 PF13812 PPR_3: Pentatricopept 98.3 1.1E-06 2.3E-11 51.5 4.4 33 108-140 2-34 (34)
89 TIGR03302 OM_YfiO outer membra 98.3 0.00013 2.8E-09 64.3 18.6 176 40-236 32-229 (235)
90 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 5.3E-05 1.1E-09 70.9 16.3 128 77-208 170-298 (395)
91 PF01535 PPR: PPR repeat; Int 98.3 1.2E-06 2.6E-11 50.0 3.5 31 7-37 1-31 (31)
92 KOG1128 Uncharacterized conser 98.3 0.00011 2.3E-09 71.5 18.4 217 71-311 393-614 (777)
93 PF12569 NARP1: NMDA receptor- 98.2 0.0008 1.7E-08 65.6 24.5 256 48-309 11-330 (517)
94 PRK10370 formate-dependent nit 98.2 6.3E-05 1.4E-09 64.1 14.9 159 12-187 22-186 (198)
95 PLN02789 farnesyltranstransfer 98.2 0.00091 2E-08 61.3 22.9 143 8-154 39-188 (320)
96 KOG1125 TPR repeat-containing 98.2 0.00018 4E-09 68.2 18.0 213 15-232 294-520 (579)
97 PLN02789 farnesyltranstransfer 98.2 0.0024 5.3E-08 58.6 25.1 213 52-268 48-300 (320)
98 PRK10370 formate-dependent nit 98.2 0.00037 8.1E-09 59.4 18.4 157 46-219 21-186 (198)
99 PRK15359 type III secretion sy 98.2 7.9E-05 1.7E-09 60.1 13.6 92 110-204 27-118 (144)
100 COG4783 Putative Zn-dependent 98.1 0.0013 2.9E-08 61.5 22.1 145 108-271 307-455 (484)
101 PF01535 PPR: PPR repeat; Int 98.1 3.7E-06 8E-11 48.0 3.4 31 108-138 1-31 (31)
102 PRK04841 transcriptional regul 98.1 0.0025 5.4E-08 67.9 27.4 258 14-271 460-761 (903)
103 PRK15179 Vi polysaccharide bio 98.1 0.00063 1.4E-08 68.8 21.4 144 37-184 82-228 (694)
104 COG5010 TadD Flp pilus assembl 98.1 0.00054 1.2E-08 59.0 17.7 162 38-204 63-228 (257)
105 PRK15359 type III secretion sy 98.1 0.00017 3.7E-09 58.1 14.1 109 27-142 14-125 (144)
106 KOG4162 Predicted calmodulin-b 98.1 0.0026 5.7E-08 62.6 24.1 245 22-270 460-783 (799)
107 COG5010 TadD Flp pilus assembl 98.1 0.00017 3.8E-09 61.9 14.3 157 10-169 70-229 (257)
108 KOG3081 Vesicle coat complex C 98.1 0.0029 6.2E-08 54.7 21.4 159 64-229 96-260 (299)
109 TIGR02552 LcrH_SycD type III s 98.0 0.00024 5.2E-09 56.5 14.2 93 42-135 18-113 (135)
110 KOG3785 Uncharacterized conser 98.0 0.0034 7.3E-08 56.4 22.1 116 157-274 374-494 (557)
111 KOG3616 Selective LIM binding 98.0 0.00052 1.1E-08 66.9 17.8 190 52-265 743-932 (1636)
112 KOG1128 Uncharacterized conser 98.0 0.0003 6.5E-09 68.5 16.2 204 11-232 403-609 (777)
113 KOG2047 mRNA splicing factor [ 98.0 0.0067 1.4E-07 58.7 24.7 115 156-272 361-508 (835)
114 KOG3616 Selective LIM binding 98.0 0.00084 1.8E-08 65.5 18.6 132 116-264 741-873 (1636)
115 KOG0985 Vesicle coat protein c 98.0 0.0021 4.5E-08 65.0 21.2 235 9-267 987-1246(1666)
116 PF09976 TPR_21: Tetratricopep 98.0 0.001 2.2E-08 53.7 16.3 124 7-132 13-143 (145)
117 KOG1174 Anaphase-promoting com 97.9 0.0033 7.1E-08 57.6 20.3 282 5-323 231-523 (564)
118 PRK04841 transcriptional regul 97.9 0.017 3.6E-07 61.6 29.6 302 12-320 415-767 (903)
119 KOG1156 N-terminal acetyltrans 97.9 0.006 1.3E-07 59.0 22.6 162 4-170 6-171 (700)
120 PRK14720 transcript cleavage f 97.9 0.0038 8.3E-08 64.2 22.8 144 5-169 30-176 (906)
121 TIGR02552 LcrH_SycD type III s 97.9 0.00037 8E-09 55.4 12.3 98 5-104 16-113 (135)
122 KOG3617 WD40 and TPR repeat-co 97.8 0.0029 6.2E-08 62.8 19.3 205 5-232 756-989 (1416)
123 PF09976 TPR_21: Tetratricopep 97.8 0.0011 2.3E-08 53.6 14.3 122 78-203 14-143 (145)
124 KOG0624 dsRNA-activated protei 97.8 0.0066 1.4E-07 54.4 19.6 212 15-232 115-363 (504)
125 COG4783 Putative Zn-dependent 97.8 0.0042 9E-08 58.2 18.6 177 4-204 272-451 (484)
126 PF05843 Suf: Suppressor of fo 97.8 0.001 2.2E-08 60.1 14.7 127 7-135 2-135 (280)
127 PRK15179 Vi polysaccharide bio 97.8 0.0023 4.9E-08 64.8 18.4 140 5-148 85-228 (694)
128 cd00189 TPR Tetratricopeptide 97.8 0.00064 1.4E-08 49.3 11.3 94 8-103 2-95 (100)
129 KOG2047 mRNA splicing factor [ 97.7 0.027 5.9E-07 54.7 24.0 45 7-53 249-293 (835)
130 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00078 1.7E-08 63.2 13.3 118 146-268 173-295 (395)
131 KOG0985 Vesicle coat protein c 97.7 0.0085 1.9E-07 60.9 20.8 164 42-231 1105-1270(1666)
132 KOG1156 N-terminal acetyltrans 97.7 0.02 4.3E-07 55.6 22.2 252 18-273 53-320 (700)
133 PF04840 Vps16_C: Vps16, C-ter 97.7 0.022 4.7E-07 52.3 21.9 110 143-266 178-287 (319)
134 PF08579 RPM2: Mitochondrial r 97.7 0.0011 2.4E-08 49.5 10.8 79 10-88 29-116 (120)
135 KOG3081 Vesicle coat complex C 97.6 0.0083 1.8E-07 52.0 17.1 168 28-204 95-268 (299)
136 PRK02603 photosystem I assembl 97.6 0.0033 7.1E-08 52.4 14.4 110 44-157 38-166 (172)
137 PF08579 RPM2: Mitochondrial r 97.6 0.0017 3.6E-08 48.5 10.8 81 109-190 27-116 (120)
138 PRK14720 transcript cleavage f 97.6 0.014 3.1E-07 60.2 21.0 150 36-204 25-175 (906)
139 cd00189 TPR Tetratricopeptide 97.5 0.0016 3.5E-08 47.1 10.6 90 111-203 4-93 (100)
140 KOG2376 Signal recognition par 97.5 0.039 8.4E-07 53.1 21.3 119 13-138 19-141 (652)
141 PF05843 Suf: Suppressor of fo 97.5 0.0013 2.8E-08 59.4 11.3 126 42-169 2-134 (280)
142 KOG3060 Uncharacterized conser 97.5 0.0082 1.8E-07 51.6 15.0 149 117-269 62-219 (289)
143 PF12688 TPR_5: Tetratrico pep 97.5 0.0064 1.4E-07 46.9 13.3 108 12-119 7-118 (120)
144 CHL00033 ycf3 photosystem I as 97.5 0.0059 1.3E-07 50.6 14.3 91 42-132 36-138 (168)
145 PF12895 Apc3: Anaphase-promot 97.5 0.00036 7.8E-09 50.4 6.1 80 19-100 2-82 (84)
146 KOG0624 dsRNA-activated protei 97.4 0.084 1.8E-06 47.6 22.4 188 79-269 41-251 (504)
147 PF14938 SNAP: Soluble NSF att 97.4 0.039 8.4E-07 50.0 20.1 196 8-204 37-263 (282)
148 PRK15363 pathogenicity island 97.4 0.0021 4.5E-08 51.6 10.1 93 178-270 35-132 (157)
149 KOG4340 Uncharacterized conser 97.4 0.017 3.7E-07 50.8 16.3 158 75-235 143-335 (459)
150 KOG1914 mRNA cleavage and poly 97.4 0.035 7.5E-07 52.9 19.3 201 22-226 309-526 (656)
151 PF10037 MRP-S27: Mitochondria 97.4 0.0037 7.9E-08 59.1 13.2 119 37-155 62-186 (429)
152 KOG2376 Signal recognition par 97.4 0.077 1.7E-06 51.1 21.5 215 45-273 16-256 (652)
153 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0052 1.1E-07 47.2 11.9 22 113-134 45-66 (119)
154 PF12895 Apc3: Anaphase-promot 97.4 0.0013 2.9E-08 47.4 7.9 79 54-132 2-83 (84)
155 PF10037 MRP-S27: Mitochondria 97.3 0.0037 8E-08 59.1 12.6 120 71-191 61-186 (429)
156 KOG3060 Uncharacterized conser 97.3 0.09 2E-06 45.4 22.1 82 120-204 99-180 (289)
157 PRK10153 DNA-binding transcrip 97.3 0.014 3E-07 57.4 16.6 140 36-182 332-490 (517)
158 PF06239 ECSIT: Evolutionarily 97.3 0.0025 5.3E-08 53.7 9.7 97 96-193 34-153 (228)
159 PF06239 ECSIT: Evolutionarily 97.3 0.0041 8.8E-08 52.4 10.4 87 4-90 45-152 (228)
160 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.0099 2.1E-07 45.6 12.3 92 9-102 5-102 (119)
161 PLN03088 SGT1, suppressor of 97.2 0.0089 1.9E-07 56.0 14.0 84 16-101 12-95 (356)
162 PRK15363 pathogenicity island 97.2 0.01 2.2E-07 47.7 11.9 89 46-135 40-131 (157)
163 KOG3617 WD40 and TPR repeat-co 97.2 0.056 1.2E-06 54.1 19.0 212 18-263 812-1057(1416)
164 KOG3785 Uncharacterized conser 97.2 0.0075 1.6E-07 54.3 12.0 121 109-232 361-483 (557)
165 KOG2053 Mitochondrial inherita 97.1 0.37 8E-06 48.9 25.0 211 17-232 20-248 (932)
166 PLN03088 SGT1, suppressor of 97.1 0.014 3.1E-07 54.7 14.1 102 48-152 9-113 (356)
167 PF12688 TPR_5: Tetratrico pep 97.1 0.022 4.7E-07 44.0 12.6 108 113-221 7-117 (120)
168 KOG1130 Predicted G-alpha GTPa 97.1 0.0042 9E-08 57.0 9.8 253 15-268 26-342 (639)
169 PRK02603 photosystem I assembl 97.1 0.017 3.7E-07 48.0 13.2 61 109-169 37-99 (172)
170 PRK10153 DNA-binding transcrip 97.1 0.061 1.3E-06 52.9 18.3 141 70-213 331-489 (517)
171 KOG1914 mRNA cleavage and poly 97.1 0.14 3E-06 49.0 19.5 208 57-267 309-536 (656)
172 KOG1538 Uncharacterized conser 97.0 0.049 1.1E-06 53.0 16.6 222 8-271 600-847 (1081)
173 CHL00033 ycf3 photosystem I as 97.0 0.018 4E-07 47.6 12.4 61 109-169 37-99 (168)
174 PRK10866 outer membrane biogen 97.0 0.24 5.3E-06 43.6 21.0 57 47-104 38-97 (243)
175 KOG2796 Uncharacterized conser 96.9 0.072 1.6E-06 46.3 15.1 140 22-169 165-313 (366)
176 PF14559 TPR_19: Tetratricopep 96.9 0.0075 1.6E-07 41.3 7.8 49 54-103 4-52 (68)
177 PF12921 ATP13: Mitochondrial 96.9 0.015 3.3E-07 45.3 10.0 51 137-187 47-97 (126)
178 KOG0553 TPR repeat-containing 96.9 0.016 3.5E-07 51.1 11.1 98 117-219 91-191 (304)
179 PF14559 TPR_19: Tetratricopep 96.9 0.0054 1.2E-07 42.0 6.8 59 155-215 4-63 (68)
180 PF04840 Vps16_C: Vps16, C-ter 96.8 0.38 8.2E-06 44.2 21.1 107 109-233 179-285 (319)
181 PF12921 ATP13: Mitochondrial 96.8 0.018 3.9E-07 44.9 9.9 83 143-225 3-103 (126)
182 KOG2041 WD40 repeat protein [G 96.8 0.22 4.7E-06 49.2 18.6 218 38-270 689-952 (1189)
183 KOG2053 Mitochondrial inherita 96.7 0.36 7.9E-06 49.0 20.5 193 8-204 43-252 (932)
184 PF14938 SNAP: Soluble NSF att 96.7 0.12 2.6E-06 46.8 16.1 158 44-204 38-222 (282)
185 KOG0548 Molecular co-chaperone 96.7 0.14 3E-06 48.9 16.3 213 44-270 227-455 (539)
186 KOG4162 Predicted calmodulin-b 96.7 0.84 1.8E-05 45.7 29.1 341 8-363 359-794 (799)
187 KOG2796 Uncharacterized conser 96.7 0.12 2.7E-06 44.8 14.5 139 77-217 178-326 (366)
188 KOG1127 TPR repeat-containing 96.6 0.15 3.2E-06 52.4 16.9 153 76-232 492-652 (1238)
189 COG4700 Uncharacterized protei 96.6 0.32 7E-06 40.1 17.7 122 72-198 85-213 (251)
190 PF13414 TPR_11: TPR repeat; P 96.6 0.014 3E-07 40.1 7.2 65 5-70 2-67 (69)
191 KOG1127 TPR repeat-containing 96.5 0.31 6.6E-06 50.2 18.6 143 22-169 474-623 (1238)
192 PF13432 TPR_16: Tetratricopep 96.5 0.0094 2E-07 40.4 5.8 24 110-133 34-57 (65)
193 KOG1920 IkappaB kinase complex 96.5 0.52 1.1E-05 49.4 20.2 26 9-34 793-820 (1265)
194 KOG0553 TPR repeat-containing 96.4 0.047 1E-06 48.3 10.9 100 85-189 90-193 (304)
195 KOG0548 Molecular co-chaperone 96.4 0.84 1.8E-05 43.8 19.4 213 9-233 227-449 (539)
196 PF13414 TPR_11: TPR repeat; P 96.4 0.017 3.7E-07 39.6 6.6 61 41-102 3-64 (69)
197 COG3898 Uncharacterized membra 96.4 0.84 1.8E-05 42.2 24.5 124 9-136 85-217 (531)
198 KOG2280 Vacuolar assembly/sort 96.3 1.1 2.3E-05 44.9 20.3 247 5-264 506-793 (829)
199 PF13281 DUF4071: Domain of un 96.3 0.61 1.3E-05 43.5 18.0 72 81-152 146-227 (374)
200 PF03704 BTAD: Bacterial trans 96.3 0.096 2.1E-06 42.1 11.4 71 109-180 64-138 (146)
201 PF13432 TPR_16: Tetratricopep 96.2 0.031 6.7E-07 37.8 7.3 57 13-70 4-60 (65)
202 PF13525 YfiO: Outer membrane 96.2 0.67 1.4E-05 39.6 18.7 178 11-197 10-197 (203)
203 PF03704 BTAD: Bacterial trans 96.2 0.046 9.9E-07 44.0 9.1 69 9-78 65-138 (146)
204 PRK10803 tol-pal system protei 96.2 0.076 1.7E-06 47.3 11.2 94 109-204 145-243 (263)
205 PRK10803 tol-pal system protei 96.1 0.12 2.6E-06 46.1 12.1 94 43-136 145-246 (263)
206 KOG3941 Intermediate in Toll s 96.1 0.047 1E-06 47.8 9.1 100 95-195 53-175 (406)
207 KOG2041 WD40 repeat protein [G 96.0 0.76 1.6E-05 45.6 17.5 182 73-266 689-903 (1189)
208 PF13424 TPR_12: Tetratricopep 95.9 0.035 7.6E-07 39.1 6.5 62 7-68 6-73 (78)
209 COG4235 Cytochrome c biogenesi 95.9 0.51 1.1E-05 42.1 14.7 96 73-170 153-255 (287)
210 KOG1538 Uncharacterized conser 95.8 0.31 6.8E-06 47.7 14.0 240 7-267 557-830 (1081)
211 smart00299 CLH Clathrin heavy 95.8 0.75 1.6E-05 36.5 15.1 43 46-89 12-54 (140)
212 PF13424 TPR_12: Tetratricopep 95.7 0.036 7.8E-07 39.1 6.0 22 79-100 8-29 (78)
213 COG4235 Cytochrome c biogenesi 95.7 0.38 8.2E-06 42.8 13.1 111 38-151 153-269 (287)
214 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.22 4.8E-06 47.1 12.1 64 5-70 74-141 (453)
215 PF13371 TPR_9: Tetratricopept 95.6 0.12 2.7E-06 35.6 8.3 57 14-71 3-59 (73)
216 smart00299 CLH Clathrin heavy 95.6 0.9 1.9E-05 36.1 15.3 121 81-221 12-136 (140)
217 COG4700 Uncharacterized protei 95.5 1.2 2.6E-05 36.9 14.9 138 93-232 77-215 (251)
218 PRK15331 chaperone protein Sic 95.3 0.14 3.1E-06 41.5 8.4 83 187-269 46-133 (165)
219 KOG3941 Intermediate in Toll s 95.3 0.3 6.5E-06 43.0 10.8 101 3-103 64-186 (406)
220 KOG0550 Molecular chaperone (D 95.2 0.87 1.9E-05 42.4 14.1 250 14-271 57-351 (486)
221 PF04053 Coatomer_WDAD: Coatom 95.2 0.59 1.3E-05 45.0 14.0 162 15-208 270-432 (443)
222 PF13371 TPR_9: Tetratricopept 95.2 0.12 2.6E-06 35.7 7.1 50 86-135 5-57 (73)
223 COG3898 Uncharacterized membra 95.1 2.9 6.2E-05 38.9 25.2 241 18-270 132-392 (531)
224 PLN03098 LPA1 LOW PSII ACCUMUL 95.0 0.45 9.8E-06 45.1 12.0 63 40-104 74-140 (453)
225 PRK15331 chaperone protein Sic 94.9 0.28 6E-06 39.8 8.9 85 50-135 46-133 (165)
226 COG5107 RNA14 Pre-mRNA 3'-end 94.4 1.8 4E-05 40.8 14.2 146 40-190 396-547 (660)
227 PRK10866 outer membrane biogen 94.3 3.5 7.5E-05 36.4 19.6 176 76-268 32-239 (243)
228 KOG2610 Uncharacterized conser 94.3 1.4 2.9E-05 40.0 12.5 48 121-169 117-164 (491)
229 COG5107 RNA14 Pre-mRNA 3'-end 94.2 1.4 3.1E-05 41.5 13.0 122 107-232 397-524 (660)
230 KOG4555 TPR repeat-containing 94.2 1.1 2.3E-05 34.8 10.2 49 52-101 54-102 (175)
231 PF09205 DUF1955: Domain of un 94.1 1.3 2.8E-05 34.5 10.4 135 120-273 15-152 (161)
232 COG1729 Uncharacterized protei 94.0 1 2.2E-05 39.7 11.2 95 109-204 144-241 (262)
233 PF10300 DUF3808: Protein of u 94.0 5.1 0.00011 39.2 17.3 177 23-204 174-373 (468)
234 COG3118 Thioredoxin domain-con 93.7 3.8 8.3E-05 36.6 14.2 120 150-271 142-266 (304)
235 PF10300 DUF3808: Protein of u 93.7 2.4 5.1E-05 41.5 14.4 171 58-234 174-371 (468)
236 KOG2610 Uncharacterized conser 93.5 2.4 5.2E-05 38.5 12.7 148 19-167 116-272 (491)
237 PF04053 Coatomer_WDAD: Coatom 93.4 2.5 5.4E-05 40.8 13.8 131 118-271 272-403 (443)
238 PF09205 DUF1955: Domain of un 93.4 3 6.5E-05 32.5 12.9 64 109-174 88-151 (161)
239 PF13170 DUF4003: Protein of u 93.3 3.4 7.3E-05 37.6 13.9 126 57-185 78-224 (297)
240 KOG0543 FKBP-type peptidyl-pro 93.3 1.4 3E-05 41.0 11.3 118 83-204 215-352 (397)
241 PF13281 DUF4071: Domain of un 93.1 7.6 0.00017 36.4 16.2 158 113-271 147-335 (374)
242 PF13431 TPR_17: Tetratricopep 93.1 0.074 1.6E-06 30.7 1.9 28 234-261 6-33 (34)
243 PF13512 TPR_18: Tetratricopep 92.9 2.4 5.3E-05 33.6 10.6 50 87-136 21-76 (142)
244 PF13170 DUF4003: Protein of u 92.9 7.3 0.00016 35.5 16.5 126 22-149 78-224 (297)
245 KOG2114 Vacuolar assembly/sort 92.8 5.9 0.00013 40.5 15.5 219 7-240 284-520 (933)
246 COG3629 DnrI DNA-binding trans 92.8 1.1 2.4E-05 40.0 9.7 78 109-187 155-236 (280)
247 COG0457 NrfG FOG: TPR repeat [ 92.7 5.4 0.00012 33.5 23.0 213 19-233 36-259 (291)
248 PF07035 Mic1: Colon cancer-as 92.5 5.1 0.00011 32.9 15.8 136 127-272 14-151 (167)
249 PF10602 RPN7: 26S proteasome 92.4 2.7 5.8E-05 35.0 11.1 59 77-135 37-101 (177)
250 PF13176 TPR_7: Tetratricopept 92.2 0.39 8.4E-06 28.0 4.2 26 8-33 1-26 (36)
251 COG1729 Uncharacterized protei 92.0 2 4.4E-05 37.8 10.1 94 78-172 144-245 (262)
252 COG1747 Uncharacterized N-term 91.8 13 0.00029 36.0 18.2 156 8-170 68-233 (711)
253 PF10602 RPN7: 26S proteasome 91.6 5.1 0.00011 33.4 11.9 60 8-67 38-99 (177)
254 PF13428 TPR_14: Tetratricopep 91.4 0.75 1.6E-05 28.1 5.1 28 8-35 3-30 (44)
255 COG4649 Uncharacterized protei 91.2 6 0.00013 32.5 11.1 117 87-204 69-193 (221)
256 COG4105 ComL DNA uptake lipopr 91.0 10 0.00022 33.3 18.2 146 115-270 42-196 (254)
257 PF13176 TPR_7: Tetratricopept 90.5 0.67 1.5E-05 26.9 4.0 24 110-133 2-25 (36)
258 KOG1941 Acetylcholine receptor 90.1 12 0.00026 34.6 13.2 43 18-60 18-62 (518)
259 PF08631 SPO22: Meiosis protei 89.9 14 0.00031 33.2 22.4 135 7-142 37-192 (278)
260 PF13525 YfiO: Outer membrane 89.9 11 0.00025 32.0 19.5 168 47-228 11-196 (203)
261 PF02284 COX5A: Cytochrome c o 89.8 2.9 6.3E-05 30.9 7.5 62 123-186 26-87 (108)
262 PF13428 TPR_14: Tetratricopep 89.7 1.6 3.4E-05 26.7 5.5 28 43-70 3-30 (44)
263 TIGR02508 type_III_yscG type I 89.6 6.2 0.00013 29.1 9.0 87 57-147 21-107 (115)
264 cd00923 Cyt_c_Oxidase_Va Cytoc 89.4 3.1 6.7E-05 30.4 7.4 63 122-186 22-84 (103)
265 KOG4555 TPR repeat-containing 89.4 3.7 7.9E-05 32.0 8.1 85 85-170 52-143 (175)
266 KOG0543 FKBP-type peptidyl-pro 89.3 5.6 0.00012 37.1 10.9 60 43-103 259-318 (397)
267 KOG2114 Vacuolar assembly/sort 89.2 13 0.00027 38.2 13.8 136 18-168 380-516 (933)
268 PF13431 TPR_17: Tetratricopep 89.1 0.74 1.6E-05 26.4 3.4 24 73-96 10-33 (34)
269 PF00515 TPR_1: Tetratricopept 88.8 1.1 2.4E-05 25.3 4.1 28 7-34 2-29 (34)
270 TIGR02561 HrpB1_HrpK type III 88.6 11 0.00024 30.1 11.8 89 53-143 22-113 (153)
271 KOG2280 Vacuolar assembly/sort 88.6 30 0.00066 35.2 22.3 103 162-267 668-770 (829)
272 COG0457 NrfG FOG: TPR repeat [ 88.5 13 0.00029 30.9 27.1 215 54-270 36-265 (291)
273 COG3629 DnrI DNA-binding trans 88.4 7 0.00015 35.0 10.6 59 43-102 155-213 (280)
274 PF04184 ST7: ST7 protein; In 88.3 26 0.00056 34.0 17.0 138 18-169 180-322 (539)
275 KOG1585 Protein required for f 88.0 17 0.00038 31.7 17.0 83 43-133 33-117 (308)
276 COG3118 Thioredoxin domain-con 87.9 20 0.00043 32.2 18.2 137 49-190 142-284 (304)
277 KOG1920 IkappaB kinase complex 87.9 43 0.00093 36.0 20.2 81 184-268 971-1053(1265)
278 PF11207 DUF2989: Protein of u 87.8 6.3 0.00014 33.3 9.3 67 59-126 124-197 (203)
279 KOG4570 Uncharacterized conser 87.6 5.5 0.00012 35.9 9.2 98 70-171 58-164 (418)
280 PF13374 TPR_10: Tetratricopep 87.4 1.5 3.3E-05 25.9 4.4 29 6-34 2-30 (42)
281 cd00923 Cyt_c_Oxidase_Va Cytoc 86.7 6.7 0.00014 28.7 7.6 48 21-68 22-69 (103)
282 PF00515 TPR_1: Tetratricopept 86.6 1.7 3.6E-05 24.6 3.9 27 109-135 3-29 (34)
283 PF02259 FAT: FAT domain; Int 86.5 27 0.00059 32.3 18.5 90 173-271 117-214 (352)
284 PRK11906 transcriptional regul 85.8 35 0.00075 32.9 16.4 43 59-102 322-364 (458)
285 PF04184 ST7: ST7 protein; In 85.6 37 0.00079 33.0 14.1 79 147-225 264-346 (539)
286 PF00637 Clathrin: Region in C 85.1 0.28 6E-06 39.2 0.1 53 48-100 14-66 (143)
287 PRK11906 transcriptional regul 85.0 38 0.00082 32.6 14.2 82 123-208 320-403 (458)
288 PF13929 mRNA_stabil: mRNA sta 84.8 12 0.00027 33.4 10.1 114 119-232 140-260 (292)
289 PF09613 HrpB1_HrpK: Bacterial 84.5 20 0.00044 29.1 13.4 19 86-104 54-72 (160)
290 PF00637 Clathrin: Region in C 84.4 0.44 9.6E-06 38.0 1.0 86 11-103 12-97 (143)
291 PF13374 TPR_10: Tetratricopep 84.0 2.7 5.8E-05 24.8 4.2 26 109-134 4-29 (42)
292 PF07719 TPR_2: Tetratricopept 82.8 3.1 6.8E-05 23.2 4.0 27 8-34 3-29 (34)
293 KOG2297 Predicted translation 82.5 38 0.00082 30.7 13.5 46 4-51 109-156 (412)
294 PF07035 Mic1: Colon cancer-as 82.4 26 0.00056 28.8 15.0 133 26-169 14-147 (167)
295 COG4785 NlpI Lipoprotein NlpI, 82.2 32 0.00069 29.6 13.9 180 88-272 77-268 (297)
296 KOG1941 Acetylcholine receptor 81.4 44 0.00095 31.1 12.2 124 45-168 126-272 (518)
297 KOG1130 Predicted G-alpha GTPa 80.8 3.3 7.2E-05 38.7 5.1 128 42-169 196-342 (639)
298 PF02284 COX5A: Cytochrome c o 80.4 15 0.00032 27.3 7.3 46 24-69 28-73 (108)
299 PF07079 DUF1347: Protein of u 80.3 57 0.0012 31.4 21.9 248 16-269 16-326 (549)
300 COG4105 ComL DNA uptake lipopr 80.2 41 0.00089 29.6 19.8 61 9-70 38-100 (254)
301 PF11207 DUF2989: Protein of u 80.0 20 0.00042 30.4 9.0 74 124-198 123-198 (203)
302 PF07721 TPR_4: Tetratricopept 79.9 3.4 7.4E-05 21.8 3.1 21 80-100 5-25 (26)
303 PF07719 TPR_2: Tetratricopept 79.8 4.5 9.8E-05 22.5 3.9 26 110-135 4-29 (34)
304 KOG0550 Molecular chaperone (D 79.6 57 0.0012 30.9 16.3 159 41-204 168-347 (486)
305 PF13762 MNE1: Mitochondrial s 78.4 33 0.00071 27.4 10.9 77 79-155 42-128 (145)
306 PF13512 TPR_18: Tetratricopep 77.1 35 0.00076 27.1 12.7 54 17-71 21-77 (142)
307 PF09477 Type_III_YscG: Bacter 76.3 30 0.00065 25.9 9.6 87 55-145 20-106 (116)
308 KOG0276 Vesicle coat complex C 76.1 34 0.00074 34.0 10.5 147 88-267 598-747 (794)
309 COG5159 RPN6 26S proteasome re 75.4 50 0.0011 29.7 10.5 134 12-145 9-167 (421)
310 PF13181 TPR_8: Tetratricopept 75.4 8.9 0.00019 21.3 4.3 27 8-34 3-29 (34)
311 PF11768 DUF3312: Protein of u 75.3 40 0.00087 33.1 10.8 56 81-136 413-473 (545)
312 KOG4570 Uncharacterized conser 75.2 14 0.00031 33.4 7.2 91 9-103 67-162 (418)
313 PF10366 Vps39_1: Vacuolar sor 75.2 27 0.00059 26.3 7.9 27 109-135 41-67 (108)
314 KOG1464 COP9 signalosome, subu 74.9 62 0.0013 28.8 12.6 82 19-100 40-129 (440)
315 PF14853 Fis1_TPR_C: Fis1 C-te 74.3 20 0.00044 23.0 6.4 49 245-319 5-53 (53)
316 TIGR02561 HrpB1_HrpK type III 73.5 20 0.00042 28.8 6.9 49 223-271 23-74 (153)
317 PF07163 Pex26: Pex26 protein; 72.0 59 0.0013 29.1 10.1 86 114-202 90-182 (309)
318 COG3947 Response regulator con 72.0 30 0.00065 31.1 8.4 60 43-103 281-340 (361)
319 COG3947 Response regulator con 70.9 18 0.00038 32.5 6.7 66 78-143 281-354 (361)
320 PF13181 TPR_8: Tetratricopept 70.6 12 0.00027 20.7 4.1 27 109-135 3-29 (34)
321 PHA02875 ankyrin repeat protei 69.4 1.1E+02 0.0023 29.3 15.2 200 14-233 7-222 (413)
322 PF13174 TPR_6: Tetratricopept 69.1 7 0.00015 21.5 2.8 27 244-270 3-29 (33)
323 KOG4648 Uncharacterized conser 68.9 17 0.00037 33.4 6.3 54 14-69 105-159 (536)
324 PF11663 Toxin_YhaV: Toxin wit 68.4 6.1 0.00013 30.9 3.0 33 118-152 106-138 (140)
325 KOG0276 Vesicle coat complex C 68.0 1.2E+02 0.0027 30.3 12.2 100 87-204 648-747 (794)
326 TIGR03504 FimV_Cterm FimV C-te 67.9 14 0.0003 22.7 4.0 22 114-135 6-27 (44)
327 PF11663 Toxin_YhaV: Toxin wit 67.9 5.5 0.00012 31.1 2.7 32 18-51 107-138 (140)
328 PF07079 DUF1347: Protein of u 67.8 1.2E+02 0.0026 29.3 21.0 199 41-245 298-529 (549)
329 TIGR03504 FimV_Cterm FimV C-te 67.7 17 0.00038 22.2 4.4 22 48-69 6-27 (44)
330 PF11846 DUF3366: Domain of un 66.4 23 0.0005 29.8 6.7 51 154-204 120-170 (193)
331 COG4455 ImpE Protein of avirul 66.2 55 0.0012 28.2 8.4 59 109-169 3-62 (273)
332 PRK09687 putative lyase; Provi 65.9 1E+02 0.0022 27.8 24.0 215 3-235 34-259 (280)
333 PF09613 HrpB1_HrpK: Bacterial 65.5 73 0.0016 25.9 11.0 48 154-204 22-70 (160)
334 KOG4234 TPR repeat-containing 64.7 81 0.0018 26.9 9.0 85 52-136 106-197 (271)
335 KOG0890 Protein kinase of the 64.7 3E+02 0.0064 32.7 20.9 63 210-272 1670-1733(2382)
336 KOG0991 Replication factor C, 64.5 99 0.0021 27.1 10.5 89 117-208 169-271 (333)
337 KOG4077 Cytochrome c oxidase, 64.4 46 0.001 25.8 6.9 71 125-206 67-137 (149)
338 PRK15180 Vi polysaccharide bio 64.4 36 0.00079 32.8 7.8 108 120-232 302-413 (831)
339 COG2976 Uncharacterized protei 64.3 88 0.0019 26.5 14.7 53 116-170 135-187 (207)
340 PF08631 SPO22: Meiosis protei 63.4 1.1E+02 0.0025 27.4 24.7 18 17-34 4-21 (278)
341 PF14669 Asp_Glu_race_2: Putat 62.7 29 0.00062 29.1 6.0 57 45-101 136-206 (233)
342 KOG2396 HAT (Half-A-TPR) repea 62.6 1.6E+02 0.0035 28.8 17.0 217 4-232 313-552 (568)
343 KOG2066 Vacuolar assembly/sort 62.3 1.9E+02 0.004 30.0 12.6 51 84-134 364-419 (846)
344 KOG1586 Protein required for f 62.2 1.1E+02 0.0024 26.8 11.0 16 189-204 165-180 (288)
345 COG4455 ImpE Protein of avirul 61.8 78 0.0017 27.4 8.5 49 49-98 9-57 (273)
346 PF08311 Mad3_BUB1_I: Mad3/BUB 61.6 74 0.0016 24.7 8.6 58 42-101 66-124 (126)
347 COG4649 Uncharacterized protei 61.4 95 0.0021 25.8 14.2 129 42-171 60-196 (221)
348 KOG1586 Protein required for f 61.2 1.1E+02 0.0025 26.7 11.2 19 252-270 165-183 (288)
349 PF10579 Rapsyn_N: Rapsyn N-te 61.2 24 0.00052 24.8 4.6 16 182-197 47-62 (80)
350 KOG2396 HAT (Half-A-TPR) repea 60.6 1.7E+02 0.0038 28.6 17.0 240 22-268 298-557 (568)
351 smart00028 TPR Tetratricopepti 59.7 21 0.00045 18.4 3.7 27 8-34 3-29 (34)
352 PF13934 ELYS: Nuclear pore co 58.6 1.2E+02 0.0027 26.3 11.9 103 110-221 79-183 (226)
353 KOG4077 Cytochrome c oxidase, 58.5 86 0.0019 24.4 7.6 44 60-103 68-111 (149)
354 PF11848 DUF3368: Domain of un 58.3 43 0.00093 20.9 5.2 33 118-150 13-45 (48)
355 cd08819 CARD_MDA5_2 Caspase ac 57.7 69 0.0015 23.1 7.2 38 88-126 48-85 (88)
356 KOG2066 Vacuolar assembly/sort 57.7 2.4E+02 0.0052 29.3 19.9 95 8-106 394-535 (846)
357 PF11848 DUF3368: Domain of un 57.6 44 0.00096 20.8 5.3 31 18-48 14-44 (48)
358 PRK10564 maltose regulon perip 56.9 23 0.00049 32.0 5.0 41 109-149 259-299 (303)
359 PRK13800 putative oxidoreducta 56.5 2.9E+02 0.0062 29.8 25.0 78 177-254 788-865 (897)
360 PF07163 Pex26: Pex26 protein; 56.0 1.5E+02 0.0034 26.6 10.1 88 43-130 85-181 (309)
361 PF06552 TOM20_plant: Plant sp 54.1 1E+02 0.0022 25.7 7.9 17 138-154 64-81 (186)
362 PF14689 SPOB_a: Sensor_kinase 53.7 31 0.00068 22.9 4.2 21 113-133 29-49 (62)
363 KOG2659 LisH motif-containing 53.3 1.5E+02 0.0033 25.7 9.3 92 109-203 28-128 (228)
364 PF10579 Rapsyn_N: Rapsyn N-te 53.0 58 0.0013 22.9 5.4 45 18-62 18-64 (80)
365 COG2909 MalT ATP-dependent tra 52.9 3E+02 0.0066 29.0 21.3 190 87-280 426-657 (894)
366 PRK09687 putative lyase; Provi 51.8 1.8E+02 0.004 26.2 24.1 217 38-270 34-263 (280)
367 KOG4648 Uncharacterized conser 50.8 31 0.00066 31.8 4.8 104 150-261 105-215 (536)
368 PF11846 DUF3366: Domain of un 50.3 76 0.0017 26.6 7.1 32 104-135 141-172 (193)
369 PF11768 DUF3312: Protein of u 49.9 1.8E+02 0.0039 28.9 10.0 60 109-170 410-472 (545)
370 PF08967 DUF1884: Domain of un 48.6 18 0.00039 25.4 2.4 30 297-326 4-33 (85)
371 PF14689 SPOB_a: Sensor_kinase 48.6 31 0.00067 22.9 3.5 24 11-34 28-51 (62)
372 KOG0292 Vesicle coat complex C 48.5 36 0.00078 35.4 5.3 43 189-234 654-696 (1202)
373 KOG1550 Extracellular protein 47.4 3.1E+02 0.0067 27.6 15.1 17 18-34 261-277 (552)
374 PF02847 MA3: MA3 domain; Int 46.6 53 0.0012 24.6 5.1 64 10-75 6-71 (113)
375 PF09670 Cas_Cas02710: CRISPR- 46.5 2.6E+02 0.0057 26.5 10.9 59 110-170 135-197 (379)
376 PF14669 Asp_Glu_race_2: Putat 45.6 1.9E+02 0.0041 24.5 13.1 59 146-204 136-207 (233)
377 KOG3364 Membrane protein invol 44.6 1.4E+02 0.003 23.7 6.8 26 245-270 75-100 (149)
378 KOG3677 RNA polymerase I-assoc 44.6 2E+02 0.0043 27.5 9.0 61 42-102 236-298 (525)
379 PF10366 Vps39_1: Vacuolar sor 44.6 51 0.0011 24.8 4.5 26 44-69 42-67 (108)
380 PRK12798 chemotaxis protein; R 44.4 2.9E+02 0.0064 26.4 19.9 180 89-271 125-325 (421)
381 KOG3807 Predicted membrane pro 44.3 2.6E+02 0.0057 25.8 9.5 50 118-169 286-338 (556)
382 PF13762 MNE1: Mitochondrial s 43.4 1.7E+02 0.0037 23.4 9.3 90 30-119 26-127 (145)
383 PRK13342 recombination factor 43.2 3.1E+02 0.0067 26.3 16.0 43 109-151 229-274 (413)
384 PRK15180 Vi polysaccharide bio 42.8 2.6E+02 0.0055 27.4 9.6 116 18-136 301-420 (831)
385 PRK11619 lytic murein transgly 42.7 4E+02 0.0086 27.5 23.7 241 14-268 107-373 (644)
386 PF04097 Nic96: Nup93/Nic96; 42.2 4E+02 0.0086 27.3 16.3 65 6-72 112-183 (613)
387 PF11525 CopK: Copper resistan 41.9 12 0.00025 25.3 0.6 21 386-406 8-28 (73)
388 COG1747 Uncharacterized N-term 41.7 3.6E+02 0.0078 26.7 23.2 153 73-232 63-227 (711)
389 PF08424 NRDE-2: NRDE-2, neces 40.6 3E+02 0.0064 25.4 15.7 29 145-174 157-185 (321)
390 KOG1585 Protein required for f 39.6 2.7E+02 0.0059 24.7 16.5 201 9-232 34-249 (308)
391 PF04097 Nic96: Nup93/Nic96; 39.5 4.4E+02 0.0094 27.0 14.8 88 117-208 424-535 (613)
392 PF11838 ERAP1_C: ERAP1-like C 38.6 3E+02 0.0066 25.0 15.5 28 142-169 201-228 (324)
393 KOG2063 Vacuolar assembly/sort 38.4 5.3E+02 0.011 27.6 13.0 19 16-34 356-374 (877)
394 KOG4234 TPR repeat-containing 37.8 2.6E+02 0.0057 24.0 9.1 86 84-171 103-197 (271)
395 cd00280 TRFH Telomeric Repeat 37.3 1.5E+02 0.0033 24.8 6.4 33 185-217 118-150 (200)
396 PRK11639 zinc uptake transcrip 36.9 1.5E+02 0.0033 24.3 6.7 62 133-196 17-78 (169)
397 COG4785 NlpI Lipoprotein NlpI, 36.8 2.8E+02 0.0062 24.1 15.1 56 43-99 101-156 (297)
398 COG0735 Fur Fe2+/Zn2+ uptake r 36.4 2E+02 0.0043 23.0 7.1 66 129-196 8-73 (145)
399 PF06552 TOM20_plant: Plant sp 36.4 2.1E+02 0.0045 24.0 7.1 41 92-138 96-138 (186)
400 PF02607 B12-binding_2: B12 bi 36.1 74 0.0016 22.0 4.1 39 17-55 12-50 (79)
401 KOG3807 Predicted membrane pro 35.9 1.4E+02 0.003 27.6 6.5 52 153-204 286-337 (556)
402 smart00804 TAP_C C-terminal do 35.7 32 0.00069 23.0 2.0 23 20-42 39-62 (63)
403 cd08326 CARD_CASP9 Caspase act 34.7 1.7E+02 0.0037 20.9 6.8 61 62-126 20-80 (84)
404 PF10255 Paf67: RNA polymerase 34.2 2.9E+02 0.0063 26.5 8.7 53 81-133 127-190 (404)
405 PF12926 MOZART2: Mitotic-spin 34.1 1.8E+02 0.0039 20.9 7.8 41 62-102 29-69 (88)
406 KOG4334 Uncharacterized conser 34.1 14 0.00029 35.4 0.0 179 4-191 372-573 (650)
407 COG5159 RPN6 26S proteasome re 33.4 3.7E+02 0.0081 24.4 13.1 51 115-165 11-68 (421)
408 KOG1258 mRNA processing protei 33.3 5.1E+02 0.011 26.0 23.5 93 178-270 297-395 (577)
409 PF14853 Fis1_TPR_C: Fis1 C-te 33.3 1.3E+02 0.0029 19.2 5.3 32 12-45 7-38 (53)
410 smart00386 HAT HAT (Half-A-TPR 33.0 81 0.0018 16.6 4.2 27 56-83 2-28 (33)
411 PF11817 Foie-gras_1: Foie gra 33.0 2.3E+02 0.005 24.9 7.7 56 113-168 184-244 (247)
412 PF11817 Foie-gras_1: Foie gra 32.8 1.6E+02 0.0035 25.9 6.6 52 181-232 181-240 (247)
413 TIGR03581 EF_0839 conserved hy 32.5 1.6E+02 0.0036 25.2 6.0 82 22-103 137-235 (236)
414 PF09454 Vps23_core: Vps23 cor 32.1 1.6E+02 0.0035 19.8 5.2 46 105-151 6-51 (65)
415 TIGR02270 conserved hypothetic 31.9 4.7E+02 0.01 25.2 25.6 234 13-267 45-278 (410)
416 KOG0686 COP9 signalosome, subu 31.8 4.7E+02 0.01 25.1 13.6 59 77-135 151-215 (466)
417 cd00280 TRFH Telomeric Repeat 31.5 3.2E+02 0.0069 23.0 8.0 23 148-170 117-139 (200)
418 PF02607 B12-binding_2: B12 bi 31.2 1.1E+02 0.0024 21.1 4.4 37 118-154 12-48 (79)
419 PF12862 Apc5: Anaphase-promot 31.2 2E+02 0.0044 20.7 7.4 54 16-69 8-69 (94)
420 PF03745 DUF309: Domain of unk 31.1 1.6E+02 0.0035 19.5 5.4 47 118-164 10-61 (62)
421 KOG4507 Uncharacterized conser 30.9 3E+02 0.0064 27.8 8.2 85 52-136 618-705 (886)
422 PRK10564 maltose regulon perip 30.7 1.2E+02 0.0026 27.6 5.3 43 37-79 252-295 (303)
423 PF02259 FAT: FAT domain; Int 30.6 4.2E+02 0.0092 24.2 16.5 63 141-204 145-210 (352)
424 KOG0403 Neoplastic transformat 30.6 5.2E+02 0.011 25.2 16.6 60 213-272 512-574 (645)
425 cd07153 Fur_like Ferric uptake 30.3 1.2E+02 0.0026 22.7 4.8 44 114-157 7-50 (116)
426 COG2178 Predicted RNA-binding 30.0 3.4E+02 0.0075 23.0 10.6 52 85-136 38-98 (204)
427 COG2178 Predicted RNA-binding 30.0 3.4E+02 0.0075 23.0 7.8 18 252-269 132-149 (204)
428 cd07153 Fur_like Ferric uptake 29.9 1.4E+02 0.003 22.4 5.1 45 12-56 6-50 (116)
429 smart00544 MA3 Domain in DAP-5 29.8 2.4E+02 0.0051 21.0 9.8 62 9-72 5-68 (113)
430 COG2976 Uncharacterized protei 29.7 3.5E+02 0.0076 23.0 13.1 105 94-204 70-185 (207)
431 COG5108 RPO41 Mitochondrial DN 29.6 2.4E+02 0.0051 28.9 7.4 47 112-158 33-81 (1117)
432 PF08225 Antimicrobial19: Pseu 29.1 33 0.00072 17.0 0.9 13 370-382 9-21 (23)
433 KOG3636 Uncharacterized conser 28.7 5.5E+02 0.012 24.9 9.7 83 35-118 177-271 (669)
434 KOG1258 mRNA processing protei 28.5 6.2E+02 0.013 25.5 17.5 177 74-255 295-489 (577)
435 KOG0292 Vesicle coat complex C 28.3 7.7E+02 0.017 26.4 11.3 127 85-235 652-778 (1202)
436 PF07575 Nucleopor_Nup85: Nup8 28.3 2.6E+02 0.0056 28.3 7.9 57 40-98 404-460 (566)
437 PF13934 ELYS: Nuclear pore co 27.7 4.1E+02 0.0088 23.1 12.4 54 113-169 114-167 (226)
438 COG5210 GTPase-activating prot 27.7 5.5E+02 0.012 25.4 10.0 82 22-105 319-406 (496)
439 PRK10941 hypothetical protein; 27.3 4.6E+02 0.0099 23.5 10.5 58 10-68 185-242 (269)
440 PF01475 FUR: Ferric uptake re 26.9 1.3E+02 0.0028 22.9 4.4 46 112-157 12-57 (120)
441 PF09986 DUF2225: Uncharacteri 26.7 4.1E+02 0.009 22.8 8.4 49 123-171 141-194 (214)
442 PHA02875 ankyrin repeat protei 26.6 5.6E+02 0.012 24.3 11.9 205 50-274 8-228 (413)
443 cd08332 CARD_CASP2 Caspase act 26.5 2.5E+02 0.0054 20.2 7.4 36 88-123 46-81 (90)
444 PF09670 Cas_Cas02710: CRISPR- 26.4 5.6E+02 0.012 24.3 13.4 18 18-35 143-160 (379)
445 KOG4567 GTPase-activating prot 26.4 5.1E+02 0.011 23.8 10.5 41 129-169 265-305 (370)
446 PF01475 FUR: Ferric uptake re 25.5 1.4E+02 0.0031 22.6 4.5 42 50-91 16-57 (120)
447 TIGR01914 cas_Csa4 CRISPR-asso 25.4 3.6E+02 0.0079 24.9 7.3 71 81-152 279-351 (354)
448 PF07720 TPR_3: Tetratricopept 25.3 1.5E+02 0.0032 17.2 3.4 22 9-30 4-25 (36)
449 PRK14015 pepN aminopeptidase N 25.3 6.2E+02 0.013 27.3 10.3 150 110-263 685-846 (875)
450 COG0735 Fur Fe2+/Zn2+ uptake r 25.0 1.8E+02 0.0038 23.2 5.0 65 28-93 8-72 (145)
451 KOG3364 Membrane protein invol 24.2 2.3E+02 0.005 22.5 5.1 19 186-204 79-97 (149)
452 PF10475 DUF2450: Protein of u 23.8 5.5E+02 0.012 23.2 8.8 23 113-135 133-155 (291)
453 cd07229 Pat_TGL3_like Triacylg 23.8 4E+02 0.0086 25.5 7.7 22 138-159 233-254 (391)
454 KOG0687 26S proteasome regulat 23.5 6E+02 0.013 23.6 11.3 156 91-268 37-208 (393)
455 PF02847 MA3: MA3 domain; Int 23.1 1.8E+02 0.0038 21.7 4.6 20 114-133 9-28 (113)
456 cd04440 DEP_2_P-Rex DEP (Dishe 22.9 75 0.0016 23.2 2.2 34 369-403 52-85 (93)
457 KOG2297 Predicted translation 22.7 6.1E+02 0.013 23.4 10.8 169 34-232 159-343 (412)
458 PRK08691 DNA polymerase III su 22.4 9E+02 0.02 25.2 11.8 32 109-141 248-279 (709)
459 PF14044 NETI: NETI protein 22.3 83 0.0018 20.4 2.0 13 311-323 14-26 (57)
460 PF11838 ERAP1_C: ERAP1-like C 22.2 5.9E+02 0.013 23.0 21.0 75 158-232 146-223 (324)
461 PF00244 14-3-3: 14-3-3 protei 22.1 5.4E+02 0.012 22.5 11.5 58 12-69 7-65 (236)
462 PF12926 MOZART2: Mitotic-spin 22.1 3.1E+02 0.0067 19.8 8.2 44 27-70 29-72 (88)
463 KOG0403 Neoplastic transformat 21.7 5.1E+02 0.011 25.2 7.7 74 111-192 513-588 (645)
464 COG1466 HolA DNA polymerase II 21.5 6.5E+02 0.014 23.3 8.9 77 62-140 148-241 (334)
465 PF08311 Mad3_BUB1_I: Mad3/BUB 21.1 3.9E+02 0.0086 20.6 9.0 43 125-167 81-124 (126)
466 PF04124 Dor1: Dor1-like famil 20.9 5.1E+02 0.011 24.0 8.0 22 112-133 111-132 (338)
467 PRK02287 hypothetical protein; 20.8 2.5E+02 0.0054 23.2 5.0 58 211-268 108-167 (171)
468 cd08819 CARD_MDA5_2 Caspase ac 20.8 3.4E+02 0.0073 19.6 7.3 14 192-205 50-63 (88)
469 cd07229 Pat_TGL3_like Triacylg 20.6 7.5E+02 0.016 23.6 8.9 55 173-227 181-254 (391)
470 cd08789 CARD_IPS-1_RIG-I Caspa 20.4 1.8E+02 0.0039 20.7 3.7 32 90-122 46-77 (84)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.7e-97 Score=751.51 Aligned_cols=410 Identities=40% Similarity=0.705 Sum_probs=403.8
Q ss_pred CCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHH
Q 040371 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSA 80 (410)
Q Consensus 1 ~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 80 (410)
|+.||+++||+||.+|+++|++++|+++|++|.+.|+.||..||++++++|++.|+++.|.++|+.|.+.|++||..++|
T Consensus 285 m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~ 364 (697)
T PLN03081 285 MPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364 (697)
T ss_pred CCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 040371 81 ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE 160 (410)
Q Consensus 81 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 160 (410)
+||++|+|+|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||++++.+|++.|.+++
T Consensus 365 ~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~ 444 (697)
T PLN03081 365 ALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ 444 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHH---HHhhc
Q 040371 161 GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237 (410)
Q Consensus 161 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~---~~~~~ 237 (410)
|.++|+.|.+++|+.|+..+|++||++|+++|++++|.+++++|++.|+..+|++||.+|+.+|+++.|+.+ +.++.
T Consensus 445 a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~ 524 (697)
T PLN03081 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG 524 (697)
T ss_pred HHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC
Confidence 999999999878999999999999999999999999999999999999999999999999999999999998 55677
Q ss_pred cCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHC
Q 040371 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSE 317 (410)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~ 317 (410)
|.+..+|..|+++|++.|+|++|.+++++|+++|+++.|++||+++++.+|.|++|+..|++.+++++.++++..+|++.
T Consensus 525 p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~ 604 (697)
T PLN03081 525 PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEY 604 (697)
T ss_pred CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCccccccCChHHHhhhhhhhhHHHHHHHHhcCCCCCCcEEEEcccccccchhhHHHHHhhhhCceEEEecCCccc
Q 040371 318 GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFH 397 (410)
Q Consensus 318 g~~pd~~~~~~~~~~~~~~~~l~~~~e~la~~~~~~~~~~~~~~~~~~n~~~c~~~~~~~~~~~~~~~~~i~~~~~~~~h 397 (410)
||.||+.++++++++++|+..+.+|||+||+||||+++|+++||||+||||+|+|||+++|+||++.+|+|||||.+|||
T Consensus 605 gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh 684 (697)
T PLN03081 605 GYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFH 684 (697)
T ss_pred CCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccCCCCCC
Q 040371 398 RFEGGLCSCGDYW 410 (410)
Q Consensus 398 ~~~~g~~sc~~~~ 410 (410)
||++|+|||+|||
T Consensus 685 ~f~~g~csc~d~w 697 (697)
T PLN03081 685 HFKLGKCSCGDYW 697 (697)
T ss_pred cCCCCcccccccC
Confidence 9999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.9e-91 Score=720.11 Aligned_cols=405 Identities=41% Similarity=0.789 Sum_probs=396.1
Q ss_pred CCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHH
Q 040371 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSA 80 (410)
Q Consensus 1 ~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 80 (410)
|++||+++||+||.+|.++|+.++|+++|++|.. +++||..||++++.+|++.|+++.+.++|..+.+.|+.+|..++|
T Consensus 450 m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~n 528 (857)
T PLN03077 450 IPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN 528 (857)
T ss_pred CCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceech
Confidence 6789999999999999999999999999999986 599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 040371 81 ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE 160 (410)
Q Consensus 81 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 160 (410)
+||++|+|+|++++|.++|+++ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+++|.+|++.|++++
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~e 607 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHH---HHhhc
Q 040371 161 GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237 (410)
Q Consensus 161 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~---~~~~~ 237 (410)
|.++|+.|.+++|+.|+..+|++|+++|+++|++++|.+++++|+++||..+|++|+.+|..+|+.+.|+.+ +.+++
T Consensus 608 a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~ 687 (857)
T PLN03077 608 GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELD 687 (857)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Confidence 999999999778999999999999999999999999999999999999999999999999999999999888 67889
Q ss_pred cCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHC
Q 040371 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSE 317 (410)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~ 317 (410)
|.+...|..|.++|++.|+|++|.++++.|+++|++++||+||+++++.+|.|.+++.+||+.++|++.++++..+|++.
T Consensus 688 p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~ 767 (857)
T PLN03077 688 PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKAS 767 (857)
T ss_pred CCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCccccccCChHHHhhhhhhhhHHHHHHHHhcCCCCCCcEEEEcccccccchhhHHHHHhhhhCceEEEecCCccc
Q 040371 318 GFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRDRIRFH 397 (410)
Q Consensus 318 g~~pd~~~~~~~~~~~~~~~~l~~~~e~la~~~~~~~~~~~~~~~~~~n~~~c~~~~~~~~~~~~~~~~~i~~~~~~~~h 397 (410)
||.||+..++ ++++++|+..+.+|||+||+||||+++|+++||||+||||+|+|||+++|+||++.+|+|||||.+|||
T Consensus 768 g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh 846 (857)
T PLN03077 768 GLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFH 846 (857)
T ss_pred CcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcce
Confidence 9999999877 557788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccCCCC
Q 040371 398 RFEGGLCSCGD 408 (410)
Q Consensus 398 ~~~~g~~sc~~ 408 (410)
||++|+|||+|
T Consensus 847 ~f~~g~csc~d 857 (857)
T PLN03077 847 HFKDGECSCGD 857 (857)
T ss_pred eCCCCcccCCC
Confidence 99999999998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.6e-54 Score=443.87 Aligned_cols=388 Identities=21% Similarity=0.327 Sum_probs=330.9
Q ss_pred CCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHH
Q 040371 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSA 80 (410)
Q Consensus 1 ~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 80 (410)
|++||+++||+||.+|+++|++++|+++|++|...|+.||..||++++.+|++.|+++.|.++|..|.+.|+.||..+||
T Consensus 248 m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n 327 (857)
T PLN03077 248 MPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327 (857)
T ss_pred CCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 040371 81 ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE 160 (410)
Q Consensus 81 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 160 (410)
+|+++|+++|++++|.++|++|..||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++
T Consensus 328 ~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 407 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407 (857)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHhhc---
Q 040371 161 GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNIS--- 237 (410)
Q Consensus 161 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~--- 237 (410)
|.++++.|.+. |+.|+..+|++||++|+++|++++|.++|++|. +||..+|+++|.+|.+.|+.++|..++.++.
T Consensus 408 a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~ 485 (857)
T PLN03077 408 GVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL 485 (857)
T ss_pred HHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 99999999975 999999999999999999999999999999995 5788999999999999999999988854443
Q ss_pred cCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCCc-----------------------------eeEEEECCEEE
Q 040371 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQG-----------------------------KSWLELAGVIH 288 (410)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-----------------------------~s~~~~~~~~~ 288 (410)
++|..+|..++.+|++.|.++.+.+++..|.+.|+.++.. .+|.
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n------- 558 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWN------- 558 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHH-------
Confidence 4555666666655555555555555555555555543321 2342
Q ss_pred EEEeCCCCCccHHHHHHHHHHHHHHHHHCCcccCCccccccCChHHHhhhh---hhhhHHHHHHHHhcCCCCCCcEEEEc
Q 040371 289 QFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNL---YHHSEKLALAYGILKTSPGTEIRISK 365 (410)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~l---~~~~e~la~~~~~~~~~~~~~~~~~~ 365 (410)
.++.++..+|+.++|.++|+ +|.+.|+.||..++...+..+.+.+.+ ...++.+...+|+.++..... ++++
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~----~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~-~lv~ 633 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFN----RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA-CVVD 633 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHH----HHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH-HHHH
Confidence 26788889999999999988 889999999999998888888766654 334556655677766655544 5788
Q ss_pred ccccccchhhHHHHHhhhhCc------eEEEecCCccccccCC
Q 040371 366 NLRICHDCHSWIKMISRLLRR------VIIVRDRIRFHRFEGG 402 (410)
Q Consensus 366 n~~~c~~~~~~~~~~~~~~~~------~i~~~~~~~~h~~~~g 402 (410)
.+.++|+.++|.++|.+|+.+ ..++..|+.+.+.+.|
T Consensus 634 ~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred HHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Confidence 899999999999999999643 2334445444444433
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.9e-52 Score=420.61 Aligned_cols=386 Identities=20% Similarity=0.304 Sum_probs=333.8
Q ss_pred CCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHH
Q 040371 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSA 80 (410)
Q Consensus 1 ~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 80 (410)
|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++|..+.+.|+.||..++|
T Consensus 184 m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n 263 (697)
T PLN03081 184 MPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC 263 (697)
T ss_pred CCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 040371 81 ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE 160 (410)
Q Consensus 81 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 160 (410)
+||++|+++|++++|.++|++|+.+|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||++++.+|++.|.+++
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~ 343 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEH 343 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHhhc---
Q 040371 161 GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNIS--- 237 (410)
Q Consensus 161 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~--- 237 (410)
|.+++..|.+. |+.||..+|++||++|+++|++++|.++|++|. +||..+|++||.+|+++|+.++|.+++.++.
T Consensus 344 a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g 421 (697)
T PLN03081 344 AKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421 (697)
T ss_pred HHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999975 999999999999999999999999999999995 6899999999999999999999999966543
Q ss_pred -cCCCchHHHHHHHHHhcCChhHHHHHHHHHHh-CCCcCCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHH
Q 040371 238 -RLMGGDYVLLSNMYCYLKRWDTAENVREIMKK-KGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTK 315 (410)
Q Consensus 238 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 315 (410)
.+|..+|..++.+|++.|++++|.++|+.|.+ .|+.|+.... ..++.++...|+.++|+++++
T Consensus 422 ~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y--------~~li~~l~r~G~~~eA~~~~~------- 486 (697)
T PLN03081 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY--------ACMIELLGREGLLDEAYAMIR------- 486 (697)
T ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch--------HhHHHHHHhcCCHHHHHHHHH-------
Confidence 56778999999999999999999999999976 5888765322 225677888999999998876
Q ss_pred HCCcccCCccccccCChHHHhhhhhhhhHHHHHHHHhcCCCCCCcEEEEcccccccchhhHHHHHhhhhCceEEEec---
Q 040371 316 SEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEIRISKNLRICHDCHSWIKMISRLLRRVIIVRD--- 392 (410)
Q Consensus 316 ~~g~~pd~~~~~~~~~~~~~~~~l~~~~e~la~~~~~~~~~~~~~~~~~~n~~~c~~~~~~~~~~~~~~~~~i~~~~--- 392 (410)
+.++.||..++...+..+.+.+.+..-.+-....+++.+.....-+.+++-+..+|+..+|.+++.+|..+.+-...
T Consensus 487 ~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s 566 (697)
T PLN03081 487 RAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACT 566 (697)
T ss_pred HCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCee
Confidence 35788998877666666655554322111111223443333333345666789999999999999999888653221
Q ss_pred ----CCccccccCCc
Q 040371 393 ----RIRFHRFEGGL 403 (410)
Q Consensus 393 ----~~~~h~~~~g~ 403 (410)
.+..|.|-.|-
T Consensus 567 ~i~~~~~~~~f~~~d 581 (697)
T PLN03081 567 WIEVKKQDHSFFSGD 581 (697)
T ss_pred EEEECCeEEEEccCC
Confidence 23456665553
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.4e-49 Score=402.79 Aligned_cols=324 Identities=20% Similarity=0.310 Sum_probs=297.2
Q ss_pred CCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHH
Q 040371 1 MPDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSA 80 (410)
Q Consensus 1 ~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 80 (410)
|+.||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|+++.|.++|+.|.+.|+.||..+|+
T Consensus 432 M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyn 511 (1060)
T PLN03218 432 IRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG 511 (1060)
T ss_pred cCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcc----cCChhhHHHHHHHHHHcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHc
Q 040371 81 ALIDMYSKCGKIQMAKEVFDTVQ----RNDVSVWNAMISGVAIHGLAADASAIFTKMEM--FNVLPDSITFLGLLTACSH 154 (410)
Q Consensus 81 ~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~a~~~ 154 (410)
+||++|++.|++++|.++|++|. .||..+||+||.+|++.|++++|.++|++|.. .|+.||.+||++++.+|++
T Consensus 512 aLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999996 47999999999999999999999999999986 5789999999999999999
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCchhHHHH
Q 040371 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM---TMEPDVVVWRALLSACRTFKRLELGEV 231 (410)
Q Consensus 155 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~~g~~~~a~~ 231 (410)
.|++++|.++|+.|.+. |+.|+..+|+.+|.+|++.|++++|.++|++| ++.||..+|+++|.+|++.|++++|.+
T Consensus 592 ~G~ldeA~elf~~M~e~-gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEY-NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred CCCHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999975 99999999999999999999999999999999 688999999999999999999999999
Q ss_pred HHHhhc----cCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCccHHHHHHHH
Q 040371 232 AIVNIS----RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKIL 307 (410)
Q Consensus 232 ~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l 307 (410)
++.++. +++..+|+.|+.+|++.|++++|.++|++|.+.|+.|+. .+|. .++.++...|+.++|.++|
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv-vtyN-------~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV-STMN-------ALITALCEGNQLPKALEVL 742 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-HHHH-------HHHHHHHHCCCHHHHHHHH
Confidence 955443 466789999999999999999999999999999998875 3342 2678889999999999998
Q ss_pred HHHHHHHHHCCcccCCccccccCChHHHhh
Q 040371 308 GSLIQRTKSEGFLPATELVLMDVSEEEKEG 337 (410)
Q Consensus 308 ~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~ 337 (410)
+ +|++.|+.||..++...+..+.+.+
T Consensus 743 ~----eM~~~Gi~Pd~~Ty~sLL~a~~k~G 768 (1060)
T PLN03218 743 S----EMKRLGLCPNTITYSILLVASERKD 768 (1060)
T ss_pred H----HHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 8 7888999999988766666555443
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.7e-49 Score=402.67 Aligned_cols=378 Identities=18% Similarity=0.235 Sum_probs=305.8
Q ss_pred CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHH--cCCCccHHHHH
Q 040371 3 DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIE--KKIELNFILSA 80 (410)
Q Consensus 3 ~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~ 80 (410)
.||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.||..+|+
T Consensus 504 ~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTyn 583 (1060)
T PLN03218 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVG 583 (1060)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHH
Confidence 5889999999999999999999999999999999999999999999999999999999999999976 57889999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 040371 81 ALIDMYSKCGKIQMAKEVFDTVQR----NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156 (410)
Q Consensus 81 ~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 156 (410)
+||++|+++|++++|.++|++|.+ |+..+||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|
T Consensus 584 aLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G 663 (1060)
T PLN03218 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 999999999999999999999975 4668999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCchhHHHHHH
Q 040371 157 LVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM---TMEPDVVVWRALLSACRTFKRLELGEVAI 233 (410)
Q Consensus 157 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 233 (410)
++++|.++|+.|.+. |+.|+..+|++||++|+++|++++|.++|++| ++.||..+|++||.+|++.|++++|.+++
T Consensus 664 ~~eeA~~l~~eM~k~-G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 664 DLDKAFEILQDARKQ-GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999965 99999999999999999999999999999998 67899999999999999999999999996
Q ss_pred Hhhc----cCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCCceeEEEECC-------------EEEEEEeCC--
Q 040371 234 VNIS----RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAG-------------VIHQFKAGD-- 294 (410)
Q Consensus 234 ~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~-------------~~~~~~~~~-- 294 (410)
.++. .++..+|..|+.+|++.|++++|.++|++|.+.|+.|+..+....++- .+-.|-.+.
T Consensus 743 ~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~ 822 (1060)
T PLN03218 743 SEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQ 822 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence 6543 456788999999999999999999999999999998886433221110 000011111
Q ss_pred CCCccHHHHHHHHHHHHHHHHHCCcccCCccccccCChHHHhhhhhhhhHHHHHHHHhcCCCCCCcE--EEEcccccccc
Q 040371 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTSPGTEI--RISKNLRICHD 372 (410)
Q Consensus 295 ~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~l~~~~e~la~~~~~~~~~~~~~~--~~~~n~~~c~~ 372 (410)
......++|+.+|+ +|.+.|+.||..++...+ .|.....-...+..+-..+++.+.+++... .+++++ +.
T Consensus 823 ~~n~w~~~Al~lf~----eM~~~Gi~Pd~~T~~~vL-~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~ 894 (1060)
T PLN03218 823 IENKWTSWALMVYR----ETISAGTLPTMEVLSQVL-GCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GE 894 (1060)
T ss_pred cccchHHHHHHHHH----HHHHCCCCCCHHHHHHHH-HHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---cc
Confidence 11234566777776 999999999998887666 343222223345566666777776665332 244443 22
Q ss_pred -hhhHHHHHhhhhCceEE
Q 040371 373 -CHSWIKMISRLLRRVII 389 (410)
Q Consensus 373 -~~~~~~~~~~~~~~~i~ 389 (410)
-.+|..++.+|..+.|+
T Consensus 895 ~~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 895 YDPRAFSLLEEAASLGVV 912 (1060)
T ss_pred ChHHHHHHHHHHHHcCCC
Confidence 25799999998877544
No 7
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.96 E-value=3.4e-29 Score=191.38 Aligned_cols=106 Identities=58% Similarity=0.995 Sum_probs=94.4
Q ss_pred ceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHCCcccCCccccccCChHHH--------hhhhhhhhHHHHH
Q 040371 277 GKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEK--------EGNLYHHSEKLAL 348 (410)
Q Consensus 277 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~l~~~~e~la~ 348 (410)
+++|.++ |.|++|+.+||+. ++..++...|+.|+...+.++++++++ ...+.+|||+||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 5789765 8999999999998 333467789999999998888777655 5688999999999
Q ss_pred HHHhcCCCCCCcEEEEccc-ccccchhhHHHHHhhhhCceEEEecCCcccccc
Q 040371 349 AYGILKTSPGTEIRISKNL-RICHDCHSWIKMISRLLRRVIIVRDRIRFHRFE 400 (410)
Q Consensus 349 ~~~~~~~~~~~~~~~~~n~-~~c~~~~~~~~~~~~~~~~~i~~~~~~~~h~~~ 400 (410)
|||++++ +++||+ |+|+|||+++|+||++++|+|+|||.+|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 889999 999999999999999999999999999999996
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=5.6e-19 Score=168.25 Aligned_cols=297 Identities=13% Similarity=0.059 Sum_probs=234.2
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHh
Q 040371 12 MIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELN---FILSAALIDMYSK 88 (410)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~ 88 (410)
....+...|++++|+..|+++.+.+ +.+..++..+...+...|+++.|..+++.+++.+..++ ..++..+...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999863 34566899999999999999999999999988643222 3578899999999
Q ss_pred cCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHH
Q 040371 89 CGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDS----ITFLGLLTACSHCGLVEEG 161 (410)
Q Consensus 89 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a 161 (410)
.|++++|..+|+++.+ .+..+++.++..|.+.|++++|++.|+++...+..++. ..+..+...+.+.|++++|
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999975 46779999999999999999999999999886543322 2345677788899999999
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCchhHHHHHHH---h
Q 040371 162 RKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPD--VVVWRALLSACRTFKRLELGEVAIV---N 235 (410)
Q Consensus 162 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~---~ 235 (410)
..+|+++.+. .+.+...+..+...|.+.|++++|.++|+++ ...|+ ..++..+..++...|++++|...+. +
T Consensus 200 ~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 200 RALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999853 2334667888999999999999999999998 33454 3568889999999999999999943 3
Q ss_pred hccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeC---CCCCccHHHHHHHHHHHHH
Q 040371 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAG---DRSHPEAQAIDKILGSLIQ 312 (410)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~~ 312 (410)
..|.. ..+..++..|.+.|++++|..+++++.+.. |+.. .+.. ++.. ...+|+..+++..++
T Consensus 278 ~~p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--P~~~-~~~~-------l~~~~~~~~~~g~~~~a~~~~~---- 342 (389)
T PRK11788 278 EYPGA-DLLLALAQLLEEQEGPEAAQALLREQLRRH--PSLR-GFHR-------LLDYHLAEAEEGRAKESLLLLR---- 342 (389)
T ss_pred hCCCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--cCHH-HHHH-------HHHHhhhccCCccchhHHHHHH----
Confidence 44543 456889999999999999999999887652 3321 1110 1111 123678889998888
Q ss_pred HHHHCCcccCCccc
Q 040371 313 RTKSEGFLPATELV 326 (410)
Q Consensus 313 ~m~~~g~~pd~~~~ 326 (410)
+|.+.++.||..++
T Consensus 343 ~~~~~~~~~~p~~~ 356 (389)
T PRK11788 343 DLVGEQLKRKPRYR 356 (389)
T ss_pred HHHHHHHhCCCCEE
Confidence 67777888888764
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=2.4e-18 Score=163.96 Aligned_cols=269 Identities=12% Similarity=0.067 Sum_probs=220.6
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPD---KFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAA 81 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 81 (410)
+..+|..+...|.+.|++++|+.+++.+...+..++ ..++..+...+...|+++.|..++..+.+.. +.+..+++.
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~ 146 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQ 146 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHH
Confidence 456899999999999999999999999987542222 2567888999999999999999999998863 457889999
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCC--------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040371 82 LIDMYSKCGKIQMAKEVFDTVQRND--------VSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153 (410)
Q Consensus 82 li~~y~~~g~~~~A~~~f~~m~~~~--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 153 (410)
++.+|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|...|+++.+.. +.+...+..+...+.
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 225 (389)
T PRK11788 147 LLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLAL 225 (389)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHH
Confidence 9999999999999999999986432 1245667788899999999999999998753 224557778889999
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHH
Q 040371 154 HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDVVVWRALLSACRTFKRLELGEVA 232 (410)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~ 232 (410)
+.|++++|.++|+.+.+. +-.....+++.++.+|.+.|++++|...++++ ...|+...+..+...+...|++++|..+
T Consensus 226 ~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~ 304 (389)
T PRK11788 226 AQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQAL 304 (389)
T ss_pred HCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999999999854 21222467889999999999999999999998 5568877778899999999999999999
Q ss_pred HH---hhccCCCchHHHHHHHHHh---cCChhHHHHHHHHHHhCCCcCCCc
Q 040371 233 IV---NISRLMGGDYVLLSNMYCY---LKRWDTAENVREIMKKKGVRKSQG 277 (410)
Q Consensus 233 ~~---~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~ 277 (410)
+. +..|.+ ..+..++..+.. .|+.+++..++++|.+++++++|.
T Consensus 305 l~~~l~~~P~~-~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 305 LREQLRRHPSL-RGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHhCcCH-HHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 43 334444 356666666654 568999999999999999999885
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.80 E-value=6.9e-17 Score=169.74 Aligned_cols=289 Identities=12% Similarity=0.039 Sum_probs=178.4
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM 85 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 85 (410)
...|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|..+++.+.+.. +.+...+..+...
T Consensus 601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 678 (899)
T TIGR02917 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQL 678 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4455555555555555555555555555432 2234445555555555555555555555555442 3345555555555
Q ss_pred HHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 040371 86 YSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR 162 (410)
Q Consensus 86 y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 162 (410)
+.+.|++++|.++++.+.+ .+...|..+...|.+.|++++|++.|+++... .|+..++..+..++.+.|+.++|.
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAV 756 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHH
Confidence 5556666666655555542 23445566666666666677777776666654 344455566666777777777777
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHH---HHhhc
Q 040371 163 KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGEVA---IVNIS 237 (410)
Q Consensus 163 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~---~~~~~ 237 (410)
+.++.+.+. .+.+...+..+...|.+.|++++|...|+++ ...| +...+..+...+...|+ ++|... .....
T Consensus 757 ~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 757 KTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 777776642 3345667777777777788888888777776 2333 56677777777777777 667776 34456
Q ss_pred cCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHH
Q 040371 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSL 310 (410)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 310 (410)
|.++..+..+..+|...|++++|.+.++++.+.+.. ++.+... +...+...|+.++|.+.++++
T Consensus 834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~--------l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYH--------LALALLATGRKAEARKELDKL 897 (899)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHH--------HHHHHHHcCCHHHHHHHHHHH
Confidence 777777777888888888888888888888876532 2211111 223345567788888877743
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.79 E-value=7.1e-17 Score=169.66 Aligned_cols=262 Identities=13% Similarity=0.031 Sum_probs=173.3
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 84 (410)
+..+|+.+...|.+.|++++|...|+++...+ +.+...+..+...+...|+++.|.++++.+.+.. +.+..+|..+..
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 609 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGR 609 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 34455556666666666666666666655432 3344455566666666666666666666665543 445666667777
Q ss_pred HHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 040371 85 MYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG 161 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 161 (410)
.|.+.|++++|...|+++.+ .+...|..+...|.+.|++++|...|+++.... +.+..++..+...+...|++++|
T Consensus 610 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 688 (899)
T TIGR02917 610 AQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESA 688 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777766542 244566666677777777777777777666532 22456666667777777777777
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHH---HHhhc
Q 040371 162 RKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDVVVWRALLSACRTFKRLELGEVA---IVNIS 237 (410)
Q Consensus 162 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~---~~~~~ 237 (410)
.++++.+.+. .+++...+..+...|.+.|++++|.+.|+++ ...|+..++..+...+...|++++|... ..+..
T Consensus 689 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 766 (899)
T TIGR02917 689 KKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH 766 (899)
T ss_pred HHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 7777777643 2345566777777777778888887777776 4456666777777777888888888777 44456
Q ss_pred cCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 040371 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKG 271 (410)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 271 (410)
|.+...+..+...|.+.|++++|.+.|+++.+..
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 6677777778888888888888888888877654
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.71 E-value=1.9e-14 Score=144.86 Aligned_cols=259 Identities=8% Similarity=-0.090 Sum_probs=194.4
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMY 86 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 86 (410)
..+..++.+....|++++|++.|+++.... +.+...+..+..++...|+++.|...++.+++.. +.+...+..+...|
T Consensus 77 ~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l 154 (656)
T PRK15174 77 DLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTL 154 (656)
T ss_pred hHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345556677777899999999999888752 3355677778888888899999999998888763 44677888888889
Q ss_pred HhcCCHHHHHHHHHhcc--cC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 040371 87 SKCGKIQMAKEVFDTVQ--RN-DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163 (410)
Q Consensus 87 ~~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 163 (410)
...|++++|...++.+. .| +...+..+ ..+.+.|++++|...++++......++......+..++...|++++|..
T Consensus 155 ~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~ 233 (656)
T PRK15174 155 VLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQ 233 (656)
T ss_pred HHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHH
Confidence 99999999988888764 23 33334333 3477788999999988888765433444555555677788888999998
Q ss_pred HHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH----HHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHH---HH
Q 040371 164 YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE----AYGLITSM-TMEPD-VVVWRALLSACRTFKRLELGEVA---IV 234 (410)
Q Consensus 164 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~---~~ 234 (410)
.|+.+.+. -+.+...+..+...|.+.|++++ |...|++. ...|+ ...+..+...+...|++++|... ..
T Consensus 234 ~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 234 TGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888753 23346677788888888888885 67788776 45564 56777888888888888888887 55
Q ss_pred hhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040371 235 NISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 270 (410)
...|.++..+..+..+|.+.|++++|...++.+.+.
T Consensus 312 ~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 312 ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 667777777788888888888888888888887764
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.64 E-value=1.9e-13 Score=137.63 Aligned_cols=256 Identities=9% Similarity=-0.036 Sum_probs=206.5
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 040371 10 NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKC 89 (410)
Q Consensus 10 n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 89 (410)
-.++..+.+.|++++|+.+++..+..... +...+..++.+....|+++.|.+.++.+.+.. +.+...+..+...+.+.
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 34677888999999999999999876433 44556666677778999999999999999874 45678889999999999
Q ss_pred CCHHHHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 040371 90 GKIQMAKEVFDTVQR--N-DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD 166 (410)
Q Consensus 90 g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 166 (410)
|++++|...|++... | +...|..+...+...|+.++|...++++......+ ...+.. +..+...|++++|...++
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~-~~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIAT-CLSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHH-HHHHHHcCCHHHHHHHHH
Confidence 999999999998864 3 56789999999999999999999999887653222 223323 345788999999999999
Q ss_pred HhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhH----HHHH---HHhhc
Q 040371 167 HMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLEL----GEVA---IVNIS 237 (410)
Q Consensus 167 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~----a~~~---~~~~~ 237 (410)
.+.+. .-.++...+..+...+.+.|++++|...+++. ...| +...+..+-..+...|++++ |... ..+..
T Consensus 202 ~~l~~-~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPF-FALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhc-CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 98753 22233445566678899999999999999987 4455 46778888888999999986 5555 56677
Q ss_pred cCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040371 238 RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 270 (410)
|.+...+..+..++.+.|++++|...+++..+.
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888889999999999999999999999998875
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.59 E-value=5.1e-12 Score=127.35 Aligned_cols=255 Identities=13% Similarity=0.076 Sum_probs=177.9
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 040371 9 WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSK 88 (410)
Q Consensus 9 ~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 88 (410)
+...-..|.+.|++++|+..|++.+. +.|+...|..+..++.+.|+++.|.+.+...++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34455566666666666666666654 34566666666666666666666666666666543 2344555555556666
Q ss_pred cCCHHHHH------------------------------------------------------------------------
Q 040371 89 CGKIQMAK------------------------------------------------------------------------ 96 (410)
Q Consensus 89 ~g~~~~A~------------------------------------------------------------------------ 96 (410)
.|++++|.
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 66655554
Q ss_pred ----------------------------HHHHhccc-----C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-
Q 040371 97 ----------------------------EVFDTVQR-----N-DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD- 141 (410)
Q Consensus 97 ----------------------------~~f~~m~~-----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~- 141 (410)
+.|++..+ | +...|+.+...+...|++++|+..|++..+. .|+
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~ 364 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRV 364 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCc
Confidence 33333221 1 2234566666667778888888888887763 454
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 040371 142 SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPD-VVVWRALLSA 219 (410)
Q Consensus 142 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~ 219 (410)
...|..+...+...|++++|...|+.+.+. -+.+...|..+...|...|++++|...|++. ...|+ ...|..+...
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHH
Confidence 456777777788888899999888887743 2334678888888899999999999888887 55564 5667777778
Q ss_pred HHhcCchhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040371 220 CRTFKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 220 ~~~~g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 270 (410)
+...|++++|... ..+..|.++..+..+..+|...|++++|.+.|++..+.
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 8899999999988 44567888888899999999999999999999887664
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.58 E-value=3.2e-12 Score=128.82 Aligned_cols=246 Identities=15% Similarity=0.056 Sum_probs=199.0
Q ss_pred CCHhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 040371 20 ARFDEALRFFREMLSSK-VEP-DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE 97 (410)
Q Consensus 20 g~~~~a~~l~~~m~~~g-~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 97 (410)
+++++|++.|++....+ ..| +...|..+...+...|++++|...++..++.. +.+...|..+...|...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 67899999999998764 334 44577888888889999999999999998864 3346788899999999999999999
Q ss_pred HHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC
Q 040371 98 VFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173 (410)
Q Consensus 98 ~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 173 (410)
.|++..+ .+...|..+...|...|++++|+..|++.... .| +...+..+...+.+.|++++|...|+...+.
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-- 462 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-- 462 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 9998753 35778999999999999999999999999875 44 4566777888999999999999999998853
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHhcCchhHHHHH---HHhhccCCC
Q 040371 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDV-V-------VWRALLSACRTFKRLELGEVA---IVNISRLMG 241 (410)
Q Consensus 174 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~-------~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~ 241 (410)
.+.+...|+.+...|...|++++|.+.|++. ...|+. . .++..+..+...|++++|..+ ..+..|.+.
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~ 542 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD 542 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 3335778999999999999999999999985 444421 1 122222233446999999998 345677777
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040371 242 GDYVLLSNMYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 242 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 270 (410)
..+..+..+|.+.|++++|.+.|++..+.
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77889999999999999999999987654
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.56 E-value=1.8e-13 Score=127.88 Aligned_cols=253 Identities=12% Similarity=0.149 Sum_probs=165.8
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHH-HHHHHHH
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFREMLSSKVEP-DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFI-LSAALID 84 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~ 84 (410)
.+|..+...+-..|++++|+.+++.|.+. +| ....|..+..++...|+.+.|.+.|...++. .|+.. +.+.+..
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 47888999999999999999999999985 55 5668999999999999999999999988885 45443 3445555
Q ss_pred HHHhcCCHHHHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCH--
Q 040371 85 MYSKCGKIQMAKEVFDTVQR--N-DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD-SITFLGLLTACSHCGLV-- 158 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~-- 158 (410)
.....|++++|...+.+..+ | -.+.|+.|...+-..|+..+|++.|++... +.|+ ...|..|...|...+.+
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchH
Confidence 66668888888888876653 3 246888888888888888888888888765 4454 34455555555554444
Q ss_pred --------------------------------HHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 040371 159 --------------------------------EEGRKYFDHMRSRYSIQPQ-LEHYGAMVDLLGRAGHIEEAYGLITSM- 204 (410)
Q Consensus 159 --------------------------------~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m- 204 (410)
|.|+..+++..+ +.|+ ...|+.|..++-..|++.+|.+.+.+.
T Consensus 271 Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 271 AVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE---LQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHh---cCCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 444444444442 2333 345555555555555555555555544
Q ss_pred CCCCC-HHHHHHHHHHHHhcCchhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040371 205 TMEPD-VVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMK 268 (410)
Q Consensus 205 ~~~p~-~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 268 (410)
...|+ ....+.|-..+...|.+++|.++ ..+..|.-...++.|...|-+.|++++|...+++..
T Consensus 348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 23332 33445555555555555555555 233344444455555555666666666655555543
No 17
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.52 E-value=3.1e-14 Score=129.13 Aligned_cols=253 Identities=15% Similarity=0.112 Sum_probs=107.3
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 040371 11 SMIGGFVRNARFDEALRFFREMLSSKVEPDKF-TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKC 89 (410)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 89 (410)
.+...+.+.|++++|++++++-.....+|+.. -|..+...+...++.+.|.+.++++.+.+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 45677889999999999996654443245444 4444555667789999999999999987633 67778888888 789
Q ss_pred CCHHHHHHHHHhcc--cCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 040371 90 GKIQMAKEVFDTVQ--RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFN-VLPDSITFLGLLTACSHCGLVEEGRKYFD 166 (410)
Q Consensus 90 g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 166 (410)
+++++|.++++..- .++...+..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999988764 3466778889999999999999999999987543 34567778888889999999999999999
Q ss_pred HhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCchhHHHHH---HHhhccCC
Q 040371 167 HMRSRYSIQP-QLEHYGAMVDLLGRAGHIEEAYGLITSMT--MEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240 (410)
Q Consensus 167 ~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~ 240 (410)
...+. .| +....+.++..+...|+.+++.++++... ...|...|..+..++...|+.++|... ..+..|.|
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 99864 55 47788999999999999999888777661 234566788999999999999999999 55667888
Q ss_pred CchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040371 241 GGDYVLLSNMYCYLKRWDTAENVREIMK 268 (410)
Q Consensus 241 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 268 (410)
+.....+.+++...|+.++|.+++++..
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 8899999999999999999999987654
No 18
>PF13041 PPR_2: PPR repeat family
Probab=99.52 E-value=3.4e-14 Score=92.24 Aligned_cols=50 Identities=36% Similarity=0.833 Sum_probs=48.5
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040371 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCAR 53 (410)
Q Consensus 4 ~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 53 (410)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999874
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.51 E-value=1.6e-11 Score=131.87 Aligned_cols=226 Identities=12% Similarity=0.062 Sum_probs=145.6
Q ss_pred HHHHhcCCHHHHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHH-------------
Q 040371 84 DMYSKCGKIQMAKEVFDTVQR--N-DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP-DSITFL------------- 146 (410)
Q Consensus 84 ~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~------------- 146 (410)
..+...|++++|++.|++..+ | +...+..+...|.+.|++++|...|++..+. .| +...+.
T Consensus 469 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~ 546 (1157)
T PRK11447 469 EALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDR 546 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHH
Confidence 344456677777777766543 2 3345556666666677777777777666543 22 222221
Q ss_pred -------------------------------HHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHH
Q 040371 147 -------------------------------GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIE 195 (410)
Q Consensus 147 -------------------------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 195 (410)
.+...+...|+.++|..+++. .+++...+..+...|.+.|+++
T Consensus 547 ~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~ 620 (1157)
T PRK11447 547 AALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYA 620 (1157)
T ss_pred HHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHH
Confidence 223344455555666555541 1334566778888999999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHH---HhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040371 196 EAYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGEVAI---VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 196 ~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 270 (410)
+|++.|++. ...| +...+..+...+...|++++|+..+ .+..|.++..+..+..++...|++++|.++++.+...
T Consensus 621 ~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 621 AARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 999999987 4556 5778889999999999999999983 4445666677778889999999999999999998765
Q ss_pred CCcCCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHCCcccCC
Q 040371 271 GVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPAT 323 (410)
Q Consensus 271 g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~ 323 (410)
.-...+......+- ......+...|+.++|...+++. |...|+.|+.
T Consensus 701 ~~~~~~~~~~a~~~---~~~a~~~~~~G~~~~A~~~y~~A---l~~~~~~~~~ 747 (1157)
T PRK11447 701 AKSQPPSMESALVL---RDAARFEAQTGQPQQALETYKDA---MVASGITPTR 747 (1157)
T ss_pred CccCCcchhhHHHH---HHHHHHHHHcCCHHHHHHHHHHH---HhhcCCCCCC
Confidence 32211111010000 00112235678999999998864 4455776643
No 20
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.51 E-value=4.8e-13 Score=129.59 Aligned_cols=270 Identities=15% Similarity=0.130 Sum_probs=200.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCC
Q 040371 27 RFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRND 106 (410)
Q Consensus 27 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~ 106 (410)
.++-.|...|+.||.+||.+++.-|+..|+.+.|- +|..|.-..++.+..++++++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45677888999999999999999999999999998 9999998888999999999999999999988875 788
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 040371 107 VSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186 (410)
Q Consensus 107 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 186 (410)
..+|+.+..+|.++|+... |+...+ -.-.+...++..|.-..-..++..+.-..+.-||. ...+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHH
Confidence 8899999999999999865 333332 22334556666776666666665543223444554 34566
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCc-hhHHHHHHHhhc-cCCCchHHHHHHHHHhcCChhHHHHHH
Q 040371 187 LLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKR-LELGEVAIVNIS-RLMGGDYVLLSNMYCYLKRWDTAENVR 264 (410)
Q Consensus 187 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~ 264 (410)
...-.|.++.++++...+|...-..++..+|.-+..... +++-......+. ..++.+|..++..-..+|+.+.|..++
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 677788899999999888644322233234655554433 333333322222 467789999999999999999999999
Q ss_pred HHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHCCcccCCccccccCChHH
Q 040371 265 EIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEE 334 (410)
Q Consensus 265 ~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~ 334 (410)
.+|+++|++-.+...|.++ .| .++...++.+.+-|++.|+.|+..+...-+.++-
T Consensus 228 ~emke~gfpir~HyFwpLl--------~g-------~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l 282 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLL--------LG-------INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQL 282 (1088)
T ss_pred HHHHHcCCCcccccchhhh--------hc-------CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhh
Confidence 9999999999998888753 33 2233455666679999999999988755444443
No 21
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.49 E-value=2.3e-12 Score=120.65 Aligned_cols=256 Identities=11% Similarity=0.170 Sum_probs=209.4
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPD-KFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 84 (410)
.+.|+.|-..+-.+|+...|+.-|++... +.|+ ...|..+.+.+...+.++.|...+.+..... +....++..|..
T Consensus 218 AiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~ 294 (966)
T KOG4626|consen 218 AIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLAC 294 (966)
T ss_pred eeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEE
Confidence 35789999999999999999999998876 4555 3578889999999999999998888887653 335677888888
Q ss_pred HHHhcCCHHHHHHHHHhccc--CC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHH
Q 040371 85 MYSKCGKIQMAKEVFDTVQR--ND-VSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD-SITFLGLLTACSHCGLVEE 160 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 160 (410)
.|-..|.+|.|+..+++..+ |+ ..+||.|..++-..|+..+|.+.|.+.+.. .|+ ....+.|...+...|.+++
T Consensus 295 iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 295 IYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEE 372 (966)
T ss_pred EEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchH
Confidence 89999999999999988764 33 468999999999999999999999888774 444 4668888999999999999
Q ss_pred HHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHH---HH
Q 040371 161 GRKYFDHMRSRYSIQPQ-LEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPD-VVVWRALLSACRTFKRLELGEVA---IV 234 (410)
Q Consensus 161 a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~---~~ 234 (410)
|..+|....+ +.|. ....+.|...|-+.|++++|...+++. .++|+ ...++.+-..|...|+.+.|.+. ..
T Consensus 373 A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 373 ATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred HHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 9999988763 3454 567888999999999999999988886 78887 46788888889999999999888 44
Q ss_pred hhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040371 235 NISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKK 269 (410)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 269 (410)
...|.-...+..|...|-.+|++.+|.+-+++..+
T Consensus 450 ~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 450 QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 55566667788899999999999999998887654
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.46 E-value=1e-10 Score=121.21 Aligned_cols=258 Identities=12% Similarity=0.045 Sum_probs=204.8
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 84 (410)
+...|..+..++.. +++++|+..|.+.... .|+......+..++...|++++|...++.+... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 56678888888876 8999999988887764 466655555556667899999999999998664 444455677788
Q ss_pred HHHhcCCHHHHHHHHHhcccCChhhHHHHH---HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 040371 85 MYSKCGKIQMAKEVFDTVQRNDVSVWNAMI---SGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG 161 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 161 (410)
.+.+.|+.++|...|++..+.+...++... ....+.|++++|+..|++..+ ..|+...+..+..++.+.|+.++|
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHH
Confidence 899999999999999988765443333333 333345999999999999987 457788889999999999999999
Q ss_pred HHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHH---HHh
Q 040371 162 RKYFDHMRSRYSIQP-QLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGEVA---IVN 235 (410)
Q Consensus 162 ~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~---~~~ 235 (410)
...|+..... .| +...++.+...+...|++++|+..+++. ...| +...+..+-.++...|++++|+.. ..+
T Consensus 629 ~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 629 VSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999998853 44 4678888888999999999999999987 5566 567888999999999999999998 556
Q ss_pred hccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 040371 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGV 272 (410)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 272 (410)
..|.+..+.........+..+++.|.+-+++-...+.
T Consensus 706 l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 706 DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 7787777777788888888888888887776655544
No 23
>PF13041 PPR_2: PPR repeat family
Probab=99.45 E-value=2.8e-13 Score=87.91 Aligned_cols=50 Identities=30% Similarity=0.440 Sum_probs=46.7
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 040371 105 NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154 (410)
Q Consensus 105 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 154 (410)
||+++||++|.+|++.|++++|+++|++|++.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999875
No 24
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.42 E-value=1e-10 Score=111.85 Aligned_cols=295 Identities=9% Similarity=-0.059 Sum_probs=200.6
Q ss_pred HHHHHHHH--HcCCHhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 040371 10 NSMIGGFV--RNARFDEALRFFREMLSSKVEPDK-FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMY 86 (410)
Q Consensus 10 n~li~~~~--~~g~~~~a~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 86 (410)
..+..|.. ..|+++.|.+.+.+..+. .|+. ..+.....+....|+.+.+.+.+....+..-.++..+.-.....+
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 33444443 479999999999887664 4553 445556677888999999999999998764333344555668889
Q ss_pred HhcCCHHHHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HccCCHHH
Q 040371 87 SKCGKIQMAKEVFDTVQR--N-DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC---SHCGLVEE 160 (410)
Q Consensus 87 ~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~---~~~g~~~~ 160 (410)
...|+++.|...++.+.+ | +...+..+...|.+.|++++|.+++..+.+.++.++......-..++ ...+..++
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999874 3 56688899999999999999999999999987543332211111222 22233333
Q ss_pred HHHHHHHhhhhc--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHH--HhcCchhHHHHH--
Q 040371 161 GRKYFDHMRSRY--SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDVVVW-RALLSAC--RTFKRLELGEVA-- 232 (410)
Q Consensus 161 a~~~~~~m~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~li~~~--~~~g~~~~a~~~-- 232 (410)
+.+.+..+.+.. ....+...+..+...+...|+.++|.+++++. ...||.... ..++..+ ...++.+.+.+.
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 334555444321 11237888999999999999999999999987 555665421 0122322 334666666666
Q ss_pred -HHhhccCCC--chHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHH
Q 040371 233 -IVNISRLMG--GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGS 309 (410)
Q Consensus 233 -~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (410)
..+..|.++ ....++...|.+.|+|++|.+.|+........|++.... . +..-+...|+.++|.+.+++
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~-------La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-M-------AADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-H-------HHHHHHHcCCHHHHHHHHHH
Confidence 566778888 777899999999999999999999544433344442211 0 22224456777888777775
Q ss_pred HHHHH
Q 040371 310 LIQRT 314 (410)
Q Consensus 310 l~~~m 314 (410)
-...+
T Consensus 396 ~l~~~ 400 (409)
T TIGR00540 396 SLGLM 400 (409)
T ss_pred HHHHH
Confidence 44433
No 25
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.42 E-value=4.6e-10 Score=120.81 Aligned_cols=257 Identities=11% Similarity=0.042 Sum_probs=200.2
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 040371 9 WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSK 88 (410)
Q Consensus 9 ~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 88 (410)
|..+...+...|++++|++.|++.++.. +-+...+..+...+.+.|++++|...++.+++.. +.+...+..+...+.+
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~ 541 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSG 541 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 4556677889999999999999998753 2255677888899999999999999999998764 3456666666667788
Q ss_pred cCCHHHHHHHHHhcccCC----h---------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 040371 89 CGKIQMAKEVFDTVQRND----V---------SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHC 155 (410)
Q Consensus 89 ~g~~~~A~~~f~~m~~~~----~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 155 (410)
.|+.++|...++.++... . ..+..+...+...|+.++|.++++. .+++...+..+...+.+.
T Consensus 542 ~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~ 616 (1157)
T PRK11447 542 SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQR 616 (1157)
T ss_pred CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHc
Confidence 999999999999886421 1 1123456678889999999999872 344556677788899999
Q ss_pred CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHH
Q 040371 156 GLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGEVAI 233 (410)
Q Consensus 156 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 233 (410)
|+.++|...|+...+. -+.+...+..+...|...|++++|++.++.. ...| +..++..+..++...|++++|.+++
T Consensus 617 g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 694 (1157)
T PRK11447 617 GDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTF 694 (1157)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999853 2335788999999999999999999999987 3455 4566777778888999999999994
Q ss_pred Hhh---ccCCC------chHHHHHHHHHhcCChhHHHHHHHHHH-hCCCcC
Q 040371 234 VNI---SRLMG------GDYVLLSNMYCYLKRWDTAENVREIMK-KKGVRK 274 (410)
Q Consensus 234 ~~~---~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~~~ 274 (410)
.+. .|.++ ..+..+...+...|++++|...++... ..|+.|
T Consensus 695 ~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 695 NRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 433 33332 244556888999999999999998774 345543
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=3e-10 Score=102.35 Aligned_cols=225 Identities=18% Similarity=0.216 Sum_probs=176.8
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 040371 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALI 83 (410)
Q Consensus 4 ~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 83 (410)
++..||.+||.|.++--..+.|.+++++-.....+.+..+||.++.+-+- ..++.+...|....+.||..++|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHH
Confidence 35579999999999999999999999999988889999999999987653 44588999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHH----Hhcc----cCChhhHHHHHHHHHHcCChHH-HHHHHHHHHHC----CCC---C-CHHHHH
Q 040371 84 DMYSKCGKIQMAKEVF----DTVQ----RNDVSVWNAMISGVAIHGLAAD-ASAIFTKMEMF----NVL---P-DSITFL 146 (410)
Q Consensus 84 ~~y~~~g~~~~A~~~f----~~m~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~----g~~---p-~~~t~~ 146 (410)
.+.++.|+++.|++.+ .+|+ +|...+|.-+|..+.+.+++.+ |..+..+.+.. .++ | |...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 9999999998877655 4554 5788899999999999988754 45555565543 233 3 456688
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhcC---CCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhC-C--CCCCHHHHHHHH
Q 040371 147 GLLTACSHCGLVEEGRKYFDHMRSRYS---IQPQ---LEHYGAMVDLLGRAGHIEEAYGLITSM-T--MEPDVVVWRALL 217 (410)
Q Consensus 147 ~ll~a~~~~g~~~~a~~~~~~m~~~~~---~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~--~~p~~~~~~~li 217 (410)
..+..|.+..+.+.|.++..-....-+ +.|+ ..-|..+.++.++....+.-+++++.| | .-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 999999999999999999887764211 2233 234667888888888899999999988 2 447777777777
Q ss_pred HHHHhcCchhHHHHH
Q 040371 218 SACRTFKRLELGEVA 232 (410)
Q Consensus 218 ~~~~~~g~~~~a~~~ 232 (410)
.+....+.++..-++
T Consensus 441 rA~~v~~~~e~ipRi 455 (625)
T KOG4422|consen 441 RALDVANRLEVIPRI 455 (625)
T ss_pred HHHhhcCcchhHHHH
Confidence 777766665544443
No 27
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.39 E-value=5.8e-10 Score=106.12 Aligned_cols=274 Identities=11% Similarity=0.034 Sum_probs=199.6
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHH--HHHHHHHHHHhcCCHHHHH
Q 040371 19 NARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFI--LSAALIDMYSKCGKIQMAK 96 (410)
Q Consensus 19 ~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~ 96 (410)
.|++++|.+.+....+..-.| ...|.....+..+.|+++.+.+.+.++.+. .|+.. ..-.....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 599999998887755432112 334555556668999999999999999875 44443 3334477899999999999
Q ss_pred HHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHH
Q 040371 97 EVFDTVQRN---DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDS-------ITFLGLLTACSHCGLVEEGRKYFD 166 (410)
Q Consensus 97 ~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~ 166 (410)
..++++.+. +......+...|.+.|++++|.+++..+.+.+..++. .+|..++..-....+.+...++++
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999988743 5678888999999999999999999999988765433 234444444445556677777777
Q ss_pred HhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHH---HHhhccCCCc
Q 040371 167 HMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMGG 242 (410)
Q Consensus 167 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~ 242 (410)
...+. .+.++....++...+...|+.++|.+++++. ...||.... ++.+....++.+.+.+. ..+..|+++.
T Consensus 254 ~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~ 329 (398)
T PRK10747 254 NQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPL 329 (398)
T ss_pred hCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHH
Confidence 77643 3457888999999999999999999999887 444555322 23333455888888888 6677888988
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHH
Q 040371 243 DYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGS 309 (410)
Q Consensus 243 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (410)
.+..+...+.+.|+|++|.+.|+...+.. |++.. +.. +...+...|+.+++...+++
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~~-~~~-------La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQR--PDAYD-YAW-------LADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH-HHH-------HHHHHHHcCCHHHHHHHHHH
Confidence 89999999999999999999999988753 33211 111 22334456777777666653
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.38 E-value=4.1e-13 Score=121.82 Aligned_cols=258 Identities=14% Similarity=0.091 Sum_probs=102.4
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHcC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCC---hhhHHHHHHHHHHcC
Q 040371 46 SVIYGCARLGALNHAYWVHNLIIEKK-IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRND---VSVWNAMISGVAIHG 121 (410)
Q Consensus 46 ~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g 121 (410)
.+...+.+.|+++.|.+++....... .+.|...|..+.......|+.+.|++.++++...+ ...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 55778889999999999996655443 35577788888888899999999999999998543 4466667766 6899
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 040371 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLI 201 (410)
Q Consensus 122 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 201 (410)
++++|.+++.+..+. .++...+...+..+...++++++..+++.+......+++...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999877654 356667778888999999999999999998754345667888999999999999999999999
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCC
Q 040371 202 TSM-TMEPD-VVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQ 276 (410)
Q Consensus 202 ~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 276 (410)
++. ...|+ ......++..+...|+.+++..+ +.+..|.++..+..+..+|...|+.++|...+++.....- .+|
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-~d~ 248 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP-DDP 248 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-T-H
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccc-ccc
Confidence 987 56674 67888999999999999997777 4555578888899999999999999999999999876431 122
Q ss_pred ceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHH
Q 040371 277 GKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTK 315 (410)
Q Consensus 277 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 315 (410)
.|.. .+...+...|+.++|..+.+++.+.++
T Consensus 249 --~~~~------~~a~~l~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 249 --LWLL------AYADALEQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp --HHHH------HHHHHHT--------------------
T ss_pred --cccc------ccccccccccccccccccccccccccC
Confidence 2211 022334567888888888877666554
No 29
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.38 E-value=1.7e-09 Score=111.40 Aligned_cols=293 Identities=10% Similarity=0.016 Sum_probs=177.4
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM 85 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 85 (410)
...+..+...+...|++++|+..+++..+. -+.+.. +..+..++...|+.+.|...++++++.. +.+..++..+...
T Consensus 83 ~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~ 159 (765)
T PRK10049 83 DDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQA 159 (765)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344556666666667777777766666654 122344 6666666666677777777777666653 2344444555555
Q ss_pred HHhcCCHHHHHHHHHhccc---------------------------------------------------CChh-hH---
Q 040371 86 YSKCGKIQMAKEVFDTVQR---------------------------------------------------NDVS-VW--- 110 (410)
Q Consensus 86 y~~~g~~~~A~~~f~~m~~---------------------------------------------------~~~~-~~--- 110 (410)
+.+.|..++|.+.++.... |+.. .+
T Consensus 160 l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 160 LRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred HHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 5555555544443332111 0000 00
Q ss_pred -HHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCC--ChhHHHHHHH
Q 040371 111 -NAMISGVAIHGLAADASAIFTKMEMFNVL-PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP--QLEHYGAMVD 186 (410)
Q Consensus 111 -~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~~li~ 186 (410)
...+..+...|+.++|+..|+++.+.+.. |+. .-..+..++...|++++|...|+.+.......+ .......+..
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~ 318 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFY 318 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHH
Confidence 00122345667888888888888776532 332 222246678888888888888888764311110 1234566666
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-------------C---HHHHHHHHHHHHhcCchhHHHHH---HHhhccCCCchHHH
Q 040371 187 LLGRAGHIEEAYGLITSM-TMEP-------------D---VVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDYVL 246 (410)
Q Consensus 187 ~~~~~g~~~~A~~~~~~m-~~~p-------------~---~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~ 246 (410)
++.+.|++++|..+++++ ...| + ...+..+...+...|++++|+.+ +....|.++..+..
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~ 398 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRID 398 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 788889999998888877 2222 2 12345566677888999999988 44566888888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHH
Q 040371 247 LSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLI 311 (410)
Q Consensus 247 l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 311 (410)
+..++...|+.++|++.+++..... |+....++. ........++.++|...++++.
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~-------~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEVLE--PRNINLEVE-------QAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHH-------HHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999998877643 332111110 1111234567888888877543
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.35 E-value=1e-09 Score=113.91 Aligned_cols=224 Identities=10% Similarity=-0.025 Sum_probs=180.1
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc--CChhhHHHHHHHH
Q 040371 40 DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR--NDVSVWNAMISGV 117 (410)
Q Consensus 40 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~ 117 (410)
+...|..+..++.. ++.++|...+....... |+......+...+.+.|++++|...|+++.. ++...+..+...+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 56677777777766 88888999888777653 5544444455556789999999999998763 4455677778888
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 040371 118 AIHGLAADASAIFTKMEMFNVLPDS-ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196 (410)
Q Consensus 118 ~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 196 (410)
.+.|+.++|...|++..... |+. ..+..+.......|++++|...++...+ +.|+...|..+...+.+.|++++
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999998754 433 3343444455567999999999999884 36778899999999999999999
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 040371 197 AYGLITSM-TMEPD-VVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKG 271 (410)
Q Consensus 197 A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 271 (410)
|...+++. ...|+ ...+..+-.++...|+.++|... ..+..|.++..+..+..+|...|++++|...+++..+..
T Consensus 628 A~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 628 AVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999987 56675 55677777789999999999998 567789999999999999999999999999999887643
No 31
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.35 E-value=1e-09 Score=96.10 Aligned_cols=192 Identities=13% Similarity=0.094 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMY 86 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 86 (410)
..|..+...|...|++++|.+.|++..+.. +.+...+..+...+...|+++.|.+.++...+.. +.+...+..+...|
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 345555666666666666666666655432 2234455555556666666666666666665543 23444555555566
Q ss_pred HhcCCHHHHHHHHHhcccC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 040371 87 SKCGKIQMAKEVFDTVQRN-----DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG 161 (410)
Q Consensus 87 ~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 161 (410)
...|++++|.+.|++.... ....|..+...|...|++++|...|.+..... +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666554321 22344445555555666666666665555432 11233445555555556666666
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 040371 162 RKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203 (410)
Q Consensus 162 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 203 (410)
...++...+. .+.+...+..+...+...|+.++|..+.+.
T Consensus 189 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 189 RAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6666555532 122334444555555555555555555444
No 32
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=1.5e-10 Score=109.81 Aligned_cols=242 Identities=13% Similarity=0.064 Sum_probs=186.0
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCCHHHHHHH
Q 040371 21 RFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKK--IELNFILSAALIDMYSKCGKIQMAKEV 98 (410)
Q Consensus 21 ~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~ 98 (410)
+.++|+.+|.+.... +.-.......+..+|...+++++++.+|+.+.+.. .--+..+|.+.+-..-+.=.+.---+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 568899999985443 34345677788899999999999999999998763 123567787776554433222221111
Q ss_pred HHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCC
Q 040371 99 FDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177 (410)
Q Consensus 99 f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~ 177 (410)
+-.+......+|-++.+.|..+++.+.|++.|++..+ +.| ..++|+.+..-+.....+|.|...|+.... .+
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~ 485 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----VD 485 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CC
Confidence 2222233568999999999999999999999999876 456 678888888888888899999999987663 36
Q ss_pred hhHHHHH---HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHH---HHhhccCCCchHHHHHH
Q 040371 178 LEHYGAM---VDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDYVLLSN 249 (410)
Q Consensus 178 ~~~~~~l---i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~l~~ 249 (410)
+.+|+++ .-.|.+.++++.|+-.|++. .+.| +.+....+-..+-+.|+.|+|+++ ...++|.++..-.--+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 6677654 45688999999999999887 7777 566667777778899999999999 56678888888888888
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 040371 250 MYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 250 ~~~~~g~~~~a~~~~~~m~~~ 270 (410)
.+...++.++|.+.++++++-
T Consensus 566 il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHh
Confidence 899999999999999999874
No 33
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.34 E-value=3.4e-09 Score=109.25 Aligned_cols=263 Identities=9% Similarity=-0.018 Sum_probs=189.7
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhCCHHH------------------------
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEP-DKFTFASVIYGCARLGALNH------------------------ 59 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~------------------------ 59 (410)
+.. |..+...+...|++++|+..+++..+. .| +...+..+..++...+..+.
T Consensus 116 ~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~ 192 (765)
T PRK10049 116 KAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAA 192 (765)
T ss_pred CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344 888889999999999999999999875 44 44455555555555555443
Q ss_pred ----------------------HHHHHHHHHHc-CCCccHH--HHHH---HHHHHHhcCCHHHHHHHHHhcccCC--hh-
Q 040371 60 ----------------------AYWVHNLIIEK-KIELNFI--LSAA---LIDMYSKCGKIQMAKEVFDTVQRND--VS- 108 (410)
Q Consensus 60 ----------------------a~~~~~~~~~~-g~~~~~~--~~~~---li~~y~~~g~~~~A~~~f~~m~~~~--~~- 108 (410)
|.+.++.+++. ...|+.. ...+ .+..+...|++++|+..|+++.+.+ ..
T Consensus 193 ~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~ 272 (765)
T PRK10049 193 ELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP 272 (765)
T ss_pred HHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH
Confidence 33344444432 1122211 1111 1234457799999999999988542 11
Q ss_pred -hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC----------C
Q 040371 109 -VWNAMISGVAIHGLAADASAIFTKMEMFNVLP---DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS----------I 174 (410)
Q Consensus 109 -~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~ 174 (410)
.--.+...|...|++++|+..|+++....... .......+..++...|++++|.++++.+.+... -
T Consensus 273 ~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~ 352 (765)
T PRK10049 273 WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTS 352 (765)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCC
Confidence 11224678999999999999999987643111 123456677788999999999999999885311 1
Q ss_pred CCC---hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHH---HHhhccCCCchHHH
Q 040371 175 QPQ---LEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDYVL 246 (410)
Q Consensus 175 ~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~ 246 (410)
.|+ ...+..+...+...|++++|+++++++ ...| +...+..+...+...|++++|+.. .....|.+...+..
T Consensus 353 ~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~ 432 (765)
T PRK10049 353 IPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVE 432 (765)
T ss_pred CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence 122 234566778899999999999999997 4445 567888999999999999999999 66778888888999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 040371 247 LSNMYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 247 l~~~~~~~g~~~~a~~~~~~m~~~ 270 (410)
++..+.+.|++++|+.+++++.+.
T Consensus 433 ~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 433 QAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999998764
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.31 E-value=4e-09 Score=100.38 Aligned_cols=252 Identities=9% Similarity=0.021 Sum_probs=189.3
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 040371 8 SWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFA--SVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM 85 (410)
Q Consensus 8 ~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~--~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 85 (410)
.|-....+..+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|.+.++.+.+.. +.++.+...+...
T Consensus 120 ~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~ 196 (398)
T PRK10747 120 NYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQA 196 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3433344447899999999999999763 66654433 33567788999999999999999886 5578999999999
Q ss_pred HHhcCCHHHHHHHHHhcccCCh-----------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 040371 86 YSKCGKIQMAKEVFDTVQRNDV-----------SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154 (410)
Q Consensus 86 y~~~g~~~~A~~~f~~m~~~~~-----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 154 (410)
|.+.|++++|.+++..+.+... .+|..++.......+.+...++++..-.. .+.+......+..++..
T Consensus 197 ~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~ 275 (398)
T PRK10747 197 YIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIE 275 (398)
T ss_pred HHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHH
Confidence 9999999999999999875422 13444444444555566667777766443 34567788889999999
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHH
Q 040371 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPD-VVVWRALLSACRTFKRLELGEVA 232 (410)
Q Consensus 155 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~ 232 (410)
.|+.++|..+++...+. .|+... .++.+....++.+++++..++. ...|+ ......+-..|...+++++|.+.
T Consensus 276 ~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~ 350 (398)
T PRK10747 276 CDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLA 350 (398)
T ss_pred CCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999988753 444422 2333344569999999999887 55665 45677888889999999999999
Q ss_pred HHhhc--cCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040371 233 IVNIS--RLMGGDYVLLSNMYCYLKRWDTAENVREIMK 268 (410)
Q Consensus 233 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 268 (410)
+.+.- .++...+..|..++.+.|+.++|.+++++-.
T Consensus 351 le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 351 FRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 54432 2333567789999999999999999998653
No 35
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.29 E-value=1.8e-09 Score=94.47 Aligned_cols=193 Identities=14% Similarity=0.049 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040371 76 FILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC 152 (410)
Q Consensus 76 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 152 (410)
...+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|.+.|++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 44455555666666666666666655432 134455555566666666666666666655532 22334455555566
Q ss_pred HccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHH
Q 040371 153 SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGE 230 (410)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~ 230 (410)
...|++++|...++...+..........+..+...|...|++++|...+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666665532111122344555556666666666666666654 2233 3445555666666666666666
Q ss_pred HH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040371 231 VA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKK 269 (410)
Q Consensus 231 ~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 269 (410)
.. .....|.++..+..+...+...|+.++|..+.+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 65 2223344445555666777777777777777666544
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=99.27 E-value=9.4e-09 Score=102.09 Aligned_cols=257 Identities=12% Similarity=0.010 Sum_probs=181.4
Q ss_pred ChhHHHHHHHHHHH-----cCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh---------hCCHHHHHHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVR-----NARFDEALRFFREMLSSKVEPD-KFTFASVIYGCAR---------LGALNHAYWVHNLIIE 69 (410)
Q Consensus 5 ~~~~~n~li~~~~~-----~g~~~~a~~l~~~m~~~g~~pd-~~t~~~ll~a~~~---------~~~~~~a~~~~~~~~~ 69 (410)
+..+|...+.+-.. .+..++|+.+|++..+. .|+ ...|..+..++.. .+++++|...++++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44566666666422 13467999999999874 454 4456555554432 2347899999999998
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHH
Q 040371 70 KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR--N-DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDS-ITF 145 (410)
Q Consensus 70 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~ 145 (410)
.. +.+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..|++..+. .|+. ..+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 75 45788888999999999999999999998764 4 4568888899999999999999999999885 4442 233
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHh
Q 040371 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQP-QLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDVV-VWRALLSACRT 222 (410)
Q Consensus 146 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~li~~~~~ 222 (410)
..++..+...|++++|...++...+. . .| +...+..+...|...|++++|...++++ +..|+.. .++.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 33444566789999999999998753 2 34 3556777888899999999999999987 4455544 44555556677
Q ss_pred cCchhHHHHHH---HhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 040371 223 FKRLELGEVAI---VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKG 271 (410)
Q Consensus 223 ~g~~~~a~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 271 (410)
.|+ .+...+ .+.....+..+..+...|+-.|+-+.+..+ +++.+.|
T Consensus 488 ~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 774 555542 222222222233366667778887877777 7777665
No 37
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=4.8e-09 Score=94.78 Aligned_cols=221 Identities=15% Similarity=0.247 Sum_probs=163.9
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hhCCHHHHH-HHHHHHHH-------------
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA--RLGALNHAY-WVHNLIIE------------- 69 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~--~~~~~~~a~-~~~~~~~~------------- 69 (410)
+++=|.|+.. ..+|..+++.-+|+.|.+.|+......-..++..-+ ...++--+. +-|-.|.+
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 3455666654 357889999999999999998877766555554332 222221111 11111111
Q ss_pred ------cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 040371 70 ------KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN----DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVL 139 (410)
Q Consensus 70 ------~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 139 (410)
.-.+.+..++.++|.+.+|--..+.|++++.+-... +..++|.+|.+-.-.. ..++..+|....++
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcC
Confidence 123556789999999999999999999999987643 6778999987654332 27899999999999
Q ss_pred CCHHHHHHHHHHHHccCCHHH----HHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH-HHHHHHhC----------
Q 040371 140 PDSITFLGLLTACSHCGLVEE----GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE-AYGLITSM---------- 204 (410)
Q Consensus 140 p~~~t~~~ll~a~~~~g~~~~----a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m---------- 204 (410)
||..|||++++..++.|+++. |.+++.+|++ .|++|...+|..+|..+.+-++..+ |..++.++
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKe-iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKE-IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 999999999999999998765 5567788885 5999999999999999999887754 44444433
Q ss_pred CCCC-CHHHHHHHHHHHHhcCchhHHHHH
Q 040371 205 TMEP-DVVVWRALLSACRTFKRLELGEVA 232 (410)
Q Consensus 205 ~~~p-~~~~~~~li~~~~~~g~~~~a~~~ 232 (410)
++.| |..-|.+.++.|....+.+.|.++
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v 378 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQV 378 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHH
Confidence 3445 456788889999999999999998
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.21 E-value=2.9e-08 Score=94.96 Aligned_cols=255 Identities=11% Similarity=-0.005 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 040371 8 SWNSMIGGFVRNARFDEALRFFREMLSSKVEPDK--FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM 85 (410)
Q Consensus 8 ~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 85 (410)
.+=....++.+.|++++|.+.|.+..+. .|+. ..-..........|+++.|.+.++.+.+.. +.+..+...+...
T Consensus 120 ~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~ 196 (409)
T TIGR00540 120 NLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEA 196 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3444556677889999999999998764 3444 234445777888999999999999999986 5578899999999
Q ss_pred HHhcCCHHHHHHHHHhcccC---ChhhHHH----HHHHHHHcCChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHcc
Q 040371 86 YSKCGKIQMAKEVFDTVQRN---DVSVWNA----MISGVAIHGLAADASAIFTKMEMFNV---LPDSITFLGLLTACSHC 155 (410)
Q Consensus 86 y~~~g~~~~A~~~f~~m~~~---~~~~~~~----li~~~~~~g~~~~A~~l~~~m~~~g~---~p~~~t~~~ll~a~~~~ 155 (410)
|.+.|++++|.+.++.+.+. +...+.. ...++...+..+++.+.+..+..... +.+...+..+...+...
T Consensus 197 ~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~ 276 (409)
T TIGR00540 197 YIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDC 276 (409)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHC
Confidence 99999999999999988854 2222211 11122333333444445555554321 13677888888999999
Q ss_pred CCHHHHHHHHHHhhhhcCCCCChhH-HHHHHHHH--HhcCCHHHHHHHHHhC-CCCCCH---HHHHHHHHHHHhcCchhH
Q 040371 156 GLVEEGRKYFDHMRSRYSIQPQLEH-YGAMVDLL--GRAGHIEEAYGLITSM-TMEPDV---VVWRALLSACRTFKRLEL 228 (410)
Q Consensus 156 g~~~~a~~~~~~m~~~~~~~~~~~~-~~~li~~~--~~~g~~~~A~~~~~~m-~~~p~~---~~~~~li~~~~~~g~~~~ 228 (410)
|+.++|.++++...++ .|+... ...++..+ ...++.+.+.+.+++. ...|+. ....++-..+.+.|++++
T Consensus 277 g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~ 353 (409)
T TIGR00540 277 DDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIE 353 (409)
T ss_pred CChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHH
Confidence 9999999999999864 344331 11133333 3357778888888776 444543 455677888999999999
Q ss_pred HHHHHHh--h--ccCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040371 229 GEVAIVN--I--SRLMGGDYVLLSNMYCYLKRWDTAENVREIMK 268 (410)
Q Consensus 229 a~~~~~~--~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 268 (410)
|.+.+.. . ..+++..+..+...+.+.|+.++|.+++++-.
T Consensus 354 A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 354 AADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999662 3 23455567899999999999999999998743
No 39
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.14 E-value=1.6e-08 Score=96.64 Aligned_cols=228 Identities=17% Similarity=0.141 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHc-----CC-CccHH-HHHHHHHHHHhcCCHHHHHHHHHhccc-------C-
Q 040371 41 KFTFASVIYGCARLGALNHAYWVHNLIIEK-----KI-ELNFI-LSAALIDMYSKCGKIQMAKEVFDTVQR-------N- 105 (410)
Q Consensus 41 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----g~-~~~~~-~~~~li~~y~~~g~~~~A~~~f~~m~~-------~- 105 (410)
..|...+...|...|+++.|..++++.++. |. .|.+. ..+.+...|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346677889999999999999999888765 21 22222 334577789999999999999987752 1
Q ss_pred ---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-----CCC-CCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhhcC--
Q 040371 106 ---DVSVWNAMISGVAIHGLAADASAIFTKMEMF-----NVL-PDS-ITFLGLLTACSHCGLVEEGRKYFDHMRSRYS-- 173 (410)
Q Consensus 106 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~-p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 173 (410)
-..+++.|...|.+.|++++|...+++..+- |.. |.. .-++.+...|...+.+++|..+++...+.+-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2357888888999999999888888766431 222 222 2366777888999999999999988765432
Q ss_pred CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCchhHHHHH-------
Q 040371 174 IQPQ----LEHYGAMVDLLGRAGHIEEAYGLITSM---------TMEPD-VVVWRALLSACRTFKRLELGEVA------- 232 (410)
Q Consensus 174 ~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~li~~~~~~g~~~~a~~~------- 232 (410)
..++ ..+++.|...|-..|++++|.+++++. +..+. ....+.|-.+|.+.+++++|.++
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1222 467999999999999999999999887 11222 45667788889999999988887
Q ss_pred HHhhccCC---CchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040371 233 IVNISRLM---GGDYVLLSNMYCYLKRWDTAENVREIMK 268 (410)
Q Consensus 233 ~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 268 (410)
.....|.. ..+|..|..+|.+.|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22223333 3468889999999999999999988765
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=6.1e-08 Score=88.31 Aligned_cols=198 Identities=13% Similarity=0.069 Sum_probs=153.3
Q ss_pred hCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcc---cCChhhHHHHHHHHHHcCChHHHHHHH
Q 040371 54 LGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ---RNDVSVWNAMISGVAIHGLAADASAIF 130 (410)
Q Consensus 54 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 130 (410)
.|+++.|.+.+...+...-.-....||. .-.+-+.|++++|+..|-++. ..++...-.+.+.|-...++..|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 4678888888888877643333334433 234667889999999887664 456667777788888888999999988
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 040371 131 TKMEMFNVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP 208 (410)
Q Consensus 131 ~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 208 (410)
.+... +.| |......|...|-+.|+-.+|.+.+-.--+ -++.+..+...|..-|....-+++|...|++. -++|
T Consensus 582 ~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 582 MQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 66543 444 677788888999999999999988766442 34567888888888899999999999999988 5789
Q ss_pred CHHHHHHHHHHH-HhcCchhHHHHH---HHhhccCCCchHHHHHHHHHhcCC
Q 040371 209 DVVVWRALLSAC-RTFKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKR 256 (410)
Q Consensus 209 ~~~~~~~li~~~-~~~g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~ 256 (410)
+..-|..+|..| ++.|++..|..+ ..+..|.+....-.|+..+...|.
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999876 678999999999 455668888888888888887775
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.13 E-value=1.1e-07 Score=83.17 Aligned_cols=246 Identities=11% Similarity=0.101 Sum_probs=181.7
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCc---cHHHHHHHHHHHHhcCCHHH
Q 040371 18 RNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIEL---NFILSAALIDMYSKCGKIQM 94 (410)
Q Consensus 18 ~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~ 94 (410)
-+.++++|.++|.+|.+.. +-+..+-.++.+.+-+.|..|.|+.+|+-+.++.--+ .....-.|..=|.+.|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 4678999999999999842 3344567788899999999999999999998863211 23445677888999999999
Q ss_pred HHHHHHhcccCCh---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHH
Q 040371 95 AKEVFDTVQRNDV---SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSI----TFLGLLTACSHCGLVEEGRKYFDH 167 (410)
Q Consensus 95 A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~ 167 (410)
|+.+|..+.+.+. .+..-++..|-+..+|++|++.-+++...+-.+..+ .|.-+........+++.|...+..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999999887433 466678999999999999999999998876555432 355566666678899999999998
Q ss_pred hhhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH--HHHHHHHHHHHhcCchhHHHHHHHhhccCCC--
Q 040371 168 MRSRYSIQPQ-LEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDV--VVWRALLSACRTFKRLELGEVAIVNISRLMG-- 241 (410)
Q Consensus 168 m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-- 241 (410)
..+. .|+ +..--.+.+.+...|+++.|.+.++.. ...|+. .+...|..+|.+.|+.+++...+.+....+.
T Consensus 206 Alqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 206 ALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 8753 333 444556678899999999999999988 445653 4677889999999999999998555433322
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHH
Q 040371 242 GDYVLLSNMYCYLKRWDTAENVREIM 267 (410)
Q Consensus 242 ~~~~~l~~~~~~~g~~~~a~~~~~~m 267 (410)
..-..|...-....-.+.|...+.+-
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Q 308 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQ 308 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 23333334334444455555554433
No 42
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.13 E-value=1.4e-07 Score=96.30 Aligned_cols=255 Identities=12% Similarity=0.076 Sum_probs=174.3
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 040371 13 IGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKI 92 (410)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 92 (410)
...|...|++++|+++|+++.+.. +-|...+..++..+...++.++|.+.++.+.+. .|+...+-.++..+...++.
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 446666788888888888877653 234555666667777777777777777777664 34444444444444445555
Q ss_pred HHHHHHHHhccc--C------------------------------Ch---------------------------------
Q 040371 93 QMAKEVFDTVQR--N------------------------------DV--------------------------------- 107 (410)
Q Consensus 93 ~~A~~~f~~m~~--~------------------------------~~--------------------------------- 107 (410)
.+|.+.++++.+ | +.
T Consensus 186 ~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 186 YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 456666655431 1 00
Q ss_pred -----------------------hhH----HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 040371 108 -----------------------SVW----NAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE 160 (410)
Q Consensus 108 -----------------------~~~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 160 (410)
..| --.+-++...|+..++++.|+.|...|.+....+-..+..+|...+..++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 000 01234566678888899999998888866555677888899999999999
Q ss_pred HHHHHHHhhhhcC----CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--------------C--CCHH-HHHHHHHH
Q 040371 161 GRKYFDHMRSRYS----IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM--------------E--PDVV-VWRALLSA 219 (410)
Q Consensus 161 a~~~~~~m~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------------~--p~~~-~~~~li~~ 219 (410)
|..++..+....+ ..++......|.-+|..++++++|..+++++.- . ||-. ....++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 9999998865322 123344457788889999999999999888711 1 2322 33445666
Q ss_pred HHhcCchhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040371 220 CRTFKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 220 ~~~~g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 270 (410)
+.-.|++.+|++. +....|.|+.....+.+++...|...+|++.++.....
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 7888999999998 45556888888889999999999999999999766543
No 43
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.12 E-value=1.4e-08 Score=96.97 Aligned_cols=225 Identities=13% Similarity=0.094 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHC-----C-CCCCHHH-HHHHHHHHHhhCCHHHHHHHHHHHHHc-----CC--C
Q 040371 8 SWNSMIGGFVRNARFDEALRFFREMLSS-----K-VEPDKFT-FASVIYGCARLGALNHAYWVHNLIIEK-----KI--E 73 (410)
Q Consensus 8 ~~n~li~~~~~~g~~~~a~~l~~~m~~~-----g-~~pd~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~-----g~--~ 73 (410)
+...+...|...|++++|..+++..++. | ..|...+ .+.+...|...+.+++|..+|+.++.. |- +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4445999999999999999999988753 2 1344443 334677888999999999999998754 21 2
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHhccc----------CCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHC---CCC
Q 040371 74 LNFILSAALIDMYSKCGKIQMAKEVFDTVQR----------NDV-SVWNAMISGVAIHGLAADASAIFTKMEMF---NVL 139 (410)
Q Consensus 74 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~ 139 (410)
.-..+++.|...|.+.|++++|...+++..+ +.+ ...+.++..+...+++++|..+++...+. -..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2245667777889999999999888775431 222 24677788888999999999999876542 233
Q ss_pred CCH----HHHHHHHHHHHccCCHHHHHHHHHHhhhhc----C-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-----
Q 040371 140 PDS----ITFLGLLTACSHCGLVEEGRKYFDHMRSRY----S-IQPQ-LEHYGAMVDLLGRAGHIEEAYGLITSM----- 204 (410)
Q Consensus 140 p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m----- 204 (410)
++. .+++.+...|.+.|++++|.++|..+.... + ..+. ...++.|...|.+.+++.+|.++|.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 333 578899999999999999999999987542 1 1222 456788888999999999998888775
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcCchhHHHHH
Q 040371 205 ---TMEPD-VVVWRALLSACRTFKRLELGEVA 232 (410)
Q Consensus 205 ---~~~p~-~~~~~~li~~~~~~g~~~~a~~~ 232 (410)
+-.|+ ..+|..|...|...|+++.|.++
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~ 472 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEEL 472 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHH
Confidence 23455 46899999999999999999998
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=1.3e-08 Score=96.94 Aligned_cols=251 Identities=14% Similarity=0.036 Sum_probs=192.3
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHhhCCHHHHHHHHHH-HHHcCCCccHHHHHHHHHHH
Q 040371 10 NSMIGGFVRNARFDEALRFFREMLSSK-V-EPDKFTFASVIYGCARLGALNHAYWVHNL-IIEKKIELNFILSAALIDMY 86 (410)
Q Consensus 10 n~li~~~~~~g~~~~a~~l~~~m~~~g-~-~pd~~t~~~ll~a~~~~~~~~~a~~~~~~-~~~~g~~~~~~~~~~li~~y 86 (410)
.-+-.+|...+++++|.++|+...+.. . .-+...|+++|--+-+. .+...+.+ +++. -+..+.+|.++.++|
T Consensus 357 ~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~Laq~Li~~-~~~sPesWca~GNcf 431 (638)
T KOG1126|consen 357 SQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLAQDLIDT-DPNSPESWCALGNCF 431 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHHHHHHhh-CCCCcHHHHHhcchh
Confidence 346678889999999999999998642 1 12567888887655321 12222222 2222 245689999999999
Q ss_pred HhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHH
Q 040371 87 SKCGKIQMAKEVFDTVQRN---DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD-SITFLGLLTACSHCGLVEEGR 162 (410)
Q Consensus 87 ~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 162 (410)
+-.++.+.|++.|++..+- ...+|+.+-.-+.....++.|...|+..+. +.|. -..|-.+.-.|.+.++++.|+
T Consensus 432 SLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae 509 (638)
T KOG1126|consen 432 SLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAE 509 (638)
T ss_pred hhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHH
Confidence 9999999999999998754 456888888888889999999999998754 3443 345667788899999999999
Q ss_pred HHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHH---HHhh
Q 040371 163 KYFDHMRSRYSIQPQ-LEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGEVA---IVNI 236 (410)
Q Consensus 163 ~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~---~~~~ 236 (410)
-.|+.+. .+.|. .+....+...+-+.|+.++|++++++. ...| |...--.-...+...++.++|... +.+.
T Consensus 510 ~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 510 FHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 9999987 45554 556667778899999999999999998 4444 444444455566778899999988 5555
Q ss_pred ccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040371 237 SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 270 (410)
-|.+..+|..+...|-+.|+.+.|..-|..+.+-
T Consensus 587 vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 587 VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 6888899999999999999999999888777654
No 45
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.11 E-value=1.1e-07 Score=93.61 Aligned_cols=272 Identities=16% Similarity=0.203 Sum_probs=174.6
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEP-DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALI 83 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 83 (410)
+...|-+|-..|-+.|+.++++..+-.. ..+.| |..-|..+..-..++|.+++|+-.|.++++.. +++....---.
T Consensus 172 ~~~ay~tL~~IyEqrGd~eK~l~~~llA--AHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers 248 (895)
T KOG2076|consen 172 NPIAYYTLGEIYEQRGDIEKALNFWLLA--AHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERS 248 (895)
T ss_pred chhhHHHHHHHHHHcccHHHHHHHHHHH--HhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHH
Confidence 4566777888888888887777766333 22333 55677777777777888888888888887775 45555555566
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCh--------------------------------------------hhHHHHHHHHHH
Q 040371 84 DMYSKCGKIQMAKEVFDTVQRNDV--------------------------------------------SVWNAMISGVAI 119 (410)
Q Consensus 84 ~~y~~~g~~~~A~~~f~~m~~~~~--------------------------------------------~~~~~li~~~~~ 119 (410)
.+|-+.|+...|...|.++.+.+. ..+|.++..|.+
T Consensus 249 ~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~ 328 (895)
T KOG2076|consen 249 SLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK 328 (895)
T ss_pred HHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 777888888877777766543211 123333334444
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH----------------------HHHH----HHHHHHHccCCHHHHHHHHHHhhhhcC
Q 040371 120 HGLAADASAIFTKMEMFNVLPDS----------------------ITFL----GLLTACSHCGLVEEGRKYFDHMRSRYS 173 (410)
Q Consensus 120 ~g~~~~A~~l~~~m~~~g~~p~~----------------------~t~~----~ll~a~~~~g~~~~a~~~~~~m~~~~~ 173 (410)
...++.|......+......+|. ..|. -+.-+..+....+....+.....++ .
T Consensus 329 ~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~-n 407 (895)
T KOG2076|consen 329 NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVED-N 407 (895)
T ss_pred hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHh-c
Confidence 44444444444444331111111 0000 1111122222233333333333322 3
Q ss_pred --CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCchhHHHHH---HHhhccCCCchHH
Q 040371 174 --IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT---MEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDYV 245 (410)
Q Consensus 174 --~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p~~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~~ 245 (410)
..-++..|.-+.++|...|++.+|+++|..+- ..-+...|-.+...|...|..+.|.+. .....|.+..+-.
T Consensus 408 ~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri 487 (895)
T KOG2076|consen 408 VWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARI 487 (895)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhh
Confidence 22346678889999999999999999999982 223678999999999999999999999 6778899989999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCcCCCceeE
Q 040371 246 LLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSW 280 (410)
Q Consensus 246 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 280 (410)
.|...|.+.|+.++|.+++..|..-+-..-++..|
T Consensus 488 ~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 488 TLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred hHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999999998876333222244555
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=99.09 E-value=5e-08 Score=96.94 Aligned_cols=217 Identities=9% Similarity=-0.047 Sum_probs=156.3
Q ss_pred hhHHHHHHHHHHH---------cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccH
Q 040371 6 VVSWNSMIGGFVR---------NARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNF 76 (410)
Q Consensus 6 ~~~~n~li~~~~~---------~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 76 (410)
...|..+..+|.. .+++++|...+++..+.. +-+...+..+..++...|++++|...++++++.+ +.+.
T Consensus 295 a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~ 372 (553)
T PRK12370 295 IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISA 372 (553)
T ss_pred HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCH
Confidence 3456655555442 345899999999998753 3367788888888899999999999999999986 5567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccc--CC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 040371 77 ILSAALIDMYSKCGKIQMAKEVFDTVQR--ND-VSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD-SITFLGLLTAC 152 (410)
Q Consensus 77 ~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 152 (410)
..+..+...|...|++++|...|++..+ |+ ...+..++..+...|++++|+..+++..... .|+ ...+..+..++
T Consensus 373 ~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l 451 (553)
T PRK12370 373 DIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFL 451 (553)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHH
Confidence 7889999999999999999999999864 33 2233444555777899999999999987653 343 44466677788
Q ss_pred HccCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCchh
Q 040371 153 SHCGLVEEGRKYFDHMRSRYSIQPQ-LEHYGAMVDLLGRAGHIEEAYGLITSM----TMEPDVVVWRALLSACRTFKRLE 227 (410)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~li~~~~~~g~~~ 227 (410)
...|+.++|...+..+... .|+ ....+.+...|...| ++|...++.+ ...|....+..++ ++-+|+.+
T Consensus 452 ~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~~~ 524 (553)
T PRK12370 452 SLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLV--LVAHGEAI 524 (553)
T ss_pred HhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHH--HHHHhhhH
Confidence 8999999999999987643 333 444556666677777 4666666555 3344444444444 45566666
Q ss_pred HHHHH
Q 040371 228 LGEVA 232 (410)
Q Consensus 228 ~a~~~ 232 (410)
.+..+
T Consensus 525 ~~~~~ 529 (553)
T PRK12370 525 AEKMW 529 (553)
T ss_pred HHHHH
Confidence 66655
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=9.4e-08 Score=87.40 Aligned_cols=252 Identities=12% Similarity=0.081 Sum_probs=169.9
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCC
Q 040371 14 GGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKI--ELNFILSAALIDMYSKCGK 91 (410)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~ 91 (410)
.+|....+.++++.=.+.....|.+-+...-+-...+.-...++++|+.+|+.+.+... --|..+|+.++-.-..+.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34444456666666666666666544443333333444556677777777777777621 1145566555432222222
Q ss_pred HH-HHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 040371 92 IQ-MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS 170 (410)
Q Consensus 92 ~~-~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 170 (410)
+. -|..+++ +.+--..|--++.+-|+-.++.++|...|++.++.+ +-....++.+..-|....+...|.+-++...+
T Consensus 315 Ls~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 315 LSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 21 1222221 122223445556667777888999999999888753 22345677777888888999999999988884
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHH---HhhccCCCchHH
Q 040371 171 RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGEVAI---VNISRLMGGDYV 245 (410)
Q Consensus 171 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~---~~~~~~~~~~~~ 245 (410)
-.+.|-..|-.|..+|.-.+...-|+-.|++. ..+| |...|.+|-..|.+.++.++|++.+ ......+...+.
T Consensus 393 --i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 393 --INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred --cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 23446678889999999999999999888887 6677 6788999999999999999999983 333344557888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 040371 246 LLSNMYCYLKRWDTAENVREIMKK 269 (410)
Q Consensus 246 ~l~~~~~~~g~~~~a~~~~~~m~~ 269 (410)
.|.+.|.+.++.++|.+.++.-.+
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999998887655
No 48
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.09 E-value=4.3e-07 Score=92.87 Aligned_cols=256 Identities=14% Similarity=0.015 Sum_probs=174.9
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 040371 11 SMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCG 90 (410)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 90 (410)
.++..+...|+.++|+..+++.... -+........+...+...|+++.|.++++.+++.. +.+..++..++..|.+.+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcC
Confidence 7788888889999998888887621 12223333444567788899999999999998875 445777778888999999
Q ss_pred CHHHHHHHHHhcccCChhhHHHHHHHHHH--cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHH----
Q 040371 91 KIQMAKEVFDTVQRNDVSVWNAMISGVAI--HGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEGRK---- 163 (410)
Q Consensus 91 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~---- 163 (410)
+.++|++.++++...+......+..+|.. .++..+|++.++++.+. .| +...+..+..+..+.|....|.+
T Consensus 151 q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 151 RGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred CHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 99999999998875443322224445544 45665699999999885 35 44455555566655444333333
Q ss_pred --------------------------------------------HHHHhhhhcCCCCCh-hH----HHHHHHHHHhcCCH
Q 040371 164 --------------------------------------------YFDHMRSRYSIQPQL-EH----YGAMVDLLGRAGHI 194 (410)
Q Consensus 164 --------------------------------------------~~~~m~~~~~~~~~~-~~----~~~li~~~~~~g~~ 194 (410)
-++.+....+-.|.. .. ..-.+-++...|++
T Consensus 229 ~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~ 308 (822)
T PRK14574 229 NPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQT 308 (822)
T ss_pred CccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhH
Confidence 333333222222321 11 12334467788999
Q ss_pred HHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCchhHHHHHHHhhccC---------CCchHHHHHHHHHhcCChhHHHH
Q 040371 195 EEAYGLITSMTMEP---DVVVWRALLSACRTFKRLELGEVAIVNISRL---------MGGDYVLLSNMYCYLKRWDTAEN 262 (410)
Q Consensus 195 ~~A~~~~~~m~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~ 262 (410)
.++.+.++.++..+ -..+-.++.++|...+.+++|+.++...... +......|..+|...+++++|..
T Consensus 309 ~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~ 388 (822)
T PRK14574 309 ADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQ 388 (822)
T ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHH
Confidence 99999999994222 3457778999999999999999995544221 11224678999999999999999
Q ss_pred HHHHHHhC
Q 040371 263 VREIMKKK 270 (410)
Q Consensus 263 ~~~~m~~~ 270 (410)
+++.+.+.
T Consensus 389 ~l~~~~~~ 396 (822)
T PRK14574 389 FAVNYSEQ 396 (822)
T ss_pred HHHHHHhc
Confidence 99999873
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.3e-07 Score=86.50 Aligned_cols=268 Identities=15% Similarity=0.114 Sum_probs=197.5
Q ss_pred HHHHcCCHhHHHHHHHHHHHCC-CC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 040371 15 GFVRNARFDEALRFFREMLSSK-VE-PDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKI 92 (410)
Q Consensus 15 ~~~~~g~~~~a~~l~~~m~~~g-~~-pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 92 (410)
++-.+.++++|+.+|+++.+.. .+ -|..||+.++-+-.....+.---+....+- +-.+.|...+.+-|+-.++-
T Consensus 271 ~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~id----KyR~ETCCiIaNYYSlr~eH 346 (559)
T KOG1155|consen 271 ASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNID----KYRPETCCIIANYYSLRSEH 346 (559)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhc----cCCccceeeehhHHHHHHhH
Confidence 3445689999999999998762 11 166789888865433222221111111111 22356777888899999999
Q ss_pred HHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 040371 93 QMAKEVFDTVQRN---DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169 (410)
Q Consensus 93 ~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 169 (410)
++|...|++..+- -...|+.|..-|....+...|++-++...+-. +.|-..|-.|.++|.-.+...-|+-+|+...
T Consensus 347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL 425 (559)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence 9999999987753 45689999999999999999999999998742 3478889999999999999999999999987
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHh----h--c-cCC
Q 040371 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM--TMEPDVVVWRALLSACRTFKRLELGEVAIVN----I--S-RLM 240 (410)
Q Consensus 170 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~----~--~-~~~ 240 (410)
. -.+-|...|.+|.+.|.+.+++++|.+-|++. .-..+...+..|...+-+.++.++|...+.+ . . ..+
T Consensus 426 ~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~ 503 (559)
T KOG1155|consen 426 E--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEID 503 (559)
T ss_pred h--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc
Confidence 3 33446899999999999999999999999987 2223557889999999999999999888221 1 1 111
Q ss_pred C---chHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHH
Q 040371 241 G---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTK 315 (410)
Q Consensus 241 ~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 315 (410)
+ .+-.-|..-+.+.+++++|......... | ....+++-.+++++.+.|.
T Consensus 504 ~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~-----------------------~---~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 504 DETIKARLFLAEYFKKMKDFDEASYYATLVLK-----------------------G---ETECEEAKALLREIRKIQA 555 (559)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc-----------------------C---CchHHHHHHHHHHHHHhcC
Confidence 2 2233467778899999999876543321 1 3467888888887765543
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.06 E-value=4.4e-07 Score=81.78 Aligned_cols=255 Identities=16% Similarity=0.095 Sum_probs=201.8
Q ss_pred HHHHHHH--cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 040371 12 MIGGFVR--NARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKC 89 (410)
Q Consensus 12 li~~~~~--~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 89 (410)
+..+..+ .|+|.+|..+..+-.+.+-.| ...|.....+.-..|+.+.+-..+.++.+..-.++..+.-+........
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 4444443 599999999999877665443 4567777788889999999999999999885577888888999999999
Q ss_pred CCHHHHHHHHHhcc---cCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCCHH
Q 040371 90 GKIQMAKEVFDTVQ---RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDS-------ITFLGLLTACSHCGLVE 159 (410)
Q Consensus 90 g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~ 159 (410)
|+++.|+.-.+++. .++.........+|.+.|++.+...+..+|.+.|+--|+ .++..++.-+...+..+
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999998877654 467889999999999999999999999999999876664 47788888888877777
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHH---HHh
Q 040371 160 EGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDVVVWRALLSACRTFKRLELGEVA---IVN 235 (410)
Q Consensus 160 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~---~~~ 235 (410)
.-...++.... ...-++..-.+++.-+.++|..++|.++.++. +..-|.. ...++ .+.+.++.+.-++. ..+
T Consensus 247 gL~~~W~~~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~-~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 247 GLKTWWKNQPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLI-PRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred HHHHHHHhccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHH-hhcCCCCchHHHHHHHHHHH
Confidence 77778887775 44556777788999999999999999988776 3233333 22222 34556666555555 556
Q ss_pred hccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 040371 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKG 271 (410)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 271 (410)
..|.++..+.+|...|.+.+.|.+|...|+...+.+
T Consensus 323 ~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 323 QHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 678899999999999999999999999999665544
No 51
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.94 E-value=4.1e-07 Score=82.98 Aligned_cols=209 Identities=13% Similarity=0.095 Sum_probs=128.1
Q ss_pred CHHHHHHHHHHHHHcC-CCc--cHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHH
Q 040371 56 ALNHAYWVHNLIIEKK-IEL--NFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAI 129 (410)
Q Consensus 56 ~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l 129 (410)
..+.+..-+.+++... ..| ....|..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|.+.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555555555432 122 234566677777778888888877776653 2456777777778888888888888
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CC
Q 040371 130 FTKMEMFNVLPD-SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM--TM 206 (410)
Q Consensus 130 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~ 206 (410)
|++..+. .|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...+++++|...|.+. ..
T Consensus 121 ~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 8777763 443 456666777777778888888888777643 343322222222334456778887777553 22
Q ss_pred CCCHHHHHHHHHHHHhcCchhHHHHH--HH-------hhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 040371 207 EPDVVVWRALLSACRTFKRLELGEVA--IV-------NISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGV 272 (410)
Q Consensus 207 ~p~~~~~~~li~~~~~~g~~~~a~~~--~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 272 (410)
.|+...| .+ .....|+...+..+ +. +..|.....|..+...|.+.|++++|...|++..+.+.
T Consensus 196 ~~~~~~~-~~--~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWGW-NI--VEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccHH-HH--HHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2332222 11 11224444333211 22 23344456789999999999999999999998876653
No 52
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=1.1e-07 Score=83.26 Aligned_cols=219 Identities=13% Similarity=0.005 Sum_probs=108.9
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc--C-ChhhHHHHHHHHHHcCCh
Q 040371 47 VIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR--N-DVSVWNAMISGVAIHGLA 123 (410)
Q Consensus 47 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~ 123 (410)
+..+|.++|.+..|...++..++. .|-+.+|--|-..|.+..+...|+.+|.+-.+ | |+.-..-+...+-..++.
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 344444444444444444444443 22333344444444444444444444444332 2 222222233334444444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 040371 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203 (410)
Q Consensus 124 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 203 (410)
++|.++|++..+.. ..+.....++...|.-.++.+-|+.++.++.. .|+. +...|+.+.-++...+++|-++--|.+
T Consensus 307 ~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 307 EDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHH-hcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 55555554444321 12333333444444444455555555554443 2332 334444444444444445444444443
Q ss_pred C---CCCCC--HHHHHHHHHHHHhcCchhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040371 204 M---TMEPD--VVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 204 m---~~~p~--~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 270 (410)
. -..|+ ...|-.+-......|++..|.+. ....++++...++.|.-.-.+.|++++|..++......
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 3 11122 23455555555666777777766 33445666778888888888999999999998877654
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=7.2e-07 Score=83.69 Aligned_cols=257 Identities=16% Similarity=0.073 Sum_probs=198.5
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM 85 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 85 (410)
+..--.-..-+...+++++.+++++...+. .+++...+..=|.++...|+-..-..+=..+++. .|....+|-++.--
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 333344455667789999999999998875 3666666666677888888876666555566665 46678899999999
Q ss_pred HHhcCCHHHHHHHHHhcccCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 040371 86 YSKCGKIQMAKEVFDTVQRND---VSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR 162 (410)
Q Consensus 86 y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 162 (410)
|.-.|+.++|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-..--+.-+.--|.+.+++..|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHH
Confidence 999999999999998766443 468999999999999999999988776553 1111222333455678899999999
Q ss_pred HHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCchhHHHHH
Q 040371 163 KYFDHMRSRYSIQP-QLEHYGAMVDLLGRAGHIEEAYGLITSMT--------MEP-DVVVWRALLSACRTFKRLELGEVA 232 (410)
Q Consensus 163 ~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p-~~~~~~~li~~~~~~g~~~~a~~~ 232 (410)
++|.+.. ++.| |+...+-+.-..-..+.+.+|..+|+..- ..+ -..+++.|-.+|++.+.+++|+..
T Consensus 401 ~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 401 KFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 9999987 5555 46667777666777888999999888761 111 345677788899999999999998
Q ss_pred ---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040371 233 ---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMK 268 (410)
Q Consensus 233 ---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 268 (410)
...+.|.+..+|.++.-.|...|+++.|.+.|.+-.
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 667889999999999999999999999999997643
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.92 E-value=1.1e-08 Score=99.95 Aligned_cols=208 Identities=11% Similarity=0.147 Sum_probs=118.4
Q ss_pred CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 040371 3 DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAAL 82 (410)
Q Consensus 3 ~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 82 (410)
.||-+||.++|.-|+..|+.+.|- +|.-|.-...+.+...|+.++......++.+.+. .|-..+|+.|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 478899999999999999999988 8888876555555555555555555555554443 4455555555
Q ss_pred HHHHHhcCCHHH---HHHHHHhccc-------------------------CChh----------hHHHHHHHH-------
Q 040371 83 IDMYSKCGKIQM---AKEVFDTVQR-------------------------NDVS----------VWNAMISGV------- 117 (410)
Q Consensus 83 i~~y~~~g~~~~---A~~~f~~m~~-------------------------~~~~----------~~~~li~~~------- 117 (410)
...|...|++.. .++-++.+.. ||.. .|..++...
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 555555555332 2221111100 0110 122222211
Q ss_pred --------HHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 040371 118 --------AIHG--LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDL 187 (410)
Q Consensus 118 --------~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~ 187 (410)
.++. ......++....+...-.|+..+|..++.+-..+|+++.|..++..|.++ |++.+..-+-.|+-+
T Consensus 170 ~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~-gfpir~HyFwpLl~g 248 (1088)
T KOG4318|consen 170 WNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK-GFPIRAHYFWPLLLG 248 (1088)
T ss_pred ccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc-CCCcccccchhhhhc
Confidence 1110 11111122211111111477778888888777888888888888888765 777776655555544
Q ss_pred HHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCch
Q 040371 188 LGRAGHIEEAYGLITSM---TMEPDVVVWRALLSACRTFKRL 226 (410)
Q Consensus 188 ~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~~g~~ 226 (410)
.+...-+..+++.| ++.|+..|+.-.+-.+..+|..
T Consensus 249 ---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 249 ---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred ---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence 45544444455444 7777777777666666665543
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.91 E-value=2.8e-06 Score=76.71 Aligned_cols=253 Identities=13% Similarity=0.086 Sum_probs=189.6
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM 85 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 85 (410)
+..|-.-..+--+.|+.+.+-..+.+.-+..-.++...+.+........|+++.|+.-...+.+.+ +.++.+.......
T Consensus 118 ~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~ 196 (400)
T COG3071 118 VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRA 196 (400)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHH
Confidence 456666677777889999999999988764335555666777778889999999999999998876 5678899999999
Q ss_pred HHhcCCHHHHHHHHHhcccCCh-----------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 040371 86 YSKCGKIQMAKEVFDTVQRNDV-----------SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154 (410)
Q Consensus 86 y~~~g~~~~A~~~f~~m~~~~~-----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 154 (410)
|.+.|++.....+...|.+..+ .+|+.++.-....+..+.-...|+..-.. .+-+...-.+++.-+..
T Consensus 197 y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~ 275 (400)
T COG3071 197 YIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIR 275 (400)
T ss_pred HHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHH
Confidence 9999999999999999986532 47888877666555555555555554433 45556667778888899
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH--HHhcCCHHHHHHH----HHhCCCCCCHHHHHHHHHHHHhcCchhH
Q 040371 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDL--LGRAGHIEEAYGL----ITSMTMEPDVVVWRALLSACRTFKRLEL 228 (410)
Q Consensus 155 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~----~~~m~~~p~~~~~~~li~~~~~~g~~~~ 228 (410)
+|+.++|.++..+..++ +..|+ |... ..+-++.+.-++. ...-|..| ..+.+|-..|.+++.+.+
T Consensus 276 l~~~~~A~~~i~~~Lk~-~~D~~------L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~k 346 (400)
T COG3071 276 LGDHDEAQEIIEDALKR-QWDPR------LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGK 346 (400)
T ss_pred cCChHHHHHHHHHHHHh-ccChh------HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHH
Confidence 99999999999998865 66555 2222 2334444443333 33334444 778888889999999999
Q ss_pred HHHHHHhh--ccCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040371 229 GEVAIVNI--SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKK 269 (410)
Q Consensus 229 a~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 269 (410)
|...+..- ..++...|..+..+|.+.|+.++|.+++++-..
T Consensus 347 A~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 347 ASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 99995433 234557899999999999999999999987653
No 56
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.86 E-value=2.3e-06 Score=78.08 Aligned_cols=211 Identities=11% Similarity=-0.033 Sum_probs=144.1
Q ss_pred HHHcCCHhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 040371 16 FVRNARFDEALRFFREMLSSK-VEPD--KFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKI 92 (410)
Q Consensus 16 ~~~~g~~~~a~~l~~~m~~~g-~~pd--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 92 (410)
...++..+.++.-+.+++... ..|+ ...|......+...|+.+.|...|.+.++.. +.+...|+.+...|...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH
Confidence 334567788888888888542 2332 3457777778889999999999999988875 45688899999999999999
Q ss_pred HHHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 040371 93 QMAKEVFDTVQR--N-DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169 (410)
Q Consensus 93 ~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 169 (410)
++|...|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|....
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999999998754 3 4567888888888899999999999988874 4543322222223445678999999997755
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCCHHHH--HHHHHhC-CC----CC-CHHHHHHHHHHHHhcCchhHHHHHHH
Q 040371 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEA--YGLITSM-TM----EP-DVVVWRALLSACRTFKRLELGEVAIV 234 (410)
Q Consensus 170 ~~~~~~~~~~~~~~li~~~~~~g~~~~A--~~~~~~m-~~----~p-~~~~~~~li~~~~~~g~~~~a~~~~~ 234 (410)
. ...|+...+ .++. ...|++.++ .+.+.+- .. .| ....|..+-..+...|++++|...+.
T Consensus 193 ~--~~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~ 260 (296)
T PRK11189 193 E--KLDKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFK 260 (296)
T ss_pred h--hCCccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3 223333222 2333 334554433 3222211 11 12 23578888888899999999999844
No 57
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.86 E-value=6e-06 Score=78.92 Aligned_cols=288 Identities=16% Similarity=0.130 Sum_probs=209.7
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcc--HHHHH
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFRE----MLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELN--FILSA 80 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~----m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~ 80 (410)
..|-+-..-=-++|+.+....+..+ +...|+..|...|..=..+|-..|..-.+..+....+..|+... -.+|+
T Consensus 441 ~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~ 520 (913)
T KOG0495|consen 441 EIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWL 520 (913)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHh
Confidence 4455444444556666666655543 23456677777777777777777777777777777776665432 45677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 040371 81 ALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL 157 (410)
Q Consensus 81 ~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 157 (410)
.-.+.+.+.+.++-|+.+|....+ .+...|...+..--.+|..++-..+|++.... ++-....+.......-..|+
T Consensus 521 ~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agd 599 (913)
T KOG0495|consen 521 DDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGD 599 (913)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCC
Confidence 777788888888888888877664 35677888777777789999999999998875 33355666666777778899
Q ss_pred HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHH---H
Q 040371 158 VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDVVVWRALLSACRTFKRLELGEVA---I 233 (410)
Q Consensus 158 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~---~ 233 (410)
+..|+.++.+..+. .+-+...|-+-+.....+.++++|..+|.+. ...|+...|.--+..-...++.++|.++ .
T Consensus 600 v~~ar~il~~af~~--~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~ 677 (913)
T KOG0495|consen 600 VPAARVILDQAFEA--NPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEA 677 (913)
T ss_pred cHHHHHHHHHHHHh--CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHH
Confidence 99999999998853 2336788999999999999999999999988 5678899998888888889999999999 4
Q ss_pred HhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCCcee--EEEECCEEEEEEeCCCCCccHHHHHHHHH
Q 040371 234 VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKS--WLELAGVIHQFKAGDRSHPEAQAIDKILG 308 (410)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (410)
.+..|.-...|..+...|.+.++++.|.+.+. .|.+.-|.+. |+++. .-....|+.-.|...|+
T Consensus 678 lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~----~G~k~cP~~ipLWllLa-------kleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 678 LKSFPDFHKLWLMLGQIEEQMENIEMAREAYL----QGTKKCPNSIPLWLLLA-------KLEEKDGQLVRARSILD 743 (913)
T ss_pred HHhCCchHHHHHHHhHHHHHHHHHHHHHHHHH----hccccCCCCchHHHHHH-------HHHHHhcchhhHHHHHH
Confidence 45567777788899999999999999998884 5666555433 54321 11222345555666655
No 58
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=2.1e-07 Score=81.61 Aligned_cols=221 Identities=11% Similarity=0.047 Sum_probs=169.7
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 040371 10 NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKC 89 (410)
Q Consensus 10 n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 89 (410)
+-|-.+|.+.|-+.+|...|+.-+.. .|-+.||..+-.+|.+..+.+.|..++..-++. ++-|+.........+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56778888899999998888887764 566778888888999999999998888887765 455666666777778888
Q ss_pred CCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 040371 90 GKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD 166 (410)
Q Consensus 90 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 166 (410)
++.++|.+++....+ .++.+..++..+|.-.++++-|+..|++++..|+. +...|+.+.-.|.-.+++|-+..-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 888999988887654 36667777788888889999999999999888865 66778888888888888998888888
Q ss_pred HhhhhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHh
Q 040371 167 HMRSRYSIQPQ--LEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGEVAIVN 235 (410)
Q Consensus 167 ~m~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~ 235 (410)
+...- --.|+ ..+|-.+-......|++.-|.+-|+-. .-.| +...++.|.-.-.+.|+++.|..++..
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 87642 22233 356777777777788888888888765 2233 456777777777888899888888443
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.82 E-value=6.1e-06 Score=72.57 Aligned_cols=267 Identities=10% Similarity=0.067 Sum_probs=187.7
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 040371 10 NSMIGGFVRNARFDEALRFFREMLSSK-VEPD--KFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMY 86 (410)
Q Consensus 10 n~li~~~~~~g~~~~a~~l~~~m~~~g-~~pd--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 86 (410)
-+|-+-|.+.|..+.|+.+-+.+.++. .+-+ ....-.+..-|...|-+|.|+.+|..+...| .--.....-|+..|
T Consensus 73 ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IY 151 (389)
T COG2956 73 LTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIY 151 (389)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHH
Confidence 357788889999999999999887642 1111 1234446677788999999999999998755 22355677889999
Q ss_pred HhcCCHHHHHHHHHhcccCChhhHHH--------HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCC
Q 040371 87 SKCGKIQMAKEVFDTVQRNDVSVWNA--------MISGVAIHGLAADASAIFTKMEMFNVLPDS-ITFLGLLTACSHCGL 157 (410)
Q Consensus 87 ~~~g~~~~A~~~f~~m~~~~~~~~~~--------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 157 (410)
-+..+|++|+.+-+++.+-+...|+. +...+....+.+.|..++.+..+.. |+. ..-..+.......|+
T Consensus 152 Q~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~ 229 (389)
T COG2956 152 QATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGD 229 (389)
T ss_pred HHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccc
Confidence 99999999999999877554444443 4445555788999999999988764 332 223345667788999
Q ss_pred HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHhh
Q 040371 158 VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDVVVWRALLSACRTFKRLELGEVAIVNI 236 (410)
Q Consensus 158 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 236 (410)
++.|.+.++.+.+. +..--..+...|..+|.+.|+.++...++.++ ...+....-..+-.--....-.+.|...+.+.
T Consensus 230 y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Q 308 (389)
T COG2956 230 YQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQ 308 (389)
T ss_pred hHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 99999999999865 44444677888999999999999999988877 44444444444444444444556666663322
Q ss_pred c--cCCCchHHHHHHHH---HhcCChhHHHHHHHHHHhCCCcCCCceeE
Q 040371 237 S--RLMGGDYVLLSNMY---CYLKRWDTAENVREIMKKKGVRKSQGKSW 280 (410)
Q Consensus 237 ~--~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 280 (410)
- .|+...+..|+..- +.-|++.+...+++.|....++..|....
T Consensus 309 l~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC 357 (389)
T COG2956 309 LRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRC 357 (389)
T ss_pred HhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCcee
Confidence 2 22334455566543 34466888888899998777766664443
No 60
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=6.7e-06 Score=75.81 Aligned_cols=299 Identities=14% Similarity=0.131 Sum_probs=209.1
Q ss_pred CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHc-CC-CccHHHHH
Q 040371 3 DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEK-KI-ELNFILSA 80 (410)
Q Consensus 3 ~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~ 80 (410)
.|+...|++.|.-=.+-...+.|..+|++..- +.|+..+|.-....=.+.|....++++|+.+++. |- ..+..+++
T Consensus 171 ~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfv 248 (677)
T KOG1915|consen 171 EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFV 248 (677)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 58888999999998888999999999988875 5688888888888888888888888888887764 21 11233445
Q ss_pred HHHHHHHhcCCHHHHHHHHHh----cccC-------------------------------------------ChhhHHHH
Q 040371 81 ALIDMYSKCGKIQMAKEVFDT----VQRN-------------------------------------------DVSVWNAM 113 (410)
Q Consensus 81 ~li~~y~~~g~~~~A~~~f~~----m~~~-------------------------------------------~~~~~~~l 113 (410)
+....=.++..++.|+-+|.- +++. |-.+|--.
T Consensus 249 aFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdy 328 (677)
T KOG1915|consen 249 AFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDY 328 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHH
Confidence 555544556666666666532 2211 23356666
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---HccCCHHHHHHHHHHhhhhcCCCCChhHHHH
Q 040371 114 ISGVAIHGLAADASAIFTKMEMFNVLPDS-------ITFLGLLTAC---SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183 (410)
Q Consensus 114 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 183 (410)
+..-...|+.+...++|++.... ++|-. ..|.-+=-+| ....+++.+.++++...+ -++...+|+.-
T Consensus 329 lrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaK 405 (677)
T KOG1915|consen 329 LRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAK 405 (677)
T ss_pred HHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHH
Confidence 66666778999999999988765 56632 1222221222 246788888888888874 45555667766
Q ss_pred HHHHHH----hcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHH---HHhhccCCCchHHHHHHHHHhcC
Q 040371 184 MVDLLG----RAGHIEEAYGLITSM-TMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLK 255 (410)
Q Consensus 184 li~~~~----~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g 255 (410)
+=-+|+ ++.++..|.+++... |.-|-..+|...|..=.+.++++....+ +.+..|.+..++.-....-...|
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lg 485 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLG 485 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhh
Confidence 665655 567888888888765 7788888898888888888899998888 77778888888888777788889
Q ss_pred ChhHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHH
Q 040371 256 RWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQR 313 (410)
Q Consensus 256 ~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 313 (410)
+++.|..+|+...+....--|-.-| .. .+.-....++.+.+.+++++++++
T Consensus 486 dtdRaRaifelAi~qp~ldmpellw---ka----YIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 486 DTDRARAIFELAISQPALDMPELLW---KA----YIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred hHHHHHHHHHHHhcCcccccHHHHH---HH----hhhhhhhcchHHHHHHHHHHHHHh
Confidence 9999999998877664322232333 11 223334567778888887766554
No 61
>PF12854 PPR_1: PPR repeat
Probab=98.81 E-value=8e-09 Score=60.34 Aligned_cols=33 Identities=33% Similarity=0.535 Sum_probs=26.7
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040371 71 KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103 (410)
Q Consensus 71 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 103 (410)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.78 E-value=1.5e-05 Score=77.45 Aligned_cols=300 Identities=15% Similarity=0.098 Sum_probs=191.6
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC---
Q 040371 14 GGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCG--- 90 (410)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--- 90 (410)
..+...|++++|++.+..-... +......+......+.++|+.++|..++..+++.+ +.|..-|..|..+..-..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 3457889999999999775432 44344566667788899999999999999999986 446666667766663322
Q ss_pred --CHHHHHHHHHhcccC----------------------------------Ch-hhHHHHHHHHHHcCChHHHHHHHHHH
Q 040371 91 --KIQMAKEVFDTVQRN----------------------------------DV-SVWNAMISGVAIHGLAADASAIFTKM 133 (410)
Q Consensus 91 --~~~~A~~~f~~m~~~----------------------------------~~-~~~~~li~~~~~~g~~~~A~~l~~~m 133 (410)
+.+...++|+++... ++ .+++.+-..|....+..-..+++...
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 456667777765321 22 34555555555445555555666655
Q ss_pred HHC----C----------CCCCH--HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHH
Q 040371 134 EMF----N----------VLPDS--ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ-LEHYGAMVDLLGRAGHIEE 196 (410)
Q Consensus 134 ~~~----g----------~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 196 (410)
... + -.|.. .++..+...|...|++++|..+.+...+. .|+ +..|..-...|-+.|++.+
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHH
Confidence 432 1 12333 24455677788999999999999998853 566 6788889999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHhhccCC--Cc--------hH--HHHHHHHHhcCChhHHHH
Q 040371 197 AYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGEVAIVNISRLM--GG--------DY--VLLSNMYCYLKRWDTAEN 262 (410)
Q Consensus 197 A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~--------~~--~~l~~~~~~~g~~~~a~~ 262 (410)
|.+.++.. ...+ |-..=+-....+.+.|++++|.+.+......+ +. .| .....+|.+.|++..|.+
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99988877 3333 55666667777889999999999933332222 11 12 235778999999999887
Q ss_pred HHHHHHhC--CCcCCC--ceeEEEECCEEE------EEEeCCCCCccHHHHHHHHHHHHHHHHHCC
Q 040371 263 VREIMKKK--GVRKSQ--GKSWLELAGVIH------QFKAGDRSHPEAQAIDKILGSLIQRTKSEG 318 (410)
Q Consensus 263 ~~~~m~~~--g~~~~~--~~s~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g 318 (410)
.|..+.+. .+.-+. -.+|..-...+. .+.....+|+..-+|....-++.-++-+..
T Consensus 327 ~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~ 392 (517)
T PF12569_consen 327 RFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKP 392 (517)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCc
Confidence 77655432 010000 001110000000 011223567777777777777666666554
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.78 E-value=5.6e-06 Score=69.50 Aligned_cols=195 Identities=12% Similarity=0.066 Sum_probs=147.0
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHH
Q 040371 43 TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAI 119 (410)
Q Consensus 43 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~ 119 (410)
+..-+.-.|...|+...|+.-++..++.. +.+..++..+...|.+.|+.+.|.+-|++..+ .+-...|.--.-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 45566777888899999999999998875 45677888888899999999999999987653 345566777777788
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 040371 120 HGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAY 198 (410)
Q Consensus 120 ~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 198 (410)
.|++++|...|++....-.-| -..||..+.-+..+.|+.+.|+.+|++..+. .+-...+.-.+.....+.|++..|.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHH
Confidence 889999999998887753222 2456777777777889999999999988752 2223556777888888899999998
Q ss_pred HHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHH---HHhhccCC
Q 040371 199 GLITSM--TMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240 (410)
Q Consensus 199 ~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~ 240 (410)
.++++. ...++..+.-..|.--...|+.+.+.+. +.+..|..
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 888877 3336777766777777888888888887 44555544
No 64
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.76 E-value=6.7e-06 Score=81.31 Aligned_cols=183 Identities=15% Similarity=0.147 Sum_probs=143.4
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 040371 18 RNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE 97 (410)
Q Consensus 18 ~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 97 (410)
..|+.++|.+++.+.++.. +-+...|-+|...+-..|+.+.+...+-.+.... +.|...|-.+.+...+.|.++.|+-
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 3499999999999999863 5578899999999999999999988776555543 5678999999999999999999999
Q ss_pred HHHhcccCChhhHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHccCCHHHHHHHHHHhh
Q 040371 98 VFDTVQRNDVSVWN---AMISGVAIHGLAADASAIFTKMEMFNVLPDS-----ITFLGLLTACSHCGLVEEGRKYFDHMR 169 (410)
Q Consensus 98 ~f~~m~~~~~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~ 169 (410)
.|.+..+.+..-|- --+..|-+.|+...|++.|.++..... |.. .+.-.++..+...+.-+.|.+.++...
T Consensus 229 cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99988765443333 345678899999999999999988632 322 233345667777888899999998887
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 040371 170 SRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203 (410)
Q Consensus 170 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 203 (410)
.+.+-..+...++.++..|.+...++.|...+..
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~ 341 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVD 341 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHH
Confidence 6555555667788888888888888887665543
No 65
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.73 E-value=1.5e-06 Score=89.19 Aligned_cols=206 Identities=12% Similarity=0.122 Sum_probs=167.5
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccC--------ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040371 64 HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN--------DVSVWNAMISGVAIHGLAADASAIFTKMEM 135 (410)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 135 (410)
|++.+... +-....|-..|......+++++|++++++.... -...|-++++.-...|.-+...++|++..+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 44444432 445778999999999999999999999987632 345788888888888988999999999877
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHH
Q 040371 136 FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP---DVV 211 (410)
Q Consensus 136 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~ 211 (410)
.- -....|..|...|.+.+..++|.++|+.|.++++ .....|...++.+.+..+-++|..++.+. ..-| ...
T Consensus 1526 yc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1526 YC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred hc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 42 1235588999999999999999999999999877 56778999999999999999999998876 2223 344
Q ss_pred HHHHHHHHHHhcCchhHHHHHHH---hhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcC
Q 040371 212 VWRALLSACRTFKRLELGEVAIV---NISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRK 274 (410)
Q Consensus 212 ~~~~li~~~~~~g~~~~a~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 274 (410)
...-.+..-.+.|+.+.|..++. .-.|.....|+..+++-.+.|..+.++.+|++....++.+
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 55556666689999999999944 4467778899999999999999999999999999988753
No 66
>PF12854 PPR_1: PPR repeat
Probab=98.71 E-value=2.4e-08 Score=58.29 Aligned_cols=32 Identities=28% Similarity=0.625 Sum_probs=25.5
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 173 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 67788888888888888888888888888777
No 67
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.70 E-value=2.6e-05 Score=74.74 Aligned_cols=252 Identities=15% Similarity=0.101 Sum_probs=144.4
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 040371 14 GGFVRNARFDEALRFFREMLSSKVEPD--KFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK 91 (410)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 91 (410)
-.|-..|..-.+..+....+.-|+.-. ..||..-...|.+.+.++-++.+|...++- ++.+..+|......=-.-|.
T Consensus 487 e~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt 565 (913)
T KOG0495|consen 487 EACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGT 565 (913)
T ss_pred HHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCc
Confidence 334444555555555555554443321 236666666666666677777777666665 34455666665555555566
Q ss_pred HHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 040371 92 IQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM 168 (410)
Q Consensus 92 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 168 (410)
.++-..+|++... ...+.|-....-+-..|+...|..++.+.-+.. +-+...+...+..-.....++.|+.+|...
T Consensus 566 ~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 566 RESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 6666666665542 233445555555555666666666666665542 124455555666666666666666666665
Q ss_pred hhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCchhHHHHHH---HhhccCCCch
Q 040371 169 RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDV-VVWRALLSACRTFKRLELGEVAI---VNISRLMGGD 243 (410)
Q Consensus 169 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~li~~~~~~g~~~~a~~~~---~~~~~~~~~~ 243 (410)
. +..|+..+|.--+...--.+..++|++++++. ..-|+- ..|..+-+.+-+.++++.|.... .+..|..+..
T Consensus 645 r---~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipL 721 (913)
T KOG0495|consen 645 R---SISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPL 721 (913)
T ss_pred h---ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchH
Confidence 4 34556666666666666666666666666554 333443 34555555566666666666662 2333555556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040371 244 YVLLSNMYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 244 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 270 (410)
|..|...-.+.|....|+.++++-+-+
T Consensus 722 WllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 722 WLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 666666666666666666666655444
No 68
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.69 E-value=3.3e-06 Score=84.07 Aligned_cols=262 Identities=11% Similarity=0.023 Sum_probs=185.9
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccH
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSS---KVEPDK------FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNF 76 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~---g~~pd~------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 76 (410)
+..-|.+.+-+...|.+++|...|...... ...+|. .+--.+....-..++.+.|.+.|..+++.. +.-+
T Consensus 452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YI 530 (1018)
T KOG2002|consen 452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYI 530 (1018)
T ss_pred HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhH
Confidence 456677778888888888888888877653 122333 122234444556678888888888887753 2223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcc---cCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 040371 77 ILSAALIDMYSKCGKIQMAKEVFDTVQ---RNDVSVWNAMISGVAIHGLAADASAIFTKMEMF-NVLPDSITFLGLLTAC 152 (410)
Q Consensus 77 ~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~ 152 (410)
..|--|.-+-...+...+|...+.... +.|...|+.+-..|.....+..|.+-|...... ...+|.++..+|.+.|
T Consensus 531 d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~ 610 (1018)
T KOG2002|consen 531 DAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVY 610 (1018)
T ss_pred HHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHH
Confidence 333333333333466778888887665 356778888888888888888888877766554 2347888888888866
Q ss_pred Hc------------cCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 040371 153 SH------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT--MEPDVVVWRALLS 218 (410)
Q Consensus 153 ~~------------~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~li~ 218 (410)
.. .+..++|.++|..+.+ .-+-|...-|-+.-.++..|++.+|.++|.... ..-+..+|..+..
T Consensus 611 ~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah 688 (1018)
T KOG2002|consen 611 IQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAH 688 (1018)
T ss_pred HHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHH
Confidence 53 3567889999998885 334466777778888999999999999999882 2225578889999
Q ss_pred HHHhcCchhHHHHH----HHhhc-cCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040371 219 ACRTFKRLELGEVA----IVNIS-RLMGGDYVLLSNMYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 219 ~~~~~g~~~~a~~~----~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 270 (410)
.|...|++..|.+. +.+.. ..++.+...|..++.+.|++.+|.+........
T Consensus 689 ~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 689 CYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999999999998 33333 334566778999999999999999988766554
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.68 E-value=1.6e-05 Score=66.88 Aligned_cols=192 Identities=12% Similarity=0.054 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 040371 8 SWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYS 87 (410)
Q Consensus 8 ~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 87 (410)
+.--|--+|.+.|+...|..-+++.++.. +-+..+|..+...|.+.|..+.|.+-|++.++.. +-+-.+.|.....++
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45667789999999999999999999853 3356699999999999999999999999999875 457789999999999
Q ss_pred hcCCHHHHHHHHHhcc-cCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 040371 88 KCGKIQMAKEVFDTVQ-RND----VSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR 162 (410)
Q Consensus 88 ~~g~~~~A~~~f~~m~-~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 162 (410)
..|++++|...|++.. .|+ ..+|..+.-+..+.|+.+.|.+.|++-.+.. +-...+...+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999999765 443 4588888888899999999999999998753 223567778888889999999999
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 163 KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 163 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
.+++..... ..++..+.-..|..--+.|+-+.+.+.=..+
T Consensus 194 ~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 194 LYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999998864 3478888777888888889888876554433
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=2.1e-05 Score=72.86 Aligned_cols=254 Identities=14% Similarity=0.113 Sum_probs=171.8
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHH
Q 040371 9 WNSMIGGFVRNARFDEALRFFREMLSSKVEPD-KFTFASVIYGCARLGALNHAYWVHNLIIEKKIELN-FILSAALIDMY 86 (410)
Q Consensus 9 ~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y 86 (410)
+-..-+-|.++|.+++|+..|.+.+. +.|| ++-|....-+|...|+++.+.+.--..++. .|+ +..+.--..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 44455667889999999999999887 4777 677888888888999998887766655553 333 33444444455
Q ss_pred HhcCCHHHHHH----------------------HHHh---------ccc---C---C-----------------------
Q 040371 87 SKCGKIQMAKE----------------------VFDT---------VQR---N---D----------------------- 106 (410)
Q Consensus 87 ~~~g~~~~A~~----------------------~f~~---------m~~---~---~----------------------- 106 (410)
-+.|++++|.. ++.. +.+ | .
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 55555555432 1110 110 0 0
Q ss_pred --------------------------------------hhhHH------------HHHH--HHHHcCChHHHHHHHHHHH
Q 040371 107 --------------------------------------VSVWN------------AMIS--GVAIHGLAADASAIFTKME 134 (410)
Q Consensus 107 --------------------------------------~~~~~------------~li~--~~~~~g~~~~A~~l~~~m~ 134 (410)
..++| .++. -+.-.|+.-.|.+-|+...
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 00011 0011 1223567777777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHH
Q 040371 135 MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVV 212 (410)
Q Consensus 135 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~ 212 (410)
.....++. .|.-+..+|....+.++.++.|+...+- -+-++.+|..-..++.-.+++++|..=|++. .+.| +...
T Consensus 354 ~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~l--dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~ 430 (606)
T KOG0547|consen 354 KLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDL--DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYA 430 (606)
T ss_pred hcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhc--CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHH
Confidence 65433332 2777778889999999999999998742 1224566766667777788999999999887 5666 3456
Q ss_pred HHHHHHHHHhcCchhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040371 213 WRALLSACRTFKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKK 269 (410)
Q Consensus 213 ~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 269 (410)
|.-+--+.-+.+.++++... ..+..|..+..|+....++...+++++|.+.++...+
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 66665565677788888887 4456688899999999999999999999999997765
No 71
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.67 E-value=2.3e-06 Score=77.23 Aligned_cols=144 Identities=13% Similarity=0.115 Sum_probs=74.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCH
Q 040371 83 IDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH----CGLV 158 (410)
Q Consensus 83 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~ 158 (410)
..+|...|++++|.+++.+- .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. ...+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhH
Confidence 34555566666666666554 34445555566666666666666666666543 222 333334343332 2346
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCch-hHHHHHH
Q 040371 159 EEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRL-ELGEVAI 233 (410)
Q Consensus 159 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~-~~a~~~~ 233 (410)
.+|..+|+++.++ ..+++.+.+.+..++...|++++|.+++.+. ...| |..+...++......|+. +.+.+.+
T Consensus 184 ~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 184 QDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 6666666666542 3445556666666666666666666665553 3333 334444555555555555 3344443
No 72
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=3.2e-05 Score=70.98 Aligned_cols=179 Identities=13% Similarity=0.132 Sum_probs=120.2
Q ss_pred cCCHHHHHHHHHhcccCChhhHHHHHH---HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 040371 89 CGKIQMAKEVFDTVQRNDVSVWNAMIS---GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYF 165 (410)
Q Consensus 89 ~g~~~~A~~~f~~m~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 165 (410)
.|++++|.+.+.+....|...-.+|.+ .+-..|+.++|++.|-++..- +.-+.....-+.+.|-...+..+|.+++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 456666666666666555443333222 244567777777777665432 2224455556666777777777888877
Q ss_pred HHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHh--hccCCC
Q 040371 166 DHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGEVAIVN--ISRLMG 241 (410)
Q Consensus 166 ~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~--~~~~~~ 241 (410)
.+... -++.|+...+.|.+.|-+.|+-.+|.+..-.- ..-| |..+...|..-|....-.+.++.++.+ +-.++.
T Consensus 582 ~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 582 MQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred HHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence 76652 45556788889999999999999888764433 3333 677777788888888888888888443 334455
Q ss_pred chHHHHH-HHHHhcCChhHHHHHHHHHHhC
Q 040371 242 GDYVLLS-NMYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 242 ~~~~~l~-~~~~~~g~~~~a~~~~~~m~~~ 270 (410)
.-|..++ +++-+.|++.+|.++++...++
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 6676665 4556789999999999988654
No 73
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=3.8e-05 Score=71.02 Aligned_cols=249 Identities=14% Similarity=0.055 Sum_probs=191.4
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 040371 18 RNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE 97 (410)
Q Consensus 18 ~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 97 (410)
.++++..|.++|++.+.-. .-+...|.--+.+=.+...+..|+.++++.+.. ++.-...|--.+.|=-..|++..|++
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 3566778999999988653 446667777777778899999999999999886 33344567777888888999999999
Q ss_pred HHHhcc--cCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCC
Q 040371 98 VFDTVQ--RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175 (410)
Q Consensus 98 ~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 175 (410)
+|++-. +|+..+|++.|.-=.+....+.|..++++..- +.|+..+|.-...-=-+.|++..+..+|....+..|-.
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 999865 79999999999999999999999999999987 56999999988888889999999999999998765532
Q ss_pred C-ChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCchhHHHHH-----------HHhhccC
Q 040371 176 P-QLEHYGAMVDLLGRAGHIEEAYGLITSM----TMEPDVVVWRALLSACRTFKRLELGEVA-----------IVNISRL 239 (410)
Q Consensus 176 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~li~~~~~~g~~~~a~~~-----------~~~~~~~ 239 (410)
. +...+.+...-=.++..++.|.-+|+-. |.......|..+..-=.+.|+....+.+ .....|.
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 1 1223444444444567788888777654 3222355666666666667776655555 2334566
Q ss_pred CCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040371 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 270 (410)
|..++.-.+..-...|+.+...+++++...+
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Confidence 7778888888888999999999999987654
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.63 E-value=0.00016 Score=67.86 Aligned_cols=307 Identities=9% Similarity=0.043 Sum_probs=186.8
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHCC-CCCCHHH-HHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHH---
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSSK-VEPDKFT-FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSA--- 80 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g-~~pd~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--- 80 (410)
...|..+...+...|+.+++...+.+..+.. ..++... .......+...|+++.+.++++...+.. +.|...++
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 4567777788888899999877777765432 1223322 2222344567899999999999998863 44554544
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 040371 81 ALIDMYSKCGKIQMAKEVFDTVQRND---VSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL 157 (410)
Q Consensus 81 ~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 157 (410)
.+.......|..+.+.+.++.....+ ...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 22222333566677777776533222 2344455567888999999999999998853 3345667788889999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC--CHHH-H-H--HHHHHHHhcCchhH
Q 040371 158 VEEGRKYFDHMRSRYSIQPQL--EHYGAMVDLLGRAGHIEEAYGLITSM-TMEP--DVVV-W-R--ALLSACRTFKRLEL 228 (410)
Q Consensus 158 ~~~a~~~~~~m~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p--~~~~-~-~--~li~~~~~~g~~~~ 228 (410)
+++|..+++...+.....|+. ..|..+...+...|++++|.+++++. ...| .... . + .++.-+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999987532222332 34557888999999999999999986 2233 2111 1 1 33444455565555
Q ss_pred HHHH--HHhh-c---cCCCchHH--HHHHHHHhcCChhHHHHHHHHHHhCCCcCC-CceeEEEECCEEEEEEeCCCCCcc
Q 040371 229 GEVA--IVNI-S---RLMGGDYV--LLSNMYCYLKRWDTAENVREIMKKKGVRKS-QGKSWLELAGVIHQFKAGDRSHPE 299 (410)
Q Consensus 229 a~~~--~~~~-~---~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~s~~~~~~~~~~~~~~~~~~~~ 299 (410)
+.+. +... . +.....+. ....++...|+.++|..+++.+........ .+..|..+...+- ........|+
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l-~A~~~~~~g~ 322 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLA-EALYAFAEGN 322 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHH-HHHHHHHcCC
Confidence 5554 2211 1 11111222 456677889999999999999876433210 0111111100000 0011234567
Q ss_pred HHHHHHHHHHHHHHHH
Q 040371 300 AQAIDKILGSLIQRTK 315 (410)
Q Consensus 300 ~~~~~~~l~~l~~~m~ 315 (410)
.+++...|.+......
T Consensus 323 ~~~A~~~L~~al~~a~ 338 (355)
T cd05804 323 YATALELLGPVRDDLA 338 (355)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777765554443
No 75
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.60 E-value=1.8e-06 Score=77.97 Aligned_cols=242 Identities=10% Similarity=0.012 Sum_probs=156.5
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH
Q 040371 14 GGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQ 93 (410)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 93 (410)
+-+.-.|++..++.-.+ .....-..+..+..-+.+++..+|..+.+. ..+.+.. .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44455788888887665 222221223445667778888899876543 3333333 566666655554444435556
Q ss_pred HHHHHHHhcc-cCC---hhhHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 040371 94 MAKEVFDTVQ-RND---VSVWNAM-ISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM 168 (410)
Q Consensus 94 ~A~~~f~~m~-~~~---~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 168 (410)
.+..-+++.. ++. -.++..+ ...|...|++++|++++++- .+.......+..+.+.+++|.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6665555433 221 1122222 23455679999999988642 35566777889999999999999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHH----hcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHH---HhhccC
Q 040371 169 RSRYSIQPQLEHYGAMVDLLG----RAGHIEEAYGLITSM--TMEPDVVVWRALLSACRTFKRLELGEVAI---VNISRL 239 (410)
Q Consensus 169 ~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~---~~~~~~ 239 (410)
.+ +..| .+...+..++. -.+.+.+|.-+|+++ ...++..+.+.+..+....|++++|+.++ ...+|.
T Consensus 158 ~~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQ---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HC---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hh---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 84 2334 33333444433 345799999999999 34578888899999999999999999993 445677
Q ss_pred CCchHHHHHHHHHhcCCh-hHHHHHHHHHHhC
Q 040371 240 MGGDYVLLSNMYCYLKRW-DTAENVREIMKKK 270 (410)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~ 270 (410)
++.+...++-+....|+. +.+.+.+.+++..
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 777888888888888988 6677888887764
No 76
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.60 E-value=2.2e-05 Score=78.32 Aligned_cols=270 Identities=14% Similarity=0.100 Sum_probs=131.5
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-C-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKV-E-PDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAAL 82 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~-~-pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 82 (410)
|++.-|.|-+-|.-.|++..++.+...+...-. . .-...|--+..++-..|+++.|...|....+..-..-+..+-.|
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 455556666666666666666666665554320 0 11234555666666666666666666555554322112333455
Q ss_pred HHHHHhcCCHHHHHHHHHhccc--C-ChhhHHHHHHHHHHc-------------------------------------CC
Q 040371 83 IDMYSKCGKIQMAKEVFDTVQR--N-DVSVWNAMISGVAIH-------------------------------------GL 122 (410)
Q Consensus 83 i~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~-------------------------------------g~ 122 (410)
..+|.+.|+++.|...|+.... | +..+-..+...|+.. ++
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d 428 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTD 428 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcC
Confidence 6666666666666666665542 1 222333333333333 22
Q ss_pred hHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC--CCCCh------hHHHHHHHHHHh
Q 040371 123 AADASAIFTKME----MFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS--IQPQL------EHYGAMVDLLGR 190 (410)
Q Consensus 123 ~~~A~~l~~~m~----~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~~~~------~~~~~li~~~~~ 190 (410)
+..++..|.... ..+..+.....+.+.......|+++.|...|.....+.. ..++. .+--.+...+-.
T Consensus 429 ~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~ 508 (1018)
T KOG2002|consen 429 PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEE 508 (1018)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHh
Confidence 222233333221 222334444455555555555555555555555443200 01111 111223333344
Q ss_pred cCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCchhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHH
Q 040371 191 AGHIEEAYGLITSM-TMEPDVV-VWRALLSACRTFKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVRE 265 (410)
Q Consensus 191 ~g~~~~A~~~~~~m-~~~p~~~-~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 265 (410)
.++++.|.+.++.+ ...|... .|.-+.......++..+|... ....+..++.....+.+.|.+...|..|.+-|.
T Consensus 509 l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~ 588 (1018)
T KOG2002|consen 509 LHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFE 588 (1018)
T ss_pred hhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHH
Confidence 44555555555554 2334322 222222222233444555554 444555667777777778888888888888777
Q ss_pred HHHhCCCcC
Q 040371 266 IMKKKGVRK 274 (410)
Q Consensus 266 ~m~~~g~~~ 274 (410)
...++-...
T Consensus 589 ~i~~~~~~~ 597 (1018)
T KOG2002|consen 589 TILKKTSTK 597 (1018)
T ss_pred HHHhhhccC
Confidence 665554333
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.59 E-value=7.9e-05 Score=70.03 Aligned_cols=256 Identities=12% Similarity=-0.017 Sum_probs=159.7
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 040371 13 IGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCAR----LGALNHAYWVHNLIIEKKIELNFILSAALIDMYSK 88 (410)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 88 (410)
...+...|++++|.+.+++..+.. +.|...+.. ...+.. .+..+.+.+.+.. .....+.+......+...+..
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHH
Confidence 345667899999999999988752 334444442 222222 3445555555544 111223334555667788999
Q ss_pred cCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHccCCHHHHH
Q 040371 89 CGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNV-LPDS--ITFLGLLTACSHCGLVEEGR 162 (410)
Q Consensus 89 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~ 162 (410)
.|++++|...+++..+ .+...+..+...|...|++++|...+++...... .|+. ..+..+...+...|+.++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999998764 3566788888999999999999999998876532 2332 24556788889999999999
Q ss_pred HHHHHhhhhcCCCCChhHH-H--HHHHHHHhcCCHHHHHHH---HHhC-CCCC---CHHHHHHHHHHHHhcCchhHHHHH
Q 040371 163 KYFDHMRSRYSIQPQLEHY-G--AMVDLLGRAGHIEEAYGL---ITSM-TMEP---DVVVWRALLSACRTFKRLELGEVA 232 (410)
Q Consensus 163 ~~~~~m~~~~~~~~~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m-~~~p---~~~~~~~li~~~~~~g~~~~a~~~ 232 (410)
.+++.........+..... + .++.-+...|..+.+.++ ...- +..| ..........++...|+.+.|..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 9999976321111222111 1 233334444533333332 1111 1101 122223566667888999999988
Q ss_pred HHhhcc---C---------CCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 040371 233 IVNISR---L---------MGGDYVLLSNMYCYLKRWDTAENVREIMKKKG 271 (410)
Q Consensus 233 ~~~~~~---~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 271 (410)
+..+.. . .........-++...|++++|.+.+......+
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 443322 1 11223344556779999999999998876543
No 78
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.58 E-value=1e-07 Score=56.35 Aligned_cols=35 Identities=43% Similarity=0.861 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDK 41 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~ 41 (410)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999983
No 79
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=7.6e-06 Score=75.73 Aligned_cols=211 Identities=16% Similarity=0.108 Sum_probs=164.0
Q ss_pred HhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHH
Q 040371 52 ARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASA 128 (410)
Q Consensus 52 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 128 (410)
.-.|+.-.+.+-|+..++.... +...|--+..+|+...+-++..+.|+.... .|..+|..-...+.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 4567888899999999887543 333366677789999999999999987763 356677777777777889999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 040371 129 IFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TM 206 (410)
Q Consensus 129 l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 206 (410)
=|++.+. +.| +...|.-+-.+..+.+.+++++..|++..++ ++.-+..|+-....+...++++.|.+.|+.. .+
T Consensus 416 DF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 416 DFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999887 455 4566777777777899999999999999975 4445778998999999999999999999876 44
Q ss_pred CCC---------HHHHHHHHHHHHhcCchhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040371 207 EPD---------VVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMK 268 (410)
Q Consensus 207 ~p~---------~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 268 (410)
+|+ ..+-.+++-. .=.+++..|..+ ..+++|.....|..|...-.+.|+.++|.++|++-.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 443 1222222222 223888999998 566778777899999999999999999999998643
No 80
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.4e-05 Score=73.70 Aligned_cols=208 Identities=15% Similarity=0.110 Sum_probs=102.9
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCC-ccHHHHHHHH
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPD-KFTFASVIYGCARLGALNHAYWVHNLIIEKKIE-LNFILSAALI 83 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li 83 (410)
.+||-++-..|.-.|+..+|.+.|.+...- .|. ...|.....+++..+.-|+|...+..+-+.=.. .-+..|. .
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYl--g 387 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYL--G 387 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHH--H
Confidence 345555555555555555555555554321 111 234555555555555555555555544443100 0111121 1
Q ss_pred HHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CC---CC-CHHHHHHHHHHHHc
Q 040371 84 DMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMF--NV---LP-DSITFLGLLTACSH 154 (410)
Q Consensus 84 ~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~---~p-~~~t~~~ll~a~~~ 154 (410)
-=|.+.++++.|.++|.+... .|+...+-+.-.....+.+.+|..+|+..+.. .+ ++ -..+++.|..+|.+
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 234455555566655554431 24445555544444455566666666554421 00 11 22345555566666
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 040371 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDVVVWRALLSA 219 (410)
Q Consensus 155 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~ 219 (410)
.+.+++|...|+.... -.+.+..++.++.-.|...|+++.|.+.|.+. .++||..+...+++.
T Consensus 468 l~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred HhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 6666666666665553 22334555556555566666666666655554 555555555555543
No 81
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.47 E-value=2.8e-07 Score=54.35 Aligned_cols=35 Identities=26% Similarity=0.455 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 040371 108 SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDS 142 (410)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 142 (410)
.+||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 82
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.46 E-value=3.2e-05 Score=68.12 Aligned_cols=180 Identities=12% Similarity=0.017 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCC-cc-HHHHH
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDK---FTFASVIYGCARLGALNHAYWVHNLIIEKKIE-LN-FILSA 80 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~---~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~-~~~~~ 80 (410)
...+-.+...|.+.|++++|...|++..... +.+. .++..+..++...|+++.|...++.+++.... +. ..++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4455566666677777777777777666532 1111 34555666666777777777777777654321 11 11334
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHhcccC--Ch-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040371 81 ALIDMYSKC--------GKIQMAKEVFDTVQRN--DV-SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149 (410)
Q Consensus 81 ~li~~y~~~--------g~~~~A~~~f~~m~~~--~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 149 (410)
.+...|.+. |+.++|.+.|+++... +. ..+.++..... ..... . .....+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~~-------------~-~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNRL-------------A-GKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHHH-------------H-HHHHHHH
Confidence 444444443 5566666666665432 11 12211111000 00000 0 0012345
Q ss_pred HHHHccCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 150 TACSHCGLVEEGRKYFDHMRSRYSIQP-QLEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 150 ~a~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
..+.+.|++++|...++...+.+.-.| ....+..+..+|.+.|++++|...++.+
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 667888888888888888876533223 3567888888888888888888888776
No 83
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.46 E-value=3.4e-07 Score=53.69 Aligned_cols=34 Identities=29% Similarity=0.527 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEP 39 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p 39 (410)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999887
No 84
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=0.00017 Score=62.94 Aligned_cols=251 Identities=15% Similarity=0.094 Sum_probs=163.1
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHH-HHHHH
Q 040371 9 WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAAL-IDMYS 87 (410)
Q Consensus 9 ~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~y~ 87 (410)
+++.+..+.+..++.+|++++..-.+.. +-+....+.+..+|-...++..|-.-++++-..- |...-|... .....
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 5667777778888999999887766652 2266777777788888888888888887776542 222222110 11223
Q ss_pred hcCCHHHHHHHH----------------------------------Hhcc-cCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 040371 88 KCGKIQMAKEVF----------------------------------DTVQ-RNDVSVWNAMISGVAIHGLAADASAIFTK 132 (410)
Q Consensus 88 ~~g~~~~A~~~f----------------------------------~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 132 (410)
+.+.+.+|.++. ++.+ +.+..+.+.......+.|++++|++-|+.
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 334444444444 4433 22334444444556678999999999998
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCC-------------CCh--------hHHHHHHHH---
Q 040371 133 MEMF-NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ-------------PQL--------EHYGAMVDL--- 187 (410)
Q Consensus 133 m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-------------~~~--------~~~~~li~~--- 187 (410)
..+- |.. ....|+..+. ..+.|+.+.|.++..++.++ |+. ||+ -+-+.++.+
T Consensus 170 AlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 170 ALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 8775 444 4567776654 45568999999999988865 543 221 123444443
Q ss_pred ----HHhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCchhHH---HHHHHhhccCCCchHHHHHHHHHhcCC
Q 040371 188 ----LGRAGHIEEAYGLITSMTM----EPDVVVWRALLSACRTFKRLELG---EVAIVNISRLMGGDYVLLSNMYCYLKR 256 (410)
Q Consensus 188 ----~~~~g~~~~A~~~~~~m~~----~p~~~~~~~li~~~~~~g~~~~a---~~~~~~~~~~~~~~~~~l~~~~~~~g~ 256 (410)
+.+.|+++.|.+-+-.||- +.|.+|...+.-.= ..+++..+ .+.+.+..|..+.+|..++-.|++..-
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHH
Confidence 5578999999999999952 24666654433221 12223222 233777788888999999999999999
Q ss_pred hhHHHHHHHH
Q 040371 257 WDTAENVREI 266 (410)
Q Consensus 257 ~~~a~~~~~~ 266 (410)
++-|..++-+
T Consensus 326 f~lAADvLAE 335 (459)
T KOG4340|consen 326 FDLAADVLAE 335 (459)
T ss_pred HhHHHHHHhh
Confidence 9999988754
No 85
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.42 E-value=7.5e-05 Score=77.27 Aligned_cols=225 Identities=12% Similarity=0.141 Sum_probs=164.3
Q ss_pred CCC-hhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccH
Q 040371 3 DKD-VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPD-----KFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNF 76 (410)
Q Consensus 3 ~~~-~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd-----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 76 (410)
.|| .+.|-..|+-..+.+..++|.+++++.+.. +.+. ...|.++++.-..-|.-+...++|+++.+.. .-.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~ 1530 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAY 1530 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chH
Confidence 344 356888899999999999999999988764 3222 2357777777677777888889999988864 235
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHH
Q 040371 77 ILSAALIDMYSKCGKIQMAKEVFDTVQRN---DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF-LGLLTAC 152 (410)
Q Consensus 77 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~ 152 (410)
.+|..|...|.+.++.++|-++|+.|.++ ....|...+..+.++.+.++|..++.+.++.=.+-..+-+ .-.+..-
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 67889999999999999999999999754 5568998999999999889999999888774222123322 2333444
Q ss_pred HccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCC--CHHHHHHHHHHHHhcCchh
Q 040371 153 SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM---TMEP--DVVVWRALLSACRTFKRLE 227 (410)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p--~~~~~~~li~~~~~~g~~~ 227 (410)
.+.|+.+.|+.+|+..... .+-....|+..|++-.+.|..+.+.++|++. ++.| --..|...+.-=..+|+-+
T Consensus 1611 Fk~GDaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred hhcCCchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 5789999999999988854 2335678999999999999999999999987 3333 2345555555555666655
Q ss_pred HHHHH
Q 040371 228 LGEVA 232 (410)
Q Consensus 228 ~a~~~ 232 (410)
.++.+
T Consensus 1689 ~vE~V 1693 (1710)
T KOG1070|consen 1689 NVEYV 1693 (1710)
T ss_pred hHHHH
Confidence 55444
No 86
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=1.3e-05 Score=75.77 Aligned_cols=214 Identities=12% Similarity=0.018 Sum_probs=167.5
Q ss_pred HhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHH
Q 040371 52 ARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN---DVSVWNAMISGVAIHGLAADASA 128 (410)
Q Consensus 52 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~ 128 (410)
.+.|++..|.-.|+..++.. +.+...|.-|....+..++-..|+..+.+..+- |....-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 57788889988999888875 557888999988889888888898888877643 56677777778888999999999
Q ss_pred HHHHHHHCCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 040371 129 IFTKMEMFNVL--------PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL 200 (410)
Q Consensus 129 l~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 200 (410)
.++.-.....+ ++..+-.. ........+....++|-.+....+.++|..++..|.-.|--.|.+++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 99887654211 01000000 122223345566677777766557668888999999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040371 201 ITSM-TMEP-DVVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMK 268 (410)
Q Consensus 201 ~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 268 (410)
|+.. .++| |..+||-|-..++...+.++|..+ ..++.|.-..+...|.-.|...|.+++|.+.|-...
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9987 7788 678999999999999999999999 778889888888899999999999999999876543
No 87
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=0.0011 Score=60.51 Aligned_cols=180 Identities=11% Similarity=0.012 Sum_probs=96.1
Q ss_pred HHHHHH--cCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHH-HHHHHHHHHh
Q 040371 13 IGGFVR--NARFDEALRFFREMLSS-KVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFIL-SAALIDMYSK 88 (410)
Q Consensus 13 i~~~~~--~g~~~~a~~l~~~m~~~-g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~~ 88 (410)
|.+|++ .++...|..+|--.... -++-|......+...+...|+.+++.-.|+..... .|+... -....-.+.+
T Consensus 201 ika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~ 278 (564)
T KOG1174|consen 201 IKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQ 278 (564)
T ss_pred HHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHh
Confidence 444443 44444555544433332 24556667777888888888888888888877654 232211 1111222345
Q ss_pred cCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHH
Q 040371 89 CGKIQMAKEVFDTVQRN---DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEGRKY 164 (410)
Q Consensus 89 ~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 164 (410)
.|+++....+-..+-.. ....|-.-.......++++.|+.+-++-.+. .| +...|..-..++...|+.++|.-.
T Consensus 279 eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~~~R~~~A~Ia 356 (564)
T KOG1174|consen 279 EGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIALERHTQAVIA 356 (564)
T ss_pred ccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHhccchHHHHHH
Confidence 66666665555544322 2334444444444555666666666555442 22 223333334455556666666666
Q ss_pred HHHhhhhcCCC-CChhHHHHHHHHHHhcCCHHHHHH
Q 040371 165 FDHMRSRYSIQ-PQLEHYGAMVDLLGRAGHIEEAYG 199 (410)
Q Consensus 165 ~~~m~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~ 199 (410)
|.... .+. .+...|.-|+..|...|++.||.-
T Consensus 357 FR~Aq---~Lap~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 357 FRTAQ---MLAPYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred HHHHH---hcchhhHHHHHHHHHHHHhhchHHHHHH
Confidence 66554 222 245566666666666666666543
No 88
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.32 E-value=1.1e-06 Score=51.53 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 040371 108 SVWNAMISGVAIHGLAADASAIFTKMEMFNVLP 140 (410)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 140 (410)
.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.27 E-value=0.00013 Score=64.28 Aligned_cols=176 Identities=12% Similarity=-0.008 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCC-c-cHHHHHHHHHHHHhcCCHHHHHHHHHhccc--CC-hh---hHH
Q 040371 40 DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIE-L-NFILSAALIDMYSKCGKIQMAKEVFDTVQR--ND-VS---VWN 111 (410)
Q Consensus 40 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~-~~---~~~ 111 (410)
....+......+...|+++.|...++.+.+.... | ....+..+...|.+.|++++|...|+++.+ |+ .. +|.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3456666777777888888888888887765311 1 124566777788888888888888887753 21 11 344
Q ss_pred HHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHH
Q 040371 112 AMISGVAIH--------GLAADASAIFTKMEMFNVLPDSI-TFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182 (410)
Q Consensus 112 ~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 182 (410)
.+..++.+. |+.++|.+.|+++... .|+.. ....+... . .. ..... ....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~---~~------~~~~~---------~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-D---YL------RNRLA---------GKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-H---HH------HHHHH---------HHHH
Confidence 444455443 6677778777777654 33321 11111110 0 00 00000 1123
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHhh
Q 040371 183 AMVDLLGRAGHIEEAYGLITSM----TMEP-DVVVWRALLSACRTFKRLELGEVAIVNI 236 (410)
Q Consensus 183 ~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~ 236 (410)
.+...|.+.|++++|...+++. +-.| ....|..+..++...|++++|...+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5667899999999999998887 2233 3568889999999999999999985544
No 90
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.26 E-value=5.3e-05 Score=70.92 Aligned_cols=128 Identities=14% Similarity=0.062 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 040371 77 ILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156 (410)
Q Consensus 77 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 156 (410)
..-.+|+..+...++++.|..+|+++.+.+...+..++..+...++..+|++++++.... .+-|...+..-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 344566777778899999999999999888777778889998899999999999998864 2335555666667788999
Q ss_pred CHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 040371 157 LVEEGRKYFDHMRSRYSIQPQ-LEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208 (410)
Q Consensus 157 ~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 208 (410)
+.+.|..+.+++.. ..|+ ..+|..|...|.+.|++++|+..++.+|+.|
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999999984 3555 5699999999999999999999999997655
No 91
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.25 E-value=1.2e-06 Score=50.03 Aligned_cols=31 Identities=39% Similarity=0.763 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFREMLSSKV 37 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~ 37 (410)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5899999999999999999999999998774
No 92
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=0.00011 Score=71.54 Aligned_cols=217 Identities=17% Similarity=0.158 Sum_probs=165.1
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040371 71 KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150 (410)
Q Consensus 71 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 150 (410)
+++|-...-..+.+.+.++|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+-.+ -+||...|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 45666667778899999999999999999986 5688899999999999999999988776 5789999999999
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhH
Q 040371 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLEL 228 (410)
Q Consensus 151 a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~ 228 (410)
......-+++|+++++....+ .-..+.....+.++++++.+.|+.- .+.| -..+|-.+-.+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 988888899999999886643 1111222233478899998888764 5555 46788777777788888888
Q ss_pred HHHH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCccHHHHHH
Q 040371 229 GEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDK 305 (410)
Q Consensus 229 a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (410)
|.+. -..++|++...|+.+..+|.+.|+-.+|...+++..+-+.. +|..+.+.. +++ ..-|+.+++..
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-----~w~iWENym--lvs--vdvge~eda~~ 608 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-----HWQIWENYM--LVS--VDVGEFEDAIK 608 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-----CCeeeechh--hhh--hhcccHHHHHH
Confidence 8888 45678999999999999999999999999999988776632 344333322 111 23456677776
Q ss_pred HHHHHH
Q 040371 306 ILGSLI 311 (410)
Q Consensus 306 ~l~~l~ 311 (410)
...++.
T Consensus 609 A~~rll 614 (777)
T KOG1128|consen 609 AYHRLL 614 (777)
T ss_pred HHHHHH
Confidence 666543
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.24 E-value=0.0008 Score=65.57 Aligned_cols=256 Identities=10% Similarity=0.043 Sum_probs=165.5
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCC--hh-hHHHHHHHHHHc----
Q 040371 48 IYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRND--VS-VWNAMISGVAIH---- 120 (410)
Q Consensus 48 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~--~~-~~~~li~~~~~~---- 120 (410)
...+...|++++|.+.+..-.+. +.....+.......|.+.|+.++|..+|..+.++| -. -|..+..+....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 34567889999999999775554 33456777888999999999999999999998543 33 344444444222
Q ss_pred -CChHHHHHHHHHHHHCCCC---C--------CH--------------------HHHHHHHHHHHccCCHHHHHHHHHHh
Q 040371 121 -GLAADASAIFTKMEMFNVL---P--------DS--------------------ITFLGLLTACSHCGLVEEGRKYFDHM 168 (410)
Q Consensus 121 -g~~~~A~~l~~~m~~~g~~---p--------~~--------------------~t~~~ll~a~~~~g~~~~a~~~~~~m 168 (410)
...+...++|+++...-.+ | +. .+|+.|-..|......+-..+++...
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 2456666777766443100 0 11 23333333334344444444454444
Q ss_pred hhhc-------------CCCCChhHH--HHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHH
Q 040371 169 RSRY-------------SIQPQLEHY--GAMVDLLGRAGHIEEAYGLITSM-TMEPD-VVVWRALLSACRTFKRLELGEV 231 (410)
Q Consensus 169 ~~~~-------------~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~ 231 (410)
.... .-.|+...| .-+...|-..|++++|++.+++. ...|+ +..|..-...+...|++++|..
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~ 249 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAE 249 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 3211 112444334 55567788999999999999976 56676 5677777788999999999999
Q ss_pred H---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCC-----ceeEEEECCEEEEEEeCCCCCccHHHH
Q 040371 232 A---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQ-----GKSWLELAGVIHQFKAGDRSHPEAQAI 303 (410)
Q Consensus 232 ~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~-----~~s~~~~~~~~~~~~~~~~~~~~~~~~ 303 (410)
. ...+++.|...-+-.+..+.++|++++|.+++....+.+..|.. .+.|.++.. ..++...|....|
T Consensus 250 ~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~-----a~a~~r~~~~~~A 324 (517)
T PF12569_consen 250 AMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETEC-----AEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHH-----HHHHHHHhhHHHH
Confidence 8 66777777666677888889999999999999988877763332 234643211 1223334555555
Q ss_pred HHHHHH
Q 040371 304 DKILGS 309 (410)
Q Consensus 304 ~~~l~~ 309 (410)
+..+..
T Consensus 325 Lk~~~~ 330 (517)
T PF12569_consen 325 LKRFHA 330 (517)
T ss_pred HHHHHH
Confidence 555543
No 94
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.23 E-value=6.3e-05 Score=64.13 Aligned_cols=159 Identities=9% Similarity=0.102 Sum_probs=116.4
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 040371 12 MIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK 91 (410)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 91 (410)
-+..|.+.|++..+..-.+.+.. |. . .+...++.+++...++..++.. +.|...|..|...|...|+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
Confidence 34678899999887544433221 11 0 1123566777777788777765 6688999999999999999
Q ss_pred HHHHHHHHHhccc---CChhhHHHHHHH-HHHcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 040371 92 IQMAKEVFDTVQR---NDVSVWNAMISG-VAIHGL--AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYF 165 (410)
Q Consensus 92 ~~~A~~~f~~m~~---~~~~~~~~li~~-~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 165 (410)
+++|...|++... .+...|..+..+ |.+.|+ .++|.+++++..+... -+...+..+..++...|++++|...|
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998763 366788887776 467777 5999999999988532 25667788888889999999999999
Q ss_pred HHhhhhcCCCCChhHHHHHHHH
Q 040371 166 DHMRSRYSIQPQLEHYGAMVDL 187 (410)
Q Consensus 166 ~~m~~~~~~~~~~~~~~~li~~ 187 (410)
+.+.+ ..+|+..-+ .+|..
T Consensus 168 ~~aL~--l~~~~~~r~-~~i~~ 186 (198)
T PRK10370 168 QKVLD--LNSPRVNRT-QLVES 186 (198)
T ss_pred HHHHh--hCCCCccHH-HHHHH
Confidence 99985 455555444 44454
No 95
>PLN02789 farnesyltranstransferase
Probab=98.20 E-value=0.00091 Score=61.35 Aligned_cols=143 Identities=10% Similarity=0.042 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhhC-CHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 040371 8 SWNSMIGGFVRNARFDEALRFFREMLSSKVEPD-KFTFASVIYGCARLG-ALNHAYWVHNLIIEKKIELNFILSAALIDM 85 (410)
Q Consensus 8 ~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 85 (410)
+++.+-..+...++.++|+.+..++++. .|+ ..+|+.--.++...+ +++++...++.+++.. +.+..+|+..--.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 4555556666677777777777777763 343 335555555555555 4677777777777664 3455566655555
Q ss_pred HHhcCCH--HHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 040371 86 YSKCGKI--QMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154 (410)
Q Consensus 86 y~~~g~~--~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 154 (410)
+.+.|+. +++..+++++.+ +|..+|+-..-.+...|+++++++.++++.+.+.. |...|+.....+.+
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~ 188 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITR 188 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHh
Confidence 5555552 455666665543 35566776666666677777777777777665432 33444444444433
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=0.00018 Score=68.17 Aligned_cols=213 Identities=15% Similarity=0.116 Sum_probs=165.0
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 040371 15 GFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQM 94 (410)
Q Consensus 15 ~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 94 (410)
-+.++|++.+|.-.|+...+.. +-+...|--|..+-+..++=..|+..+.+.++.. +.+..+.-+|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 4678999999999999988764 4467799999999999999999999999999875 4478888899999999999999
Q ss_pred HHHHHHhcccCC-hhhHHHHH---------HHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 040371 95 AKEVFDTVQRND-VSVWNAMI---------SGVAIHGLAADASAIFTKMEM-FNVLPDSITFLGLLTACSHCGLVEEGRK 163 (410)
Q Consensus 95 A~~~f~~m~~~~-~~~~~~li---------~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 163 (410)
|.+.|+.-.... ...|...- ..+..........++|-++.. .+.++|......|--.|.-.|.+++|..
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999998753110 00000000 122222334566677766654 3545777777778888888999999999
Q ss_pred HHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCchhHHHHH
Q 040371 164 YFDHMRSRYSIQPQ-LEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDV-VVWRALLSACRTFKRLELGEVA 232 (410)
Q Consensus 164 ~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~li~~~~~~g~~~~a~~~ 232 (410)
.|+.+.. +.|+ ...||.|...++...+.++|..-|.+. .++|+- ..+..|--+|...|.+++|.+.
T Consensus 452 cf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 452 CFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 9999884 4565 679999999999999999999999987 788874 4666677788999999999988
No 97
>PLN02789 farnesyltranstransferase
Probab=98.18 E-value=0.0024 Score=58.57 Aligned_cols=213 Identities=10% Similarity=0.036 Sum_probs=150.8
Q ss_pred HhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHhccc---CChhhHHHHHHHHHHcCCh--HH
Q 040371 52 ARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCG-KIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLA--AD 125 (410)
Q Consensus 52 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~--~~ 125 (410)
...+..++|..+...+++.. +-+..+|+..-.++.+.| ++++++..++++.+ ++..+|+-.--.+.+.|.. ++
T Consensus 48 ~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 34466778888888888864 445677887777778888 58999999998774 3556788665556666653 67
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhc---CCH----HHHH
Q 040371 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRA---GHI----EEAY 198 (410)
Q Consensus 126 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~---g~~----~~A~ 198 (410)
++++++++.+.. .-|..++....-++.+.|.++++.+.++.+.+. . ..+...|+.....+.+. |.+ +++.
T Consensus 127 el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 127 ELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 899999998754 236788888888888999999999999999864 3 33566777666555544 323 4566
Q ss_pred HHHHh-CCCCC-CHHHHHHHHHHHHhcC----chhHHHHH---HHhhccCCCchHHHHHHHHHhcC--------------
Q 040371 199 GLITS-MTMEP-DVVVWRALLSACRTFK----RLELGEVA---IVNISRLMGGDYVLLSNMYCYLK-------------- 255 (410)
Q Consensus 199 ~~~~~-m~~~p-~~~~~~~li~~~~~~g----~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g-------------- 255 (410)
+...+ +...| |...|+-+-..+...+ ...+|... +....+.++.....|++.|+...
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~ 283 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLA 283 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccc
Confidence 66644 45566 5678888888877633 34556666 33445666667778999998643
Q ss_pred ----ChhHHHHHHHHHH
Q 040371 256 ----RWDTAENVREIMK 268 (410)
Q Consensus 256 ----~~~~a~~~~~~m~ 268 (410)
..++|.++++.+.
T Consensus 284 ~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 284 EELSDSTLAQAVCSELE 300 (320)
T ss_pred cccccHHHHHHHHHHHH
Confidence 3467999999884
No 98
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.17 E-value=0.00037 Score=59.41 Aligned_cols=157 Identities=8% Similarity=0.009 Sum_probs=109.7
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCC
Q 040371 46 SVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGL 122 (410)
Q Consensus 46 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~ 122 (410)
..+..|...|+++.+....+.+.. |. .-|...++.+++...++...+ .|...|..+...|...|+
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Confidence 344567788888877555433221 10 022236667777777776553 477899999999999999
Q ss_pred hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-HccCC--HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 040371 123 AADASAIFTKMEMFNVLP-DSITFLGLLTAC-SHCGL--VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAY 198 (410)
Q Consensus 123 ~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~-~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 198 (410)
+++|...|++..+. .| |...+..+..++ ...|+ .++|.+++++..+. -+-+...+..+...+.+.|++++|.
T Consensus 89 ~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai 164 (198)
T PRK10370 89 YDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAI 164 (198)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHH
Confidence 99999999988875 34 556666666653 66676 59999999998853 2335678888888999999999999
Q ss_pred HHHHhC-C-CCCCHHHHHHHHHH
Q 040371 199 GLITSM-T-MEPDVVVWRALLSA 219 (410)
Q Consensus 199 ~~~~~m-~-~~p~~~~~~~li~~ 219 (410)
..|+++ . ..|+.. ...+|.+
T Consensus 165 ~~~~~aL~l~~~~~~-r~~~i~~ 186 (198)
T PRK10370 165 ELWQKVLDLNSPRVN-RTQLVES 186 (198)
T ss_pred HHHHHHHhhCCCCcc-HHHHHHH
Confidence 999998 3 334443 3344444
No 99
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.16 E-value=7.9e-05 Score=60.06 Aligned_cols=92 Identities=12% Similarity=-0.108 Sum_probs=47.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHH
Q 040371 110 WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLG 189 (410)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~ 189 (410)
+......+.+.|++++|...|+...... +.+...+..+..++...|++++|...|+.... --+.+...+..+..++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHH
Confidence 3344444555555555555555554431 22344455555555555555555555555553 12223455555555555
Q ss_pred hcCCHHHHHHHHHhC
Q 040371 190 RAGHIEEAYGLITSM 204 (410)
Q Consensus 190 ~~g~~~~A~~~~~~m 204 (410)
+.|++++|...|++.
T Consensus 104 ~~g~~~eAi~~~~~A 118 (144)
T PRK15359 104 MMGEPGLAREAFQTA 118 (144)
T ss_pred HcCCHHHHHHHHHHH
Confidence 555555555555554
No 100
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.13 E-value=0.0013 Score=61.45 Aligned_cols=145 Identities=13% Similarity=0.063 Sum_probs=103.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHH
Q 040371 108 SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD-SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ-LEHYGAMV 185 (410)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~li 185 (410)
..+.-..-.+.+.|+.++|+..++.+... .|| ..-.......+...++..+|.+.++.+... .|+ ...+-.+.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHH
Confidence 33444444456678888888888887764 454 444445556777888888888888888743 455 55666777
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCchHHHHHHHHHhcCChhHHHHH
Q 040371 186 DLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENV 263 (410)
Q Consensus 186 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 263 (410)
.+|.+.|++.+|..++++. .-.| |...|..|-.+|...|+..++... ....|.-.|+|++|...
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A--------------~AE~~~~~G~~~~A~~~ 447 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA--------------RAEGYALAGRLEQAIIF 447 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH--------------HHHHHHhCCCHHHHHHH
Confidence 8888888888888888776 2233 677888888888888887776544 34457778888888888
Q ss_pred HHHHHhCC
Q 040371 264 REIMKKKG 271 (410)
Q Consensus 264 ~~~m~~~g 271 (410)
+...++..
T Consensus 448 l~~A~~~~ 455 (484)
T COG4783 448 LMRASQQV 455 (484)
T ss_pred HHHHHHhc
Confidence 88777653
No 101
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.11 E-value=3.7e-06 Score=47.96 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 040371 108 SVWNAMISGVAIHGLAADASAIFTKMEMFNV 138 (410)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 138 (410)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4678888888888888888888888877663
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.11 E-value=0.0025 Score=67.85 Aligned_cols=258 Identities=13% Similarity=0.063 Sum_probs=166.8
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHHc----CC-CccHHHHHHHHH
Q 040371 14 GGFVRNARFDEALRFFREMLSSKVEPDK----FTFASVIYGCARLGALNHAYWVHNLIIEK----KI-ELNFILSAALID 84 (410)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~ 84 (410)
..+...|++++|...+++....--..+. ...+.+..++...|+++.|...+...... |- .....+...+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 4456789999999999988763111122 23455566677899999999998887653 21 112345566777
Q ss_pred HHHhcCCHHHHHHHHHhccc-------CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHH
Q 040371 85 MYSKCGKIQMAKEVFDTVQR-------ND----VSVWNAMISGVAIHGLAADASAIFTKMEMF--NVLPD--SITFLGLL 149 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~-------~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~ll 149 (410)
.+...|+++.|...+++... ++ ...+..+...+...|++++|...+.+.... ...|. ...+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 88899999999998876542 11 123445555677789999999999887553 11222 23344455
Q ss_pred HHHHccCCHHHHHHHHHHhhhhcCCCCChhHH-----HHHHHHHHhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHH
Q 040371 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY-----GAMVDLLGRAGHIEEAYGLITSMTM-E-PDV----VVWRALLS 218 (410)
Q Consensus 150 ~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~-~-p~~----~~~~~li~ 218 (410)
......|+.++|.+.++....-.........+ ...+..+...|+.+.|..++..... . ... ..+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 67778999999999998875321111111111 1122445668999999999877621 1 111 11345556
Q ss_pred HHHhcCchhHHHHHHHhhc----c-----CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 040371 219 ACRTFKRLELGEVAIVNIS----R-----LMGGDYVLLSNMYCYLKRWDTAENVREIMKKKG 271 (410)
Q Consensus 219 ~~~~~g~~~~a~~~~~~~~----~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 271 (410)
++...|+.++|...+.+.. . ....+...+..+|.+.|+.++|...+.+..+..
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 6788899999988732211 1 112345567788999999999999999887654
No 103
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.10 E-value=0.00063 Score=68.77 Aligned_cols=144 Identities=8% Similarity=-0.033 Sum_probs=115.2
Q ss_pred CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHH
Q 040371 37 VEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN---DVSVWNAM 113 (410)
Q Consensus 37 ~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~l 113 (410)
...+...+..|..+..+.|.+++|..+++...+.. +-+......+...+.+.+++++|...+++.... +....+.+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 45567888888899999999999999999998863 335677788888999999999999999988753 44567777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHH
Q 040371 114 ISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAM 184 (410)
Q Consensus 114 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 184 (410)
..++.+.|++++|.++|++....+ .-+..++.++..++-..|+.++|...|+...+ ...|....|+.+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~--~~~~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD--AIGDGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hhCcchHHHHHH
Confidence 888889999999999999998732 23478888888999999999999999999885 334445555443
No 104
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.10 E-value=0.00054 Score=58.97 Aligned_cols=162 Identities=15% Similarity=0.108 Sum_probs=128.7
Q ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHH
Q 040371 38 EPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMI 114 (410)
Q Consensus 38 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li 114 (410)
.|+.......-.++...|+-+....+.....-. .+.|..+.++++....+.|++..|...|.+... +|...||.+-
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence 453332266677777788877777766664432 356777888899999999999999999998764 4788999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC
Q 040371 115 SGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGH 193 (410)
Q Consensus 115 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 193 (410)
.+|.+.|+.++|..-|.+..+. .| +...++.+.-.+.-.|+.+.|..++..... .-.-|..+-..+.-..+..|+
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l--~~~ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYL--SPAADSRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh--CCCCchHHHHHHHHHHhhcCC
Confidence 9999999999999999988874 44 345577788888889999999999998874 333367788888999999999
Q ss_pred HHHHHHHHHhC
Q 040371 194 IEEAYGLITSM 204 (410)
Q Consensus 194 ~~~A~~~~~~m 204 (410)
+++|.++...-
T Consensus 218 ~~~A~~i~~~e 228 (257)
T COG5010 218 FREAEDIAVQE 228 (257)
T ss_pred hHHHHhhcccc
Confidence 99999987764
No 105
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.09 E-value=0.00017 Score=58.12 Aligned_cols=109 Identities=12% Similarity=0.105 Sum_probs=77.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc--
Q 040371 27 RFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR-- 104 (410)
Q Consensus 27 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-- 104 (410)
.+|++..+ +.|+. +.....++...|+++.|...+...+... +.+..++..+..++.+.|++++|...|++...
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34555544 24443 4456667778888888888888877764 44677778888888888888888888887664
Q ss_pred -CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 040371 105 -NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDS 142 (410)
Q Consensus 105 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 142 (410)
.+...|..+..++.+.|+.++|...|++.... .|+.
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~ 125 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYAD 125 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 25567777778888888888888888887763 4543
No 106
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.08 E-value=0.0026 Score=62.59 Aligned_cols=245 Identities=17% Similarity=0.089 Sum_probs=163.9
Q ss_pred HhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040371 22 FDEALRFFREMLSSK-VEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD 100 (410)
Q Consensus 22 ~~~a~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 100 (410)
..++++.+++..+.+ -.|+..-|.++ -++..++++.|.+...+.++.+-..+...|.-|.-.+.-.+++.+|+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 457788888887653 34444444433 456778999999999999998767789999999999999999999998877
Q ss_pred hcccC--C---------------------hhhHHHHHHHHH------HcC-----------------ChHHHHHHHHHHH
Q 040371 101 TVQRN--D---------------------VSVWNAMISGVA------IHG-----------------LAADASAIFTKME 134 (410)
Q Consensus 101 ~m~~~--~---------------------~~~~~~li~~~~------~~g-----------------~~~~A~~l~~~m~ 134 (410)
...+. + +.|...++..+- +.+ +..+|....++..
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 54321 0 111111111111 001 1111111111110
Q ss_pred --------HCC---------CC--CCH------HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHH
Q 040371 135 --------MFN---------VL--PDS------ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLG 189 (410)
Q Consensus 135 --------~~g---------~~--p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~ 189 (410)
..| +. |+. ..+......+.+.+..++|...+.+..+ -.......|.-....+.
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLE 695 (799)
T ss_pred HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHH
Confidence 000 11 111 1223444556677788888877777663 22233556666667788
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHH--H---HHhhccCCCchHHHHHHHHHhcCChhHHHH
Q 040371 190 RAGHIEEAYGLITSM-TMEPD-VVVWRALLSACRTFKRLELGEV--A---IVNISRLMGGDYVLLSNMYCYLKRWDTAEN 262 (410)
Q Consensus 190 ~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~--~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 262 (410)
..|++++|...|... -+.|+ +.+.+++-..+.+.|+...|.. + ..+.+|.++..|..|..++-+.|+.++|.+
T Consensus 696 ~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 899999999887765 67785 5678888889999999888888 4 678899999999999999999999999999
Q ss_pred HHHHHHhC
Q 040371 263 VREIMKKK 270 (410)
Q Consensus 263 ~~~~m~~~ 270 (410)
.|....+-
T Consensus 776 cf~aa~qL 783 (799)
T KOG4162|consen 776 CFQAALQL 783 (799)
T ss_pred HHHHHHhh
Confidence 99876553
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.08 E-value=0.00017 Score=61.92 Aligned_cols=157 Identities=14% Similarity=0.079 Sum_probs=125.7
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 040371 10 NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKC 89 (410)
Q Consensus 10 n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 89 (410)
..+-..+...|+-+.++.+..+.... .+-|............+.|++..|...+.+..... ++|..+|+.+.-.|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 45667777888888888887775432 23355566678889999999999999999988765 78999999999999999
Q ss_pred CCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 040371 90 GKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD 166 (410)
Q Consensus 90 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 166 (410)
|+.+.|+.-|.+..+ .+....|.|.-.|.-.|+.+.|..++......+.. |...-..+..+....|++++|+.+-.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 999999999987653 46677888888888899999999999988876533 55566667778889999999999876
Q ss_pred Hhh
Q 040371 167 HMR 169 (410)
Q Consensus 167 ~m~ 169 (410)
.-.
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 543
No 108
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.0029 Score=54.72 Aligned_cols=159 Identities=14% Similarity=0.062 Sum_probs=98.9
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 040371 64 HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSI 143 (410)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 143 (410)
.+.+.......+......-...|.+.|++++|.+.......-+....|. ..+.+..+.+-|.+.+++|++- -+..
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~i---ded~ 170 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNV--QILLKMHRFDLAEKELKKMQQI---DEDA 170 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence 3333333333343444444556778888888888877744333333333 3355667778888888888753 3556
Q ss_pred HHHHHHHHHHc----cCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 040371 144 TFLGLLTACSH----CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM--TMEPDVVVWRALL 217 (410)
Q Consensus 144 t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li 217 (410)
|.+-|..++.+ .+.+.+|.-+|++|.+ ...|++.+.+-+..+....|++++|..+++.. ....+..+...+|
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 67666666654 4567788888888875 35677777777777778888888888887776 2223555555555
Q ss_pred HHHHhcCchhHH
Q 040371 218 SACRTFKRLELG 229 (410)
Q Consensus 218 ~~~~~~g~~~~a 229 (410)
-..-..|...++
T Consensus 249 v~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 249 VLALHLGKDAEV 260 (299)
T ss_pred HHHHHhCCChHH
Confidence 555555554333
No 109
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.05 E-value=0.00024 Score=56.46 Aligned_cols=93 Identities=11% Similarity=0.037 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHH
Q 040371 42 FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVA 118 (410)
Q Consensus 42 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~ 118 (410)
.....+...+...|+++.|.+.++.+...+ +.+...+..+...|.+.|++++|...|++... .+...|..+...|.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344455555566666666666666666553 33556666666666666666666666665532 23445555556666
Q ss_pred HcCChHHHHHHHHHHHH
Q 040371 119 IHGLAADASAIFTKMEM 135 (410)
Q Consensus 119 ~~g~~~~A~~l~~~m~~ 135 (410)
..|+.++|+..|++..+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 97 ALGEPESALKALDLAIE 113 (135)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666666655
No 110
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.0034 Score=56.40 Aligned_cols=116 Identities=12% Similarity=0.093 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH-HHhcCchhHHHHHH
Q 040371 157 LVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TME-PDVVVWRALLSA-CRTFKRLELGEVAI 233 (410)
Q Consensus 157 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~-~~~~g~~~~a~~~~ 233 (410)
++|+..-+++.+.. +-...|...+ .+..+++..|.+.+|+++|-++ +.+ .|..+|.+++.- |...+.++.|..++
T Consensus 374 qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 374 QFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34555555555442 2222333333 3567788889999999999887 222 377788776654 57889999999996
Q ss_pred HhhccCC-Cc-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcC
Q 040371 234 VNISRLM-GG-DYVLLSNMYCYLKRWDTAENVREIMKKKGVRK 274 (410)
Q Consensus 234 ~~~~~~~-~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 274 (410)
.+.+.+. .. ....+.+.|.+++.+--|.+.|+.++..+-.|
T Consensus 452 lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 452 LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 6665332 22 23345678899999999999999988765433
No 111
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.01 E-value=0.00052 Score=66.90 Aligned_cols=190 Identities=14% Similarity=0.200 Sum_probs=111.9
Q ss_pred HhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHH
Q 040371 52 ARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFT 131 (410)
Q Consensus 52 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 131 (410)
.....+..|..+++.+..... -..-|.-+.+.|+..|+++.|.++|.+.. .++-.|..|.++|+|+.|.++-.
T Consensus 743 i~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHH
Confidence 344455556666655544321 22335556677777777777777776542 34556677777777777777665
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHH
Q 040371 132 KMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV 211 (410)
Q Consensus 132 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~ 211 (410)
+.. |.......|.+-..-.-..|.+.+|++++-.+. .|+ ..|.+|-+.|..+..+++.++-.-..-..
T Consensus 816 e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~l~d 883 (1636)
T KOG3616|consen 816 ECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDHLHD 883 (1636)
T ss_pred Hhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----Cch-----HHHHHHHhhCcchHHHHHHHHhChhhhhH
Confidence 542 223333445444455556677777776654332 223 24667777777777777776652111234
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHhhccCCCchHHHHHHHHHhcCChhHHHHHHH
Q 040371 212 VWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVRE 265 (410)
Q Consensus 212 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 265 (410)
|...+..-+-..|++..|+.-+.+- .-|.+.+++|-..+.|++|.++-+
T Consensus 884 t~~~f~~e~e~~g~lkaae~~flea-----~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEEHFLEA-----GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhh-----hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 5555666666677777776664432 345666777777777877776654
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.01 E-value=0.0003 Score=68.53 Aligned_cols=204 Identities=15% Similarity=0.102 Sum_probs=136.2
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 040371 11 SMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCG 90 (410)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 90 (410)
.+...+...|-...|+.+|++. ..|..++.+|...|+...|..+..+-++ -+||...|..|.+....--
T Consensus 403 ~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChH
Confidence 3455666778888888888764 3466777788888888888888777776 3677888888877776666
Q ss_pred CHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 040371 91 KIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS 170 (410)
Q Consensus 91 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 170 (410)
-+++|.++++....+--..|+..+ .++++++++.+.|+.-.+.. ..-..||-..-.+..+.++++.|.+.|....
T Consensus 472 ~yEkawElsn~~sarA~r~~~~~~---~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv- 546 (777)
T KOG1128|consen 472 LYEKAWELSNYISARAQRSLALLI---LSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV- 546 (777)
T ss_pred HHHHHHHHhhhhhHHHHHhhcccc---ccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh-
Confidence 678888887766544222222222 23677777777777655432 1234566666666667777888777777766
Q ss_pred hcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCchhHHHHH
Q 040371 171 RYSIQPQ-LEHYGAMVDLLGRAGHIEEAYGLITSM-TM-EPDVVVWRALLSACRTFKRLELGEVA 232 (410)
Q Consensus 171 ~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~~~~~~g~~~~a~~~ 232 (410)
...|+ ...||.+-.+|.+.|+-.+|...+.+. .. .-+-..|...+-...+.|.++.|.++
T Consensus 547 --tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 547 --TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred --hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHH
Confidence 33444 567888888888888888887777766 21 12345566666666777777777777
No 113
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.01 E-value=0.0067 Score=58.71 Aligned_cols=115 Identities=11% Similarity=0.147 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHhhhhcCCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CC----HHHHHHHHHHHHhc
Q 040371 156 GLVEEGRKYFDHMRSRYSIQPQ------LEHYGAMVDLLGRAGHIEEAYGLITSMTME--PD----VVVWRALLSACRTF 223 (410)
Q Consensus 156 g~~~~a~~~~~~m~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~----~~~~~~li~~~~~~ 223 (410)
|+..+-...+.++.+ .+.|. -..|..+.+.|-..|+++.|..+|++.-.- +. ..+|..-...=.++
T Consensus 361 ~~~~~~i~tyteAv~--~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVK--TVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred CChHHHHHHHHHHHH--ccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 445555556666553 34442 235788889999999999999999987211 11 34566655666788
Q ss_pred CchhHHHHHHHhhc--cCC-------------------CchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 040371 224 KRLELGEVAIVNIS--RLM-------------------GGDYVLLSNMYCYLKRWDTAENVREIMKKKGV 272 (410)
Q Consensus 224 g~~~~a~~~~~~~~--~~~-------------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 272 (410)
.+++.|.+++..-. |.+ ...|...++.-...|-++....+++++.+-.+
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri 508 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI 508 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 88888888832211 111 12344445555566777777777777765544
No 114
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.99 E-value=0.00084 Score=65.55 Aligned_cols=132 Identities=15% Similarity=0.121 Sum_probs=85.5
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHH
Q 040371 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIE 195 (410)
Q Consensus 116 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 195 (410)
+-.....|.+|+.+++.++.... -.--|..+..-|+..|+++.|+++|-+.- .++-.|++|.++|+++
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHH
Confidence 34445677777877777766432 22346677788888999999998886542 3566788999999999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCchHHHHHHHHHhcCChhHHHHHH
Q 040371 196 EAYGLITSM-TMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVR 264 (410)
Q Consensus 196 ~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 264 (410)
.|.++-.+. +-+.....|.+-..-.-.+|++.+|+++......++ ..|.+|-+.|..++..++.
T Consensus 809 da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~-----~aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 809 DAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPD-----KAIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred HHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCch-----HHHHHHHhhCcchHHHHHH
Confidence 998887775 433344556665666778888888888733333222 2344455555555444443
No 115
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.0021 Score=65.03 Aligned_cols=235 Identities=16% Similarity=0.236 Sum_probs=152.7
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcC---------------
Q 040371 9 WNSMIGGFVRNARFDEALRFFREMLSSK--VEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKK--------------- 71 (410)
Q Consensus 9 ~n~li~~~~~~g~~~~a~~l~~~m~~~g--~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--------------- 71 (410)
-+.-+.++..++-+.+-++++++..-.+ ..-+...-+.++-... ..+.....+..+++-...
T Consensus 987 vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyDa~~ia~iai~~~LyE 1065 (1666)
T KOG0985|consen 987 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYDAPDIAEIAIENQLYE 1065 (1666)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCCchhHHHHHhhhhHHH
Confidence 3455788888899999999998886322 1111122222222222 223333333333332221
Q ss_pred --------CCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 040371 72 --------IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSI 143 (410)
Q Consensus 72 --------~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 143 (410)
+..+....+.||+ ..+.+|.|.++-++.. ....|+.+..+-.+.|...+|++-|-+. -|..
T Consensus 1066 EAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps 1134 (1666)
T KOG0985|consen 1066 EAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPS 1134 (1666)
T ss_pred HHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcH
Confidence 1112222222221 2234444444444433 3357999999999999999999988542 2567
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 040371 144 TFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTF 223 (410)
Q Consensus 144 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~ 223 (410)
.|.-++..+.+.|.+++-.+++.-.+++ .-+|.+ -+.||-+|++.+++.+-++++. .||......+-.-|...
T Consensus 1135 ~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~i--d~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~ 1207 (1666)
T KOG0985|consen 1135 NYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYI--DSELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEE 1207 (1666)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccc--hHHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhh
Confidence 7999999999999999999999887765 555554 4589999999999999877764 37888888888889999
Q ss_pred CchhHHHHHHHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 040371 224 KRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIM 267 (410)
Q Consensus 224 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 267 (410)
|.++.|.-+.. +.+.|..|...+...|.+..|...-++.
T Consensus 1208 ~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1208 KMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 98888876633 2356677777777778777776655443
No 116
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.96 E-value=0.001 Score=53.70 Aligned_cols=124 Identities=8% Similarity=0.042 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcc--HHHHHH
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPD---KFTFASVIYGCARLGALNHAYWVHNLIIEKKIELN--FILSAA 81 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ 81 (410)
..|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......++ ....-.
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 3466666666 3777888877788777652 222 12333344666777888888888888877653332 223445
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccC--ChhhHHHHHHHHHHcCChHHHHHHHHH
Q 040371 82 LIDMYSKCGKIQMAKEVFDTVQRN--DVSVWNAMISGVAIHGLAADASAIFTK 132 (410)
Q Consensus 82 li~~y~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~ 132 (410)
|...+...|++++|...++....+ ....+......|.+.|+.++|...|++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666777778888888877765433 233555566677777777777777765
No 117
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.0033 Score=57.63 Aligned_cols=282 Identities=10% Similarity=-0.018 Sum_probs=145.5
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKF-TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALI 83 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 83 (410)
|+....++...|..+|+.++|+..|++.+.. .|+.. ......-.+...|+++....+-..+.... +....-|-.-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 4445566666667777777777777666542 33322 11111222345566666555555554332 11111121112
Q ss_pred HHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHH
Q 040371 84 DMYSKCGKIQMAKEVFDTVQRN---DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVE 159 (410)
Q Consensus 84 ~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 159 (410)
.......+++.|..+-++-.+- ++..|-.--..+.+.|++++|.-.|+..+. +.| +...|..|+..|...|.+.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHH
Confidence 2223344566666665554432 333333333455566677777777766654 333 4566777777777777777
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHH-HHHH-hcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCchhHHHHHHHh
Q 040371 160 EGRKYFDHMRSRYSIQPQLEHYGAMV-DLLG-RAGHIEEAYGLITSM-TMEPDV-VVWRALLSACRTFKRLELGEVAIVN 235 (410)
Q Consensus 160 ~a~~~~~~m~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~~~~~~m-~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~ 235 (410)
+|.-.-+...+ -+..+..+.+.+. +.+. ...--++|.+++++- .++|+. ...+.+...|...|..+.+..++.+
T Consensus 386 EA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 66666555543 2222333333221 1111 112245666666654 555653 3445555556666666666666332
Q ss_pred h--ccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHH
Q 040371 236 I--SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQR 313 (410)
Q Consensus 236 ~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 313 (410)
- ..+|....+.|.+.+...+.+.+|.+.|.... +..|+.+.+.+-++.|.++
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL--------------------------r~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL--------------------------RQDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHH--------------------------hcCccchHHHHHHHHHHhc
Confidence 2 12333455666666666666666666654433 3355666777777755444
Q ss_pred HHHCCcccCC
Q 040371 314 TKSEGFLPAT 323 (410)
Q Consensus 314 m~~~g~~pd~ 323 (410)
|. .||.
T Consensus 518 ~~----~~DA 523 (564)
T KOG1174|consen 518 DD----ESDA 523 (564)
T ss_pred cC----CCCc
Confidence 44 5555
No 118
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.93 E-value=0.017 Score=61.60 Aligned_cols=302 Identities=11% Similarity=0.052 Sum_probs=185.6
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHC--CC----CCCHH--HHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcc----HHHH
Q 040371 12 MIGGFVRNARFDEALRFFREMLSS--KV----EPDKF--TFASVIYGCARLGALNHAYWVHNLIIEKKIELN----FILS 79 (410)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~~~--g~----~pd~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~ 79 (410)
....+...|++++|...+...... .. .|... ....+...+...|+++.+...++...+.-...+ ....
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~ 494 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT 494 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 344556789999999998877542 11 11111 122223445678999999999998876421112 2345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc-------CC--hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCC--C-CHH
Q 040371 80 AALIDMYSKCGKIQMAKEVFDTVQR-------ND--VSVWNAMISGVAIHGLAADASAIFTKMEMF----NVL--P-DSI 143 (410)
Q Consensus 80 ~~li~~y~~~g~~~~A~~~f~~m~~-------~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--p-~~~ 143 (410)
+.+...+...|+++.|...+++... +. ..+++.+...+...|++++|...+++.... +.. | ...
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 6677778889999999999887652 11 234555667788899999999998876552 211 1 223
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhc-CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHH-
Q 040371 144 TFLGLLTACSHCGLVEEGRKYFDHMRSRY-SIQPQ--LEHYGAMVDLLGRAGHIEEAYGLITSM----TMEPDVVVWRA- 215 (410)
Q Consensus 144 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~- 215 (410)
.+..+...+...|++++|...+....... ...+. ...+..+...+...|++++|.+.+.+. ........+..
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 654 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN 654 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence 34445556677899999999988875421 11121 334445666788899999998887765 11111111111
Q ss_pred ----HHHHHHhcCchhHHHHHHHhhccCC-Cch------HHHHHHHHHhcCChhHHHHHHHHHHhC----CCcCCCceeE
Q 040371 216 ----LLSACRTFKRLELGEVAIVNISRLM-GGD------YVLLSNMYCYLKRWDTAENVREIMKKK----GVRKSQGKSW 280 (410)
Q Consensus 216 ----li~~~~~~g~~~~a~~~~~~~~~~~-~~~------~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~s~ 280 (410)
.+..+...|+.+.|...+....... ... ...+..++...|++++|...+++.... |.........
T Consensus 655 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~ 734 (903)
T PRK04841 655 ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNL 734 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 2234456788888888854433221 111 345777889999999999999887653 2211110000
Q ss_pred EEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHCCcc
Q 040371 281 LELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFL 320 (410)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 320 (410)
. .+...+...|+.++|...+.+..+.-...|+.
T Consensus 735 ~-------~la~a~~~~G~~~~A~~~L~~Al~la~~~g~~ 767 (903)
T PRK04841 735 I-------LLNQLYWQQGRKSEAQRVLLEALKLANRTGFI 767 (903)
T ss_pred H-------HHHHHHHHcCCHHHHHHHHHHHHHHhCccchh
Confidence 0 01223455688889988888776666666663
No 119
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.91 E-value=0.006 Score=59.01 Aligned_cols=162 Identities=10% Similarity=0.128 Sum_probs=98.8
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 040371 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALI 83 (410)
Q Consensus 4 ~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 83 (410)
+-..-|-.++..| ..+++...+.+.+..++ +.+-...|.....-.+...|+-++|....+..++..+ .+.+.|..+.
T Consensus 6 KE~~lF~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~g 82 (700)
T KOG1156|consen 6 KENALFRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLG 82 (700)
T ss_pred HHHHHHHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHH
Confidence 3445566777776 45788888888888877 3444556666666667778888888888887777653 3566777777
Q ss_pred HHHHhcCCHHHHHHHHHhcc---cCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHH
Q 040371 84 DMYSKCGKIQMAKEVFDTVQ---RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVE 159 (410)
Q Consensus 84 ~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 159 (410)
-.+-...++++|++.|.... ..|...|.-+--.-++.|+++.......+..+. .| ....|..+..+.--.|+..
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHH
Confidence 77777788889988887643 223444444444444445555544444444432 22 2333444444444455555
Q ss_pred HHHHHHHHhhh
Q 040371 160 EGRKYFDHMRS 170 (410)
Q Consensus 160 ~a~~~~~~m~~ 170 (410)
.|..+.+...+
T Consensus 161 ~A~~il~ef~~ 171 (700)
T KOG1156|consen 161 MALEILEEFEK 171 (700)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.91 E-value=0.0038 Score=64.17 Aligned_cols=144 Identities=12% Similarity=0.106 Sum_probs=70.6
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFT-FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALI 83 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 83 (410)
+...|-.|+..|...+++++|.++.+.-.+. .|+... |..+...+.+.++.+.+..+ .+..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~-------------- 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLID-------------- 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhh--------------
Confidence 4567888888888888899888888866553 455432 22222344555555444333 2211
Q ss_pred HHHHhcCCHHHHHHHHHhccc--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 040371 84 DMYSKCGKIQMAKEVFDTVQR--NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG 161 (410)
Q Consensus 84 ~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 161 (410)
...+..++....-+...|.. .+..++-.+..+|-+.|+.++|..+|+++.+.. .-|....+.+...++.. ++++|
T Consensus 92 -~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 92 -SFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred -hcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 11111111111111111111 011234445555555555555555555555543 22344455555555555 55555
Q ss_pred HHHHHHhh
Q 040371 162 RKYFDHMR 169 (410)
Q Consensus 162 ~~~~~~m~ 169 (410)
.+++....
T Consensus 169 ~~m~~KAV 176 (906)
T PRK14720 169 ITYLKKAI 176 (906)
T ss_pred HHHHHHHH
Confidence 55555544
No 121
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.87 E-value=0.00037 Score=55.39 Aligned_cols=98 Identities=13% Similarity=0.105 Sum_probs=84.5
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 84 (410)
+......+...+.+.|++++|.+.|++....+ +.+...+..+..++...|+++.|...++...+.+ +.+..++..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 44556678888999999999999999998754 4477888899999999999999999999998875 557888888999
Q ss_pred HHHhcCCHHHHHHHHHhccc
Q 040371 85 MYSKCGKIQMAKEVFDTVQR 104 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~ 104 (410)
.|...|+.++|.+.|+...+
T Consensus 94 ~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999988764
No 122
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.0029 Score=62.76 Aligned_cols=205 Identities=15% Similarity=0.090 Sum_probs=124.6
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHC-C--------CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcc
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSS-K--------VEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELN 75 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~-g--------~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 75 (410)
+-..|..|.+.|.+..+.+-|.-.+-.|... | -.|+ .+=.-+.-....+|.+++|+.+|.+-.+..
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---- 830 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---- 830 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH----
Confidence 4567999999999988888777666666321 1 1222 222233333467889999999998887743
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcccCC-hhhHHHHHHHHHHcCChHHHHHHHHHH----------HHCC-------
Q 040371 76 FILSAALIDMYSKCGKIQMAKEVFDTVQRND-VSVWNAMISGVAIHGLAADASAIFTKM----------EMFN------- 137 (410)
Q Consensus 76 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m----------~~~g------- 137 (410)
.|=..|-..|.+++|.++-+.-..-. ..||..-..-+-..++.+.|++.|++- +.+.
T Consensus 831 -----LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Y 905 (1416)
T KOG3617|consen 831 -----LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQY 905 (1416)
T ss_pred -----HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHH
Confidence 44456778899999988766432211 124444444444456777777766653 1111
Q ss_pred --CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 040371 138 --VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRA 215 (410)
Q Consensus 138 --~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 215 (410)
-+.|...|.--....-..|++|.|+.++....+ |-++++..|-.|+.++|-++-++-+ |......
T Consensus 906 v~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA~esg---d~AAcYh 972 (1416)
T KOG3617|consen 906 VRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIAEESG---DKAACYH 972 (1416)
T ss_pred HHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEeeccCchHHHHHHHhcc---cHHHHHH
Confidence 112333333344444567888888888877663 5566666667777777776666654 4445555
Q ss_pred HHHHHHhcCchhHHHHH
Q 040371 216 LLSACRTFKRLELGEVA 232 (410)
Q Consensus 216 li~~~~~~g~~~~a~~~ 232 (410)
|..-|-..|++.+|...
T Consensus 973 laR~YEn~g~v~~Av~F 989 (1416)
T KOG3617|consen 973 LARMYENDGDVVKAVKF 989 (1416)
T ss_pred HHHHhhhhHHHHHHHHH
Confidence 55556666666655555
No 123
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.82 E-value=0.0011 Score=53.59 Aligned_cols=122 Identities=14% Similarity=0.087 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccCChh------hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 040371 78 LSAALIDMYSKCGKIQMAKEVFDTVQRNDVS------VWNAMISGVAIHGLAADASAIFTKMEMFNVLPDS--ITFLGLL 149 (410)
Q Consensus 78 ~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll 149 (410)
.|..++..+ ..++.+.+...++.+...... ..-.+...+...|++++|...|+........|+. .....+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 367777777777766643221 2223445667778888888888888776522321 2344456
Q ss_pred HHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 040371 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203 (410)
Q Consensus 150 ~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 203 (410)
..+...|++++|...++..... ......+....+.|.+.|+.++|...|++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6777788888888888664321 23345666777888888888888887764
No 124
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.81 E-value=0.0066 Score=54.42 Aligned_cols=212 Identities=11% Similarity=0.083 Sum_probs=131.7
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCCH--------------HHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHH
Q 040371 15 GFVRNARFDEALRFFREMLSSKVEPDK--------------FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSA 80 (410)
Q Consensus 15 ~~~~~g~~~~a~~l~~~m~~~g~~pd~--------------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 80 (410)
.+.++|.+++|..=|+..++....-+. ......+..+...|+...++.....+++.. +.|...+.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence 456789999999999988875311110 112334555667788888888888888874 56888888
Q ss_pred HHHHHHHhcCCHHHHHHHHH---hcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH---------
Q 040371 81 ALIDMYSKCGKIQMAKEVFD---TVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGL--------- 148 (410)
Q Consensus 81 ~li~~y~~~g~~~~A~~~f~---~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l--------- 148 (410)
.-..+|...|++.+|+.=+. ++.+.++.+..-+-..+...|+.+.++...++.++ +.||....-..
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHH
Confidence 88999999999999876554 44456777777788888889999999999988876 56775432111
Q ss_pred ----HHHHHccCCHHHHHHHHHHhhhhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 040371 149 ----LTACSHCGLVEEGRKYFDHMRSRYSIQPQ-----LEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPD-VVVWRALL 217 (410)
Q Consensus 149 ----l~a~~~~g~~~~a~~~~~~m~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li 217 (410)
+......+.+.++..-.+...+. .|. ...+..+-.+|...|++.+|++.-.+. .+.|| +.++.-=.
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRA 348 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 11112234444444444444322 222 122333444555566666666655554 44454 44554444
Q ss_pred HHHHhcCchhHHHHH
Q 040371 218 SACRTFKRLELGEVA 232 (410)
Q Consensus 218 ~~~~~~g~~~~a~~~ 232 (410)
.+|.....++.|+.-
T Consensus 349 eA~l~dE~YD~AI~d 363 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHD 363 (504)
T ss_pred HHHhhhHHHHHHHHH
Confidence 555555555555554
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.77 E-value=0.0042 Score=58.23 Aligned_cols=177 Identities=14% Similarity=0.007 Sum_probs=116.5
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 040371 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALI 83 (410)
Q Consensus 4 ~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 83 (410)
|+...+...+.+.........+-.++- +... -.-...-|...+. ....|+++.|+..+..+++. .+-|+..+....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~-~~~~aa~YG~A~~-~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~ 347 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLA-KRSK-RGGLAAQYGRALQ-TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAG 347 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHH-HHhC-ccchHHHHHHHHH-HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 344455555554443333333333332 2222 1112334444443 34678888888888887776 355677777788
Q ss_pred HHHHhcCCHHHHHHHHHhccc--CC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 040371 84 DMYSKCGKIQMAKEVFDTVQR--ND-VSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE 160 (410)
Q Consensus 84 ~~y~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 160 (410)
+.+.+.++.++|.+.|+++.. |+ ...+-.+..+|.+.|++.+|+.+++..... .+-|...|..|..+|...|+..+
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 348 DILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHH
Confidence 888888888888888888764 43 456666778888888888888888887765 34577888888888888888777
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 161 GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 161 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
+.....+ .|...|++++|..+....
T Consensus 427 a~~A~AE-------------------~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 427 ALLARAE-------------------GYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHH-------------------HHHhCCCHHHHHHHHHHH
Confidence 6654433 356677777777776655
No 126
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.77 E-value=0.001 Score=60.07 Aligned_cols=127 Identities=13% Similarity=0.138 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYG-CARLGALNHAYWVHNLIIEKKIELNFILSAALIDM 85 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 85 (410)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+..++. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 357777777777777777777777776432 2223334333333 22245566677777777665 45566777777777
Q ss_pred HHhcCCHHHHHHHHHhcccC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040371 86 YSKCGKIQMAKEVFDTVQRN------DVSVWNAMISGVAIHGLAADASAIFTKMEM 135 (410)
Q Consensus 86 y~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 135 (410)
+.+.|+.+.|+.+|++.... -...|...+.-=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777766532 223666666666666666666666666655
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.76 E-value=0.0023 Score=64.84 Aligned_cols=140 Identities=12% Similarity=0.076 Sum_probs=115.9
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDK-FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALI 83 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 83 (410)
++..+-.|.....+.|++++|..+++...+. .||. .....+..++.+.+.+++|....++.+... +.+....+.+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 3566777888889999999999999999874 6654 578888899999999999999999999875 44677888899
Q ss_pred HHHHhcCCHHHHHHHHHhcccCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040371 84 DMYSKCGKIQMAKEVFDTVQRND---VSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGL 148 (410)
Q Consensus 84 ~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 148 (410)
..+.+.|++++|..+|++...++ ..+|......+-..|+.++|...|++..+. ..|....|+..
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~ 228 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR 228 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence 99999999999999999998543 568888888889999999999999998775 23333444433
No 128
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.76 E-value=0.00064 Score=49.29 Aligned_cols=94 Identities=18% Similarity=0.174 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 040371 8 SWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYS 87 (410)
Q Consensus 8 ~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 87 (410)
+|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...++++.|.+.+....+.. +.+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 45567777778888888888888877642 3344566667777777777777777777776654 334456666666777
Q ss_pred hcCCHHHHHHHHHhcc
Q 040371 88 KCGKIQMAKEVFDTVQ 103 (410)
Q Consensus 88 ~~g~~~~A~~~f~~m~ 103 (410)
..|+.++|...|+...
T Consensus 80 ~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 80 KLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHhHHHHHHHHHHHH
Confidence 7777777776666543
No 129
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.75 E-value=0.027 Score=54.68 Aligned_cols=45 Identities=18% Similarity=0.375 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCAR 53 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 53 (410)
..|++|...|.+.|++++|.++|++-.+. .....-|..+.++|+.
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHH
Confidence 35888888888888888888888776653 2233445555555543
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.71 E-value=0.00078 Score=63.18 Aligned_cols=118 Identities=18% Similarity=0.119 Sum_probs=73.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 040371 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTF 223 (410)
Q Consensus 146 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~ 223 (410)
.+++..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +......-...|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 34555566666777777777776654 233 3444666666666666776666665 2223 444444444556667
Q ss_pred CchhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040371 224 KRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMK 268 (410)
Q Consensus 224 g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 268 (410)
++++.|..+ .....|.+-.+|..|..+|.+.|+++.|...++.+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777 444556666677777777777777777777776654
No 131
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.0085 Score=60.86 Aligned_cols=164 Identities=12% Similarity=0.149 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccC--ChhhHHHHHHHHHH
Q 040371 42 FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN--DVSVWNAMISGVAI 119 (410)
Q Consensus 42 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~ 119 (410)
..|+.+..|-...|.+.+|.+-|= + ..|+..|.-.++...+.|.+++-.+.+....++ ....=+.+|-+|++
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyi---k---adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAk 1178 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYI---K---ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHH---h---cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence 445555555555555555544331 1 124445555555555555555555544432221 11222345555555
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 040371 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199 (410)
Q Consensus 120 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 199 (410)
.++..+..++. ..||......+..-|...|.++.|.-+|.... .|..|...+...|.+..|.+
T Consensus 1179 t~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS----------N~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1179 TNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS----------NFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred hchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh----------hHHHHHHHHHHHHHHHHHHH
Confidence 55555444333 34555555555556666666665555554432 24555555555555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCchhHHHH
Q 040371 200 LITSMTMEPDVVVWRALLSACRTFKRLELGEV 231 (410)
Q Consensus 200 ~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~ 231 (410)
--++. .+..||.-+-.+|...+.+..|.-
T Consensus 1242 ~aRKA---ns~ktWK~VcfaCvd~~EFrlAQi 1270 (1666)
T KOG0985|consen 1242 AARKA---NSTKTWKEVCFACVDKEEFRLAQI 1270 (1666)
T ss_pred Hhhhc---cchhHHHHHHHHHhchhhhhHHHh
Confidence 44443 244555555555555555544443
No 132
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.69 E-value=0.02 Score=55.57 Aligned_cols=252 Identities=13% Similarity=0.056 Sum_probs=166.7
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 040371 18 RNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE 97 (410)
Q Consensus 18 ~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 97 (410)
..|+-++|.+..+.-.+..++ ..+-|..+.-.+-...++++|...|..+++.+ +.|..++.-|--.-++.|+++....
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred cccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 347888888887776654333 56778887777788889999999999999986 5578888888777788888887766
Q ss_pred HHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHccCCHHHHHHHHHH
Q 040371 98 VFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFN-VLPDSITFLGLL------TACSHCGLVEEGRKYFDH 167 (410)
Q Consensus 98 ~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll------~a~~~~g~~~~a~~~~~~ 167 (410)
.-....+ .....|.....++.-.|+...|..+.++..... -.|+...|.... ......|.+++|.+.+..
T Consensus 131 tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 131 TRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 6655543 356789999999999999999999999988764 356666554332 233467888888888776
Q ss_pred hhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-hcCchhHHH-HHHHhh---ccCCC
Q 040371 168 MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDVVVWRALLSACR-TFKRLELGE-VAIVNI---SRLMG 241 (410)
Q Consensus 168 m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~-~~g~~~~a~-~~~~~~---~~~~~ 241 (410)
-.. .+.-....-..-.+.+.+.+++++|..++..+ ...||..-|.-.+..+. +..+.-++. .++... -|...
T Consensus 211 ~e~--~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e 288 (700)
T KOG1156|consen 211 NEK--QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE 288 (700)
T ss_pred hhh--HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc
Confidence 553 22222333446677889999999999999988 45687776665555444 344444444 222221 12111
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 040371 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVR 273 (410)
Q Consensus 242 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 273 (410)
..-..=++......-.+...+++..+.++|++
T Consensus 289 ~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 289 CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred cchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 11111112222223344455566667777774
No 133
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.68 E-value=0.022 Score=52.27 Aligned_cols=110 Identities=12% Similarity=0.148 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040371 143 ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRT 222 (410)
Q Consensus 143 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~ 222 (410)
.+.+..+.-|...|....|.++-. ++.+ |+..-|-..+.+|+..+++++-.++... +..+..|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 345555666777888777776643 3444 6788888889999999999888876654 2244778888889999
Q ss_pred cCchhHHHHHHHhhccCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 040371 223 FKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREI 266 (410)
Q Consensus 223 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 266 (410)
.|+..+|..++.+. .+..-+.+|.++|+|.+|.+.--+
T Consensus 250 ~~~~~eA~~yI~k~------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPKI------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHhC------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 99988888886652 335677888899999988776543
No 134
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.67 E-value=0.0011 Score=49.47 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=67.6
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhhC--------CHHHHHHHHHHHHHcCCCccHHHHH
Q 040371 10 NSMIGGFVRNARFDEALRFFREMLSSKV-EPDKFTFASVIYGCARLG--------ALNHAYWVHNLIIEKKIELNFILSA 80 (410)
Q Consensus 10 n~li~~~~~~g~~~~a~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 80 (410)
...|..+..++++...-.+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4566777778999999999999999999 999999999999987654 2445678899999999999999999
Q ss_pred HHHHHHHh
Q 040371 81 ALIDMYSK 88 (410)
Q Consensus 81 ~li~~y~~ 88 (410)
.++....+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887664
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.0083 Score=51.95 Aligned_cols=168 Identities=14% Similarity=0.122 Sum_probs=116.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCC-
Q 040371 28 FFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRND- 106 (410)
Q Consensus 28 l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~- 106 (410)
+.+.+.......|......-...|...++++.|....... - +......=+..+.|..+.|-|.+.+++|.+-|
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide 168 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQIDE 168 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 3444444444545455555667788999999998877652 1 23333333455678888999999999998754
Q ss_pred hhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHH
Q 040371 107 VSVWNAMISGVAI----HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182 (410)
Q Consensus 107 ~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 182 (410)
-.+.+-|..++.+ .++..+|.-+|++|-+. ..|+..+.+....++...|++++|..+++....+. .-++.+..
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpetL~ 245 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPETLA 245 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHHHH
Confidence 3455555555544 45789999999999764 68999999999999999999999999999988652 23455666
Q ss_pred HHHHHHHhcCCHHHH-HHHHHhC
Q 040371 183 AMVDLLGRAGHIEEA-YGLITSM 204 (410)
Q Consensus 183 ~li~~~~~~g~~~~A-~~~~~~m 204 (410)
.+|-+-...|...++ .+.+..+
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHH
Confidence 666555556655443 3444444
No 136
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.60 E-value=0.0033 Score=52.37 Aligned_cols=110 Identities=12% Similarity=0.068 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHH
Q 040371 44 FASVIYGCARLGALNHAYWVHNLIIEKKIELN--FILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVA 118 (410)
Q Consensus 44 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~ 118 (410)
+..+...+...|++++|...+++.++....+. ...+..+...|.+.|++++|...+++..+ .+...+..+...|.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 44444444444555555555554444321111 23444445555555555555555544332 12333433444444
Q ss_pred HcCC--------------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 040371 119 IHGL--------------AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL 157 (410)
Q Consensus 119 ~~g~--------------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 157 (410)
..|+ +++|++.+++... ..|+. +..++.-+...|.
T Consensus 118 ~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~--~~p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 118 KRGEKAEEAGDQDEAEALFDKAAEYWKQAIR--LAPNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HcCChHhHhhCHHHHHHHHHHHHHHHHHHHh--hCchh--HHHHHHHHHhcCc
Confidence 4333 4667777777655 33443 5555555554443
No 137
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.59 E-value=0.0017 Score=48.54 Aligned_cols=81 Identities=11% Similarity=0.131 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHhhhhcCCCCChh
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKMEMFNV-LPDSITFLGLLTACSHCG--------LVEEGRKYFDHMRSRYSIQPQLE 179 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~~~~~ 179 (410)
+....|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. .+-+.+.+++.|... +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 445566667777999999999999999999 899999999999887643 345677788888865 8899999
Q ss_pred HHHHHHHHHHh
Q 040371 180 HYGAMVDLLGR 190 (410)
Q Consensus 180 ~~~~li~~~~~ 190 (410)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99988887754
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.58 E-value=0.014 Score=60.16 Aligned_cols=150 Identities=7% Similarity=-0.016 Sum_probs=108.5
Q ss_pred CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHH
Q 040371 36 KVEP-DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMI 114 (410)
Q Consensus 36 g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li 114 (410)
+..| +...+..|++++...+++++|.++.+..++.. +.....|-.+...|.+.++.+++..+ .++
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l 90 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLI 90 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhh
Confidence 3455 45588889999999999999999999776653 33344444444477888887666544 344
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCH
Q 040371 115 SGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194 (410)
Q Consensus 115 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 194 (410)
.......++.-+..+...|... .-+...+..+..+|-+.|+.+++..+++++.+- . +-++...|.+...|+.. ++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~-D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKA-D-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHh-hH
Confidence 4444555564445555566553 234557888999999999999999999999953 4 44688889999999998 99
Q ss_pred HHHHHHHHhC
Q 040371 195 EEAYGLITSM 204 (410)
Q Consensus 195 ~~A~~~~~~m 204 (410)
++|..++.+.
T Consensus 166 ~KA~~m~~KA 175 (906)
T PRK14720 166 EKAITYLKKA 175 (906)
T ss_pred HHHHHHHHHH
Confidence 9998888765
No 139
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.54 E-value=0.0016 Score=47.06 Aligned_cols=90 Identities=14% Similarity=0.052 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh
Q 040371 111 NAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGR 190 (410)
Q Consensus 111 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 190 (410)
..+...+...|++++|...|++..+.. +.+...+..+...+...+++++|.+.|+...+. .+.+...+..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHH
Confidence 334444555555555555555554431 112234444445555555555555555554431 12222345555555555
Q ss_pred cCCHHHHHHHHHh
Q 040371 191 AGHIEEAYGLITS 203 (410)
Q Consensus 191 ~g~~~~A~~~~~~ 203 (410)
.|++++|...+.+
T Consensus 81 ~~~~~~a~~~~~~ 93 (100)
T cd00189 81 LGKYEEALEAYEK 93 (100)
T ss_pred HHhHHHHHHHHHH
Confidence 5555555555544
No 140
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.039 Score=53.11 Aligned_cols=119 Identities=13% Similarity=0.162 Sum_probs=73.1
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHH--HHHHH--Hh
Q 040371 13 IGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAA--LIDMY--SK 88 (410)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~y--~~ 88 (410)
++.+.++|++++|+....+++..+ +-|...+..-+-+....+.++.|..+.+ ..+. ..+++. +=.+| .+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHH
Confidence 456667778888888888887654 4455566666777777777777764332 2221 111121 22333 46
Q ss_pred cCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 040371 89 CGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNV 138 (410)
Q Consensus 89 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 138 (410)
.+..|+|...++....-+..+...-...+.+.|++++|+++|+.+.+.+.
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 77777777777755544444555555566677777777777777766543
No 141
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.49 E-value=0.0013 Score=59.45 Aligned_cols=126 Identities=14% Similarity=0.110 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh-cCCHHHHHHHHHhccc---CChhhHHHHHHHH
Q 040371 42 FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSK-CGKIQMAKEVFDTVQR---NDVSVWNAMISGV 117 (410)
Q Consensus 42 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~m~~---~~~~~~~~li~~~ 117 (410)
.+|..+++..-+.+.++.|+.+|.++.+.+ ..+..+|-....+-.+ .++.+.|.++|+...+ .+...|..-+.-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 345556666666666666666666665432 1122233333333222 2334446666655442 2444555555555
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHhh
Q 040371 118 AIHGLAADASAIFTKMEMFNVLPDS---ITFLGLLTACSHCGLVEEGRKYFDHMR 169 (410)
Q Consensus 118 ~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~ 169 (410)
...|+.+.|..+|++.... +.++. ..|...+..=.+.|+++.+..+.+++.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555443 22111 244444444444455555554444444
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.0082 Score=51.61 Aligned_cols=149 Identities=14% Similarity=0.072 Sum_probs=69.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHH
Q 040371 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLL-TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIE 195 (410)
Q Consensus 117 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 195 (410)
....|+.+.|...++++...- |.+.-...+= --+-..|++++|.++++...++ -+.|..+|-.-+...-..|+--
T Consensus 62 Ald~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l 137 (289)
T KOG3060|consen 62 ALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNL 137 (289)
T ss_pred HHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcH
Confidence 334455556666666555432 3222111110 1112345566666666665543 1333444444444444455544
Q ss_pred HHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHH---HhhccCCCchHHHHHHHHHhcCC---hhHHHHHHHHH
Q 040371 196 EAYGLITSM--TMEPDVVVWRALLSACRTFKRLELGEVAI---VNISRLMGGDYVLLSNMYCYLKR---WDTAENVREIM 267 (410)
Q Consensus 196 ~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~---~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m 267 (410)
+|++-+.+. .+-.|...|.-+-.-|...|+++.|.-.+ .-..|.++..+..+.+.+...|. .+-|.+.+.+.
T Consensus 138 ~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 138 EAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 554433333 23345566666666666666666655552 22345555445555555443332 33344444444
Q ss_pred Hh
Q 040371 268 KK 269 (410)
Q Consensus 268 ~~ 269 (410)
.+
T Consensus 218 lk 219 (289)
T KOG3060|consen 218 LK 219 (289)
T ss_pred HH
Confidence 33
No 143
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.48 E-value=0.0064 Score=46.92 Aligned_cols=108 Identities=17% Similarity=0.118 Sum_probs=73.9
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCC--ccHHHHHHHHHHHH
Q 040371 12 MIGGFVRNARFDEALRFFREMLSSKVEPD--KFTFASVIYGCARLGALNHAYWVHNLIIEKKIE--LNFILSAALIDMYS 87 (410)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~y~ 87 (410)
+-.++-..|+.++|+.+|++....|+... ...+..+.+++...|++++|..+++........ .+..+...+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45567778999999999999888776654 336667778888889999998888888765211 12233333444667
Q ss_pred hcCCHHHHHHHHHhcccCChhhHHHHHHHHHH
Q 040371 88 KCGKIQMAKEVFDTVQRNDVSVWNAMISGVAI 119 (410)
Q Consensus 88 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 119 (410)
..|+.++|.+.+-....++...|.--|..|+.
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFYAD 118 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77888888887766655555566665655543
No 144
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.47 E-value=0.0059 Score=50.57 Aligned_cols=91 Identities=15% Similarity=0.026 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHH
Q 040371 42 FTFASVIYGCARLGALNHAYWVHNLIIEKKIEL--NFILSAALIDMYSKCGKIQMAKEVFDTVQRN---DVSVWNAMISG 116 (410)
Q Consensus 42 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~ 116 (410)
..|..+...+...|++++|...+...+.....+ ...++..+...|.+.|+.++|+..|++.... ...+++.+...
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 344555555555666666666666665542221 1235566666666666666666666654421 23344555444
Q ss_pred HH-------HcCChHHHHHHHHH
Q 040371 117 VA-------IHGLAADASAIFTK 132 (410)
Q Consensus 117 ~~-------~~g~~~~A~~l~~~ 132 (410)
|. ..|++++|+..+++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHH
Confidence 44 56666655444443
No 145
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.47 E-value=0.00036 Score=50.40 Aligned_cols=80 Identities=14% Similarity=0.204 Sum_probs=38.6
Q ss_pred cCCHhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 040371 19 NARFDEALRFFREMLSSKV-EPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE 97 (410)
Q Consensus 19 ~g~~~~a~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 97 (410)
+|+++.|+.+|+++.+... .|+...+-.+..++.+.|+++.|..+++. .+.+. .+....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4566666666666655321 11233333455555666666666666655 22211 122333344555555666666655
Q ss_pred HHH
Q 040371 98 VFD 100 (410)
Q Consensus 98 ~f~ 100 (410)
+|+
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 146
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.44 E-value=0.084 Score=47.59 Aligned_cols=188 Identities=13% Similarity=0.091 Sum_probs=131.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHH---HHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHc
Q 040371 79 SAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMI---SGVAIHGLAADASAIFTKMEMFNVLPDSITF-LGLLTACSH 154 (410)
Q Consensus 79 ~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~ 154 (410)
.--|...+...|++.+|+.-|....+-|...|-++. ..|...|+...|+.=|.+.++ ++||-..- .--...+.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhh
Confidence 334555566678888888888887777776666653 467778888888888888776 57774321 112234567
Q ss_pred cCCHHHHHHHHHHhhhhcCC------------CCChhHHH--HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 040371 155 CGLVEEGRKYFDHMRSRYSI------------QPQLEHYG--AMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLS 218 (410)
Q Consensus 155 ~g~~~~a~~~~~~m~~~~~~------------~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~ 218 (410)
.|.+++|..=|+.+... .- .+...+|+ ..+..+.-.|+...|+..+..+ .+.| |...+..=..
T Consensus 119 ~Gele~A~~DF~~vl~~-~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rak 197 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQH-EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAK 197 (504)
T ss_pred cccHHHHHHHHHHHHhc-CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHH
Confidence 88888888888887743 11 01111222 2333455678888888888776 5555 6777777778
Q ss_pred HHHhcCchhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040371 219 ACRTFKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKK 269 (410)
Q Consensus 219 ~~~~~g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 269 (410)
+|...|.+..|+.- ..++..++...+.-+...+...|+.+.+....++-.+
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 88899999988876 5667778888888889999999999988887776654
No 147
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.43 E-value=0.039 Score=49.99 Aligned_cols=196 Identities=13% Similarity=0.087 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhhCCHHHHHHHHHHHHHc----CCCc-cHH
Q 040371 8 SWNSMIGGFVRNARFDEALRFFREMLS----SKVEPDK-FTFASVIYGCARLGALNHAYWVHNLIIEK----KIEL-NFI 77 (410)
Q Consensus 8 ~~n~li~~~~~~g~~~~a~~l~~~m~~----~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~~-~~~ 77 (410)
.|+.....|...|++++|.+.|.+... .+-+.+. ..|......+.+ .+++.|.+.+.+.... |-.. -..
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA~ 115 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAAK 115 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 477777778888888888888877633 2211111 234444444433 3777777766665432 3111 123
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHhccc----CC-----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCH
Q 040371 78 LSAALIDMYSKC-GKIQMAKEVFDTVQR----ND-----VSVWNAMISGVAIHGLAADASAIFTKMEMFNVL-----PDS 142 (410)
Q Consensus 78 ~~~~li~~y~~~-g~~~~A~~~f~~m~~----~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~ 142 (410)
.+..+...|-+. |++++|.+.|++..+ .+ ...+..+...+.+.|++++|.++|++....-.. ++.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 455556666666 666666666655431 11 124445556666666666777666666543221 111
Q ss_pred H-HHHHHHHHHHccCCHHHHHHHHHHhhhh-cCCCCC--hhHHHHHHHHHHhc--CCHHHHHHHHHhC
Q 040371 143 I-TFLGLLTACSHCGLVEEGRKYFDHMRSR-YSIQPQ--LEHYGAMVDLLGRA--GHIEEAYGLITSM 204 (410)
Q Consensus 143 ~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~~~--~~~~~~li~~~~~~--g~~~~A~~~~~~m 204 (410)
. .|...+-.+...|++..|.+.|+..... .++..+ -.....||.++-.. ..+++|..-|+.+
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 1 1222233444556666666666665422 122222 22344455554432 3455555556555
No 148
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.42 E-value=0.0021 Score=51.61 Aligned_cols=93 Identities=13% Similarity=0.009 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHH---HHhhccCCCchHHHHHHHHH
Q 040371 178 LEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDYVLLSNMYC 252 (410)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~ 252 (410)
....-.+-..+...|++++|.++|+-. .+.| +..-|-.|-..|...|++++|+.. ...+.|+++.++..+..+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 334445566678899999999999987 4556 456777888888889999999998 66778999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 040371 253 YLKRWDTAENVREIMKKK 270 (410)
Q Consensus 253 ~~g~~~~a~~~~~~m~~~ 270 (410)
..|+.+.|++.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999977653
No 149
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.017 Score=50.83 Aligned_cols=158 Identities=13% Similarity=0.053 Sum_probs=104.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhccc----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----------
Q 040371 75 NFILSAALIDMYSKCGKIQMAKEVFDTVQR----NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVL----------- 139 (410)
Q Consensus 75 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----------- 139 (410)
+..+.+...-...+.|+.+.|.+-|+...+ .....||..+..|. .|+...|++...++.+.|++
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~-~~qyasALk~iSEIieRG~r~HPElgIGm~t 221 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS-SRQYASALKHISEIIERGIRQHPELGIGMTT 221 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh-hhhHHHHHHHHHHHHHhhhhcCCccCcccee
Confidence 344444455556788999999999998764 25678998877664 68999999999999887743
Q ss_pred --CCHH--------HHHHHHHHH-------HccCCHHHHHHHHHHhhhhcCCCCChhHHHHHH--HHHHhcCCHHHHHHH
Q 040371 140 --PDSI--------TFLGLLTAC-------SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV--DLLGRAGHIEEAYGL 200 (410)
Q Consensus 140 --p~~~--------t~~~ll~a~-------~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~ 200 (410)
||.. .-+.++.++ .+.|+.+.|.+.+-.|..+..-+.|+.|...+. ++=++-+.--+-+.+
T Consensus 222 egiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqF 301 (459)
T KOG4340|consen 222 EGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQF 301 (459)
T ss_pred ccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHH
Confidence 2211 112333333 467899999999988875544445555554433 333322222222333
Q ss_pred HHhCCCCC-CHHHHHHHHHHHHhcCchhHHHHHHHh
Q 040371 201 ITSMTMEP-DVVVWRALLSACRTFKRLELGEVAIVN 235 (410)
Q Consensus 201 ~~~m~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~ 235 (410)
+-. +.| ...||..++-.|+++.-++.|-.++.+
T Consensus 302 LL~--~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 302 LLQ--QNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHh--cCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 333 344 457899999999999999999888544
No 150
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.40 E-value=0.035 Score=52.91 Aligned_cols=201 Identities=13% Similarity=0.103 Sum_probs=113.2
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 040371 22 FDEALRFFREMLSSKVEPDKFTFASVIYGCARLG---ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEV 98 (410)
Q Consensus 22 ~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 98 (410)
.+++.+++++....-..-+..+|..+..-=-..- ..+....+++.+++.-...-..+|..+|+.--|..-+..|+.+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4555555555544323334445444433222111 2445555555555443222234566667766777777777777
Q ss_pred HHhccc----C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhhc
Q 040371 99 FDTVQR----N-DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDS-ITFLGLLTACSHCGLVEEGRKYFDHMRSRY 172 (410)
Q Consensus 99 f~~m~~----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 172 (410)
|.+..+ + ++...++++.-|+ .++.+-|..+|+-=++. -+|. .-....+.-+.+.++-..++.+|+.....
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s- 464 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS- 464 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-
Confidence 776653 1 5566677777665 46667777777643332 1222 22344566666777777777777777764
Q ss_pred CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC----C--CCCCHHHHHHHHHHHHhcCch
Q 040371 173 SIQPQ--LEHYGAMVDLLGRAGHIEEAYGLITSM----T--MEPDVVVWRALLSACRTFKRL 226 (410)
Q Consensus 173 ~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m----~--~~p~~~~~~~li~~~~~~g~~ 226 (410)
++.|+ ...|..+|+-=..-|++..+.++-+++ + ..|....-..+++-|...+..
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccc
Confidence 55555 467777777777777777777776665 2 223333344455555555443
No 151
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.39 E-value=0.0037 Score=59.10 Aligned_cols=119 Identities=13% Similarity=0.045 Sum_probs=65.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHc--CCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc----CChhhH
Q 040371 37 VEPDKFTFASVIYGCARLGALNHAYWVHNLIIEK--KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR----NDVSVW 110 (410)
Q Consensus 37 ~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~ 110 (410)
.+.+......+++.+....+++.+..++-+.... ....-..+..++|..|.+.|..+.+..++..=.. ||-.++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445555666666666666666666655555443 1112223344666666666666666665554332 455666
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 040371 111 NAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHC 155 (410)
Q Consensus 111 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 155 (410)
|.+|+.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666666665555555555555555555443
No 152
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.077 Score=51.14 Aligned_cols=215 Identities=10% Similarity=-0.040 Sum_probs=139.4
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHH--HHHHH--HHc
Q 040371 45 ASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNA--MISGV--AIH 120 (410)
Q Consensus 45 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~--li~~~--~~~ 120 (410)
-+=++-+...+++++|.+.-.+++..+ +.|...+..=+-+..+.+++++|.++.+.-..- .+++. +=.+| .+.
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHc
Confidence 344556677889999999999999887 556777777777889999999999776654321 22222 23444 468
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 040371 121 GLAADASAIFTKMEMFNVLPDS-ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199 (410)
Q Consensus 121 g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 199 (410)
++.++|+..++ |..++. .+...-...|.+.|++++|..+|+.+.+...-..+...-..++.. +---.+.
T Consensus 93 nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~- 162 (652)
T KOG2376|consen 93 NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ- 162 (652)
T ss_pred ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH-
Confidence 99999999988 344433 355555677889999999999999998641111122222222221 1112222
Q ss_pred HHHhCCCCCCHHHHHHHH---HHHHhcCchhHHHHHHHhh--------ccCCC----------chHHHHHHHHHhcCChh
Q 040371 200 LITSMTMEPDVVVWRALL---SACRTFKRLELGEVAIVNI--------SRLMG----------GDYVLLSNMYCYLKRWD 258 (410)
Q Consensus 200 ~~~~m~~~p~~~~~~~li---~~~~~~g~~~~a~~~~~~~--------~~~~~----------~~~~~l~~~~~~~g~~~ 258 (410)
+.+..+..| ..+|..+- ..+...|++..|++++..- ...+. ..-.-|..++...|+.+
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 566667666 33333333 3456789999999983332 22211 12334667788999999
Q ss_pred HHHHHHHHHHhCCCc
Q 040371 259 TAENVREIMKKKGVR 273 (410)
Q Consensus 259 ~a~~~~~~m~~~g~~ 273 (410)
+|..++.....++..
T Consensus 242 ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 242 EASSIYVDIIKRNPA 256 (652)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999998887653
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.35 E-value=0.0052 Score=47.24 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=9.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 040371 113 MISGVAIHGLAADASAIFTKME 134 (410)
Q Consensus 113 li~~~~~~g~~~~A~~l~~~m~ 134 (410)
+...+.+.|++++|...|++..
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~~ 66 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAVV 66 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHHH
Confidence 3333444444444444444433
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.35 E-value=0.0013 Score=47.37 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=42.9
Q ss_pred hCCHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHhcc--cCChhhHHHHHHHHHHcCChHHHHHHH
Q 040371 54 LGALNHAYWVHNLIIEKKIE-LNFILSAALIDMYSKCGKIQMAKEVFDTVQ--RNDVSVWNAMISGVAIHGLAADASAIF 130 (410)
Q Consensus 54 ~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~ 130 (410)
.|+++.|..+++++.+.... ++...+-.+..+|.+.|++++|..++++.. ..+....-.+..+|.+.|++++|++.|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 35666666666666665431 234444446666666666666666665521 122233334455566666666666666
Q ss_pred HH
Q 040371 131 TK 132 (410)
Q Consensus 131 ~~ 132 (410)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 155
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.34 E-value=0.0037 Score=59.07 Aligned_cols=120 Identities=10% Similarity=0.071 Sum_probs=94.0
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc-C-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 040371 71 KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR-N-----DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSIT 144 (410)
Q Consensus 71 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 144 (410)
+.+.+......+++......+++.+..++-+... | -..|..++|..|...|..++++.+++.=..-|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3445566666777777777888889888877653 2 123567999999999999999999999889999999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhc
Q 040371 145 FLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRA 191 (410)
Q Consensus 145 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 191 (410)
|+.|+..+.+.|++..|.++...|... ....+..++.-.+..+.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 999999999999999999999998865 5555556655544444443
No 156
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.09 Score=45.43 Aligned_cols=82 Identities=13% Similarity=0.106 Sum_probs=36.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 040371 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199 (410)
Q Consensus 120 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 199 (410)
.|++++|+++++...+.. +.|.+++--=+...-..|.--+|++-+....+ .+..|...|.-+-+.|...|++++|.-
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 344555555555544443 22333333333333334444444444444443 233345555555555555555555544
Q ss_pred HHHhC
Q 040371 200 LITSM 204 (410)
Q Consensus 200 ~~~~m 204 (410)
.++++
T Consensus 176 ClEE~ 180 (289)
T KOG3060|consen 176 CLEEL 180 (289)
T ss_pred HHHHH
Confidence 44444
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.31 E-value=0.014 Score=57.38 Aligned_cols=140 Identities=9% Similarity=0.012 Sum_probs=84.2
Q ss_pred CCCCCHHHHHHHHHHHHhhC-----CHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhc--------CCHHHHHHHHHh
Q 040371 36 KVEPDKFTFASVIYGCARLG-----ALNHAYWVHNLIIEKKIELN-FILSAALIDMYSKC--------GKIQMAKEVFDT 101 (410)
Q Consensus 36 g~~pd~~t~~~ll~a~~~~~-----~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~--------g~~~~A~~~f~~ 101 (410)
+.+.|...|...+.+..... +.+.|..+|+++++.. |+ ...+..+..+|... +++..+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34566677777776654322 2556777777777653 33 33343333323221 123344444443
Q ss_pred cc-----cCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCC
Q 040371 102 VQ-----RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP 176 (410)
Q Consensus 102 m~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~ 176 (410)
.. ..+...|.++.......|++++|...|++.... .|+...|..+...+...|+.++|.+.++... .+.|
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~---~L~P 484 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAF---NLRP 484 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCC
Confidence 21 224456777766666678888888888888774 3677778888888888888888888888776 3345
Q ss_pred ChhHHH
Q 040371 177 QLEHYG 182 (410)
Q Consensus 177 ~~~~~~ 182 (410)
...+|.
T Consensus 485 ~~pt~~ 490 (517)
T PRK10153 485 GENTLY 490 (517)
T ss_pred CCchHH
Confidence 444443
No 158
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.30 E-value=0.0025 Score=53.70 Aligned_cols=97 Identities=21% Similarity=0.308 Sum_probs=72.1
Q ss_pred HHHHHhc--ccCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-------------
Q 040371 96 KEVFDTV--QRNDVSVWNAMISGVAIH-----GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHC------------- 155 (410)
Q Consensus 96 ~~~f~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 155 (410)
...|+.. ..+|..+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 456777777777777653 66777777778888888888888888888776542
Q ss_pred ---CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC
Q 040371 156 ---GLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGH 193 (410)
Q Consensus 156 ---g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 193 (410)
.+.+-|.+++++|.. +|+-||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 235778888999885 5899999999988888887664
No 159
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.25 E-value=0.0041 Score=52.42 Aligned_cols=87 Identities=10% Similarity=0.090 Sum_probs=43.6
Q ss_pred CChhHHHHHHHHHHHc-----CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhC----------------CHHHHHH
Q 040371 4 KDVVSWNSMIGGFVRN-----ARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG----------------ALNHAYW 62 (410)
Q Consensus 4 ~~~~~~n~li~~~~~~-----g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~----------------~~~~a~~ 62 (410)
+|-.+|..+|..|.+. |+.+=....++.|.+.|+.-|..+|+.||+.+=+.. +-+-|.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 3445555555555543 344444444555555555555555555555443211 2234455
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 040371 63 VHNLIIEKKIELNFILSAALIDMYSKCG 90 (410)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~li~~y~~~g 90 (410)
++++|...|+-||..++..|++.+++.+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 5555555555555555555555554444
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.24 E-value=0.0099 Score=45.63 Aligned_cols=92 Identities=13% Similarity=0.054 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCC--ccHHHHHHH
Q 040371 9 WNSMIGGFVRNARFDEALRFFREMLSSKVEPD----KFTFASVIYGCARLGALNHAYWVHNLIIEKKIE--LNFILSAAL 82 (410)
Q Consensus 9 ~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l 82 (410)
+-.+...+.+.|++++|.+.|.++.... |+ ...+..+..++.+.|+++.|...++.+.+.... ....++..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3444555555666666666665555421 11 123333444455555555555555554443111 112333344
Q ss_pred HHHHHhcCCHHHHHHHHHhc
Q 040371 83 IDMYSKCGKIQMAKEVFDTV 102 (410)
Q Consensus 83 i~~y~~~g~~~~A~~~f~~m 102 (410)
..+|.+.|+.++|.+.|+++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHHhCChHHHHHHHHHH
Confidence 44444444444444444433
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.24 E-value=0.0089 Score=56.04 Aligned_cols=84 Identities=15% Similarity=0.074 Sum_probs=35.7
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 040371 16 FVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMA 95 (410)
Q Consensus 16 ~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 95 (410)
+...|++++|+++|++.++.. +-+...|..+..++...|+++.|...++++++.. +.+...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 334455555555555544431 2233344444444444444444444444444432 12333334444444444444444
Q ss_pred HHHHHh
Q 040371 96 KEVFDT 101 (410)
Q Consensus 96 ~~~f~~ 101 (410)
...|++
T Consensus 90 ~~~~~~ 95 (356)
T PLN03088 90 KAALEK 95 (356)
T ss_pred HHHHHH
Confidence 444443
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.21 E-value=0.01 Score=47.68 Aligned_cols=89 Identities=8% Similarity=-0.111 Sum_probs=52.9
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcc---cCChhhHHHHHHHHHHcCC
Q 040371 46 SVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ---RNDVSVWNAMISGVAIHGL 122 (410)
Q Consensus 46 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~ 122 (410)
.+...+...|+++.|..+|+.+.... +.+..-|-.|.-++-..|++++|+..|.... ..|..++-.+..+|...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Confidence 33344456666666666666666653 2345555666666666666666666666543 2245555556666666666
Q ss_pred hHHHHHHHHHHHH
Q 040371 123 AADASAIFTKMEM 135 (410)
Q Consensus 123 ~~~A~~l~~~m~~ 135 (410)
.+.|.+-|+....
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665544
No 163
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.20 E-value=0.056 Score=54.09 Aligned_cols=212 Identities=10% Similarity=0.079 Sum_probs=127.3
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 040371 18 RNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE 97 (410)
Q Consensus 18 ~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 97 (410)
+.|-.++|+.+|++-.+ |..+=..|-..|.+++|.++-+.=-+..+. .+|.....-+-..++.+.|++
T Consensus 812 eLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHH
Confidence 45777888888877654 233344556677788777765433222222 234344444445666777777
Q ss_pred HHHhcccC-----------------------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 040371 98 VFDTVQRN-----------------------DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154 (410)
Q Consensus 98 ~f~~m~~~-----------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 154 (410)
.|++...+ |...|.=...-.-..|+.+.|+.+|...+. |-+++...+-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEee
Confidence 77654321 333333333333446778888887776543 4556677778
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHH
Q 040371 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIV 234 (410)
Q Consensus 155 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 234 (410)
.|+.++|-++-++-. |....-.|.+.|-..|++.+|..+|-+. .++...|..|..++--++-..+..
T Consensus 951 qGk~~kAa~iA~esg-------d~AAcYhlaR~YEn~g~v~~Av~FfTrA------qafsnAIRlcKEnd~~d~L~nlal 1017 (1416)
T KOG3617|consen 951 QGKTDKAARIAEESG-------DKAACYHLARMYENDGDVVKAVKFFTRA------QAFSNAIRLCKENDMKDRLANLAL 1017 (1416)
T ss_pred ccCchHHHHHHHhcc-------cHHHHHHHHHHhhhhHHHHHHHHHHHHH------HHHHHHHHHHHhcCHHHHHHHHHh
Confidence 899999999876643 5556777899999999999999999875 244555555555544333333311
Q ss_pred hhccCC-----------CchHHHHHHHHHhcCChhHHHHH
Q 040371 235 NISRLM-----------GGDYVLLSNMYCYLKRWDTAENV 263 (410)
Q Consensus 235 ~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~ 263 (410)
-..+.+ +....-.+..|-++|.+.+|.++
T Consensus 1018 ~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALel 1057 (1416)
T KOG3617|consen 1018 MSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALEL 1057 (1416)
T ss_pred hcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHH
Confidence 111111 11223455678888888888775
No 164
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.0075 Score=54.28 Aligned_cols=121 Identities=14% Similarity=0.122 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHH-HHHHH
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG-AMVDL 187 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-~li~~ 187 (410)
--.+|.+.+.-..++++++-.+.....--..-|.+.| .+..|.+..|++.+|+++|-.+... .++ |..+|- .|.++
T Consensus 361 GRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArC 437 (557)
T KOG3785|consen 361 GRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARC 437 (557)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHH
Confidence 3445555555556666666666666554333333333 3566777777777777777666531 222 334443 34466
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCchhHHHHH
Q 040371 188 LGRAGHIEEAYGLITSMTMEPDVVVWRALL-SACRTFKRLELGEVA 232 (410)
Q Consensus 188 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~li-~~~~~~g~~~~a~~~ 232 (410)
|.++++++-|.+++-++.-..+..+.-.+| .-|-+.+.+=-|-++
T Consensus 438 yi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKA 483 (557)
T KOG3785|consen 438 YIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKA 483 (557)
T ss_pred HHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777764333444433333 346666666555555
No 165
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.14 E-value=0.37 Score=48.92 Aligned_cols=211 Identities=12% Similarity=0.121 Sum_probs=132.0
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 040371 17 VRNARFDEALRFFREMLSSKVEPDKFTFASVIYGC--ARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQM 94 (410)
Q Consensus 17 ~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 94 (410)
...+++.+|+....++.+. .|| ..|..++.|+ .+.|..++|..+++.....+.. |..+...+-.+|...|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 4567889999988888765 344 3455666666 5788899998887777665533 88888999999999999999
Q ss_pred HHHHHHhccc--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----------CHHHHH
Q 040371 95 AKEVFDTVQR--NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG----------LVEEGR 162 (410)
Q Consensus 95 A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----------~~~~a~ 162 (410)
|..+|++..+ |+......+..+|++.+.+.+-.+.=-+|.+. ++-+.+.|-++++.....- .+..|.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 9999998875 44444555666777777665444333333332 3445677777777665421 245677
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh-C-CCCC--CHHHHHHHHHHHHhcCchhHHHHH
Q 040371 163 KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS-M-TMEP--DVVVWRALLSACRTFKRLELGEVA 232 (410)
Q Consensus 163 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m-~~~p--~~~~~~~li~~~~~~g~~~~a~~~ 232 (410)
+.++.+.++.|-.-+..-.---...+...|++++|.+++.. . ...+ +...-+--+.-+...+++.+-.++
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 77777776543111211112222335567888898888733 2 1111 333333444555566666666666
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.12 E-value=0.014 Score=54.65 Aligned_cols=102 Identities=15% Similarity=0.004 Sum_probs=85.7
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc--C-ChhhHHHHHHHHHHcCChH
Q 040371 48 IYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR--N-DVSVWNAMISGVAIHGLAA 124 (410)
Q Consensus 48 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~ 124 (410)
...+...|+++.|.+.+.++++.. +.+...+..+..+|.+.|++++|...+++... | +...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 455668899999999999999875 45788899999999999999999999998864 3 5668999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040371 125 DASAIFTKMEMFNVLPDSITFLGLLTAC 152 (410)
Q Consensus 125 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 152 (410)
+|+..|++... +.|+...+...+..|
T Consensus 88 eA~~~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 88 TAKAALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 99999999987 457666666666555
No 167
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.11 E-value=0.022 Score=44.02 Aligned_cols=108 Identities=9% Similarity=0.080 Sum_probs=71.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHH
Q 040371 113 MISGVAIHGLAADASAIFTKMEMFNVLPD--SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP-QLEHYGAMVDLLG 189 (410)
Q Consensus 113 li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~ 189 (410)
+..++-..|+.++|+.+|++....|...+ ...+..+.+.+...|++++|..+|+.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44567778999999999999988876654 34566778888899999999999998876422111 1222223344677
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 040371 190 RAGHIEEAYGLITSMTMEPDVVVWRALLSACR 221 (410)
Q Consensus 190 ~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~ 221 (410)
..|+.++|...+-.. +.++...|.--|..|+
T Consensus 87 ~~gr~~eAl~~~l~~-la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA-LAETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 889999988776543 1234445555555543
No 168
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.11 E-value=0.0042 Score=56.96 Aligned_cols=253 Identities=10% Similarity=0.007 Sum_probs=158.3
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhhCCHHHHHHHHHHHH--Hc--CCC-ccHHHHHHHHHH
Q 040371 15 GFVRNARFDEALRFFREMLSSKVEPDKF----TFASVIYGCARLGALNHAYWVHNLII--EK--KIE-LNFILSAALIDM 85 (410)
Q Consensus 15 ~~~~~g~~~~a~~l~~~m~~~g~~pd~~----t~~~ll~a~~~~~~~~~a~~~~~~~~--~~--g~~-~~~~~~~~li~~ 85 (410)
-+++.|+.+..+.+|+..++.|.. |.. .|..+-+||.-++++++|.++|..=+ .. |-+ -.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 467899999999999999987733 443 46667788888999999999875322 11 100 012223344445
Q ss_pred HHhcCCHHHHHHHHHh-cc------cC--ChhhHHHHHHHHHHcCC--------------------hHHHHHHHHHHHH-
Q 040371 86 YSKCGKIQMAKEVFDT-VQ------RN--DVSVWNAMISGVAIHGL--------------------AADASAIFTKMEM- 135 (410)
Q Consensus 86 y~~~g~~~~A~~~f~~-m~------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~~- 135 (410)
+--.|.+++|.-.-.+ +. .+ ...++..+...|...|+ ++.|.++|.+=++
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 5556677776543322 11 11 12244445666655543 2344455543222
Q ss_pred ---CCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHh---hhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC---
Q 040371 136 ---FNVL-PDSITFLGLLTACSHCGLVEEGRKYFDHM---RSRYSIQPQ-LEHYGAMVDLLGRAGHIEEAYGLITSM--- 204 (410)
Q Consensus 136 ---~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m--- 204 (410)
.|-. .-...|..|-+.|.-.|+++.|...++.- .+.+|-... -..+..+..++.-.|+++.|.+.++..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1110 11234666666667789999999887753 233453322 357788888999999999998888765
Q ss_pred ----CCC-CCHHHHHHHHHHHHhcCchhHHHHH-------HHhhcc--CCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040371 205 ----TME-PDVVVWRALLSACRTFKRLELGEVA-------IVNISR--LMGGDYVLLSNMYCYLKRWDTAENVREIMK 268 (410)
Q Consensus 205 ----~~~-p~~~~~~~li~~~~~~g~~~~a~~~-------~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 268 (410)
+-+ ....+..+|-..|....+++.|+.+ ..++.. .....+-+|.++|...|..++|..+.+.-.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 211 2455677888888888899999888 222222 123568889999999999999987766543
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.11 E-value=0.017 Score=48.01 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKMEMFNVLPD--SITFLGLLTACSHCGLVEEGRKYFDHMR 169 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 169 (410)
.|..+...|...|++++|...|++.......|+ ...+..+...+.+.|++++|...+....
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 99 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL 99 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444455555554444443221111 1334444444455555555555555444
No 170
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.07 E-value=0.061 Score=52.93 Aligned_cols=141 Identities=9% Similarity=0.041 Sum_probs=92.9
Q ss_pred cCCCccHHHHHHHHHHHHh--cCC---HHHHHHHHHhccc--CC-hhhHHHHHHHHHHcC--------ChHHHHHHHHHH
Q 040371 70 KKIELNFILSAALIDMYSK--CGK---IQMAKEVFDTVQR--ND-VSVWNAMISGVAIHG--------LAADASAIFTKM 133 (410)
Q Consensus 70 ~g~~~~~~~~~~li~~y~~--~g~---~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g--------~~~~A~~l~~~m 133 (410)
...+.+...|...+.+... .++ .+.|+.+|++..+ || ...|..+..+|.... +...+.+...+.
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3456777888888776543 333 7789999998875 43 345555444443321 123334444433
Q ss_pred HHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH
Q 040371 134 EMF-NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDVV 211 (410)
Q Consensus 134 ~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 211 (410)
... ....+...+..+.-.....|++++|...++++.+ +.|+...|..+...+...|+.++|.+.+++. .+.|...
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 332 1233456676665666677999999999999884 3578889999999999999999999998875 4555544
Q ss_pred HH
Q 040371 212 VW 213 (410)
Q Consensus 212 ~~ 213 (410)
+|
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 44
No 171
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.07 E-value=0.14 Score=49.02 Aligned_cols=208 Identities=15% Similarity=0.110 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc---CCHHHHHHHHHhcccC----ChhhHHHHHHHHHHcCChHHHHHH
Q 040371 57 LNHAYWVHNLIIEKKIELNFILSAALIDMYSKC---GKIQMAKEVFDTVQRN----DVSVWNAMISGVAIHGLAADASAI 129 (410)
Q Consensus 57 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~---g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l 129 (410)
-+++..++++.+..-...+..+|.++.+-=-.. ...+.....++++... -..+|-..++.-.+..-.+.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 356677777776654445666666665422111 1355666666666532 234788888888888889999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---C
Q 040371 130 FTKMEMFNVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM---T 205 (410)
Q Consensus 130 ~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~ 205 (410)
|.+..+.+..+ +....++++.-++ .++..-|.++|+.-.+++|- ++.--...++-+...++-..|..+|++. .
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999998888 6666777776655 57889999999997766553 3445568889999999999999999998 2
Q ss_pred CCCC--HHHHHHHHHHHHhcCchhHHHHHHH---hhcc----CCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 040371 206 MEPD--VVVWRALLSACRTFKRLELGEVAIV---NISR----LMGGDYVLLSNMYCYLKRWDTAENVREIM 267 (410)
Q Consensus 206 ~~p~--~~~~~~li~~~~~~g~~~~a~~~~~---~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 267 (410)
+.|| ..+|..+|.-=...|++..+.++-. ...| .....-..+++.|.-.+....-..=++.|
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 3443 4789999999999999999998811 1112 11234455677777777766555545444
No 172
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.04 E-value=0.049 Score=52.96 Aligned_cols=222 Identities=15% Similarity=0.137 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHcCC--HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 040371 8 SWNSMIGGFVRNAR--FDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM 85 (410)
Q Consensus 8 ~~n~li~~~~~~g~--~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 85 (410)
.++..=.+|.+-.+ +-+.+.-+++|++.|-.||.... ...|+-.|.+.+|.++|. +.|.. |-.+.|
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk---~~G~e------nRAlEm 667 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFK---RSGHE------NRALEM 667 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHH---HcCch------hhHHHH
Confidence 35555567766554 34555566788888888887643 456777889999888875 34432 345667
Q ss_pred HHhcCCHHHHHHHHHhcc---------cC-----ChhhHHHHHHHHHHcCChHHHHHHHHH-----H-HHCCCC---CCH
Q 040371 86 YSKCGKIQMAKEVFDTVQ---------RN-----DVSVWNAMISGVAIHGLAADASAIFTK-----M-EMFNVL---PDS 142 (410)
Q Consensus 86 y~~~g~~~~A~~~f~~m~---------~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~-----m-~~~g~~---p~~ 142 (410)
|.....+|.|.++...-. ++ |+.-=.+....+...|+.++|..+.-+ | .+-+-+ .+.
T Consensus 668 yTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~er 747 (1081)
T KOG1538|consen 668 YTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAER 747 (1081)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhh
Confidence 777777777777664321 11 111112233344456666666654321 1 111112 234
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHH
Q 040371 143 ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT-MEPDVVVWRALLSACR 221 (410)
Q Consensus 143 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~li~~~~ 221 (410)
.+...+..-+.+...+..|-++|..|-+ ...++++....+++++|.++-++.| ..||+.. ....-++
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~--pyaqwLA 815 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYM--PYAQWLA 815 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccc--hHHHHhh
Confidence 4555555556677778888899988763 3467888999999999999999884 4455432 1222234
Q ss_pred hcCchhHHHHHHHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 040371 222 TFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKG 271 (410)
Q Consensus 222 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 271 (410)
...++++|.+ +|.++|+-.+|.++++++....
T Consensus 816 E~DrFeEAqk------------------AfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 816 ENDRFEEAQK------------------AFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred hhhhHHHHHH------------------HHHHhcchHHHHHHHHHhhhhh
Confidence 4445555543 3556667777777776665443
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.01 E-value=0.018 Score=47.62 Aligned_cols=61 Identities=11% Similarity=0.070 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKMEMFNVLP--DSITFLGLLTACSHCGLVEEGRKYFDHMR 169 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 169 (410)
.|..+...+...|++++|+..|++.......| ...++..+...+.+.|+.++|...++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444555555555555555554332111 11244445555555555555555555544
No 174
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.95 E-value=0.24 Score=43.65 Aligned_cols=57 Identities=16% Similarity=0.028 Sum_probs=38.6
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHH---HHHHHHHHhcCCHHHHHHHHHhccc
Q 040371 47 VIYGCARLGALNHAYWVHNLIIEKKIELNFILS---AALIDMYSKCGKIQMAKEVFDTVQR 104 (410)
Q Consensus 47 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~---~~li~~y~~~g~~~~A~~~f~~m~~ 104 (410)
....+...|+++.|.+.|+.+...-..+ .... -.+..+|.+.+++++|...|++..+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~ 97 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR 97 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4444456788888888888887753222 2332 3456677888888888888887753
No 175
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.072 Score=46.26 Aligned_cols=140 Identities=15% Similarity=0.063 Sum_probs=67.2
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 040371 22 FDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT 101 (410)
Q Consensus 22 ~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 101 (410)
.+..+++|++=. .+...+++...-..+.+.-...++...++...+.++.....|+.+-.+.|+.+.|...|++
T Consensus 165 ~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 165 EESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQD 237 (366)
T ss_pred hhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 345555555432 2334445555555555555555555555555455566666666666666666666666664
Q ss_pred cccC----ChhhH-----HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 040371 102 VQRN----DVSVW-----NAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169 (410)
Q Consensus 102 m~~~----~~~~~-----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 169 (410)
..+. |-... -.+...|.-.+++.+|...|.+..... ..|.+..+.-.-...-.|+..+|.+..+.|.
T Consensus 238 vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~ 313 (366)
T KOG2796|consen 238 VEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMV 313 (366)
T ss_pred HHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence 4321 11111 122233444455555555555554432 1122222322222233455666666666655
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.91 E-value=0.0075 Score=41.26 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=24.7
Q ss_pred hCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040371 54 LGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103 (410)
Q Consensus 54 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 103 (410)
.|++++|.++++.+.+.. +.+..+...+..+|.+.|++++|.++++++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555554442 2244445555555555555555555555554
No 177
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.89 E-value=0.015 Score=45.34 Aligned_cols=51 Identities=16% Similarity=0.296 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 040371 137 NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDL 187 (410)
Q Consensus 137 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~ 187 (410)
...|+..+..+++.+|+..|++..|.++.+...+.|+++.+...|..|+.-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 456677777777777777777777777777777777776666677666654
No 178
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.87 E-value=0.016 Score=51.10 Aligned_cols=98 Identities=20% Similarity=0.233 Sum_probs=80.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCH
Q 040371 117 VAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ-LEHYGAMVDLLGRAGHI 194 (410)
Q Consensus 117 ~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~ 194 (410)
..+.+++++|+..|.+.++. .| |.+-|..=..+|++.|.++.|++--+... .+.|. ..+|..|-.+|...|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCcH
Confidence 56689999999999999884 55 66778888899999999999998777766 33444 67899999999999999
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHH
Q 040371 195 EEAYGLITSM-TMEPDVVVWRALLSA 219 (410)
Q Consensus 195 ~~A~~~~~~m-~~~p~~~~~~~li~~ 219 (410)
++|.+.|++. .+.|+-.+|-.=|..
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 9999999886 788988777665544
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.86 E-value=0.0054 Score=41.99 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=28.7
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 040371 155 CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDVVVWRA 215 (410)
Q Consensus 155 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ 215 (410)
.|++++|.++|+.+... .+-+...+..+..+|.+.|++++|..+++++ ...|+...|..
T Consensus 4 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred ccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 45555555555555432 1123444555555555555555555555555 33344433333
No 180
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.84 E-value=0.38 Score=44.20 Aligned_cols=107 Identities=15% Similarity=0.128 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLL 188 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~ 188 (410)
+.+..|.-+...|+...|.++-++.+ -||..-|-..+.+++..+++++-.++-.. ++ ++..|...++.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kK-----sPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--KK-----SPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CC-----CCCChHHHHHHH
Confidence 44555666677787777777766552 46777777788888888888776665432 11 346677888888
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHH
Q 040371 189 GRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI 233 (410)
Q Consensus 189 ~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 233 (410)
.+.|+..+|..++.+++ + ..-+..|.+.|++.+|.+..
T Consensus 248 ~~~~~~~eA~~yI~k~~---~----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP---D----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHCCCHHHHHHHHHhCC---h----HHHHHHHHHCCCHHHHHHHH
Confidence 88888888888877753 2 23445566777777776663
No 181
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.80 E-value=0.018 Score=44.91 Aligned_cols=83 Identities=18% Similarity=0.267 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHh--------------hhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----
Q 040371 143 ITFLGLLTACSHCGLVEEGRKYFDHM--------------RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM---- 204 (410)
Q Consensus 143 ~t~~~ll~a~~~~g~~~~a~~~~~~m--------------~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---- 204 (410)
.++..++.++++.|+++....+.+.. .....+.|+..+..+++.+|+..|++..|+++++..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 44444455555555554444444322 223356788889999999999999999998888776
Q ss_pred CCCCCHHHHHHHHHHHHhcCc
Q 040371 205 TMEPDVVVWRALLSACRTFKR 225 (410)
Q Consensus 205 ~~~p~~~~~~~li~~~~~~g~ 225 (410)
++.-+...|..|+.=+...-+
T Consensus 83 ~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCHHHHHHHHHHHHHhcC
Confidence 666678889888876554443
No 182
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.77 E-value=0.22 Score=49.16 Aligned_cols=218 Identities=13% Similarity=0.080 Sum_probs=112.5
Q ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHc-CCCc--------cHHHHHHHHHHHHhcCCHHHHHHHHHhcccCChh
Q 040371 38 EPDKFTFASVIYGCARLGALNHAYWVHNLIIEK-KIEL--------NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS 108 (410)
Q Consensus 38 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~--------~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~ 108 (410)
.|.+..|..+.......-+++.|+..|-+.... |++. +...-.+=+.+| -|++++|++++-+|..+|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhhh
Confidence 566777777776666666666666655444322 2211 111112223333 37777777777777766542
Q ss_pred hHHHHHHHHHHcCChHHHHHHHH----------------HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH------
Q 040371 109 VWNAMISGVAIHGLAADASAIFT----------------KMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD------ 166 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~----------------~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~------ 166 (410)
|..+.+.|++-...++++ .|-+ .-.+...|......|..+|+.+.-.+.+-
T Consensus 767 -----ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~--~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~ 839 (1189)
T KOG2041|consen 767 -----IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGE--TFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFG 839 (1189)
T ss_pred -----HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhh
Confidence 222333333333333222 1111 00111222333334444443332222111
Q ss_pred Hhhh-hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCc---
Q 040371 167 HMRS-RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGG--- 242 (410)
Q Consensus 167 ~m~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--- 242 (410)
.+.. ...++-+....-.|.+++.+.|.-++|.+.+-+-+.. .+.+..|...+++.+|.++..+..-+...
T Consensus 840 ~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p------kaAv~tCv~LnQW~~avelaq~~~l~qv~tli 913 (1189)
T KOG2041|consen 840 ELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP------KAAVHTCVELNQWGEAVELAQRFQLPQVQTLI 913 (1189)
T ss_pred hHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCc------HHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 1110 0023445667778889999999999998877666422 13455677777777776663332222111
Q ss_pred -----------hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040371 243 -----------DYVLLSNMYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 243 -----------~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 270 (410)
-..--|..+-++|+.-+|.+++.+|.++
T Consensus 914 ak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 914 AKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 1223467788999999999988888654
No 183
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.75 E-value=0.36 Score=48.99 Aligned_cols=193 Identities=16% Similarity=0.148 Sum_probs=129.9
Q ss_pred HHHHHHHHHH--HcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 040371 8 SWNSMIGGFV--RNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM 85 (410)
Q Consensus 8 ~~n~li~~~~--~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 85 (410)
.|...+.++. |.|+.++|..+++.....+.. |..|...+-..|-..+.++++..+|+++.+. -|+......+..+
T Consensus 43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFma 119 (932)
T KOG2053|consen 43 LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMA 119 (932)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHH
Confidence 4555666654 789999999888887655433 7889999999999999999999999999886 4567888888889
Q ss_pred HHhcCCHHH----HHHHHHhcccCChhhHHHHHHHHHHc-CC---------hHHHHHHHHHHHHCC-CCCCHHHHHHHHH
Q 040371 86 YSKCGKIQM----AKEVFDTVQRNDVSVWNAMISGVAIH-GL---------AADASAIFTKMEMFN-VLPDSITFLGLLT 150 (410)
Q Consensus 86 y~~~g~~~~----A~~~f~~m~~~~~~~~~~li~~~~~~-g~---------~~~A~~l~~~m~~~g-~~p~~~t~~~ll~ 150 (410)
|.+.+++.+ |.+++...+++--.-|+.+ +.+.+. .. ..-|...++.+.+.+ -.-+..-...-+.
T Consensus 120 yvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~-Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~ 198 (932)
T KOG2053|consen 120 YVREKSYKKQQKAALQLYKNFPKRAYYFWSVI-SLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLL 198 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccchHHHHH-HHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHH
Confidence 999888754 6667776666555566643 333332 11 224556666666554 2112222333334
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 151 a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
.....|..++|..++..-....-...+...-+--++.+...+++.+..++-.++
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 456788899999999443222122334445556778888999998876665555
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.71 E-value=0.12 Score=46.79 Aligned_cols=158 Identities=10% Similarity=0.041 Sum_probs=77.4
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHc----CCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHhccc-------CC--hhh
Q 040371 44 FASVIYGCARLGALNHAYWVHNLIIEK----KIELN-FILSAALIDMYSKCGKIQMAKEVFDTVQR-------ND--VSV 109 (410)
Q Consensus 44 ~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~~~-~~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~~--~~~ 109 (410)
|.-..+.|...+++++|.+.|.+.... +-+.+ ...|.....+|.+. ++++|...+++..+ ++ ...
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~ 116 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKC 116 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 334444455555555555555544321 11111 12223333334333 55555555544321 11 123
Q ss_pred HHHHHHHHHHc-CChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCC-----CC
Q 040371 110 WNAMISGVAIH-GLAADASAIFTKMEMF----NVLPD--SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ-----PQ 177 (410)
Q Consensus 110 ~~~li~~~~~~-g~~~~A~~l~~~m~~~----g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-----~~ 177 (410)
+..+...|-.. |++++|++.|++..+. | .+. ...+..+...+.+.|++++|.++|++.... ... .+
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~-~l~~~l~~~~ 194 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK-CLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-CCCHCTTGHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-hhcccccchh
Confidence 44455566666 7788888777766542 2 221 234556667777888888888888876643 111 11
Q ss_pred h-hHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 178 L-EHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 178 ~-~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
. ..+-..+-++...|++..|.+.+++.
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 12333344556667777777777765
No 185
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.14 Score=48.90 Aligned_cols=213 Identities=11% Similarity=0.031 Sum_probs=112.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCChh----------hHHHH
Q 040371 44 FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS----------VWNAM 113 (410)
Q Consensus 44 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~----------~~~~l 113 (410)
...+.++.-+..+++.+.+-+....... .+..-++....+|...|.+......-+.-.+.+-. +..-+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4456666666777777777777777664 56666677777777777776665554443332111 12223
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChh-HHHHHHHHHHhcC
Q 040371 114 ISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE-HYGAMVDLLGRAG 192 (410)
Q Consensus 114 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~~li~~~~~~g 192 (410)
-.+|.+.++++.|+..|.+.......||..+- ....+++........ -+.|... ---.-...+.+.|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~---------lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSK---------LKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHH---------HHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhcc
Confidence 34566667777777777776555444433211 112222222222211 1122210 0011133455566
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 040371 193 HIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIM 267 (410)
Q Consensus 193 ~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 267 (410)
++.+|.+.+.++ ...| |...|..-..+|.+.|++..|..- ..+++|.....|.-=..++.-..+|++|.+.|.+-
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665 3334 345565555666666666666554 34445555555555455555556666666666554
Q ss_pred HhC
Q 040371 268 KKK 270 (410)
Q Consensus 268 ~~~ 270 (410)
.+.
T Consensus 453 le~ 455 (539)
T KOG0548|consen 453 LEL 455 (539)
T ss_pred Hhc
Confidence 443
No 186
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.66 E-value=0.84 Score=45.71 Aligned_cols=341 Identities=14% Similarity=0.075 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH-hhCCHHHHHHHHHHHHHc--CC--CccHHHHHH
Q 040371 8 SWNSMIGGFVRNARFDEALRFFREMLSSKVEP-DKFTFASVIYGCA-RLGALNHAYWVHNLIIEK--KI--ELNFILSAA 81 (410)
Q Consensus 8 ~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~a~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~ 81 (410)
.|+.+-..|+-.|.-..|+.+.+.-....-.| |...+-..-..|. +.+.++++..+-.+++.. +. ......+-.
T Consensus 359 ~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~ 438 (799)
T KOG4162|consen 359 RWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLF 438 (799)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHH
Confidence 35555555555555555555554433221113 3333333334443 445566666665555552 11 111223333
Q ss_pred HHHHHHhc----C-------CHHHHHHHHHhccc-----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 040371 82 LIDMYSKC----G-------KIQMAKEVFDTVQR-----NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145 (410)
Q Consensus 82 li~~y~~~----g-------~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 145 (410)
+.-+|... . ...++.+.+++..+ |++.-|-+ --|+..++.+.|++..++..+.+-+-+...+
T Consensus 439 lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~w 516 (799)
T KOG4162|consen 439 LGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAW 516 (799)
T ss_pred HHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHH
Confidence 33333321 1 12344555555432 23333322 3366778899999999998887666677777
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhcCCCC------------------ChhHHHHHHHHHHh---------cC------
Q 040371 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQP------------------QLEHYGAMVDLLGR---------AG------ 192 (410)
Q Consensus 146 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~------------------~~~~~~~li~~~~~---------~g------ 192 (410)
..+.-.++..+++.+|+.+.+.....+|... ...|...+++.+-. .|
T Consensus 517 hLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk 596 (799)
T KOG4162|consen 517 HLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLK 596 (799)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhh
Confidence 7777777888888888888887766554410 11222223322220 00
Q ss_pred --------CHHHHHHHHHh-----------C------C---CC--CC------HHHHHHHHHHHHhcCchhHHHHH---H
Q 040371 193 --------HIEEAYGLITS-----------M------T---ME--PD------VVVWRALLSACRTFKRLELGEVA---I 233 (410)
Q Consensus 193 --------~~~~A~~~~~~-----------m------~---~~--p~------~~~~~~li~~~~~~g~~~~a~~~---~ 233 (410)
+..+|....++ + + .. |+ ...|......+...++.++|... .
T Consensus 597 ~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea 676 (799)
T KOG4162|consen 597 AGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEA 676 (799)
T ss_pred cccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 11111111000 0 0 11 22 23355555667788888888766 4
Q ss_pred HhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHH
Q 040371 234 VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQR 313 (410)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 313 (410)
.++.|..+..|......+...|.+++|.+.|.....-+ |+.--+...+...+ +-.| ++...+...++. .
T Consensus 677 ~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld--P~hv~s~~Ala~~l--le~G---~~~la~~~~~L~----d 745 (799)
T KOG4162|consen 677 SKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD--PDHVPSMTALAELL--LELG---SPRLAEKRSLLS----D 745 (799)
T ss_pred HhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC--CCCcHHHHHHHHHH--HHhC---CcchHHHHHHHH----H
Confidence 45556666778888888889999999999887665432 22111110000000 0011 222222222333 2
Q ss_pred HHHCCcccCCccccccCChH-HHhhhhhhhhHHHHHHHHhcCCCCCCcEEE
Q 040371 314 TKSEGFLPATELVLMDVSEE-EKEGNLYHHSEKLALAYGILKTSPGTEIRI 363 (410)
Q Consensus 314 m~~~g~~pd~~~~~~~~~~~-~~~~~l~~~~e~la~~~~~~~~~~~~~~~~ 363 (410)
+- .+.|+.--....++.. .+.++...-.+....+..+..+.|-.|..+
T Consensus 746 al--r~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pFs~ 794 (799)
T KOG4162|consen 746 AL--RLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPFSN 794 (799)
T ss_pred HH--hhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcccccc
Confidence 22 2344432221222211 234555566778888888888888766544
No 187
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.12 Score=44.83 Aligned_cols=139 Identities=10% Similarity=0.079 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcccC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--
Q 040371 77 ILSAALIDMYSKCGKIQMAKEVFDTVQRN----DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLT-- 150 (410)
Q Consensus 77 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-- 150 (410)
.+-+.++....-.|.+.-....+.+..++ +...-..+.+.-.+.|+.+.|...|++..+..-+.|..+++.++.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 45567777777777777777777766654 456667777777889999999999998877655666666665443
Q ss_pred ---HHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 040371 151 ---ACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDVVVWRALL 217 (410)
Q Consensus 151 ---a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li 217 (410)
.+.-..++..|...|.+.... -..|+..-|.-.-.+...|+..+|.+.++.| +..|...+-++++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~--D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~ 326 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRM--DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVL 326 (366)
T ss_pred hhhheecccchHHHHHHHhhcccc--CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHH
Confidence 333456778888888777643 2234444444334445567899999999998 5667666555444
No 188
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.62 E-value=0.15 Score=52.36 Aligned_cols=153 Identities=13% Similarity=0.022 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 040371 76 FILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD---SITFLGLL 149 (410)
Q Consensus 76 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll 149 (410)
...|..|.+.|...-+...|.+.|+..-+ .|..+|......|+....+++|..+.-.--+ ..|- ...+..+-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q--ka~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ--KAPAFACKENWVQRG 569 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh--hchHHHHHhhhhhcc
Confidence 45788999999988899999999987654 4678999999999999999999998322211 1111 11222334
Q ss_pred HHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH-HHHhcCchh
Q 040371 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDVVVWRALLS-ACRTFKRLE 227 (410)
Q Consensus 150 ~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~-~~~~~g~~~ 227 (410)
-.+...++...+..-|+...+ --+-|...|..+..+|.++|++..|.++|.+. .++|+..--.-.+. .-+..|.++
T Consensus 570 ~yyLea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred ccccCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHH
Confidence 456678888999999988773 22346789999999999999999999999988 46665432221222 235678888
Q ss_pred HHHHH
Q 040371 228 LGEVA 232 (410)
Q Consensus 228 ~a~~~ 232 (410)
++...
T Consensus 648 eald~ 652 (1238)
T KOG1127|consen 648 EALDA 652 (1238)
T ss_pred HHHHH
Confidence 88776
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.60 E-value=0.32 Score=40.14 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=71.3
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCCHHH
Q 040371 72 IELNFILSAALIDMYSKCGKIQMAKEVFDTVQR----NDVSVWNAMISGVAIHGLAADASAIFTKMEMFN---VLPDSIT 144 (410)
Q Consensus 72 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t 144 (410)
..|++.---.|.....+.|+..+|...|++... .|....-.+..+....+++.+|..+++++-+.. -.|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 345555556666666777777777777766542 255555555555566677777777776665532 2333 2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 040371 145 FLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAY 198 (410)
Q Consensus 145 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 198 (410)
...+...+...|...+|+..|+...+- .|+...-...-.++.+.|+.++|.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHH
Confidence 333556666677777777777776632 444444444444556666665553
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.58 E-value=0.014 Score=40.08 Aligned_cols=65 Identities=11% Similarity=0.274 Sum_probs=42.4
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHc
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG-ALNHAYWVHNLIIEK 70 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~ 70 (410)
+..+|..+-..+.+.|++++|+..|.+..+.. +-+...|..+..++...| ++++|.+.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45567777777777777777777777776642 224556666666666666 567777766666553
No 191
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.55 E-value=0.31 Score=50.16 Aligned_cols=143 Identities=17% Similarity=0.048 Sum_probs=87.0
Q ss_pred HhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040371 22 FDEALRFFREMLSSKVEPD-KFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD 100 (410)
Q Consensus 22 ~~~a~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 100 (410)
...|+..|-+-.+. .|+ ...|..+...|....+...|.+-|+...+.. +.|...+.+..+.|++..+++.|..+.-
T Consensus 474 ~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 56666666555443 222 3467777777777667777888888877764 4567778888888888888888887743
Q ss_pred hcccCCh---h--hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 040371 101 TVQRNDV---S--VWNAMISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMR 169 (410)
Q Consensus 101 ~m~~~~~---~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 169 (410)
...+.+. . .|--.--.|...++...|+.-|+...+. .| |...+..+..+|..+|.+..|.++|....
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 3333211 1 2222222344555666666666655542 33 44556666666666666666666665554
No 192
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.50 E-value=0.0094 Score=40.38 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=9.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 040371 110 WNAMISGVAIHGLAADASAIFTKM 133 (410)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~l~~~m 133 (410)
|..+...+.+.|++++|...|++.
T Consensus 34 ~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 34 WYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333444444444444333
No 193
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.49 E-value=0.52 Score=49.41 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcC--CHhHHHHHHHHHHH
Q 040371 9 WNSMIGGFVRNA--RFDEALRFFREMLS 34 (410)
Q Consensus 9 ~n~li~~~~~~g--~~~~a~~l~~~m~~ 34 (410)
.-.+|++|++.+ ..++|+....+.+.
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 446888999988 77888888877764
No 194
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.42 E-value=0.047 Score=48.28 Aligned_cols=100 Identities=16% Similarity=0.118 Sum_probs=76.6
Q ss_pred HHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHH
Q 040371 85 MYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD-SITFLGLLTACSHCGLVEE 160 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 160 (410)
-..+.+++.+|...|.+..+ .|.+-|..-..+|.+.|.++.|++-.+..+. +.|. ..+|..|-.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 34678888888888887653 4677788888889999998888888777665 4453 4678888889999999999
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHH
Q 040371 161 GRKYFDHMRSRYSIQPQLEHYGAMVDLLG 189 (410)
Q Consensus 161 a~~~~~~m~~~~~~~~~~~~~~~li~~~~ 189 (410)
|.+.|+... .+.|+-.+|-.=++.--
T Consensus 168 A~~aykKaL---eldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 168 AIEAYKKAL---ELDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHhhh---ccCCCcHHHHHHHHHHH
Confidence 998888776 56788777766555443
No 195
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.84 Score=43.77 Aligned_cols=213 Identities=14% Similarity=0.074 Sum_probs=134.8
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHH-------HH
Q 040371 9 WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILS-------AA 81 (410)
Q Consensus 9 ~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-------~~ 81 (410)
...+.++..+..++..|++-+....... -+..-++....++...|.+......-...++.|... ..-+ .-
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHHHHHHHHHHH
Confidence 4456677778888999999998887653 344455566667788888877777766666655321 1112 22
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHH
Q 040371 82 LIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSI-TFLGLLTACSHCGLVEE 160 (410)
Q Consensus 82 li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~ 160 (410)
+...|.+.++++.|+..|.+...+-.. =....+....++++.......- +.|... -.-.-.+.+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 344778888999999999885432111 1112223344555555544433 334321 12223566778899999
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHH
Q 040371 161 GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPD-VVVWRALLSACRTFKRLELGEVAI 233 (410)
Q Consensus 161 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~ 233 (410)
|...+.+++++ . +-|...|..-.-+|.+.|.+.+|++=-+.. ...|+ ...|.-=..++....+++.|...+
T Consensus 377 Av~~YteAIkr-~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 377 AVKHYTEAIKR-D-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred HHHHHHHHHhc-C-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998864 2 446788888889999999998887755544 34454 334444445556666777777773
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.37 E-value=0.017 Score=39.60 Aligned_cols=61 Identities=20% Similarity=0.025 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHhc
Q 040371 41 KFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCG-KIQMAKEVFDTV 102 (410)
Q Consensus 41 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~f~~m 102 (410)
..+|..+...+...|++++|...|.+.++.. +.+..++..+..+|.+.| ++++|++.|++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 4455555555566666666666666665553 334555555555566555 455555555543
No 197
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.36 E-value=0.84 Score=42.17 Aligned_cols=124 Identities=10% Similarity=0.039 Sum_probs=63.7
Q ss_pred HHHHHHHHHH--cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhhCCHHHHHHHHHHHHHcCCCccHHH--HHHH
Q 040371 9 WNSMIGGFVR--NARFDEALRFFREMLSSKVEPDKFTFASVIYGC--ARLGALNHAYWVHNLIIEKKIELNFIL--SAAL 82 (410)
Q Consensus 9 ~n~li~~~~~--~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~--~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l 82 (410)
|.+|-.++.- .|+-..|.++-.+-.+. +..|...+..++.+- .-.|+.+.|++-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 4444444443 34455554444433221 344555555555443 3456777777777777642 11111 1122
Q ss_pred HHHHHhcCCHHHHHHHHHhccc--CC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 040371 83 IDMYSKCGKIQMAKEVFDTVQR--ND-VSVWNAMISGVAIHGLAADASAIFTKMEMF 136 (410)
Q Consensus 83 i~~y~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 136 (410)
.----+.|..+.|++.-++.-. |. .-.|.+.+...+..|+++.|+++.+.-+..
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 2222345666666665554432 21 235666777777777777777777665443
No 198
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=1.1 Score=44.92 Aligned_cols=247 Identities=11% Similarity=0.046 Sum_probs=131.9
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcC---------
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKV----EPDKFTFASVIYGCARLGALNHAYWVHNLIIEKK--------- 71 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~----~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--------- 71 (410)
.-+||..+.+---+.|+++.|..+.+.=...+- -.+..-+...+.-+...|+.+...+++-.+.+.-
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l 585 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTL 585 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888877889999999888764322211 0122345566777778888877777665554431
Q ss_pred --CCccHHHHHHHHH--------HHHhcCCHHHHHHHHH--hcc-----cCChhhHHHHHHHHHHcCC----------hH
Q 040371 72 --IELNFILSAALID--------MYSKCGKIQMAKEVFD--TVQ-----RNDVSVWNAMISGVAIHGL----------AA 124 (410)
Q Consensus 72 --~~~~~~~~~~li~--------~y~~~g~~~~A~~~f~--~m~-----~~~~~~~~~li~~~~~~g~----------~~ 124 (410)
.+....+|.-++. -+...++...+...|. ... +.-...-....+.+++... ..
T Consensus 586 ~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~ 665 (829)
T KOG2280|consen 586 RNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQM 665 (829)
T ss_pred HhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 1111122221111 0011111111211111 000 0111112222233333322 11
Q ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 040371 125 DASAIFTKMEMF-NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITS 203 (410)
Q Consensus 125 ~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 203 (410)
.-+.+++.+... |..-...|.+-.+.-+...|+-.+|.++-.+.+ -||-..|---+.+++..+++++-+++-+.
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 112222222221 222333445555666667777777777755443 35677777777888888888887777776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCchHHHHHHHHHhcCChhHHHHHH
Q 040371 204 MTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVR 264 (410)
Q Consensus 204 m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 264 (410)
+. ...-|..+..+|.+.|+.++|.+++-+..+. .-...+|.+.|++.+|.++-
T Consensus 741 kk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 741 KK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----HHHHHHHHHhccHHHHHHHH
Confidence 62 2344666778888888888888775444322 15677788888888877664
No 199
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.30 E-value=0.61 Score=43.46 Aligned_cols=72 Identities=17% Similarity=0.064 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccC---Chh----hHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040371 81 ALIDMYSKCGKIQMAKEVFDTVQRN---DVS----VWNAMISGVAI---HGLAADASAIFTKMEMFNVLPDSITFLGLLT 150 (410)
Q Consensus 81 ~li~~y~~~g~~~~A~~~f~~m~~~---~~~----~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 150 (410)
.|+-.|-...+++...++.+.++.. ++. .-....-++-+ .|+.++|++++..+......++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444566677777777777766643 111 11122333444 5677777777776555555566666665555
Q ss_pred HH
Q 040371 151 AC 152 (410)
Q Consensus 151 a~ 152 (410)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 44
No 200
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.25 E-value=0.096 Score=42.10 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh----hcCCCCChhH
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS----RYSIQPQLEH 180 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~~~~~~ 180 (410)
+...++..+...|++++|+.+.+.+.... +-|...+..++.++...|+...|.++|+.+.+ ..|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44556666777788888888887777642 33667777788888888888888877776542 3466666544
No 201
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.25 E-value=0.031 Score=37.76 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=36.5
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHc
Q 040371 13 IGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEK 70 (410)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 70 (410)
...+.+.|++++|++.|++.++.. +-+...+..+..++...|++++|...++.+++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445667777777777777776653 224556666666667777777777777766654
No 202
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.22 E-value=0.67 Score=39.64 Aligned_cols=178 Identities=12% Similarity=0.078 Sum_probs=86.6
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 040371 11 SMIGGFVRNARFDEALRFFREMLSSKV--EPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSK 88 (410)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~~~g~--~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 88 (410)
.....+.+.|++.+|+..|+++...-. +--....-.+..++-+.|+++.|...++..++.-......-+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 445556688889999999988876421 112234556677788888888888888887775322111111111111111
Q ss_pred cCCHHHHHHHHHhcccCCh-------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 040371 89 CGKIQMAKEVFDTVQRNDV-------SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG 161 (410)
Q Consensus 89 ~g~~~~A~~~f~~m~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 161 (410)
...... .+ ...+|. ..+..+|.-|=......+|...+..+... .-... ..+..-|.+.|.+..|
T Consensus 90 ~~~~~~---~~--~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e-~~ia~~Y~~~~~y~aA 160 (203)
T PF13525_consen 90 YKQIPG---IL--RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEHE-LYIARFYYKRGKYKAA 160 (203)
T ss_dssp HHHHHH---HH---TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHH-HHHHHHHHCTT-HHHH
T ss_pred HHhCcc---ch--hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHcccHHHH
Confidence 110100 00 111111 13333444444444455555444444321 00111 1245567777777777
Q ss_pred HHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 040371 162 RKYFDHMRSRYSIQPQ-LEHYGAMVDLLGRAGHIEEA 197 (410)
Q Consensus 162 ~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A 197 (410)
..-++.+.+++.-.+. ......|+.+|.+.|..+.|
T Consensus 161 ~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 161 IIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 7777777765322221 23445666677777766644
No 203
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.17 E-value=0.046 Score=43.98 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHH-----cCCCccHHH
Q 040371 9 WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIE-----KKIELNFIL 78 (410)
Q Consensus 9 ~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~ 78 (410)
...++..+...|++++|+.+.+++.... +-|...|..+|.++...|+...|.++|+.+.+ .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4455556666777777777777766542 44666777777777777777777776666543 366665544
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.17 E-value=0.076 Score=47.31 Aligned_cols=94 Identities=19% Similarity=0.186 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCC-hhHHHH
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKMEMFNVLPDS----ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ-LEHYGA 183 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~ 183 (410)
.|+..+..+.+.|++++|...|+.+... .|+. ..+..+..++...|++++|...|..+.+.+.-.|. ...+-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4555555455667888888888887764 3432 35556777777888888888888887755332222 334444
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 040371 184 MVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 184 li~~~~~~g~~~~A~~~~~~m 204 (410)
+...|...|+.++|.+++++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 556677778888887777765
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.12 E-value=0.12 Score=46.10 Aligned_cols=94 Identities=14% Similarity=0.022 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHhccc--CC----hhhHHHHH
Q 040371 43 TFASVIYGCARLGALNHAYWVHNLIIEKKIELN--FILSAALIDMYSKCGKIQMAKEVFDTVQR--ND----VSVWNAMI 114 (410)
Q Consensus 43 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~----~~~~~~li 114 (410)
.|...+....+.|++++|...|+.+++.-.... ..++--+...|...|++++|...|+.+.+ |+ ..++-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444333444556666655655555421111 23444555666666666666666666642 21 22344445
Q ss_pred HHHHHcCChHHHHHHHHHHHHC
Q 040371 115 SGVAIHGLAADASAIFTKMEMF 136 (410)
Q Consensus 115 ~~~~~~g~~~~A~~l~~~m~~~ 136 (410)
..|...|+.++|..+|++..+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5566667777777777766653
No 206
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.11 E-value=0.047 Score=47.82 Aligned_cols=100 Identities=16% Similarity=0.187 Sum_probs=81.7
Q ss_pred HHHHHHhcc--cCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-----------
Q 040371 95 AKEVFDTVQ--RNDVSVWNAMISGVAIH-----GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG----------- 156 (410)
Q Consensus 95 A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 156 (410)
.++.|...+ ++|..+|-+++..|... +..+-....++.|.+-|+.-|..+|..||+.+=+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 456677776 67888999999888764 566777778889999999999999999999876532
Q ss_pred -----CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHH
Q 040371 157 -----LVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIE 195 (410)
Q Consensus 157 -----~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 195 (410)
+-+-+..++++|.. +|+.||-.+-..|+.++++.+..-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccH
Confidence 34568899999995 699999999999999999988643
No 207
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.01 E-value=0.76 Score=45.58 Aligned_cols=182 Identities=12% Similarity=0.074 Sum_probs=93.9
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHhccc-CCh------------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 040371 73 ELNFILSAALIDMYSKCGKIQMAKEVFDTVQR-NDV------------SVWNAMISGVAIHGLAADASAIFTKMEMFNVL 139 (410)
Q Consensus 73 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~~~------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 139 (410)
.|.+..|..|.+.-.+.-.++-|+..|-+... +.+ ..-.+=|++| -|.+++|.++|-+|.+..+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhhh
Confidence 57788888888777777777888877766542 111 1122334444 58999999999888654321
Q ss_pred C----CHHHHHHHHHHHHcc--CCHHH-HHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHH-------------HHHH
Q 040371 140 P----DSITFLGLLTACSHC--GLVEE-GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIE-------------EAYG 199 (410)
Q Consensus 140 p----~~~t~~~ll~a~~~~--g~~~~-a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~-------------~A~~ 199 (410)
. ..--|..+...+... +.-|+ -...|+.|-+. -.+...|......|.++|+.+ +-+.
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~---fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~ 843 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGET---FAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEV 843 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHH
Confidence 1 111122222222221 11111 11222222211 012223444444444444433 2222
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 040371 200 LITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREI 266 (410)
Q Consensus 200 ~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 266 (410)
+.+.++ -|....-.+...+...|.-++|.+...+...+. ..+..|....+|.+|.++-+.
T Consensus 844 la~~Lp--e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 844 LARTLP--EDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHhcC--cccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 222221 244455566677788888888888744433222 345667777888777776554
No 208
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.91 E-value=0.035 Score=39.11 Aligned_cols=62 Identities=23% Similarity=0.337 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFREMLSS--KVE---PD-KFTFASVIYGCARLGALNHAYWVHNLII 68 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~--g~~---pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 68 (410)
.+|+.+-..|...|++++|+..|++..+. ... |+ ..++..+..++...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788888888888888888888877542 111 11 3355555666666666666666665554
No 209
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.51 Score=42.06 Aligned_cols=96 Identities=13% Similarity=0.050 Sum_probs=54.2
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHhcc---cCChhhHHHHHHHHHHcC---ChHHHHHHHHHHHHCCCCCC-HHHH
Q 040371 73 ELNFILSAALIDMYSKCGKIQMAKEVFDTVQ---RNDVSVWNAMISGVAIHG---LAADASAIFTKMEMFNVLPD-SITF 145 (410)
Q Consensus 73 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~-~~t~ 145 (410)
+.|..-|--|...|...|+.+.|...|.+.. -+|...+..+..++.... ...++.++|+++... .|+ ..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHH
Confidence 4466666666666666666666666666543 234444444444433321 344666666666653 343 3334
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhh
Q 040371 146 LGLLTACSHCGLVEEGRKYFDHMRS 170 (410)
Q Consensus 146 ~~ll~a~~~~g~~~~a~~~~~~m~~ 170 (410)
..|...+...|++.+|...++.|.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4444566666777777777766663
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.82 E-value=0.31 Score=47.69 Aligned_cols=240 Identities=13% Similarity=0.138 Sum_probs=139.3
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHH---------HHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHH--HHHHHHHHcCCCcc
Q 040371 7 VSWNSMIGGFVRNARFDEALRFF---------REMLSSKVEPDKFTFASVIYGCARLGALNHAY--WVHNLIIEKKIELN 75 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~---------~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~--~~~~~~~~~g~~~~ 75 (410)
+.+.+=+..|...|.+++|..+- +.+-.+ ..+...++..=.||.+..++.--+ .-++.+.++|-.|+
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~ 634 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN 634 (1081)
T ss_pred ccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch
Confidence 44555566777888888876542 111111 112334555556676666654333 33456677787677
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcccC--ChhhHHHH-----HHHHHHcCChHHHHHHHHHHHHC--CC-CCCHHHH
Q 040371 76 FILSAALIDMYSKCGKIQMAKEVFDTVQRN--DVSVWNAM-----ISGVAIHGLAADASAIFTKMEMF--NV-LPDSITF 145 (410)
Q Consensus 76 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--~~~~~~~l-----i~~~~~~g~~~~A~~l~~~m~~~--g~-~p~~~t~ 145 (410)
... +.+.++-.|++.+|-++|.+--.. -...|+-| ..-|...|..++-..+.++-.+- .+ .|..
T Consensus 635 ~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePka--- 708 (1081)
T KOG1538|consen 635 DLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKA--- 708 (1081)
T ss_pred HHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHH---
Confidence 654 344566678888888888765432 22233322 33445556665555554432211 12 2221
Q ss_pred HHHHHHHHccCCHHHHHHH-------------HHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHH
Q 040371 146 LGLLTACSHCGLVEEGRKY-------------FDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVV 212 (410)
Q Consensus 146 ~~ll~a~~~~g~~~~a~~~-------------~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~ 212 (410)
....+..+|+.++|..+ -..+.. .+..+...+..-+-+...+.-|-++|.+|+ |.
T Consensus 709 --AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~-----~ere~l~~~a~ylk~l~~~gLAaeIF~k~g---D~-- 776 (1081)
T KOG1538|consen 709 --AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDK-----AEREPLLLCATYLKKLDSPGLAAEIFLKMG---DL-- 776 (1081)
T ss_pred --HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcch-----hhhhHHHHHHHHHhhccccchHHHHHHHhc---cH--
Confidence 22333345555555543 222221 133444444445556677888899999985 22
Q ss_pred HHHHHHHHHhcCchhHHHHHHHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 040371 213 WRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIM 267 (410)
Q Consensus 213 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 267 (410)
.+++......+++++|..+..+.-..-+.+|.--..-++...++++|.+.|.+.
T Consensus 777 -ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 777 -KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred -HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 245666778899999998877665555667777888889999999999888654
No 211
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.78 E-value=0.75 Score=36.55 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=25.9
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 040371 46 SVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKC 89 (410)
Q Consensus 46 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 89 (410)
.++..+...+.......+++.+.+.+ ..+....|.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 44555555556666666666666655 34566666666666654
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.74 E-value=0.036 Score=39.06 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=8.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 040371 79 SAALIDMYSKCGKIQMAKEVFD 100 (410)
Q Consensus 79 ~~~li~~y~~~g~~~~A~~~f~ 100 (410)
++.+...|.+.|++++|+..|+
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~ 29 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYE 29 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444444444444444443
No 213
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.38 Score=42.83 Aligned_cols=111 Identities=13% Similarity=0.048 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC--C-HHHHHHHHHhcccC---ChhhHH
Q 040371 38 EPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCG--K-IQMAKEVFDTVQRN---DVSVWN 111 (410)
Q Consensus 38 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~-~~~A~~~f~~m~~~---~~~~~~ 111 (410)
+-|...|-.|..+|...|+++.|...|....+.. ++++..+..+...+.... . -.++..+|++.... |+.+-.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 5578899999999999999999999999998873 456666666666544432 2 45788999988743 566777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040371 112 AMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151 (410)
Q Consensus 112 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 151 (410)
-+...+...|++.+|...|+.|.+. -|.......++..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~ 269 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHH
Confidence 7788889999999999999999885 3333445555543
No 214
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.63 E-value=0.22 Score=47.09 Aligned_cols=64 Identities=13% Similarity=0.037 Sum_probs=55.6
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHHc
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDK----FTFASVIYGCARLGALNHAYWVHNLIIEK 70 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 70 (410)
+...|+.+-.+|.+.|++++|+..|++.++. .||. .+|..+..+|+.+|++++|.+.+++.++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4568999999999999999999999998874 5664 35899999999999999999999999885
No 215
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.62 E-value=0.12 Score=35.61 Aligned_cols=57 Identities=16% Similarity=0.146 Sum_probs=44.6
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcC
Q 040371 14 GGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKK 71 (410)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 71 (410)
..|.+++++++|+++++.+...+ +.+...+.....++...|++++|.+.++..++.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 56788888888888888888753 3356677777788888888888888888888764
No 216
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.59 E-value=0.9 Score=36.09 Aligned_cols=121 Identities=12% Similarity=0.183 Sum_probs=72.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 040371 81 ALIDMYSKCGKIQMAKEVFDTVQRN---DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL 157 (410)
Q Consensus 81 ~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 157 (410)
.++..+.+.+.......+++.+... +....|.+|..|++.+ ..+.++.++. .++......++..|.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 4556666667777777777765433 3456777777777653 3444444442 2334445557777777777
Q ss_pred HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 040371 158 VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRA-GHIEEAYGLITSMTMEPDVVVWRALLSACR 221 (410)
Q Consensus 158 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~~~~~li~~~~ 221 (410)
++++..++..+.. |...++.+... ++++.|.+++.+- .+...|..++..+.
T Consensus 85 ~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 85 YEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 7777777766542 33334444444 6677777777663 25567776666554
No 217
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.51 E-value=1.2 Score=36.94 Aligned_cols=138 Identities=12% Similarity=0.031 Sum_probs=84.9
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc
Q 040371 93 QMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY 172 (410)
Q Consensus 93 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 172 (410)
.+|.+-|+.. |.+..--.+..+....|+..||...|++....-..-|......+.++....++...|...++.+.+-.
T Consensus 77 Rea~~~~~~A--pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~ 154 (251)
T COG4700 77 REATEELAIA--PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN 154 (251)
T ss_pred HHHHHHHhhc--hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence 3444444433 34555556777788888888888888887654445567777788888888888888888888876532
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHH
Q 040371 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDVVVWRALLSACRTFKRLELGEVA 232 (410)
Q Consensus 173 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~ 232 (410)
.--.++.+.-.+...|...|++++|+.-|+-. ..-|+...-.-.-.-+.+.|+.+++..-
T Consensus 155 pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 155 PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 11112334455667788888888887777765 3344433222222223455655554443
No 218
>PRK15331 chaperone protein SicA; Provisional
Probab=95.29 E-value=0.14 Score=41.47 Aligned_cols=83 Identities=10% Similarity=0.074 Sum_probs=64.5
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHHH
Q 040371 187 LLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAE 261 (410)
Q Consensus 187 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 261 (410)
-+-..|++++|..+|+-+ -..| |..-|..|-..|-..++++.|... ...+.+.|+.++.-....|...|+.+.|+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 345678888888888876 2223 444566677777778888888888 44566788888999999999999999999
Q ss_pred HHHHHHHh
Q 040371 262 NVREIMKK 269 (410)
Q Consensus 262 ~~~~~m~~ 269 (410)
..|....+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 99988776
No 219
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.28 E-value=0.3 Score=42.99 Aligned_cols=101 Identities=12% Similarity=0.088 Sum_probs=71.0
Q ss_pred CCChhHHHHHHHHHHHc-----CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhC----------------CHHHHH
Q 040371 3 DKDVVSWNSMIGGFVRN-----ARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG----------------ALNHAY 61 (410)
Q Consensus 3 ~~~~~~~n~li~~~~~~-----g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~----------------~~~~a~ 61 (410)
++|-.+|-+++..+... ++++=.-..++.|.+.|+.-|..+|..||+.+-+.. +-+-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 46777888888777654 455556666788888888888888888888765432 223467
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCC-HHHHHHHHHhcc
Q 040371 62 WVHNLIIEKKIELNFILSAALIDMYSKCGK-IQMAKEVFDTVQ 103 (410)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~f~~m~ 103 (410)
.++++|...|+.||-.+-..|++.+++.|- ..+..++.--|+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 788888888888888888888888887765 334444444443
No 220
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.87 Score=42.38 Aligned_cols=250 Identities=11% Similarity=0.047 Sum_probs=136.6
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH
Q 040371 14 GGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQ 93 (410)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 93 (410)
..+.+..++.+|+..+....+.. +-+..-|..=+..+...++++.+.--.+.-++.. +-......-.-.++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHH
Confidence 44555667777777777777653 2234445555555555566655544333333221 000111111222223333333
Q ss_pred HHHHHHH------------hcc---c-----CChhhHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--
Q 040371 94 MAKEVFD------------TVQ---R-----NDVSVWNAM-ISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLT-- 150 (410)
Q Consensus 94 ~A~~~f~------------~m~---~-----~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-- 150 (410)
+|.+.|+ ... . |-..+|-.+ ...+.-.|+.++|.+.--..++.. ++ ..+..+++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~ 211 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGL 211 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhccc
Confidence 3333222 111 0 111233322 233455678888887766655432 11 12222232
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCCCChhH-------------HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-----CHH
Q 040371 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLEH-------------YGAMVDLLGRAGHIEEAYGLITSM-TMEP-----DVV 211 (410)
Q Consensus 151 a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-------------~~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~ 211 (410)
++.-.++.+.|...|++... +.|+-.. +.-=.....+.|++.+|.+.+.+. .+.| +..
T Consensus 212 ~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred ccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 23346778888888887662 3333211 112223456789999999988876 4444 455
Q ss_pred HHHHHHHHHHhcCchhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 040371 212 VWRALLSACRTFKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKG 271 (410)
Q Consensus 212 ~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 271 (410)
.|........+.|+.++|+.- ...+++.-...|..-.+++...++|++|.+-++...+..
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566666667888999998887 555555555556666778888899999999888766543
No 221
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.24 E-value=0.59 Score=45.03 Aligned_cols=162 Identities=20% Similarity=0.185 Sum_probs=104.7
Q ss_pred HHHHcCCHhHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH
Q 040371 15 GFVRNARFDEALRFFR-EMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQ 93 (410)
Q Consensus 15 ~~~~~g~~~~a~~l~~-~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 93 (410)
...-+++++++.+..+ .-.-..++ ..-...++.-+-+.|-.+.|.++-. |+ ..-.+...++|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHH
Confidence 3445688888777664 11111122 4457788888888898988887643 22 13345667899999
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC
Q 040371 94 MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173 (410)
Q Consensus 94 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 173 (410)
.|.++-++.. +...|..|.....+.|+.+-|.+.|.+... |..|+-.|.-.|+.+.-.++.+....+ |
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~ 403 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G 403 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c
Confidence 9988877766 667999999999999999999999987542 566777778888887777777666543 2
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 040371 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP 208 (410)
Q Consensus 174 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 208 (410)
-++....++.-.|+.++..+++.+-+.-|
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~~~~~~~ 432 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLIETGRLP 432 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHTT-HH
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHHHcCCch
Confidence 25555666677788888888888775443
No 222
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.20 E-value=0.12 Score=35.71 Aligned_cols=50 Identities=16% Similarity=0.140 Sum_probs=21.2
Q ss_pred HHhcCCHHHHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040371 86 YSKCGKIQMAKEVFDTVQR--N-DVSVWNAMISGVAIHGLAADASAIFTKMEM 135 (410)
Q Consensus 86 y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 135 (410)
|.+.+++++|.++++++.. | +...|......|.+.|++++|.+.|++..+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444444444444444332 1 233344444444444444444444444443
No 223
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.08 E-value=2.9 Score=38.86 Aligned_cols=241 Identities=16% Similarity=0.155 Sum_probs=155.4
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 040371 18 RNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE 97 (410)
Q Consensus 18 ~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 97 (410)
-.|++++|.+-|+.|...- .--..-+..|.-..-+.|+.+.|++.-+..-... +.=...+.+++...+..|+++.|++
T Consensus 132 ~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 132 LEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred hcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHH
Confidence 4699999999999998631 1111233445555568899999998888776543 2235678899999999999999999
Q ss_pred HHHhcc-----cCChh--hHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHH
Q 040371 98 VFDTVQ-----RNDVS--VWNAMISGVAI---HGLAADASAIFTKMEMFNVLPDSIT-FLGLLTACSHCGLVEEGRKYFD 166 (410)
Q Consensus 98 ~f~~m~-----~~~~~--~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~ 166 (410)
+.+.-. ++|+. .-..|+.+-+. .-+...|.+.-.+..+ +.||-+- -.....++.+.|++.++-.+++
T Consensus 210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 998755 34443 23334433322 3456666665554433 5676433 3344578889999999999999
Q ss_pred HhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCchhHHHHH---HHhhcc
Q 040371 167 HMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM----TMEP-DVVVWRALLSACRTFKRLELGEVA---IVNISR 238 (410)
Q Consensus 167 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~li~~~~~~g~~~~a~~~---~~~~~~ 238 (410)
.+-+. +|.+..+...+ +.+.|+. +++-+++. .++| +..+--.+..+....|++..|..- .....|
T Consensus 288 ~aWK~---ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p 360 (531)
T COG3898 288 TAWKA---EPHPDIALLYV--RARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP 360 (531)
T ss_pred HHHhc---CCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc
Confidence 98754 55555444333 4455543 22222222 3456 456677777888888998888776 333333
Q ss_pred CCCchHHHHHHHHH-hcCChhHHHHHHHHHHhC
Q 040371 239 LMGGDYVLLSNMYC-YLKRWDTAENVREIMKKK 270 (410)
Q Consensus 239 ~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~~ 270 (410)
....|..|.+.-. ..|+-.++...+-+-...
T Consensus 361 -res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 361 -RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred -hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 3356777777654 448888888777655443
No 224
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.99 E-value=0.45 Score=45.09 Aligned_cols=63 Identities=11% Similarity=-0.090 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcc-H---HHHHHHHHHHHhcCCHHHHHHHHHhccc
Q 040371 40 DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELN-F---ILSAALIDMYSKCGKIQMAKEVFDTVQR 104 (410)
Q Consensus 40 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~---~~~~~li~~y~~~g~~~~A~~~f~~m~~ 104 (410)
+...++.+..++...|++++|...|++.++.. |+ . ..|..+..+|.+.|+.++|...|++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34466666666666666666666666666643 33 1 3466666666666666666666666543
No 225
>PRK15331 chaperone protein SicA; Provisional
Probab=94.86 E-value=0.28 Score=39.82 Aligned_cols=85 Identities=15% Similarity=0.048 Sum_probs=63.5
Q ss_pred HHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhc---ccCChhhHHHHHHHHHHcCChHHH
Q 040371 50 GCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV---QRNDVSVWNAMISGVAIHGLAADA 126 (410)
Q Consensus 50 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A 126 (410)
-+-..|++++|..+|..+...+. .+..-+..|..+|-..+++++|...|... ...|....--+..+|...|+.+.|
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 33577888888888888877653 35666788888888888888888888643 234555566667778888888888
Q ss_pred HHHHHHHHH
Q 040371 127 SAIFTKMEM 135 (410)
Q Consensus 127 ~~l~~~m~~ 135 (410)
..-|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888887766
No 226
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.43 E-value=1.8 Score=40.80 Aligned_cols=146 Identities=14% Similarity=0.123 Sum_probs=110.9
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHh-cc-cCChhhH-HHHHH
Q 040371 40 DKFTFASVIYGCARLGALNHAYWVHNLIIEKK-IELNFILSAALIDMYSKCGKIQMAKEVFDT-VQ-RNDVSVW-NAMIS 115 (410)
Q Consensus 40 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~-m~-~~~~~~~-~~li~ 115 (410)
=.+.|...+++..+..-++.|+.+|-++.+.| +.+++.+++++|..|+ .|+..-|.++|+- |. -+|...| +--+.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 35788889999999999999999999999998 6789999999999877 6788889999984 33 3555444 45566
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh
Q 040371 116 GVAIHGLAADASAIFTKMEMFNVLPD--SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGR 190 (410)
Q Consensus 116 ~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 190 (410)
-+..-++-+.|..+|+.-... +..+ ...|..+|..=+.-|++..+..+=+.|.+. .|...+-......|+-
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~---~pQen~~evF~Sry~i 547 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL---VPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH---cCcHhHHHHHHHHHhh
Confidence 677789999999999955432 2222 467899999999999999998888888754 3444444444555544
No 227
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.32 E-value=3.5 Score=36.37 Aligned_cols=176 Identities=11% Similarity=-0.002 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcccC--Ch-h---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040371 76 FILSAALIDMYSKCGKIQMAKEVFDTVQRN--DV-S---VWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149 (410)
Q Consensus 76 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--~~-~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 149 (410)
....-.....+.+.|++++|.+.|+.+... +. . ..-.+..+|.+.+++++|...|++..+.-..-...-+...+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 333334455567789999999999998753 22 1 22345677888999999999999998753222223444444
Q ss_pred HHHHc--c---------------CC---HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC
Q 040371 150 TACSH--C---------------GL---VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD 209 (410)
Q Consensus 150 ~a~~~--~---------------g~---~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 209 (410)
.+.+. . .+ ..+|...|+.+.+++ |+. .-..+|..-+..+..+.-
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKDRLA 175 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHHHHH
Confidence 44331 1 11 234555666666542 222 222233222222210000
Q ss_pred HHHHHHHHHHHHhcCchhHHHHH---HHhhccCCC---chHHHHHHHHHhcCChhHHHHHHHHHH
Q 040371 210 VVVWRALLSACRTFKRLELGEVA---IVNISRLMG---GDYVLLSNMYCYLKRWDTAENVREIMK 268 (410)
Q Consensus 210 ~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 268 (410)
..-+ .+..-|.+.|.+.-|..- +.+.-|..+ .....++.+|.+.|..++|..+...+.
T Consensus 176 ~~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 176 KYEL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0000 122234444544444433 222233332 345567778888888888887776554
No 228
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.28 E-value=1.4 Score=40.03 Aligned_cols=48 Identities=13% Similarity=-0.040 Sum_probs=20.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 040371 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169 (410)
Q Consensus 121 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 169 (410)
|+..+|-..++++++. .+.|...+...=.+|...|+.+.-...++.+.
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIi 164 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKII 164 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhc
Confidence 4444444444444432 22233333334444444444444444444444
No 229
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.22 E-value=1.4 Score=41.48 Aligned_cols=122 Identities=13% Similarity=0.085 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhH-HHHH
Q 040371 107 VSVWNAMISGVAIHGLAADASAIFTKMEMFN-VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH-YGAM 184 (410)
Q Consensus 107 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~~l 184 (410)
..+|-..|+.-.+..-.+.|..+|-+..+.| +.++...+++.+..++ .|+...|..+|+.-...+ ||... -+-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHH
Confidence 3445555554444444555555555555555 3444445555444333 344445555555433221 12222 2233
Q ss_pred HHHHHhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCchhHHHHH
Q 040371 185 VDLLGRAGHIEEAYGLITSM--TMEPD--VVVWRALLSACRTFKRLELGEVA 232 (410)
Q Consensus 185 i~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~li~~~~~~g~~~~a~~~ 232 (410)
+.-+.+.++-+.|..+|+.. .+..+ ...|..+|.--...|++..+..+
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sL 524 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSL 524 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhH
Confidence 44444555555555555533 11112 23455555554555555444444
No 230
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.20 E-value=1.1 Score=34.85 Aligned_cols=49 Identities=12% Similarity=-0.018 Sum_probs=23.0
Q ss_pred HhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 040371 52 ARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT 101 (410)
Q Consensus 52 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 101 (410)
+..|+++.|.+.|.+.+..- +....+||.-..+|--.|+.++|..=+++
T Consensus 54 aE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~ 102 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNK 102 (175)
T ss_pred HhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHH
Confidence 44455555555555444431 23444455555555555555544444443
No 231
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.10 E-value=1.3 Score=34.51 Aligned_cols=135 Identities=10% Similarity=0.052 Sum_probs=73.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 040371 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199 (410)
Q Consensus 120 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 199 (410)
.|..++..++..+..... +..-++-++.-....-+-+-..+.++.+-+-+.+. .+|++.....
T Consensus 15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrVi~ 77 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRVIE 77 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHHHH
T ss_pred hchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHHHH
Confidence 566666666666665432 33445555544444445555555555544322221 2233333333
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHhh---ccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 040371 200 LITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNI---SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVR 273 (410)
Q Consensus 200 ~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 273 (410)
-+-.++ .+..-....+......|.-+.-.++..++ ...++.....+.++|.+.|+..++.+++++.-++|++
T Consensus 78 C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 78 CYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 333322 12333445566777788888777774444 3556677888999999999999999999999999874
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.03 E-value=1 Score=39.66 Aligned_cols=95 Identities=19% Similarity=0.176 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCCh-hHHHHHH
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKMEMFNVL--PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL-EHYGAMV 185 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~li 185 (410)
.|+.-+..| +.|++.+|.+.|....+.... -....+--|..++...|+++.|..+|..+.++++-.|.. ...--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 488877754 578899999999999886311 112335558899999999999999999999887766664 7788888
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 040371 186 DLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 186 ~~~~~~g~~~~A~~~~~~m 204 (410)
....+.|+.++|...|++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 223 VSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 8899999999999999887
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.98 E-value=5.1 Score=39.17 Aligned_cols=177 Identities=13% Similarity=0.084 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcC-CCcc-----HHHHHHHHHHHHh----cCCH
Q 040371 23 DEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKK-IELN-----FILSAALIDMYSK----CGKI 92 (410)
Q Consensus 23 ~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~-----~~~~~~li~~y~~----~g~~ 92 (410)
.-..-+|.-+... +|| .+..+++..+-.||-+.|.+.+....+.+ +... .-.|+..+..+.- ....
T Consensus 174 ~~G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~ 249 (468)
T PF10300_consen 174 YFGFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPL 249 (468)
T ss_pred HHHHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCH
Confidence 3344556666654 444 45667777777888888888888776643 2211 2334455554443 4568
Q ss_pred HHHHHHHHhccc--CChhhHHHHH-HHHHHcCChHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 040371 93 QMAKEVFDTVQR--NDVSVWNAMI-SGVAIHGLAADASAIFTKMEMFN--V-LPDSITFLGLLTACSHCGLVEEGRKYFD 166 (410)
Q Consensus 93 ~~A~~~f~~m~~--~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g--~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 166 (410)
+.|.++++.+.+ |+...|...- ..+...|+.++|++.|++..... . +.....+--+.-.+.-.+++++|...|.
T Consensus 250 ~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 250 EEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 889999998876 6766665543 33456799999999998765321 1 1123344455556777889999999999
Q ss_pred HhhhhcCCCCChhHHHHHHHHHHhcCCH-------HHHHHHHHhC
Q 040371 167 HMRSRYSIQPQLEHYGAMVDLLGRAGHI-------EEAYGLITSM 204 (410)
Q Consensus 167 ~m~~~~~~~~~~~~~~~li~~~~~~g~~-------~~A~~~~~~m 204 (410)
.+.+.....+...+|.. ..+|...|+. ++|.++|++.
T Consensus 330 ~L~~~s~WSka~Y~Y~~-a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 330 RLLKESKWSKAFYAYLA-AACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHhccccHHHHHHHHH-HHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 98865333322333322 2345566766 8888888887
No 234
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=3.8 Score=36.62 Aligned_cols=120 Identities=8% Similarity=-0.011 Sum_probs=83.1
Q ss_pred HHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCch
Q 040371 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRA---LLSACRTFKRL 226 (410)
Q Consensus 150 ~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~---li~~~~~~g~~ 226 (410)
......|++.+|..+|+..... .+-+...--.|..+|...|+.+.|..++..++.+-...-|.. =|..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 3456788899999999887753 222356677788899999999999999999865533333333 23334444444
Q ss_pred hHHHHH--HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 040371 227 ELGEVA--IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKG 271 (410)
Q Consensus 227 ~~a~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 271 (410)
.+...+ -...+|.|...-..|...|...|+.++|.+.+-.+.+++
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 444444 334467777778889999999999999988776665553
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.65 E-value=2.4 Score=41.46 Aligned_cols=171 Identities=14% Similarity=0.089 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc-CC---------hhhHHHHHHHHHH----cCCh
Q 040371 58 NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR-ND---------VSVWNAMISGVAI----HGLA 123 (410)
Q Consensus 58 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~~---------~~~~~~li~~~~~----~g~~ 123 (410)
..+.-+|..++.. +|| ....+++..+=.|+-+.+.+.+.+-.+ ++ ...|+.++..++- ....
T Consensus 174 ~~G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~ 249 (468)
T PF10300_consen 174 YFGFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPL 249 (468)
T ss_pred HHHHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCH
Confidence 3445566666654 344 345666677777888888888776543 22 2357777766654 3567
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCCHHHHHHHHHHhhhhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHH
Q 040371 124 ADASAIFTKMEMFNVLPDSITFLGL-LTACSHCGLVEEGRKYFDHMRSRYSIQP--QLEHYGAMVDLLGRAGHIEEAYGL 200 (410)
Q Consensus 124 ~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~ 200 (410)
+.|.+++..+... -|+...|... ...+...|++++|.+.|+.......--+ ....+--+.-.+.-.+++++|.+.
T Consensus 250 ~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 250 EEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 8899999999874 6887766543 3456678999999999997553111111 223445566678889999999999
Q ss_pred HHhCC-CC-CCHHHHHHHHHHH-HhcCch-------hHHHHHHH
Q 040371 201 ITSMT-ME-PDVVVWRALLSAC-RTFKRL-------ELGEVAIV 234 (410)
Q Consensus 201 ~~~m~-~~-p~~~~~~~li~~~-~~~g~~-------~~a~~~~~ 234 (410)
|.++. .. ....+|.-+..+| ...|+. ++|..++.
T Consensus 328 f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~ 371 (468)
T PF10300_consen 328 FLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFR 371 (468)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHH
Confidence 99983 22 2333444444433 456666 66666633
No 236
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.52 E-value=2.4 Score=38.49 Aligned_cols=148 Identities=13% Similarity=0.039 Sum_probs=88.0
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHc---CCCccHHHHHHHHHHHHhcCCHHHH
Q 040371 19 NARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEK---KIELNFILSAALIDMYSKCGKIQMA 95 (410)
Q Consensus 19 ~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~y~~~g~~~~A 95 (410)
+|++.+|-..++++++. .+.|...+...=.+|.-.|+.+.-+..+++++-. +++...++-..+.-++..+|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 46666777777777764 4557777777777888888877777777777543 3333344444444555677888888
Q ss_pred HHHHHhcccCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 040371 96 KEVFDTVQRND---VSVWNAMISGVAIHGLAADASAIFTKMEMF---NVLPDSITFLGLLTACSHCGLVEEGRKYFDH 167 (410)
Q Consensus 96 ~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 167 (410)
++.-++..+-| .-+-.+....+-.+|+..++.++..+-... +-..-..-|-...-.+...+.++.|+.+|+.
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 87777665433 333344455555677777777766543221 0000112222333344455777888877775
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.40 E-value=2.5 Score=40.82 Aligned_cols=131 Identities=14% Similarity=0.169 Sum_probs=71.3
Q ss_pred HHcCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 040371 118 AIHGLAADASAIFT-KMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196 (410)
Q Consensus 118 ~~~g~~~~A~~l~~-~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 196 (410)
.-.|+++++.++.. .-.-..++ ..-.+.++.-+.+.|..+.|+++-..-.. --+...++|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHHH
Confidence 34566666655554 11111111 33356666666777777777765433221 2334566777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 040371 197 AYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKG 271 (410)
Q Consensus 197 A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 271 (410)
|.++.++.. +...|..|-..+...|+++.|++.+.+. .-+..|+-.|.-.|+.+.-.++.+....+|
T Consensus 337 A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~-----~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA-----KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC-----T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh-----cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 777666553 6667777777777777777777776554 245566667777777766666666655554
No 238
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.39 E-value=3 Score=32.51 Aligned_cols=64 Identities=8% Similarity=0.118 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCC
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI 174 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 174 (410)
-.+..+......|+-+.-.+++.++... -+|++.....+..||.+.|+..++.+++.+.-++ |+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 3455667778888888888888887653 4677777888888888999888888888888765 64
No 239
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.35 E-value=3.4 Score=37.59 Aligned_cols=126 Identities=14% Similarity=0.182 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh--cC----CHHHHHHHHHhcccC-------ChhhHHHHHHHHHHcCC-
Q 040371 57 LNHAYWVHNLIIEKKIELNFILSAALIDMYSK--CG----KIQMAKEVFDTVQRN-------DVSVWNAMISGVAIHGL- 122 (410)
Q Consensus 57 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~--~g----~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~- 122 (410)
++....+++.+.+.|+..+..++-+..-.... .. ....|..+|+.|++. +-.++.+|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45677899999999999888777664443333 22 256789999999853 44567777665 2232
Q ss_pred ---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHc-cCC--HHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 040371 123 ---AADASAIFTKMEMFNVLPD-SITFLGLLTACSH-CGL--VEEGRKYFDHMRSRYSIQPQLEHYGAMV 185 (410)
Q Consensus 123 ---~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~--~~~a~~~~~~m~~~~~~~~~~~~~~~li 185 (410)
.+.+...|+.+...|...+ ..-+.+-+-++.. ... +..+.++++.+.+. |+++...+|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHH
Confidence 4567788888888887664 3333333333332 222 45788889999876 9998888876554
No 240
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=1.4 Score=40.97 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=82.7
Q ss_pred HHHHHhcCCHHHHHHHHHhccc------------------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 040371 83 IDMYSKCGKIQMAKEVFDTVQR------------------NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSIT 144 (410)
Q Consensus 83 i~~y~~~g~~~~A~~~f~~m~~------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 144 (410)
.+.|.|.|++..|..-|++... .-+.+++.+..+|.+.+++.+|++.-.+.+..+ .+|...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 3567888888888887776321 123467788888999999999999999888764 446666
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChh-HHHHHHHHHHhcCCHHH-HHHHHHhC
Q 040371 145 FLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLE-HYGAMVDLLGRAGHIEE-AYGLITSM 204 (410)
Q Consensus 145 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~~li~~~~~~g~~~~-A~~~~~~m 204 (410)
.--=..||...|+++.|+..|+.+.+ +.|+.. .-+.++.+--+.....+ ..++|..|
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k---~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALK---LEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667888889999999999999884 366544 34444444444444433 35677776
No 241
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.12 E-value=7.6 Score=36.38 Aligned_cols=158 Identities=11% Similarity=-0.012 Sum_probs=98.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC--CC-CHHHHHHHHHHHHc---cCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 040371 113 MISGVAIHGLAADASAIFTKMEMFNV--LP-DSITFLGLLTACSH---CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186 (410)
Q Consensus 113 li~~~~~~g~~~~A~~l~~~m~~~g~--~p-~~~t~~~ll~a~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 186 (410)
++-.|-...+++..+++.+.|...-. .+ ....--....|+.+ .|+.++|++++..+... .-.+++.+|..+..
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLLGR 225 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHHHH
Confidence 44458888999999999999986411 11 11111233445566 89999999999995543 55667778877776
Q ss_pred HHHh----c-----CCHHHHHHHHHhC-CCCCCHHH---HHHHHHHHHhcC-chhHHHHH-------HHhhc----cCCC
Q 040371 187 LLGR----A-----GHIEEAYGLITSM-TMEPDVVV---WRALLSACRTFK-RLELGEVA-------IVNIS----RLMG 241 (410)
Q Consensus 187 ~~~~----~-----g~~~~A~~~~~~m-~~~p~~~~---~~~li~~~~~~g-~~~~a~~~-------~~~~~----~~~~ 241 (410)
.|-. . ..+++|...|.+. .++||..+ +.+|+....... .-.+..++ +.+.. ..+.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dY 305 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDY 305 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccH
Confidence 5532 2 2477888888876 55666543 233333322211 11122222 11111 1233
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 040371 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKG 271 (410)
Q Consensus 242 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 271 (410)
..+.++..++.-.|+.++|.+..+.|....
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 456789999999999999999999998663
No 242
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.09 E-value=0.074 Score=30.69 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=24.8
Q ss_pred HhhccCCCchHHHHHHHHHhcCChhHHH
Q 040371 234 VNISRLMGGDYVLLSNMYCYLKRWDTAE 261 (410)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 261 (410)
.++.|.++.+|..|..+|...|++++|+
T Consensus 6 ie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 6 IELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4578999999999999999999999886
No 243
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.86 E-value=2.4 Score=33.58 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=26.9
Q ss_pred HhcCCHHHHHHHHHhcccC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 040371 87 SKCGKIQMAKEVFDTVQRN------DVSVWNAMISGVAIHGLAADASAIFTKMEMF 136 (410)
Q Consensus 87 ~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 136 (410)
.+.|++++|.+.|+.+..+ ...+.-.++.+|.+.|++++|...+++..+.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3455566666666555532 1223344555566666666666666665553
No 244
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.85 E-value=7.3 Score=35.45 Aligned_cols=126 Identities=10% Similarity=0.134 Sum_probs=81.9
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hC----CHHHHHHHHHHHHHcCC---CccHHHHHHHHHHHHhcCCH
Q 040371 22 FDEALRFFREMLSSKVEPDKFTFASVIYGCAR--LG----ALNHAYWVHNLIIEKKI---ELNFILSAALIDMYSKCGKI 92 (410)
Q Consensus 22 ~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~--~~----~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~y~~~g~~ 92 (410)
+++.+.+++.|.+.|.+-+.++|.+....... .. ....+..+|+.|.+.-. .++..++.+|+.+ ...+.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45677888999999999998888876655544 22 35678999999988632 2455666666554 34443
Q ss_pred ----HHHHHHHHhccc-----CCh-hhHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040371 93 ----QMAKEVFDTVQR-----NDV-SVWNAMISGVAIHGL--AADASAIFTKMEMFNVLPDSITFLGLL 149 (410)
Q Consensus 93 ----~~A~~~f~~m~~-----~~~-~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll 149 (410)
+.++.+|+.+.+ .|. ...+.++........ ...+.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 456667766654 233 333333333222222 457899999999999998877766543
No 245
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.84 E-value=5.9 Score=40.45 Aligned_cols=219 Identities=11% Similarity=0.024 Sum_probs=124.4
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHH----CC----------C--CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHc
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFREMLS----SK----------V--EPDKFTFASVIYGCARLGALNHAYWVHNLIIEK 70 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~m~~----~g----------~--~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 70 (410)
.+.|.++.+|...+++-.-.-++....+ .+ + ....-+...-+....+...++.|..+- ...
T Consensus 284 ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LA---k~~ 360 (933)
T KOG2114|consen 284 SSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLA---KSQ 360 (933)
T ss_pred cchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHH---Hhc
Confidence 4567788888887775433333333211 11 0 111223444555556666666665442 333
Q ss_pred CCCccH--HHHHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040371 71 KIELNF--ILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGL 148 (410)
Q Consensus 71 g~~~~~--~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 148 (410)
+.+++. .+.....+-+.+.|++++|...|-+-..- .-=..+|.-|.......+-..+++.+.+.|+. +...-..|
T Consensus 361 ~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlL 437 (933)
T KOG2114|consen 361 HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLL 437 (933)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHH
Confidence 433332 23334445556778888887766543311 11123556666666677777778888887764 33334457
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhH
Q 040371 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLEL 228 (410)
Q Consensus 149 l~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~ 228 (410)
+.+|.+.++.+.-.++.+.-. + |.- ..-....+..+.+.+-+++|..+-.+.+. +......++ -..+++++
T Consensus 438 LncYiKlkd~~kL~efI~~~~-~-g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~--he~vl~ill---e~~~ny~e 508 (933)
T KOG2114|consen 438 LNCYIKLKDVEKLTEFISKCD-K-GEW--FFDVETALEILRKSNYLDEAELLATKFKK--HEWVLDILL---EDLHNYEE 508 (933)
T ss_pred HHHHHHhcchHHHHHHHhcCC-C-cce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc--CHHHHHHHH---HHhcCHHH
Confidence 888888888888777765544 2 211 11234566677777888888777766543 333333333 34677888
Q ss_pred HHHHHHhhccCC
Q 040371 229 GEVAIVNISRLM 240 (410)
Q Consensus 229 a~~~~~~~~~~~ 240 (410)
|.+.+..+.++.
T Consensus 509 Al~yi~slp~~e 520 (933)
T KOG2114|consen 509 ALRYISSLPISE 520 (933)
T ss_pred HHHHHhcCCHHH
Confidence 888877665543
No 246
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.83 E-value=1.1 Score=40.03 Aligned_cols=78 Identities=13% Similarity=0.195 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh----hcCCCCChhHHHHH
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS----RYSIQPQLEHYGAM 184 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~~~~~~~~~l 184 (410)
++..++..+...|+.+.+...++++.... +-|...|..++.+|.+.|....|+..|+++.+ ..|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44444444444555555555555444431 22444455555555555555555544444332 23555555555444
Q ss_pred HHH
Q 040371 185 VDL 187 (410)
Q Consensus 185 i~~ 187 (410)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 247
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.68 E-value=5.4 Score=33.46 Aligned_cols=213 Identities=17% Similarity=0.067 Sum_probs=149.7
Q ss_pred cCCHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHc-CCCccHHHHHHHHHHHHhcCCHHHHH
Q 040371 19 NARFDEALRFFREMLSSKVE-PDKFTFASVIYGCARLGALNHAYWVHNLIIEK-KIELNFILSAALIDMYSKCGKIQMAK 96 (410)
Q Consensus 19 ~g~~~~a~~l~~~m~~~g~~-pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~ 96 (410)
.+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 46677777777777664322 13677888888888899999888888877763 34556677778888888889999999
Q ss_pred HHHHhcccC--C-hhhHHHHHH-HHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 040371 97 EVFDTVQRN--D-VSVWNAMIS-GVAIHGLAADASAIFTKMEMFNV--LPDSITFLGLLTACSHCGLVEEGRKYFDHMRS 170 (410)
Q Consensus 97 ~~f~~m~~~--~-~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 170 (410)
+.+...... + ...+..... .+...|+.+.|...|.+...... ......+......+...++.+.+...+....+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 999877652 2 123333333 68889999999999999855221 12334444555557788999999999999885
Q ss_pred hcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHH
Q 040371 171 RYSIQP-QLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPD-VVVWRALLSACRTFKRLELGEVAI 233 (410)
Q Consensus 171 ~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~ 233 (410)
. ... ....+..+...+...+.+++|...+... ...|+ ...+..+...+...+..+.+...+
T Consensus 196 ~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (291)
T COG0457 196 L--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEAL 259 (291)
T ss_pred h--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHH
Confidence 3 233 3677888888899999999999888877 44454 444555555555666677777763
No 248
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.54 E-value=5.1 Score=32.86 Aligned_cols=136 Identities=6% Similarity=0.021 Sum_probs=76.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcC--CHHHHHHHHHhC
Q 040371 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAG--HIEEAYGLITSM 204 (410)
Q Consensus 127 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m 204 (410)
++.++.+.+.+++|+...+..++..+.+.|.+..-.++++ +++-+|.....+.+-.+.... -..-|++.+.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq-----~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ-----YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh-----hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 3455555666777777777777777777777666555443 344455544444443333221 133345555555
Q ss_pred CCCCCHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 040371 205 TMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGV 272 (410)
Q Consensus 205 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 272 (410)
+.. +..++..+...|++-+|.+++.+....+......++.+-.+.++...-..+++-..+++.
T Consensus 89 ~~~-----~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n~ 151 (167)
T PF07035_consen 89 GTA-----YEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEERNL 151 (167)
T ss_pred hhh-----HHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhhH
Confidence 322 334445556677777777776554444434445566666666666666666666655543
No 249
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.42 E-value=2.7 Score=35.04 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcccCC------hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040371 77 ILSAALIDMYSKCGKIQMAKEVFDTVQRND------VSVWNAMISGVAIHGLAADASAIFTKMEM 135 (410)
Q Consensus 77 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 135 (410)
..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456677788888888888888888876542 23455666777777777777777766654
No 250
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.18 E-value=0.39 Score=27.97 Aligned_cols=26 Identities=12% Similarity=0.432 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHH
Q 040371 8 SWNSMIGGFVRNARFDEALRFFREML 33 (410)
Q Consensus 8 ~~n~li~~~~~~g~~~~a~~l~~~m~ 33 (410)
+|+.|-..|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777778888888888888887744
No 251
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.98 E-value=2 Score=37.81 Aligned_cols=94 Identities=21% Similarity=0.290 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCC-HHHHHHHH
Q 040371 78 LSAALIDMYSKCGKIQMAKEVFDTVQRN------DVSVWNAMISGVAIHGLAADASAIFTKMEMFN-VLPD-SITFLGLL 149 (410)
Q Consensus 78 ~~~~li~~y~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~-~~t~~~ll 149 (410)
.|+.-++.| +.|++..|...|..-.+. ...++.-|...+...|++++|..+|..+.+.- -.|- ...+.-|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 677777654 578899999999887642 22355558899999999999999999998752 2222 35677788
Q ss_pred HHHHccCCHHHHHHHHHHhhhhc
Q 040371 150 TACSHCGLVEEGRKYFDHMRSRY 172 (410)
Q Consensus 150 ~a~~~~g~~~~a~~~~~~m~~~~ 172 (410)
....+.|+.++|...|+++.++|
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC
Confidence 88889999999999999999874
No 252
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.77 E-value=13 Score=35.95 Aligned_cols=156 Identities=13% Similarity=0.134 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 040371 8 SWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYS 87 (410)
Q Consensus 8 ~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 87 (410)
..-+++..+.++....-+..+-.+|+.-| -+...|..++..|... .-+.--.+++++.+..+. |++...-|.+.|-
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence 34567888888888888888888998754 4677889999999888 556777889999888754 6666777777777
Q ss_pred hcCCHHHHHHHHHhcccCCh---------hhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCC
Q 040371 88 KCGKIQMAKEVFDTVQRNDV---------SVWNAMISGVAIHGLAADASAIFTKMEMF-NVLPDSITFLGLLTACSHCGL 157 (410)
Q Consensus 88 ~~g~~~~A~~~f~~m~~~~~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g~ 157 (410)
+ ++.+++..+|.+...+-+ ..|.-++..- ..+.+..+.+..+.+.. |..--.+.+.-+-.-|....+
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 7 888999999887753311 2677776532 35667777777777653 555556777777788899999
Q ss_pred HHHHHHHHHHhhh
Q 040371 158 VEEGRKYFDHMRS 170 (410)
Q Consensus 158 ~~~a~~~~~~m~~ 170 (410)
+++|.+++..+.+
T Consensus 221 ~~eai~Ilk~il~ 233 (711)
T COG1747 221 WTEAIRILKHILE 233 (711)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999997764
No 253
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.63 E-value=5.1 Score=33.36 Aligned_cols=60 Identities=13% Similarity=0.142 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhhCCHHHHHHHHHHH
Q 040371 8 SWNSMIGGFVRNARFDEALRFFREMLSSKVEPDK--FTFASVIYGCARLGALNHAYWVHNLI 67 (410)
Q Consensus 8 ~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~~~~~~ 67 (410)
.|..+..-|.+.|+.++|++.|.++......|.. ..+-.++..+...+++..+.....++
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445555555555555555555555544333322 23444455555555555555444444
No 254
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.41 E-value=0.75 Score=28.14 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 040371 8 SWNSMIGGFVRNARFDEALRFFREMLSS 35 (410)
Q Consensus 8 ~~n~li~~~~~~g~~~~a~~l~~~m~~~ 35 (410)
.|..+...|.+.|++++|.++|++.++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4666777777777777777777777764
No 255
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.20 E-value=6 Score=32.50 Aligned_cols=117 Identities=14% Similarity=0.118 Sum_probs=72.1
Q ss_pred HhcCCHHHHHHHHHhcccCChhhHHHHH-----HHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHH--HHHHHccCCH
Q 040371 87 SKCGKIQMAKEVFDTVQRNDVSVWNAMI-----SGVAIHGLAADASAIFTKMEMFNVLPDSI-TFLGL--LTACSHCGLV 158 (410)
Q Consensus 87 ~~~g~~~~A~~~f~~m~~~~~~~~~~li-----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~l--l~a~~~~g~~ 158 (410)
++.|..++|...|..+.+.+--.|-.|. ...++.|+..+|...|++.-...-.|-.. -..-| .-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 5567778888888888776655555443 34566788888888888876654444322 11111 1233466777
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 159 EEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 159 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
++...-.+.+..+ +-+.....-.+|--+-.+.|++..|..+|..+
T Consensus 149 ~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 149 DDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 7777666665533 33333344456666666778888888888776
No 256
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.00 E-value=10 Score=33.25 Aligned_cols=146 Identities=15% Similarity=0.134 Sum_probs=77.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhc-
Q 040371 115 SGVAIHGLAADASAIFTKMEMFNV--LPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRA- 191 (410)
Q Consensus 115 ~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~- 191 (410)
..-.+.|++++|.+.|+.+..... +-...+...++-++-+.+++++|...+++....++-.|+. -|..-|.+++.-
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~ 120 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFF 120 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhc
Confidence 334567888888888888775421 1134556666777777888888888888877666666654 344444444321
Q ss_pred ------CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCchHHHHHHHHHhcCChhHHHHHHH
Q 040371 192 ------GHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVRE 265 (410)
Q Consensus 192 ------g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 265 (410)
.+...+.+-|..+ ..+|.-|-.+.-...|..-+......-...=..+.+-|.+.|.+..|..-++
T Consensus 121 ~i~~~~rDq~~~~~A~~~f---------~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~ 191 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAF---------KELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFE 191 (254)
T ss_pred cCCccccCHHHHHHHHHHH---------HHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 1111222222221 1122222222222222222111111011112346678899999999999999
Q ss_pred HHHhC
Q 040371 266 IMKKK 270 (410)
Q Consensus 266 ~m~~~ 270 (410)
+|.+.
T Consensus 192 ~v~e~ 196 (254)
T COG4105 192 EVLEN 196 (254)
T ss_pred HHHhc
Confidence 98876
No 257
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.46 E-value=0.67 Score=26.94 Aligned_cols=24 Identities=13% Similarity=0.011 Sum_probs=13.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 040371 110 WNAMISGVAIHGLAADASAIFTKM 133 (410)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~l~~~m 133 (410)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555566666666666666553
No 258
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.07 E-value=12 Score=34.58 Aligned_cols=43 Identities=9% Similarity=0.244 Sum_probs=20.2
Q ss_pred HcCCHhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhhCCHHHH
Q 040371 18 RNARFDEALRFFREMLSS--KVEPDKFTFASVIYGCARLGALNHA 60 (410)
Q Consensus 18 ~~g~~~~a~~l~~~m~~~--g~~pd~~t~~~ll~a~~~~~~~~~a 60 (410)
++.+.++|+..+.+-+.. ...---.+|..+..+.++.|.++++
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~m 62 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEM 62 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH
Confidence 455566666666554432 0111122445555555555555444
No 259
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.93 E-value=14 Score=33.22 Aligned_cols=135 Identities=10% Similarity=0.112 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHHC--------CCCCCH-----HHHHHHHHHHHhhCCHH---HHHHHHHHHHHc
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFREMLSS--------KVEPDK-----FTFASVIYGCARLGALN---HAYWVHNLIIEK 70 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~--------g~~pd~-----~t~~~ll~a~~~~~~~~---~a~~~~~~~~~~ 70 (410)
+.||.-...+.+..++++|...+++..+. ...|+. .++..+..++...+..+ .|..+.+.+...
T Consensus 37 ~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e 116 (278)
T PF08631_consen 37 VCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE 116 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 34666666655554776666665554321 123332 34445555555555443 344455555332
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHH--cCChHHHHHHHHHHHHCCCCCCH
Q 040371 71 KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN---DVSVWNAMISGVAI--HGLAADASAIFTKMEMFNVLPDS 142 (410)
Q Consensus 71 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~ 142 (410)
.+..+.++-.-+..+.+.++.+.+.+++.+|... ....+..++..+-+ ......|...+..+....+.|..
T Consensus 117 -~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 117 -YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred -CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 2223444444455555677777777777776532 22345555544421 23344555666655555444443
No 260
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=89.89 E-value=11 Score=32.00 Aligned_cols=168 Identities=14% Similarity=0.111 Sum_probs=77.4
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCCHHHHHHHHHhccc--CC--hhhHHHHHHHHHHc
Q 040371 47 VIYGCARLGALNHAYWVHNLIIEKKI--ELNFILSAALIDMYSKCGKIQMAKEVFDTVQR--ND--VSVWNAMISGVAIH 120 (410)
Q Consensus 47 ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~--~~~~~~li~~~~~~ 120 (410)
........|+++.|.+.|+.+..... +--....-.++.+|.+.|++++|...|++..+ |+ ...+-..+.+.+.-
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 33445567778888888887776521 11233445566677777888887777777653 21 11222222222111
Q ss_pred CChHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC
Q 040371 121 GLAADASAIFTKMEMFNVLPD-------SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGH 193 (410)
Q Consensus 121 g~~~~A~~l~~~m~~~g~~p~-------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 193 (410)
....... . ...| ..+|..++.-|=.+....+|...+..+... =..+--.+.+.|.+.|.
T Consensus 91 ~~~~~~~-------~--~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~-----la~~e~~ia~~Y~~~~~ 156 (203)
T PF13525_consen 91 KQIPGIL-------R--SDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR-----LAEHELYIARFYYKRGK 156 (203)
T ss_dssp HHHHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCTT-
T ss_pred HhCccch-------h--cccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHccc
Confidence 1000000 0 0011 123334444444555555555555554432 11223345566777777
Q ss_pred HHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCchhH
Q 040371 194 IEEAYGLITSM----TMEP-DVVVWRALLSACRTFKRLEL 228 (410)
Q Consensus 194 ~~~A~~~~~~m----~~~p-~~~~~~~li~~~~~~g~~~~ 228 (410)
+..|..-++.+ |-.| .......++.++...|..+.
T Consensus 157 y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 157 YKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 77776666655 2111 12334455555555555553
No 261
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.79 E-value=2.9 Score=30.88 Aligned_cols=62 Identities=10% Similarity=0.213 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 040371 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186 (410)
Q Consensus 123 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 186 (410)
.-+..+-++.+....+.|+.....+.|.||.+..++..|.++|+.++.+.|-. ...|..++.
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 33555666666667788999999999999999999999999999988764433 336777664
No 262
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.66 E-value=1.6 Score=26.66 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHc
Q 040371 43 TFASVIYGCARLGALNHAYWVHNLIIEK 70 (410)
Q Consensus 43 t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 70 (410)
++..+..++...|++++|+++++++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554
No 263
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=89.61 E-value=6.2 Score=29.09 Aligned_cols=87 Identities=15% Similarity=0.134 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 040371 57 LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMF 136 (410)
Q Consensus 57 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 136 (410)
-++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||+..|-++-. .+.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45666666666554422 33333344556678899999999999999999999988765 4678888888888888777
Q ss_pred CCCCCHHHHHH
Q 040371 137 NVLPDSITFLG 147 (410)
Q Consensus 137 g~~p~~~t~~~ 147 (410)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 6 455555543
No 264
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.44 E-value=3.1 Score=30.38 Aligned_cols=63 Identities=10% Similarity=0.204 Sum_probs=48.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 040371 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186 (410)
Q Consensus 122 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 186 (410)
+.-++.+-++.+....+.|+.....+.|.||.+.+++..|.++|+..+.+.|. +...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 45566667777777788999999999999999999999999999988755332 4446666554
No 265
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.37 E-value=3.7 Score=31.99 Aligned_cols=85 Identities=15% Similarity=0.151 Sum_probs=64.7
Q ss_pred HHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH---HHHHHHHHHHHccCC
Q 040371 85 MYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMF-NVLPDS---ITFLGLLTACSHCGL 157 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~---~t~~~ll~a~~~~g~ 157 (410)
+.+..|+++.|++.|.+... .....||.-..+|.-.|+.++|++=+++..+. |-+ +. ..|.--...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 56788999999999987653 47789999999999999999999988887764 322 22 234444455677888
Q ss_pred HHHHHHHHHHhhh
Q 040371 158 VEEGRKYFDHMRS 170 (410)
Q Consensus 158 ~~~a~~~~~~m~~ 170 (410)
.+.|..=|+...+
T Consensus 131 dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 131 DDAARADFEAAAQ 143 (175)
T ss_pred hHHHHHhHHHHHH
Confidence 8888888887664
No 266
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.32 E-value=5.6 Score=37.14 Aligned_cols=60 Identities=13% Similarity=0.056 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040371 43 TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103 (410)
Q Consensus 43 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 103 (410)
.+..+.-++.+++.+..|++.-...+..+ ++|+-..---..+|...|+++.|+..|+++.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~ 318 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKAL 318 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 44555555556666666666555555554 3344444444555555666666666666554
No 267
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.16 E-value=13 Score=38.25 Aligned_cols=136 Identities=17% Similarity=0.178 Sum_probs=71.9
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 040371 18 RNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE 97 (410)
Q Consensus 18 ~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 97 (410)
+.|++++|..-|-+-... +.|. .++.-+-.......-..+++.+.+.|+. +...-+.|+++|.|.++.++-.+
T Consensus 380 ~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~e 452 (933)
T KOG2114|consen 380 GKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTE 452 (933)
T ss_pred hcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHH
Confidence 456667766666554432 2321 2333333444444455566677777765 55566788999999999888888
Q ss_pred HHHhcccCChh-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 040371 98 VFDTVQRNDVS-VWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM 168 (410)
Q Consensus 98 ~f~~m~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 168 (410)
+.+.-..-... -....+..+.+.+-.++|.-+-.+... +......++ -..+++++|.++++.+
T Consensus 453 fI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 453 FISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 77766521110 123344444455555555544433321 122222222 2345566666555544
No 268
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.11 E-value=0.74 Score=26.44 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=16.5
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHH
Q 040371 73 ELNFILSAALIDMYSKCGKIQMAK 96 (410)
Q Consensus 73 ~~~~~~~~~li~~y~~~g~~~~A~ 96 (410)
+-+..+|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445667777777777777777764
No 269
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.76 E-value=1.1 Score=25.31 Aligned_cols=28 Identities=14% Similarity=0.474 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFREMLS 34 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~m~~ 34 (410)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4677778888888888888888887765
No 270
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.62 E-value=11 Score=30.13 Aligned_cols=89 Identities=6% Similarity=-0.010 Sum_probs=44.0
Q ss_pred hhCCHHHHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCCh-hhHHHHHHHHHHcCChHHHHHHH
Q 040371 53 RLGALNHAYWVHNLIIEKKI-ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDV-SVWNAMISGVAIHGLAADASAIF 130 (410)
Q Consensus 53 ~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~-~~~~~li~~~~~~g~~~~A~~l~ 130 (410)
..++.+.+..+++.|.-.-. .+...++- .-.+...|++++|.++|+++.+... ..|..-+.+++..-..+..+..+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~~ 99 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHVH 99 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHHH
Confidence 45666666666666644310 11222222 3345667777777777777765442 25555555554443333333333
Q ss_pred -HHHHHCCCCCCHH
Q 040371 131 -TKMEMFNVLPDSI 143 (410)
Q Consensus 131 -~~m~~~g~~p~~~ 143 (410)
.++.+.|-.|+..
T Consensus 100 A~~~le~~~~~~a~ 113 (153)
T TIGR02561 100 ADEVLARDADADAV 113 (153)
T ss_pred HHHHHHhCCCHhHH
Confidence 2333444444433
No 271
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.59 E-value=30 Score=35.16 Aligned_cols=103 Identities=17% Similarity=0.074 Sum_probs=79.9
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHhhccCCC
Q 040371 162 RKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMG 241 (410)
Q Consensus 162 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 241 (410)
+.+++.+..++|..-..-+.+--+.-+...|+..+|.++-.+..+ ||-..|-.=+.+++..+++++-+++.....+ |
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-pdKr~~wLk~~aLa~~~kweeLekfAkskks--P 744 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-PDKRLWWLKLTALADIKKWEELEKFAKSKKS--P 744 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-cchhhHHHHHHHHHhhhhHHHHHHHHhccCC--C
Confidence 334555555556554555666667778888999999999888753 6888888889999999999998888766654 5
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHH
Q 040371 242 GDYVLLSNMYCYLKRWDTAENVREIM 267 (410)
Q Consensus 242 ~~~~~l~~~~~~~g~~~~a~~~~~~m 267 (410)
.-|.-.+.+|.+.|+.++|.+++-+.
T Consensus 745 IGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 745 IGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred CCchhHHHHHHhcccHHHHhhhhhcc
Confidence 67888889999999999999887554
No 272
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.52 E-value=13 Score=30.93 Aligned_cols=215 Identities=19% Similarity=0.085 Sum_probs=148.8
Q ss_pred hCCHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHhccc-----CChhhHHHHHHHHHHcCChHHHH
Q 040371 54 LGALNHAYWVHNLIIEKKIE-LNFILSAALIDMYSKCGKIQMAKEVFDTVQR-----NDVSVWNAMISGVAIHGLAADAS 127 (410)
Q Consensus 54 ~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~ 127 (410)
.+....+...+......... ............+...+++..+...+..... .....+......+...+...++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35556666666666555322 1467788888899999999999988887642 34556777777888888999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHhhhhcCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 128 AIFTKMEMFNVLPDSITFLGLLT-ACSHCGLVEEGRKYFDHMRSRYSI--QPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 128 ~l~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
+.+.........+. ........ .+...|+++.+...+...... .. ......+......+...++.+++...+.+.
T Consensus 116 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 99999887544432 22222223 788999999999999998531 21 123344455555577889999999998887
Q ss_pred -CCCCC--HHHHHHHHHHHHhcCchhHHHHHHH---hhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040371 205 -TMEPD--VVVWRALLSACRTFKRLELGEVAIV---NISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 205 -~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 270 (410)
...++ ...+..+-..+...++.+.+...+. ...|.....+..+...+...+.++++...+......
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33444 5777788888888888888888833 333332334555666666777889998888776654
No 273
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.43 E-value=7 Score=35.02 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 040371 43 TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV 102 (410)
Q Consensus 43 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m 102 (410)
++..++.++...++++.+...++.+.... +-+...|..+|.+|.+.|+...|+..|+++
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 33344444444444444444444444432 224444444445555555544444444444
No 274
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.33 E-value=26 Score=34.00 Aligned_cols=138 Identities=11% Similarity=0.039 Sum_probs=72.8
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 040371 18 RNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE 97 (410)
Q Consensus 18 ~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 97 (410)
+..+++.-+++-++.++ +.||-.+.-. +.+--....+.++++++++.++.|-. . |.+....+..-.
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYI-LLAEEeA~Ti~Eae~l~rqAvkAgE~-------~----lg~s~~~~~~g~ 245 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYI-LLAEEEASTIVEAEELLRQAVKAGEA-------S----LGKSQFLQHHGH 245 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHh-hcccccccCHHHHHHHHHHHHHHHHH-------h----hchhhhhhcccc
Confidence 45555555555555554 3454432222 22222345578888888888776411 0 011000000001
Q ss_pred HHHhcccCCh----hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 040371 98 VFDTVQRNDV----SVWNAMISGVAIHGLAADASAIFTKMEMFNVL-PDSITFLGLLTACSHCGLVEEGRKYFDHMR 169 (410)
Q Consensus 98 ~f~~m~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 169 (410)
.++....++. ..-.-+..+.-+.|+.+||++.|++|.+.... -+....-.|+.++...+.+.++..++..-.
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 1122222222 12223445555678888888888888764311 123355668888888888888888887764
No 275
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.03 E-value=17 Score=31.70 Aligned_cols=83 Identities=12% Similarity=0.003 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCC--hhhHHHHHHHHHHc
Q 040371 43 TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRND--VSVWNAMISGVAIH 120 (410)
Q Consensus 43 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~--~~~~~~li~~~~~~ 120 (410)
.|.-...+|-...+++++..-+....+. ...+...|.+ ...++.|.-+..+|..-+ +..|+--...|..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3444455666666777776655544421 1222222211 111233333333333221 22344455666666
Q ss_pred CChHHHHHHHHHH
Q 040371 121 GLAADASAIFTKM 133 (410)
Q Consensus 121 g~~~~A~~l~~~m 133 (410)
|.++-|-..+++.
T Consensus 105 GspdtAAmaleKA 117 (308)
T KOG1585|consen 105 GSPDTAAMALEKA 117 (308)
T ss_pred CCcchHHHHHHHH
Confidence 6666655555543
No 276
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.88 E-value=20 Score=32.23 Aligned_cols=137 Identities=12% Similarity=0.082 Sum_probs=81.1
Q ss_pred HHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCCh-hhH---HHHHHHHHHcCChH
Q 040371 49 YGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDV-SVW---NAMISGVAIHGLAA 124 (410)
Q Consensus 49 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~-~~~---~~li~~~~~~g~~~ 124 (410)
......|++..+..+++...... +-+..+--.|..+|...|+.+.|..+++.++.... ..| .+-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34567788888888888887764 33456667788889999999999999998874321 122 22344444444444
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhh-cCCCCChhHHHHHHHHHHh
Q 040371 125 DASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRSR-YSIQPQLEHYGAMVDLLGR 190 (410)
Q Consensus 125 ~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~~li~~~~~ 190 (410)
+..++-.+.-. .| |...-..+...+...|+.+.|.+.+-.+.++ .|.. |...-..|++.+.-
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~ 284 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEA 284 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHh
Confidence 44444444432 34 4444555666777777777777655554433 2222 33344444444433
No 277
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.86 E-value=43 Score=36.05 Aligned_cols=81 Identities=17% Similarity=0.175 Sum_probs=48.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCchhHHHHHHHhhccCCCchHHHHHHHHHhcCChhHHH
Q 040371 184 MVDLLGRAGHIEEAYGLITSMTMEPDVVV--WRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAE 261 (410)
Q Consensus 184 li~~~~~~g~~~~A~~~~~~m~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 261 (410)
-+.+|..+|++.+|+.+-.++....|... -..|.+-+...++.-+|-+++.+...+ +.-.+..|++...|++|.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd----~~~av~ll~ka~~~~eAl 1046 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD----PEEAVALLCKAKEWEEAL 1046 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC----HHHHHHHHhhHhHHHHHH
Confidence 34556666666666666666533333322 356777777777777777764443322 223445567777888888
Q ss_pred HHHHHHH
Q 040371 262 NVREIMK 268 (410)
Q Consensus 262 ~~~~~m~ 268 (410)
++-..-.
T Consensus 1047 rva~~~~ 1053 (1265)
T KOG1920|consen 1047 RVASKAK 1053 (1265)
T ss_pred HHHHhcc
Confidence 8765544
No 278
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.78 E-value=6.3 Score=33.27 Aligned_cols=67 Identities=10% Similarity=-0.080 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcc-------cCChhhHHHHHHHHHHcCChHHH
Q 040371 59 HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-------RNDVSVWNAMISGVAIHGLAADA 126 (410)
Q Consensus 59 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A 126 (410)
.|.+.|-.+...+.--++....+|...|. ..+.++|..++.+.. +.|+..+.+|++.|-+.|+.+.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444444445555555555554 334455555444332 22445555555555555555554
No 279
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.59 E-value=5.5 Score=35.94 Aligned_cols=98 Identities=12% Similarity=0.204 Sum_probs=72.5
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc-C--------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 040371 70 KKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR-N--------DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP 140 (410)
Q Consensus 70 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 140 (410)
.|.+....+...++..-....+++++...+-++.. + ...+|--++ ..=++++++.++..=.+-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhcccc
Confidence 34555555666677666777888999888877653 2 222333322 2346778999888888889999
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhhhh
Q 040371 141 DSITFLGLLTACSHCGLVEEGRKYFDHMRSR 171 (410)
Q Consensus 141 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 171 (410)
|.+|++.++..+.+.+++.+|.++...|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999988887654
No 280
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.42 E-value=1.5 Score=25.92 Aligned_cols=29 Identities=24% Similarity=0.520 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLS 34 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~ 34 (410)
..+++.|...|...|++++|+.++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35677888888888888888888877653
No 281
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.72 E-value=6.7 Score=28.72 Aligned_cols=48 Identities=15% Similarity=0.181 Sum_probs=35.4
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 040371 21 RFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68 (410)
Q Consensus 21 ~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 68 (410)
+.-++.+-++.+....+.|++....+.|.||-+.+++..|.++++-+.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334455556666666778888888888888888888888888888665
No 282
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.57 E-value=1.7 Score=24.58 Aligned_cols=27 Identities=7% Similarity=0.003 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKMEM 135 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 135 (410)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555556666666666666655554
No 283
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.46 E-value=27 Score=32.32 Aligned_cols=90 Identities=11% Similarity=0.132 Sum_probs=60.9
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCchhHHHHHHHhhccC-------CCchH
Q 040371 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT-MEPDVVVWRALLSACRTFKRLELGEVAIVNISRL-------MGGDY 244 (410)
Q Consensus 173 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~ 244 (410)
...++..+|..++..-.- ++..+. ......+|..+...+++.|+++.|...+...... .+...
T Consensus 117 ~~~~~~~~~~~il~~R~~---------~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~ 187 (352)
T PF02259_consen 117 NMQDDFSVWEPILSLRRL---------VLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVF 187 (352)
T ss_pred HhccchHHHHHHHHHHHH---------HHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchH
Confidence 345566677666643211 222121 2235678999999999999999999985554432 35566
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 040371 245 VLLSNMYCYLKRWDTAENVREIMKKKG 271 (410)
Q Consensus 245 ~~l~~~~~~~g~~~~a~~~~~~m~~~g 271 (410)
..-+...-..|+..+|...++...+..
T Consensus 188 ~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 188 LEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 666788888999999999988877633
No 284
>PRK11906 transcriptional regulator; Provisional
Probab=85.78 E-value=35 Score=32.88 Aligned_cols=43 Identities=9% Similarity=0.126 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 040371 59 HAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV 102 (410)
Q Consensus 59 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m 102 (410)
+|.++-++.++.+ +.|......+.....-.|+++.|...|++.
T Consensus 322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA 364 (458)
T PRK11906 322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQA 364 (458)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence 3444444444443 234444444444444444455555555443
No 285
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=85.64 E-value=37 Score=33.01 Aligned_cols=79 Identities=15% Similarity=0.238 Sum_probs=54.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCC--HHHHHHHHHHHHh
Q 040371 147 GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT-M-EPD--VVVWRALLSACRT 222 (410)
Q Consensus 147 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~--~~~~~~li~~~~~ 222 (410)
.+...+.+.|+.++|.+.|.+|.+.............|+.+|...+.+.++..++.+-. + -|. ...|++.+--++.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 35556668899999999999998653332345577789999999999999999988873 2 233 3456665544444
Q ss_pred cCc
Q 040371 223 FKR 225 (410)
Q Consensus 223 ~g~ 225 (410)
.++
T Consensus 344 v~d 346 (539)
T PF04184_consen 344 VGD 346 (539)
T ss_pred hcc
Confidence 443
No 286
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.12 E-value=0.28 Score=39.22 Aligned_cols=53 Identities=15% Similarity=0.126 Sum_probs=26.7
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040371 48 IYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFD 100 (410)
Q Consensus 48 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 100 (410)
+..+.+.+.+....++++.+.+.+...+....+.|+.+|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33344444455555555555554444455556666666666655455554444
No 287
>PRK11906 transcriptional regulator; Provisional
Probab=85.05 E-value=38 Score=32.65 Aligned_cols=82 Identities=16% Similarity=0.100 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHH
Q 040371 123 AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ-LEHYGAMVDLLGRAGHIEEAYGLI 201 (410)
Q Consensus 123 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~ 201 (410)
..+|.++-++..+.+ .-|......+..+....++++.|...|++.. .+.|| ...|........-+|+.++|.+.+
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345555555555533 2255555555555566666777777777765 34454 344444444455677777777777
Q ss_pred Hh-CCCCC
Q 040371 202 TS-MTMEP 208 (410)
Q Consensus 202 ~~-m~~~p 208 (410)
++ +...|
T Consensus 396 ~~alrLsP 403 (458)
T PRK11906 396 DKSLQLEP 403 (458)
T ss_pred HHHhccCc
Confidence 66 34444
No 288
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=84.77 E-value=12 Score=33.42 Aligned_cols=114 Identities=10% Similarity=0.084 Sum_probs=0.0
Q ss_pred HcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHc--cCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHH
Q 040371 119 IHGLAADASAIFTKMEM-FNVLPDSITFLGLLTACSH--CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIE 195 (410)
Q Consensus 119 ~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 195 (410)
++....+|+.+|+.... +.+--|..+...+++.... ......--++.+.+...++-.++..+....+..+++.+++.
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Q ss_pred HHHHHHHhC----CCCCCHHHHHHHHHHHHhcCchhHHHHH
Q 040371 196 EAYGLITSM----TMEPDVVVWRALLSACRTFKRLELGEVA 232 (410)
Q Consensus 196 ~A~~~~~~m----~~~p~~~~~~~li~~~~~~g~~~~a~~~ 232 (410)
+-.++++.. ....|...|..+|..-..+|+.....++
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.52 E-value=20 Score=29.10 Aligned_cols=19 Identities=11% Similarity=0.060 Sum_probs=10.2
Q ss_pred HHhcCCHHHHHHHHHhccc
Q 040371 86 YSKCGKIQMAKEVFDTVQR 104 (410)
Q Consensus 86 y~~~g~~~~A~~~f~~m~~ 104 (410)
+.+.|++++|+.+|+++..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 4455555555555555543
No 290
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.45 E-value=0.44 Score=38.00 Aligned_cols=86 Identities=9% Similarity=0.117 Sum_probs=60.2
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 040371 11 SMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCG 90 (410)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 90 (410)
.+|..+.+.+.++.....++.+...+...+....+.++..|++.+..+....+++ .. +.+-...++..+-+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~~----~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK---TS----NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---SS----SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc---cc----cccCHHHHHHHHHhcc
Confidence 4577788889999999999999877666678888999999999987777776665 11 1122345566666677
Q ss_pred CHHHHHHHHHhcc
Q 040371 91 KIQMAKEVFDTVQ 103 (410)
Q Consensus 91 ~~~~A~~~f~~m~ 103 (410)
.+++|.-++.++.
T Consensus 85 l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 85 LYEEAVYLYSKLG 97 (143)
T ss_dssp SHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHcc
Confidence 7777766666554
No 291
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.95 E-value=2.7 Score=24.83 Aligned_cols=26 Identities=12% Similarity=0.164 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHH
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKME 134 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~ 134 (410)
+++.|...|...|++++|+.++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555556666666666666665543
No 292
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.82 E-value=3.1 Score=23.23 Aligned_cols=27 Identities=19% Similarity=0.584 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 040371 8 SWNSMIGGFVRNARFDEALRFFREMLS 34 (410)
Q Consensus 8 ~~n~li~~~~~~g~~~~a~~l~~~m~~ 34 (410)
.|..+-..|.+.|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 567777888888888888888888765
No 293
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=82.50 E-value=38 Score=30.69 Aligned_cols=46 Identities=11% Similarity=0.100 Sum_probs=21.0
Q ss_pred CChhHHHHHHHHHHHc--CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040371 4 KDVVSWNSMIGGFVRN--ARFDEALRFFREMLSSKVEPDKFTFASVIYGC 51 (410)
Q Consensus 4 ~~~~~~n~li~~~~~~--g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~ 51 (410)
|.++.+|-+|+-|.-. +--++...++.-+ .|..++...=.+++.+.
T Consensus 109 ~~~qvf~KliRRykyLeK~fE~e~~k~Llfl--k~F~e~Er~KLA~~Tal 156 (412)
T KOG2297|consen 109 NSVQVFQKLIRRYKYLEKNFENEMRKFLLFL--KLFEENERKKLAMLTAL 156 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccCHHHHHHHHHHHHH
Confidence 3456677777665421 2112222222222 24556655555555444
No 294
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=82.41 E-value=26 Score=28.78 Aligned_cols=133 Identities=12% Similarity=0.105 Sum_probs=75.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHhccc
Q 040371 26 LRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNF-ILSAALIDMYSKCGKIQMAKEVFDTVQR 104 (410)
Q Consensus 26 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~f~~m~~ 104 (410)
++..+.+.+.+++|+...+..+++.+.+.|.+..-.+ +++.++-+|. .+...|++.-. ....+.++=-.|..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~---~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGN---QYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHc---cChHHHHHHHHHHH
Confidence 4455566667888888888888998888888765444 3344444443 33333333222 22333333333433
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 040371 105 NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169 (410)
Q Consensus 105 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 169 (410)
+=-..+..++..+...|++-+|+.+.+..... +...-..++.+-.+.++...=..+|....
T Consensus 87 RL~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 87 RLGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32335666777788888888888888765322 11222345666666666554444444433
No 295
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=82.15 E-value=32 Score=29.60 Aligned_cols=180 Identities=15% Similarity=0.035 Sum_probs=94.7
Q ss_pred hcCCHHHHHHHHHhcc--cCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 040371 88 KCGKIQMAKEVFDTVQ--RND-VSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKY 164 (410)
Q Consensus 88 ~~g~~~~A~~~f~~m~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 164 (410)
..|-++-|+-=|.+.. .|+ ...||-+---+...|+++.|.+.|+...+.... ...++..-.-++.-.|++..|.+=
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHH
Confidence 3444555555554433 333 356777777777888888888888887764322 122222222233345777777665
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCchhHH-HHHHHhhccCC--
Q 040371 165 FDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG-LITSMTMEPDVVVWRALLSACRTFKRLELG-EVAIVNISRLM-- 240 (410)
Q Consensus 165 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~~~~~~-- 240 (410)
|...-..-.-.|-...|--++ -+.-++.+|.. +.++. ...|..-|...|-.+---.-.+++ .+-+.....++
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~-~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~ 231 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRA-EKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTS 231 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHH-HhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHH
Confidence 554432212222223333222 22334555543 33333 234555666555443222111111 11111111111
Q ss_pred -----CchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 040371 241 -----GGDYVLLSNMYCYLKRWDTAENVREIMKKKGV 272 (410)
Q Consensus 241 -----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 272 (410)
..+|.-|..-|...|..++|..+|+.....++
T Consensus 232 ~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 232 LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 35788899999999999999999998776654
No 296
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=81.35 E-value=44 Score=31.10 Aligned_cols=124 Identities=12% Similarity=0.040 Sum_probs=59.7
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHcC-----CCccHHHHHHHHHHHHhcCCHHHHHHHHHhcc-------cCChh----
Q 040371 45 ASVIYGCARLGALNHAYWVHNLIIEKK-----IELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-------RNDVS---- 108 (410)
Q Consensus 45 ~~ll~a~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-------~~~~~---- 108 (410)
.++-.|+...+.++++.+.|+...+.. -.....++-+|-+.|.+..++++|.-+..+.. -.|..
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 334455555666666666666554431 11234566666666666666666654333221 11221
Q ss_pred --hHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHh
Q 040371 109 --VWNAMISGVAIHGLAADASAIFTKMEM----FNVLPD-SITFLGLLTACSHCGLVEEGRKYFDHM 168 (410)
Q Consensus 109 --~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m 168 (410)
+..-|.-++-..|....|.+.-++..+ .|-.|. ......+...|...|+.+.|+.-+++.
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 112233445555555555555544322 232221 122334455566666666666555543
No 297
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=80.77 E-value=3.3 Score=38.70 Aligned_cols=128 Identities=12% Similarity=0.046 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHc----CC-CccHHHHHHHHHHHHhcCCHHHHHHHHHhcc-------cCCh--
Q 040371 42 FTFASVIYGCARLGALNHAYWVHNLIIEK----KI-ELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-------RNDV-- 107 (410)
Q Consensus 42 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-------~~~~-- 107 (410)
..|..+-+.|.-+|+++.|...|+.-+.. |- ......+..|.++|+-.|+++.|.+.|.... ++.+
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45666777777788999999988765432 21 1234567889999999999999998886532 3433
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 040371 108 SVWNAMISGVAIHGLAADASAIFTKMEMF-----NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169 (410)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 169 (410)
.+..++.+.|.-...+++|+..+.+-+.- ...-....+-+|..++...|..++|+.+...-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 35566788888888899999888764331 112234678889999999999999988776544
No 298
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.45 E-value=15 Score=27.30 Aligned_cols=46 Identities=15% Similarity=0.258 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 040371 24 EALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIE 69 (410)
Q Consensus 24 ~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 69 (410)
+...-++.+....+.|++....+.|.||-+.+++..|.++++-+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444555556677777777777777777777777777776653
No 299
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=80.33 E-value=57 Score=31.35 Aligned_cols=248 Identities=13% Similarity=0.070 Sum_probs=132.2
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCCHHH------HHHHHHHHHhhCCHHHHHHHHHHHHHc-CCCccHHHHHHHHHHHHh
Q 040371 16 FVRNARFDEALRFFREMLSSKVEPDKFT------FASVIYGCARLGALNHAYWVHNLIIEK-KIELNFILSAALIDMYSK 88 (410)
Q Consensus 16 ~~~~g~~~~a~~l~~~m~~~g~~pd~~t------~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~ 88 (410)
+.+++++.+|..+|.+..++ ...+++. -+.+++|+. ..+++..........+. |-.+-...+-+|+ .-+
T Consensus 16 Lqkq~~~~esEkifskI~~e-~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~s~~l~LF~~L~--~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDE-KESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGKSAYLPLFKALV--AYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHH-hhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCCchHHHHHHHHH--HHH
Confidence 34678899999999998764 2333222 344666664 45666666666666554 3333333444433 357
Q ss_pred cCCHHHHHHHHHhcccC------------------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC----CCHHHHH
Q 040371 89 CGKIQMAKEVFDTVQRN------------------DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVL----PDSITFL 146 (410)
Q Consensus 89 ~g~~~~A~~~f~~m~~~------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----p~~~t~~ 146 (410)
.+.+++|.+.|..-.+. |..-=+..+..+...|.+.++..++++|...=.+ -+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78888888877654321 1122245566777889999999998888765333 5778888
Q ss_pred HHHHHHHccCCHH---------------HHHHHHHHhhhhc-----CCCCChhHHHHHHHHHHhc-----CCHHHHHHHH
Q 040371 147 GLLTACSHCGLVE---------------EGRKYFDHMRSRY-----SIQPQLEHYGAMVDLLGRA-----GHIEEAYGLI 201 (410)
Q Consensus 147 ~ll~a~~~~g~~~---------------~a~~~~~~m~~~~-----~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~ 201 (410)
.++-.++++=.++ .+.-+..+|...- .+.|.......++....-. --+-.+.+.+
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 7665555431111 1111111111000 1112222222222211110 1112233333
Q ss_pred HhCCCCCCHH-HHHHHHHHHHhcCchhHHHHH--------HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040371 202 TSMTMEPDVV-VWRALLSACRTFKRLELGEVA--------IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKK 269 (410)
Q Consensus 202 ~~m~~~p~~~-~~~~li~~~~~~g~~~~a~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 269 (410)
++--+.|+.. ....|+..+.. +.+.+..+ +.++...-..++..++....+.++...|.+.+..+.-
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3333456533 34455555444 44444444 2222223345677888888889999999888877764
No 300
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=80.21 E-value=41 Score=29.63 Aligned_cols=61 Identities=15% Similarity=0.250 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHc
Q 040371 9 WNSMIGGFVRNARFDEALRFFREMLSSK-V-EPDKFTFASVIYGCARLGALNHAYWVHNLIIEK 70 (410)
Q Consensus 9 ~n~li~~~~~~g~~~~a~~l~~~m~~~g-~-~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 70 (410)
|+.-+. -.+.|++++|.+-|+.+.... . +-..-+...++.++-+.++++.|....++.++.
T Consensus 38 Y~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 38 YNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 443333 346788888888888877542 1 112345555666677777888888777777665
No 301
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.97 E-value=20 Score=30.39 Aligned_cols=74 Identities=15% Similarity=0.022 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc--CCCCChhHHHHHHHHHHhcCCHHHHH
Q 040371 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY--SIQPQLEHYGAMVDLLGRAGHIEEAY 198 (410)
Q Consensus 124 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~ 198 (410)
++|.+.|-++...+.--+......|... .-..+.+++.+++....+-+ +-.+|+..+.+|+..|-+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAty-Y~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATY-YTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHH-HHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4566666666555544333333333333 33456666666666655322 12455666666666666666666654
No 302
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.88 E-value=3.4 Score=21.85 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=11.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 040371 80 AALIDMYSKCGKIQMAKEVFD 100 (410)
Q Consensus 80 ~~li~~y~~~g~~~~A~~~f~ 100 (410)
..|...+...|++++|+.+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555555666666655554
No 303
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=79.81 E-value=4.5 Score=22.53 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 040371 110 WNAMISGVAIHGLAADASAIFTKMEM 135 (410)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~l~~~m~~ 135 (410)
|..+...|.+.|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444445555555555555554443
No 304
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=79.61 E-value=57 Score=30.93 Aligned_cols=159 Identities=14% Similarity=-0.065 Sum_probs=99.5
Q ss_pred HHHHHHHHH-HHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCChh-----------
Q 040371 41 KFTFASVIY-GCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVS----------- 108 (410)
Q Consensus 41 ~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~----------- 108 (410)
-++|-.+-. ++...++.+.|.++--.+++.. ..+....-.--.++--.++.++|...|++-..-|..
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~ 246 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMP 246 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhH
Confidence 344444433 3467788888888877777754 112221111122334467889999999887643322
Q ss_pred ----hHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHH
Q 040371 109 ----VWNAMISGVAIHGLAADASAIFTKMEMF---NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181 (410)
Q Consensus 109 ----~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 181 (410)
.|..=-+-..++|++.+|.+.|.+.+.. .++|+...|.....+..+.|+.++|..--+...+ +.| ....
T Consensus 247 k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~-syik 322 (486)
T KOG0550|consen 247 KKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDS-SYIK 322 (486)
T ss_pred HHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCH-HHHH
Confidence 2333344567789999999999988763 4566667787777888899999999887666552 222 1222
Q ss_pred HHHH--HHHHhcCCHHHHHHHHHhC
Q 040371 182 GAMV--DLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 182 ~~li--~~~~~~g~~~~A~~~~~~m 204 (410)
.-+. .++.-.+++++|.+-+++.
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 3344567888888877765
No 305
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=78.38 E-value=33 Score=27.43 Aligned_cols=77 Identities=6% Similarity=0.117 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcc---------cCChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040371 79 SAALIDMYSKCGKIQMAKEVFDTVQ---------RNDVSVWNAMISGVAIHGL-AADASAIFTKMEMFNVLPDSITFLGL 148 (410)
Q Consensus 79 ~~~li~~y~~~g~~~~A~~~f~~m~---------~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~l 148 (410)
.|.++.-.+.-++......+++.+. ..+-.+|++++.+.++..- ---+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555555555555555442 1234456666666654443 33455666666666666666666666
Q ss_pred HHHHHcc
Q 040371 149 LTACSHC 155 (410)
Q Consensus 149 l~a~~~~ 155 (410)
+.+|.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6665543
No 306
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=77.07 E-value=35 Score=27.13 Aligned_cols=54 Identities=11% Similarity=0.184 Sum_probs=29.4
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcC
Q 040371 17 VRNARFDEALRFFREMLSSKVEP---DKFTFASVIYGCARLGALNHAYWVHNLIIEKK 71 (410)
Q Consensus 17 ~~~g~~~~a~~l~~~m~~~g~~p---d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 71 (410)
.+.|++++|.+.|+.+... .+. ..-.-..++.++.+.++++.|...+++.++..
T Consensus 21 l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3566666666666666543 111 12234445555566666666666666665553
No 307
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=76.28 E-value=30 Score=25.95 Aligned_cols=87 Identities=15% Similarity=0.160 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 040371 55 GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKME 134 (410)
Q Consensus 55 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 134 (410)
...++|..|.+.+...+- ....+--.-+..+...|+++.|...=.....||...|-++-. .+.|..+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 356788888888887763 344444455666778899999955555566788888887765 46788888888888776
Q ss_pred HCCCCCCHHHH
Q 040371 135 MFNVLPDSITF 145 (410)
Q Consensus 135 ~~g~~p~~~t~ 145 (410)
..| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 665 3444444
No 308
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.13 E-value=34 Score=33.99 Aligned_cols=147 Identities=13% Similarity=0.064 Sum_probs=98.2
Q ss_pred hcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 040371 88 KCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH 167 (410)
Q Consensus 88 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 167 (410)
-.|+++.|..++..++++ .-+.++.-+-+.|..++|+++- ..||. -| ....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rF----elal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS-------TDPDQ-RF----ELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC-------CChhh-hh----hhhhhcCcHHHHHHHHHh
Confidence 457788887777766633 3445556666778888877642 23332 23 233567999999988766
Q ss_pred hhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHH---HHhhccCCCchH
Q 040371 168 MRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDY 244 (410)
Q Consensus 168 m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~ 244 (410)
.. +..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+-+.-..+ ..+... .
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~-----~ 724 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK-----N 724 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcc-----c
Confidence 54 46679999999999999999999888752 255666677777776644444 222222 2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 040371 245 VLLSNMYCYLKRWDTAENVREIM 267 (410)
Q Consensus 245 ~~l~~~~~~~g~~~~a~~~~~~m 267 (410)
+....+|...|+++++.+++.+-
T Consensus 725 N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 725 NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred chHHHHHHHcCCHHHHHHHHHhc
Confidence 33445677899999998887543
No 309
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=75.39 E-value=50 Score=29.67 Aligned_cols=134 Identities=13% Similarity=0.119 Sum_probs=85.9
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHHhhCCHHHHHHHHH----HHHHcCCCccHHHHH
Q 040371 12 MIGGFVRNARFDEALRFFREMLSSKVEPDKFT-------FASVIYGCARLGALNHAYWVHN----LIIEKKIELNFILSA 80 (410)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t-------~~~ll~a~~~~~~~~~a~~~~~----~~~~~g~~~~~~~~~ 80 (410)
+.+...+.+++++|+.++.+.+..|+..|.-+ ...+...|...|+...-.++.. .|..-.-+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 45566788999999999999999988777654 4456777777777654433322 222222233456677
Q ss_pred HHHHHHHhcC-CHHHHHHHHHhccc---C--C----hhhHHHHHHHHHHcCChHHHHHHHH----HHHHCCCCCCHHHH
Q 040371 81 ALIDMYSKCG-KIQMAKEVFDTVQR---N--D----VSVWNAMISGVAIHGLAADASAIFT----KMEMFNVLPDSITF 145 (410)
Q Consensus 81 ~li~~y~~~g-~~~~A~~~f~~m~~---~--~----~~~~~~li~~~~~~g~~~~A~~l~~----~m~~~g~~p~~~t~ 145 (410)
+|++.+.... .+++-.++.+...+ + - ...=.-+|..+.+.|++.+|+.+.. ++++..-+|+.++.
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 8888776543 46666666655432 1 1 1122447888999999999998665 44444556665543
No 310
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.39 E-value=8.9 Score=21.35 Aligned_cols=27 Identities=19% Similarity=0.429 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 040371 8 SWNSMIGGFVRNARFDEALRFFREMLS 34 (410)
Q Consensus 8 ~~n~li~~~~~~g~~~~a~~l~~~m~~ 34 (410)
+|..+-..|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 577777888888888888888887665
No 311
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=75.28 E-value=40 Score=33.14 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc--CChhh---HHHHHHHHHHcCChHHHHHHHHHHHHC
Q 040371 81 ALIDMYSKCGKIQMAKEVFDTVQR--NDVSV---WNAMISGVAIHGLAADASAIFTKMEMF 136 (410)
Q Consensus 81 ~li~~y~~~g~~~~A~~~f~~m~~--~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~ 136 (410)
.|+.-|.+.+++++|..++..|.= -.... .+.+.+.+.+..--.+....++.+...
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 566678888888888888887751 12222 333344444444344444445544443
No 312
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.24 E-value=14 Score=33.45 Aligned_cols=91 Identities=14% Similarity=0.091 Sum_probs=60.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHC---CCCCC--HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 040371 9 WNSMIGGFVRNARFDEALRFFREMLSS---KVEPD--KFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALI 83 (410)
Q Consensus 9 ~n~li~~~~~~g~~~~a~~l~~~m~~~---g~~pd--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 83 (410)
-..++..-.+..+++.+...+-+++.. -..|+ ..++.-++.- -+.+.++.+...=++.|+-||-++++.||
T Consensus 67 Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF~dqf~~c~l~ 142 (418)
T KOG4570|consen 67 VDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFPDQFTFCLLM 142 (418)
T ss_pred hhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhccccchhhHHHHH
Confidence 344444445566777888777777542 12222 2333333322 25667777777778888889999999999
Q ss_pred HHHHhcCCHHHHHHHHHhcc
Q 040371 84 DMYSKCGKIQMAKEVFDTVQ 103 (410)
Q Consensus 84 ~~y~~~g~~~~A~~~f~~m~ 103 (410)
+.+.+.+++.+|.++.-.|.
T Consensus 143 D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 143 DSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred HHHHhcccHHHHHHHHHHHH
Confidence 99999999888877766554
No 313
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=75.16 E-value=27 Score=26.31 Aligned_cols=27 Identities=15% Similarity=0.221 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKMEM 135 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 135 (410)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 578888888888888899988888876
No 314
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.86 E-value=62 Score=28.84 Aligned_cols=82 Identities=17% Similarity=0.177 Sum_probs=36.7
Q ss_pred cCCHhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHH---cCCCc--cHHHHHHHHHHHHhcC
Q 040371 19 NARFDEALRFFREMLS---SKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIE---KKIEL--NFILSAALIDMYSKCG 90 (410)
Q Consensus 19 ~g~~~~a~~l~~~m~~---~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~---~g~~~--~~~~~~~li~~y~~~g 90 (410)
...+++|+.-|++.++ ..-.-.--.+..++....+++++++..+.+.+++. +.+.. +....|++++.-+-+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3355555555555433 11122333455555555555555555555444431 11111 2334455555544444
Q ss_pred CHHHHHHHHH
Q 040371 91 KIQMAKEVFD 100 (410)
Q Consensus 91 ~~~~A~~~f~ 100 (410)
+.+--..+++
T Consensus 120 ~m~LLQ~FYe 129 (440)
T KOG1464|consen 120 NMDLLQEFYE 129 (440)
T ss_pred hhHHHHHHHH
Confidence 4444444443
No 315
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=74.28 E-value=20 Score=22.99 Aligned_cols=49 Identities=10% Similarity=0.208 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHCCc
Q 040371 245 VLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGF 319 (410)
Q Consensus 245 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 319 (410)
..+.-++.+.|++++|.+..+.+.+. .|...++..+-..+.++|.+.|+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 45667889999999999999888763 33455666777767778888774
No 316
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.51 E-value=20 Score=28.77 Aligned_cols=49 Identities=4% Similarity=-0.100 Sum_probs=27.7
Q ss_pred cCchhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 040371 223 FKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKG 271 (410)
Q Consensus 223 ~g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 271 (410)
.++.++++.+ +.-+.|..+..-..-...+...|+|.+|.++|++..+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 4455555554 333445555444444555666677777777776666554
No 317
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=72.01 E-value=59 Score=29.11 Aligned_cols=86 Identities=15% Similarity=0.091 Sum_probs=51.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh-
Q 040371 114 ISGVAIHGLAADASAIFTKMEMF--NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGR- 190 (410)
Q Consensus 114 i~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~- 190 (410)
|.+++..+++.+++...-+--+. .++|.. .-.-|-.|++.+....+.++-...... .-.-+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 56677777777777654433222 233333 333344567788877777777666643 222234457777777665
Q ss_pred ----cCCHHHHHHHHH
Q 040371 191 ----AGHIEEAYGLIT 202 (410)
Q Consensus 191 ----~g~~~~A~~~~~ 202 (410)
.|.+++|+++..
T Consensus 167 VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVV 182 (309)
T ss_pred HHhccccHHHHHHHHh
Confidence 578888887774
No 318
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.97 E-value=30 Score=31.10 Aligned_cols=60 Identities=15% Similarity=0.118 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040371 43 TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103 (410)
Q Consensus 43 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 103 (410)
+++.+.+.|...|.+.+|.+++++.+... +.+...+-.|+..++..|+--.|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 45555667777777777777777777664 5566777777777777777666666555543
No 319
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.85 E-value=18 Score=32.53 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHH
Q 040371 78 LSAALIDMYSKCGKIQMAKEVFDTVQRN---DVSVWNAMISGVAIHGLAADASAIFTKMEM-----FNVLPDSI 143 (410)
Q Consensus 78 ~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~ 143 (410)
+.+.....|.++|.+.+|.++-++...- +...|-.++..++..|+--.|..-+++|.+ .|+..|..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdds 354 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDS 354 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchh
Confidence 4556678899999999999999987753 567899999999999998888888888754 25555443
No 320
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=70.62 E-value=12 Score=20.73 Aligned_cols=27 Identities=15% Similarity=-0.012 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKMEM 135 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 135 (410)
+|..+...|.+.|+.++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555556666666666555443
No 321
>PHA02875 ankyrin repeat protein; Provisional
Probab=69.38 E-value=1.1e+02 Score=29.27 Aligned_cols=200 Identities=14% Similarity=0.046 Sum_probs=105.4
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHH--HHHHHHHHHHhc
Q 040371 14 GGFVRNARFDEALRFFREMLSSKVEPDKFT--FASVIYGCARLGALNHAYWVHNLIIEKKIELNFI--LSAALIDMYSKC 89 (410)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~ 89 (410)
...++.|+.+-+.. +.+.|..|+... ..+.+..++..|+.+-+ +.+.+.|..|+.. ...+.+...++.
T Consensus 7 ~~A~~~g~~~iv~~----Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 7 CDAILFGELDIARR----LLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHHhCCHHHHHH----HHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHC
Confidence 33445677655444 445677666432 33455566677887644 4555666555432 123445666788
Q ss_pred CCHHHHHHHHHhcccC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCCHHHHHH
Q 040371 90 GKIQMAKEVFDTVQRN----DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSIT--FLGLLTACSHCGLVEEGRK 163 (410)
Q Consensus 90 g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a~~~~g~~~~a~~ 163 (410)
|+.+.+..+++.-... +..-++.+ ...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+..
T Consensus 79 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL-~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 79 GDVKAVEELLDLGKFADDVFYKDGMTPL-HLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred CCHHHHHHHHHcCCcccccccCCCCCHH-HHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 9999988888754322 11122333 333455665 45555566676665422 1234445556788777666
Q ss_pred HHHHhhhhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCchhHHHHHH
Q 040371 164 YFDHMRSRYSIQPQ---LEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVV---VWRALLSACRTFKRLELGEVAI 233 (410)
Q Consensus 164 ~~~~m~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~---~~~~li~~~~~~g~~~~a~~~~ 233 (410)
+++. |..++ ..-++.|. ..+..|+.+-+.-+++. +..|+.. ...+++...+..|+.+.+.-++
T Consensus 154 Ll~~-----g~~~~~~d~~g~TpL~-~A~~~g~~eiv~~Ll~~-ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll 222 (413)
T PHA02875 154 LIDH-----KACLDIEDCCGCTPLI-IAMAKGDIAICKMLLDS-GANIDYFGKNGCVAALCYAIENNKIDIVRLFI 222 (413)
T ss_pred HHhc-----CCCCCCCCCCCCCHHH-HHHHcCCHHHHHHHHhC-CCCCCcCCCCCCchHHHHHHHcCCHHHHHHHH
Confidence 6543 33222 22233333 34556777665555543 3333322 1234555455677777666553
No 322
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=69.05 E-value=7 Score=21.47 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040371 244 YVLLSNMYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 244 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 270 (410)
+..+..+|.+.|++++|.+.|+++.+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 455778888999999999999988764
No 323
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=68.89 E-value=17 Score=33.38 Aligned_cols=54 Identities=11% Similarity=0.229 Sum_probs=40.2
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 040371 14 GGFVRNARFDEALRFFREMLSSKVEP-DKFTFASVIYGCARLGALNHAYWVHNLIIE 69 (410)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 69 (410)
.-|.++|.+++|++.|.+-.. +.| |.+++..-..||.+...+..|..=....+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 457788999999999877654 455 888888888888888888776655444443
No 324
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=68.35 E-value=6.1 Score=30.86 Aligned_cols=33 Identities=33% Similarity=0.360 Sum_probs=25.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040371 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC 152 (410)
Q Consensus 118 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 152 (410)
-..|.-.+|..+|++|++.|-+||. ++.|+.++
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3356677899999999999999985 66677654
No 325
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.02 E-value=1.2e+02 Score=30.33 Aligned_cols=100 Identities=17% Similarity=0.124 Sum_probs=48.4
Q ss_pred HhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 040371 87 SKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD 166 (410)
Q Consensus 87 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 166 (410)
.+.|+++.|.++..+.. +..-|..|-.+..+.|++..|.+-|.+... |.+|+-.+...|+-+....+-.
T Consensus 648 l~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred hhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 44556666555544332 344566666666666666666666554332 3345555555555443333333
Q ss_pred HhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 167 HMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 167 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
...+. |. .|.---+|...|+++++.+++.+-
T Consensus 717 ~~~~~-g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 717 LAKKQ-GK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHhh-cc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 22221 21 222223345556666666555544
No 326
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.92 E-value=14 Score=22.69 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=11.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 040371 114 ISGVAIHGLAADASAIFTKMEM 135 (410)
Q Consensus 114 i~~~~~~g~~~~A~~l~~~m~~ 135 (410)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3445555555555555555443
No 327
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=67.87 E-value=5.5 Score=31.09 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=24.2
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040371 18 RNARFDEALRFFREMLSSKVEPDKFTFASVIYGC 51 (410)
Q Consensus 18 ~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~ 51 (410)
..|.-.+|-.+|++|+..|-+|| .|+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34566778899999999998887 466777654
No 328
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=67.78 E-value=1.2e+02 Score=29.27 Aligned_cols=199 Identities=14% Similarity=0.062 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHH-------HHHHHHHHhc----CCHHHHHHHHHhcccCChh-
Q 040371 41 KFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILS-------AALIDMYSKC----GKIQMAKEVFDTVQRNDVS- 108 (410)
Q Consensus 41 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-------~~li~~y~~~----g~~~~A~~~f~~m~~~~~~- 108 (410)
..+|..+++.+.+.++...|.+.+..+.-. +|+..+. .+|.++.+.- -++.+=..+++.....|+.
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence 357888888888888888888877766553 3433322 2333333311 1122334455555544432
Q ss_pred ----hHHHH-HHHHHHcCC-hHHHHHHHHHHHHCCCCCCH-H----HHHHHHHHHHc---cCCHHHHHHHHHHhhhhcCC
Q 040371 109 ----VWNAM-ISGVAIHGL-AADASAIFTKMEMFNVLPDS-I----TFLGLLTACSH---CGLVEEGRKYFDHMRSRYSI 174 (410)
Q Consensus 109 ----~~~~l-i~~~~~~g~-~~~A~~l~~~m~~~g~~p~~-~----t~~~ll~a~~~---~g~~~~a~~~~~~m~~~~~~ 174 (410)
.|-.- ..-+-+.|. -++|+++++..++ +.|.. . ++..+=.+|.+ ...+..-..+-+-+.+ .|+
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e-~gl 452 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITE-VGL 452 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-cCC
Confidence 22111 122334444 6777777777765 33322 1 22222233332 2334444444444443 366
Q ss_pred CCC----hhHHHHHHHH--HHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCchHH
Q 040371 175 QPQ----LEHYGAMVDL--LGRAGHIEEAYGLITSM-TMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYV 245 (410)
Q Consensus 175 ~~~----~~~~~~li~~--~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 245 (410)
+|- ...-|.|-++ +-..|++.++.-.-.=+ .+.|++.++..+--......++++|..++..+.| +..++.
T Consensus 453 ~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~-n~~~~d 529 (549)
T PF07079_consen 453 TPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP-NERMRD 529 (549)
T ss_pred CcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC-chhhHH
Confidence 653 2344555554 34567777764321111 4567777777666666677777777777666655 334433
No 329
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.73 E-value=17 Score=22.25 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=9.9
Q ss_pred HHHHHhhCCHHHHHHHHHHHHH
Q 040371 48 IYGCARLGALNHAYWVHNLIIE 69 (410)
Q Consensus 48 l~a~~~~~~~~~a~~~~~~~~~ 69 (410)
..+|...|+.+.|+++++.++.
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3344444444444444444443
No 330
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=66.45 E-value=23 Score=29.81 Aligned_cols=51 Identities=18% Similarity=0.079 Sum_probs=27.0
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 154 HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
...+.+......+.+.+.....|+..+|..++..+...|+.++|.++..++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333344566666666666666666666666665555
No 331
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.25 E-value=55 Score=28.25 Aligned_cols=59 Identities=15% Similarity=-0.012 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMR 169 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 169 (410)
|.+.-|+.+.+.+...+|+.+.++-.+. +| |.-+-..++..++-.|++++|..-++-.-
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 3455566777777778887777766554 33 44455566777777788887777666544
No 332
>PRK09687 putative lyase; Provisional
Probab=65.88 E-value=1e+02 Score=27.78 Aligned_cols=215 Identities=13% Similarity=-0.005 Sum_probs=135.7
Q ss_pred CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCH----HHHHHHHHHHHHcCCCccHHH
Q 040371 3 DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGAL----NHAYWVHNLIIEKKIELNFIL 78 (410)
Q Consensus 3 ~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~----~~a~~~~~~~~~~g~~~~~~~ 78 (410)
.+|....-..+.++...|. .++...+..+... +|...=...+.+++..|+. +.+...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 4666677777888887775 4455555566543 3666666777788888863 4566666655333 567777
Q ss_pred HHHHHHHHHhcCCH-----HHHHHHHHh-cccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040371 79 SAALIDMYSKCGKI-----QMAKEVFDT-VQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC 152 (410)
Q Consensus 79 ~~~li~~y~~~g~~-----~~A~~~f~~-m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 152 (410)
-.+.+.+++..+.- ..+...+.. +..++..+--..+.++.+.|+ .+|+..+-.+.. .+|...-...+.++
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aL 183 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFAL 183 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 77777777766431 233444433 335566666677777777776 567777777775 34555555566666
Q ss_pred HccC-CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHH
Q 040371 153 SHCG-LVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEV 231 (410)
Q Consensus 153 ~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~ 231 (410)
.+.+ .-..+...+..+.. .++..+-...+.++++.|...-.-.+++.+. .++ .....+.++...|+. .|..
T Consensus 184 g~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p 255 (280)
T PRK09687 184 NSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKDKRVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLP 255 (280)
T ss_pred hcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCChhHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHH
Confidence 6653 23456666666653 3477788888999999988544444555553 233 345678888888886 4555
Q ss_pred HHHh
Q 040371 232 AIVN 235 (410)
Q Consensus 232 ~~~~ 235 (410)
.+.+
T Consensus 256 ~L~~ 259 (280)
T PRK09687 256 VLDT 259 (280)
T ss_pred HHHH
Confidence 5444
No 333
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=65.51 E-value=73 Score=25.93 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=23.7
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 154 HCGLVEEGRKYFDHMRSRYSIQPQL-EHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
+.++.+++..+++.+. -+.|.. ..-..-...+.+.|++.+|.++|+++
T Consensus 22 ~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 22 RLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred ccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4455666666665554 223332 11122223355566666666666665
No 334
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=64.71 E-value=81 Score=26.85 Aligned_cols=85 Identities=14% Similarity=-0.040 Sum_probs=45.9
Q ss_pred HhhCCHHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHH---HHHHHHcCChH
Q 040371 52 ARLGALNHAYWVHNLIIEKKIELN----FILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAM---ISGVAIHGLAA 124 (410)
Q Consensus 52 ~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~ 124 (410)
...|++++|..-|...+..-.... ...|..-.-++.|.+.++.|+.--.+..+-+..---++ ..+|-+..+++
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~e 185 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYE 185 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHH
Confidence 445666666666666655432211 22333344456666666666655554443332211122 33566677788
Q ss_pred HHHHHHHHHHHC
Q 040371 125 DASAIFTKMEMF 136 (410)
Q Consensus 125 ~A~~l~~~m~~~ 136 (410)
+|++=|+++++.
T Consensus 186 ealeDyKki~E~ 197 (271)
T KOG4234|consen 186 EALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHh
Confidence 888888877764
No 335
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=64.71 E-value=3e+02 Score=32.67 Aligned_cols=63 Identities=11% Similarity=-0.029 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhcCchhHHHHH-HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 040371 210 VVVWRALLSACRTFKRLELGEVA-IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGV 272 (410)
Q Consensus 210 ~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 272 (410)
..+|-....-++..|+++.|... +...+..-+..+.-.....-..|+...|..++++..+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 46788888899999999999999 4444555667888889999999999999999998876544
No 336
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=64.51 E-value=99 Score=27.09 Aligned_cols=89 Identities=9% Similarity=0.091 Sum_probs=47.6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCC-----------CCChhHHHHHH
Q 040371 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSI-----------QPQLEHYGAMV 185 (410)
Q Consensus 117 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-----------~~~~~~~~~li 185 (410)
|.+..+..--..+.+-.+.+++.-+..-...++ +...|+..+|...++.-...+|. .|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 444444333334444444555555444444433 34578888888888776654443 24444444444
Q ss_pred HHHHhcCCHHHHHHHHHhC---CCCC
Q 040371 186 DLLGRAGHIEEAYGLITSM---TMEP 208 (410)
Q Consensus 186 ~~~~~~g~~~~A~~~~~~m---~~~p 208 (410)
.. +..+++++|.+.+.++ ++.|
T Consensus 247 ~~-~~~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 247 QA-CLKRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred HH-HHhccHHHHHHHHHHHHHcCCCH
Confidence 43 3345677776666655 4544
No 337
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.37 E-value=46 Score=25.85 Aligned_cols=71 Identities=11% Similarity=0.262 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 125 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
|..+-+..+..-.+.|+....-..|.||.+.+++..|.++|+-++.+.| +....|-.+++ +..-+.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHHH---------HHHHHHHHh
Confidence 4455555666667889999999999999999999999999999886533 33335655543 344455555
Q ss_pred CC
Q 040371 205 TM 206 (410)
Q Consensus 205 ~~ 206 (410)
|+
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 43
No 338
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=64.36 E-value=36 Score=32.82 Aligned_cols=108 Identities=17% Similarity=0.147 Sum_probs=63.9
Q ss_pred cCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 040371 120 HGLAADAS-AIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAY 198 (410)
Q Consensus 120 ~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 198 (410)
.|+.-.|- ++|..+......|+.+...+.| ..+.|.++.+.+.+....+ -+..+..+-.+++...-+.|++++|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHH
Confidence 45554443 4555555555566666555544 4677888888887777653 34445667778888888888888888
Q ss_pred HHHHhC---CCCCCHHHHHHHHHHHHhcCchhHHHHH
Q 040371 199 GLITSM---TMEPDVVVWRALLSACRTFKRLELGEVA 232 (410)
Q Consensus 199 ~~~~~m---~~~p~~~~~~~li~~~~~~g~~~~a~~~ 232 (410)
.+-..| .++ +..............|-++++...
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~ 413 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHY 413 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHH
Confidence 777766 222 222222223333445555555554
No 339
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.34 E-value=88 Score=26.45 Aligned_cols=53 Identities=11% Similarity=-0.105 Sum_probs=22.3
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 040371 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS 170 (410)
Q Consensus 116 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 170 (410)
...+.|.+++|+.+++.....+..+ .....--..+...|+-++|+.-|.....
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKGDKQEARAAYEKALE 187 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcCchHHHHHHHHHHHH
Confidence 3444555555555554443322111 1111222344445555555555555443
No 340
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=63.39 E-value=1.1e+02 Score=27.40 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=13.9
Q ss_pred HHcCCHhHHHHHHHHHHH
Q 040371 17 VRNARFDEALRFFREMLS 34 (410)
Q Consensus 17 ~~~g~~~~a~~l~~~m~~ 34 (410)
.+.|+.+.|..++.+...
T Consensus 4 ~~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhhCCHHHHHHHHHHhhh
Confidence 467888888888888765
No 341
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=62.69 E-value=29 Score=29.14 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=33.2
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHc--------------CCCccHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 040371 45 ASVIYGCARLGALNHAYWVHNLIIEK--------------KIELNFILSAALIDMYSKCGKIQMAKEVFDT 101 (410)
Q Consensus 45 ~~ll~a~~~~~~~~~a~~~~~~~~~~--------------g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 101 (410)
.+++..|.+..++.+++.+++.+-+. +..+.-.+.|.....+.++|.+|.|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 34555566666666666666666543 1233445556666666666666666666653
No 342
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=62.61 E-value=1.6e+02 Score=28.84 Aligned_cols=217 Identities=10% Similarity=0.086 Sum_probs=122.0
Q ss_pred CChhHHHHHHHHHHHcC------CHhHHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcc
Q 040371 4 KDVVSWNSMIGGFVRNA------RFDEALRFFREMLSS-KVEPDK-FTFASVIYGCARLGALNHAYWVHNLIIEKKIELN 75 (410)
Q Consensus 4 ~~~~~~n~li~~~~~~g------~~~~a~~l~~~m~~~-g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 75 (410)
|+...|+..|..|...- .....+.+|+..... +..|+. ..|..+.-.+....... ..-..+...++..+
T Consensus 313 ~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r---~~a~~l~~e~f~~s 389 (568)
T KOG2396|consen 313 PTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAR---EVAVKLTTELFRDS 389 (568)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHh---HHHHHhhHHHhcch
Confidence 44556888888776542 455566677766543 345543 35666555555544332 22222333334556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHh----cc----cCChhhHHHHH-HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 040371 76 FILSAALIDMYSKCGKIQMAKEVFDT----VQ----RNDVSVWNAMI-SGVAIHGLAADASAIFTKMEMFNVLPDSITFL 146 (410)
Q Consensus 76 ~~~~~~li~~y~~~g~~~~A~~~f~~----m~----~~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 146 (410)
...|-.-+....+... ++.-+|.+ .. .+-...|++.. ..+.+....+.....+. .-..|+..|+.
T Consensus 390 ~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~----s~~~~~~~tl~ 463 (568)
T KOG2396|consen 390 GKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALL----SVIGADSVTLK 463 (568)
T ss_pred HHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHH----HhcCCceeehh
Confidence 6666555555443322 33333333 22 23445666655 11111111222222222 22466766654
Q ss_pred -HHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH---HhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 040371 147 -GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLL---GRAGHIEEAYGLITSM--TMEPDVVVWRALLSAC 220 (410)
Q Consensus 147 -~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~ 220 (410)
.++.-+-..|-...|..++..+.. --+|+...|.-+|..= ..+| +..+...++.| .+..|+..|.-.+.-=
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e 540 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEE 540 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhh
Confidence 566777778888888888888874 4455677777777642 2333 66777777777 2336777888777777
Q ss_pred HhcCchhHHHHH
Q 040371 221 RTFKRLELGEVA 232 (410)
Q Consensus 221 ~~~g~~~~a~~~ 232 (410)
..+|..+.+-.+
T Consensus 541 ~~~g~~en~~~~ 552 (568)
T KOG2396|consen 541 LPLGRPENCGQI 552 (568)
T ss_pred ccCCCcccccHH
Confidence 788887777666
No 343
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.34 E-value=1.9e+02 Score=30.02 Aligned_cols=51 Identities=20% Similarity=0.128 Sum_probs=24.1
Q ss_pred HHHHhcCCHHHHHHHHHhcccC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 040371 84 DMYSKCGKIQMAKEVFDTVQRN-----DVSVWNAMISGVAIHGLAADASAIFTKME 134 (410)
Q Consensus 84 ~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 134 (410)
+.+.+.+.+++|..+-+..... -...|-..|..+.-.|++++|-.+.-.|.
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 3444455555555544443321 11244555555555555555555555553
No 344
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.22 E-value=1.1e+02 Score=26.80 Aligned_cols=16 Identities=6% Similarity=0.158 Sum_probs=12.2
Q ss_pred HhcCCHHHHHHHHHhC
Q 040371 189 GRAGHIEEAYGLITSM 204 (410)
Q Consensus 189 ~~~g~~~~A~~~~~~m 204 (410)
+..+++.+|.++|++.
T Consensus 165 a~leqY~~Ai~iyeqv 180 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQV 180 (288)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567788888888876
No 345
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=61.81 E-value=78 Score=27.36 Aligned_cols=49 Identities=12% Similarity=-0.031 Sum_probs=21.4
Q ss_pred HHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 040371 49 YGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEV 98 (410)
Q Consensus 49 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 98 (410)
+.+.+.+++.+++.....-++.. +.|...-..|+..|+-.|++++|..-
T Consensus 9 seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Q 57 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQ 57 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHH
Confidence 33334444444444444443332 23334444445555555555555433
No 346
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=61.56 E-value=74 Score=24.67 Aligned_cols=58 Identities=14% Similarity=0.240 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 040371 42 FTFASVIYGCARLGALNHAYWVHNLIIEKKIELN-FILSAALIDMYSKCGKIQMAKEVFDT 101 (410)
Q Consensus 42 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~f~~ 101 (410)
.-|.-+--.++..-+ .+.++|..|...|+... ...|......+.+.|++++|.++|+.
T Consensus 66 ~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 66 ERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 334444444444333 77788888877766544 45667777777778888888877764
No 347
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.35 E-value=95 Score=25.81 Aligned_cols=129 Identities=12% Similarity=0.049 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHH-HHHHHHHhcCCHHHHHHHHHhcccCChh--hH---HHHHH
Q 040371 42 FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSA-ALIDMYSKCGKIQMAKEVFDTVQRNDVS--VW---NAMIS 115 (410)
Q Consensus 42 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~y~~~g~~~~A~~~f~~m~~~~~~--~~---~~li~ 115 (410)
.+|...|+. ++.+..++|..-|..+.+.|...-+..-. -.....+..|+-..|...|+++-.-+.+ .. .-+=.
T Consensus 60 d~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 445444443 45566677777777777776654443322 2233456678888888888876532111 11 11111
Q ss_pred --HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhh
Q 040371 116 --GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR 171 (410)
Q Consensus 116 --~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 171 (410)
.+..+|.+++.....+-+-..+.+--...--.|--+-.+.|++..|.+.|..+..+
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 23456777777777666655443333344455666667888888888888887765
No 348
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.23 E-value=1.1e+02 Score=26.70 Aligned_cols=19 Identities=16% Similarity=0.336 Sum_probs=10.8
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 040371 252 CYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 252 ~~~g~~~~a~~~~~~m~~~ 270 (410)
+..+++.+|.++|++....
T Consensus 165 a~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566666666665543
No 349
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.19 E-value=24 Score=24.81 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=6.5
Q ss_pred HHHHHHHHhcCCHHHH
Q 040371 182 GAMVDLLGRAGHIEEA 197 (410)
Q Consensus 182 ~~li~~~~~~g~~~~A 197 (410)
.+|+.+|+..|++.++
T Consensus 47 G~l~qA~~e~Gkyr~~ 62 (80)
T PF10579_consen 47 GYLIQAHMEWGKYREM 62 (80)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 350
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=60.64 E-value=1.7e+02 Score=28.61 Aligned_cols=240 Identities=9% Similarity=-0.001 Sum_probs=130.3
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCC------HHHHHHHHHHHHHcC-CCc-cHHHHHHHHHHHHhcCCHH
Q 040371 22 FDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA------LNHAYWVHNLIIEKK-IEL-NFILSAALIDMYSKCGKIQ 93 (410)
Q Consensus 22 ~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~------~~~a~~~~~~~~~~g-~~~-~~~~~~~li~~y~~~g~~~ 93 (410)
-+....+|++..+ ..|....|...|..|-..-. +.....+++...+.+ ..+ ....|..+.-++.+...-.
T Consensus 298 ~s~~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r 375 (568)
T KOG2396|consen 298 ESRCCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAR 375 (568)
T ss_pred HHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHh
Confidence 3445578888776 36778888888888765433 344455565554432 333 3556777777777666543
Q ss_pred -HHHHHHHhcccCChhhHHHHHHHHHHcC-Ch-HHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHccCCHHHHHHHHHHhh
Q 040371 94 -MAKEVFDTVQRNDVSVWNAMISGVAIHG-LA-ADASAIFTKMEMFNVLPDSITFLGLL-TACSHCGLVEEGRKYFDHMR 169 (410)
Q Consensus 94 -~A~~~f~~m~~~~~~~~~~li~~~~~~g-~~-~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~ 169 (410)
-|..+-.+.-..+...|-.-+....+.. +. -.-.++|...+..-..+-...+++.. .........+.....+..+.
T Consensus 376 ~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~ 455 (568)
T KOG2396|consen 376 EVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVI 455 (568)
T ss_pred HHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence 3444444555566666666555544321 21 12223344444332233334444433 11111111222222333322
Q ss_pred hhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHH--hcCchhHHHHH---HHhhccCCC
Q 040371 170 SRYSIQPQL-EHYGAMVDLLGRAGHIEEAYGLITSMT-M-EPDVVVWRALLSACR--TFKRLELGEVA---IVNISRLMG 241 (410)
Q Consensus 170 ~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~li~~~~--~~g~~~~a~~~---~~~~~~~~~ 241 (410)
.|+. ..-+.+++-+-+.|-..+|...+.++. . .|....|.-+|.-=. ..-++.-+..+ ...-...++
T Consensus 456 -----~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 456 -----GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADS 530 (568)
T ss_pred -----CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCCh
Confidence 3343 345678889999999999999999983 2 346777877776321 11123333333 222222666
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHH
Q 040371 242 GDYVLLSNMYCYLKRWDTAENVREIMK 268 (410)
Q Consensus 242 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 268 (410)
..|......-...|+.+.+-.++.+..
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHHHH
Confidence 677766666667888888777765543
No 351
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=59.72 E-value=21 Score=18.40 Aligned_cols=27 Identities=19% Similarity=0.512 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 040371 8 SWNSMIGGFVRNARFDEALRFFREMLS 34 (410)
Q Consensus 8 ~~n~li~~~~~~g~~~~a~~l~~~m~~ 34 (410)
.|..+...|...|++++|...|++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 466667777777777777777766654
No 352
>PF13934 ELYS: Nuclear pore complex assembly
Probab=58.56 E-value=1.2e+02 Score=26.27 Aligned_cols=103 Identities=18% Similarity=0.189 Sum_probs=49.1
Q ss_pred HHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 040371 110 WNAMISGVA--IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDL 187 (410)
Q Consensus 110 ~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~ 187 (410)
|-..+.||- .++++++|++++-.- .+.|+-.. -++.++...|+.+.|..+++.+.- .-.+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH
Confidence 444444443 345566666655221 12222111 255555556777777777665442 11122223333333
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 040371 188 LGRAGHIEEAYGLITSMTMEPDVVVWRALLSACR 221 (410)
Q Consensus 188 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~ 221 (410)
..++.+.||..+-+...-.--...|..++..|.
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 555677777766665532111335556665555
No 353
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=58.54 E-value=86 Score=24.42 Aligned_cols=44 Identities=7% Similarity=0.071 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040371 60 AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103 (410)
Q Consensus 60 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 103 (410)
.++-+..+....+-|++.+..+-+.++-+.+++..|.++|+.++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444445555566666666666666666666666666666655
No 354
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=58.34 E-value=43 Score=20.88 Aligned_cols=33 Identities=9% Similarity=0.182 Sum_probs=19.7
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040371 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150 (410)
Q Consensus 118 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 150 (410)
.+.|...++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345666666666666666666666655555543
No 355
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=57.73 E-value=69 Score=23.06 Aligned_cols=38 Identities=11% Similarity=0.131 Sum_probs=24.4
Q ss_pred hcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHH
Q 040371 88 KCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126 (410)
Q Consensus 88 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 126 (410)
..|+.+.|+++++.++ +....|...++++-..|...-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466667777777766 6666666666666666655444
No 356
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.65 E-value=2.4e+02 Score=29.29 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCC----------------------CC------CCHHHHHHHHHHHHhhCCHHH
Q 040371 8 SWNSMIGGFVRNARFDEALRFFREMLSSK----------------------VE------PDKFTFASVIYGCARLGALNH 59 (410)
Q Consensus 8 ~~n~li~~~~~~g~~~~a~~l~~~m~~~g----------------------~~------pd~~t~~~ll~a~~~~~~~~~ 59 (410)
.|-..|..+.-.|++++|-.+.-.|.... +. .+...|-.+|-.+.. .+..
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~- 471 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVK- 471 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHH-
Confidence 47778888888888888877766663211 11 134556677766655 2211
Q ss_pred HHHHHHHHHHc------------CC-------CccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCC
Q 040371 60 AYWVHNLIIEK------------KI-------ELNFILSAALIDMYSKCGKIQMAKEVFDTVQRND 106 (410)
Q Consensus 60 a~~~~~~~~~~------------g~-------~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~ 106 (410)
.+++....- .. ..+..+.-.|+..|...+++.+|.+.+-...+++
T Consensus 472 --~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 472 --GFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQDKD 535 (846)
T ss_pred --HHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhccChH
Confidence 111111110 00 1122334468999999999999999887776653
No 357
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=57.65 E-value=44 Score=20.82 Aligned_cols=31 Identities=6% Similarity=0.124 Sum_probs=16.6
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040371 18 RNARFDEALRFFREMLSSKVEPDKFTFASVI 48 (410)
Q Consensus 18 ~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll 48 (410)
+.|...++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555555554444
No 358
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=56.94 E-value=23 Score=32.01 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 149 (410)
-||..|..-.+.|+.++|+.+++|.++.|..--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 35688888888888888888888888888776666665444
No 359
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=56.48 E-value=2.9e+02 Score=29.83 Aligned_cols=78 Identities=8% Similarity=-0.161 Sum_probs=33.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCchHHHHHHHHHhc
Q 040371 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYL 254 (410)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 254 (410)
+...-.+.+.++++.|..+.+...+...-..+|...-...+.++...+..+....+...+..++..+-...+.++.+.
T Consensus 788 d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 788 DPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred CHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 455555566666666554433222222212334444444555555554433222222333333333333444444443
No 360
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=56.04 E-value=1.5e+02 Score=26.60 Aligned_cols=88 Identities=13% Similarity=0.021 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcc----cCChhhHHHHHHHHH
Q 040371 43 TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ----RNDVSVWNAMISGVA 118 (410)
Q Consensus 43 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~ 118 (410)
....-|+|++..+++.++....-+--+..-+.-..+...-|-.|+|.|+...+.++-..-. +.+...|.+++..|.
T Consensus 85 LcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 85 LCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHH
Confidence 3445578888888887765443222222111223445555667889988877766655432 345667888887776
Q ss_pred H-----cCChHHHHHHH
Q 040371 119 I-----HGLAADASAIF 130 (410)
Q Consensus 119 ~-----~g~~~~A~~l~ 130 (410)
. .|.+++|.++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 6 58999998887
No 361
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=54.08 E-value=1e+02 Score=25.72 Aligned_cols=17 Identities=18% Similarity=0.186 Sum_probs=7.8
Q ss_pred CCCCH-HHHHHHHHHHHc
Q 040371 138 VLPDS-ITFLGLLTACSH 154 (410)
Q Consensus 138 ~~p~~-~t~~~ll~a~~~ 154 (410)
+.|+. .++..+..++..
T Consensus 64 I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTS 81 (186)
T ss_dssp H-TT-HHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHH
Confidence 45543 455555555544
No 362
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.68 E-value=31 Score=22.90 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=9.2
Q ss_pred HHHHHHHcCChHHHHHHHHHH
Q 040371 113 MISGVAIHGLAADASAIFTKM 133 (410)
Q Consensus 113 li~~~~~~g~~~~A~~l~~~m 133 (410)
+|.+|.+.|++++|.+..+++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444443
No 363
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=53.26 E-value=1.5e+02 Score=25.67 Aligned_cols=92 Identities=20% Similarity=0.229 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHH--HHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHH
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKMEMFNVLP---DSITFL--GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 183 (410)
-.|.||--|.-+..+.+|-+.|.. ..|+.| |..++. .-+......|+++.|.+...+.... -+..|...+-.
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~ 104 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFH 104 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHH
Confidence 445555555555555556665543 345554 222222 3345556777777777777666533 33334323322
Q ss_pred HHHH----HHhcCCHHHHHHHHHh
Q 040371 184 MVDL----LGRAGHIEEAYGLITS 203 (410)
Q Consensus 184 li~~----~~~~g~~~~A~~~~~~ 203 (410)
|... +.|.|..++|+++.+.
T Consensus 105 Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 105 LQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2221 4566777777777665
No 364
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=52.97 E-value=58 Score=22.94 Aligned_cols=45 Identities=18% Similarity=0.277 Sum_probs=26.7
Q ss_pred HcCCHhHHHHHHHHHHHCCC-CCCHH-HHHHHHHHHHhhCCHHHHHH
Q 040371 18 RNARFDEALRFFREMLSSKV-EPDKF-TFASVIYGCARLGALNHAYW 62 (410)
Q Consensus 18 ~~g~~~~a~~l~~~m~~~g~-~pd~~-t~~~ll~a~~~~~~~~~a~~ 62 (410)
...+.++|+..|...++.-. +|+.+ ++..++.+++..|.++...+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777665422 22332 56666667777776665544
No 365
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=52.93 E-value=3e+02 Score=29.05 Aligned_cols=190 Identities=13% Similarity=0.091 Sum_probs=106.2
Q ss_pred HhcCCHHHHHHHHHhcc----cCCh-------hhHHHHHHHHH-HcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 040371 87 SKCGKIQMAKEVFDTVQ----RNDV-------SVWNAMISGVA-IHGLAADASAIFTKMEMF----NVLPDSITFLGLLT 150 (410)
Q Consensus 87 ~~~g~~~~A~~~f~~m~----~~~~-------~~~~~li~~~~-~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll~ 150 (410)
.-..++++|..+..+.. .++. ..|+++-.... ..|++++|.++-+..... -..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34678889888887654 3322 26776654443 468889999988877654 11223445566667
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH-----HHHhcCCH--HHHHHHHHhC-----CCCC----CHHHHH
Q 040371 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD-----LLGRAGHI--EEAYGLITSM-----TMEP----DVVVWR 214 (410)
Q Consensus 151 a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~-----~~~~~g~~--~~A~~~~~~m-----~~~p----~~~~~~ 214 (410)
+..-.|++++|..+..+..+. .-..+..++..... .+-..|+. ++.+..|... +.+| -..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777789999999888776542 22223333332222 23445632 2223333332 1122 233444
Q ss_pred HHHHHHHhcCchhHHHHH------HHhhc-cCCCc---hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCCceeE
Q 040371 215 ALLSACRTFKRLELGEVA------IVNIS-RLMGG---DYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSW 280 (410)
Q Consensus 215 ~li~~~~~~g~~~~a~~~------~~~~~-~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 280 (410)
.++.++.+ .+.+..- +.... |.... .+..|...+...|+.++|...++++..-...+.+.+.|
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 44545444 3333222 11111 11111 23367888899999999999999998765554444555
No 366
>PRK09687 putative lyase; Provisional
Probab=51.81 E-value=1.8e+02 Score=26.18 Aligned_cols=217 Identities=11% Similarity=-0.038 Sum_probs=140.2
Q ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH----HHHHHHHHhc--ccCChhhHH
Q 040371 38 EPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKI----QMAKEVFDTV--QRNDVSVWN 111 (410)
Q Consensus 38 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~----~~A~~~f~~m--~~~~~~~~~ 111 (410)
.+|.......+.++...|..+....+.. +.+ .+|..+-...+.+++..|+. +++...+..+ .+++...-.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~-ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~ 109 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIE-LCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRA 109 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHH-HHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHH
Confidence 4577777788888888876443333333 333 45777888888888888873 5677777766 456766666
Q ss_pred HHHHHHHHcCCh-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 040371 112 AMISGVAIHGLA-----ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186 (410)
Q Consensus 112 ~li~~~~~~g~~-----~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 186 (410)
..+.+++..+.. ..+.+.+..... .++..+-...+.++.+.++ +.+...+-.+.+ .++..+-...+.
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~----d~~~~VR~~A~~ 181 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK----DPNGDVRNWAAF 181 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc----CCCHHHHHHHHH
Confidence 677777665432 234455544443 3355666677888888887 456666666654 245556666677
Q ss_pred HHHhcC-CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHH-HHhhccCCCchHHHHHHHHHhcCChhHHHHHH
Q 040371 187 LLGRAG-HIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA-IVNISRLMGGDYVLLSNMYCYLKRWDTAENVR 264 (410)
Q Consensus 187 ~~~~~g-~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 264 (410)
++++.+ .-.++...+..+-..+|..+-...+.++.+.|+. .+... +..+...+ .....+.++...|.- +|...+
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L 257 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVL 257 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHH
Confidence 777653 2345555555443466888888888899888885 45544 44444333 456788888888884 688888
Q ss_pred HHHHhC
Q 040371 265 EIMKKK 270 (410)
Q Consensus 265 ~~m~~~ 270 (410)
..+.+.
T Consensus 258 ~~l~~~ 263 (280)
T PRK09687 258 DTLLYK 263 (280)
T ss_pred HHHHhh
Confidence 777653
No 367
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=50.76 E-value=31 Score=31.78 Aligned_cols=104 Identities=9% Similarity=-0.006 Sum_probs=59.6
Q ss_pred HHHHccCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCc
Q 040371 150 TACSHCGLVEEGRKYFDHMRSRYSIQP-QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPD---VVVWRALLSACRTFKR 225 (410)
Q Consensus 150 ~a~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~---~~~~~~li~~~~~~g~ 225 (410)
+-|.+.|.+++|...+.... .+.| +.+++..-..+|.+..++..|+.=.... +..| ...|..=..+-...|+
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A-iaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAA-IALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHH-HHhhHHHHHHHHHHHHHHHHHhh
Confidence 46778899999999998766 3345 7788888888898888887665433322 1111 1122222223233444
Q ss_pred hhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHHH
Q 040371 226 LELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAE 261 (410)
Q Consensus 226 ~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 261 (410)
..+|.+- .++++|.+. -|-..|++.....++.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNI----ELKKSLARINSLRERK 215 (536)
T ss_pred HHHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhh
Confidence 5555443 556666642 3444455555544444
No 368
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.28 E-value=76 Score=26.60 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=22.4
Q ss_pred cCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040371 104 RNDVSVWNAMISGVAIHGLAADASAIFTKMEM 135 (410)
Q Consensus 104 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 135 (410)
.|+...|..++..+...|+.++|.++..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35666677777777777777777777777665
No 369
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=49.94 E-value=1.8e+02 Score=28.87 Aligned_cols=60 Identities=12% Similarity=0.056 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHhhh
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF---LGLLTACSHCGLVEEGRKYFDHMRS 170 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~ 170 (410)
.-..++.-|.+.++.++|+.++..|.-.-. ....| +.+.+...+.-.-++.+..++.+..
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smnW~~~--g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMNWNTM--GEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCCcccc--HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 345678889999999999999999865422 12333 3344455555444555555555553
No 370
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=48.63 E-value=18 Score=25.36 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=20.9
Q ss_pred CccHHHHHHHHHHHHHHHHHCCcccCCccc
Q 040371 297 HPEAQAIDKILGSLIQRTKSEGFLPATELV 326 (410)
Q Consensus 297 ~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~ 326 (410)
.|...++++.+++...+++..|+.||...+
T Consensus 4 r~~li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 4 RGDLIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 355677888888888999999999998664
No 371
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=48.60 E-value=31 Score=22.91 Aligned_cols=24 Identities=21% Similarity=0.545 Sum_probs=18.9
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHH
Q 040371 11 SMIGGFVRNARFDEALRFFREMLS 34 (410)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~~ 34 (410)
.+|.+|.+.|++++|.+..+++..
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 368889999999999988888754
No 372
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.48 E-value=36 Score=35.42 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=24.1
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHH
Q 040371 189 GRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIV 234 (410)
Q Consensus 189 ~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 234 (410)
..+|+++.|++.-+++. |..+|..|.......|+.+.|+..++
T Consensus 654 Le~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ 696 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQ 696 (1202)
T ss_pred hhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 44556666665555543 45556666666556666555555533
No 373
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.43 E-value=3.1e+02 Score=27.58 Aligned_cols=17 Identities=6% Similarity=0.272 Sum_probs=9.1
Q ss_pred HcCCHhHHHHHHHHHHH
Q 040371 18 RNARFDEALRFFREMLS 34 (410)
Q Consensus 18 ~~g~~~~a~~l~~~m~~ 34 (410)
...+++.|+..|+....
T Consensus 261 ~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAE 277 (552)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 44455555555555544
No 374
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=46.57 E-value=53 Score=24.61 Aligned_cols=64 Identities=9% Similarity=0.063 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHcCCCcc
Q 040371 10 NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG--ALNHAYWVHNLIIEKKIELN 75 (410)
Q Consensus 10 n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~ 75 (410)
+.+|..|..+|+.++|..-+.++.... -.......++..+...+ .-+..-.++..+.+.+.-+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~ 71 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISK 71 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCH
Confidence 456778888899999998887763211 11122223333333321 23334455556655554433
No 375
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=46.49 E-value=2.6e+02 Score=26.49 Aligned_cols=59 Identities=10% Similarity=0.057 Sum_probs=37.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--ccCCHHHHHHHHHHhhh
Q 040371 110 WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSI--TFLGLLTACS--HCGLVEEGRKYFDHMRS 170 (410)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~ 170 (410)
|..... +...+++..|.++|+++... +.++.. .+..+..+|. ..-++++|.+.|+....
T Consensus 135 ~~~a~~-l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 135 WRRAKE-LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHH-HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344443 34678899999999998876 555544 2333334443 35677788888887664
No 376
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=45.59 E-value=1.9e+02 Score=24.51 Aligned_cols=59 Identities=14% Similarity=0.240 Sum_probs=40.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhh-------------cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 146 LGLLTACSHCGLVEEGRKYFDHMRSR-------------YSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 146 ~~ll~a~~~~g~~~~a~~~~~~m~~~-------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
.+++..|.+.-++.+++++++.|.+- .+..+.-...|.....+.++|.+|.|..++++-
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 35667777888888888888877631 012234455677777788888888888888765
No 377
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=44.65 E-value=1.4e+02 Score=23.69 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=18.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 040371 245 VLLSNMYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 245 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 270 (410)
..|.-++.+.|+++.+.++.+.+.+.
T Consensus 75 yYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 75 YYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 34556677888888888887776553
No 378
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=44.64 E-value=2e+02 Score=27.50 Aligned_cols=61 Identities=13% Similarity=0.093 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHc--CCCccHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 040371 42 FTFASVIYGCARLGALNHAYWVHNLIIEK--KIELNFILSAALIDMYSKCGKIQMAKEVFDTV 102 (410)
Q Consensus 42 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m 102 (410)
+++..|++...-+|+.....++.+.+.+. |-.|...+---+.-+|.-.|++.+|.++|-..
T Consensus 236 fsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 236 FSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666654444555554433 22222222223333445556666666666543
No 379
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=44.58 E-value=51 Score=24.84 Aligned_cols=26 Identities=8% Similarity=0.064 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHH
Q 040371 44 FASVIYGCARLGALNHAYWVHNLIIE 69 (410)
Q Consensus 44 ~~~ll~a~~~~~~~~~a~~~~~~~~~ 69 (410)
|..++..|...|..++|.+++.....
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55555555555555666555555544
No 380
>PRK12798 chemotaxis protein; Reviewed
Probab=44.37 E-value=2.9e+02 Score=26.42 Aligned_cols=180 Identities=13% Similarity=0.170 Sum_probs=110.0
Q ss_pred cCCHHHHHHHHHhcccC----ChhhHHHHHHHHH-HcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHH
Q 040371 89 CGKIQMAKEVFDTVQRN----DVSVWNAMISGVA-IHGLAADASAIFTKMEMFNVLPD----SITFLGLLTACSHCGLVE 159 (410)
Q Consensus 89 ~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~ 159 (410)
.|+.++|.+.|..+... ....|-+|+.+-. ...++.+|+++|+...-. -|- +....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 79999999999988643 4556777776654 356899999999988763 332 233444455667889999
Q ss_pred HHHHHHHHhhhhcCCCCChhHH-HHHHHHHHhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHH---
Q 040371 160 EGRKYFDHMRSRYSIQPQLEHY-GAMVDLLGRA---GHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA--- 232 (410)
Q Consensus 160 ~a~~~~~~m~~~~~~~~~~~~~-~~li~~~~~~---g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~--- 232 (410)
++..+-.+...+|.-.|-...+ ..++..+.+. ...+.-..++..|.-.--...|..+-..-...|+.+.|...
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9888777776665555543322 2333333333 34455566666663222356888888889999999998887
Q ss_pred HHhhccCCCchHHHHHHHHH-----hcCChhHHHHHHHHHHhCC
Q 040371 233 IVNISRLMGGDYVLLSNMYC-----YLKRWDTAENVREIMKKKG 271 (410)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~m~~~g 271 (410)
...+... ...-......|. -..+++++.+.+..+....
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~ 325 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRDK 325 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhh
Confidence 3333322 222223333332 2334556665555444433
No 381
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=44.30 E-value=2.6e+02 Score=25.84 Aligned_cols=50 Identities=14% Similarity=0.045 Sum_probs=28.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHccCCHHHHHHHHHHhh
Q 040371 118 AIHGLAADASAIFTKMEMFNVLPDSIT---FLGLLTACSHCGLVEEGRKYFDHMR 169 (410)
Q Consensus 118 ~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~~m~ 169 (410)
.+.|+..+|.+.|+++.++ .|=... -..|+.+|....-+.+...++...-
T Consensus 286 RklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3467777777777766553 221111 2346666666665555555555443
No 382
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=43.35 E-value=1.7e+02 Score=23.41 Aligned_cols=90 Identities=9% Similarity=0.048 Sum_probs=49.5
Q ss_pred HHHHHCCCCCCH--HHHHHHHHHHHhhCCHHHHHHHHHHHHHcCC-----CccHHHHHHHHHHHHhcCC-HHHHHHHHHh
Q 040371 30 REMLSSKVEPDK--FTFASVIYGCARLGALNHAYWVHNLIIEKKI-----ELNFILSAALIDMYSKCGK-IQMAKEVFDT 101 (410)
Q Consensus 30 ~~m~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~li~~y~~~g~-~~~A~~~f~~ 101 (410)
..|++.+..++. ...+.++.-.+..+++....++++.+..... ..+...|.+++...++... ---+..+|+-
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 344444444443 2455666666666666666666665533210 2344566777777666555 3445666666
Q ss_pred cccC----ChhhHHHHHHHHHH
Q 040371 102 VQRN----DVSVWNAMISGVAI 119 (410)
Q Consensus 102 m~~~----~~~~~~~li~~~~~ 119 (410)
|++. +..-|..||.+..+
T Consensus 106 Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 106 LKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred HHHcCCCCCHHHHHHHHHHHHc
Confidence 6543 34456677776554
No 383
>PRK13342 recombination factor protein RarA; Reviewed
Probab=43.20 E-value=3.1e+02 Score=26.33 Aligned_cols=43 Identities=16% Similarity=-0.035 Sum_probs=27.3
Q ss_pred hHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040371 109 VWNAMISGVAI---HGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151 (410)
Q Consensus 109 ~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 151 (410)
.+..+++++.+ .++.+.|+..+..|.+.|..|..+.-..+..+
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34445555554 46788888888888888877765544444444
No 384
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=42.84 E-value=2.6e+02 Score=27.38 Aligned_cols=116 Identities=12% Similarity=0.110 Sum_probs=71.7
Q ss_pred HcCCHhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 040371 18 RNARFDEAL-RFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAK 96 (410)
Q Consensus 18 ~~g~~~~a~-~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 96 (410)
..|+...|- ++|..+....-.|+...+-+. ....+|+++.+.+......+. +.....+...++.-..+.|+++.|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 456665544 455555554445555444433 456789999988887766543 3445567778888888899999998
Q ss_pred HHHHhcccCCh---hhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 040371 97 EVFDTVQRNDV---SVWNAMISGVAIHGLAADASAIFTKMEMF 136 (410)
Q Consensus 97 ~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 136 (410)
..-+.|....+ .........--+.|.++++...|++...-
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 88877763211 11111111223456777888888877653
No 385
>PRK11619 lytic murein transglycosylase; Provisional
Probab=42.68 E-value=4e+02 Score=27.47 Aligned_cols=241 Identities=10% Similarity=-0.023 Sum_probs=114.7
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--
Q 040371 14 GGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK-- 91 (410)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-- 91 (410)
..+.+.+++.+.+..+.. .+.+...-.....+....|+-++|.+....+=..| ...+...+.+++.+.+.|.
T Consensus 107 ~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 107 NELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred HHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCC
Confidence 344456777766663211 23344444556667777777665554444443333 2234455555555554444
Q ss_pred ----------------HHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--
Q 040371 92 ----------------IQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS-- 153 (410)
Q Consensus 92 ----------------~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-- 153 (410)
...|..+...+..........++..+ .++..+..++.. +.|+...-..++.++.
T Consensus 181 ~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rl 252 (644)
T PRK11619 181 PLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETFART-----TGPTDFTRQMAAVAFASV 252 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhc-----cCCChhhHHHHHHHHHHH
Confidence 33333333333111111111222221 222223222221 2223211111111221
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCchhHHH
Q 040371 154 HCGLVEEGRKYFDHMRSRYSIQPQL--EHYGAMVDLLGRAGHIEEAYGLITSMT-MEPDVVVWRALLSACRTFKRLELGE 230 (410)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~li~~~~~~g~~~~a~ 230 (410)
...+.+.|..++.......++.+.. ..+..+....+..+...+|...+.... ...|...+..-+......++.+.+.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHH
Confidence 2345577888887765443443332 233444333334333566777777652 2224444444455555777777766
Q ss_pred HHHHhhcc---CCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040371 231 VAIVNISR---LMGGDYVLLSNMYCYLKRWDTAENVREIMK 268 (410)
Q Consensus 231 ~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 268 (410)
..+..+.+ ....-..-+..++...|+.++|...|+...
T Consensus 333 ~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 333 TWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 65444422 122334557777777888888888887763
No 386
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=42.21 E-value=4e+02 Score=27.29 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCC-------HHHHHHHHHHHHHcCC
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA-------LNHAYWVHNLIIEKKI 72 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~-------~~~a~~~~~~~~~~g~ 72 (410)
...| ++|-.+.|.|++++|.++..+... ........|...+.++....+ -+....-|++..+...
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 3467 688999999999999999966544 345566778888888876532 2344455555555443
No 387
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=41.86 E-value=12 Score=25.31 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=16.8
Q ss_pred ceEEEecCCccccccCCccCC
Q 040371 386 RVIIVRDRIRFHRFEGGLCSC 406 (410)
Q Consensus 386 ~~i~~~~~~~~h~~~~g~~sc 406 (410)
..|-+.|.+..|+|+||+-+=
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 467889999999999998653
No 388
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=41.71 E-value=3.6e+02 Score=26.70 Aligned_cols=153 Identities=8% Similarity=0.070 Sum_probs=83.0
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHhccc--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040371 73 ELNFILSAALIDMYSKCGKIQMAKEVFDTVQR--NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLT 150 (410)
Q Consensus 73 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 150 (410)
..|....-++++.++..-.+.-.+.+-.+|.. .+...|-.++..|..+ ..+.-..+|+++.+.. -|.+.+.--+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHH
Confidence 34445555667777766666666666666653 4556777777777776 4556667777666643 24444444444
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 040371 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQ------LEHYGAMVDLLGRAGHIEEAYGLITSM----TMEPDVVVWRALLSAC 220 (410)
Q Consensus 151 a~~~~g~~~~a~~~~~~m~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~li~~~ 220 (410)
.+...++.+.+..+|..+..+ +-|. ...|.-|+..- ..+.+..+.+..++ +...-.+.+.-+-.-|
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 444446666777777666542 2220 12444444321 22344444444333 2223334444444556
Q ss_pred HhcCchhHHHHH
Q 040371 221 RTFKRLELGEVA 232 (410)
Q Consensus 221 ~~~g~~~~a~~~ 232 (410)
....++++|.++
T Consensus 216 s~~eN~~eai~I 227 (711)
T COG1747 216 SENENWTEAIRI 227 (711)
T ss_pred ccccCHHHHHHH
Confidence 666666666666
No 389
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=40.58 E-value=3e+02 Score=25.38 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=20.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhcCC
Q 040371 145 FLGLLTACSHCGLVEEGRKYFDHMRSRYSI 174 (410)
Q Consensus 145 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 174 (410)
|.-+...+.++|..+.|..+++.+.+- ++
T Consensus 157 ~~r~~~fl~~aG~~E~Ava~~Qa~lE~-n~ 185 (321)
T PF08424_consen 157 FLRLCRFLRQAGYTERAVALWQALLEF-NF 185 (321)
T ss_pred HHHHHHHHHHCCchHHHHHHHHHHHHH-Hc
Confidence 344445556788899999998888753 44
No 390
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.57 E-value=2.7e+02 Score=24.66 Aligned_cols=201 Identities=13% Similarity=0.071 Sum_probs=115.2
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 040371 9 WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSK 88 (410)
Q Consensus 9 ~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 88 (410)
|----.+|....++++|...+.+..+ +..-|...|. ....+++|.-+.+.+.+. .--+..++--..+|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 55556677777888888776666543 1222322222 123345555555555543 2234567788889999
Q ss_pred cCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHHHccCCHHHHHH
Q 040371 89 CGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNV--LPDS---ITFLGLLTACSHCGLVEEGRK 163 (410)
Q Consensus 89 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~---~t~~~ll~a~~~~g~~~~a~~ 163 (410)
+|..+-|--.+++.-+ ...+-++++|+++|++-..--. ..+. ..+..+-..+.+...+++|-.
T Consensus 104 ~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred hCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence 9999888777765421 2345667777777776543210 1111 223344445556666666655
Q ss_pred HHHHhhh---hcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhC---C--CCC-CHHHHHHHHHHHHhcCchhHHHHH
Q 040371 164 YFDHMRS---RYSIQPQL-EHYGAMVDLLGRAGHIEEAYGLITSM---T--MEP-DVVVWRALLSACRTFKRLELGEVA 232 (410)
Q Consensus 164 ~~~~m~~---~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m---~--~~p-~~~~~~~li~~~~~~g~~~~a~~~ 232 (410)
.|..-.. ...-.++. ..|.+.|-.|....++..|.+.++.- | ..| +..+...||.+| ..|+.|++..+
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 5543211 00111222 34556666677777899999999884 2 122 567778888776 45677777666
No 391
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=39.46 E-value=4.4e+02 Score=26.99 Aligned_cols=88 Identities=24% Similarity=0.348 Sum_probs=45.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHH-HccC-----------CHHHHHHHHHHhhhhcC----CCC-C
Q 040371 117 VAIHGLAADASAIFTKMEMFNVLPDS--ITFLGLLTAC-SHCG-----------LVEEGRKYFDHMRSRYS----IQP-Q 177 (410)
Q Consensus 117 ~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~-~~~g-----------~~~~a~~~~~~m~~~~~----~~~-~ 177 (410)
+...|++++|+.+|+-..+ .|. ...+.+|.-. +... -...|..+.+....... +.+ +
T Consensus 424 ~e~~g~~~dAi~Ly~La~~----~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~ 499 (613)
T PF04097_consen 424 AEERGRFEDAILLYHLAEE----YDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKN 499 (613)
T ss_dssp HHHCT-HHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHH
T ss_pred HHHCCCHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHH
Confidence 4456888888888876532 111 1122222221 1111 14556666665543211 111 2
Q ss_pred hhHHHHHHHH-----HHhcCCHHHHHHHHHhCCCCC
Q 040371 178 LEHYGAMVDL-----LGRAGHIEEAYGLITSMTMEP 208 (410)
Q Consensus 178 ~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~p 208 (410)
..++..|++. +...|++++|++.++++++-|
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 3455555553 567899999999999998888
No 392
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=38.65 E-value=3e+02 Score=24.96 Aligned_cols=28 Identities=18% Similarity=0.017 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 040371 142 SITFLGLLTACSHCGLVEEGRKYFDHMR 169 (410)
Q Consensus 142 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 169 (410)
...-..++.+.+...+.+...++++...
T Consensus 201 ~~~k~~~l~aLa~~~d~~~~~~~l~~~l 228 (324)
T PF11838_consen 201 PEEKRRLLSALACSPDPELLKRLLDLLL 228 (324)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHHc
Confidence 3334444444444445555455555444
No 393
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.41 E-value=5.3e+02 Score=27.63 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=14.8
Q ss_pred HHHcCCHhHHHHHHHHHHH
Q 040371 16 FVRNARFDEALRFFREMLS 34 (410)
Q Consensus 16 ~~~~g~~~~a~~l~~~m~~ 34 (410)
+..+|++++|+++|.++..
T Consensus 356 lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 356 LFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred HHHhhhHHHHHHHHHhhcc
Confidence 4567888999998888743
No 394
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=37.85 E-value=2.6e+02 Score=23.95 Aligned_cols=86 Identities=12% Similarity=0.057 Sum_probs=63.7
Q ss_pred HHHHhcCCHHHHHHHHHhccc--C------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHc
Q 040371 84 DMYSKCGKIQMAKEVFDTVQR--N------DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD-SITFLGLLTACSH 154 (410)
Q Consensus 84 ~~y~~~g~~~~A~~~f~~m~~--~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 154 (410)
+-+.+.|++++|..-|..... | -.+.|..-..++.+.+.++.|++--.+..+.+ |+ .....--..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 345788999999988876542 2 23567777788899999999999888887754 32 2223333567888
Q ss_pred cCCHHHHHHHHHHhhhh
Q 040371 155 CGLVEEGRKYFDHMRSR 171 (410)
Q Consensus 155 ~g~~~~a~~~~~~m~~~ 171 (410)
...+++|..=+..+.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 99999999999998854
No 395
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=37.29 E-value=1.5e+02 Score=24.78 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=18.8
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 040371 185 VDLLGRAGHIEEAYGLITSMTMEPDVVVWRALL 217 (410)
Q Consensus 185 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li 217 (410)
+-.|.+.|.+++|.+++++.--.|+......-+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL 150 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKLRMKL 150 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhHHHHH
Confidence 345667777777777777663245544444333
No 396
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=36.95 E-value=1.5e+02 Score=24.31 Aligned_cols=62 Identities=16% Similarity=0.074 Sum_probs=40.4
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 040371 133 MEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196 (410)
Q Consensus 133 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 196 (410)
++..|++++..-. .++.........-.|.++++.+.+. +..++..|.-.-++.+.+.|-+.+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEEE
Confidence 4455776655433 4455555555566788888888865 656666666666788888887754
No 397
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=36.84 E-value=2.8e+02 Score=24.08 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 040371 43 TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF 99 (410)
Q Consensus 43 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 99 (410)
.||-+.--+...|+++.|.+.|+...+....-+....|-=|..|- .|++.-|.+=|
T Consensus 101 vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~gR~~LAq~d~ 156 (297)
T COG4785 101 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRYKLAQDDL 156 (297)
T ss_pred HHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee-cCchHhhHHHH
Confidence 444444444555566666666555555433323333333333332 35555444433
No 398
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=36.43 E-value=2e+02 Score=22.96 Aligned_cols=66 Identities=12% Similarity=0.123 Sum_probs=39.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 040371 129 IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196 (410)
Q Consensus 129 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 196 (410)
+.+.+++.|++++.. -..++......+..-.|.++++.+.++ +...+..|.-.-++.+...|-+.+
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Glv~~ 73 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGLVHR 73 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCCEEE
Confidence 344455666665543 234556666666667777788777754 444455555555677777776543
No 399
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=36.42 E-value=2.1e+02 Score=23.97 Aligned_cols=41 Identities=12% Similarity=0.213 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcc--cCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 040371 92 IQMAKEVFDTVQ--RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNV 138 (410)
Q Consensus 92 ~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 138 (410)
+++|...|++.. +|+...|+.-+.... +|-++..++.+.+.
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 566777777654 577777777666553 35666666655543
No 400
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=36.07 E-value=74 Score=21.97 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=27.0
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhC
Q 040371 17 VRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG 55 (410)
Q Consensus 17 ~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 55 (410)
...|+.+.+.+++++..+.|..|.......+..+....|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 346788888888888887777777766666666665544
No 401
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=35.91 E-value=1.4e+02 Score=27.59 Aligned_cols=52 Identities=10% Similarity=0.179 Sum_probs=32.3
Q ss_pred HccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 153 SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
.+.|+..+|.+.|..+.++..+..-......||.++....-+.+...++-+-
T Consensus 286 RklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678888888888887765333222334456777777666666665555443
No 402
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=35.68 E-value=32 Score=23.03 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=17.8
Q ss_pred CCHhHHHHHHHHHHHCC-CCCCHH
Q 040371 20 ARFDEALRFFREMLSSK-VEPDKF 42 (410)
Q Consensus 20 g~~~~a~~l~~~m~~~g-~~pd~~ 42 (410)
=+++.|+..|.++...| ++|+.+
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChhhc
Confidence 47899999999998754 666654
No 403
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=34.65 E-value=1.7e+02 Score=20.85 Aligned_cols=61 Identities=8% Similarity=0.170 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHH
Q 040371 62 WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126 (410)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 126 (410)
.++..+.+.|+-... ..-..-+..-+.+.|.++++.++.++..+|.++..++-..|...-|
T Consensus 20 ~v~~~L~~~~Vlt~~----~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 20 YLWDHLLSRGVFTPD----MIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHhcCCCCHH----HHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 355555555533211 1122223445677888888888888888888888887776655443
No 404
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=34.18 E-value=2.9e+02 Score=26.46 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc--C---------ChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 040371 81 ALIDMYSKCGKIQMAKEVFDTVQR--N---------DVSVWNAMISGVAIHGLAADASAIFTKM 133 (410)
Q Consensus 81 ~li~~y~~~g~~~~A~~~f~~m~~--~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m 133 (410)
.|+..++-.|++..|.++++.+.- + .+.++--+.-+|...+++.+|.+.|...
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554421 0 2223334444444555555555555443
No 405
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=34.06 E-value=1.8e+02 Score=20.93 Aligned_cols=41 Identities=5% Similarity=0.003 Sum_probs=21.4
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 040371 62 WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTV 102 (410)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m 102 (410)
++|+.....|+..|..+|..+++...-+=..+...+++..|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 55555555555555555555555544444444444444444
No 406
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=34.05 E-value=14 Score=35.37 Aligned_cols=179 Identities=18% Similarity=0.190 Sum_probs=87.3
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHH--HHH------HCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcc
Q 040371 4 KDVVSWNSMIGGFVRNARFDEALRFFR--EML------SSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELN 75 (410)
Q Consensus 4 ~~~~~~n~li~~~~~~g~~~~a~~l~~--~m~------~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 75 (410)
||..+.-.++.-|+++ .-+.+-+|+ +.. ..++.||.++|.+=..+--+......|+..++.++ ||
T Consensus 372 pngks~vCiLhEy~q~--~lk~~pvyef~e~~n~stpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLI-----Pd 444 (650)
T KOG4334|consen 372 PNGKSKVCILHEYAQQ--CLKSLPVYEFAENDNNSTPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILI-----PD 444 (650)
T ss_pred CCCceeeehHHHHHHH--HhhhcceeehhhccCCCCcccccccccccccccccccchHHHHHHHHHHHHHHhc-----ch
Confidence 4555555666666543 222333332 111 13678888888877777777777788888777663 33
Q ss_pred HHHHHH--HHHHHHhcCCHHHHHHHHHhcc--cCCh----------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 040371 76 FILSAA--LIDMYSKCGKIQMAKEVFDTVQ--RNDV----------SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141 (410)
Q Consensus 76 ~~~~~~--li~~y~~~g~~~~A~~~f~~m~--~~~~----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 141 (410)
...-.. -=..-...|.-..-+++|+.+. .|.+ ..|+.|..++.++-.+.+ +.+=.+|...|-.-+
T Consensus 445 ~~~~~~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~g~~d-~~ik~E~i~~~nqks 523 (650)
T KOG4334|consen 445 LRVSEDNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNLGWND-LVIKKEMIGNGNQKS 523 (650)
T ss_pred hhhcccccccccccccccchhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhcCCcc-eeeeeeccCCCCccc
Confidence 332222 0000111233445577888765 3332 357777777776644431 223334444333333
Q ss_pred HHHHHH-HHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhc
Q 040371 142 SITFLG-LLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRA 191 (410)
Q Consensus 142 ~~t~~~-ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 191 (410)
.++... -..+=.-+.+..+|.++-.+-.-+ -+.|...+|.+|+.+|++.
T Consensus 524 e~im~~Gkht~~~~cknkr~gkQlASQ~ilq-~lHPh~~twGSlLriYGr~ 573 (650)
T KOG4334|consen 524 EVIMILGKHTEEAECKNKRQGKQLASQRILQ-KLHPHLLTWGSLLRIYGRL 573 (650)
T ss_pred eeEeeeccceeeeeeechhHHHHHHHHHHHH-HhCHHhhhHHHHHHHhhhh
Confidence 332210 000001123344444443332222 3445566666666666654
No 407
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=33.41 E-value=3.7e+02 Score=24.41 Aligned_cols=51 Identities=14% Similarity=-0.014 Sum_probs=34.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHHccCCHHHHHHHH
Q 040371 115 SGVAIHGLAADASAIFTKMEMFNVLPDSIT-------FLGLLTACSHCGLVEEGRKYF 165 (410)
Q Consensus 115 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------~~~ll~a~~~~g~~~~a~~~~ 165 (410)
+-..+.++.++|+..+.+....|+..|..+ ...+...|...|+...-.+..
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 334567788888888888888887766544 445666667777655444433
No 408
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=33.29 E-value=5.1e+02 Score=26.01 Aligned_cols=93 Identities=11% Similarity=0.081 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHH---hh-ccCCCchHHHHHHHH
Q 040371 178 LEHYGAMVDLLGRAGHIEEAYGLITSM--TMEPDVVVWRALLSACRTFKRLELGEVAIV---NI-SRLMGGDYVLLSNMY 251 (410)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~---~~-~~~~~~~~~~l~~~~ 251 (410)
..+|..-++--.+.|+++.+.-+|++. +...=...|--.+.-....|+.+.|..++. +. .|..+.+...-....
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 456777777777777777777777766 222222334333333333466666665511 11 122222222223334
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 040371 252 CYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 252 ~~~g~~~~a~~~~~~m~~~ 270 (410)
-..|++..|..+++.+.+.
T Consensus 377 e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HhhccHHHHHHHHHHHHhh
Confidence 4567888888888877654
No 409
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=33.28 E-value=1.3e+02 Score=19.21 Aligned_cols=32 Identities=22% Similarity=0.444 Sum_probs=18.3
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHH
Q 040371 12 MIGGFVRNARFDEALRFFREMLSSKVEPDKFTFA 45 (410)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~ 45 (410)
+.-++.+.|++++|.+..+.+++ +.|+-.-..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~ 38 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHH
Confidence 34456677777777777777765 355544333
No 410
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=32.99 E-value=81 Score=16.64 Aligned_cols=27 Identities=15% Similarity=0.005 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 040371 56 ALNHAYWVHNLIIEKKIELNFILSAALI 83 (410)
Q Consensus 56 ~~~~a~~~~~~~~~~g~~~~~~~~~~li 83 (410)
+.+.++.+|+++++.. +.+..+|...+
T Consensus 2 ~~~~~r~i~e~~l~~~-~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKF-PKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 3455555555555442 23444444433
No 411
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=32.98 E-value=2.3e+02 Score=24.89 Aligned_cols=56 Identities=14% Similarity=-0.050 Sum_probs=34.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 040371 113 MISGVAIHGLAADASAIFTKMEM----FN-VLPDSITFLGLLTACSHCGLVEEGRKYFDHM 168 (410)
Q Consensus 113 li~~~~~~g~~~~A~~l~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 168 (410)
|..-|.+.|++++|+++|+.+.. +| ..+...+...++.+..+.|+.+....+--++
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45667777777777777777642 22 1234455566667777778777766654443
No 412
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=32.83 E-value=1.6e+02 Score=25.91 Aligned_cols=52 Identities=17% Similarity=0.091 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCchhHHHHH
Q 040371 181 YGAMVDLLGRAGHIEEAYGLITSMT--------MEPDVVVWRALLSACRTFKRLELGEVA 232 (410)
Q Consensus 181 ~~~li~~~~~~g~~~~A~~~~~~m~--------~~p~~~~~~~li~~~~~~g~~~~a~~~ 232 (410)
..-|..-|.+.|++++|.++|+.+. ..+...+...+..++...|+.+....+
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3456667888888888888888771 112344555666777788888877766
No 413
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=32.51 E-value=1.6e+02 Score=25.24 Aligned_cols=82 Identities=18% Similarity=0.289 Sum_probs=58.9
Q ss_pred HhHHHHHHHHHHHCCC-------CCCHHHHHHHHHHHHhhC---------CHHHHHHHHHHHHHcCCCc-cHHHHHHHHH
Q 040371 22 FDEALRFFREMLSSKV-------EPDKFTFASVIYGCARLG---------ALNHAYWVHNLIIEKKIEL-NFILSAALID 84 (410)
Q Consensus 22 ~~~a~~l~~~m~~~g~-------~pd~~t~~~ll~a~~~~~---------~~~~a~~~~~~~~~~g~~~-~~~~~~~li~ 84 (410)
.+.|+.++..|--..+ .-...-|..+..+|++.| +++.-.++++..++.|++. =+.+|+++|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 5778888888843211 124567889999999887 5677788888888888653 3577888887
Q ss_pred HHHhcCCHHHHHHHHHhcc
Q 040371 85 MYSKCGKIQMAKEVFDTVQ 103 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~ 103 (410)
--.-.-+.++..++|..++
T Consensus 217 k~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 217 KETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccCCCCHHHHHHHHHHhh
Confidence 5555556888888887654
No 414
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=32.09 E-value=1.6e+02 Score=19.81 Aligned_cols=46 Identities=17% Similarity=0.051 Sum_probs=23.2
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040371 105 NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTA 151 (410)
Q Consensus 105 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 151 (410)
+....++-++..++...-.++++..+.+....|. .+..+|.--+..
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~ 51 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRS 51 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 3444555555655555555666666666665553 233444433333
No 415
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=31.91 E-value=4.7e+02 Score=25.16 Aligned_cols=234 Identities=11% Similarity=-0.030 Sum_probs=120.3
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 040371 13 IGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKI 92 (410)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 92 (410)
|.++...| ..+++.+....... ++...+.....++....+......+.+.+ -.++..+.......+.+.+..
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L----~d~~~~vr~aaa~ALg~i~~~ 116 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVL----QAGPEGLCAGIQAALGWLGGR 116 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHh----cCCCHHHHHHHHHHHhcCCch
Confidence 67777777 56777766666432 33344444444444333333233333333 245666788888888888887
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc
Q 040371 93 QMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY 172 (410)
Q Consensus 93 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 172 (410)
+....+..-+..++...-.+.+.++...+. ++...+....+ .+|...-...+.++...+..+. ...+..+..
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a-~~~L~~al~-- 188 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALGELPRRLS-ESTLRLYLR-- 188 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccc-hHHHHHHHc--
Confidence 777777777766676666566666665442 23344444433 4555666666666666665433 333333332
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCchHHHHHHHHH
Q 040371 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYC 252 (410)
Q Consensus 173 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 252 (410)
.++..+-..-+.++...|. ++|.......-..|+......+.......|.. .+...+..+-.. +.+-...+.++.
T Consensus 189 --d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~-~a~~~L~~ll~d-~~vr~~a~~AlG 263 (410)
T TIGR02270 189 --DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGP-DAQAWLRELLQA-AATRREALRAVG 263 (410)
T ss_pred --CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCch-hHHHHHHHHhcC-hhhHHHHHHHHH
Confidence 2455566666667777776 55555544421223333333333333332322 333332222211 124444555555
Q ss_pred hcCChhHHHHHHHHH
Q 040371 253 YLKRWDTAENVREIM 267 (410)
Q Consensus 253 ~~g~~~~a~~~~~~m 267 (410)
+.|+..-+..+.+.|
T Consensus 264 ~lg~p~av~~L~~~l 278 (410)
T TIGR02270 264 LVGDVEAAPWCLEAM 278 (410)
T ss_pred HcCCcchHHHHHHHh
Confidence 555555444444433
No 416
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.83 E-value=4.7e+02 Score=25.07 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcccC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040371 77 ILSAALIDMYSKCGKIQMAKEVFDTVQRN------DVSVWNAMISGVAIHGLAADASAIFTKMEM 135 (410)
Q Consensus 77 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 135 (410)
....-+.+.|..||+++.|.+.+-+...- -+..|-.+|..-.-.|+|......-.+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 45667888999999999999999885421 233555666666667777777776666544
No 417
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=31.47 E-value=3.2e+02 Score=23.01 Aligned_cols=23 Identities=13% Similarity=0.323 Sum_probs=16.9
Q ss_pred HHHHHHccCCHHHHHHHHHHhhh
Q 040371 148 LLTACSHCGLVEEGRKYFDHMRS 170 (410)
Q Consensus 148 ll~a~~~~g~~~~a~~~~~~m~~ 170 (410)
.+-.|.+.|.+++|.+++++..+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 44567788888888888877764
No 418
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=31.23 E-value=1.1e+02 Score=21.08 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=26.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 040371 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154 (410)
Q Consensus 118 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 154 (410)
...|+.+.+.+++++....|..|.......+..+...
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~ 48 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE 48 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4468888999999999888888877666666665544
No 419
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=31.15 E-value=2e+02 Score=20.68 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=27.4
Q ss_pred HHHcCCHhHHHHHHHHHHH----CCCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 040371 16 FVRNARFDEALRFFREMLS----SKVEPD----KFTFASVIYGCARLGALNHAYWVHNLIIE 69 (410)
Q Consensus 16 ~~~~g~~~~a~~l~~~m~~----~g~~pd----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 69 (410)
..+.|++.+|++.+.+... .+..+. ......+.......|+.++|.+.++..++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3567888888666665543 222211 11222233344455666666666655544
No 420
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=31.07 E-value=1.6e+02 Score=19.52 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=23.4
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----ccCCHHHHHHH
Q 040371 118 AIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS-----HCGLVEEGRKY 164 (410)
Q Consensus 118 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-----~~g~~~~a~~~ 164 (410)
...|++-+|-++++++-.....|....+..+|.... +.|+.+.|..+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 345667777777766654322334444555554433 34555555443
No 421
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=30.85 E-value=3e+02 Score=27.76 Aligned_cols=85 Identities=8% Similarity=-0.031 Sum_probs=49.8
Q ss_pred HhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcc---cCChhhHHHHHHHHHHcCChHHHHH
Q 040371 52 ARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ---RNDVSVWNAMISGVAIHGLAADASA 128 (410)
Q Consensus 52 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~ 128 (410)
-..|+...|...+...........-+..-.|.+...+.|...+|..++.+-. .....++-.+-.+|....+.+.|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 3456666666655555433211112223345555566667777777766543 2334566667777777778888888
Q ss_pred HHHHHHHC
Q 040371 129 IFTKMEMF 136 (410)
Q Consensus 129 l~~~m~~~ 136 (410)
.|++..+.
T Consensus 698 ~~~~a~~~ 705 (886)
T KOG4507|consen 698 AFRQALKL 705 (886)
T ss_pred HHHHHHhc
Confidence 88776654
No 422
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=30.70 E-value=1.2e+02 Score=27.59 Aligned_cols=43 Identities=12% Similarity=-0.033 Sum_probs=31.5
Q ss_pred CCCCHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHH
Q 040371 37 VEPDKF-TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILS 79 (410)
Q Consensus 37 ~~pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 79 (410)
+.||.. -|+..|....+.||+++|++++++..+.|+..-..+|
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 345554 3568888888999999999999999888865433333
No 423
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=30.59 E-value=4.2e+02 Score=24.21 Aligned_cols=63 Identities=14% Similarity=0.107 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 141 DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP---QLEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 141 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
...++..+...+.+.|.++.|...+..+... +..+ .+...-.-...+-..|+.++|...++..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~-~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQL-NPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhcc-CCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567888888999999999999988887742 2111 2334445566677778888888776654
No 424
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=30.57 E-value=5.2e+02 Score=25.18 Aligned_cols=60 Identities=10% Similarity=-0.098 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCchhHHHHHHHhhccCC---CchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 040371 213 WRALLSACRTFKRLELGEVAIVNISRLM---GGDYVLLSNMYCYLKRWDTAENVREIMKKKGV 272 (410)
Q Consensus 213 ~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 272 (410)
...|+.-|...|++.+|.+.+.++..+- ..++-+++.+..+.|+-+.-..++++.-..|+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 4567778888888888888877766442 24566777777777776666666666665554
No 425
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=30.35 E-value=1.2e+02 Score=22.74 Aligned_cols=44 Identities=14% Similarity=0.067 Sum_probs=22.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 040371 114 ISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL 157 (410)
Q Consensus 114 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 157 (410)
+..+...+..-.|.++++++.+.+..++..|.--.|..+...|.
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 33344444444556666666555555555555455555555544
No 426
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=29.97 E-value=3.4e+02 Score=22.97 Aligned_cols=52 Identities=10% Similarity=0.174 Sum_probs=29.6
Q ss_pred HHHhcCCHHHHHHHHHhccc------CChhhHHHHHH-HHHHcCC--hHHHHHHHHHHHHC
Q 040371 85 MYSKCGKIQMAKEVFDTVQR------NDVSVWNAMIS-GVAIHGL--AADASAIFTKMEMF 136 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~------~~~~~~~~li~-~~~~~g~--~~~A~~l~~~m~~~ 136 (410)
.....|++++|.+-++++.+ +-...|..+.. +|+.++. +-+|.-++.-....
T Consensus 38 ~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 34556777777777766642 23345666555 5666654 44555565555443
No 427
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=29.96 E-value=3.4e+02 Score=22.97 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=14.2
Q ss_pred HhcCChhHHHHHHHHHHh
Q 040371 252 CYLKRWDTAENVREIMKK 269 (410)
Q Consensus 252 ~~~g~~~~a~~~~~~m~~ 269 (410)
.+.|+++.|.+.++-|..
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 467888888888888865
No 428
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=29.91 E-value=1.4e+02 Score=22.42 Aligned_cols=45 Identities=7% Similarity=-0.010 Sum_probs=24.1
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCC
Q 040371 12 MIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA 56 (410)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 56 (410)
++.....++..-.|-++++++.+.+..++..|.-..|+.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344444445555566666666655555555555555555555443
No 429
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=29.79 E-value=2.4e+02 Score=21.01 Aligned_cols=62 Identities=8% Similarity=0.025 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHcCC
Q 040371 9 WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG--ALNHAYWVHNLIIEKKI 72 (410)
Q Consensus 9 ~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~ 72 (410)
...++.-|...+++++|..-+.++..... .......++..+...+ .-+....++..+.+.+.
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~~~~~--~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~ 68 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELKLPEQ--HHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANV 68 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCC
Confidence 34678889999999999999988753221 2223334444444432 23445566666665554
No 430
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.71 E-value=3.5e+02 Score=22.99 Aligned_cols=105 Identities=10% Similarity=0.024 Sum_probs=64.3
Q ss_pred HHHHHHHhcccCC-hhhHHHH-----HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHccCCHHHHH
Q 040371 94 MAKEVFDTVQRND-VSVWNAM-----ISGVAIHGLAADASAIFTKMEMFNVLPDSITFL-----GLLTACSHCGLVEEGR 162 (410)
Q Consensus 94 ~A~~~f~~m~~~~-~~~~~~l-----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-----~ll~a~~~~g~~~~a~ 162 (410)
+.....+.+...+ ..+|..+ ...+...|++++|..-++.-... |....+. -|.......|.+|+|.
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3334444444333 3344333 34567788888888888766542 2223333 3445566788889999
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 163 KYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 163 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
..++....+ +.. ...-..-.+.+...|+-++|+.-|++.
T Consensus 147 ~~L~t~~~~-~w~--~~~~elrGDill~kg~k~~Ar~ay~kA 185 (207)
T COG2976 147 KTLDTIKEE-SWA--AIVAELRGDILLAKGDKQEARAAYEKA 185 (207)
T ss_pred HHHhccccc-cHH--HHHHHHhhhHHHHcCchHHHHHHHHHH
Confidence 888887753 332 222334457788888888888887765
No 431
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=29.60 E-value=2.4e+02 Score=28.85 Aligned_cols=47 Identities=4% Similarity=-0.088 Sum_probs=26.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCH
Q 040371 112 AMISGVAIHGLAADASAIFTKMEMF--NVLPDSITFLGLLTACSHCGLV 158 (410)
Q Consensus 112 ~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~ 158 (410)
+++.+|..+|++-.+.++++..... |-+.=...++..|+...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 5666667777777776666666543 2122223455555666666654
No 432
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=29.12 E-value=33 Score=17.03 Aligned_cols=13 Identities=31% Similarity=0.457 Sum_probs=9.5
Q ss_pred ccchhhHHHHHhh
Q 040371 370 CHDCHSWIKMISR 382 (410)
Q Consensus 370 c~~~~~~~~~~~~ 382 (410)
-...|+++|++|.
T Consensus 9 ~qglhe~ikli~n 21 (23)
T PF08225_consen 9 FQGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHHhc
Confidence 3457888888874
No 433
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=28.72 E-value=5.5e+02 Score=24.89 Aligned_cols=83 Identities=17% Similarity=0.166 Sum_probs=57.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH--------HHhcCCHHHHHHHHHhccc--
Q 040371 35 SKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM--------YSKCGKIQMAKEVFDTVQR-- 104 (410)
Q Consensus 35 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--------y~~~g~~~~A~~~f~~m~~-- 104 (410)
..+.||.++.+=+.+.++..-..+....+|+.-.+.+ .|=...+-+||-. -.+...-+++.++++.|+.
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L 255 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQL 255 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhc
Confidence 4588999988888888888888888889998888876 3333333333321 2355667889999999884
Q ss_pred --CChhhHHHHHHHHH
Q 040371 105 --NDVSVWNAMISGVA 118 (410)
Q Consensus 105 --~~~~~~~~li~~~~ 118 (410)
.|+.-+-+|..-|+
T Consensus 256 ~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 256 SVEDVPDFFSLAQYYS 271 (669)
T ss_pred ccccchhHHHHHHHHh
Confidence 35555666655554
No 434
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=28.53 E-value=6.2e+02 Score=25.47 Aligned_cols=177 Identities=12% Similarity=0.100 Sum_probs=112.6
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 040371 74 LNFILSAALIDMYSKCGKIQMAKEVFDTVQRND---VSVWNAMISGVAIHGLAADASAIFTKMEMFNVL--PDSITFLGL 148 (410)
Q Consensus 74 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~l 148 (410)
++..+|+.-++--.+.|+.+.+.-+|++..-|- ...|--.+.-.-..|+.+-|-.++..-.+--++ |....+.+
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a- 373 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA- 373 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH-
Confidence 457888999999999999999999999887552 234555555555558888888777665554333 22333333
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----
Q 040371 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQ-LEHYGAMVDLLGRAGHIEEAY---GLITSM-TMEPDVVVWRALLS----- 218 (410)
Q Consensus 149 l~a~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~li~----- 218 (410)
.-+-..|+++.|..+++...++ . |+ ...-..-+....+.|..+.+. .++... +..-+..+...+.-
T Consensus 374 -~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 374 -RFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred -HHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 2334578999999999999875 3 55 334444556677888888877 444443 22223222222222
Q ss_pred HHHhcCchhHHHHHHHhh---ccCCCchHHHHHHHHHhcC
Q 040371 219 ACRTFKRLELGEVAIVNI---SRLMGGDYVLLSNMYCYLK 255 (410)
Q Consensus 219 ~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g 255 (410)
.+...++.+.|..++.+. .|++...|..+++.....+
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 134567778888884444 4556666777777766555
No 435
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.26 E-value=7.7e+02 Score=26.43 Aligned_cols=127 Identities=16% Similarity=0.127 Sum_probs=79.1
Q ss_pred HHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 040371 85 MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKY 164 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 164 (410)
....||+++.|.+.-.++. |..+|..|...-.+.|+.+-|.-.|++.+. |..|--.|.-.|+.++-.++
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 4467888888887766665 556788999888889999888888887654 23333345556787776666
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHh
Q 040371 165 FDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVN 235 (410)
Q Consensus 165 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 235 (410)
......+ -|. +-.-+. -...|+.++-.++++.-+..|-.. + ....+|.-++|+++..+
T Consensus 721 ~~iae~r----~D~-~~~~qn--alYl~dv~ervkIl~n~g~~~lay-----l-ta~~~G~~~~ae~l~ee 778 (1202)
T KOG0292|consen 721 MKIAEIR----NDA-TGQFQN--ALYLGDVKERVKILENGGQLPLAY-----L-TAAAHGLEDQAEKLGEE 778 (1202)
T ss_pred HHHHHhh----hhh-HHHHHH--HHHhccHHHHHHHHHhcCcccHHH-----H-HHhhcCcHHHHHHHHHh
Confidence 5555432 121 111111 123577888888888776554221 1 12457777777777433
No 436
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=28.26 E-value=2.6e+02 Score=28.26 Aligned_cols=57 Identities=11% Similarity=0.161 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 040371 40 DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEV 98 (410)
Q Consensus 40 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 98 (410)
+...-.-++..|.+.|-.+.+..+.+.+-..-+ ...-|..-+..+.++|+.+.+..+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i 460 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRI 460 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHH
Confidence 444556677777777777777777765544321 112333444555555555444333
No 437
>PF13934 ELYS: Nuclear pore complex assembly
Probab=27.72 E-value=4.1e+02 Score=23.07 Aligned_cols=54 Identities=13% Similarity=0.033 Sum_probs=25.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 040371 113 MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169 (410)
Q Consensus 113 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 169 (410)
++.++...|+...|+.+++.+.-... +......++.+ ..++.+.+|..+-+...
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~-La~~~v~EAf~~~R~~~ 167 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA-LANGLVTEAFSFQRSYP 167 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-HHcCCHHHHHHHHHhCc
Confidence 55555656666666666655422111 11112222222 34456666666554443
No 438
>COG5210 GTPase-activating protein [General function prediction only]
Probab=27.66 E-value=5.5e+02 Score=25.40 Aligned_cols=82 Identities=9% Similarity=0.087 Sum_probs=55.2
Q ss_pred HhHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhhCCH-HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 040371 22 FDEALRFFREMLSSKVEPDKF-----TFASVIYGCARLGAL-NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMA 95 (410)
Q Consensus 22 ~~~a~~l~~~m~~~g~~pd~~-----t~~~ll~a~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 95 (410)
-++|...+..+.+...-|+.+ ........+.. -+ +.--+++..+.+.|+......+..++.++.+...++.|
T Consensus 319 Ee~AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~~l~~--~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~ 396 (496)
T COG5210 319 EEQAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDD--LVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYA 396 (496)
T ss_pred hHHHHHHHHHHHHhccchhhcccCCcHHHHHHHHHHH--HHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHH
Confidence 567777777777632233322 22222222211 22 23447888999999999999999999999999999999
Q ss_pred HHHHHhcccC
Q 040371 96 KEVFDTVQRN 105 (410)
Q Consensus 96 ~~~f~~m~~~ 105 (410)
.++++.+---
T Consensus 397 lriwD~lf~e 406 (496)
T COG5210 397 LRIWDCLFLE 406 (496)
T ss_pred HHHHHHHHHh
Confidence 9999887643
No 439
>PRK10941 hypothetical protein; Provisional
Probab=27.35 E-value=4.6e+02 Score=23.54 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 040371 10 NSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLII 68 (410)
Q Consensus 10 n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 68 (410)
+.+-.+|.+.++++.|+.+.+.+..-. +.|..-+.--.-.+.+.|....|..=++..+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 444444555555555555555444421 1122233333334445555555544444443
No 440
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=26.89 E-value=1.3e+02 Score=22.86 Aligned_cols=46 Identities=17% Similarity=0.101 Sum_probs=25.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 040371 112 AMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL 157 (410)
Q Consensus 112 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 157 (410)
.++......+.+-.|.++++.|...+...+..|.---|..+...|.
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 3445555555566666777777666666666655555555555443
No 441
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=26.66 E-value=4.1e+02 Score=22.81 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHCCCCC----CHHHHHH-HHHHHHccCCHHHHHHHHHHhhhh
Q 040371 123 AADASAIFTKMEMFNVLP----DSITFLG-LLTACSHCGLVEEGRKYFDHMRSR 171 (410)
Q Consensus 123 ~~~A~~l~~~m~~~g~~p----~~~t~~~-ll~a~~~~g~~~~a~~~~~~m~~~ 171 (410)
...|++.|.+..+..-.| +..+..- +.....+.|+.++|.+.|..+...
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 345666666665443222 2333333 334456778888888888887754
No 442
>PHA02875 ankyrin repeat protein; Provisional
Probab=26.58 E-value=5.6e+02 Score=24.29 Aligned_cols=205 Identities=13% Similarity=0.096 Sum_probs=100.8
Q ss_pred HHHhhCCHHHHHHHHHHHHHcCCCccHHH--HHHHHHHHHhcCCHHHHHHHHHhcccCChh---hHHHHHHHHHHcCChH
Q 040371 50 GCARLGALNHAYWVHNLIIEKKIELNFIL--SAALIDMYSKCGKIQMAKEVFDTVQRNDVS---VWNAMISGVAIHGLAA 124 (410)
Q Consensus 50 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~ 124 (410)
..+..|+.+.+ +.+++.|..++... ..+.+...++.|+.+-+.-+++.-..++.. .++ -+...+..|+.+
T Consensus 8 ~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t-~L~~A~~~g~~~ 82 (413)
T PHA02875 8 DAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIES-ELHDAVEEGDVK 82 (413)
T ss_pred HHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCccc-HHHHHHHCCCHH
Confidence 33455666554 44455677666433 345566777889988777776653333221 223 344456678877
Q ss_pred HHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhH--HHHHHHHHHhcCCHHHHHH
Q 040371 125 DASAIFTKMEMFNVLPDSI---TFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEH--YGAMVDLLGRAGHIEEAYG 199 (410)
Q Consensus 125 ~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~ 199 (410)
.+..+++ .|..++.. .-.+.+...+..|+.+-+..+++. |..|+... -.+.+...+..|+.+-+..
T Consensus 83 ~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~-----gad~~~~~~~g~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 83 AVEELLD----LGKFADDVFYKDGMTPLHLATILKKLDIMKLLIAR-----GADPDIPNTDKFSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred HHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhC-----CCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 6555554 33222111 011233444556777655555432 54443211 1223344556788777666
Q ss_pred HHHhCCCCC---CHHHHHHHHHHHHhcCchhHHHHHHHhhccCCC---chHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 040371 200 LITSMTMEP---DVVVWRALLSACRTFKRLELGEVAIVNISRLMG---GDYVLLSNMYCYLKRWDTAENVREIMKKKGVR 273 (410)
Q Consensus 200 ~~~~m~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 273 (410)
+++.- ..+ |..-++.|.. .+..|+.+.+..++......+. .....++..-+..|+.+-+ +.+.+.|..
T Consensus 154 Ll~~g-~~~~~~d~~g~TpL~~-A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv----~~Ll~~gad 227 (413)
T PHA02875 154 LIDHK-ACLDIEDCCGCTPLII-AMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIV----RLFIKRGAD 227 (413)
T ss_pred HHhcC-CCCCCCCCCCCCHHHH-HHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHH----HHHHHCCcC
Confidence 66543 222 3333334433 4556777766655433221111 1112334434455665443 444456654
Q ss_pred C
Q 040371 274 K 274 (410)
Q Consensus 274 ~ 274 (410)
+
T Consensus 228 ~ 228 (413)
T PHA02875 228 C 228 (413)
T ss_pred c
Confidence 3
No 443
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=26.50 E-value=2.5e+02 Score=20.24 Aligned_cols=36 Identities=6% Similarity=0.094 Sum_probs=26.4
Q ss_pred hcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCCh
Q 040371 88 KCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLA 123 (410)
Q Consensus 88 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~ 123 (410)
..-+.+.+.++++.++.++..+|..+..++-..|..
T Consensus 46 ~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 46 KPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred CCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 345677888888888888888888888887654543
No 444
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=26.41 E-value=5.6e+02 Score=24.28 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=9.6
Q ss_pred HcCCHhHHHHHHHHHHHC
Q 040371 18 RNARFDEALRFFREMLSS 35 (410)
Q Consensus 18 ~~g~~~~a~~l~~~m~~~ 35 (410)
..+++..|.++|+.+...
T Consensus 143 n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR 160 (379)
T ss_pred hcCCHHHHHHHHHHHHHh
Confidence 445555555555555544
No 445
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=26.39 E-value=5.1e+02 Score=23.81 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=18.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 040371 129 IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169 (410)
Q Consensus 129 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 169 (410)
+++.|...++.|.-+.|.-+.-.+++.=.+.+...+++.+.
T Consensus 265 L~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 265 LWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 44444444444444444444444444444444444444444
No 446
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=25.47 E-value=1.4e+02 Score=22.60 Aligned_cols=42 Identities=10% Similarity=-0.011 Sum_probs=16.7
Q ss_pred HHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 040371 50 GCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK 91 (410)
Q Consensus 50 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 91 (410)
.....+..-.|.++++.+.+.+...+..|.---++.+.+.|-
T Consensus 16 ~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 16 LLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 333333333444444444444444444333333344444443
No 447
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=25.40 E-value=3.6e+02 Score=24.93 Aligned_cols=71 Identities=15% Similarity=0.135 Sum_probs=44.4
Q ss_pred HHHH--HHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040371 81 ALID--MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC 152 (410)
Q Consensus 81 ~li~--~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 152 (410)
.|++ +|.|..+.-...++++.+...|...-++++.+.. .|+.+.--..|+.|...|+.++......+...+
T Consensus 279 ~LmdfI~~lK~r~~y~~~kfvd~L~r~d~e~~~~L~~ai~-~~~~~~~Ysa~R~~k~~g~~~~~~~v~~lae~l 351 (354)
T TIGR01914 279 VLMDFIAYLKARDFYSWPKFVDFLARRDPEISLQLTDAIL-NGDEEAFYTALRELKKSGVRYDPEQVDALAEIL 351 (354)
T ss_pred HHHHHHHHHhhhhhcchHHHHHHHhccChHHHHHHHHHHH-cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence 4444 3444444455666677666666666666666554 455666667777777778777777666665544
No 448
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=25.33 E-value=1.5e+02 Score=17.17 Aligned_cols=22 Identities=27% Similarity=0.649 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcCCHhHHHHHHH
Q 040371 9 WNSMIGGFVRNARFDEALRFFR 30 (410)
Q Consensus 9 ~n~li~~~~~~g~~~~a~~l~~ 30 (410)
|-.+-..+-+.|++++|..+|+
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 4455666777888888888844
No 449
>PRK14015 pepN aminopeptidase N; Provisional
Probab=25.27 E-value=6.2e+02 Score=27.28 Aligned_cols=150 Identities=15% Similarity=0.146 Sum_probs=76.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHH
Q 040371 110 WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ-LEHYGAMVDLL 188 (410)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~ 188 (410)
-|..+..++..+..+......++..... +-.--.+.|.++.+.+. .+...+++..-+++.-.|- ..-|-++...-
T Consensus 685 ~n~~l~~l~~~~~~~~~~~~~~~~~~a~---~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~ 760 (875)
T PRK14015 685 RNVCLSYLAAADDEEAAELAEAQFDQAD---NMTDRLAALSALVNADL-PERDEALADFYDRWKDDPLVMDKWFALQATS 760 (875)
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHhhCC---CHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhCCCchhhHHHHHHHhCC
Confidence 3555555555444433333444444432 22222334444444333 2223333333322222222 22344433332
Q ss_pred HhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCch------hHHHHH----HHhhccCCCchHHHHHHHHHhcCCh
Q 040371 189 GRAGHIEEAYGLITSMTMEP-DVVVWRALLSACRTFKRL------ELGEVA----IVNISRLMGGDYVLLSNMYCYLKRW 257 (410)
Q Consensus 189 ~~~g~~~~A~~~~~~m~~~p-~~~~~~~li~~~~~~g~~------~~a~~~----~~~~~~~~~~~~~~l~~~~~~~g~~ 257 (410)
...+-++...++...-.+.+ |..-..+|+.+++..+-. ..+-++ +.++++.|+.+-.-|+..+.+-.++
T Consensus 761 ~~~~~~~~v~~l~~hp~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~ 840 (875)
T PRK14015 761 PAPDTLERVRALMQHPAFDLKNPNRVRSLIGAFAAANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRY 840 (875)
T ss_pred CCcCHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhhcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcc
Confidence 22333444444443333332 556678999998644332 333443 7888999999988999999998888
Q ss_pred hHHHHH
Q 040371 258 DTAENV 263 (410)
Q Consensus 258 ~~a~~~ 263 (410)
+..++.
T Consensus 841 ~~~r~~ 846 (875)
T PRK14015 841 DPKRQA 846 (875)
T ss_pred CHHHHH
Confidence 876653
No 450
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=24.99 E-value=1.8e+02 Score=23.24 Aligned_cols=65 Identities=6% Similarity=-0.013 Sum_probs=46.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH
Q 040371 28 FFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQ 93 (410)
Q Consensus 28 l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 93 (410)
+.+.+.+.|++++.-- ..++..+...++.-.|.++|+.+.+.+...+..|-..-++.+...|-+.
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 3445556777766443 4567777777777889999999999887776666556668888888643
No 451
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=24.15 E-value=2.3e+02 Score=22.50 Aligned_cols=19 Identities=5% Similarity=-0.043 Sum_probs=10.5
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 040371 186 DLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 186 ~~~~~~g~~~~A~~~~~~m 204 (410)
-++.+.+++++++++.+.+
T Consensus 79 vg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 79 VGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 3455556666665555544
No 452
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=23.84 E-value=5.5e+02 Score=23.24 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=12.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 040371 113 MISGVAIHGLAADASAIFTKMEM 135 (410)
Q Consensus 113 li~~~~~~g~~~~A~~l~~~m~~ 135 (410)
.+......|++..|+++..+...
T Consensus 133 ~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 133 RLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 44445555666666666555543
No 453
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=23.75 E-value=4e+02 Score=25.45 Aligned_cols=22 Identities=9% Similarity=0.212 Sum_probs=15.6
Q ss_pred CCCCHHHHHHHHHHHHccCCHH
Q 040371 138 VLPDSITFLGLLTACSHCGLVE 159 (410)
Q Consensus 138 ~~p~~~t~~~ll~a~~~~g~~~ 159 (410)
-.||...+.++...|+--+-+.
T Consensus 233 TaPnVlIwsAv~aS~a~p~~~~ 254 (391)
T cd07229 233 TAPNVLIWSAALASNASSAALY 254 (391)
T ss_pred CCCCchHHHHHHHHcCCccccC
Confidence 5788888888777777665543
No 454
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=23.55 E-value=6e+02 Score=23.61 Aligned_cols=156 Identities=12% Similarity=0.059 Sum_probs=74.0
Q ss_pred CHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 040371 91 KIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS 170 (410)
Q Consensus 91 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 170 (410)
+.+....+++.+.+.+...|...+.. ...++.|...++++..+ +...+++-.+..+...+
T Consensus 37 ~~~~~e~l~~~Ird~~Map~Ye~lce------------------~~~i~~D~~~l~~m~~~--neeki~eld~~iedaee 96 (393)
T KOG0687|consen 37 KAAAREKLLAAIRDEDMAPLYEYLCE------------------SLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEE 96 (393)
T ss_pred CHHHHHHHHHHHHhcccchHHHHHHh------------------hcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHH
Confidence 44445555666665555544443332 22334444444444332 12223333333333333
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHH-----HhcCchhHHHHHHHhhcc
Q 040371 171 RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-------TMEPDVVVWRALLSAC-----RTFKRLELGEVAIVNISR 238 (410)
Q Consensus 171 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~li~~~-----~~~g~~~~a~~~~~~~~~ 238 (410)
..|-.--...+-....-|++-|+.+.|++.+++. |.+-|++-+..=+.-+ ......+.|..++.+...
T Consensus 97 nlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgD 176 (393)
T KOG0687|consen 97 NLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGD 176 (393)
T ss_pred hcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 2222222344555666788888888888877654 4555555443333221 122334555555444332
Q ss_pred C----CCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040371 239 L----MGGDYVLLSNMYCYLKRWDTAENVREIMK 268 (410)
Q Consensus 239 ~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 268 (410)
. ...+|..+-. ....++.+|..+|-+..
T Consensus 177 WeRrNRlKvY~Gly~--msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 177 WERRNRLKVYQGLYC--MSVRNFKEAADLFLDSV 208 (393)
T ss_pred hhhhhhHHHHHHHHH--HHHHhHHHHHHHHHHHc
Confidence 1 1234443322 23456778887776543
No 455
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=23.14 E-value=1.8e+02 Score=21.66 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=8.6
Q ss_pred HHHHHHcCChHHHHHHHHHH
Q 040371 114 ISGVAIHGLAADASAIFTKM 133 (410)
Q Consensus 114 i~~~~~~g~~~~A~~l~~~m 133 (410)
+..|...|+.++|..-++++
T Consensus 9 l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHh
Confidence 33444444444444444443
No 456
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=22.85 E-value=75 Score=23.21 Aligned_cols=34 Identities=9% Similarity=0.028 Sum_probs=27.1
Q ss_pred cccchhhHHHHHhhhhCceEEEecCCccccccCCc
Q 040371 369 ICHDCHSWIKMISRLLRRVIIVRDRIRFHRFEGGL 403 (410)
Q Consensus 369 ~c~~~~~~~~~~~~~~~~~i~~~~~~~~h~~~~g~ 403 (410)
-|.+=.+|..+-..+....|+-....+ |+|+||.
T Consensus 52 ~~~tR~eAv~~gq~Ll~~gii~HV~~~-h~F~D~~ 85 (93)
T cd04440 52 DCRTREEAVILGVGLCNNGFMHHVLEK-SEFKDEP 85 (93)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEecCCC-cCcCCcC
Confidence 345557899999999999998887655 7999985
No 457
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=22.69 E-value=6.1e+02 Score=23.36 Aligned_cols=169 Identities=17% Similarity=0.122 Sum_probs=82.8
Q ss_pred HCCCCCCHHHHHHHHH-HHHhhC-CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCChhhHH
Q 040371 34 SSKVEPDKFTFASVIY-GCARLG-ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWN 111 (410)
Q Consensus 34 ~~g~~pd~~t~~~ll~-a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~ 111 (410)
..| .|+...++++++ .+.+.| .+.-+..+|...+... ..+.++..+-|.+.-+.-.++|--- ++.+.++.
T Consensus 159 ~nG-t~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek------~i~~lis~Lrkg~md~rLmeffPpn-krs~E~Fa 230 (412)
T KOG2297|consen 159 SNG-TLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEK------DINDLISSLRKGKMDDRLMEFFPPN-KRSVEHFA 230 (412)
T ss_pred hCC-CCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhc------cHHHHHHHHHhcChHhHHHHhcCCc-chhHHHHH
Confidence 345 455666666664 333444 3455667776554322 2456666666555444444444211 12222221
Q ss_pred H--------HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-HhhhhcCCCCCh----
Q 040371 112 A--------MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFD-HMRSRYSIQPQL---- 178 (410)
Q Consensus 112 ~--------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~-~m~~~~~~~~~~---- 178 (410)
- =+.-|.+......|.+-++.-+. .-.+....+++...... +|. +.++ |+.
T Consensus 231 k~Ft~agL~elvey~~~q~~~~a~kElq~~L~--------------~q~s~e~p~~evi~~VKee~k-~~nl-Pe~eVi~ 294 (412)
T KOG2297|consen 231 KYFTDAGLKELVEYHRNQQSEGARKELQKELQ--------------EQVSEEDPVKEVILYVKEEMK-RNNL-PETEVIG 294 (412)
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhccCCCHHHHHHHHHHHHH-hcCC-CCceEEe
Confidence 1 12334444444444444333222 22233334444444444 344 3243 443
Q ss_pred hHHHHHHHHHHhcCCHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHH
Q 040371 179 EHYGAMVDLLGRAGHIE-EAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA 232 (410)
Q Consensus 179 ~~~~~li~~~~~~g~~~-~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~ 232 (410)
..|++++++---+.+-+ -|.+.++ ...+|..|+.+++..|+.+...-+
T Consensus 295 ivWs~iMsaveWnKkeelva~qalr------hlK~yaPLL~af~s~g~sEL~Ll~ 343 (412)
T KOG2297|consen 295 IVWSGIMSAVEWNKKEELVAEQALR------HLKQYAPLLAAFCSQGQSELELLL 343 (412)
T ss_pred eeHhhhhHHHhhchHHHHHHHHHHH------HHHhhhHHHHHHhcCChHHHHHHH
Confidence 35777766543332211 1222333 455788899999999998887766
No 458
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=22.40 E-value=9e+02 Score=25.24 Aligned_cols=32 Identities=19% Similarity=0.105 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKMEMFNVLPD 141 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 141 (410)
....|+.++. .++...++.++++|...|+.+.
T Consensus 248 ~If~LldAL~-~~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 248 YLYELLTGII-NQDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCHH
Confidence 3444555544 4788888888888888877554
No 459
>PF14044 NETI: NETI protein
Probab=22.33 E-value=83 Score=20.44 Aligned_cols=13 Identities=38% Similarity=0.912 Sum_probs=10.6
Q ss_pred HHHHHHCCcccCC
Q 040371 311 IQRTKSEGFLPAT 323 (410)
Q Consensus 311 ~~~m~~~g~~pd~ 323 (410)
+.+|++.||.|-.
T Consensus 14 L~RM~~eGY~Pvr 26 (57)
T PF14044_consen 14 LARMKKEGYMPVR 26 (57)
T ss_pred HHHHHHcCCCcee
Confidence 3499999999955
No 460
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=22.19 E-value=5.9e+02 Score=23.02 Aligned_cols=75 Identities=23% Similarity=-0.008 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhhhcCC---CCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHH
Q 040371 158 VEEGRKYFDHMRSRYSI---QPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVA 232 (410)
Q Consensus 158 ~~~a~~~~~~m~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~ 232 (410)
.+.|.+.|........- ..++.....+.....+.|..++-..+++.....++...-..++.+.+...+.+...++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHH
Confidence 56777888887753111 3455666677777777777666555555554455777788888888888887777776
No 461
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=22.11 E-value=5.4e+02 Score=22.50 Aligned_cols=58 Identities=9% Similarity=0.177 Sum_probs=38.3
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hhCCHHHHHHHHHHHHH
Q 040371 12 MIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCA-RLGALNHAYWVHNLIIE 69 (410)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~-~~~~~~~a~~~~~~~~~ 69 (410)
++..+-+.|++++++..++++...+...+..--+.+-.+|- ..|....+.+++..+..
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 56677889999999999999998876667666666666663 23444555555555443
No 462
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=22.10 E-value=3.1e+02 Score=19.75 Aligned_cols=44 Identities=7% Similarity=-0.037 Sum_probs=37.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHc
Q 040371 27 RFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEK 70 (410)
Q Consensus 27 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 70 (410)
++|+-....|+..|...|..++....-.-..+...++++.|...
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 88988888999999999999999888777888888888877543
No 463
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=21.69 E-value=5.1e+02 Score=25.23 Aligned_cols=74 Identities=9% Similarity=0.056 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 040371 111 NAMISGVAIHGLAADASAIFTKMEMFNVL--PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLL 188 (410)
Q Consensus 111 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~ 188 (410)
..|+.-|...|+..+|....+++ |++ -..+.+-+++-+.-+.|+-...+.+++..-+. ...|-+.|-.+|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeL---gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s-----glIT~nQMtkGf 584 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKEL---GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS-----GLITTNQMTKGF 584 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHh---CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----CceeHHHhhhhh
Confidence 34677788888888888887765 332 24566778888888888877666666665543 455667777777
Q ss_pred HhcC
Q 040371 189 GRAG 192 (410)
Q Consensus 189 ~~~g 192 (410)
.|..
T Consensus 585 ~RV~ 588 (645)
T KOG0403|consen 585 ERVY 588 (645)
T ss_pred hhhh
Confidence 7753
No 464
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=21.48 E-value=6.5e+02 Score=23.25 Aligned_cols=77 Identities=12% Similarity=0.244 Sum_probs=43.7
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcc--cCC-h-------------hhHHH-HHHHHHHcCChH
Q 040371 62 WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ--RND-V-------------SVWNA-MISGVAIHGLAA 124 (410)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~~-~-------------~~~~~-li~~~~~~g~~~ 124 (410)
.+-....+.|+..+..+...|+..+. |++..+..-++++. .+| . .+.|. =+.-+...|+..
T Consensus 148 ~i~~~~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~ 225 (334)
T COG1466 148 WIKKRAKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVK 225 (334)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHH
Confidence 34455566677777777777776665 66666666555543 111 1 11111 112234467777
Q ss_pred HHHHHHHHHHHCCCCC
Q 040371 125 DASAIFTKMEMFNVLP 140 (410)
Q Consensus 125 ~A~~l~~~m~~~g~~p 140 (410)
+|..+++++...|..|
T Consensus 226 ~a~~~l~~L~~~ge~p 241 (334)
T COG1466 226 KALRLLRDLLLEGEEP 241 (334)
T ss_pred HHHHHHHHHHHcCCcH
Confidence 7777777777766554
No 465
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=21.13 E-value=3.9e+02 Score=20.60 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHH
Q 040371 125 DASAIFTKMEMFNVLPD-SITFLGLLTACSHCGLVEEGRKYFDH 167 (410)
Q Consensus 125 ~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 167 (410)
++.++|..|...|+.-. ..-|..-...+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777777666543 33455555666667777777777654
No 466
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=20.94 E-value=5.1e+02 Score=24.03 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=11.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHH
Q 040371 112 AMISGVAIHGLAADASAIFTKM 133 (410)
Q Consensus 112 ~li~~~~~~g~~~~A~~l~~~m 133 (410)
.+++.|.++|.+++|+++....
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~ 132 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHV 132 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHH
Confidence 4455555555555555555443
No 467
>PRK02287 hypothetical protein; Provisional
Probab=20.81 E-value=2.5e+02 Score=23.18 Aligned_cols=58 Identities=12% Similarity=-0.052 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHhhc--cCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040371 211 VVWRALLSACRTFKRLELGEVAIVNIS--RLMGGDYVLLSNMYCYLKRWDTAENVREIMK 268 (410)
Q Consensus 211 ~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 268 (410)
.+..++..++...|..+.|.+++.... ..-...-..+++.|+++.+-++..++-++..
T Consensus 108 s~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~ 167 (171)
T PRK02287 108 SSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYL 167 (171)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 455666667777777777777633221 1111122347788888888777777666544
No 468
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=20.76 E-value=3.4e+02 Score=19.63 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=5.9
Q ss_pred CCHHHHHHHHHhCC
Q 040371 192 GHIEEAYGLITSMT 205 (410)
Q Consensus 192 g~~~~A~~~~~~m~ 205 (410)
|+.+.|.+++..++
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 34444444444443
No 469
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=20.61 E-value=7.5e+02 Score=23.64 Aligned_cols=55 Identities=20% Similarity=0.232 Sum_probs=34.5
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC------C-------------CCCCHHHHHHHHHHHHhcCchh
Q 040371 173 SIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM------T-------------MEPDVVVWRALLSACRTFKRLE 227 (410)
Q Consensus 173 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~-------------~~p~~~~~~~li~~~~~~g~~~ 227 (410)
|.-.|...+...++.+...-.++||.+--.+. + -.||+..|.++..+|+.-+-+.
T Consensus 181 G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~a~p~~~~ 254 (391)
T cd07229 181 GYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASNASSAALY 254 (391)
T ss_pred CCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHcCCccccC
Confidence 44455555555555555555567766443332 0 2489999999999888777655
No 470
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=20.38 E-value=1.8e+02 Score=20.69 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=13.9
Q ss_pred CCHHHHHHHHHhcccCChhhHHHHHHHHHHcCC
Q 040371 90 GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122 (410)
Q Consensus 90 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 122 (410)
|+.+.|..+++.+. +...-+..++.++-..|.
T Consensus 46 G~~~aa~~Ll~~L~-r~~~Wf~~Fl~AL~~~~~ 77 (84)
T cd08789 46 GNIKAAWTLLDTLV-RRDNWLEPFLDALRECGL 77 (84)
T ss_pred ChHHHHHHHHHHHh-ccCChHHHHHHHHHHcCC
Confidence 44444444444444 333344444444444443
Done!