Query 040371
Match_columns 410
No_of_seqs 495 out of 3751
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 12:21:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040371.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040371hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 5.4E-32 1.8E-36 262.8 23.0 185 6-191 26-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 3.3E-31 1.1E-35 257.2 22.7 201 23-224 7-224 (501)
3 2xpi_A Anaphase-promoting comp 100.0 4E-27 1.4E-31 234.9 24.4 309 2-323 80-514 (597)
4 2xpi_A Anaphase-promoting comp 99.9 4.8E-25 1.6E-29 219.9 31.4 262 4-270 303-579 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 9.1E-20 3.1E-24 171.9 25.8 291 5-310 66-365 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.8 2.3E-18 7.9E-23 162.3 30.5 259 5-270 100-368 (388)
7 2y4t_A DNAJ homolog subfamily 99.8 5.1E-19 1.7E-23 169.9 25.5 292 5-310 25-355 (450)
8 2y4t_A DNAJ homolog subfamily 99.8 5.7E-18 1.9E-22 162.5 29.9 261 4-270 58-358 (450)
9 3spa_A Mtrpol, DNA-directed RN 99.8 1.2E-19 4.3E-24 181.9 10.0 131 73-204 124-262 (1134)
10 3hym_B Cell division cycle pro 99.8 1E-16 3.4E-21 146.9 28.0 261 5-270 21-299 (330)
11 1fch_A Peroxisomal targeting s 99.8 8.1E-17 2.8E-21 150.1 26.1 257 5-265 63-354 (368)
12 4eqf_A PEX5-related protein; a 99.8 4.9E-17 1.7E-21 151.8 23.3 258 5-266 64-352 (365)
13 3spa_A Mtrpol, DNA-directed RN 99.8 3.2E-19 1.1E-23 178.9 7.8 146 41-192 127-286 (1134)
14 2gw1_A Mitochondrial precursor 99.8 8.5E-17 2.9E-21 156.7 21.9 294 5-313 5-401 (514)
15 3ieg_A DNAJ homolog subfamily 99.7 3.5E-15 1.2E-19 138.0 30.8 261 6-270 37-335 (359)
16 3cv0_A Peroxisome targeting si 99.7 2.6E-16 8.7E-21 143.9 22.6 257 5-266 20-311 (327)
17 3ieg_A DNAJ homolog subfamily 99.7 8.9E-15 3E-19 135.2 32.2 291 5-309 2-331 (359)
18 2gw1_A Mitochondrial precursor 99.7 1.2E-15 4.1E-20 148.6 27.1 297 3-311 36-442 (514)
19 1b89_A Protein (clathrin heavy 99.7 2.8E-17 9.4E-22 153.4 10.0 263 6-306 32-304 (449)
20 3hym_B Cell division cycle pro 99.7 1.4E-14 4.9E-19 132.4 27.4 250 5-257 55-321 (330)
21 1fch_A Peroxisomal targeting s 99.7 2.2E-15 7.5E-20 140.4 22.2 254 15-270 34-314 (368)
22 1b89_A Protein (clathrin heavy 99.7 2E-17 7E-22 154.3 8.0 218 18-268 15-234 (449)
23 4eqf_A PEX5-related protein; a 99.7 4.2E-15 1.4E-19 138.6 23.2 228 40-270 64-310 (365)
24 3fp2_A TPR repeat-containing p 99.7 2.1E-14 7.1E-19 140.8 28.8 259 7-271 26-408 (537)
25 3mkr_A Coatomer subunit epsilo 99.7 6.3E-15 2.2E-19 133.3 21.9 243 13-270 6-264 (291)
26 3mkr_A Coatomer subunit epsilo 99.7 2.2E-14 7.6E-19 129.7 24.3 241 8-262 36-286 (291)
27 2pl2_A Hypothetical conserved 99.6 1.5E-13 5E-18 118.6 21.5 195 4-204 3-211 (217)
28 3uq3_A Heat shock protein STI1 99.6 1.3E-13 4.4E-18 121.3 21.0 216 6-232 5-229 (258)
29 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.6E-13 5.6E-18 122.1 21.7 242 17-264 16-269 (275)
30 3fp2_A TPR repeat-containing p 99.6 5.4E-13 1.8E-17 130.7 27.0 245 20-271 216-492 (537)
31 3uq3_A Heat shock protein STI1 99.6 2.2E-13 7.6E-18 119.8 21.5 217 41-270 5-236 (258)
32 2ho1_A Type 4 fimbrial biogene 99.6 6.8E-13 2.3E-17 116.6 24.3 194 6-204 37-235 (252)
33 3cv0_A Peroxisome targeting si 99.6 4E-13 1.4E-17 122.5 23.2 226 40-270 20-269 (327)
34 2vq2_A PILW, putative fimbrial 99.6 6.3E-13 2.2E-17 114.3 23.1 208 5-216 7-221 (225)
35 2q7f_A YRRB protein; TPR, prot 99.5 3.7E-13 1.3E-17 117.4 18.7 196 4-204 21-219 (243)
36 3u4t_A TPR repeat-containing p 99.5 3.5E-12 1.2E-16 113.3 23.0 232 8-244 5-258 (272)
37 2pl2_A Hypothetical conserved 99.5 1.1E-12 3.6E-17 113.2 18.3 194 38-266 2-210 (217)
38 2ho1_A Type 4 fimbrial biogene 99.5 8E-12 2.7E-16 109.7 23.6 189 41-232 37-231 (252)
39 3sf4_A G-protein-signaling mod 99.5 2.8E-12 9.4E-17 120.7 21.8 266 3-269 6-335 (406)
40 2vq2_A PILW, putative fimbrial 99.5 9.8E-12 3.3E-16 106.7 23.5 190 40-232 7-204 (225)
41 4a1s_A PINS, partner of inscut 99.5 1.8E-12 6.2E-17 122.5 20.4 263 7-270 49-372 (411)
42 2h6f_A Protein farnesyltransfe 99.5 5E-12 1.7E-16 118.4 22.8 241 6-252 97-364 (382)
43 1ouv_A Conserved hypothetical 99.5 5.8E-11 2E-15 105.8 28.4 215 4-232 4-244 (273)
44 3ro2_A PINS homolog, G-protein 99.5 4.1E-12 1.4E-16 115.8 20.6 264 6-270 5-332 (338)
45 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.4E-12 1.8E-16 112.1 20.2 220 5-233 42-269 (275)
46 2q7f_A YRRB protein; TPR, prot 99.5 3.5E-12 1.2E-16 111.2 17.9 202 40-245 22-231 (243)
47 1ouv_A Conserved hypothetical 99.5 7.8E-11 2.7E-15 104.9 27.1 223 40-272 5-253 (273)
48 3u4t_A TPR repeat-containing p 99.4 2.8E-11 9.7E-16 107.4 22.8 225 42-270 4-250 (272)
49 2h6f_A Protein farnesyltransfe 99.4 1.8E-11 6.2E-16 114.5 20.1 226 41-270 97-348 (382)
50 2ond_A Cleavage stimulation fa 99.4 2.7E-10 9.2E-15 103.6 26.7 232 6-241 8-275 (308)
51 2xm6_A Protein corresponding t 99.4 2.1E-09 7.2E-14 104.3 34.3 254 5-271 38-326 (490)
52 4g1t_A Interferon-induced prot 99.4 4E-10 1.4E-14 108.5 28.3 264 6-272 51-365 (472)
53 3nf1_A KLC 1, kinesin light ch 99.4 5.4E-12 1.9E-16 114.1 12.9 165 6-170 27-223 (311)
54 2xm6_A Protein corresponding t 99.4 2.9E-09 1E-13 103.3 33.0 254 5-271 74-361 (490)
55 3nf1_A KLC 1, kinesin light ch 99.3 2.7E-11 9.3E-16 109.4 16.6 192 42-233 28-301 (311)
56 3vtx_A MAMA; tetratricopeptide 99.3 3.4E-10 1.2E-14 94.3 21.9 163 5-170 4-169 (184)
57 2ooe_A Cleavage stimulation fa 99.3 5.7E-10 1.9E-14 109.4 25.7 144 155-309 292-450 (530)
58 3vtx_A MAMA; tetratricopeptide 99.3 3.7E-10 1.3E-14 94.1 20.5 167 40-210 4-174 (184)
59 4abn_A Tetratricopeptide repea 99.3 2.9E-11 1E-15 116.9 15.5 205 57-266 84-317 (474)
60 2ond_A Cleavage stimulation fa 99.3 9.1E-10 3.1E-14 100.0 23.1 197 5-204 49-267 (308)
61 1hz4_A MALT regulatory protein 99.3 9.3E-09 3.2E-13 95.7 30.6 261 9-269 17-321 (373)
62 4abn_A Tetratricopeptide repea 99.3 1.8E-10 6.3E-15 111.3 18.4 209 20-234 82-316 (474)
63 1xi4_A Clathrin heavy chain; a 99.3 2.1E-09 7.2E-14 112.0 26.7 227 11-267 1054-1306(1630)
64 3as5_A MAMA; tetratricopeptide 99.3 6.5E-10 2.2E-14 91.9 19.1 161 7-170 9-172 (186)
65 1xi4_A Clathrin heavy chain; a 99.2 2.8E-09 9.5E-14 111.1 25.8 232 5-265 1104-1340(1630)
66 4g1t_A Interferon-induced prot 99.2 1.3E-09 4.6E-14 104.8 21.9 259 7-272 137-461 (472)
67 3ulq_A Response regulator aspa 99.2 1.1E-09 3.9E-14 102.5 19.8 223 47-269 109-367 (383)
68 3sf4_A G-protein-signaling mod 99.2 1.5E-09 5.3E-14 101.7 20.3 277 38-322 6-345 (406)
69 3ulq_A Response regulator aspa 99.2 2.7E-09 9.2E-14 99.9 20.6 221 12-232 109-361 (383)
70 4a1s_A PINS, partner of inscut 99.2 1.1E-09 3.6E-14 103.4 17.8 227 42-269 49-331 (411)
71 3ro2_A PINS homolog, G-protein 99.2 1E-09 3.4E-14 99.8 17.0 227 42-269 6-291 (338)
72 3as5_A MAMA; tetratricopeptide 99.2 3.1E-09 1.1E-13 87.7 18.5 156 44-203 11-169 (186)
73 4gyw_A UDP-N-acetylglucosamine 99.1 2.2E-09 7.6E-14 108.4 20.0 161 5-170 8-173 (723)
74 3edt_B KLC 2, kinesin light ch 99.1 4.4E-10 1.5E-14 99.7 13.4 153 18-170 13-197 (283)
75 1qqe_A Vesicular transport pro 99.1 7.9E-09 2.7E-13 93.1 20.8 93 77-169 78-185 (292)
76 2ooe_A Cleavage stimulation fa 99.1 1.6E-08 5.6E-13 99.0 24.8 221 7-232 231-485 (530)
77 4i17_A Hypothetical protein; T 99.1 1.9E-08 6.6E-13 86.6 22.3 201 4-216 5-219 (228)
78 3edt_B KLC 2, kinesin light ch 99.1 2E-09 7E-14 95.4 15.8 197 6-204 43-278 (283)
79 4gyw_A UDP-N-acetylglucosamine 99.1 2.1E-09 7.2E-14 108.5 17.4 154 74-232 7-167 (723)
80 1qqe_A Vesicular transport pro 99.1 1.6E-08 5.5E-13 91.0 21.0 198 8-208 39-271 (292)
81 2fo7_A Synthetic consensus TPR 99.1 9.3E-09 3.2E-13 79.9 17.0 127 7-135 2-131 (136)
82 4i17_A Hypothetical protein; T 99.1 1.7E-08 5.8E-13 87.0 19.3 200 39-250 5-223 (228)
83 3q15_A PSP28, response regulat 99.0 3.5E-08 1.2E-12 92.2 22.1 225 14-268 109-363 (378)
84 3q15_A PSP28, response regulat 99.0 3.1E-08 1.1E-12 92.5 20.6 156 49-204 109-287 (378)
85 3mv2_B Coatomer subunit epsilo 99.0 2.6E-08 9E-13 89.0 16.8 174 60-241 85-287 (310)
86 1hz4_A MALT regulatory protein 99.0 3.7E-07 1.3E-11 84.8 25.3 267 46-319 19-328 (373)
87 3qky_A Outer membrane assembly 98.9 1.1E-07 3.7E-12 83.8 19.2 99 5-104 14-125 (261)
88 3urz_A Uncharacterized protein 98.9 1.1E-07 3.8E-12 80.9 18.3 93 7-102 5-114 (208)
89 2pzi_A Probable serine/threoni 98.9 7.9E-08 2.7E-12 97.1 20.2 165 52-222 402-580 (681)
90 2fo7_A Synthetic consensus TPR 98.9 1.4E-07 4.7E-12 73.0 17.0 124 44-169 4-130 (136)
91 3e4b_A ALGK; tetratricopeptide 98.9 1.8E-07 6E-12 89.7 20.6 217 78-308 143-382 (452)
92 3mv2_B Coatomer subunit epsilo 98.9 4.6E-07 1.6E-11 81.0 21.4 237 13-271 20-283 (310)
93 3qou_A Protein YBBN; thioredox 98.9 1.9E-07 6.6E-12 83.7 18.9 164 38-203 114-280 (287)
94 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.7E-07 1.3E-11 77.4 17.3 128 4-136 4-150 (213)
95 3urz_A Uncharacterized protein 98.8 6.2E-07 2.1E-11 76.1 18.2 168 43-216 6-196 (208)
96 2pzi_A Probable serine/threoni 98.8 3.8E-07 1.3E-11 92.1 19.6 181 17-204 402-602 (681)
97 3e4b_A ALGK; tetratricopeptide 98.8 1.1E-06 3.9E-11 84.1 21.7 188 75-272 175-389 (452)
98 3qky_A Outer membrane assembly 98.7 7.5E-07 2.5E-11 78.4 18.7 96 40-136 14-126 (261)
99 3rjv_A Putative SEL1 repeat pr 98.7 1.3E-06 4.5E-11 74.4 18.6 171 24-204 4-194 (212)
100 2yhc_A BAMD, UPF0169 lipoprote 98.7 1.5E-06 5.2E-11 74.7 19.0 182 5-204 3-210 (225)
101 2r5s_A Uncharacterized protein 98.7 6.4E-07 2.2E-11 73.8 15.6 151 47-203 12-169 (176)
102 2ifu_A Gamma-SNAP; membrane fu 98.7 5.8E-07 2E-11 81.3 16.3 16 19-34 4-19 (307)
103 4e6h_A MRNA 3'-END-processing 98.7 3E-06 1E-10 84.7 22.6 229 7-240 303-574 (679)
104 3rjv_A Putative SEL1 repeat pr 98.7 3.6E-06 1.2E-10 71.6 20.2 159 4-171 16-197 (212)
105 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.4E-06 4.7E-11 73.8 17.5 131 78-209 8-153 (213)
106 2vsy_A XCC0866; transferase, g 98.7 1E-06 3.6E-11 86.9 18.9 150 19-171 2-157 (568)
107 3qou_A Protein YBBN; thioredox 98.7 8.8E-07 3E-11 79.3 16.6 169 94-267 104-281 (287)
108 2ifu_A Gamma-SNAP; membrane fu 98.7 1E-06 3.5E-11 79.7 17.0 182 49-232 44-254 (307)
109 2yhc_A BAMD, UPF0169 lipoprote 98.6 2E-06 6.8E-11 73.9 17.5 178 75-272 3-215 (225)
110 2r5s_A Uncharacterized protein 98.6 3.4E-07 1.1E-11 75.5 11.6 161 7-170 7-172 (176)
111 1na0_A Designed protein CTPR3; 98.6 1.9E-06 6.3E-11 65.6 15.2 96 6-103 9-104 (125)
112 4ga2_A E3 SUMO-protein ligase 98.6 1.1E-07 3.8E-12 76.3 7.1 113 82-199 3-120 (150)
113 2qfc_A PLCR protein; TPR, HTH, 98.6 4.4E-06 1.5E-10 74.9 18.4 164 41-204 75-263 (293)
114 1a17_A Serine/threonine protei 98.6 3.5E-06 1.2E-10 67.9 16.2 125 7-133 14-143 (166)
115 2vsy_A XCC0866; transferase, g 98.6 1.4E-06 4.9E-11 85.9 16.3 147 54-204 2-154 (568)
116 4ga2_A E3 SUMO-protein ligase 98.6 3.4E-07 1.2E-11 73.4 9.8 118 15-135 6-128 (150)
117 4f3v_A ESX-1 secretion system 98.5 2.4E-06 8.3E-11 75.3 15.4 198 15-216 16-247 (282)
118 3dra_A Protein farnesyltransfe 98.5 0.00011 3.8E-09 66.0 25.7 180 18-203 45-246 (306)
119 3dra_A Protein farnesyltransfe 98.5 3.7E-05 1.3E-09 69.1 22.4 210 56-269 48-286 (306)
120 2lni_A Stress-induced-phosphop 98.5 4.3E-06 1.5E-10 64.5 14.2 115 5-121 15-132 (133)
121 3gw4_A Uncharacterized protein 98.5 2.6E-06 9E-11 71.3 13.7 116 17-133 3-133 (203)
122 2c2l_A CHIP, carboxy terminus 98.5 2.2E-06 7.5E-11 76.5 13.7 97 5-103 3-99 (281)
123 3u3w_A Transcriptional activat 98.5 9.1E-06 3.1E-10 72.8 17.9 163 42-204 76-263 (293)
124 2vyi_A SGTA protein; chaperone 98.4 7.7E-06 2.6E-10 62.6 14.7 115 6-122 12-129 (131)
125 3gw4_A Uncharacterized protein 98.4 6.7E-06 2.3E-10 68.7 15.4 152 52-204 3-173 (203)
126 3u3w_A Transcriptional activat 98.4 5.6E-05 1.9E-09 67.5 21.7 120 149-268 122-264 (293)
127 1a17_A Serine/threonine protei 98.4 8.1E-06 2.8E-10 65.7 14.2 89 80-169 17-108 (166)
128 2qfc_A PLCR protein; TPR, HTH, 98.4 2E-05 6.8E-10 70.5 18.1 26 242-267 237-263 (293)
129 2e2e_A Formate-dependent nitri 98.4 3.5E-06 1.2E-10 69.1 12.1 118 17-136 21-144 (177)
130 1na0_A Designed protein CTPR3; 98.4 1.5E-05 5.2E-10 60.3 14.9 93 42-135 10-105 (125)
131 3gyz_A Chaperone protein IPGC; 98.4 4.7E-06 1.6E-10 66.8 12.2 123 9-143 12-138 (151)
132 4gco_A Protein STI-1; structur 98.4 9.7E-06 3.3E-10 62.7 13.6 91 44-135 16-109 (126)
133 4gco_A Protein STI-1; structur 98.4 1.3E-05 4.5E-10 61.9 14.3 105 7-113 14-121 (126)
134 1p5q_A FKBP52, FK506-binding p 98.4 1E-05 3.5E-10 74.2 15.6 125 43-169 149-292 (336)
135 4e6h_A MRNA 3'-END-processing 98.4 2.3E-05 7.9E-10 78.3 19.2 213 5-220 342-584 (679)
136 3gyz_A Chaperone protein IPGC; 98.3 1.2E-05 4E-10 64.4 12.8 100 75-179 35-138 (151)
137 2c2l_A CHIP, carboxy terminus 98.3 3.2E-06 1.1E-10 75.4 10.4 95 40-135 3-100 (281)
138 2vyi_A SGTA protein; chaperone 98.3 2E-05 6.9E-10 60.2 13.3 114 77-193 13-129 (131)
139 2vgx_A Chaperone SYCD; alterna 98.3 1E-05 3.4E-10 64.6 11.4 91 78-169 23-116 (148)
140 2vgx_A Chaperone SYCD; alterna 98.2 1.6E-05 5.5E-10 63.3 12.5 106 28-136 9-118 (148)
141 1elw_A TPR1-domain of HOP; HOP 98.2 4.7E-05 1.6E-09 56.9 14.6 98 5-104 3-100 (118)
142 2e2e_A Formate-dependent nitri 98.2 1.2E-05 4.2E-10 65.8 12.0 116 53-170 22-143 (177)
143 3q49_B STIP1 homology and U bo 98.2 3.1E-05 1.1E-09 60.2 13.8 96 5-102 8-103 (137)
144 2kck_A TPR repeat; tetratricop 98.2 1.4E-05 4.7E-10 59.4 11.0 97 5-103 5-104 (112)
145 2lni_A Stress-induced-phosphop 98.2 2.7E-05 9.4E-10 59.8 12.8 92 77-169 17-111 (133)
146 3q7a_A Farnesyltransferase alp 98.2 0.0012 4.1E-08 60.1 25.3 180 9-193 57-257 (349)
147 2xcb_A PCRH, regulatory protei 98.2 1.8E-05 6E-10 62.4 11.8 92 43-135 20-114 (142)
148 1p5q_A FKBP52, FK506-binding p 98.2 4.1E-05 1.4E-09 70.1 15.6 127 75-204 146-291 (336)
149 3upv_A Heat shock protein STI1 98.2 3.8E-05 1.3E-09 58.9 13.0 94 7-102 5-98 (126)
150 3upv_A Heat shock protein STI1 98.2 5.4E-05 1.8E-09 58.0 13.7 93 42-135 5-100 (126)
151 4gcn_A Protein STI-1; structur 98.2 4.4E-05 1.5E-09 58.9 13.2 26 110-135 86-111 (127)
152 4b4t_Q 26S proteasome regulato 98.2 5.5E-05 1.9E-09 71.4 16.5 192 13-204 11-242 (434)
153 2dba_A Smooth muscle cell asso 98.2 8.1E-05 2.8E-09 58.3 14.9 95 5-102 27-125 (148)
154 1elr_A TPR2A-domain of HOP; HO 98.1 3.7E-05 1.3E-09 58.7 12.4 95 7-102 5-105 (131)
155 2fbn_A 70 kDa peptidylprolyl i 98.1 4.7E-05 1.6E-09 63.7 13.9 127 41-169 38-184 (198)
156 3sz7_A HSC70 cochaperone (SGT) 98.1 3.8E-05 1.3E-09 62.0 12.8 96 6-103 11-106 (164)
157 1hxi_A PEX5, peroxisome target 98.1 1.9E-05 6.4E-10 60.5 9.9 93 9-103 20-112 (121)
158 3ro3_A PINS homolog, G-protein 98.1 2.4E-05 8.2E-10 62.2 11.0 95 7-101 10-114 (164)
159 3q7a_A Farnesyltransferase alp 98.1 0.0005 1.7E-08 62.6 20.6 215 52-270 65-331 (349)
160 3q49_B STIP1 homology and U bo 98.1 0.00011 3.9E-09 56.8 13.9 95 40-135 8-105 (137)
161 1elw_A TPR1-domain of HOP; HOP 98.1 0.00024 8.2E-09 52.9 15.2 92 43-135 6-100 (118)
162 3sz7_A HSC70 cochaperone (SGT) 98.1 0.00011 3.6E-09 59.3 14.0 92 43-135 13-107 (164)
163 4gcn_A Protein STI-1; structur 98.1 8E-05 2.7E-09 57.4 12.6 97 6-103 8-110 (127)
164 2xcb_A PCRH, regulatory protei 98.1 7E-05 2.4E-09 58.9 12.4 90 79-169 21-113 (142)
165 1elr_A TPR2A-domain of HOP; HO 98.0 7.2E-05 2.5E-09 57.1 12.2 93 42-135 5-107 (131)
166 4f3v_A ESX-1 secretion system 98.0 0.00014 4.8E-09 64.1 15.1 171 6-183 40-246 (282)
167 3dss_A Geranylgeranyl transfer 98.0 0.0018 6.2E-08 58.5 22.8 233 8-247 28-315 (331)
168 2fbn_A 70 kDa peptidylprolyl i 98.0 1.5E-05 5E-10 66.8 8.2 121 82-204 10-148 (198)
169 2kck_A TPR repeat; tetratricop 98.0 5.6E-05 1.9E-09 55.9 10.7 92 78-170 8-105 (112)
170 3ro3_A PINS homolog, G-protein 98.0 8.8E-05 3E-09 58.8 11.7 95 109-203 51-154 (164)
171 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00015 5E-09 69.4 13.9 92 76-169 317-413 (457)
172 2dba_A Smooth muscle cell asso 97.9 0.00024 8.2E-09 55.5 12.8 94 107-204 28-125 (148)
173 1wao_1 Serine/threonine protei 97.9 5.2E-05 1.8E-09 73.0 9.8 121 9-131 9-134 (477)
174 4b4t_Q 26S proteasome regulato 97.8 0.00046 1.6E-08 64.9 16.3 186 47-232 10-238 (434)
175 1hxi_A PEX5, peroxisome target 97.8 0.00018 6.2E-09 54.9 10.9 91 44-135 20-113 (121)
176 2uy1_A Cleavage stimulation fa 97.8 0.0088 3E-07 57.5 25.0 175 126-318 198-418 (493)
177 2xev_A YBGF; tetratricopeptide 97.8 0.00039 1.3E-08 53.0 12.2 91 11-103 7-103 (129)
178 3k9i_A BH0479 protein; putativ 97.8 4.9E-05 1.7E-09 57.6 6.6 84 19-103 3-88 (117)
179 3n71_A Histone lysine methyltr 97.7 0.00019 6.4E-09 69.0 11.2 63 109-171 395-464 (490)
180 2xev_A YBGF; tetratricopeptide 97.7 0.00051 1.8E-08 52.4 11.8 85 83-169 9-103 (129)
181 2l6j_A TPR repeat-containing p 97.7 5.2E-05 1.8E-09 56.3 5.8 97 5-103 3-105 (111)
182 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00059 2E-08 65.1 14.6 125 76-204 268-412 (457)
183 3rkv_A Putative peptidylprolyl 97.7 0.00069 2.4E-08 54.3 12.9 60 76-135 63-125 (162)
184 3dss_A Geranylgeranyl transfer 97.7 0.0076 2.6E-07 54.4 20.9 215 52-270 40-304 (331)
185 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00014 4.7E-09 66.6 9.7 142 7-169 180-326 (338)
186 2uy1_A Cleavage stimulation fa 97.7 0.0081 2.8E-07 57.8 22.4 46 24-70 197-242 (493)
187 3rkv_A Putative peptidylprolyl 97.7 0.00069 2.4E-08 54.3 12.6 98 6-104 11-125 (162)
188 1ihg_A Cyclophilin 40; ppiase 97.7 0.00044 1.5E-08 64.0 12.8 134 8-163 225-362 (370)
189 1wao_1 Serine/threonine protei 97.7 0.00021 7.3E-09 68.7 10.9 115 85-202 15-134 (477)
190 2hr2_A Hypothetical protein; a 97.7 0.00074 2.5E-08 53.8 12.1 60 8-69 13-85 (159)
191 1ihg_A Cyclophilin 40; ppiase 97.6 0.00056 1.9E-08 63.3 12.9 118 78-199 225-362 (370)
192 3k9i_A BH0479 protein; putativ 97.6 8.8E-05 3E-09 56.1 6.1 82 121-204 4-87 (117)
193 3n71_A Histone lysine methyltr 97.6 0.00037 1.3E-08 66.9 11.8 119 86-204 319-461 (490)
194 1na3_A Designed protein CTPR2; 97.5 0.0011 3.9E-08 46.7 10.7 82 6-89 9-90 (91)
195 1klx_A Cysteine rich protein B 97.5 0.00088 3E-08 52.4 10.7 110 20-137 9-127 (138)
196 2if4_A ATFKBP42; FKBP-like, al 97.4 0.00045 1.5E-08 63.2 8.7 92 109-204 232-325 (338)
197 2l6j_A TPR repeat-containing p 97.4 0.00029 9.8E-09 52.1 5.9 92 109-204 6-104 (111)
198 2hr2_A Hypothetical protein; a 97.3 0.0038 1.3E-07 49.7 12.3 60 42-101 12-82 (159)
199 2kat_A Uncharacterized protein 97.3 0.0025 8.4E-08 47.6 10.9 78 24-103 3-80 (115)
200 1dce_A Protein (RAB geranylger 97.2 0.015 5.1E-07 57.0 18.0 112 22-135 45-172 (567)
201 1dce_A Protein (RAB geranylger 97.2 0.026 8.9E-07 55.2 19.6 164 93-259 46-244 (567)
202 1klx_A Cysteine rich protein B 97.0 0.012 4.1E-07 45.7 12.3 109 55-171 9-126 (138)
203 2kat_A Uncharacterized protein 97.0 0.007 2.4E-07 45.0 10.1 75 60-135 4-81 (115)
204 1na3_A Designed protein CTPR2; 97.0 0.01 3.6E-07 41.5 10.6 58 43-101 11-68 (91)
205 3ma5_A Tetratricopeptide repea 97.0 0.0047 1.6E-07 44.9 8.8 65 5-70 6-70 (100)
206 1zu2_A Mitochondrial import re 96.9 0.0025 8.7E-08 50.6 7.4 106 18-151 14-133 (158)
207 3mkq_A Coatomer beta'-subunit; 96.9 0.014 4.6E-07 59.7 14.5 101 153-265 663-773 (814)
208 3ma5_A Tetratricopeptide repea 96.9 0.0045 1.6E-07 45.0 8.1 60 75-134 6-68 (100)
209 3mkq_A Coatomer beta'-subunit; 96.8 0.058 2E-06 55.0 18.2 154 15-204 608-762 (814)
210 3qww_A SET and MYND domain-con 96.7 0.0047 1.6E-07 58.3 8.7 26 144-169 384-409 (433)
211 1zu2_A Mitochondrial import re 96.7 0.0059 2E-07 48.5 7.8 49 5-55 35-94 (158)
212 3ly7_A Transcriptional activat 96.6 0.056 1.9E-06 49.2 14.3 139 37-182 190-347 (372)
213 3qwp_A SET and MYND domain-con 96.5 0.011 3.9E-07 55.6 10.0 61 109-169 331-398 (429)
214 3qww_A SET and MYND domain-con 96.5 0.016 5.5E-07 54.6 10.9 81 55-135 312-410 (433)
215 3qwp_A SET and MYND domain-con 96.4 0.014 4.9E-07 54.9 10.2 26 109-134 373-398 (429)
216 3ly7_A Transcriptional activat 96.4 0.08 2.7E-06 48.2 14.0 140 73-215 191-348 (372)
217 2kc7_A BFR218_protein; tetratr 96.3 0.028 9.5E-07 40.2 9.1 59 12-71 6-65 (99)
218 3mkq_B Coatomer subunit alpha; 96.0 0.44 1.5E-05 38.3 15.3 105 85-207 14-118 (177)
219 2kc7_A BFR218_protein; tetratr 95.9 0.02 7E-07 40.9 6.4 51 85-135 9-63 (99)
220 3bee_A Putative YFRE protein; 94.9 0.24 8E-06 35.3 9.1 44 92-135 25-71 (93)
221 1pc2_A Mitochondria fission pr 94.3 0.33 1.1E-05 38.0 9.3 79 23-103 15-98 (152)
222 3bee_A Putative YFRE protein; 94.2 0.26 8.9E-06 35.0 8.1 64 209-272 5-74 (93)
223 1pc2_A Mitochondria fission pr 94.2 0.56 1.9E-05 36.7 10.4 84 56-142 13-104 (152)
224 3u64_A Protein TP_0956; tetrat 94.0 0.56 1.9E-05 41.0 11.1 61 78-138 201-271 (301)
225 1wy6_A Hypothetical protein ST 94.0 1.5 5.3E-05 33.4 13.9 85 88-175 73-157 (172)
226 3u64_A Protein TP_0956; tetrat 93.6 0.72 2.5E-05 40.4 11.1 95 89-184 176-283 (301)
227 1wy6_A Hypothetical protein ST 93.5 1.9 6.6E-05 32.9 14.5 135 120-273 20-157 (172)
228 2v5f_A Prolyl 4-hydroxylase su 93.2 0.75 2.5E-05 33.2 9.3 60 43-102 7-72 (104)
229 4h7y_A Dual specificity protei 92.8 1.1 3.6E-05 35.0 9.6 95 4-100 11-118 (161)
230 2v5f_A Prolyl 4-hydroxylase su 92.4 1.6 5.5E-05 31.4 10.2 66 6-71 5-76 (104)
231 3lvg_A Clathrin heavy chain 1; 92.1 0.0002 7E-09 66.7 -13.9 239 7-262 55-325 (624)
232 3mkq_B Coatomer subunit alpha; 92.1 3.9 0.00013 32.8 18.7 129 50-205 14-142 (177)
233 2p58_C Putative type III secre 91.6 2.7 9.2E-05 30.0 9.6 87 56-147 22-108 (116)
234 2uwj_G Type III export protein 90.8 2.5 8.7E-05 30.0 8.8 87 56-147 21-107 (115)
235 1v54_E Cytochrome C oxidase po 90.5 1.9 6.5E-05 30.8 8.1 63 122-186 25-87 (109)
236 3lvg_A Clathrin heavy chain 1; 89.8 0.00029 1E-08 65.7 -15.2 177 76-265 54-253 (624)
237 2ff4_A Probable regulatory pro 88.3 2.6 8.7E-05 38.8 9.9 60 43-103 173-232 (388)
238 3ffl_A Anaphase-promoting comp 87.8 8 0.00027 30.5 10.8 61 9-69 23-91 (167)
239 1nzn_A CGI-135 protein, fissio 86.6 4.7 0.00016 30.3 8.6 23 113-135 80-102 (126)
240 4fhn_B Nucleoporin NUP120; pro 86.6 16 0.00053 38.9 15.9 28 75-102 841-868 (1139)
241 2ff4_A Probable regulatory pro 86.5 3.1 0.00011 38.3 9.3 64 147-212 176-247 (388)
242 1nzn_A CGI-135 protein, fissio 86.2 8.9 0.0003 28.7 10.5 65 39-103 33-101 (126)
243 4gns_B Protein CSD3, chitin bi 86.2 12 0.00042 37.4 13.9 124 80-206 252-399 (754)
244 4fhn_B Nucleoporin NUP120; pro 86.2 15 0.00051 39.1 15.4 186 81-268 817-1048(1139)
245 1v54_E Cytochrome C oxidase po 85.7 5.5 0.00019 28.5 7.9 50 21-70 25-74 (109)
246 2y69_E Cytochrome C oxidase su 85.7 4.9 0.00017 30.4 8.1 63 122-186 68-130 (152)
247 4gns_B Protein CSD3, chitin bi 84.7 9.5 0.00033 38.3 12.3 124 44-169 251-398 (754)
248 4h7y_A Dual specificity protei 84.0 8.3 0.00028 30.0 8.9 35 40-75 12-52 (161)
249 4b4t_P 26S proteasome regulato 82.9 30 0.001 32.2 19.1 185 20-204 30-244 (445)
250 3ffl_A Anaphase-promoting comp 80.9 10 0.00036 29.9 8.7 110 83-206 27-150 (167)
251 3txn_A 26S proteasome regulato 78.6 40 0.0014 30.8 15.2 161 44-204 22-207 (394)
252 3lpz_A GET4 (YOR164C homolog); 77.9 38 0.0013 30.2 18.8 23 8-30 37-59 (336)
253 2y69_E Cytochrome C oxidase su 77.1 14 0.00048 28.0 7.8 59 57-115 69-130 (152)
254 2wpv_A GET4, UPF0363 protein Y 75.0 44 0.0015 29.4 18.4 68 63-130 79-157 (312)
255 4ady_A RPN2, 26S proteasome re 73.2 89 0.0031 32.2 15.2 111 119-232 502-616 (963)
256 4b4t_R RPN7, 26S proteasome re 70.4 23 0.00079 32.8 9.8 57 78-134 133-195 (429)
257 4b4t_R RPN7, 26S proteasome re 66.6 73 0.0025 29.4 12.3 96 109-204 133-234 (429)
258 3lpz_A GET4 (YOR164C homolog); 63.0 83 0.0028 28.0 24.3 167 79-269 38-215 (336)
259 1wdy_A 2-5A-dependent ribonucl 62.6 67 0.0023 26.8 10.8 206 10-234 6-240 (285)
260 1k1a_A B-cell lymphoma 3-encod 61.5 43 0.0015 27.3 9.0 84 15-102 15-102 (241)
261 3o48_A Mitochondria fission 1 61.4 50 0.0017 24.9 9.5 66 38-103 37-105 (134)
262 2nsz_A Programmed cell death p 61.3 32 0.0011 25.8 7.2 62 79-140 10-76 (129)
263 3esl_A Checkpoint serine/threo 58.8 73 0.0025 25.9 10.6 63 55-117 93-156 (202)
264 2d2s_A Exocyst complex compone 58.3 60 0.0021 27.2 9.1 89 11-102 23-117 (235)
265 1zbp_A Hypothetical protein VP 57.9 24 0.00082 30.3 6.5 52 151-204 6-57 (273)
266 1y8m_A FIS1; mitochondria, unk 56.5 64 0.0022 24.6 11.9 28 243-270 79-106 (144)
267 2qx5_A Nucleoporin NIC96; mRNA 56.3 72 0.0025 31.4 10.5 17 251-267 548-564 (661)
268 2wpv_A GET4, UPF0363 protein Y 56.2 1.1E+02 0.0036 27.0 23.0 168 78-269 35-216 (312)
269 2pk8_A Uncharacterized protein 55.2 5.6 0.00019 27.6 1.7 78 295-397 10-90 (103)
270 4b4t_P 26S proteasome regulato 53.5 1.4E+02 0.0048 27.6 19.5 176 55-232 30-240 (445)
271 2l0z_A Glycoprotein G2; zinc-b 53.2 4.2 0.00014 23.3 0.7 18 392-409 11-29 (42)
272 2ion_A PDCD4, programmed cell 52.0 31 0.001 26.7 5.8 62 79-140 12-78 (152)
273 1y8m_A FIS1; mitochondria, unk 51.8 78 0.0027 24.2 10.7 66 38-103 36-104 (144)
274 2nsz_A Programmed cell death p 49.4 41 0.0014 25.1 6.0 73 8-81 9-83 (129)
275 4ady_A RPN2, 26S proteasome re 46.6 2.6E+02 0.009 28.8 14.0 188 23-219 471-670 (963)
276 2ion_A PDCD4, programmed cell 45.0 52 0.0018 25.4 6.1 73 8-81 11-85 (152)
277 2k0q_A Putative uncharacterize 44.7 8.3 0.00028 25.1 1.2 23 385-407 7-29 (74)
278 3o48_A Mitochondria fission 1 43.5 1E+02 0.0035 23.2 9.6 71 139-210 37-111 (134)
279 3ltj_A Alpharep-4; protein eng 43.4 1.2E+02 0.0041 23.9 19.2 48 177-225 120-167 (201)
280 3esl_A Checkpoint serine/threo 43.3 1.3E+02 0.0045 24.4 8.5 67 9-76 83-150 (202)
281 4b4t_S RPN3, 26S proteasome re 42.9 2.3E+02 0.0077 26.9 12.6 60 76-135 231-298 (523)
282 3ygs_P Procaspase 9; apoptosis 42.8 34 0.0011 24.1 4.4 38 90-127 51-88 (97)
283 2d2s_A Exocyst complex compone 42.5 65 0.0022 27.0 6.8 29 176-204 89-117 (235)
284 4a1g_A Mitotic checkpoint seri 41.8 1.2E+02 0.004 23.4 9.4 49 94-142 83-136 (152)
285 2p1h_A APAF-1, apoptotic prote 38.7 94 0.0032 21.4 7.0 61 62-126 26-86 (94)
286 4a1g_A Mitotic checkpoint seri 38.6 1E+02 0.0035 23.7 6.8 79 37-118 64-143 (152)
287 3aji_A 26S proteasome non-ATPa 38.6 82 0.0028 25.4 7.0 19 13-31 10-28 (231)
288 3eu9_A Huntingtin-interacting 38.1 1.5E+02 0.0053 23.6 9.7 56 216-271 180-237 (240)
289 1qsa_A Protein (soluble lytic 38.0 2.9E+02 0.01 26.8 22.8 45 13-62 79-123 (618)
290 3cqc_A Nuclear pore complex pr 37.6 64 0.0022 27.7 6.1 63 242-321 201-263 (270)
291 2yru_A Steroid receptor RNA ac 37.6 64 0.0022 23.7 5.2 63 8-70 21-90 (118)
292 4gq2_M Nucleoporin NUP120; bet 35.6 3.9E+02 0.013 27.6 13.3 48 144-192 899-950 (950)
293 2wvi_A Mitotic checkpoint seri 35.3 1.6E+02 0.0054 23.0 8.2 78 37-117 59-137 (164)
294 3i5p_A Nucleoporin NUP170; hel 35.2 2.6E+02 0.0088 26.6 10.4 65 208-272 176-248 (525)
295 2fe3_A Peroxide operon regulat 34.3 1E+02 0.0036 23.2 6.4 64 131-196 11-74 (145)
296 1oai_A Nuclear RNA export fact 34.2 31 0.0011 21.8 2.7 24 19-42 33-57 (59)
297 4gq2_M Nucleoporin NUP120; bet 34.0 3.2E+02 0.011 28.2 11.8 51 148-204 816-866 (950)
298 3ltm_A Alpha-REP4; protein eng 33.2 1.8E+02 0.0062 23.0 18.5 48 75-122 63-110 (211)
299 3ltm_A Alpha-REP4; protein eng 33.1 1.8E+02 0.0062 23.0 19.2 170 4-190 31-200 (211)
300 3ltj_A Alpharep-4; protein eng 31.8 1.8E+02 0.0063 22.7 19.2 170 39-222 26-195 (201)
301 1k1a_A B-cell lymphoma 3-encod 31.7 1.1E+02 0.0036 24.8 6.6 51 50-100 15-67 (241)
302 3qye_A TBC1 domain family memb 31.7 2.6E+02 0.0089 24.4 10.8 129 20-155 163-307 (331)
303 3txn_A 26S proteasome regulato 30.5 3.1E+02 0.011 24.9 18.1 224 11-272 104-345 (394)
304 2lo3_A SAGA-associated factor 30.3 12 0.00042 21.6 0.2 11 366-376 16-26 (44)
305 3kea_A K1L; tropism, ANK repea 29.7 1.9E+02 0.0066 24.3 8.2 86 185-275 133-222 (285)
306 2keb_A DNA polymerase subunit 29.5 1.5E+02 0.0051 20.9 7.3 60 125-184 27-88 (101)
307 2wvi_A Mitotic checkpoint seri 29.3 2E+02 0.007 22.4 8.4 34 241-274 96-129 (164)
308 3jxi_A Vanilloid receptor-rela 29.1 1.2E+02 0.0041 25.0 6.6 55 13-67 9-72 (260)
309 4aez_C MAD3, mitotic spindle c 28.6 1.7E+02 0.0058 24.2 6.9 50 93-142 131-185 (223)
310 4b4t_S RPN3, 26S proteasome re 28.6 3.8E+02 0.013 25.4 10.6 64 7-70 232-299 (523)
311 2xig_A Ferric uptake regulatio 28.4 1.6E+02 0.0054 22.4 6.5 64 131-196 16-79 (150)
312 4aez_C MAD3, mitotic spindle c 28.4 1.2E+02 0.0042 25.0 6.1 60 58-117 131-191 (223)
313 3b7b_A Euchromatic histone-lys 28.2 1.7E+02 0.0059 23.4 7.4 21 249-269 215-235 (237)
314 1zbp_A Hypothetical protein VP 27.6 2.9E+02 0.0099 23.6 12.8 52 51-103 7-58 (273)
315 2hgo_A CASSIICOLIN; toxin, dis 27.3 12 0.00043 18.4 -0.1 14 397-410 7-22 (27)
316 2yru_A Steroid receptor RNA ac 27.2 94 0.0032 22.8 4.6 42 129-170 48-89 (118)
317 3eiq_C Programmed cell death p 26.7 1.5E+02 0.0051 26.6 6.8 66 110-177 220-287 (358)
318 2zu6_B Programmed cell death p 26.6 3.2E+02 0.011 23.8 11.2 25 9-33 6-30 (307)
319 3f3f_C Nucleoporin NUP85; stru 26.4 2.2E+02 0.0076 27.3 8.1 50 43-94 518-567 (570)
320 3l6a_A Eukaryotic translation 25.2 1.9E+02 0.0064 26.0 7.3 76 8-87 14-94 (364)
321 3kea_A K1L; tropism, ANK repea 24.9 1.2E+02 0.004 25.8 5.8 171 48-233 35-215 (285)
322 2zu6_B Programmed cell death p 24.9 1.9E+02 0.0064 25.3 7.0 26 80-105 170-195 (307)
323 2uwj_G Type III export protein 24.6 1.9E+02 0.0066 20.6 8.3 81 20-108 20-100 (115)
324 2dod_A Transcription elongatio 24.4 90 0.0031 21.2 3.8 30 158-188 16-45 (82)
325 3ljn_A Hypothetical protein; a 24.2 3.5E+02 0.012 23.5 9.4 174 83-266 57-266 (364)
326 2p58_C Putative type III secre 24.1 2E+02 0.0068 20.5 9.5 82 20-109 21-102 (116)
327 2dzn_A Probable 26S proteasome 23.7 1.7E+02 0.0057 23.3 6.4 17 15-31 8-24 (228)
328 3hra_A Ankyrin repeat family p 23.7 1.8E+02 0.0061 22.6 6.4 81 16-101 12-94 (201)
329 3eiq_C Programmed cell death p 23.5 2.3E+02 0.0077 25.4 7.4 72 9-81 220-293 (358)
330 4ets_A Ferric uptake regulatio 23.3 1.4E+02 0.0049 23.1 5.4 72 124-196 14-87 (162)
331 2b7e_A PRE-mRNA processing pro 22.9 64 0.0022 20.4 2.6 29 124-152 3-31 (59)
332 2qfz_A TBC1 domain family memb 22.5 2.2E+02 0.0075 25.1 7.3 108 22-133 188-312 (345)
333 3ljn_A Hypothetical protein; a 22.1 3.7E+02 0.013 23.3 8.9 213 4-234 16-265 (364)
334 1n11_A Ankyrin; clathrin, BAND 21.5 3.2E+02 0.011 24.5 8.5 233 26-265 27-266 (437)
335 2o03_A Probable zinc uptake re 21.5 1.3E+02 0.0045 22.2 4.7 48 148-196 16-63 (131)
336 3hra_A Ankyrin repeat family p 21.2 1.5E+02 0.005 23.1 5.4 123 9-141 40-172 (201)
337 1ug3_A EIF4GI, eukaryotic prot 20.4 3E+02 0.01 24.2 7.7 27 79-105 14-40 (339)
338 3l6a_A Eukaryotic translation 20.4 1.8E+02 0.0062 26.1 6.1 25 81-105 17-41 (364)
339 2cos_A Serine/threonine protei 20.3 1.6E+02 0.0055 18.1 3.9 40 61-105 10-51 (54)
340 1wty_A Hypothetical protein TT 20.3 2.5E+02 0.0085 20.3 5.9 67 122-194 3-69 (119)
341 3twe_A Alpha4H; unknown functi 20.2 93 0.0032 15.3 2.7 17 299-315 2-18 (27)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=5.4e-32 Score=262.77 Aligned_cols=185 Identities=15% Similarity=0.186 Sum_probs=166.6
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCC---------HHHHHHHHHHHHHcCCCccH
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA---------LNHAYWVHNLIIEKKIELNF 76 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~---------~~~a~~~~~~~~~~g~~~~~ 76 (410)
...++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|+.|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346888899999999999999999999999999999999999999987654 78899999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccc----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040371 77 ILSAALIDMYSKCGKIQMAKEVFDTVQR----NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTAC 152 (410)
Q Consensus 77 ~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 152 (410)
.+||+||++|++.|++++|.++|++|.+ ||+.+||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999873 688999999999999999999999999999999999999999999999
Q ss_pred HccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhc
Q 040371 153 SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRA 191 (410)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 191 (410)
++.|++++|.++|++|.+. |..|+..||+.++..|+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999875 9999999999999988764
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=3.3e-31 Score=257.19 Aligned_cols=201 Identities=9% Similarity=0.112 Sum_probs=174.5
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC---------H
Q 040371 23 DEALRFFREMLSSKVEPDK-FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK---------I 92 (410)
Q Consensus 23 ~~a~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---------~ 92 (410)
..+..+++++.+.++.+.+ ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+||+||++|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455677788777766544 46889999999999999999999999999999999999999999998765 7
Q ss_pred HHHHHHHHhcc----cCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 040371 93 QMAKEVFDTVQ----RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM 168 (410)
Q Consensus 93 ~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 168 (410)
++|.++|++|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999997 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcC
Q 040371 169 RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM---TMEPDVVVWRALLSACRTFK 224 (410)
Q Consensus 169 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~~g 224 (410)
.+. |+.||..+|++||++|++.|++++|.+++++| +..|+..||+.++..++..+
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 975 99999999999999999999999999999999 78999999999999987643
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.95 E-value=4e-27 Score=234.93 Aligned_cols=309 Identities=9% Similarity=-0.120 Sum_probs=246.0
Q ss_pred CCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 040371 2 PDKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAA 81 (410)
Q Consensus 2 ~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 81 (410)
|.+++.+|+.++..|.+.|++++|+.+|++|.. ..||..++..++.+|.+.|++++|.++|+.+... +++..+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 155 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYL 155 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHH
Confidence 457889999999999999999999999999985 5788899999999999999999999999988654 678999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccC-------------------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC----
Q 040371 82 LIDMYSKCGKIQMAKEVFDTVQRN-------------------DVSVWNAMISGVAIHGLAADASAIFTKMEMFNV---- 138 (410)
Q Consensus 82 li~~y~~~g~~~~A~~~f~~m~~~-------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---- 138 (410)
++.+|.++|++++|.++|+++... ++.+|+.++.+|.+.|++++|+++|++|.+.+.
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 235 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE 235 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhH
Confidence 999999999999999999954433 478999999999999999999999999975431
Q ss_pred ------------------------------------------------------------------CCCHHHHHHHHHHH
Q 040371 139 ------------------------------------------------------------------LPDSITFLGLLTAC 152 (410)
Q Consensus 139 ------------------------------------------------------------------~p~~~t~~~ll~a~ 152 (410)
.++..++..++.+|
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 15677788888888
Q ss_pred HccCCHHHHHHHHHHhhhhcC--------------------------------CCCChhHHHHHHHHHHhcCCHHHHHHH
Q 040371 153 SHCGLVEEGRKYFDHMRSRYS--------------------------------IQPQLEHYGAMVDLLGRAGHIEEAYGL 200 (410)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~~~--------------------------------~~~~~~~~~~li~~~~~~g~~~~A~~~ 200 (410)
.+.|++++|..+|+.+.+... .+.+..+|+.++.+|.+.|++++|.++
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHH
Confidence 899999999999988874311 122456777788888888888888888
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHH---HhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCC
Q 040371 201 ITSM-TMEP-DVVVWRALLSACRTFKRLELGEVAI---VNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKS 275 (410)
Q Consensus 201 ~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 275 (410)
|+++ ...| +..+|+.++.++.+.|++++|..++ .+..|.+..++..++.+|.+.|++++|.++|+++.+.. |+
T Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~ 473 (597)
T 2xpi_A 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QY 473 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC
Confidence 8876 3334 5778888888888888888888883 44567777788888888888888888888888887643 22
Q ss_pred CceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHCCcccCC
Q 040371 276 QGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLPAT 323 (410)
Q Consensus 276 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~ 323 (410)
....|.. +...+...|+.++|.+.++++.+...+.|..|+.
T Consensus 474 ~~~~~~~-------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 474 DPLLLNE-------LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514 (597)
T ss_dssp CHHHHHH-------HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred ChHHHHH-------HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence 2222321 2344556789999999999777766666777874
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.95 E-value=4.8e-25 Score=219.85 Aligned_cols=262 Identities=14% Similarity=0.077 Sum_probs=238.2
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 040371 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALI 83 (410)
Q Consensus 4 ~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 83 (410)
+|+.+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.++.+.|++++|.++++.+.+.. +.+..+++.++
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 380 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVG 380 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 788999999999999999999999999999764 4477899999999999999999999999999764 56899999999
Q ss_pred HHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 040371 84 DMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE 160 (410)
Q Consensus 84 ~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 160 (410)
.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|++|...+ +++..++..++.+|.+.|++++
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998863 467899999999999999999999999998864 4478899999999999999999
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCchhHHHH
Q 040371 161 GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-------TMEPD--VVVWRALLSACRTFKRLELGEV 231 (410)
Q Consensus 161 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~li~~~~~~g~~~~a~~ 231 (410)
|.++|+.+.+. .+.+..+|+.++..|.+.|++++|.++|+++ +..|+ ..+|..+..+|...|++++|..
T Consensus 460 A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 537 (597)
T 2xpi_A 460 ANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537 (597)
T ss_dssp HHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999864 2346889999999999999999999999988 45787 7899999999999999999999
Q ss_pred H---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040371 232 A---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 232 ~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 270 (410)
. ..+..|.++.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 538 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 538 ALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9 45567888899999999999999999999999998874
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.86 E-value=9.1e-20 Score=171.91 Aligned_cols=291 Identities=11% Similarity=0.045 Sum_probs=226.9
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 84 (410)
+..+|+.+...|.+.|++++|++.|+++.+.. +.+..+|..+..++...|++++|.+.+..+++.. +.+..++..+..
T Consensus 66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 143 (388)
T 1w3b_A 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGN 143 (388)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 55678888888888888888888888887642 3345578888888888888888888888888764 335667777888
Q ss_pred HHHhcCCHHHHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 040371 85 MYSKCGKIQMAKEVFDTVQR--N-DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG 161 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 161 (410)
.|.+.|++++|.+.|+++.+ | +..+|+.+...|.+.|++++|+..|+++.... +.+...+..+...+...|++++|
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 144 LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888887753 3 46788888888888888999999888888743 22456677888888888999999
Q ss_pred HHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHH---HHh
Q 040371 162 RKYFDHMRSRYSIQP-QLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGEVA---IVN 235 (410)
Q Consensus 162 ~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~---~~~ 235 (410)
...|....+. .| +..++..+...|.+.|++++|.+.|+++ ...| +..+|..+...+...|++++|... ..+
T Consensus 223 ~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 223 VAAYLRALSL---SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9888887743 34 4678889999999999999999999987 4455 467899999999999999999998 456
Q ss_pred hccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHH
Q 040371 236 ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSL 310 (410)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 310 (410)
..|.++.++..+..+|.+.|++++|.+.++++.+.. |+....|.. +...+...|+.++|...+++.
T Consensus 300 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~-------l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSN-------LASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--TTCHHHHHH-------HHHHHHTTTCCHHHHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHH-------HHHHHHHcCCHHHHHHHHHHH
Confidence 678888889999999999999999999999987642 332222221 223455678889999888743
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.84 E-value=2.3e-18 Score=162.26 Aligned_cols=259 Identities=12% Similarity=0.059 Sum_probs=226.0
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEP-DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALI 83 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 83 (410)
+..+|+.+..+|.+.|++++|++.|+++.+. .| +...+..+...+...|++++|.+.++.+++.. +.+..+++.+.
T Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 176 (388)
T 1w3b_A 100 FIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLG 176 (388)
T ss_dssp CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4567999999999999999999999999875 44 45577788888999999999999999999874 45688999999
Q ss_pred HHHHhcCCHHHHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHH
Q 040371 84 DMYSKCGKIQMAKEVFDTVQR--N-DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVE 159 (410)
Q Consensus 84 ~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 159 (410)
..|.+.|++++|...|+++.+ | +...|..+...+...|++++|+..|++.... .| +..++..+...+...|+++
T Consensus 177 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 254 (388)
T 1w3b_A 177 CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLID 254 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999998863 3 5678999999999999999999999998874 45 5788899999999999999
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHH---H
Q 040371 160 EGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TME-PDVVVWRALLSACRTFKRLELGEVAI---V 234 (410)
Q Consensus 160 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~~~---~ 234 (410)
+|...|+.+.+. -+.+..+|..+...|.+.|++++|.+.|+++ ... .+..+|..+...+...|++++|...+ .
T Consensus 255 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 332 (388)
T 1w3b_A 255 LAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp HHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999853 2335778999999999999999999999988 333 47889999999999999999999994 4
Q ss_pred hhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040371 235 NISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 270 (410)
+..|.+..++..+..+|.+.|++++|.+.++++.+.
T Consensus 333 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 333 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556777788999999999999999999999998764
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.84 E-value=5.1e-19 Score=169.89 Aligned_cols=292 Identities=10% Similarity=-0.010 Sum_probs=234.3
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 84 (410)
++..|..+...|.+.|++++|+.+|+++.+. .+.+..+|..+..++...|++++|...++.+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 4568999999999999999999999999875 25578899999999999999999999999999886 456889999999
Q ss_pred HHHhcCCHHHHHHHHHhcccCC---h---hhHHHHHH------------HHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 040371 85 MYSKCGKIQMAKEVFDTVQRND---V---SVWNAMIS------------GVAIHGLAADASAIFTKMEMFNVLPDSITFL 146 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~~~---~---~~~~~li~------------~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 146 (410)
+|.+.|++++|.+.|+++.+.+ . ..|..++. .|.+.|++++|+..|+++.... +.+..++.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 181 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE 181 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 9999999999999999987532 3 56666644 4888999999999999998753 34677888
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHH--------
Q 040371 147 GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPD-VVVWRAL-------- 216 (410)
Q Consensus 147 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l-------- 216 (410)
.+..++...|++++|..+|+.+.+. .+.+..+|..+...|.+.|++++|...|+++ ...|+ ...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999998853 2346789999999999999999999999988 44454 4445444
Q ss_pred ----HHHHHhcCchhHHHHH---HHhhccCCC----chHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCCceeEEEECC
Q 040371 217 ----LSACRTFKRLELGEVA---IVNISRLMG----GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAG 285 (410)
Q Consensus 217 ----i~~~~~~g~~~~a~~~---~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~ 285 (410)
...+...|++++|... ..+..|.++ ..+..+..+|.+.|++++|...++++.+.. |+....|..
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~--- 334 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--PDNVNALKD--- 334 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHH---
Confidence 7788999999999998 344556553 267788999999999999999999887642 322223321
Q ss_pred EEEEEEeCCCCCccHHHHHHHHHHH
Q 040371 286 VIHQFKAGDRSHPEAQAIDKILGSL 310 (410)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~l~~l 310 (410)
+...+...|+.++|...+++.
T Consensus 335 ----l~~~~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 335 ----RAEAYLIEEMYDEAIQDYETA 355 (450)
T ss_dssp ----HHHHHHHTTCHHHHHHHHHHH
T ss_pred ----HHHHHHHhcCHHHHHHHHHHH
Confidence 223345678888888888743
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.83 E-value=5.7e-18 Score=162.54 Aligned_cols=261 Identities=12% Similarity=0.024 Sum_probs=222.5
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccH---HHHH
Q 040371 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNF---ILSA 80 (410)
Q Consensus 4 ~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~ 80 (410)
.+..+|..+...|.+.|++++|+..|+++.+.+ +.+..++..+..++...|++++|.+.++.+.+.. +.+. ..+.
T Consensus 58 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 135 (450)
T 2y4t_A 58 DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQS 135 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHH
Confidence 467899999999999999999999999999864 4467899999999999999999999999999864 3344 5666
Q ss_pred HHH------------HHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 040371 81 ALI------------DMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145 (410)
Q Consensus 81 ~li------------~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 145 (410)
.+. ..|.+.|++++|...|+++.+ .+..+|..+...|.+.|++++|++.|+++.... +.+..++
T Consensus 136 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 214 (450)
T 2y4t_A 136 QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAF 214 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 554 449999999999999998763 467899999999999999999999999998753 3467889
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhcCCCCC-hhHHHHH------------HHHHHhcCCHHHHHHHHHhC-CCCCC--
Q 040371 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ-LEHYGAM------------VDLLGRAGHIEEAYGLITSM-TMEPD-- 209 (410)
Q Consensus 146 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~l------------i~~~~~~g~~~~A~~~~~~m-~~~p~-- 209 (410)
..+...+...|++++|...|+.+.+. .|+ ...+..+ ...|.+.|++++|...|+++ ...|+
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 291 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIA 291 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch
Confidence 99999999999999999999999853 343 4445444 78899999999999999988 34454
Q ss_pred ---HHHHHHHHHHHHhcCchhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040371 210 ---VVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 210 ---~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 270 (410)
...|..+...+...|++++|... ..+..|.++..+..+..+|...|++++|.+.+++..+.
T Consensus 292 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 292 EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45788888999999999999999 44567888889999999999999999999999998874
No 9
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=1.2e-19 Score=181.88 Aligned_cols=131 Identities=11% Similarity=0.122 Sum_probs=115.0
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHhcc-------cCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 040371 73 ELNFILSAALIDMYSKCGKIQMAKEVFDTVQ-------RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF 145 (410)
Q Consensus 73 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 145 (410)
..-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345789999999999999999999998764 479999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCC-HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 146 LGLLTACSHCGL-VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 146 ~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
+++|.++++.|. .++|.++|++|.++ |+.||..+|++++....+.+-++.+.++...+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999999999998 47899999999987 99999999999998887775555554444333
No 10
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=1e-16 Score=146.86 Aligned_cols=261 Identities=11% Similarity=0.049 Sum_probs=222.9
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 84 (410)
|...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++.+++.. +.+..++..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 45567788899999999999999999998753 4455677778888999999999999999999875 456788999999
Q ss_pred HHHhcC-CHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 040371 85 MYSKCG-KIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE 160 (410)
Q Consensus 85 ~y~~~g-~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 160 (410)
.|...| ++++|.+.|++..+ .+...|..+...|...|++++|++.|++..... +.+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 999999 99999999998764 356789999999999999999999999998753 2245667778899999999999
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCchhHH
Q 040371 161 GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TM----------EPDVVVWRALLSACRTFKRLELG 229 (410)
Q Consensus 161 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------~p~~~~~~~li~~~~~~g~~~~a 229 (410)
|...|+.+.+. .+.+...+..+...|.+.|++++|...+++. .. ..+..+|..+...+...|++++|
T Consensus 178 A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 178 AERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999853 3445788999999999999999999999877 11 23467899999999999999999
Q ss_pred HHH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040371 230 EVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 230 ~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 270 (410)
... ..+..|.++..+..+..+|.+.|++++|.+.+++..+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999 55667888899999999999999999999999876543
No 11
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=8.1e-17 Score=150.13 Aligned_cols=257 Identities=13% Similarity=0.027 Sum_probs=215.1
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 84 (410)
+...|..+...|.+.|++++|+..|+++.+.. +.+..++..+..++...|+++.|...++.+++.. +.+..++..+..
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 140 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAV 140 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45678899999999999999999999999863 4577899999999999999999999999999885 557889999999
Q ss_pred HHHhcCCHHHHHHHHHhcccC---ChhhHHH---------------HHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHH
Q 040371 85 MYSKCGKIQMAKEVFDTVQRN---DVSVWNA---------------MISGVAIHGLAADASAIFTKMEMFNVL-PDSITF 145 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~~---~~~~~~~---------------li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~ 145 (410)
.|.+.|++++|.+.|+++... +...+.. .+..+...|++++|+..|+++...... ++..++
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 999999999999999987642 2223321 233444889999999999999875322 147888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 040371 146 LGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTF 223 (410)
Q Consensus 146 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~ 223 (410)
..+...+...|++++|...|+.+.+. .+.+...|..+...|.+.|++++|...|++. ...| +...|..+...+...
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 99999999999999999999998854 2335788999999999999999999999987 3444 578899999999999
Q ss_pred CchhHHHHH---HHhhccCC-----------CchHHHHHHHHHhcCChhHHHHHHH
Q 040371 224 KRLELGEVA---IVNISRLM-----------GGDYVLLSNMYCYLKRWDTAENVRE 265 (410)
Q Consensus 224 g~~~~a~~~---~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~ 265 (410)
|++++|... ..+..|.+ ..+|..+..+|...|++++|..+++
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 999999998 44555655 5678899999999999999998875
No 12
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=4.9e-17 Score=151.79 Aligned_cols=258 Identities=12% Similarity=0.025 Sum_probs=211.0
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 84 (410)
+...|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|...++++++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 55679999999999999999999999998753 4578899999999999999999999999999875 456889999999
Q ss_pred HHHhcCCHHHHHHHHHhcccCC-------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 040371 85 MYSKCGKIQMAKEVFDTVQRND-------------VSVWNAMISGVAIHGLAADASAIFTKMEMFNVL-PDSITFLGLLT 150 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~~~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~ 150 (410)
.|.+.|++++|...|+++.+.+ ...++.+...|...|++++|++.|+++...... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999886421 123344578899999999999999999886322 15788999999
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhH
Q 040371 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLEL 228 (410)
Q Consensus 151 a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~ 228 (410)
.+...|++++|...|+.+.+. .+.+..+|..+...|.+.|++++|...|++. ...| +..+|..+...+...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999864 2345789999999999999999999999987 4445 47889999999999999999
Q ss_pred HHHH---HHhhccC------------CCchHHHHHHHHHhcCChhHHHHHHHH
Q 040371 229 GEVA---IVNISRL------------MGGDYVLLSNMYCYLKRWDTAENVREI 266 (410)
Q Consensus 229 a~~~---~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 266 (410)
|... ..++.|. +...+..+..++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999 3444444 256788899999999999988877643
No 13
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=3.2e-19 Score=178.92 Aligned_cols=146 Identities=11% Similarity=0.114 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHH---HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcc----cCChhhHHHH
Q 040371 41 KFTFASVIYGCARLGALNHAYWVHNLII---EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ----RNDVSVWNAM 113 (410)
Q Consensus 41 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~---~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~l 113 (410)
..||+++|++|++.|++++|.++|..|. +.|+.||+.+||+||++|++.|++++|.++|++|. .||++|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4689999999999999999999998876 45899999999999999999999999999999997 5899999999
Q ss_pred HHHHHHcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCC------hhHHHHHHH
Q 040371 114 ISGVAIHGLA-ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ------LEHYGAMVD 186 (410)
Q Consensus 114 i~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~------~~~~~~li~ 186 (410)
|.++++.|+. ++|.++|++|...|+.||.+||++++.++.+.+-++.. +.+.. ++.|+ ..+...|.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V----rkv~P--~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV----HKVKP--TFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH----GGGCC--CCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH----HHhCc--ccCCCCCCcccccchHHHHH
Confidence 9999999985 78999999999999999999999999887765444444 44432 33333 455566778
Q ss_pred HHHhcC
Q 040371 187 LLGRAG 192 (410)
Q Consensus 187 ~~~~~g 192 (410)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 887765
No 14
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.75 E-value=8.5e-17 Score=156.74 Aligned_cols=294 Identities=12% Similarity=0.023 Sum_probs=231.5
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 84 (410)
+...|-.....|.+.|++++|+..|+++.... ||..+|..+..++...|+++.|.+.++.+++.+ +.+..++..+..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 34567888899999999999999999999854 799999999999999999999999999999875 557889999999
Q ss_pred HHHhcCCHHHHHHHHHhcccCC----------------------------------------------------------
Q 040371 85 MYSKCGKIQMAKEVFDTVQRND---------------------------------------------------------- 106 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~~~---------------------------------------------------------- 106 (410)
+|.+.|++++|...|+++...+
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999998774321
Q ss_pred ------------------------hhhHHHHHHHHHH---cCChHHHHHHHHHHHH-----CCCCC--------CHHHHH
Q 040371 107 ------------------------VSVWNAMISGVAI---HGLAADASAIFTKMEM-----FNVLP--------DSITFL 146 (410)
Q Consensus 107 ------------------------~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~~p--------~~~t~~ 146 (410)
...|......+.. .|++++|+..|+++.. ....| +..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1222223333333 7999999999999987 32122 345677
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 040371 147 GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFK 224 (410)
Q Consensus 147 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g 224 (410)
.+...+...|++++|..+|+.+.+. .|+...+..+...|...|++++|...+++. ...| +...|..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIEL---FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhC
Confidence 8888899999999999999998864 344788899999999999999999999887 4444 5678888999999999
Q ss_pred chhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCccHH
Q 040371 225 RLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQ 301 (410)
Q Consensus 225 ~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 301 (410)
++++|... ..+..|.+...+..+...|...|++++|...++++.+.. |+....|.. +...+...|+.+
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~-------la~~~~~~~~~~ 389 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNF-------FAEILTDKNDFD 389 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHH-------HHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHH-------HHHHHHHCCCHH
Confidence 99999998 455678888889999999999999999999999987643 222122211 112234567888
Q ss_pred HHHHHHHHHHHH
Q 040371 302 AIDKILGSLIQR 313 (410)
Q Consensus 302 ~~~~~l~~l~~~ 313 (410)
+|...+++....
T Consensus 390 ~A~~~~~~a~~~ 401 (514)
T 2gw1_A 390 KALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 998888865543
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.74 E-value=3.5e-15 Score=137.98 Aligned_cols=261 Identities=11% Similarity=-0.004 Sum_probs=143.8
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCC--ccHHHHHHH-
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIE--LNFILSAAL- 82 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l- 82 (410)
..+|..+...|...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.... .+...+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (359)
T 3ieg_A 37 YIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV 115 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHH
Confidence 4455555555555555555555555555431 223445555555555555555555555555554210 233333333
Q ss_pred -----------HHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040371 83 -----------IDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGL 148 (410)
Q Consensus 83 -----------i~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 148 (410)
...|...|++++|.+.|+++.+ .+...|..+...|...|++++|+..|++..... +.+..++..+
T Consensus 116 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 194 (359)
T 3ieg_A 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKI 194 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3455555666666665555432 244455566666666666666666666665532 2245555666
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHH------------HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H----
Q 040371 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG------------AMVDLLGRAGHIEEAYGLITSM-TMEPD-V---- 210 (410)
Q Consensus 149 l~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p~-~---- 210 (410)
...+...|++++|...|+...+.. +.+...+. .+...+.+.|++++|...+++. ...|+ .
T Consensus 195 a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 272 (359)
T 3ieg_A 195 STLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTV 272 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHH
Confidence 666666666666666666665421 11222222 2244466666666666666665 22232 2
Q ss_pred HHHHHHHHHHHhcCchhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040371 211 VVWRALLSACRTFKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 211 ~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 270 (410)
..+..+...+...|++++|... ..+..|.++..+..+..+|...|++++|.+.+++..+.
T Consensus 273 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 273 RSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 1233455566677777777776 34455666667777777777777777777777776653
No 16
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=2.6e-16 Score=143.93 Aligned_cols=257 Identities=10% Similarity=-0.028 Sum_probs=213.5
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 84 (410)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|+++.|.+.++.+.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 44567788899999999999999999998753 4477889999999999999999999999999875 557889999999
Q ss_pred HHHhcCCHHHHHHHHHhcccC---ChhhHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 040371 85 MYSKCGKIQMAKEVFDTVQRN---DVSVWNAM--------------IS-GVAIHGLAADASAIFTKMEMFNVLPDSITFL 146 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 146 (410)
.|.+.|++++|.+.|++.... +...+..+ .. .+...|++++|.+.|+++.... +.+..++.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 999999999999999987643 23334333 22 3777899999999999998753 33678888
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 040371 147 GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFK 224 (410)
Q Consensus 147 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g 224 (410)
.+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|...+++. ...| +..+|..+...+...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998864 2335788999999999999999999999987 3334 5788999999999999
Q ss_pred chhHHHHH---HHhhccC------------CCchHHHHHHHHHhcCChhHHHHHHHH
Q 040371 225 RLELGEVA---IVNISRL------------MGGDYVLLSNMYCYLKRWDTAENVREI 266 (410)
Q Consensus 225 ~~~~a~~~---~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 266 (410)
++++|... .....|. +...+..+..+|.+.|++++|..++++
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999998 4455666 566788899999999999999998864
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.74 E-value=8.9e-15 Score=135.22 Aligned_cols=291 Identities=9% Similarity=-0.030 Sum_probs=231.3
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 84 (410)
|+..|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++.|...++.+++.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 56788899999999999999999999998753 4467899999999999999999999999999875 447789999999
Q ss_pred HHHhcCCHHHHHHHHHhcccC------ChhhHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 040371 85 MYSKCGKIQMAKEVFDTVQRN------DVSVWNAM------------ISGVAIHGLAADASAIFTKMEMFNVLPDSITFL 146 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~~------~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 146 (410)
.|.+.|++++|...|++..+. +...|..+ ...+...|++++|++.|+++.... +.+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999988643 23344444 578889999999999999998753 34677888
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHH---------
Q 040371 147 GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPD-VVVWRA--------- 215 (410)
Q Consensus 147 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~--------- 215 (410)
.+...+...|++++|...++.+.+. .+.+...+..+...|...|++++|...+++. ...|+ ...|..
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHH
Confidence 8999999999999999999999853 3446789999999999999999999999887 33343 333332
Q ss_pred ---HHHHHHhcCchhHHHHH---HHhhccCCCc----hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCCceeEEEECC
Q 040371 216 ---LLSACRTFKRLELGEVA---IVNISRLMGG----DYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAG 285 (410)
Q Consensus 216 ---li~~~~~~g~~~~a~~~---~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~ 285 (410)
+...+...|++++|... ..+..|.++. .+..+..+|.+.|++++|.+.+++..+.. |+....|..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~--- 311 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME--PDNVNALKD--- 311 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccHHHHHH---
Confidence 25568899999999999 4455566543 35568899999999999999999987752 332222321
Q ss_pred EEEEEEeCCCCCccHHHHHHHHHH
Q 040371 286 VIHQFKAGDRSHPEAQAIDKILGS 309 (410)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~l~~ 309 (410)
+...+...|+.++|...+++
T Consensus 312 ----~~~~~~~~g~~~~A~~~~~~ 331 (359)
T 3ieg_A 312 ----RAEAYLIEEMYDEAIQDYEA 331 (359)
T ss_dssp ----HHHHHHHTTCHHHHHHHHHH
T ss_pred ----HHHHHHHcCCHHHHHHHHHH
Confidence 12223456788888888874
No 18
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.2e-15 Score=148.59 Aligned_cols=297 Identities=9% Similarity=-0.047 Sum_probs=236.8
Q ss_pred CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCC---------
Q 040371 3 DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIE--------- 73 (410)
Q Consensus 3 ~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~--------- 73 (410)
.||..+|..+..+|.+.|++++|+..|+++.+.+ +.+..+|..+..++...|++++|...++.+.+.+..
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 3788999999999999999999999999998853 446679999999999999999999999999876521
Q ss_pred ---------------------------------------------------------------------ccHHHHHHHHH
Q 040371 74 ---------------------------------------------------------------------LNFILSAALID 84 (410)
Q Consensus 74 ---------------------------------------------------------------------~~~~~~~~li~ 84 (410)
.+...+..+..
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 11333344444
Q ss_pred HHHh---cCCHHHHHHHHHhccc----------------C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 040371 85 MYSK---CGKIQMAKEVFDTVQR----------------N-DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSIT 144 (410)
Q Consensus 85 ~y~~---~g~~~~A~~~f~~m~~----------------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 144 (410)
.+.. .|++++|...|+++.+ + +..+|..+...|...|++++|+..|+++.... |+..+
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~ 272 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNS 272 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHH
Confidence 4443 8999999999998765 2 35688899999999999999999999998864 44778
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 040371 145 FLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRT 222 (410)
Q Consensus 145 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~ 222 (410)
+..+...+...|++++|...++.+.+. .+.+...+..+...|...|++++|...+++. ...| +...|..+...+..
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 350 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR 350 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH
Confidence 888999999999999999999998853 3346778999999999999999999999987 3344 56788899999999
Q ss_pred cCchhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCC----ceeEEEECCEEEEEEeCCC
Q 040371 223 FKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQ----GKSWLELAGVIHQFKAGDR 295 (410)
Q Consensus 223 ~g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~s~~~~~~~~~~~~~~~~ 295 (410)
.|++++|... ..+..|.++..+..+...|.+.|++++|...++++.+..-.... ...|.. +...+.
T Consensus 351 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-------l~~~~~ 423 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVG-------KATLLT 423 (514)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHH-------HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHH-------HHHHHh
Confidence 9999999999 45667888889999999999999999999999988664211100 001211 112234
Q ss_pred C---CccHHHHHHHHHHHH
Q 040371 296 S---HPEAQAIDKILGSLI 311 (410)
Q Consensus 296 ~---~~~~~~~~~~l~~l~ 311 (410)
. .|+.++|...+++..
T Consensus 424 ~~~~~~~~~~A~~~~~~a~ 442 (514)
T 2gw1_A 424 RNPTVENFIEATNLLEKAS 442 (514)
T ss_dssp TSCCTTHHHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHH
Confidence 4 788899998888543
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.70 E-value=2.8e-17 Score=153.38 Aligned_cols=263 Identities=11% Similarity=0.088 Sum_probs=124.1
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM 85 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 85 (410)
..+|+.|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|+..++...+. .+++.+.+.|+.+
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~ 103 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHH
Confidence 35999999999999999999999965 357889999999999999999999988888774 4568889999999
Q ss_pred HHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 040371 86 YSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYF 165 (410)
Q Consensus 86 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 165 (410)
|.|+|+++++.++|+. |+..+|+.+...|...|++++|...|..+ ..|..+..++.+.|++++|.+.+
T Consensus 104 Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~ 171 (449)
T 1b89_A 104 LAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGA 171 (449)
T ss_dssp -----CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999988864 77789999999999999999999999977 37899999999999999999999
Q ss_pred HHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHH---HhhccCCCc
Q 040371 166 DHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI---VNISRLMGG 242 (410)
Q Consensus 166 ~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~---~~~~~~~~~ 242 (410)
..+. ++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|.+++|..++ ..+++....
T Consensus 172 ~KA~-------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~ 242 (449)
T 1b89_A 172 RKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEELITMLEAALGLERAHMG 242 (449)
T ss_dssp HHHT-------CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHH
T ss_pred HHcC-------CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHH
Confidence 9872 6889999999999999999998777766555544 446888999999999998883 344444556
Q ss_pred hHHHHHHHHHhc--CChhHHHHHHHHHHhCCCcC-----CCceeEEEECCEEEEEEeCCCCCccHHHHHHH
Q 040371 243 DYVLLSNMYCYL--KRWDTAENVREIMKKKGVRK-----SQGKSWLELAGVIHQFKAGDRSHPEAQAIDKI 306 (410)
Q Consensus 243 ~~~~l~~~~~~~--g~~~~a~~~~~~m~~~g~~~-----~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (410)
.|.-|.-+|++- ++..+..+.|. .+-+++| +...-|.++ +.-|...++.+.|...
T Consensus 243 ~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~-------~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 243 MFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAEL-------VFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHH-------HHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHH-------HHHHHhhchHHHHHHH
Confidence 778888888765 34444444443 2334544 333445431 1223445666666554
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.70 E-value=1.4e-14 Score=132.42 Aligned_cols=250 Identities=10% Similarity=0.015 Sum_probs=209.3
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG-ALNHAYWVHNLIIEKKIELNFILSAALI 83 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li 83 (410)
+...+..++..+.+.|++++|+.+|+++.+.. +.+...+..+...+...| ++++|.+.++.+.+.. +.+..++..+.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 132 (330)
T 3hym_B 55 HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYG 132 (330)
T ss_dssp CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHH
T ss_pred ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 44567778899999999999999999998753 446778999999999999 9999999999999875 44678899999
Q ss_pred HHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 040371 84 DMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE 160 (410)
Q Consensus 84 ~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 160 (410)
..|...|++++|...|++..+ .+..+|..+...|...|++++|.+.|++..... +.+..++..+...+...|++++
T Consensus 133 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 211 (330)
T 3hym_B 133 HSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKT 211 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHH
Confidence 999999999999999998763 346788889999999999999999999998753 3457788899999999999999
Q ss_pred HHHHHHHhhhhcC-------CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHH
Q 040371 161 GRKYFDHMRSRYS-------IQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGEV 231 (410)
Q Consensus 161 a~~~~~~m~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~ 231 (410)
|...|+.+.+... .+.....+..+...|.+.|++++|...+++. ...| +...|..+...+...|++++|..
T Consensus 212 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 291 (330)
T 3hym_B 212 AEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVD 291 (330)
T ss_dssp HHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHH
Confidence 9999999875321 1334678999999999999999999999987 3334 56788999999999999999999
Q ss_pred H---HHhhccCCCchHHHHHHHH-HhcCCh
Q 040371 232 A---IVNISRLMGGDYVLLSNMY-CYLKRW 257 (410)
Q Consensus 232 ~---~~~~~~~~~~~~~~l~~~~-~~~g~~ 257 (410)
. ..+..|.++..+..+..++ ...|+.
T Consensus 292 ~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 292 YFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 9 4456677777788888877 455554
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.70 E-value=2.2e-15 Score=140.35 Aligned_cols=254 Identities=11% Similarity=0.028 Sum_probs=197.9
Q ss_pred HHHHcCCHhHHHH-HHHHHHHCCC-CC--CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 040371 15 GFVRNARFDEALR-FFREMLSSKV-EP--DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCG 90 (410)
Q Consensus 15 ~~~~~g~~~~a~~-l~~~m~~~g~-~p--d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 90 (410)
+|...|++++|++ .|++...... .| +...+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3445678888888 7776554211 11 34567888999999999999999999999875 557889999999999999
Q ss_pred CHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHH
Q 040371 91 KIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLG---------------LLTAC 152 (410)
Q Consensus 91 ~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~---------------ll~a~ 152 (410)
++++|...|++..+ .+..+|..+...|...|++++|++.|+++...... +...+.. .+..+
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999998763 46789999999999999999999999999885422 2222211 23444
Q ss_pred HccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHH
Q 040371 153 SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGE 230 (410)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~ 230 (410)
...|++++|..+|+.+.+...-.++..++..+...|.+.|++++|...+++. ...| +..+|..+...+...|++++|.
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4889999999999999865222225788999999999999999999999987 3345 5788999999999999999999
Q ss_pred HH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040371 231 VA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 231 ~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 270 (410)
.. ..+..|.++..+..+..+|.+.|++++|...+++..+.
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99 45667888889999999999999999999999988764
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.69 E-value=2e-17 Score=154.26 Aligned_cols=218 Identities=12% Similarity=0.156 Sum_probs=95.4
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 040371 18 RNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE 97 (410)
Q Consensus 18 ~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 97 (410)
+.|+.++|.++++++ +++.+|..+..++.+.|++++|.+.|.+ .+|...|..++..+...|++++|++
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 568899999999987 2345999999999999999999999964 3578899999999999999999999
Q ss_pred HHHhccc--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCC
Q 040371 98 VFDTVQR--NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ 175 (410)
Q Consensus 98 ~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 175 (410)
.++...+ +++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..+
T Consensus 83 yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 83 YLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 7776553 456789999999999999999998885 478889999999999999999999999977
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCchHHHHHHHHHhcC
Q 040371 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLK 255 (410)
Q Consensus 176 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 255 (410)
..|..|++++.+.|++++|.+.+++++ +..+|..++.+|...|+++.|......+. ..+.....++..|.+.|
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA~---~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G 221 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKAN---STRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRG 221 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHHT---CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTT
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHcC---CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCC
Confidence 369999999999999999999999983 89999999999999999999988844443 33334557899999999
Q ss_pred ChhHHHHHHHHHH
Q 040371 256 RWDTAENVREIMK 268 (410)
Q Consensus 256 ~~~~a~~~~~~m~ 268 (410)
++++|..+++...
T Consensus 222 ~~eEai~lLe~aL 234 (449)
T 1b89_A 222 YFEELITMLEAAL 234 (449)
T ss_dssp CHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998764
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=4.2e-15 Score=138.59 Aligned_cols=228 Identities=12% Similarity=-0.024 Sum_probs=189.9
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHH
Q 040371 40 DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISG 116 (410)
Q Consensus 40 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~ 116 (410)
+...+..+...+.+.|++++|...++.+++.. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34458889999999999999999999999875 55789999999999999999999999998763 357899999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 040371 117 VAIHGLAADASAIFTKMEMFNVLPDS-----------ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMV 185 (410)
Q Consensus 117 ~~~~g~~~~A~~l~~~m~~~g~~p~~-----------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li 185 (410)
|...|++++|+..|+++... .|+. ..+..+...+...|++++|..+|+.+.+...-.++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999874 3332 2233457788999999999999999987532223688999999
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHH
Q 040371 186 DLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTA 260 (410)
Q Consensus 186 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a 260 (410)
..|.+.|++++|.+.|++. ...| +..+|..+...+...|++++|... ..+..|.++.++..+..+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 3344 678999999999999999999999 5566788888999999999999999999
Q ss_pred HHHHHHHHhC
Q 040371 261 ENVREIMKKK 270 (410)
Q Consensus 261 ~~~~~~m~~~ 270 (410)
...+++..+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 24
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.69 E-value=2.1e-14 Score=140.77 Aligned_cols=259 Identities=11% Similarity=0.028 Sum_probs=201.2
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMY 86 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 86 (410)
..|..+...|.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|.+.++.+++.+ +.+..++..+...|
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 456677777777778888888777777643 3466677777777777778888877777777764 44667777777777
Q ss_pred HhcCCHHHHHHHHHhc----------------------------------------------------------------
Q 040371 87 SKCGKIQMAKEVFDTV---------------------------------------------------------------- 102 (410)
Q Consensus 87 ~~~g~~~~A~~~f~~m---------------------------------------------------------------- 102 (410)
.+.|++++|...|+.+
T Consensus 104 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 7777777777666322
Q ss_pred ---------------------------------------------cc--CC--------hhhHHHHHHHHHHcCChHHHH
Q 040371 103 ---------------------------------------------QR--ND--------VSVWNAMISGVAIHGLAADAS 127 (410)
Q Consensus 103 ---------------------------------------------~~--~~--------~~~~~~li~~~~~~g~~~~A~ 127 (410)
.+ |+ ..+|..+...+...|++++|+
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 11 11 124555667788889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 040371 128 AIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TM 206 (410)
Q Consensus 128 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 206 (410)
..|++.... .|+..++..+...+...|++++|...|+.+.+. .+.+..+|..+...|...|++++|...+++. ..
T Consensus 264 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 264 VLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 999999874 566778888888999999999999999998864 2335778999999999999999999999987 33
Q ss_pred CC-CHHHHHHHHHHHHhcCchhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 040371 207 EP-DVVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKG 271 (410)
Q Consensus 207 ~p-~~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 271 (410)
.| +...|..+...+...|++++|... ..+..|.++..+..+...|...|++++|.+.+++..+..
T Consensus 340 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 340 NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 34 467888899999999999999999 556678888899999999999999999999999887643
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=6.3e-15 Score=133.26 Aligned_cols=243 Identities=8% Similarity=-0.004 Sum_probs=172.5
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 040371 13 IGGFVRNARFDEALRFFREMLSSKVEPDK--FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCG 90 (410)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 90 (410)
|.-....|++.+|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+...+..+...|.+.|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3445567888888888776543 34443 3445667788888888888765543 23566777788888888888
Q ss_pred CHHHHHHHHHhccc----C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 040371 91 KIQMAKEVFDTVQR----N-DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYF 165 (410)
Q Consensus 91 ~~~~A~~~f~~m~~----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 165 (410)
+.++|.+.|+++.. | +...+..+...|.+.|++++|++.|++ +.+...+..+...+.+.|++++|...|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88888888887642 3 455666677788888888888888876 356677777888888888888888888
Q ss_pred HHhhhhcCCCCChhH---HHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhHHHHH---HHhhc
Q 040371 166 DHMRSRYSIQPQLEH---YGAMVDLLGRAGHIEEAYGLITSM-TME-PDVVVWRALLSACRTFKRLELGEVA---IVNIS 237 (410)
Q Consensus 166 ~~m~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~~---~~~~~ 237 (410)
+.+.+. .|+... ..+++..+...|++++|..+|+++ ... .+...|+.+..++...|++++|+.. ..+..
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888754 344321 123334444557888888888887 222 3677788888888888888888888 45667
Q ss_pred cCCCchHHHHHHHHHhcCChhH-HHHHHHHHHhC
Q 040371 238 RLMGGDYVLLSNMYCYLKRWDT-AENVREIMKKK 270 (410)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 270 (410)
|.++.++..++..+...|+.++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 8888888888888888888865 56777776654
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.67 E-value=2.2e-14 Score=129.67 Aligned_cols=241 Identities=9% Similarity=0.011 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCC-CccHHHHHHHHHHH
Q 040371 8 SWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKI-ELNFILSAALIDMY 86 (410)
Q Consensus 8 ~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y 86 (410)
..-.+..+|...|++++|+..++. .-+|+..++..+...+...++.+.|.+.++.++..+. +.+..++..+...|
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~ 111 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIY 111 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 445678999999999999987754 2466778889999999999999999999999998774 44677888888999
Q ss_pred HhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHccCCHHHHHH
Q 040371 87 SKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITF---LGLLTACSHCGLVEEGRK 163 (410)
Q Consensus 87 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~ 163 (410)
.+.|++++|.+.|++ ..+...+..+...|.+.|++++|.+.|+++.+. .|+.... ...+..+...|++++|..
T Consensus 112 ~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~ 187 (291)
T 3mkr_A 112 FYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYY 187 (291)
T ss_dssp HHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHH
Confidence 999999999999999 467889999999999999999999999999886 3654321 123344455699999999
Q ss_pred HHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhH-HHHH---HHhhc
Q 040371 164 YFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLEL-GEVA---IVNIS 237 (410)
Q Consensus 164 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~-a~~~---~~~~~ 237 (410)
+|+++.+. .+.+...++.+..+|.+.|++++|...|++. ...| +..++..++..+...|+.++ +.++ +.+..
T Consensus 188 ~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 188 IFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999975 3557889999999999999999999999996 4456 67789999999999999876 4555 55667
Q ss_pred cCCCchHHHHHHHHHhcCChhHHHH
Q 040371 238 RLMGGDYVLLSNMYCYLKRWDTAEN 262 (410)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~~~~a~~ 262 (410)
|.++. +.+...+.+.++++..
T Consensus 266 P~~~~----~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 266 RSHPF----IKEYRAKENDFDRLVL 286 (291)
T ss_dssp TTCHH----HHHHHHHHHHHHHHHH
T ss_pred CCChH----HHHHHHHHHHHHHHHH
Confidence 77653 3345555555655544
No 27
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=1.5e-13 Score=118.62 Aligned_cols=195 Identities=15% Similarity=0.072 Sum_probs=155.6
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 040371 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALI 83 (410)
Q Consensus 4 ~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 83 (410)
++...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++.++.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 356788999999999999999999999998753 4467889999999999999999999999999875 55788899999
Q ss_pred HHHHhc-----------CCHHHHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040371 84 DMYSKC-----------GKIQMAKEVFDTVQR--N-DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLL 149 (410)
Q Consensus 84 ~~y~~~-----------g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 149 (410)
..|.+. |++++|...|++..+ | +...|..+...|...|++++|+..|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 999999 999999999988763 3 56788889999999999999999999998876 6778888899
Q ss_pred HHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 150 ~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
.++...|++++|...|+...+. -+.+...+..+...+.+.|++++|...|++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999998853 2335678888889999999999999888765
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.3e-13 Score=121.28 Aligned_cols=216 Identities=13% Similarity=0.026 Sum_probs=165.8
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCC--cc----HHHH
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIE--LN----FILS 79 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~--~~----~~~~ 79 (410)
...|..+...|.+.|++++|+..|++..+.. ++..++..+..++...|++++|...+..+++.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4578889999999999999999999998776 77888999999999999999999999988775311 11 5788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCH
Q 040371 80 AALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLV 158 (410)
Q Consensus 80 ~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~ 158 (410)
..+...|.+.|++++|...|++....+.. ...+...|++++|...++++... .| +...+..+...+...|++
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCH
Confidence 88889999999999999999887642111 23466678888888888888774 33 455677777888888888
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHH
Q 040371 159 EEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGEVA 232 (410)
Q Consensus 159 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~ 232 (410)
++|...|+.+.+. .+.+...|..+...|.+.|++++|...+++. ...| +...|..+...+...|++++|...
T Consensus 156 ~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 156 PNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888888888753 2335677888888888888888888888776 3333 456677777777777777777766
No 29
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=1.6e-13 Score=122.06 Aligned_cols=242 Identities=10% Similarity=-0.087 Sum_probs=190.5
Q ss_pred HHcCCHhHHHHHHHHHHHCCC--CC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH
Q 040371 17 VRNARFDEALRFFREMLSSKV--EP-DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQ 93 (410)
Q Consensus 17 ~~~g~~~~a~~l~~~m~~~g~--~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 93 (410)
...|++++|+..|+++.+... +| +..++..+..++...|++++|...++.+++.. +.+..++..+...|.+.|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 346889999999999987632 12 45688889999999999999999999999875 457889999999999999999
Q ss_pred HHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 040371 94 MAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS 170 (410)
Q Consensus 94 ~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 170 (410)
+|.+.|++..+ .+..+|..+...|.+.|++++|...|+++.+. .|+.......+..+...|++++|...+.....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999998764 36789999999999999999999999999874 45555555556666778999999999988875
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCchhHHHHHHHhhccCCCchH
Q 040371 171 RYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPD-----VVVWRALLSACRTFKRLELGEVAIVNISRLMGGDY 244 (410)
Q Consensus 171 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 244 (410)
. .+++...+. ++..+...+..++|...+++. ...|+ ..+|..+...+...|++++|...+.+....++..+
T Consensus 173 ~--~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 K--SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp H--SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred c--CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 4 234444444 777788888899999999887 33332 57788888999999999999999554444444445
Q ss_pred HHHHHHHHhcCChhHHHHHH
Q 040371 245 VLLSNMYCYLKRWDTAENVR 264 (410)
Q Consensus 245 ~~l~~~~~~~g~~~~a~~~~ 264 (410)
.....++...|++++|.+.+
T Consensus 250 ~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhhHHHH
Confidence 55567788888888887765
No 30
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.59 E-value=5.4e-13 Score=130.67 Aligned_cols=245 Identities=10% Similarity=0.006 Sum_probs=202.4
Q ss_pred CCHhHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 040371 20 ARFDEALRFFREMLSSKVEPD--------KFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK 91 (410)
Q Consensus 20 g~~~~a~~l~~~m~~~g~~pd--------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 91 (410)
|++++|+.+|+++.+. .|+ ..++..+...+...|+++.|...+..+.+.. |+..++..+...|.+.|+
T Consensus 216 ~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 291 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKEN 291 (537)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcC
Confidence 5899999999999874 343 2356667778888999999999999999874 558889999999999999
Q ss_pred HHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 040371 92 IQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHM 168 (410)
Q Consensus 92 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 168 (410)
+++|...|++..+ .+..+|..+...|...|++++|++.|++..... +.+..++..+...+...|++++|..+|+.+
T Consensus 292 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998763 367789999999999999999999999998753 224677888999999999999999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----C----CCCCHHHHHHHHHHHHhc----------CchhHHH
Q 040371 169 RSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM----T----MEPDVVVWRALLSACRTF----------KRLELGE 230 (410)
Q Consensus 169 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~----~~p~~~~~~~li~~~~~~----------g~~~~a~ 230 (410)
.+. .+.+...+..+...|.+.|++++|...|++. + .......+..+...+... |++++|.
T Consensus 371 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~ 448 (537)
T 3fp2_A 371 KLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAI 448 (537)
T ss_dssp HHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHH
T ss_pred HHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHH
Confidence 864 2345678999999999999999999999886 1 111223344445566777 9999999
Q ss_pred HH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 040371 231 VA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKG 271 (410)
Q Consensus 231 ~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 271 (410)
.. ..+..|.++..+..+..+|.+.|++++|.+.+++..+..
T Consensus 449 ~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 449 KLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99 556678888899999999999999999999999987653
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.2e-13 Score=119.77 Aligned_cols=217 Identities=9% Similarity=-0.053 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc--C-C-------hhhH
Q 040371 41 KFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR--N-D-------VSVW 110 (410)
Q Consensus 41 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~-------~~~~ 110 (410)
...|..+...+...|++++|...+..+++.. .+..++..+...|.+.|++++|...|++..+ | + ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4578888899999999999999999999987 7889999999999999999999999998763 2 1 5789
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh
Q 040371 111 NAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGR 190 (410)
Q Consensus 111 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 190 (410)
..+...|...|++++|+..|++.... .|+. ..+...|++++|...++.+... .+.+...+..+...|..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHH
Confidence 99999999999999999999999884 4553 3456678899999999998852 22346788899999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHH
Q 040371 191 AGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVRE 265 (410)
Q Consensus 191 ~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 265 (410)
.|++++|...+++. ...| +..+|..+...+...|++++|... ..+..|.++..+..+..+|.+.|++++|.+.++
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999987 3334 678899999999999999999999 556678888889999999999999999999999
Q ss_pred HHHhC
Q 040371 266 IMKKK 270 (410)
Q Consensus 266 ~m~~~ 270 (410)
+..+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87654
No 32
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=6.8e-13 Score=116.63 Aligned_cols=194 Identities=10% Similarity=-0.034 Sum_probs=141.9
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM 85 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 85 (410)
...|..+...|...|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.++.+.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4567777888888888888888888877642 3356677777788888888888888888877764 3466777778888
Q ss_pred HHhcCCHHHHHHHHHhccc----C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 040371 86 YSKCGKIQMAKEVFDTVQR----N-DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE 160 (410)
Q Consensus 86 y~~~g~~~~A~~~f~~m~~----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 160 (410)
|.+.|++++|.+.|+++.. | +...|..+...|.+.|++++|.+.|++..... +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888877654 2 34567777777788888888888888777643 2245667777777778888888
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 161 GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 161 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
|..+++.+.+ ..+.+...+..+...|.+.|++++|.+.++++
T Consensus 194 A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 194 ARQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888877764 22345566777777777888888887777776
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.58 E-value=4e-13 Score=122.53 Aligned_cols=226 Identities=12% Similarity=-0.019 Sum_probs=187.8
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHH
Q 040371 40 DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISG 116 (410)
Q Consensus 40 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~ 116 (410)
+...+......+...|++++|..+++.+++.. +.+..++..+...|.+.|++++|.+.|++..+ .+..+|..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 34456777888999999999999999999875 45788999999999999999999999998763 367789999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHH--------------HH-HHHccCCHHHHHHHHHHhhhhcCCCCChhH
Q 040371 117 VAIHGLAADASAIFTKMEMFNVLPDS-ITFLGL--------------LT-ACSHCGLVEEGRKYFDHMRSRYSIQPQLEH 180 (410)
Q Consensus 117 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~l--------------l~-a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 180 (410)
|...|++++|++.|+++... .|+. ..+..+ .. .+...|++++|..+++.+.+. .+.+...
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 174 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQL 174 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHH
Confidence 99999999999999999875 3332 223222 22 377889999999999999864 2336788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHH---HHhhccCCCchHHHHHHHHHhcC
Q 040371 181 YGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLK 255 (410)
Q Consensus 181 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g 255 (410)
+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|... ..+..|.+...+..+...|.+.|
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999987 3344 578899999999999999999999 45567778888999999999999
Q ss_pred ChhHHHHHHHHHHhC
Q 040371 256 RWDTAENVREIMKKK 270 (410)
Q Consensus 256 ~~~~a~~~~~~m~~~ 270 (410)
++++|.+.+++..+.
T Consensus 255 ~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYM 269 (327)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999988764
No 34
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=6.3e-13 Score=114.27 Aligned_cols=208 Identities=12% Similarity=0.006 Sum_probs=164.3
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 84 (410)
+...|..+...|...|++++|+..|+++.+.. +.+...+..+..++...|+++.|.+.++.+.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 46678899999999999999999999988753 4467788888899999999999999999998874 446778888999
Q ss_pred HHHhc-CCHHHHHHHHHhccc--CC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 040371 85 MYSKC-GKIQMAKEVFDTVQR--ND---VSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLV 158 (410)
Q Consensus 85 ~y~~~-g~~~~A~~~f~~m~~--~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 158 (410)
.|... |++++|...|+++.+ .+ ...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999988765 22 4678888888899999999999998887753 23467778888888889999
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 040371 159 EEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDVVVWRAL 216 (410)
Q Consensus 159 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 216 (410)
++|..+++.+.+. .-..+...+..+...+...|+.++|..+++.+ ...|+......+
T Consensus 164 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 164 GDADYYFKKYQSR-VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHHHHHHHHHH-HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999888753 11145667777778888888888888888876 345654444333
No 35
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=3.7e-13 Score=117.41 Aligned_cols=196 Identities=10% Similarity=0.084 Sum_probs=142.2
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 040371 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALI 83 (410)
Q Consensus 4 ~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 83 (410)
.+..+|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345678888888999999999999999988753 4467788888889999999999999999988874 44678888889
Q ss_pred HHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 040371 84 DMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEE 160 (410)
Q Consensus 84 ~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 160 (410)
..|.+.|++++|.+.|++..+ .+...|..+...|.+.|++++|+..|+++.... +.+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999987653 366788888888889999999999998887652 3356777788888888899999
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 161 GRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 161 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
|...|+.+.+. .+.+...+..+...|.+.|++++|.+.+++.
T Consensus 178 A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 178 ALSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99998888753 2334677888888888888888888888876
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.51 E-value=3.5e-12 Score=113.28 Aligned_cols=232 Identities=10% Similarity=-0.043 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcc--HHHHHHHHHH
Q 040371 8 SWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELN--FILSAALIDM 85 (410)
Q Consensus 8 ~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~ 85 (410)
.+......+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|.+.++.+++.+-.++ ...+..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 44556778888999999999999998753 33455788888899999999999999999988432222 3457888889
Q ss_pred HHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHH
Q 040371 86 YSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEG 161 (410)
Q Consensus 86 y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 161 (410)
|.+.|++++|.+.|++..+ .+..+|..+...|...|++++|++.|++..+. .| +...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987753 35678888888899999999999999888765 34 445555555244455689999
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHHhcCchhH
Q 040371 162 RKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGH---IEEAYGLITSM----TMEPD------VVVWRALLSACRTFKRLEL 228 (410)
Q Consensus 162 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m----~~~p~------~~~~~~li~~~~~~g~~~~ 228 (410)
...|+.+.+. .+.+...+..+...+...|+ +++|...+++. ...|+ ...|..+-..+...|++++
T Consensus 162 ~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 162 DSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999888753 12235667777777777776 66666666554 11122 1344555555566666666
Q ss_pred HHHH---HHhhccCCCchH
Q 040371 229 GEVA---IVNISRLMGGDY 244 (410)
Q Consensus 229 a~~~---~~~~~~~~~~~~ 244 (410)
|... ..++.|.++...
T Consensus 240 A~~~~~~al~~~p~~~~a~ 258 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAI 258 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhcCccHHHHH
Confidence 6665 334445444333
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.51 E-value=1.1e-12 Score=113.19 Aligned_cols=194 Identities=12% Similarity=0.017 Sum_probs=113.7
Q ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc--C-ChhhHHHHH
Q 040371 38 EPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR--N-DVSVWNAMI 114 (410)
Q Consensus 38 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li 114 (410)
+++...+..+..++...|++++|...++..++.. +.+...+..+...|.+.|++++|...|++..+ | +...|..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4456667777777777777777777777777654 44566777777777777777777777776542 2 455666677
Q ss_pred HHHHHc-----------CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHH
Q 040371 115 SGVAIH-----------GLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182 (410)
Q Consensus 115 ~~~~~~-----------g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 182 (410)
..|.+. |++++|+..|++..+. .| +...+..+..++...|++++|...|+...+. . .+...+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~ 155 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHH
Confidence 777766 6666666666666553 33 3445555666666666666666666666643 3 4555666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCchHHHHHHHHHhcCChhHHHH
Q 040371 183 AMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAEN 262 (410)
Q Consensus 183 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 262 (410)
.+...|...|++++|...|++. .+..|.++..+..+..+|.+.|++++|..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~a-----------------------------l~~~P~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKA-----------------------------LEQAPKDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH-----------------------------HHHSTTCHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHcCCHHHHHHHHHHH-----------------------------HHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence 6666666666666666666554 23345555555566666666666666666
Q ss_pred HHHH
Q 040371 263 VREI 266 (410)
Q Consensus 263 ~~~~ 266 (410)
.+++
T Consensus 207 ~~~~ 210 (217)
T 2pl2_A 207 AAAL 210 (217)
T ss_dssp ----
T ss_pred HHHH
Confidence 5554
No 38
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=8e-12 Score=109.70 Aligned_cols=189 Identities=13% Similarity=0.046 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHH
Q 040371 41 KFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGV 117 (410)
Q Consensus 41 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~ 117 (410)
...+..+...+...|++++|.+.++.+++.. +.+..++..+...|.+.|++++|.+.|++..+ .+...|..+...|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 3456666677777777777777777777654 34566777777777777777777777776542 2556677777777
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 040371 118 AIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196 (410)
Q Consensus 118 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 196 (410)
...|++++|++.|+++...+..| +...+..+...+...|++++|...|+.+.+. . +.+...+..+...|.+.|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-N-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777776633344 3455666666777777777777777776643 1 2245666677777777777777
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHH
Q 040371 197 AYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGEVA 232 (410)
Q Consensus 197 A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~ 232 (410)
|...+++. ...| +...+..+...+...|+.++|...
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 231 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASY 231 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 77777665 3333 344555555556666666666655
No 39
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=2.8e-12 Score=120.66 Aligned_cols=266 Identities=13% Similarity=0.032 Sum_probs=205.5
Q ss_pred CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHc----CCCc
Q 040371 3 DKDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPD----KFTFASVIYGCARLGALNHAYWVHNLIIEK----KIEL 74 (410)
Q Consensus 3 ~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~~ 74 (410)
++....|......+.+.|++++|+..|++..+.. +.+ ...+..+..++...|+++.|...++++++. +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3456678888899999999999999999998753 223 356788889999999999999999987654 2222
Q ss_pred -cHHHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC----hhhHHHHHHHHHHcCC--------------------hH
Q 040371 75 -NFILSAALIDMYSKCGKIQMAKEVFDTVQR-----ND----VSVWNAMISGVAIHGL--------------------AA 124 (410)
Q Consensus 75 -~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~ 124 (410)
...++..+...|...|++++|...|++..+ ++ ..+|..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 356788899999999999999999987653 22 3488889999999999 99
Q ss_pred HHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHhcCCHH
Q 040371 125 DASAIFTKMEMF----NVLPD-SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ----LEHYGAMVDLLGRAGHIE 195 (410)
Q Consensus 125 ~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~ 195 (410)
+|++.|++.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999877542 21222 346778888999999999999999988753211222 337888999999999999
Q ss_pred HHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCchhHHHHHHH---hhccCC------CchHHHHHHHHHhcCChh
Q 040371 196 EAYGLITSM-T---MEPD----VVVWRALLSACRTFKRLELGEVAIV---NISRLM------GGDYVLLSNMYCYLKRWD 258 (410)
Q Consensus 196 ~A~~~~~~m-~---~~p~----~~~~~~li~~~~~~g~~~~a~~~~~---~~~~~~------~~~~~~l~~~~~~~g~~~ 258 (410)
+|...+++. . ..++ ..++..+...+...|++++|...+. ...+.. ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999998876 1 1112 4577888888999999999999832 222221 346778999999999999
Q ss_pred HHHHHHHHHHh
Q 040371 259 TAENVREIMKK 269 (410)
Q Consensus 259 ~a~~~~~~m~~ 269 (410)
+|.+.+++..+
T Consensus 325 ~A~~~~~~al~ 335 (406)
T 3sf4_A 325 QAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 40
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=9.8e-12 Score=106.72 Aligned_cols=190 Identities=11% Similarity=-0.026 Sum_probs=134.5
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHH
Q 040371 40 DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISG 116 (410)
Q Consensus 40 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~ 116 (410)
+...+..+...+...|++++|.+.++.+++.. +.+..++..+...|...|++++|.+.|++..+ .+..+|..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 45567777778888888888888888887764 44577777888888888888888888877653 356677777788
Q ss_pred HHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCH
Q 040371 117 VAIH-GLAADASAIFTKMEMFNVLPD-SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194 (410)
Q Consensus 117 ~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 194 (410)
|... |++++|+..|+++...+..|+ ...+..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCH
Confidence 8888 888888888888776333343 456667777777888888888888877753 122466777777778888888
Q ss_pred HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCchhHHHHH
Q 040371 195 EEAYGLITSM-TMEP--DVVVWRALLSACRTFKRLELGEVA 232 (410)
Q Consensus 195 ~~A~~~~~~m-~~~p--~~~~~~~li~~~~~~g~~~~a~~~ 232 (410)
++|...+++. ...| +...+..+...+...|+.+.+..+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 204 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEY 204 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 8887777765 2222 445555555556666766666666
No 41
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=1.8e-12 Score=122.52 Aligned_cols=263 Identities=10% Similarity=-0.035 Sum_probs=202.7
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHHc----C-CCccHH
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDK----FTFASVIYGCARLGALNHAYWVHNLIIEK----K-IELNFI 77 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g-~~~~~~ 77 (410)
..+..+...+.+.|++++|+..|++..+.. +.+. ..+..+..++...|+++.|...+++.++. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 345667788899999999999999998853 2233 46888889999999999999999988764 2 123467
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccC---------ChhhHHHHHHHHHHcCC-----------------hHHHHHHHH
Q 040371 78 LSAALIDMYSKCGKIQMAKEVFDTVQRN---------DVSVWNAMISGVAIHGL-----------------AADASAIFT 131 (410)
Q Consensus 78 ~~~~li~~y~~~g~~~~A~~~f~~m~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~l~~ 131 (410)
++..+...|...|++++|...|++..+. ...+|+.+...|...|+ +++|++.|+
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7889999999999999999999876531 24578889999999999 999999998
Q ss_pred HHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHH
Q 040371 132 KMEMF----NVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ----LEHYGAMVDLLGRAGHIEEAYGLIT 202 (410)
Q Consensus 132 ~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~ 202 (410)
+.... +..| ...++..+...+...|++++|...|+...+...-.++ ...+..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 87542 2122 2346778888999999999999999988753111112 2378889999999999999999998
Q ss_pred hC-CCC---C----CHHHHHHHHHHHHhcCchhHHHHHHH---hhccC------CCchHHHHHHHHHhcCChhHHHHHHH
Q 040371 203 SM-TME---P----DVVVWRALLSACRTFKRLELGEVAIV---NISRL------MGGDYVLLSNMYCYLKRWDTAENVRE 265 (410)
Q Consensus 203 ~m-~~~---p----~~~~~~~li~~~~~~g~~~~a~~~~~---~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 265 (410)
+. ... . ...++..+...+...|++++|...+. ...+. ...++..+..+|.+.|++++|.+.++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 76 111 1 24677888888999999999999832 22221 12367889999999999999999999
Q ss_pred HHHhC
Q 040371 266 IMKKK 270 (410)
Q Consensus 266 ~m~~~ 270 (410)
+..+.
T Consensus 368 ~al~~ 372 (411)
T 4a1s_A 368 QHLQL 372 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=5e-12 Score=118.36 Aligned_cols=241 Identities=9% Similarity=0.053 Sum_probs=193.6
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCC-HHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA-LNHAYWVHNLIIEKKIELNFILSAALID 84 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~ 84 (410)
...|+.+...+.+.|++++|+..|++.+... +-+...|..+..++...|+ +++|...++++++.. +.+..+|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4578889999999999999999999998753 3367789999999999996 999999999999975 457889999999
Q ss_pred HHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHHH
Q 040371 85 MYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH-CGLVEE 160 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~ 160 (410)
+|.+.|++++|+..|++..+ .+..+|+.+..++.+.|++++|+..|+++.+.. +-+...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999998864 467899999999999999999999999998853 2256788888888888 666577
Q ss_pred H-----HHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-------
Q 040371 161 G-----RKYFDHMRSRYSIQP-QLEHYGAMVDLLGRAG--HIEEAYGLITSMTMEP-DVVVWRALLSACRTFK------- 224 (410)
Q Consensus 161 a-----~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~li~~~~~~g------- 224 (410)
| ...|+...+. .| +...|+.+...|.+.| ++++|++.+.++...| +...+..+...+...|
T Consensus 254 A~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 7 4778887743 34 4678888888899888 6899999888875555 4567788888887764
Q ss_pred --chhHHHHH---H-HhhccCCCchHHHHHHHHH
Q 040371 225 --RLELGEVA---I-VNISRLMGGDYVLLSNMYC 252 (410)
Q Consensus 225 --~~~~a~~~---~-~~~~~~~~~~~~~l~~~~~ 252 (410)
.+++|..+ + .+.+|.....|..+...+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 25778877 3 4556666666666655544
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=5.8e-11 Score=105.79 Aligned_cols=215 Identities=10% Similarity=-0.059 Sum_probs=165.8
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHcCCCccHHHH
Q 040371 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCAR----LGALNHAYWVHNLIIEKKIELNFILS 79 (410)
Q Consensus 4 ~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~ 79 (410)
.+..++..+-..|.+.|++++|+..|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 356788888899999999999999999988733 55677888888888 999999999999998876 67788
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhcccC-ChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040371 80 AALIDMYSK----CGKIQMAKEVFDTVQRN-DVSVWNAMISGVAI----HGLAADASAIFTKMEMFNVLPDSITFLGLLT 150 (410)
Q Consensus 80 ~~li~~y~~----~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 150 (410)
..+..+|.. .|++++|.+.|++..+. +..++..+...|.. .+++++|++.|++..+.+ +...+..+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 888889998 99999999999877643 66788888888888 899999999999888865 4556666777
Q ss_pred HHHc----cCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 040371 151 ACSH----CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGR----AGHIEEAYGLITSM-TMEPDVVVWRALLSACR 221 (410)
Q Consensus 151 a~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~ 221 (410)
.+.. .+++++|...|+...+. + +...+..+...|.. .+++++|...|++. ... +...+..+-..+.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQY 229 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 7777 88999999999888753 2 45677788888888 88888888888775 222 2444444444444
Q ss_pred h----cCchhHHHHH
Q 040371 222 T----FKRLELGEVA 232 (410)
Q Consensus 222 ~----~g~~~~a~~~ 232 (410)
. .+++++|...
T Consensus 230 ~g~~~~~~~~~A~~~ 244 (273)
T 1ouv_A 230 NGEGVTRNEKQAIEN 244 (273)
T ss_dssp TTSSSSCCSTTHHHH
T ss_pred cCCCcccCHHHHHHH
Confidence 4 4455555444
No 44
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=4.1e-12 Score=115.83 Aligned_cols=264 Identities=13% Similarity=0.019 Sum_probs=202.2
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHc----CCC-ccH
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPD----KFTFASVIYGCARLGALNHAYWVHNLIIEK----KIE-LNF 76 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~-~~~ 76 (410)
...+......+.+.|++++|+..|++..+.. +.+ ...+..+...+...|+++.|.+.++...+. +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3456677788999999999999999998753 223 357788889999999999999999887654 222 236
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC----hhhHHHHHHHHHHcCC--------------------hHHHH
Q 040371 77 ILSAALIDMYSKCGKIQMAKEVFDTVQR-----ND----VSVWNAMISGVAIHGL--------------------AADAS 127 (410)
Q Consensus 77 ~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~ 127 (410)
.++..+...|...|++++|...|++..+ ++ ..+|..+...|...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 6788999999999999999999987642 22 3478888999999999 99999
Q ss_pred HHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHhcCCHHHHH
Q 040371 128 AIFTKMEMF----NVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ----LEHYGAMVDLLGRAGHIEEAY 198 (410)
Q Consensus 128 ~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~ 198 (410)
+.+++.... +..| ...++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999887542 2122 2346777888899999999999999987643111112 337888899999999999999
Q ss_pred HHHHhC-C---CCCC----HHHHHHHHHHHHhcCchhHHHHHHH---hhccCC------CchHHHHHHHHHhcCChhHHH
Q 040371 199 GLITSM-T---MEPD----VVVWRALLSACRTFKRLELGEVAIV---NISRLM------GGDYVLLSNMYCYLKRWDTAE 261 (410)
Q Consensus 199 ~~~~~m-~---~~p~----~~~~~~li~~~~~~g~~~~a~~~~~---~~~~~~------~~~~~~l~~~~~~~g~~~~a~ 261 (410)
..+++. . ..++ ..++..+...+...|++++|...+. ...+.. ..++..+...|.+.|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 998876 1 1112 4567778888999999999999832 222221 236778999999999999999
Q ss_pred HHHHHHHhC
Q 040371 262 NVREIMKKK 270 (410)
Q Consensus 262 ~~~~~m~~~ 270 (410)
+.+++..+.
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999988764
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.46 E-value=5.4e-12 Score=112.13 Aligned_cols=220 Identities=8% Similarity=-0.090 Sum_probs=173.0
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 84 (410)
+..+|..+...|...|++++|+..|++..+.. +.+..+|..+..++...|++++|...++.+++.. +.+..++..+..
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~ 119 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGI 119 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHH
Confidence 45689999999999999999999999998753 4468899999999999999999999999999874 446889999999
Q ss_pred HHHhcCCHHHHHHHHHhccc--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 040371 85 MYSKCGKIQMAKEVFDTVQR--NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGR 162 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 162 (410)
.|.+.|++++|...|+++.+ |+...+...+..+...|++++|+..|++..... +++...+ .++..+...+..++|.
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~ 197 (275)
T 1xnf_A 120 ALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLM 197 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHH
Confidence 99999999999999998863 444444555555677799999999998877652 3444444 4777788888999999
Q ss_pred HHHHHhhhhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHH
Q 040371 163 KYFDHMRSRYSIQPQ-----LEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDVVVWRALLSACRTFKRLELGEVAI 233 (410)
Q Consensus 163 ~~~~~m~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 233 (410)
..+....+. .|+ ...+..+...|.+.|++++|...|++. ...|+. +.....++...|++++|...+
T Consensus 198 ~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 198 ERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 999887642 221 578889999999999999999999987 556643 222344566677777776553
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.45 E-value=3.5e-12 Score=111.16 Aligned_cols=202 Identities=12% Similarity=0.058 Sum_probs=129.8
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHH
Q 040371 40 DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISG 116 (410)
Q Consensus 40 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~ 116 (410)
...+|..+...+...|+++.|...++.+++.. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 44566777777788888888888888887754 44677788888888888888888888887653 356677888888
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 040371 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196 (410)
Q Consensus 117 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 196 (410)
|...|++++|++.|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888877653 335666777777888888888888888887753 23356677777888888888888
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHH---HHhhccCCCchHH
Q 040371 197 AYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDYV 245 (410)
Q Consensus 197 A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~~ 245 (410)
|.+.+++. ...| +..+|..+...+...|++++|... ..+..|.++..+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 231 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALH 231 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHH
Confidence 88877776 2223 456666666677777777777766 3344454444333
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.45 E-value=7.8e-11 Score=104.91 Aligned_cols=223 Identities=10% Similarity=-0.061 Sum_probs=188.7
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHhcccC-ChhhHHHHH
Q 040371 40 DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSK----CGKIQMAKEVFDTVQRN-DVSVWNAMI 114 (410)
Q Consensus 40 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~~-~~~~~~~li 114 (410)
+..++..+...+...|++++|.+.+++..+.+ +...+..+..+|.. .|++++|...|++..+. +..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56678888889999999999999999999843 56788889999999 99999999999987643 678899999
Q ss_pred HHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 040371 115 SGVAI----HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH----CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186 (410)
Q Consensus 115 ~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 186 (410)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...|+...+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999998875 67788888889998 99999999999999864 4 5677888888
Q ss_pred HHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHhh-ccCCCchHHHHHHHHHh----
Q 040371 187 LLGR----AGHIEEAYGLITSMTMEPDVVVWRALLSACRT----FKRLELGEVAIVNI-SRLMGGDYVLLSNMYCY---- 253 (410)
Q Consensus 187 ~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~-~~~~~~~~~~l~~~~~~---- 253 (410)
.|.. .+++++|...|++.-...+...+..+-..+.. .+++++|...+.+. ...++..+..+..+|.+
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~ 234 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGV 234 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCc
Confidence 9998 99999999999987222366778888888888 99999999994332 22335678889999999
Q ss_pred cCChhHHHHHHHHHHhCCC
Q 040371 254 LKRWDTAENVREIMKKKGV 272 (410)
Q Consensus 254 ~g~~~~a~~~~~~m~~~g~ 272 (410)
.+++++|.+.+++..+.|-
T Consensus 235 ~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 235 TRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SCCSTTHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHHHHcCC
Confidence 9999999999999887653
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.44 E-value=2.8e-11 Score=107.36 Aligned_cols=225 Identities=9% Similarity=-0.050 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCh----hhHHHHHH
Q 040371 42 FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR--NDV----SVWNAMIS 115 (410)
Q Consensus 42 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~----~~~~~li~ 115 (410)
..+......+...|+++.|...++.+++.. +.+..++..+...|.+.|++++|...|++..+ ++. .+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345566778889999999999999999874 34566888999999999999999999998765 222 24889999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHH
Q 040371 116 GVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIE 195 (410)
Q Consensus 116 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 195 (410)
.|...|++++|++.|++..+.. +.+..++..+...+...|++++|...|+...+. .+.+...|..+...+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998853 235578889999999999999999999998853 2334667777773444455999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCc---hhHHHHH---HHhhc---cCC-----CchHHHHHHHHHhcCChhH
Q 040371 196 EAYGLITSM-TMEPD-VVVWRALLSACRTFKR---LELGEVA---IVNIS---RLM-----GGDYVLLSNMYCYLKRWDT 259 (410)
Q Consensus 196 ~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~---~~~a~~~---~~~~~---~~~-----~~~~~~l~~~~~~~g~~~~ 259 (410)
+|.+.|++. ...|+ ...+..+...+...|+ .++|... ..+.. |.. ...|..+...|.+.|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999987 44454 6777777788887787 7777776 22221 221 1467789999999999999
Q ss_pred HHHHHHHHHhC
Q 040371 260 AENVREIMKKK 270 (410)
Q Consensus 260 a~~~~~~m~~~ 270 (410)
|.+.+++..+.
T Consensus 240 A~~~~~~al~~ 250 (272)
T 3u4t_A 240 ADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999998764
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.40 E-value=1.8e-11 Score=114.54 Aligned_cols=226 Identities=12% Similarity=0.062 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC-HHHHHHHHHhccc---CChhhHHHHHHH
Q 040371 41 KFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK-IQMAKEVFDTVQR---NDVSVWNAMISG 116 (410)
Q Consensus 41 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~f~~m~~---~~~~~~~~li~~ 116 (410)
...|..+..++...|++++|.+.++++++.. +.+..+|+.+...|.+.|+ +++|+..|++... .+...|+.+...
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3577888888999999999999999999975 5578999999999999997 9999999998874 367899999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh-cCCHH
Q 040371 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGR-AGHIE 195 (410)
Q Consensus 117 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~-~g~~~ 195 (410)
|...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|...|+.+.+. -+-+...|+.+..+|.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999853 226788999999999999999999999999864 12357889999999999 67667
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--chhHHHHHHH--hhccCCCchHHHHHHHHHhcC---------
Q 040371 196 EA-----YGLITSM-TMEP-DVVVWRALLSACRTFK--RLELGEVAIV--NISRLMGGDYVLLSNMYCYLK--------- 255 (410)
Q Consensus 196 ~A-----~~~~~~m-~~~p-~~~~~~~li~~~~~~g--~~~~a~~~~~--~~~~~~~~~~~~l~~~~~~~g--------- 255 (410)
+| +..|++. .+.| +...|..+...+...| ++++|...+. +..|.++..+..|..+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 77 4667665 4556 5678988888888888 6888888744 445666667888999998874
Q ss_pred ChhHHHHHHHHH-HhC
Q 040371 256 RWDTAENVREIM-KKK 270 (410)
Q Consensus 256 ~~~~a~~~~~~m-~~~ 270 (410)
..++|.++++++ .+.
T Consensus 333 ~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 333 ILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 358999999998 443
No 50
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=2.7e-10 Score=103.58 Aligned_cols=232 Identities=14% Similarity=0.060 Sum_probs=173.8
Q ss_pred hhHHHHHHHHHHHc----CCH----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hhCCH-------HHHHHH
Q 040371 6 VVSWNSMIGGFVRN----ARF----DEALRFFREMLSSKVEPDKFTFASVIYGCA-------RLGAL-------NHAYWV 63 (410)
Q Consensus 6 ~~~~n~li~~~~~~----g~~----~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~-------~~~~~-------~~a~~~ 63 (410)
...|...+.--.++ ++. ++|+.+|++.+... +-+...|..+...+. ..|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 45688887766554 233 68889999998752 446678887777765 35775 899999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc--C-Chh-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 040371 64 HNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR--N-DVS-VWNAMISGVAIHGLAADASAIFTKMEMFNVL 139 (410)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 139 (410)
+++.++.-.+.+...|..++..+.+.|++++|+++|++..+ | +.. .|..+...+.+.|+.++|..+|++..+.. +
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p 165 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-R 165 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-T
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 99999842244677899999999999999999999998764 3 343 89999999999999999999999998753 2
Q ss_pred CCHHHHHHHHHHHH-ccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHH
Q 040371 140 PDSITFLGLLTACS-HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-T---MEP--DVVV 212 (410)
Q Consensus 140 p~~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~ 212 (410)
++...|........ ..|+.++|..+|+...+.. +.+...|..++..+.+.|++++|..+|++. . ..| ....
T Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 34444543333322 3699999999999988642 235788899999999999999999999887 2 344 3667
Q ss_pred HHHHHHHHHhcCchhHHHHH---HHhhccCCC
Q 040371 213 WRALLSACRTFKRLELGEVA---IVNISRLMG 241 (410)
Q Consensus 213 ~~~li~~~~~~g~~~~a~~~---~~~~~~~~~ 241 (410)
|..++......|+.+.|..+ ..+..|.+.
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 88888888888888888887 444555543
No 51
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.39 E-value=2.1e-09 Score=104.26 Aligned_cols=254 Identities=9% Similarity=-0.082 Sum_probs=174.1
Q ss_pred ChhHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHcCCCccH
Q 040371 5 DVVSWNSMIGGFVR----NARFDEALRFFREMLSSKVEPDKFTFASVIYGCAR----LGALNHAYWVHNLIIEKKIELNF 76 (410)
Q Consensus 5 ~~~~~n~li~~~~~----~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~ 76 (410)
|..++..+-..|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45566667777777 788888888888877654 55666777777777 778888888888887765 55
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHhcccC-ChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 040371 77 ILSAALIDMYSK----CGKIQMAKEVFDTVQRN-DVSVWNAMISGVAI----HGLAADASAIFTKMEMFNVLPDSITFLG 147 (410)
Q Consensus 77 ~~~~~li~~y~~----~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 147 (410)
..+..|..+|.. .+++++|.+.|++..+. +..++..+...|.. .++.++|++.|++..+.| +...+..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 666777777777 67888888888776543 55677777777776 677888888888777654 4556666
Q ss_pred HHHHHHc----cCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 040371 148 LLTACSH----CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGR----AGHIEEAYGLITSMTMEPDVVVWRALLSA 219 (410)
Q Consensus 148 ll~a~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~li~~ 219 (410)
+...+.. .++.++|...|+...+. + +...+..+...|.. .+++++|..+|++.-...+...+..+-..
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATS-G---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666666 67788888888777643 2 45566667777765 67777777777776222345555555555
Q ss_pred HHh----cCchhHHHHHHHh-hccCCCchHHHHHHHHHhc-----CChhHHHHHHHHHHhCC
Q 040371 220 CRT----FKRLELGEVAIVN-ISRLMGGDYVLLSNMYCYL-----KRWDTAENVREIMKKKG 271 (410)
Q Consensus 220 ~~~----~g~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~g 271 (410)
+.. .++.++|...+.+ ....++..+..|..+|... ++.++|...+++..+.|
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~ 326 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG 326 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC
Confidence 555 6777777776332 2234445566677777666 67777777777766654
No 52
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=4e-10 Score=108.46 Aligned_cols=264 Identities=11% Similarity=0.033 Sum_probs=191.4
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHC-----C--CCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcC------
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSS-----K--VEP-DKFTFASVIYGCARLGALNHAYWVHNLIIEKK------ 71 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~-----g--~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g------ 71 (410)
+..||.|-..|...|++++|++.|++..+. + ..| ...+|..+..++...|++++|...++++.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 457999999999999999999999887541 1 123 45689999999999999999999999887531
Q ss_pred C-CccHHHHHHHHHHHHhcC--CHHHHHHHHHhccc--C-ChhhHHHHHHH---HHHcCChHHHHHHHHHHHHCCCCCCH
Q 040371 72 I-ELNFILSAALIDMYSKCG--KIQMAKEVFDTVQR--N-DVSVWNAMISG---VAIHGLAADASAIFTKMEMFNVLPDS 142 (410)
Q Consensus 72 ~-~~~~~~~~~li~~y~~~g--~~~~A~~~f~~m~~--~-~~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~g~~p~~ 142 (410)
. .....+++.+..++.+.| ++++|...|++..+ | +...+..+... +...++.++|++.|++..+.. +.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccch
Confidence 1 123566666666666654 69999999998763 4 45556555544 345678889999999887742 2245
Q ss_pred HHHHHHHHHHHc----cCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHH
Q 040371 143 ITFLGLLTACSH----CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPD-VVVWRAL 216 (410)
Q Consensus 143 ~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l 216 (410)
.++..+...+.. .|..++|.++++..... .+.+...+..+...|.+.|++++|...+++. ...|+ ..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 555555545444 46788999999988753 2345778899999999999999999999987 44564 5556555
Q ss_pred HHHHHhc-------------------CchhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 040371 217 LSACRTF-------------------KRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGV 272 (410)
Q Consensus 217 i~~~~~~-------------------g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 272 (410)
-..+... +..+.|... ..+..|.+...+..+..+|...|++++|.+.|++..+...
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 4444321 224445544 4566788889999999999999999999999999877654
No 53
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=5.4e-12 Score=114.07 Aligned_cols=165 Identities=11% Similarity=0.086 Sum_probs=103.8
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHc------CC
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSS-------KVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEK------KI 72 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~-------g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------g~ 72 (410)
..+|..+...|...|++++|+.+|+++.+. ..+....++..+...+...|++++|...++.+++. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456777888888888888888888877652 12223456667777777778888887777777654 21
Q ss_pred -CccHHHHHHHHHHHHhcCCHHHHHHHHHhccc-------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----
Q 040371 73 -ELNFILSAALIDMYSKCGKIQMAKEVFDTVQR-------N----DVSVWNAMISGVAIHGLAADASAIFTKMEMF---- 136 (410)
Q Consensus 73 -~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---- 136 (410)
+....++..+...|...|++++|...|++..+ + ...+|..+...|...|++++|++.|++....
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 22355667777777777777777777765542 1 2235566666666666666666666666543
Q ss_pred --CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 040371 137 --NVLPD-SITFLGLLTACSHCGLVEEGRKYFDHMRS 170 (410)
Q Consensus 137 --g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 170 (410)
+..|+ ..++..+...+...|++++|..+|+.+.+
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11222 23455555666666666666666666553
No 54
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.36 E-value=2.9e-09 Score=103.27 Aligned_cols=254 Identities=11% Similarity=-0.034 Sum_probs=157.4
Q ss_pred ChhHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHcCCCccH
Q 040371 5 DVVSWNSMIGGFVR----NARFDEALRFFREMLSSKVEPDKFTFASVIYGCAR----LGALNHAYWVHNLIIEKKIELNF 76 (410)
Q Consensus 5 ~~~~~n~li~~~~~----~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~ 76 (410)
+...+..|-..|.. .+++++|++.|++..+.| +...+..+...+.. .+++++|...+++..+.| +.
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 147 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RD 147 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44566667777777 777888888887777654 45566666666666 667788888887777765 45
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHhccc-CChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 040371 77 ILSAALIDMYSK----CGKIQMAKEVFDTVQR-NDVSVWNAMISGVAI----HGLAADASAIFTKMEMFNVLPDSITFLG 147 (410)
Q Consensus 77 ~~~~~li~~y~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 147 (410)
..+..|..+|.. .++.++|.+.|++..+ .+..++..+...|.. .++.++|++.|++..+.| +...+..
T Consensus 148 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 224 (490)
T 2xm6_A 148 SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLH 224 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 666677777776 6777777777776543 356667777777766 677777777777776654 3445555
Q ss_pred HHHHHHc----cCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 040371 148 LLTACSH----CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGR----AGHIEEAYGLITSMTMEPDVVVWRALLSA 219 (410)
Q Consensus 148 ll~a~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~li~~ 219 (410)
+...+.. .++.++|..+|+...+. + +...+..+..+|.. .+++++|..+|++.-..-+...+..+-..
T Consensus 225 lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~ 300 (490)
T 2xm6_A 225 LADMYYFGIGVTQDYTQSRVLFSQSAEQ-G---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHL 300 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHTT-T---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555554 56777777777766542 2 34455556666665 66677777766665212244455555555
Q ss_pred HHhc-----CchhHHHHHHHh-hccCCCchHHHHHHHHHhcC---ChhHHHHHHHHHHhCC
Q 040371 220 CRTF-----KRLELGEVAIVN-ISRLMGGDYVLLSNMYCYLK---RWDTAENVREIMKKKG 271 (410)
Q Consensus 220 ~~~~-----g~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~g 271 (410)
+... +++++|...+.+ ....++..+..|..+|...| +.++|.+.+++..+.|
T Consensus 301 y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~ 361 (490)
T 2xm6_A 301 YDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG 361 (490)
T ss_dssp HHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC
Confidence 5544 566666666221 22233344555555555544 4556666666555543
No 55
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=2.7e-11 Score=109.43 Aligned_cols=192 Identities=15% Similarity=0.137 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHc-------CCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc-------C--
Q 040371 42 FTFASVIYGCARLGALNHAYWVHNLIIEK-------KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR-------N-- 105 (410)
Q Consensus 42 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~-- 105 (410)
.++..+...+...|++++|..+++.+.+. ..+....++..+...|...|++++|...|++... +
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45677778888899999999999888774 3344567788888999999999999988887642 1
Q ss_pred --ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc----
Q 040371 106 --DVSVWNAMISGVAIHGLAADASAIFTKMEMF------NVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRSRY---- 172 (410)
Q Consensus 106 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---- 172 (410)
...+|..+...|...|++++|...|++.... +..| ....+..+...+...|++++|..+|+.+.+..
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 2457888888899999999999999888764 2223 34567778888889999999999998876531
Q ss_pred -CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC---------------------------------------------
Q 040371 173 -SIQP-QLEHYGAMVDLLGRAGHIEEAYGLITSMT--------------------------------------------- 205 (410)
Q Consensus 173 -~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------------------------------------------- 205 (410)
+..| ....+..+...|.+.|++++|.+.+++.-
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1122 24578888888999999999988887651
Q ss_pred -----CCC-CHHHHHHHHHHHHhcCchhHHHHHH
Q 040371 206 -----MEP-DVVVWRALLSACRTFKRLELGEVAI 233 (410)
Q Consensus 206 -----~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 233 (410)
..| +..+|..+...|...|++++|...+
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 301 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 123 3456888888899999999999883
No 56
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.34 E-value=3.4e-10 Score=94.28 Aligned_cols=163 Identities=13% Similarity=0.043 Sum_probs=113.6
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 84 (410)
+...|..+-..|.+.|++++|++.|++.++.. +-+..++..+..++...|+++.|...+....... +.+..++..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45667778888888888888888888777642 2355677777777777788888877777777664 345666667777
Q ss_pred HHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 040371 85 MYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG 161 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 161 (410)
.+...++++.|...+++... .+..+|..+...|.+.|++++|++.|++..+.. +.+..++..+..++.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 77777777777777776542 345667777777777777777777777776642 22455666677777777777777
Q ss_pred HHHHHHhhh
Q 040371 162 RKYFDHMRS 170 (410)
Q Consensus 162 ~~~~~~m~~ 170 (410)
...|+...+
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777653
No 57
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=5.7e-10 Score=109.42 Aligned_cols=144 Identities=16% Similarity=0.116 Sum_probs=94.0
Q ss_pred cCCHH-------HHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-H-HHHHHHHHHHHhc
Q 040371 155 CGLVE-------EGRKYFDHMRSRYSIQP-QLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPD-V-VVWRALLSACRTF 223 (410)
Q Consensus 155 ~g~~~-------~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~-~~~~~li~~~~~~ 223 (410)
.|+++ +|..+|+...+ .+.| +...|..++..+.+.|++++|..+|++. ...|+ . ..|..+...+.+.
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~--~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAIS--TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTT--TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHH--HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHh
Confidence 57766 78888888774 2334 4678888888888888888888888876 44554 2 4788888888888
Q ss_pred CchhHHHHHHHh---hccCCCchHHHHHHH-HHhcCChhHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCcc
Q 040371 224 KRLELGEVAIVN---ISRLMGGDYVLLSNM-YCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPE 299 (410)
Q Consensus 224 g~~~~a~~~~~~---~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 299 (410)
|+++.|..++.+ ..|.+...|...+.+ +...|+.++|..+|+...+.. |+....|.. ++.-....|+
T Consensus 370 ~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~-------~~~~~~~~g~ 440 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLA-------YIDYLSHLNE 440 (530)
T ss_dssp HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHH-------HHHHHTTTTC
T ss_pred cCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHH-------HHHHHHhCCC
Confidence 888888888332 233333334333323 335788888888888776542 333233421 1222345788
Q ss_pred HHHHHHHHHH
Q 040371 300 AQAIDKILGS 309 (410)
Q Consensus 300 ~~~~~~~l~~ 309 (410)
.++|...+++
T Consensus 441 ~~~Ar~~~~~ 450 (530)
T 2ooe_A 441 DNNTRVLFER 450 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HhhHHHHHHH
Confidence 8888888874
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.31 E-value=3.7e-10 Score=94.05 Aligned_cols=167 Identities=11% Similarity=0.028 Sum_probs=132.8
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHH
Q 040371 40 DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISG 116 (410)
Q Consensus 40 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~ 116 (410)
+...|..+..++...|++++|.+.|++.++.. +.+..++..+...|.+.|++++|...+..... .+...|..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 56788888899999999999999999988875 45788888889999999999999988887653 356677778888
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 040371 117 VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196 (410)
Q Consensus 117 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 196 (410)
+...++++.|.+.+.+..... +-+...+..+...+.+.|++++|.+.|+...+. -+.+...|..+...|.+.|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCHHH
Confidence 888899999999988887642 235667778888888899999999999888753 13356788888888999999999
Q ss_pred HHHHHHhC-CCCCCH
Q 040371 197 AYGLITSM-TMEPDV 210 (410)
Q Consensus 197 A~~~~~~m-~~~p~~ 210 (410)
|.+.|++. ...|+.
T Consensus 160 A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhCCccC
Confidence 98888876 445543
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.31 E-value=2.9e-11 Score=116.88 Aligned_cols=205 Identities=6% Similarity=-0.043 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH-HHHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHH
Q 040371 57 LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKI-QMAKEVFDTVQR--N-DVSVWNAMISGVAIHGLAADASAIFTK 132 (410)
Q Consensus 57 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~ 132 (410)
++.+.+.++...+.. +.+...+..+...|...|++ ++|.+.|++..+ | +..+|..+...|.+.|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455566666555432 45788899999999999999 999999988753 3 577899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhc--------CCHH
Q 040371 133 MEMFNVLPDSITFLGLLTACSHC---------GLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRA--------GHIE 195 (410)
Q Consensus 133 m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~--------g~~~ 195 (410)
..+. .|+...+..+...+... |++++|...|+...+. -+.+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 8874 57778888888888888 9999999999998853 233477888899999888 8999
Q ss_pred HHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCchhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 040371 196 EAYGLITSM-TMEP----DVVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREI 266 (410)
Q Consensus 196 ~A~~~~~~m-~~~p----~~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 266 (410)
+|.+.|++. ...| +...|..+-..+...|++++|... ..++.|.+...+..+..++...|++++|.+.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999887 4455 678899999999999999999998 5567788888888999999999999988875543
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.28 E-value=9.1e-10 Score=100.03 Aligned_cols=197 Identities=11% Similarity=0.079 Sum_probs=157.5
Q ss_pred ChhHHHHHHHHHHH-------cCCH-------hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVR-------NARF-------DEALRFFREMLSSKVEP-DKFTFASVIYGCARLGALNHAYWVHNLIIE 69 (410)
Q Consensus 5 ~~~~~n~li~~~~~-------~g~~-------~~a~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 69 (410)
+...|..+...+.+ .|++ ++|..+|++..+. +.| +...|..+...+...|+++.|.++|+++++
T Consensus 49 ~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 127 (308)
T 2ond_A 49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 127 (308)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 45678888887764 5886 8999999999873 345 556899999999999999999999999998
Q ss_pred cCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHH-HcCChHHHHHHHHHHHHCCCCCCHHH
Q 040371 70 KKIELNFI-LSAALIDMYSKCGKIQMAKEVFDTVQRN---DVSVWNAMISGVA-IHGLAADASAIFTKMEMFNVLPDSIT 144 (410)
Q Consensus 70 ~g~~~~~~-~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~t 144 (410)
.. +.+.. +|..++..+.+.|++++|+.+|++..+. +...|........ ..|+.++|..+|++..+.. +-+...
T Consensus 128 ~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 205 (308)
T 2ond_A 128 IE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEY 205 (308)
T ss_dssp SS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHH
T ss_pred cc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHH
Confidence 53 22343 8999999999999999999999988753 3344443333222 2699999999999998752 225677
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 145 FLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP--QLEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 145 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
+..++..+.+.|++++|..+|+...+...+.| ....|..++..+.+.|+.++|..+++++
T Consensus 206 ~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 206 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88889999999999999999999986423455 3678999999999999999999999887
No 61
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=9.3e-09 Score=95.73 Aligned_cols=261 Identities=13% Similarity=0.019 Sum_probs=185.5
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhhCCHHHHHHHHHHHHHc----CCC-ccHHHH
Q 040371 9 WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKF----TFASVIYGCARLGALNHAYWVHNLIIEK----KIE-LNFILS 79 (410)
Q Consensus 9 ~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~ 79 (410)
+......+...|++++|...+++.....-..+.. ++..+...+...|+++.|.+.+++..+. |.. ....+.
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556778999999999999988753222222 4566667788999999999999988764 211 112346
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc----------C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHH
Q 040371 80 AALIDMYSKCGKIQMAKEVFDTVQR----------N-DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVL--P--DSIT 144 (410)
Q Consensus 80 ~~li~~y~~~g~~~~A~~~f~~m~~----------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t 144 (410)
+.+...|...|++++|...|++... + ...++..+...|...|++++|...+++....... | ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 7788899999999999999987642 1 1235667788899999999999999988764221 1 2345
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHH-----HHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHH
Q 040371 145 FLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG-----AMVDLLGRAGHIEEAYGLITSM-TMEPD-----VVVW 213 (410)
Q Consensus 145 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~ 213 (410)
+..+...+...|++++|...++.......-......+. ..+..+...|++++|...+++. ...|. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77788888999999999999998874311111111222 2334578999999999999987 22221 3356
Q ss_pred HHHHHHHHhcCchhHHHHHHHhh---ccC-----C-CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040371 214 RALLSACRTFKRLELGEVAIVNI---SRL-----M-GGDYVLLSNMYCYLKRWDTAENVREIMKK 269 (410)
Q Consensus 214 ~~li~~~~~~g~~~~a~~~~~~~---~~~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 269 (410)
..+...+...|++++|...+.+. .+. . ...+..+..+|...|+.++|...+++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 67778889999999999883322 111 1 12566678889999999999999988754
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.26 E-value=1.8e-10 Score=111.27 Aligned_cols=209 Identities=10% Similarity=-0.021 Sum_probs=172.3
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 040371 20 ARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGAL-NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEV 98 (410)
Q Consensus 20 g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 98 (410)
..+++++..+++.... .+.+...+..+..++...|++ ++|.+.++++++.. +.+...+..+...|.+.|++++|.+.
T Consensus 82 ~~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4477888888877654 244777888888999999999 99999999998875 44688999999999999999999999
Q ss_pred HHhcc--cCChhhHHHHHHHHHHc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc--------CCHH
Q 040371 99 FDTVQ--RNDVSVWNAMISGVAIH---------GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHC--------GLVE 159 (410)
Q Consensus 99 f~~m~--~~~~~~~~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--------g~~~ 159 (410)
|++.. .|+...|..+...|... |++++|++.|++..+.. +-+...+..+..++... |+++
T Consensus 160 ~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99876 46677888888889888 99999999999988753 23567788888888888 8999
Q ss_pred HHHHHHHHhhhhcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHH
Q 040371 160 EGRKYFDHMRSRYSIQP----QLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGEVAI 233 (410)
Q Consensus 160 ~a~~~~~~m~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 233 (410)
+|...|+...+. .| +...|..+...|.+.|++++|.+.|++. ...| +...|..+...+...|++++|....
T Consensus 239 ~A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998853 33 6788999999999999999999999887 4445 4667888888888899998888763
Q ss_pred H
Q 040371 234 V 234 (410)
Q Consensus 234 ~ 234 (410)
.
T Consensus 316 ~ 316 (474)
T 4abn_A 316 G 316 (474)
T ss_dssp T
T ss_pred c
Confidence 3
No 63
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.26 E-value=2.1e-09 Score=111.98 Aligned_cols=227 Identities=14% Similarity=0.192 Sum_probs=137.3
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 040371 11 SMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCG 90 (410)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 90 (410)
-+...+...|.+++|..+|++.. . .....+.++. ..+++++|.++.++. .+..+|..+..++.+.|
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~----~-~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD----V-NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC----C-HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCC
Confidence 34556666777777777776631 0 1111111211 344455554444433 12444445555555555
Q ss_pred CHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC--------------------------CCCCHHH
Q 040371 91 KIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFN--------------------------VLPDSIT 144 (410)
Q Consensus 91 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--------------------------~~p~~~t 144 (410)
++++|...|.+. .|...|.-++..+.+.|++++|++.|...++.. -.|+...
T Consensus 1120 ~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad 1197 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAH 1197 (1630)
T ss_pred CHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHH
Confidence 555555555332 344444445555555555555555543322211 1234445
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 040371 145 FLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFK 224 (410)
Q Consensus 145 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g 224 (410)
+..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+..+|..+-.+|...|
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA---~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA---NSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh---CCHHHHHHHHHHHhhhh
Confidence 556666667777777777777664 26888888888888888888888876 36788888888888888
Q ss_pred chhHHHHHHHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 040371 225 RLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIM 267 (410)
Q Consensus 225 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 267 (410)
++..|...... ...++..+..++..|.+.|.+++|..+++.-
T Consensus 1265 Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1265 EFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred HHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888443 2334556778888999999999999988654
No 64
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=6.5e-10 Score=91.91 Aligned_cols=161 Identities=12% Similarity=0.084 Sum_probs=123.4
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMY 86 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 86 (410)
..|..+...|...|++++|+..|+++.+.. +.+...+..+..++...|+++.|...++.+.+.. +.+..++..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 467788888889999999999998887542 3467778888888888899999998888888764 44677788888888
Q ss_pred HhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 040371 87 SKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163 (410)
Q Consensus 87 ~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 163 (410)
.+.|++++|.+.|++... .+...|..+...|...|++++|.+.|++..... +.+...+..+...+...|++++|..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888887653 355677777777888888888888888777653 2345667777777777888888888
Q ss_pred HHHHhhh
Q 040371 164 YFDHMRS 170 (410)
Q Consensus 164 ~~~~m~~ 170 (410)
.++.+.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777664
No 65
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.23 E-value=2.8e-09 Score=111.11 Aligned_cols=232 Identities=10% Similarity=0.067 Sum_probs=184.2
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 84 (410)
+..+|..+-.++.+.|++++|++.|.+. -|...|..++.+|.+.|+++++.+.+....+.. +++.+.+.++.
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Laf 1175 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 1175 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHH
Confidence 3568999999999999999999999663 377889999999999999999999999888764 45555556999
Q ss_pred HHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 040371 85 MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKY 164 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 164 (410)
+|+|.+++++...+. ..++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.
T Consensus 1176 aYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred HHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999644443 4567778888999999999999999999984 4799999999999999999999
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHH---HhhccCCC
Q 040371 165 FDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLELGEVAI---VNISRLMG 241 (410)
Q Consensus 165 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~---~~~~~~~~ 241 (410)
++... +..+|..+-.++...|++..|......+ ..+...+..++..|...|.+++|..++ ..+++...
T Consensus 1244 arKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~ 1314 (1630)
T 1xi4_A 1244 ARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHM 1314 (1630)
T ss_pred HHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh
Confidence 98764 5678888888888899999888776643 335555668888899999999999883 34455555
Q ss_pred chHHHHHHHHHhc--CChhHHHHHHH
Q 040371 242 GDYVLLSNMYCYL--KRWDTAENVRE 265 (410)
Q Consensus 242 ~~~~~l~~~~~~~--g~~~~a~~~~~ 265 (410)
..|.-|...|++. ++..++.+.|.
T Consensus 1315 gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1315 GMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6676677777654 33444444443
No 66
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.22 E-value=1.3e-09 Score=104.76 Aligned_cols=259 Identities=10% Similarity=-0.019 Sum_probs=167.1
Q ss_pred hHHHHHHHHHHHc--CCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH---HhhCCHHHHHHHHHHHHHcCCCccHHHHH
Q 040371 7 VSWNSMIGGFVRN--ARFDEALRFFREMLSSKVEPD-KFTFASVIYGC---ARLGALNHAYWVHNLIIEKKIELNFILSA 80 (410)
Q Consensus 7 ~~~n~li~~~~~~--g~~~~a~~l~~~m~~~g~~pd-~~t~~~ll~a~---~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 80 (410)
.+|+.+-.++... +++++|++.|++..+. .|+ ...+..+..++ ...++.+.|.+.+++.++.. +.+..++.
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~ 213 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKV 213 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHH
Confidence 4566555556554 4689999999999874 444 44555544443 45567788888888888875 44666676
Q ss_pred HHHHHHHhc----CCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 040371 81 ALIDMYSKC----GKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD-SITFLGLLTAC 152 (410)
Q Consensus 81 ~li~~y~~~----g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 152 (410)
.+...+.+. |++++|.+.|++... .+..+|+.+...|...|++++|++.|++..+. .|+ ..++..+...+
T Consensus 214 ~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y 291 (472)
T 4g1t_A 214 LLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCY 291 (472)
T ss_dssp HHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHH
Confidence 666555554 567889999987653 35678899999999999999999999998874 443 45555554444
Q ss_pred Hc-------------------cCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH
Q 040371 153 SH-------------------CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDVVV 212 (410)
Q Consensus 153 ~~-------------------~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~ 212 (410)
.. .+..++|...|+...+. -+.+...+..+...|.+.|++++|...|++. ...|+...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~ 369 (472)
T 4g1t_A 292 RAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369 (472)
T ss_dssp HHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence 32 12356777777777643 1234567888899999999999999999876 44444332
Q ss_pred ----HHHHHH-HHHhcCchhHHHHHH---------------------------HhhccCCCchHHHHHHHHHhcCChhHH
Q 040371 213 ----WRALLS-ACRTFKRLELGEVAI---------------------------VNISRLMGGDYVLLSNMYCYLKRWDTA 260 (410)
Q Consensus 213 ----~~~li~-~~~~~g~~~~a~~~~---------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~a 260 (410)
+..+.. .....|+.++|...+ .+..|.++.+|..|..+|...|++++|
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A 449 (472)
T 4g1t_A 370 KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQA 449 (472)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 222222 234567777776651 133577888999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 040371 261 ENVREIMKKKGV 272 (410)
Q Consensus 261 ~~~~~~m~~~g~ 272 (410)
.+.|++..+.|-
T Consensus 450 ~~~y~kALe~~~ 461 (472)
T 4g1t_A 450 DEDSERGLESGS 461 (472)
T ss_dssp ------------
T ss_pred HHHHHHHHhcCC
Confidence 999999887654
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.20 E-value=1.1e-09 Score=102.50 Aligned_cols=223 Identities=10% Similarity=-0.045 Sum_probs=167.0
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHc----CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhccc-----C-----ChhhHH
Q 040371 47 VIYGCARLGALNHAYWVHNLIIEK----KIEL-NFILSAALIDMYSKCGKIQMAKEVFDTVQR-----N-----DVSVWN 111 (410)
Q Consensus 47 ll~a~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~-----~~~~~~ 111 (410)
....+...|+++.|...+....+. +-++ ...++..+...|...|++++|...|++..+ + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677899999999999999874 2222 356788999999999999999998887642 1 135788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhh---cCC-CCChhHHH
Q 040371 112 AMISGVAIHGLAADASAIFTKMEMF----NVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRSR---YSI-QPQLEHYG 182 (410)
Q Consensus 112 ~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~-~~~~~~~~ 182 (410)
.+...|...|++++|++.|++.... +-.+ ...++..+...+...|++++|...|+...+- .+. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999988653 1111 1246788889999999999999999988751 122 22356788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhcCc---hhHHHHHHHhhc--cCCCchHHHHHHH
Q 040371 183 AMVDLLGRAGHIEEAYGLITSM-TM-----EPD-VVVWRALLSACRTFKR---LELGEVAIVNIS--RLMGGDYVLLSNM 250 (410)
Q Consensus 183 ~li~~~~~~g~~~~A~~~~~~m-~~-----~p~-~~~~~~li~~~~~~g~---~~~a~~~~~~~~--~~~~~~~~~l~~~ 250 (410)
.+...|.+.|++++|...+++. .+ .|. ...+..+-..+...|+ +++|..++.+.. +.....+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8999999999999999998876 11 122 2334556666778888 666766655442 2223467789999
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 040371 251 YCYLKRWDTAENVREIMKK 269 (410)
Q Consensus 251 ~~~~g~~~~a~~~~~~m~~ 269 (410)
|.+.|++++|...+++..+
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998754
No 68
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.19 E-value=1.5e-09 Score=101.70 Aligned_cols=277 Identities=12% Similarity=0.052 Sum_probs=201.1
Q ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHhccc-----C---
Q 040371 38 EPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELN----FILSAALIDMYSKCGKIQMAKEVFDTVQR-----N--- 105 (410)
Q Consensus 38 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~--- 105 (410)
.+....+......+...|++++|...++.+++.+.. + ..++..+...|...|++++|...|++... .
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 445667778888899999999999999999987432 3 46788999999999999999999987542 1
Q ss_pred -ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCC--------------------HH
Q 040371 106 -DVSVWNAMISGVAIHGLAADASAIFTKMEMFNV-LPD----SITFLGLLTACSHCGL--------------------VE 159 (410)
Q Consensus 106 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~--------------------~~ 159 (410)
...+|..+...|...|++++|+..|++...... .++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 245788899999999999999999998865311 112 3467788888999999 99
Q ss_pred HHHHHHHHhhhhc---CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCchh
Q 040371 160 EGRKYFDHMRSRY---SIQP-QLEHYGAMVDLLGRAGHIEEAYGLITSM----TMEPD----VVVWRALLSACRTFKRLE 227 (410)
Q Consensus 160 ~a~~~~~~m~~~~---~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~li~~~~~~g~~~ 227 (410)
+|...+....+.. +..| ....+..+...|...|++++|...+++. +..++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 9999998865421 1111 1357888889999999999999998876 11122 347788888899999999
Q ss_pred HHHHHHH---hhccCC------CchHHHHHHHHHhcCChhHHHHHHHHHHhC----CCcCCCceeEEEECCEEEEEEeCC
Q 040371 228 LGEVAIV---NISRLM------GGDYVLLSNMYCYLKRWDTAENVREIMKKK----GVRKSQGKSWLELAGVIHQFKAGD 294 (410)
Q Consensus 228 ~a~~~~~---~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~s~~~~~~~~~~~~~~~ 294 (410)
+|...+. ...+.. ..++..+...|...|++++|.+.+++..+. +-.+.....+.. +...+
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-------la~~~ 317 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWS-------LGNAY 317 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------HHHHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH-------HHHHH
Confidence 9999832 222322 346778899999999999999999887543 111110111110 11223
Q ss_pred CCCccHHHHHHHHHHHHHHHHHCCcccC
Q 040371 295 RSHPEAQAIDKILGSLIQRTKSEGFLPA 322 (410)
Q Consensus 295 ~~~~~~~~~~~~l~~l~~~m~~~g~~pd 322 (410)
...|+.++|...+++..+...+.|..|.
T Consensus 318 ~~~g~~~~A~~~~~~al~~~~~~~~~~~ 345 (406)
T 3sf4_A 318 TALGNHDQAMHFAEKHLEISREVGDKSG 345 (406)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 3467889999999887777666665443
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.17 E-value=2.7e-09 Score=99.92 Aligned_cols=221 Identities=10% Similarity=0.019 Sum_probs=172.3
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcC--C----CccHHHHH
Q 040371 12 MIGGFVRNARFDEALRFFREMLSS----KVEP-DKFTFASVIYGCARLGALNHAYWVHNLIIEKK--I----ELNFILSA 80 (410)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~~~----g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~----~~~~~~~~ 80 (410)
....+...|++++|+..|++..+. +-.+ ...++..+..++...|+++.|...+.+.++.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445677899999999999998763 1122 23578888999999999999999999887641 1 12246788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHH
Q 040371 81 ALIDMYSKCGKIQMAKEVFDTVQR-----ND----VSVWNAMISGVAIHGLAADASAIFTKMEMF----NVLP-DSITFL 146 (410)
Q Consensus 81 ~li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~ 146 (410)
.+...|...|++++|...|++..+ ++ ..+|+.+...|...|++++|++.|++.... +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 999999999999999999987652 12 247888999999999999999999998762 3323 456788
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhc---CCCCChhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 040371 147 GLLTACSHCGLVEEGRKYFDHMRSRY---SIQPQLEHYGAMVDLLGRAGH---IEEAYGLITSMTMEPDV-VVWRALLSA 219 (410)
Q Consensus 147 ~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~-~~~~~li~~ 219 (410)
.+...+.+.|++++|...++...+.. +-+.....+..+...|...|+ +++|+.++++.+..|+. ..+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 89999999999999999999876431 111122345677788888998 89999999998655543 466778888
Q ss_pred HHhcCchhHHHHH
Q 040371 220 CRTFKRLELGEVA 232 (410)
Q Consensus 220 ~~~~g~~~~a~~~ 232 (410)
|...|++++|...
T Consensus 349 y~~~g~~~~A~~~ 361 (383)
T 3ulq_A 349 YHERKNFQKASAY 361 (383)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHHCCCHHHHHHH
Confidence 9999999999988
No 70
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.16 E-value=1.1e-09 Score=103.40 Aligned_cols=227 Identities=11% Similarity=0.035 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccH----HHHHHHHHHHHhcCCHHHHHHHHHhcccC---------Chh
Q 040371 42 FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNF----ILSAALIDMYSKCGKIQMAKEVFDTVQRN---------DVS 108 (410)
Q Consensus 42 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~y~~~g~~~~A~~~f~~m~~~---------~~~ 108 (410)
..+..+...+...|++++|...++.+++.... +. .++..+...|...|++++|...|++..+. ...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 45556677888999999999999999987532 33 57889999999999999999999876521 345
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCC-----------------HHHHHHHHH
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKMEMF----NVLP-DSITFLGLLTACSHCGL-----------------VEEGRKYFD 166 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~-----------------~~~a~~~~~ 166 (410)
+|..+...|...|++++|+..|++.... +-.| ...++..+...+...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7888999999999999999999987654 1122 24567788889999999 999999988
Q ss_pred Hhhhhc---CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCchhHHHHHHH
Q 040371 167 HMRSRY---SIQP-QLEHYGAMVDLLGRAGHIEEAYGLITSM-TM---EPD----VVVWRALLSACRTFKRLELGEVAIV 234 (410)
Q Consensus 167 ~m~~~~---~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~li~~~~~~g~~~~a~~~~~ 234 (410)
...+.. +..+ ....+..+...|...|++++|...+++. .. .++ ..++..+...+...|++++|...+.
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 865321 1111 2357888889999999999999999886 11 122 2377888888999999999999832
Q ss_pred ---hhccCC------CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040371 235 ---NISRLM------GGDYVLLSNMYCYLKRWDTAENVREIMKK 269 (410)
Q Consensus 235 ---~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 269 (410)
...+.. ..++..+..+|...|++++|...+++..+
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222322 34677889999999999999999998765
No 71
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.16 E-value=1e-09 Score=99.80 Aligned_cols=227 Identities=12% Similarity=0.046 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHhccc-----C----Chh
Q 040371 42 FTFASVIYGCARLGALNHAYWVHNLIIEKKIELN----FILSAALIDMYSKCGKIQMAKEVFDTVQR-----N----DVS 108 (410)
Q Consensus 42 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~----~~~ 108 (410)
..+......+...|+++.|...++.+++.... + ..++..+...|...|++++|.+.|++... + ...
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34555667788999999999999999987422 3 46788999999999999999999987642 1 245
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCC--------------------HHHHHH
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKMEMFNV-LPD----SITFLGLLTACSHCGL--------------------VEEGRK 163 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~--------------------~~~a~~ 163 (410)
+|..+...|...|++++|...|++...... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 788899999999999999999998765311 112 3367788888899999 999999
Q ss_pred HHHHhhhhc---CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCchhHHHH
Q 040371 164 YFDHMRSRY---SIQP-QLEHYGAMVDLLGRAGHIEEAYGLITSM----TMEPD----VVVWRALLSACRTFKRLELGEV 231 (410)
Q Consensus 164 ~~~~m~~~~---~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~li~~~~~~g~~~~a~~ 231 (410)
.++...+.. +..+ ....+..+...|...|++++|...+++. +..++ ..++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 998865321 1111 1347888889999999999999999876 11122 3477888888999999999999
Q ss_pred HHH---hhccCC------CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040371 232 AIV---NISRLM------GGDYVLLSNMYCYLKRWDTAENVREIMKK 269 (410)
Q Consensus 232 ~~~---~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 269 (410)
.+. ...+.. ..++..+...|...|++++|...+++..+
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 832 222222 34677889999999999999999988754
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.16 E-value=3.1e-09 Score=87.75 Aligned_cols=156 Identities=15% Similarity=0.074 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHc
Q 040371 44 FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIH 120 (410)
Q Consensus 44 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 120 (410)
+..+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...|++..+ .+...|..+...|...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 3444444445555555555555444332 22344445555555555555555555544331 2334444444555555
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 040371 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGL 200 (410)
Q Consensus 121 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 200 (410)
|++++|.+.|+++.... +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555544431 223344444444445555555555555554432 112234444444445555555555444
Q ss_pred HHh
Q 040371 201 ITS 203 (410)
Q Consensus 201 ~~~ 203 (410)
+++
T Consensus 167 ~~~ 169 (186)
T 3as5_A 167 FKK 169 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.14 E-value=2.2e-09 Score=108.37 Aligned_cols=161 Identities=13% Similarity=0.046 Sum_probs=142.5
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEP-DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALI 83 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 83 (410)
+..+|+.|-..|.+.|++++|++.|++.++. .| +..+|..+..++.+.|++++|.+.|++.++.. +.+...++.|.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3568999999999999999999999999875 44 57799999999999999999999999999875 44688999999
Q ss_pred HHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHH
Q 040371 84 DMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVE 159 (410)
Q Consensus 84 ~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 159 (410)
.+|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|++.|++..+. .| +...+..+..++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999998763 36789999999999999999999999999874 55 4677889999999999999
Q ss_pred HHHHHHHHhhh
Q 040371 160 EGRKYFDHMRS 170 (410)
Q Consensus 160 ~a~~~~~~m~~ 170 (410)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887653
No 74
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.14 E-value=4.4e-10 Score=99.72 Aligned_cols=153 Identities=12% Similarity=0.038 Sum_probs=95.6
Q ss_pred HcCCHhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHc------CC-CccHHHHHHHH
Q 040371 18 RNARFDEALRFFREMLSS-------KVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEK------KI-ELNFILSAALI 83 (410)
Q Consensus 18 ~~g~~~~a~~l~~~m~~~-------g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li 83 (410)
..|++++|+..|++..+. ..+....++..+..++...|++++|...+..+++. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456666666666665441 11223456777777788888888888888777654 22 22355677777
Q ss_pred HHHHhcCCHHHHHHHHHhccc-------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHH
Q 040371 84 DMYSKCGKIQMAKEVFDTVQR-------N----DVSVWNAMISGVAIHGLAADASAIFTKMEMF------NVLP-DSITF 145 (410)
Q Consensus 84 ~~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~ 145 (410)
..|...|++++|...|++... + ...+|..+...|...|++++|+..|++.... +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 777788888877777766542 1 2345666666677777777777777766553 1122 23445
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhh
Q 040371 146 LGLLTACSHCGLVEEGRKYFDHMRS 170 (410)
Q Consensus 146 ~~ll~a~~~~g~~~~a~~~~~~m~~ 170 (410)
..+...+...|++++|..+|+.+.+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5666666666666666666666553
No 75
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.12 E-value=7.9e-09 Score=93.06 Aligned_cols=93 Identities=8% Similarity=-0.046 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcccC-----C----hhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCC---CC-C-
Q 040371 77 ILSAALIDMYSKCGKIQMAKEVFDTVQRN-----D----VSVWNAMISGVAIH-GLAADASAIFTKMEMFNV---LP-D- 141 (410)
Q Consensus 77 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~---~p-~- 141 (410)
.+++.+..+|.+.|++++|...|++..+- + ..+|+.+...|... |++++|+..|++..+... .+ .
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 34444444444444444444444433210 1 12444444444443 555555554444433100 00 0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 040371 142 SITFLGLLTACSHCGLVEEGRKYFDHMR 169 (410)
Q Consensus 142 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 169 (410)
..++..+...+...|++++|...|+...
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al 185 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLI 185 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1234444444445555555555555444
No 76
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.12 E-value=1.6e-08 Score=99.00 Aligned_cols=221 Identities=14% Similarity=0.084 Sum_probs=153.2
Q ss_pred hHHHHHHHHHHHcC----CH----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------hCCHH-------HHHHHH
Q 040371 7 VSWNSMIGGFVRNA----RF----DEALRFFREMLSSKVEPDKFTFASVIYGCAR-------LGALN-------HAYWVH 64 (410)
Q Consensus 7 ~~~n~li~~~~~~g----~~----~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~-------~~~~~-------~a~~~~ 64 (410)
..|...+.....++ +. ++++.+|++.+.. .+-+...|......+.+ .|+++ .|+.++
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 46666664443322 22 3677888888764 23456677777777765 68876 788888
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc--C-Ch-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 040371 65 NLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR--N-DV-SVWNAMISGVAIHGLAADASAIFTKMEMFNVLP 140 (410)
Q Consensus 65 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 140 (410)
++.++.-.+.+..+|..++..+.+.|++++|+.+|++..+ | +. ..|...+..+.+.|+.++|.++|++..+. .|
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~ 387 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--AR 387 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TT
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cC
Confidence 8887632345688888888888888888888888887753 3 32 47888888888888888888888888764 23
Q ss_pred C-HHHHHHHHHH-HHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC--HHH
Q 040371 141 D-SITFLGLLTA-CSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM----TMEPD--VVV 212 (410)
Q Consensus 141 ~-~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~ 212 (410)
+ ...|...... +...|+.++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ ...
T Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 388 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 2 2233222222 235788888888888877542 234678888888888888888888888876 22332 457
Q ss_pred HHHHHHHHHhcCchhHHHHH
Q 040371 213 WRALLSACRTFKRLELGEVA 232 (410)
Q Consensus 213 ~~~li~~~~~~g~~~~a~~~ 232 (410)
|...+.....+|+.+.+..+
T Consensus 466 w~~~~~~e~~~G~~~~~~~~ 485 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKV 485 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHH
Confidence 77777777777887777776
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.12 E-value=1.9e-08 Score=86.65 Aligned_cols=201 Identities=10% Similarity=0.032 Sum_probs=152.9
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 040371 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALI 83 (410)
Q Consensus 4 ~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 83 (410)
.|...|......|.+.|++++|+..|++..+...+++...+..+..++...|++++|.+.++..++.. +.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45678889999999999999999999999886533788888889999999999999999999999875 44788899999
Q ss_pred HHHHhcCCHHHHHHHHHhccc--C-Ch-------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 040371 84 DMYSKCGKIQMAKEVFDTVQR--N-DV-------SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD---SITFLGLLT 150 (410)
Q Consensus 84 ~~y~~~g~~~~A~~~f~~m~~--~-~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~ 150 (410)
..|.+.|++++|...|++..+ | +. ..|..+...+...|++++|++.|++..+. .|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 999999999999999998763 3 34 45888888899999999999999999874 565 345666666
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 040371 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDVVVWRAL 216 (410)
Q Consensus 151 a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 216 (410)
.+.. .+..+++.+... + ..+...|.... ....+.+++|...+++. ...|+......+
T Consensus 162 ~~~~-----~~~~~~~~a~~~-~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~ 219 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPL-A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQM 219 (228)
T ss_dssp HHHH-----HHHHHHHHHGGG-T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHH-----HHHHHHHHHHhc-c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 6543 445556665532 2 22344444443 33456689999999887 455654433333
No 78
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.10 E-value=2e-09 Score=95.35 Aligned_cols=197 Identities=14% Similarity=0.086 Sum_probs=136.4
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHc------C-
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSS------KVEP-DKFTFASVIYGCARLGALNHAYWVHNLIIEK------K- 71 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~------g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------g- 71 (410)
..+|+.+...|...|++++|+..|++..+. +-.| ...++..+..++...|++++|.+.+.++++. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 567999999999999999999999998753 2223 3557888999999999999999999998875 1
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccC-----------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----
Q 040371 72 IELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN-----------DVSVWNAMISGVAIHGLAADASAIFTKMEMF---- 136 (410)
Q Consensus 72 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---- 136 (410)
.+....++..+...|...|++++|...|++..+. ...+|..+...|...|++++|...|++....
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1334678899999999999999999999876532 2457888999999999999999999998763
Q ss_pred ---CCCCCHHH-HHHHHHHHHccC------CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 137 ---NVLPDSIT-FLGLLTACSHCG------LVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 137 ---g~~p~~~t-~~~ll~a~~~~g------~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
...|.... +..+.......+ .+..+...+..... ..+.....+..+...|.+.|++++|...+++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12233222 222222222222 23333333333221 11112456777788888888888888887754
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.10 E-value=2.1e-09 Score=108.52 Aligned_cols=154 Identities=10% Similarity=0.070 Sum_probs=114.6
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 040371 74 LNFILSAALIDMYSKCGKIQMAKEVFDTVQR--N-DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLL 149 (410)
Q Consensus 74 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll 149 (410)
-+...++.|...|.+.|++++|++.|++..+ | +..+|+.+...|.+.|++++|++.|++..+. .| +...+..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3467888888888888888888888887653 3 5678888888888888888888888888764 45 466788888
Q ss_pred HHHHccCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCch
Q 040371 150 TACSHCGLVEEGRKYFDHMRSRYSIQP-QLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRL 226 (410)
Q Consensus 150 ~a~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~ 226 (410)
.++...|++++|.+.|++..+. .| +...|+.+...|.+.|++++|++.|++. .+.| +...|..+...+...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 8888888888888888887743 33 3677888888888888888888887775 3444 345555666666666666
Q ss_pred hHHHHH
Q 040371 227 ELGEVA 232 (410)
Q Consensus 227 ~~a~~~ 232 (410)
++|.+.
T Consensus 162 ~~A~~~ 167 (723)
T 4gyw_A 162 TDYDER 167 (723)
T ss_dssp TTHHHH
T ss_pred HHHHHH
Confidence 666555
No 80
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.08 E-value=1.6e-08 Score=91.02 Aligned_cols=198 Identities=11% Similarity=0.016 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHc----CCCc-cHH
Q 040371 8 SWNSMIGGFVRNARFDEALRFFREMLSS----KVEPD-KFTFASVIYGCARLGALNHAYWVHNLIIEK----KIEL-NFI 77 (410)
Q Consensus 8 ~~n~li~~~~~~g~~~~a~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~~-~~~ 77 (410)
.|+.....|...|++++|++.|.+.... |-+++ ..+|..+..++...|++++|...+++.++. |-.. -..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5777788888899999999988877542 32222 457888888899999999999988888764 2111 145
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHhccc--C---C----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----
Q 040371 78 LSAALIDMYSKC-GKIQMAKEVFDTVQR--N---D----VSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSI---- 143 (410)
Q Consensus 78 ~~~~li~~y~~~-g~~~~A~~~f~~m~~--~---~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---- 143 (410)
+++.+...|.+. |++++|...|++..+ | + ..+|+.+...|.+.|++++|+..|++...........
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 788888889886 999999988887653 1 1 3467888888999999999999999888754322221
Q ss_pred --HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCCh------hHHHHHHHHHH--hcCCHHHHHHHHHhC-CCCC
Q 040371 144 --TFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL------EHYGAMVDLLG--RAGHIEEAYGLITSM-TMEP 208 (410)
Q Consensus 144 --t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~------~~~~~li~~~~--~~g~~~~A~~~~~~m-~~~p 208 (410)
++..+..++...|++++|...|+...+ +.|+. ..+..++..|. ..+++++|++.|+++ .+.|
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 466677778888999999999988763 33331 12344555554 356788888888776 3444
No 81
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.08 E-value=9.3e-09 Score=79.86 Aligned_cols=127 Identities=14% Similarity=0.194 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMY 86 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 86 (410)
.+|..+...|...|++++|+.+|+++.+.. +.+...+..+...+...|+++.|...++.+.+.+ +.+..++..+...|
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 357888888889999999999998887653 3466777888888888888888888888887764 44566777788888
Q ss_pred HhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040371 87 SKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEM 135 (410)
Q Consensus 87 ~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 135 (410)
.+.|++++|.+.|+++.. .+...|..+...|.+.|++++|...|+++..
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 888888888888877653 2456677777777777777777777777765
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.06 E-value=1.7e-08 Score=86.99 Aligned_cols=200 Identities=9% Similarity=0.007 Sum_probs=150.7
Q ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc--C-ChhhHHHHHH
Q 040371 39 PDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR--N-DVSVWNAMIS 115 (410)
Q Consensus 39 pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~ 115 (410)
.|+..+......+...|++++|...|+..++...+++...+..+...|.+.|++++|.+.|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 466788888999999999999999999999987547778888899999999999999999998764 3 4568999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCC---hhHHHHH
Q 040371 116 GVAIHGLAADASAIFTKMEMFNVLPD-S-------ITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ---LEHYGAM 184 (410)
Q Consensus 116 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~~l 184 (410)
.|...|++++|++.|++..+. .|+ . ..|..+...+...|++++|...|+...+ +.|+ ...|..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999874 343 3 4577777888899999999999999884 3554 4677777
Q ss_pred HHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCchhHHHHH---HHhhccCCCchHHHHHHH
Q 040371 185 VDLLGRAGHIEEAYGLITSM-T-MEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMGGDYVLLSNM 250 (410)
Q Consensus 185 i~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~l~~~ 250 (410)
...|...|+. .++++ . ...+...+.... ....+.+++|... ..++.|.++.+...+..+
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 7777666543 22222 1 112344444433 2345667888887 566778876666555443
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.04 E-value=3.5e-08 Score=92.21 Aligned_cols=225 Identities=8% Similarity=0.026 Sum_probs=130.1
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHc----C-CCc-cHHHHHHH
Q 040371 14 GGFVRNARFDEALRFFREMLSSK-VEPD----KFTFASVIYGCARLGALNHAYWVHNLIIEK----K-IEL-NFILSAAL 82 (410)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~~~g-~~pd----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g-~~~-~~~~~~~l 82 (410)
..+...|++++|+..|++..+.. -.+| ..++..+..++...|+++.|...+.+.++. + ..+ ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 34567788888888888776531 1122 345666777777788888887777776653 1 111 24556677
Q ss_pred HHHHHhcCCHHHHHHHHHhccc-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 040371 83 IDMYSKCGKIQMAKEVFDTVQR-----ND----VSVWNAMISGVAIHGLAADASAIFTKMEMF----NVLPDSITFLGLL 149 (410)
Q Consensus 83 i~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll 149 (410)
...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|++.|++.... +.+....++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 7777777777777777765542 11 235666667777777777777777766551 1111245566666
Q ss_pred HHHHccCCHHHHHHHHHHhhhhcCCCCC---hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 040371 150 TACSHCGLVEEGRKYFDHMRSRYSIQPQ---LEHYGAMVDLLGRAGH---IEEAYGLITSMTMEPDVVVWRALLSACRTF 223 (410)
Q Consensus 150 ~a~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~~~~~~li~~~~~~ 223 (410)
..+.+.|++++|...++...+...-..+ ...+..+...|...++ +.+|+..+++.+..|+.
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~------------- 335 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYI------------- 335 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHH-------------
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHH-------------
Confidence 6667777777777777666543111111 2233444444445555 55555555554322211
Q ss_pred CchhHHHHHHHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040371 224 KRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMK 268 (410)
Q Consensus 224 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 268 (410)
...+..+...|.+.|++++|...+++..
T Consensus 336 -----------------~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 336 -----------------EACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp -----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1234456666666677777666666553
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.01 E-value=3.1e-08 Score=92.54 Aligned_cols=156 Identities=8% Similarity=-0.066 Sum_probs=107.2
Q ss_pred HHHHhhCCHHHHHHHHHHHHHcC--CC---ccHHHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC-----hhhHHHH
Q 040371 49 YGCARLGALNHAYWVHNLIIEKK--IE---LNFILSAALIDMYSKCGKIQMAKEVFDTVQR-----ND-----VSVWNAM 113 (410)
Q Consensus 49 ~a~~~~~~~~~a~~~~~~~~~~g--~~---~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~-----~~~~~~l 113 (410)
..+...|+++.|...+..+.+.. .+ ....++..+...|...|+++.|...|++..+ ++ ..+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 34467788888888888887641 11 1245677788888888888888877776531 11 3467778
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc---CCCCChhHHHHHH
Q 040371 114 ISGVAIHGLAADASAIFTKMEMF----NVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRSRY---SIQPQLEHYGAMV 185 (410)
Q Consensus 114 i~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~~li 185 (410)
...|...|++++|++.|++..+. +..+ ...++..+...+...|++++|...|+...+-. +.+....++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 88888888888888888777652 1111 12456677778888888888888888776410 1122255677777
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 040371 186 DLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 186 ~~~~~~g~~~~A~~~~~~m 204 (410)
..|.+.|++++|...+++.
T Consensus 269 ~~~~~~g~~~~A~~~~~~a 287 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEG 287 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 8888888888888887765
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.96 E-value=2.6e-08 Score=89.04 Aligned_cols=174 Identities=13% Similarity=0.072 Sum_probs=117.8
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 040371 60 AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN-----DVSVWNAMISGVAIHGLAADASAIFTKME 134 (410)
Q Consensus 60 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 134 (410)
+...++..+..+ .++......+...|...|++++|++++.+.... +...+-.++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566677666655 445555567888888889999998888876432 45577778888888999999999998887
Q ss_pred HCCCCC-----CHHHHHHHHHHHHc----cCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 040371 135 MFNVLP-----DSITFLGLLTACSH----CGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM- 204 (410)
Q Consensus 135 ~~g~~p-----~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m- 204 (410)
+. .| +..+...+..++.. .++.++|..+|+++.++ .|+..+-..++.++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 73 56 35566666666332 33888889999988754 344333444455788889999998888765
Q ss_pred CC----------CC-CHHHHHHHHHHHHhcCchhHHHHH---HHhhccCCC
Q 040371 205 TM----------EP-DVVVWRALLSACRTFKRLELGEVA---IVNISRLMG 241 (410)
Q Consensus 205 ~~----------~p-~~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~ 241 (410)
.. .| |..+...+|......|+ .|.++ +.+..|.++
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 21 25 44555466655555665 56666 455556554
No 86
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.95 E-value=3.7e-07 Score=84.75 Aligned_cols=267 Identities=10% Similarity=0.035 Sum_probs=179.9
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHcCCCccH----HHHHHHHHHHHhcCCHHHHHHHHHhccc-----CCh----hhHHH
Q 040371 46 SVIYGCARLGALNHAYWVHNLIIEKKIELNF----ILSAALIDMYSKCGKIQMAKEVFDTVQR-----NDV----SVWNA 112 (410)
Q Consensus 46 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~----~~~~~ 112 (410)
.....+...|+++.|...++..+...-..+. .+++.+...|...|++++|...+++... .+. .+++.
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3444566789999999999998876433332 2567778889999999999999987653 222 34667
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC----CCC--CC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhc---CCCCChhHHH
Q 040371 113 MISGVAIHGLAADASAIFTKMEMF----NVL--PD-SITFLGLLTACSHCGLVEEGRKYFDHMRSRY---SIQPQLEHYG 182 (410)
Q Consensus 113 li~~~~~~g~~~~A~~l~~~m~~~----g~~--p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~ 182 (410)
+...+...|++++|...+++.... +.. |. ..++..+...+...|++++|...++...+.. +.......+.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 788899999999999999988653 222 32 3456667788899999999999999877531 1111235677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHH-----HHHHHHhcCchhHHHHHHHhhccCCC-------chHHH
Q 040371 183 AMVDLLGRAGHIEEAYGLITSM----TMEPDVVVWRA-----LLSACRTFKRLELGEVAIVNISRLMG-------GDYVL 246 (410)
Q Consensus 183 ~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~-----li~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~ 246 (410)
.+...+...|++++|...+++. +...+...|.. .+..+...|+++.|...+.+.....+ ..+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 8888999999999999998876 11112122322 23347789999999998554432221 13456
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC----CCcCCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHCCc
Q 040371 247 LSNMYCYLKRWDTAENVREIMKKK----GVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGF 319 (410)
Q Consensus 247 l~~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 319 (410)
+..++...|++++|...++..... |........+.. +...+...|+.++|...+++....-...|+
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~-------la~~~~~~g~~~~A~~~l~~al~~~~~~g~ 328 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL-------LNQLYWQAGRKSDAQRVLLDALKLANRTGF 328 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------HHHHHHHHTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHH-------HHHHHHHhCCHHHHHHHHHHHHHHhccccH
Confidence 788999999999999999877542 211111000100 111223457788888888876666555554
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.91 E-value=1.1e-07 Score=83.78 Aligned_cols=99 Identities=11% Similarity=-0.025 Sum_probs=73.1
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCC--CccHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPD---KFTFASVIYGCARLGALNHAYWVHNLIIEKKI--ELNFILS 79 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~ 79 (410)
+...+-.+...+.+.|++++|+..|+++.+.. +-+ ...+..+..++...|+++.|...++.+++... +....++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45566677778888888888888888887642 222 55777778888888888888888888887632 2235567
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHhccc
Q 040371 80 AALIDMYSK--------CGKIQMAKEVFDTVQR 104 (410)
Q Consensus 80 ~~li~~y~~--------~g~~~~A~~~f~~m~~ 104 (410)
..+...|.+ .|++++|...|++..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFID 125 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 777777877 8888888888887753
No 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.91 E-value=1.1e-07 Score=80.86 Aligned_cols=93 Identities=13% Similarity=0.169 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHHHH----------------HHHHHHhhCCHHHHHHHHHHHHH
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPD-KFTFAS----------------VIYGCARLGALNHAYWVHNLIIE 69 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd-~~t~~~----------------ll~a~~~~~~~~~a~~~~~~~~~ 69 (410)
..+-.....+.+.|++++|+..|++..+. .|+ ...|.. +..++...|++++|...++..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444556677889999999999888764 443 333443 44444444444444444444444
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 040371 70 KKIELNFILSAALIDMYSKCGKIQMAKEVFDTV 102 (410)
Q Consensus 70 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m 102 (410)
.. +.+...+..+...|.+.|++++|...|++.
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 114 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKI 114 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 32 223444444444444444444444444443
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.91 E-value=7.9e-08 Score=97.05 Aligned_cols=165 Identities=11% Similarity=0.033 Sum_probs=96.5
Q ss_pred HhhCCHHHHHHHHHHHH--------HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHc
Q 040371 52 ARLGALNHAYWVHNLII--------EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIH 120 (410)
Q Consensus 52 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 120 (410)
...|++++|.+.+++.+ +. .+.+...+..+...|.+.|++++|...|++..+ .+...|+.+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 45566666666666665 22 133455566666666666666666666665542 2455666666666666
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 040371 121 GLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199 (410)
Q Consensus 121 g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 199 (410)
|++++|++.|++..+. .| +...+..+..++.+.|++++ ...|+...+. -+.+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666553 23 34455566666666666666 6666666532 12234566666666667777777776
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHh
Q 040371 200 LITSM-TMEPD-VVVWRALLSACRT 222 (410)
Q Consensus 200 ~~~~m-~~~p~-~~~~~~li~~~~~ 222 (410)
.|++. ...|+ ...|..+..++..
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHhhcccCcccHHHHHHHHHHHHc
Confidence 66665 44554 3445444444433
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.89 E-value=1.4e-07 Score=73.05 Aligned_cols=124 Identities=15% Similarity=0.125 Sum_probs=61.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHc
Q 040371 44 FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIH 120 (410)
Q Consensus 44 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 120 (410)
|..+...+...|++++|..+++.+.+.. +.+..++..+...|...|++++|...|+++.. .+...|..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4444555555556666665555555543 22444555555555555555555555554431 2334445555555555
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 040371 121 GLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMR 169 (410)
Q Consensus 121 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 169 (410)
|++++|.+.|+++.... +.+..++..+...+...|++++|...|+.+.
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 55555555555554431 1233444444455555555555555555444
No 91
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.88 E-value=1.8e-07 Score=89.72 Aligned_cols=217 Identities=8% Similarity=0.008 Sum_probs=150.3
Q ss_pred HHHHHHHHHHhcC----CHHHHHHHHHhcccCChhhHHHHHHHHHHcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040371 78 LSAALIDMYSKCG----KIQMAKEVFDTVQRNDVSVWNAMISGVAIHG---LAADASAIFTKMEMFNVLPDSITFLGLLT 150 (410)
Q Consensus 78 ~~~~li~~y~~~g----~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 150 (410)
....|..+|...+ ..+++..++......+..++..+...|...| +.++|++.|++..+.| .++...+..+..
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~ 221 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVAR 221 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHH
Confidence 4445555666655 3455666666666677778999999999999 8999999999998876 345554455666
Q ss_pred HHHcc----CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH-H--HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 040371 151 ACSHC----GLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDL-L--GRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTF 223 (410)
Q Consensus 151 a~~~~----g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~ 223 (410)
.|... ++.++|...|+... . | +...+..|..+ | ...+++++|.++|++.-..-+...+..|-..|. .
T Consensus 222 ~y~~g~~~~~d~~~A~~~~~~aa-~-g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~ 295 (452)
T 3e4b_A 222 VLGDATLGTPDEKTAQALLEKIA-P-G---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-E 295 (452)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHG-G-G---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H
T ss_pred HHhCCCCCCCCHHHHHHHHHHHc-C-C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-c
Confidence 66554 78999999999876 2 2 56677777776 4 468899999999998722226666666666665 5
Q ss_pred C-----chhHHHHHHHhhccCCCchHHHHHHHHHh----cCChhHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCC
Q 040371 224 K-----RLELGEVAIVNISRLMGGDYVLLSNMYCY----LKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGD 294 (410)
Q Consensus 224 g-----~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~ 294 (410)
| ++++|...+.+--+.++..+..|..+|.. ..+.++|...|++..+.|... ....+... +..|.
T Consensus 296 G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~----A~~~Lg~~---y~~G~ 368 (452)
T 3e4b_A 296 GKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNS----ADFAIAQL---FSQGK 368 (452)
T ss_dssp CSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTT----HHHHHHHH---HHSCT
T ss_pred CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHH----HHHHHHHH---HHhCC
Confidence 5 89999998544436677788888888877 348999999999988877521 11100000 12333
Q ss_pred CCCccHHHHHHHHH
Q 040371 295 RSHPEAQAIDKILG 308 (410)
Q Consensus 295 ~~~~~~~~~~~~l~ 308 (410)
.......+++..++
T Consensus 369 g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 369 GTKPDPLNAYVFSQ 382 (452)
T ss_dssp TBCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 34456777877776
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.87 E-value=4.6e-07 Score=81.02 Aligned_cols=237 Identities=10% Similarity=-0.024 Sum_probs=163.1
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 040371 13 IGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKI 92 (410)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 92 (410)
|.-..-.|++..++.-..++. ... ....-.-+.+++..+|+++.. ..-.|.......+... ...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~--~~~-~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS--KVT-DNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS--CCC-CHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcC--ccc-hHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc--
Confidence 344455788888887333221 112 223444456778777776532 1123343344444333 3332
Q ss_pred HHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 040371 93 QMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEGRKYFDHM 168 (410)
Q Consensus 93 ~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 168 (410)
|...|++... ++..++..+..+|...|+.++|++++.+-...+..+ +...+...+..+.+.|+.+.|.+.++.|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7788887653 455666788889999999999999999987655322 4566778889999999999999999999
Q ss_pred hhhcCCCC-----ChhHHHHHHHHHH--h--cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHH---h
Q 040371 169 RSRYSIQP-----QLEHYGAMVDLLG--R--AGHIEEAYGLITSM-TMEPDVVVWRALLSACRTFKRLELGEVAIV---N 235 (410)
Q Consensus 169 ~~~~~~~~-----~~~~~~~li~~~~--~--~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~---~ 235 (410)
.+. .| +..+...|..++. . .+++.+|..+|+++ ...|+..+-..++.++...|++++|+..+. +
T Consensus 163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 854 55 2455566665533 2 34899999999999 444664444556668899999999999943 2
Q ss_pred h----------ccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 040371 236 I----------SRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKG 271 (410)
Q Consensus 236 ~----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 271 (410)
. +|.++.+...++..+...|+ +|.++++++++..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 3 36677788778877888887 8899999998764
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.86 E-value=1.9e-07 Score=83.69 Aligned_cols=164 Identities=10% Similarity=-0.033 Sum_probs=122.5
Q ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc--CChhhHHH-HH
Q 040371 38 EPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR--NDVSVWNA-MI 114 (410)
Q Consensus 38 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~-li 114 (410)
+.+...+..+...+...|++++|.+.++++++.. +.+...+..|...|.+.|++++|...|++... |+...+.. ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 4455667777788888999999999999888875 44677888888999999999999999998864 44332222 22
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCH
Q 040371 115 SGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194 (410)
Q Consensus 115 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 194 (410)
..+.+.++.++|+..|++..... +.+...+..+..++...|++++|...|..+.+...-..+...+..+...|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 33666778888888888887752 33567778888888899999999999998886411112256788888888888888
Q ss_pred HHHHHHHHh
Q 040371 195 EEAYGLITS 203 (410)
Q Consensus 195 ~~A~~~~~~ 203 (410)
++|...+++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 888777765
No 94
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.78 E-value=3.7e-07 Score=77.38 Aligned_cols=128 Identities=11% Similarity=-0.024 Sum_probs=109.3
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 040371 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALI 83 (410)
Q Consensus 4 ~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 83 (410)
.+...+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|...++..++.. +.+...+..+.
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg 78 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRG 78 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHH
Confidence 34556777888899999999999999876 46788899999999999999999999999998875 55788899999
Q ss_pred HHHHhcCCHHHHHHHHHhcccC---Ch----------------hhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 040371 84 DMYSKCGKIQMAKEVFDTVQRN---DV----------------SVWNAMISGVAIHGLAADASAIFTKMEMF 136 (410)
Q Consensus 84 ~~y~~~g~~~~A~~~f~~m~~~---~~----------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 136 (410)
.+|.+.|++++|...|++..+. +. ..|..+...|.+.|++++|.+.|++..+.
T Consensus 79 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 79 MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999999999887642 22 67888888999999999999999998874
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.77 E-value=6.2e-07 Score=76.13 Aligned_cols=168 Identities=12% Similarity=-0.028 Sum_probs=115.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHH----------------HHHHHHhcCCHHHHHHHHHhccc--
Q 040371 43 TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAA----------------LIDMYSKCGKIQMAKEVFDTVQR-- 104 (410)
Q Consensus 43 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----------------li~~y~~~g~~~~A~~~f~~m~~-- 104 (410)
.+......+...|++++|...|+..++.. +.+...+.. +...|.+.|++++|...|++..+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 34445566778999999999999998864 334556666 88888999999999999987763
Q ss_pred -CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCC--HHHHHHHHHHhhhhcCCCCChhH
Q 040371 105 -NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGL--VEEGRKYFDHMRSRYSIQPQLEH 180 (410)
Q Consensus 105 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~ 180 (410)
.+...|..+...|...|++++|+..|++..+. .| +..++..+...+...|. .+.+...+.... ...|....
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a 159 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS---SPTKMQYA 159 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh---CCCchhHH
Confidence 36678888888899999999999999988874 34 45667777766655543 333444444432 11222223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 040371 181 YGAMVDLLGRAGHIEEAYGLITSM-TMEPDVVVWRAL 216 (410)
Q Consensus 181 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 216 (410)
+..+..++...|++++|...|++. ...|+......+
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l 196 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 344455666778899999888876 677876554443
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.77 E-value=3.8e-07 Score=92.09 Aligned_cols=181 Identities=13% Similarity=0.009 Sum_probs=144.5
Q ss_pred HHcCCHhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 040371 17 VRNARFDEALRFFREML--------SSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSK 88 (410)
Q Consensus 17 ~~~g~~~~a~~l~~~m~--------~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 88 (410)
...|++++|++.|++.. +. -+.+...+..+..++...|++++|.+.++++++.. +.+...+..+...|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999987 32 23456788888999999999999999999999874 4578899999999999
Q ss_pred cCCHHHHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 040371 89 CGKIQMAKEVFDTVQR--N-DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYF 165 (410)
Q Consensus 89 ~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 165 (410)
.|++++|.+.|++..+ | +...|..+...|.+.|++++ ++.|++..+.. +-+...+..+..++.+.|++++|...|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998763 3 66789999999999999999 99999988753 225677888999999999999999999
Q ss_pred HHhhhhcCCCCC-hhHHHHHHHHHHhcCC--------HHHHHHHHHhC
Q 040371 166 DHMRSRYSIQPQ-LEHYGAMVDLLGRAGH--------IEEAYGLITSM 204 (410)
Q Consensus 166 ~~m~~~~~~~~~-~~~~~~li~~~~~~g~--------~~~A~~~~~~m 204 (410)
+.+.+ +.|+ ...|..+..+|...+. +++|.+.+..+
T Consensus 558 ~~al~---l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 558 DEVPP---TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HTSCT---TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred Hhhcc---cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 98873 3555 5667777777755444 55666666655
No 97
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.76 E-value=1.1e-06 Score=84.08 Aligned_cols=188 Identities=13% Similarity=0.029 Sum_probs=143.1
Q ss_pred cHHHHHHHHHHHHhcC---CHHHHHHHHHhcccC---ChhhHHHHHHHHHHc----CChHHHHHHHHHHHHCCCCCCHHH
Q 040371 75 NFILSAALIDMYSKCG---KIQMAKEVFDTVQRN---DVSVWNAMISGVAIH----GLAADASAIFTKMEMFNVLPDSIT 144 (410)
Q Consensus 75 ~~~~~~~li~~y~~~g---~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~t 144 (410)
++..+..|..+|.+.| +.++|.+.|++..+. +...+..+...|... ++.++|+..|++.. .| +...
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a 250 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPAS 250 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHH
Confidence 3448889999999999 899999999987643 344446677777554 68999999999987 33 3445
Q ss_pred HHHHHHH-H--HccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcC-----CHHHHHHHHHhCCCCCCHHHHHHH
Q 040371 145 FLGLLTA-C--SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAG-----HIEEAYGLITSMTMEPDVVVWRAL 216 (410)
Q Consensus 145 ~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~p~~~~~~~l 216 (410)
+..+... + ...++.++|...|+...+. | +...+..|..+|. .| ++++|.++|++.- .-+...+..|
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~L 324 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYL 324 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHH
Confidence 5555555 3 5689999999999998854 4 6778888888887 55 9999999999987 4466677666
Q ss_pred HHHHHh----cCchhHHHHHHH-hhccCCCchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 040371 217 LSACRT----FKRLELGEVAIV-NISRLMGGDYVLLSNMYCY----LKRWDTAENVREIMKKKGV 272 (410)
Q Consensus 217 i~~~~~----~g~~~~a~~~~~-~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 272 (410)
-..|.. ..++++|...+. ...+.++.....|..+|.. ..+.++|...++...+.|.
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 666654 348899998843 3456677788889999875 4589999999999888775
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.75 E-value=7.5e-07 Score=78.36 Aligned_cols=96 Identities=7% Similarity=-0.110 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHhccc--CC----hhhH
Q 040371 40 DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELN---FILSAALIDMYSKCGKIQMAKEVFDTVQR--ND----VSVW 110 (410)
Q Consensus 40 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~----~~~~ 110 (410)
+...+-.....+...|++++|...|+.+++.. +.+ ...+..+..+|.+.|++++|...|++..+ |+ ..+|
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45566677777778888888888888887763 223 56777778888888888888888887653 21 2356
Q ss_pred HHHHHHHHH--------cCChHHHHHHHHHHHHC
Q 040371 111 NAMISGVAI--------HGLAADASAIFTKMEMF 136 (410)
Q Consensus 111 ~~li~~~~~--------~g~~~~A~~l~~~m~~~ 136 (410)
..+..+|.. .|++++|+..|++....
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 666777777 78888888888887764
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.71 E-value=1.3e-06 Score=74.38 Aligned_cols=171 Identities=9% Similarity=-0.076 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC----CHHHHHHHH
Q 040371 24 EALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCG----KIQMAKEVF 99 (410)
Q Consensus 24 ~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~~A~~~f 99 (410)
+|+..|++..+.| +...+..+...+...+++++|.+.|++..+.| +...+..|..+|.. | +.++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4667777777655 66777777778888888888888888888765 56677777777777 6 788888888
Q ss_pred HhcccC-ChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHc----cCCHHHHHHHHHHhh
Q 040371 100 DTVQRN-DVSVWNAMISGVAI----HGLAADASAIFTKMEMFNVL-PDSITFLGLLTACSH----CGLVEEGRKYFDHMR 169 (410)
Q Consensus 100 ~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~ 169 (410)
++..++ +..++..|...|.. .++.++|++.|++..+.|.. .+...+..|-..|.. .++.++|...|+...
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 877544 56677777777766 67888888888887765432 014566666677766 678888888888877
Q ss_pred hhcCCCCChhHHHHHHHHHHhc-C-----CHHHHHHHHHhC
Q 040371 170 SRYSIQPQLEHYGAMVDLLGRA-G-----HIEEAYGLITSM 204 (410)
Q Consensus 170 ~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m 204 (410)
+. ..+...+..|..+|.+. | ++++|..+|++.
T Consensus 157 ~~---~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 157 SL---SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp HT---SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred Hc---CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 43 23455667777777653 2 778888877765
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.71 E-value=1.5e-06 Score=74.66 Aligned_cols=182 Identities=10% Similarity=-0.042 Sum_probs=109.3
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCc-c-HHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKV-EPD-KFTFASVIYGCARLGALNHAYWVHNLIIEKKIEL-N-FILSA 80 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~-~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~-~~~~~ 80 (410)
+...+..+...+.+.|++++|+..|+++.+... .|. ...+..+..++.+.|+++.|...++.+++..... . ...+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 345566677888999999999999999987421 111 3567778889999999999999999998864221 1 12344
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHhcccCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 040371 81 ALIDMYSK------------------CGKIQMAKEVFDTVQRND---VSVWNAMISGVAIHGLAADASAIFTKMEMFNVL 139 (410)
Q Consensus 81 ~li~~y~~------------------~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 139 (410)
.+...|.+ .|+.++|...|+++.+.+ ..++.+..... .+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~----------~~~~~~~----- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLV----------FLKDRLA----- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH----------HHHHHHH-----
Confidence 44444443 456666666666665421 12222111000 0000000
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 140 PDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ-LEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 140 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
.....+...+.+.|++++|...|+.+.+.+.-.|. ...+..+..+|.+.|++++|.+.++.+
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 01123455666777777777777777754211111 245667777777777777777777765
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.69 E-value=6.4e-07 Score=73.79 Aligned_cols=151 Identities=13% Similarity=0.033 Sum_probs=75.0
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc--CChhhHHHHHHH-HHHcCCh
Q 040371 47 VIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR--NDVSVWNAMISG-VAIHGLA 123 (410)
Q Consensus 47 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~-~~~~g~~ 123 (410)
....+...|++++|...++..++.. +.+...+..+...|.+.|++++|...|++... |+...+..+... +...+..
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~ 90 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAE 90 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhccc
Confidence 3344445555555555555544432 22445555555556666666666666655542 222222111111 1122222
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCC---hhHHHHHHHHHHhcCCHHHHHH
Q 040371 124 ADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ---LEHYGAMVDLLGRAGHIEEAYG 199 (410)
Q Consensus 124 ~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~ 199 (410)
.+|+..|++..+. .| +...+..+...+...|++++|...|+.+.+. .|+ ...+..+...|...|+.++|..
T Consensus 91 ~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 91 SPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKV---NLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp CHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred chHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 3455556555542 23 3455555566666666666666666665532 222 3455666666666666666665
Q ss_pred HHHh
Q 040371 200 LITS 203 (410)
Q Consensus 200 ~~~~ 203 (410)
.|++
T Consensus 166 ~y~~ 169 (176)
T 2r5s_A 166 KYRR 169 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.68 E-value=5.8e-07 Score=81.33 Aligned_cols=16 Identities=13% Similarity=0.133 Sum_probs=12.3
Q ss_pred cCCHhHHHHHHHHHHH
Q 040371 19 NARFDEALRFFREMLS 34 (410)
Q Consensus 19 ~g~~~~a~~l~~~m~~ 34 (410)
.|++++|.+++++..+
T Consensus 4 ~~~~~eA~~~~~~a~k 19 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEK 19 (307)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH
Confidence 5678888888887764
No 103
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.68 E-value=3e-06 Score=84.67 Aligned_cols=229 Identities=11% Similarity=-0.006 Sum_probs=172.5
Q ss_pred hHHHHHHHHHHHcC-------CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHH-HHHHHHHHcCCCccHHH
Q 040371 7 VSWNSMIGGFVRNA-------RFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAY-WVHNLIIEKKIELNFIL 78 (410)
Q Consensus 7 ~~~n~li~~~~~~g-------~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~g~~~~~~~ 78 (410)
..|...|.---.++ ..+.+..+|++.+.. ++-+...|.....-+...|+.+.|. +++++.+.. .+.+..+
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 45777766544433 134466788888875 3557788888888888899999996 999999875 4667888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccc-------------CC------------hhhHHHHHHHHHHcCChHHHHHHHHHH
Q 040371 79 SAALIDMYSKCGKIQMAKEVFDTVQR-------------ND------------VSVWNAMISGVAIHGLAADASAIFTKM 133 (410)
Q Consensus 79 ~~~li~~y~~~g~~~~A~~~f~~m~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m 133 (410)
|-.++...-+.|+++.|+++|+++.. |+ ...|-..+....+.|..+.|..+|.+.
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999998763 21 236888888888899999999999999
Q ss_pred HHC-CCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC--
Q 040371 134 EMF-NVLPDSITFLGLLTACSHC-GLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEP-- 208 (410)
Q Consensus 134 ~~~-g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-- 208 (410)
.+. +. +....|......-.+. ++.+.|..+|+...+.+ +-+...|...++.....|+.+.|..+|++. ...|
T Consensus 461 ~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 461 RRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 875 21 1223343322222333 45999999999998753 335667788999899999999999999997 3333
Q ss_pred --CHHHHHHHHHHHHhcCchhHHHHH---HHhhccCC
Q 040371 209 --DVVVWRALLSACRTFKRLELGEVA---IVNISRLM 240 (410)
Q Consensus 209 --~~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~ 240 (410)
....|...+.--..+|+.+.+..+ +.+..|.+
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 346899999988999999999998 55556655
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.68 E-value=3.6e-06 Score=71.61 Aligned_cols=159 Identities=10% Similarity=-0.016 Sum_probs=132.8
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhC----CHHHHHHHHHHHHHcCCCccHHHH
Q 040371 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG----ALNHAYWVHNLIIEKKIELNFILS 79 (410)
Q Consensus 4 ~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~ 79 (410)
.|..++..|-..|...+++++|+..|++..+.| +...+..+...+.. + ++++|.+.|++..+.| +...+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 467788899999999999999999999998876 56777777777777 6 8999999999998876 67788
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhcccCC-----hhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHH
Q 040371 80 AALIDMYSK----CGKIQMAKEVFDTVQRND-----VSVWNAMISGVAI----HGLAADASAIFTKMEMFNVLPDSITFL 146 (410)
Q Consensus 80 ~~li~~y~~----~g~~~~A~~~f~~m~~~~-----~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~ 146 (410)
..|..+|.. .+++++|.+.|++..+.+ ..+++.|-..|.. .++.++|+..|++..+. .++...+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence 889999987 889999999999887643 5889999999998 88999999999999876 23444566
Q ss_pred HHHHHHHcc-C-----CHHHHHHHHHHhhhh
Q 040371 147 GLLTACSHC-G-----LVEEGRKYFDHMRSR 171 (410)
Q Consensus 147 ~ll~a~~~~-g-----~~~~a~~~~~~m~~~ 171 (410)
.|...|... | +.++|...|+...+.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 666666543 3 899999999998864
No 105
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.67 E-value=1.4e-06 Score=73.80 Aligned_cols=131 Identities=9% Similarity=-0.045 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 040371 78 LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL 157 (410)
Q Consensus 78 ~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 157 (410)
.+..+...|.+.|++++|...|++...++...|..+...|.+.|++++|++.|++..... +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345566777888888888888888877788888888888888888888888888877653 3356677778888888888
Q ss_pred HHHHHHHHHHhhhhcCC-------------CC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 040371 158 VEEGRKYFDHMRSRYSI-------------QP-QLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPD 209 (410)
Q Consensus 158 ~~~a~~~~~~m~~~~~~-------------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 209 (410)
+++|...|+...+...- .| ....+..+...|.+.|++++|...|++. ...|+
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 88888888887753111 11 1256677777777777777777777765 44443
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.67 E-value=1e-06 Score=86.89 Aligned_cols=150 Identities=10% Similarity=-0.036 Sum_probs=110.2
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 040371 19 NARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEV 98 (410)
Q Consensus 19 ~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 98 (410)
.|++++|++.|++..+.. +-+...+..+..++...|++++|.+.+++.++.. +.+...+..+...|.+.|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999887642 3357788889999999999999999999998874 44688899999999999999999999
Q ss_pred HHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHhhhh
Q 040371 99 FDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHC---GLVEEGRKYFDHMRSR 171 (410)
Q Consensus 99 f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~---g~~~~a~~~~~~m~~~ 171 (410)
|++..+ .+...|..+...|.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.++...+.
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 987753 356788899999999999999999999988753 23567788888888888 9999999999988754
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.66 E-value=8.8e-07 Score=79.34 Aligned_cols=169 Identities=10% Similarity=-0.015 Sum_probs=105.8
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc
Q 040371 94 MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRSRY 172 (410)
Q Consensus 94 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 172 (410)
.....+......+...+..+...+.+.|++++|...|++.... .| +...+..+...+...|++++|...++.+...
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 3344444444334455666666677777777777777777664 33 4456666777777777777777777776543
Q ss_pred CCCCChhHHHHH-HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHH---HHhhccCC--CchH
Q 040371 173 SIQPQLEHYGAM-VDLLGRAGHIEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRLELGEVA---IVNISRLM--GGDY 244 (410)
Q Consensus 173 ~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~--~~~~ 244 (410)
.|+....... ...+.+.++.++|...+++. ...| +...+..+...+...|++++|... ..+..|.+ ...+
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 3443322222 22355556666666666655 3334 456677777777777777777777 34445555 5567
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 040371 245 VLLSNMYCYLKRWDTAENVREIM 267 (410)
Q Consensus 245 ~~l~~~~~~~g~~~~a~~~~~~m 267 (410)
..|+.+|...|+.++|...+++-
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHH
Confidence 78888888888888887777653
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.65 E-value=1e-06 Score=79.68 Aligned_cols=182 Identities=10% Similarity=-0.066 Sum_probs=98.4
Q ss_pred HHHHhhCCHHHHHHHHHHHHHc----CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhccc-------C--ChhhHHHHH
Q 040371 49 YGCARLGALNHAYWVHNLIIEK----KIEL-NFILSAALIDMYSKCGKIQMAKEVFDTVQR-------N--DVSVWNAMI 114 (410)
Q Consensus 49 ~a~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~--~~~~~~~li 114 (410)
..+...|++++|...|.+..+. +-.+ -..+++.+...|.+.|++++|...|++..+ + -..+|+.+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566666666666655443 1111 134556666666666666666666654321 1 123566666
Q ss_pred HHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc---CCCCC-hhHHHHHH
Q 040371 115 SGVAIHGLAADASAIFTKMEMF----NVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRSRY---SIQPQ-LEHYGAMV 185 (410)
Q Consensus 115 ~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~~~-~~~~~~li 185 (410)
..|.. |++++|+..|++.... |..+ ...++..+...+...|++++|...|+...+.. +..+. ...+..+.
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 66666 7777777777665542 1100 12456666677777777777777777665421 11111 22555666
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCchhHHHHH
Q 040371 186 DLLGRAGHIEEAYGLITSMTMEPD------VVVWRALLSACRTFKRLELGEVA 232 (410)
Q Consensus 186 ~~~~~~g~~~~A~~~~~~m~~~p~------~~~~~~li~~~~~~g~~~~a~~~ 232 (410)
..+...|++++|...|++.-..|+ ......++.++ ..|+.+....+
T Consensus 203 ~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 666667777777777766422231 12334444444 45666655553
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.63 E-value=2e-06 Score=73.90 Aligned_cols=178 Identities=11% Similarity=-0.045 Sum_probs=114.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhccc--CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----H
Q 040371 75 NFILSAALIDMYSKCGKIQMAKEVFDTVQR--ND----VSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSI----T 144 (410)
Q Consensus 75 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t 144 (410)
+...+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|++..+. .|+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHH
Confidence 345566677788889999999999998764 32 246777888899999999999999998874 33321 3
Q ss_pred HHHHHHHHHc------------------cCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 040371 145 FLGLLTACSH------------------CGLVEEGRKYFDHMRSRYSIQPQ-LEHYGAMVDLLGRAGHIEEAYGLITSMT 205 (410)
Q Consensus 145 ~~~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 205 (410)
+..+..++.. .|+.++|...|+.+.+. .|+ ...+.+..... ......
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~------- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL------- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH-------
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH-------
Confidence 3333344433 45667777777776643 222 22222111100 000000
Q ss_pred CCCCHHHHHHHHHHHHhcCchhHHHHH---HHhhccCCC---chHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 040371 206 MEPDVVVWRALLSACRTFKRLELGEVA---IVNISRLMG---GDYVLLSNMYCYLKRWDTAENVREIMKKKGV 272 (410)
Q Consensus 206 ~~p~~~~~~~li~~~~~~g~~~~a~~~---~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 272 (410)
......+...+...|+++.|... +.+..|.++ ..+..+..+|.+.|++++|.+.++.+...+.
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00112344557788888888888 444556554 4577889999999999999999999888754
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.62 E-value=3.4e-07 Score=75.50 Aligned_cols=161 Identities=6% Similarity=-0.048 Sum_probs=123.7
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH-
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM- 85 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~- 85 (410)
..+..+...+.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...++.+.+... +......+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHH
Confidence 345667788999999999999999887642 33677899999999999999999999999877542 44444333222
Q ss_pred HHhcCCHHHHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHH
Q 040371 86 YSKCGKIQMAKEVFDTVQR--N-DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEG 161 (410)
Q Consensus 86 y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 161 (410)
+.+.+....|...|++..+ | +...|..+...|...|++++|...|++..+....+ +...+..+...+...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2232333456778877653 3 57889999999999999999999999998864332 355788889999999999999
Q ss_pred HHHHHHhhh
Q 040371 162 RKYFDHMRS 170 (410)
Q Consensus 162 ~~~~~~m~~ 170 (410)
...|+....
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987653
No 111
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.61 E-value=1.9e-06 Score=65.59 Aligned_cols=96 Identities=16% Similarity=0.217 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM 85 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 85 (410)
...|..+...|.+.|++++|++.|+++.... +.+..++..+..++...|++++|...++.+.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4566667777777777777777777766542 3345556666666666666666666666666543 3345555555666
Q ss_pred HHhcCCHHHHHHHHHhcc
Q 040371 86 YSKCGKIQMAKEVFDTVQ 103 (410)
Q Consensus 86 y~~~g~~~~A~~~f~~m~ 103 (410)
|.+.|++++|...|+++.
T Consensus 87 ~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH
Confidence 666666666666655543
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.57 E-value=1.1e-07 Score=76.32 Aligned_cols=113 Identities=8% Similarity=-0.119 Sum_probs=70.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCC
Q 040371 82 LIDMYSKCGKIQMAKEVFDTVQRN---DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGL 157 (410)
Q Consensus 82 li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 157 (410)
|..+|...|++++|+..|+..... +...|..+...|.+.|++++|++.|++..+. .| +..++..+...+...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCc
Confidence 344555667777777777665543 3345666677777777777777777777663 33 45566667777777777
Q ss_pred HHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHH
Q 040371 158 VEEGRKYFDHMRSRYSIQP-QLEHYGAMVDLLGRAGHIEEAYG 199 (410)
Q Consensus 158 ~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 199 (410)
+++|...|+...+. .| +...|..+...|.+.|++++|.+
T Consensus 81 ~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~aa~ 120 (150)
T 4ga2_A 81 TDKAVECYRRSVEL---NPTQKDLVLKIAELLCKNDVTDGRAK 120 (150)
T ss_dssp HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred hHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 77777777776642 33 35566666666777776655443
No 113
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.56 E-value=4.4e-06 Score=74.86 Aligned_cols=164 Identities=12% Similarity=-0.045 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcc-----HHHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC----
Q 040371 41 KFTFASVIYGCARLGALNHAYWVHNLIIEKKIELN-----FILSAALIDMYSKCGKIQMAKEVFDTVQR-----ND---- 106 (410)
Q Consensus 41 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~---- 106 (410)
...+...+..+...|++++|.+.+...++...... ...+..+...|...|++++|...|++..+ .+
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 44566667777777888888777777766432211 12344566667777888888888776532 11
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHhhhh---cCCCCC
Q 040371 107 VSVWNAMISGVAIHGLAADASAIFTKMEMF-NVLPD-----SITFLGLLTACSHCGLVEEGRKYFDHMRSR---YSIQPQ 177 (410)
Q Consensus 107 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~~~ 177 (410)
..+|+.+...|...|++++|+..|++.... ...|+ ..++..+...|...|++++|..+++...+- .+....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 347777888888888888888888877621 01112 146777788888888888888888876532 111111
Q ss_pred -hhHHHHHHHHHHhcCCHHHH-HHHHHhC
Q 040371 178 -LEHYGAMVDLLGRAGHIEEA-YGLITSM 204 (410)
Q Consensus 178 -~~~~~~li~~~~~~g~~~~A-~~~~~~m 204 (410)
..+|..+...|.+.|++++| ...+++.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 45677888888888888888 5555543
No 114
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.56 E-value=3.5e-06 Score=67.87 Aligned_cols=125 Identities=11% Similarity=0.073 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMY 86 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 86 (410)
..|..+...+...|++++|+..|++..+.. +.+..++..+..++...|++++|...+...++.. +.+..++..+...|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456666777777777777777777766542 3345566666666677777777777777666653 33455666666666
Q ss_pred HhcCCHHHHHHHHHhccc--C-ChhhHHHH--HHHHHHcCChHHHHHHHHHH
Q 040371 87 SKCGKIQMAKEVFDTVQR--N-DVSVWNAM--ISGVAIHGLAADASAIFTKM 133 (410)
Q Consensus 87 ~~~g~~~~A~~~f~~m~~--~-~~~~~~~l--i~~~~~~g~~~~A~~l~~~m 133 (410)
.+.|++++|...|++..+ | +...|..+ ...+...|++++|++.+.+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666665542 1 23333222 22244555566666555543
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.56 E-value=1.4e-06 Score=85.91 Aligned_cols=147 Identities=8% Similarity=-0.010 Sum_probs=98.9
Q ss_pred hCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHH
Q 040371 54 LGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIF 130 (410)
Q Consensus 54 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 130 (410)
.|++++|.+.++++++.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 367788888888877653 34577888888888888888888888887654 25667888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 040371 131 TKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRA---GHIEEAYGLITSM 204 (410)
Q Consensus 131 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m 204 (410)
++..+.. +.+...+..+..++...|++++|.+.|+...+. -+.+...+..+...|... |++++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8887742 224667777888888888888888888887753 123466777888888888 8888888888776
No 116
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.56 E-value=3.4e-07 Score=73.42 Aligned_cols=118 Identities=8% Similarity=-0.096 Sum_probs=72.7
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH
Q 040371 15 GFVRNARFDEALRFFREMLSSKVEP-DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQ 93 (410)
Q Consensus 15 ~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 93 (410)
.+...|++++|++.|++.... .| +...+..+...+...|++++|.+.+++.++.. +.+..++..+..+|.+.|+++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 344456677777777665432 23 23345556666777777777777777776664 345666777777777777777
Q ss_pred HHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHH-HHHHHH
Q 040371 94 MAKEVFDTVQR--N-DVSVWNAMISGVAIHGLAADASAI-FTKMEM 135 (410)
Q Consensus 94 ~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l-~~~m~~ 135 (410)
+|...|++..+ | +..+|..+...|.+.|+.++|.+. +++..+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 77777766542 2 455666666667666766655544 355544
No 117
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.54 E-value=2.4e-06 Score=75.32 Aligned_cols=198 Identities=11% Similarity=-0.011 Sum_probs=139.2
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhhCCHHHHHHHHHHHHH------------cCC---
Q 040371 15 GFVRNARFDEALRFFREMLSSKVEPDKFTFASV-------IYGCARLGALNHAYWVHNLIIE------------KKI--- 72 (410)
Q Consensus 15 ~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~l-------l~a~~~~~~~~~a~~~~~~~~~------------~g~--- 72 (410)
++ +.++..+|.+.|.+..+.. +-....|..+ ..++.+.+...++...+...++ .|+
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred cc-cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence 45 6899999999999998753 2245677776 4555555554444444444433 121
Q ss_pred -----CccHHHHHHHHHHHHhcCCHHHHHHHHHhccc--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HH
Q 040371 73 -----ELNFILSAALIDMYSKCGKIQMAKEVFDTVQR--NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD--SI 143 (410)
Q Consensus 73 -----~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ 143 (410)
..-..+.-.+..++...|++++|.++|+.+.. |+-.....+...+.+.+++++|+..|+...... .|. ..
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 01134556778889999999999999999864 433366667778899999999999998554321 121 23
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 040371 144 TFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ--LEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDVVVWRAL 216 (410)
Q Consensus 144 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 216 (410)
.+..+-.++...|++++|+..|++.... ...|. .........++.+.|+.++|..+|+++ ...|+...+..|
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL 247 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 5777888999999999999999998742 33254 346677788899999999999999998 456774444433
No 118
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.50 E-value=0.00011 Score=65.97 Aligned_cols=180 Identities=8% Similarity=-0.022 Sum_probs=109.5
Q ss_pred HcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHcCCCccHHHHHHHHHHH----Hhc-
Q 040371 18 RNARFDEALRFFREMLSSKVEP-DKFTFASVIYGCARLG--ALNHAYWVHNLIIEKKIELNFILSAALIDMY----SKC- 89 (410)
Q Consensus 18 ~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~~~- 89 (410)
+....++|++++.+++.. .| +...|+.--.++...+ +++++.++++.++... +.+..+|+.--..+ .+.
T Consensus 45 ~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 45 AEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 334456788888888764 34 4456777667777777 7888888888887764 34555665544444 444
Q ss_pred --CCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----
Q 040371 90 --GKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAA--DASAIFTKMEMFNVLPDSITFLGLLTACSHCGL----- 157 (410)
Q Consensus 90 --g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~----- 157 (410)
++++++..+++++.+ +|-.+|+--.-.+.+.|.++ ++++.++++.+... -|...++.-.....+.+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhh
Confidence 677777777777764 35566666666666677776 77777777776532 245555554444455444
Q ss_pred -HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH-HHHHHHh
Q 040371 158 -VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE-AYGLITS 203 (410)
Q Consensus 158 -~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~ 203 (410)
++++.+.++.+... -+-|...|+-+-..+.+.|+..+ +..+..+
T Consensus 201 ~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~ 246 (306)
T 3dra_A 201 TIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQ 246 (306)
T ss_dssp HHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred hHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 56666666665532 12345566666666666555332 3334444
No 119
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.50 E-value=3.7e-05 Score=69.07 Aligned_cols=210 Identities=12% Similarity=0.127 Sum_probs=161.6
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC--CHHHHHHHHHhccc---CChhhHHHHHHHH----HHc---CCh
Q 040371 56 ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCG--KIQMAKEVFDTVQR---NDVSVWNAMISGV----AIH---GLA 123 (410)
Q Consensus 56 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~f~~m~~---~~~~~~~~li~~~----~~~---g~~ 123 (410)
..++|.+..+.++..+ +-+..+|+.--......| ++++++++++.+.. .+..+|+.--..+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 4468999999999875 456788998888888888 99999999998874 3556777765555 555 789
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH--HHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC------HH
Q 040371 124 ADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVE--EGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGH------IE 195 (410)
Q Consensus 124 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~------~~ 195 (410)
++++++++++.+.. +-|...+..-.-...+.|.++ ++.++++.+.+. . .-|-..|+.-...+.+.|. ++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-D-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 99999999999853 336777877777777888888 999999999864 2 3356677766666777776 88
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhH-HHHHHH---hhc---cCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 040371 196 EAYGLITSM-TMEP-DVVVWRALLSACRTFKRLEL-GEVAIV---NIS---RLMGGDYVLLSNMYCYLKRWDTAENVREI 266 (410)
Q Consensus 196 ~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~-a~~~~~---~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 266 (410)
++++.++++ ...| |...|+-+-..+...|+... ...+.. ... +.++.....+..+|.+.|+.++|.++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 899888876 4445 78889888888888877444 333422 233 55666788899999999999999999999
Q ss_pred HHh
Q 040371 267 MKK 269 (410)
Q Consensus 267 m~~ 269 (410)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
No 120
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.48 E-value=4.3e-06 Score=64.47 Aligned_cols=115 Identities=7% Similarity=-0.025 Sum_probs=82.2
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 84 (410)
+...|..+...|.+.|++++|+..|++..+.. +.+...+..+..++...|++++|.+.++.+.+.. +.+..++..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 45678888888888888888888888887642 3366677777788888888888888888887764 345677777777
Q ss_pred HHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcC
Q 040371 85 MYSKCGKIQMAKEVFDTVQRN---DVSVWNAMISGVAIHG 121 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g 121 (410)
.|.+.|++++|.+.|++..+. +...|..+...+.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 788888888888877765432 3345555555554443
No 121
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.47 E-value=2.6e-06 Score=71.26 Aligned_cols=116 Identities=12% Similarity=0.003 Sum_probs=56.8
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHc----CCC-ccHHHHHHHHHHHHhcCC
Q 040371 17 VRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEK----KIE-LNFILSAALIDMYSKCGK 91 (410)
Q Consensus 17 ~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~y~~~g~ 91 (410)
...|++++|.+.++..... ......++..+...+...|+++.|...+++.++. +.. ....+++.+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3567777777744444321 1223446666666666667777776666665542 111 123445555555666666
Q ss_pred HHHHHHHHHhccc-----C-C----hhhHHHHHHHHHHcCChHHHHHHHHHH
Q 040371 92 IQMAKEVFDTVQR-----N-D----VSVWNAMISGVAIHGLAADASAIFTKM 133 (410)
Q Consensus 92 ~~~A~~~f~~m~~-----~-~----~~~~~~li~~~~~~g~~~~A~~l~~~m 133 (410)
+++|...|++... + + ..+++.+...|...|++++|...|++.
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6665555554321 1 1 123444444444455555555555444
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.47 E-value=2.2e-06 Score=76.50 Aligned_cols=97 Identities=6% Similarity=-0.036 Sum_probs=58.7
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 84 (410)
+...|..+...|.+.|++++|+..|++..... +.+...|..+..++...|++++|...++..++.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556666666667777777777776666532 2245566666666666666666666666666543 334555666666
Q ss_pred HHHhcCCHHHHHHHHHhcc
Q 040371 85 MYSKCGKIQMAKEVFDTVQ 103 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~ 103 (410)
+|.+.|++++|...|++..
T Consensus 81 ~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 6666666666666665543
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.47 E-value=9.1e-06 Score=72.76 Aligned_cols=163 Identities=10% Similarity=-0.064 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHcC-CCccH----HHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC----h
Q 040371 42 FTFASVIYGCARLGALNHAYWVHNLIIEKK-IELNF----ILSAALIDMYSKCGKIQMAKEVFDTVQR-----ND----V 107 (410)
Q Consensus 42 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~----~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~----~ 107 (410)
..+...+..+...|+++.|..+++...+.. ..|+. ..+..+...|...|++++|...|++... .+ .
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 344444555566666666666666655532 12221 1233455555566666666666665432 12 1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhh---cCCCCC-
Q 040371 108 SVWNAMISGVAIHGLAADASAIFTKMEMF-----NVLPD-SITFLGLLTACSHCGLVEEGRKYFDHMRSR---YSIQPQ- 177 (410)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~~~- 177 (410)
.+|+.+...|...|++++|+..|++..+. +..|. ..++..+...|.+.|++++|..+++...+- .+..+.
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 24666666666666666666666666531 11222 225566666666777777777766665431 122222
Q ss_pred hhHHHHHHHHHHhcCC-HHHHHHHHHhC
Q 040371 178 LEHYGAMVDLLGRAGH-IEEAYGLITSM 204 (410)
Q Consensus 178 ~~~~~~li~~~~~~g~-~~~A~~~~~~m 204 (410)
...|..+...|.+.|+ +++|.+.+++.
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 4566666667777773 46665555543
No 124
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.45 E-value=7.7e-06 Score=62.63 Aligned_cols=115 Identities=10% Similarity=0.007 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM 85 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 85 (410)
...|..+...+...|++++|+..|++..... +.+...+..+..++...|++++|.+.+....+.. +.+..++..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 4466677777777777777777777776542 3355666667777777777777777777776653 3345666666666
Q ss_pred HHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCC
Q 040371 86 YSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGL 122 (410)
Q Consensus 86 y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~ 122 (410)
|.+.|++++|...|++..+ .+...|..+...+.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 7777777777776665542 244455555555555544
No 125
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.44 E-value=6.7e-06 Score=68.71 Aligned_cols=152 Identities=13% Similarity=0.045 Sum_probs=109.8
Q ss_pred HhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc------C---ChhhHHHHHHHHHHcCC
Q 040371 52 ARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR------N---DVSVWNAMISGVAIHGL 122 (410)
Q Consensus 52 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~------~---~~~~~~~li~~~~~~g~ 122 (410)
...|++++|.++++.+.. .......+++.+...|...|++++|...|++... . ...+++.+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 457889999986655543 2234678889999999999999999999987653 1 34578888889999999
Q ss_pred hHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHhcC
Q 040371 123 AADASAIFTKMEMF----NVLP--DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ----LEHYGAMVDLLGRAG 192 (410)
Q Consensus 123 ~~~A~~l~~~m~~~----g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g 192 (410)
+++|...|++.... +-.| ....+..+...+...|++++|...+++..+...-..+ ...+..+...|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999887653 2122 1345777888888999999999999887642111112 234678888899999
Q ss_pred CHHHHHHHHHhC
Q 040371 193 HIEEAYGLITSM 204 (410)
Q Consensus 193 ~~~~A~~~~~~m 204 (410)
++++|.+.+++.
T Consensus 162 ~~~~A~~~~~~a 173 (203)
T 3gw4_A 162 NLLEAQQHWLRA 173 (203)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999998887765
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.42 E-value=5.6e-05 Score=67.53 Aligned_cols=120 Identities=14% Similarity=0.003 Sum_probs=58.9
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-------C-CCC-HHHHHH
Q 040371 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQ----LEHYGAMVDLLGRAGHIEEAYGLITSMT-------M-EPD-VVVWRA 215 (410)
Q Consensus 149 l~a~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~-~p~-~~~~~~ 215 (410)
...+...|++++|...|+...+...-.++ ...++.+...|...|++++|...|++.- . .+. ..++..
T Consensus 122 ~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~n 201 (293)
T 3u3w_A 122 AAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN 201 (293)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred HHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Confidence 33334444555555555554431111111 1134555555555555555555444430 0 111 124445
Q ss_pred HHHHHHhcCchhHHHHHH---HhhccC------CCchHHHHHHHHHhcCC-hhHHHHHHHHHH
Q 040371 216 LLSACRTFKRLELGEVAI---VNISRL------MGGDYVLLSNMYCYLKR-WDTAENVREIMK 268 (410)
Q Consensus 216 li~~~~~~g~~~~a~~~~---~~~~~~------~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~ 268 (410)
+...|...|++++|...+ .++.+. -..+|..+..+|.+.|+ +++|.+.+++..
T Consensus 202 lg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 555555555555555551 111111 13467778888888884 588888877654
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.39 E-value=8.1e-06 Score=65.71 Aligned_cols=89 Identities=7% Similarity=-0.025 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 040371 80 AALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCG 156 (410)
Q Consensus 80 ~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 156 (410)
..+...|...|++++|...|++... .+..+|..+...|...|++++|+..|++..... +.+...+..+..++...|
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~ 95 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 95 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 3333444444444444444443321 133344444444444444444444444444321 112333444444444444
Q ss_pred CHHHHHHHHHHhh
Q 040371 157 LVEEGRKYFDHMR 169 (410)
Q Consensus 157 ~~~~a~~~~~~m~ 169 (410)
++++|...|+...
T Consensus 96 ~~~~A~~~~~~a~ 108 (166)
T 1a17_A 96 KFRAALRDYETVV 108 (166)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 4444444444444
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.39 E-value=2e-05 Score=70.52 Aligned_cols=26 Identities=12% Similarity=-0.011 Sum_probs=18.2
Q ss_pred chHHHHHHHHHhcCChhHH-HHHHHHH
Q 040371 242 GDYVLLSNMYCYLKRWDTA-ENVREIM 267 (410)
Q Consensus 242 ~~~~~l~~~~~~~g~~~~a-~~~~~~m 267 (410)
.+|..+..+|.+.|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3566677788888888888 6656554
No 129
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.39 E-value=3.5e-06 Score=69.11 Aligned_cols=118 Identities=12% Similarity=0.129 Sum_probs=85.0
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH-HHhcCCH--H
Q 040371 17 VRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM-YSKCGKI--Q 93 (410)
Q Consensus 17 ~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-y~~~g~~--~ 93 (410)
...|++++|+..|++..... +.+...|..+..++...|+++.|...++.+++.. +.+..++..+..+ |.+.|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45677888888888877643 3466778888888888888888888888887764 3466677777777 7778887 8
Q ss_pred HHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 040371 94 MAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMF 136 (410)
Q Consensus 94 ~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 136 (410)
+|...|++... .+...|..+...|...|++++|...|++....
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888877653 24567777777888888888888888887764
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.38 E-value=1.5e-05 Score=60.33 Aligned_cols=93 Identities=16% Similarity=0.104 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHH
Q 040371 42 FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVA 118 (410)
Q Consensus 42 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~ 118 (410)
..+..+...+...|+++.|.+.++.+.+.. +.+..++..+...|.+.|++++|...|+++.. .+..+|..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 345555555555666666666665555543 23444555555555555555555555554432 23444555555555
Q ss_pred HcCChHHHHHHHHHHHH
Q 040371 119 IHGLAADASAIFTKMEM 135 (410)
Q Consensus 119 ~~g~~~~A~~l~~~m~~ 135 (410)
..|++++|...|+++..
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 55555555555555544
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.38 E-value=4.7e-06 Score=66.79 Aligned_cols=123 Identities=12% Similarity=0.023 Sum_probs=97.0
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 040371 9 WNSMIGGFVRNARFDEALRFFREMLSSKVEP-DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYS 87 (410)
Q Consensus 9 ~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 87 (410)
.+.+.......+.++++++ +.| +...+..+..++.+.|++++|...|+++++.. +.+...|..+..+|.
T Consensus 12 ~~~l~~~~~~~~~l~~al~---------l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~ 81 (151)
T 3gyz_A 12 STAVIDAINSGATLKDINA---------IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQ 81 (151)
T ss_dssp HHHHHHHHHTSCCTGGGCC---------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHhC---------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3555555555555544432 345 34577888888999999999999999999875 557889999999999
Q ss_pred hcCCHHHHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 040371 88 KCGKIQMAKEVFDTVQR--N-DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSI 143 (410)
Q Consensus 88 ~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 143 (410)
+.|++++|...|++... | +...|..+..+|.+.|++++|+..|++..+. .||..
T Consensus 82 ~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 82 IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 99999999999998753 3 6778999999999999999999999999874 45543
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.37 E-value=9.7e-06 Score=62.66 Aligned_cols=91 Identities=14% Similarity=-0.004 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHc
Q 040371 44 FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIH 120 (410)
Q Consensus 44 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 120 (410)
+......+.+.|++++|.+.|++.++.. +.+..++..+..+|.+.|++++|+..|++..+ .+...|..+..+|...
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3334444444444444444444444432 22344444444444444444444444443321 2233444444444444
Q ss_pred CChHHHHHHHHHHHH
Q 040371 121 GLAADASAIFTKMEM 135 (410)
Q Consensus 121 g~~~~A~~l~~~m~~ 135 (410)
|++++|++.|++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
No 133
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.37 E-value=1.3e-05 Score=61.90 Aligned_cols=105 Identities=7% Similarity=0.051 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMY 86 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 86 (410)
..|...-..|.+.|++++|++.|++.++.. +.+...|..+..++...|++++|.+.+++.++.. +.+...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 468888999999999999999999998753 4478899999999999999999999999999975 55788999999999
Q ss_pred HhcCCHHHHHHHHHhccc--C-ChhhHHHH
Q 040371 87 SKCGKIQMAKEVFDTVQR--N-DVSVWNAM 113 (410)
Q Consensus 87 ~~~g~~~~A~~~f~~m~~--~-~~~~~~~l 113 (410)
.+.|++++|.+.|++..+ | +...+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 999999999999998763 3 34444443
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.36 E-value=1e-05 Score=74.17 Aligned_cols=125 Identities=13% Similarity=-0.052 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcc--------------HHHHHHHHHHHHhcCCHHHHHHHHHhccc---C
Q 040371 43 TFASVIYGCARLGALNHAYWVHNLIIEKKIELN--------------FILSAALIDMYSKCGKIQMAKEVFDTVQR---N 105 (410)
Q Consensus 43 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--------------~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~ 105 (410)
.+..+...+.+.|++++|...|++.++...... ..++..+..+|.+.|++++|...|++..+ .
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 444444444444444444444444444321111 35566666666666666666666665542 2
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHH-HHHHHHhh
Q 040371 106 DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEG-RKYFDHMR 169 (410)
Q Consensus 106 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a-~~~~~~m~ 169 (410)
+..+|..+..+|...|++++|+..|++..+. .| +...+..+..++...|+.+++ ...+..|.
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666666553 23 344555555566666666655 33444443
No 135
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.36 E-value=2.3e-05 Score=78.31 Aligned_cols=213 Identities=7% Similarity=-0.005 Sum_probs=156.6
Q ss_pred ChhHHHHHHHHHHHcCCHhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcC----------CC
Q 040371 5 DVVSWNSMIGGFVRNARFDEAL-RFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKK----------IE 73 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~-~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g----------~~ 73 (410)
+...|-..+.-+.+.|+.++|. ++|++.... ++.+...|...+...-+.|+++.|+++|+.+++.. .+
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 3456777777788889999997 999999864 45566677788888889999999999999998742 12
Q ss_pred c-----------cHHHHHHHHHHHHhcCCHHHHHHHHHhcccC-Ch---hhHHHHHHHHHHc-CChHHHHHHHHHHHHCC
Q 040371 74 L-----------NFILSAALIDMYSKCGKIQMAKEVFDTVQRN-DV---SVWNAMISGVAIH-GLAADASAIFTKMEMFN 137 (410)
Q Consensus 74 ~-----------~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-~~---~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g 137 (410)
. ...+|...+....+.|.++.|+++|.+..+. .. ..|-..+..-.+. ++.+.|..+|+...+.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~- 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY- 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-
Confidence 1 2457889999999999999999999987643 22 2332222222233 4589999999998875
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH
Q 040371 138 VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP--QLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDVVVWR 214 (410)
Q Consensus 138 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~ 214 (410)
.+-+...+...+......|+.+.|+.+|+..... ...+ ....|...++.-.+.|..+.+.++.+++ ...|+.....
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~-~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~ 578 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNEESQVKSLFESSIDK-ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLE 578 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT-SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHH
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHH
Confidence 3334555567777777889999999999998853 2111 3468999999999999999999999998 3345544444
Q ss_pred HHHHHH
Q 040371 215 ALLSAC 220 (410)
Q Consensus 215 ~li~~~ 220 (410)
.++.-|
T Consensus 579 ~f~~ry 584 (679)
T 4e6h_A 579 EFTNKY 584 (679)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 444444
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.30 E-value=1.2e-05 Score=64.44 Aligned_cols=100 Identities=9% Similarity=-0.015 Sum_probs=83.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 040371 75 NFILSAALIDMYSKCGKIQMAKEVFDTVQR--N-DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLT 150 (410)
Q Consensus 75 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~ 150 (410)
+...+..+...|.+.|++++|...|++... | +...|..+..+|...|++++|+..|++.... .| +...+..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHH
Confidence 466788888899999999999999998763 3 6778999999999999999999999999874 34 4677888889
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCCCChh
Q 040371 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLE 179 (410)
Q Consensus 151 a~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 179 (410)
++...|++++|...|+...+. .|+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l---~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH---SNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCHH
Confidence 999999999999999998854 45554
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.30 E-value=3.2e-06 Score=75.43 Aligned_cols=95 Identities=9% Similarity=-0.145 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHH
Q 040371 40 DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISG 116 (410)
Q Consensus 40 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~ 116 (410)
+...+..+...+...|++++|...+...++.. +.+...+..+...|.+.|++++|...|++..+ .+...|+.+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34455666666666667777766666666653 33556666666666666666666666665543 234556666666
Q ss_pred HHHcCChHHHHHHHHHHHH
Q 040371 117 VAIHGLAADASAIFTKMEM 135 (410)
Q Consensus 117 ~~~~g~~~~A~~l~~~m~~ 135 (410)
|...|++++|+..|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666554
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.27 E-value=2e-05 Score=60.18 Aligned_cols=114 Identities=9% Similarity=-0.085 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040371 77 ILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153 (410)
Q Consensus 77 ~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 153 (410)
..+..+...+...|++++|...|++... .+...|..+...|...|++++|++.+++..... +.+...+..+...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 3444444555555555555555554331 233445555555555555555555555554431 112344444555555
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC
Q 040371 154 HCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGH 193 (410)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 193 (410)
..|++++|...|+...+. -+.+...+..+...+.+.|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhc
Confidence 555555555555555432 11133444444444444443
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.25 E-value=1e-05 Score=64.55 Aligned_cols=91 Identities=11% Similarity=0.013 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 040371 78 LSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSH 154 (410)
Q Consensus 78 ~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 154 (410)
.+..+...+.+.|++++|...|++... .+...|..+..+|.+.|++++|+..|++..... +.+...+..+..++..
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 333444444444444444444444321 133344444444444444444444444444321 1123334444444444
Q ss_pred cCCHHHHHHHHHHhh
Q 040371 155 CGLVEEGRKYFDHMR 169 (410)
Q Consensus 155 ~g~~~~a~~~~~~m~ 169 (410)
.|++++|...|+...
T Consensus 102 ~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 102 XGELAEAESGLFLAQ 116 (148)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 444444444444443
No 140
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.24 E-value=1.6e-05 Score=63.33 Aligned_cols=106 Identities=9% Similarity=-0.011 Sum_probs=77.9
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc--
Q 040371 28 FFREMLSSKVEP-DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR-- 104 (410)
Q Consensus 28 l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-- 104 (410)
.|++... +.| +...+..+...+...|++++|...|+.+++.. +.+...+..+..+|.+.|++++|...|++...
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3444443 234 34466667777788888888888888887764 44677788888888888888888888887652
Q ss_pred -CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 040371 105 -NDVSVWNAMISGVAIHGLAADASAIFTKMEMF 136 (410)
Q Consensus 105 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 136 (410)
.+...|..+..+|...|++++|+..|++..+.
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35667788888888888888888888887663
No 141
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.24 E-value=4.7e-05 Score=56.89 Aligned_cols=98 Identities=12% Similarity=0.070 Sum_probs=68.0
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 84 (410)
++..|..+...+...|++++|+..|++..... +.+...+..+..++...|+++.|...++...+.. +.+..++..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 34567777788888888888888888877642 3356667777777777777777777777777653 335666666666
Q ss_pred HHHhcCCHHHHHHHHHhccc
Q 040371 85 MYSKCGKIQMAKEVFDTVQR 104 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~ 104 (410)
+|.+.|++++|.+.|++..+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777666543
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.24 E-value=1.2e-05 Score=65.78 Aligned_cols=116 Identities=9% Similarity=-0.001 Sum_probs=79.9
Q ss_pred hhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHH-HHHcCCh--HHH
Q 040371 53 RLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISG-VAIHGLA--ADA 126 (410)
Q Consensus 53 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~-~~~~g~~--~~A 126 (410)
..|+++.|...+...++.. +.+..++..+...|...|++++|...|++..+ .+...|..+... |...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 4566777777777777664 44677788888888888888888888877652 355667777777 6677777 888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 040371 127 SAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS 170 (410)
Q Consensus 127 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 170 (410)
+..|++..... +.+...+..+...+...|++++|...|+.+.+
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 88888777642 22455666677777778888888888877764
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.23 E-value=3.1e-05 Score=60.16 Aligned_cols=96 Identities=6% Similarity=-0.030 Sum_probs=56.7
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 84 (410)
+...|..+...|...|++++|+..|++..... +.+...|..+..++...|+++.|...++..++.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 45566666666666666666666666665532 2244556666666666666666666666666553 234555555555
Q ss_pred HHHhcCCHHHHHHHHHhc
Q 040371 85 MYSKCGKIQMAKEVFDTV 102 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m 102 (410)
.|.+.|++++|...|++.
T Consensus 86 ~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 666666666665555544
No 144
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.22 E-value=1.4e-05 Score=59.40 Aligned_cols=97 Identities=14% Similarity=-0.009 Sum_probs=63.7
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCc--cHHHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIEL--NFILSAAL 82 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l 82 (410)
+...|..+...|.+.|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++.++.. +. +..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 45566777777777777777777777776542 3345566666667777777777777777766653 22 45566666
Q ss_pred HHHHHhc-CCHHHHHHHHHhcc
Q 040371 83 IDMYSKC-GKIQMAKEVFDTVQ 103 (410)
Q Consensus 83 i~~y~~~-g~~~~A~~~f~~m~ 103 (410)
...|.+. |++++|.+.|++..
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHHhCCHHHHHHHHHHHh
Confidence 6666666 66666666666554
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.21 E-value=2.7e-05 Score=59.81 Aligned_cols=92 Identities=5% Similarity=-0.091 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040371 77 ILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACS 153 (410)
Q Consensus 77 ~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 153 (410)
..+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..... +.+...+..+...+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 3344444444444444444444443321 123344444444444444444444444444321 112333444444444
Q ss_pred ccCCHHHHHHHHHHhh
Q 040371 154 HCGLVEEGRKYFDHMR 169 (410)
Q Consensus 154 ~~g~~~~a~~~~~~m~ 169 (410)
..|++++|...|+...
T Consensus 96 ~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 96 AMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 4444444444444443
No 146
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.20 E-value=0.0012 Score=60.06 Aligned_cols=180 Identities=6% Similarity=-0.036 Sum_probs=119.4
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 040371 9 WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLG-ALNHAYWVHNLIIEKKIELNFILSAALIDMYS 87 (410)
Q Consensus 9 ~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 87 (410)
|+.+-....+.+..++|++++.+++..+ +-+...|+.--.++...+ .++++.++++.+++.. +.+..+|+.-...+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 4444444455566678999999988753 224556777777777777 5889999999888775 457788887777777
Q ss_pred hc-C-CHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 040371 88 KC-G-KIQMAKEVFDTVQRN---DVSVWNAMISGVAIHGLAA--------DASAIFTKMEMFNVLPDSITFLGLLTACSH 154 (410)
Q Consensus 88 ~~-g-~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 154 (410)
+. + ++++++++++++.+. |-.+|+--.-.+.+.|.++ ++++.++++.+... -|...++.....+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVS 213 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHh
Confidence 76 6 788888888888754 4456666555555555555 77888887777532 255666666666666
Q ss_pred cCC-------HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC
Q 040371 155 CGL-------VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGH 193 (410)
Q Consensus 155 ~g~-------~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 193 (410)
.+. ++++.+.++.+... -+-|...|+-+-..+.+.|+
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred ccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 654 56666666666532 23345666666655555554
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.20 E-value=1.8e-05 Score=62.43 Aligned_cols=92 Identities=10% Similarity=-0.039 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHH
Q 040371 43 TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAI 119 (410)
Q Consensus 43 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~ 119 (410)
.+..+...+...|++++|...|+.+++.. +.+...|..+..+|.+.|++++|...|++... .+...|..+..+|..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 44555556666677777777776666654 34566666666677777777777777766542 244566666667777
Q ss_pred cCChHHHHHHHHHHHH
Q 040371 120 HGLAADASAIFTKMEM 135 (410)
Q Consensus 120 ~g~~~~A~~l~~~m~~ 135 (410)
.|++++|+..|++...
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777776655
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.19 E-value=4.1e-05 Score=70.10 Aligned_cols=127 Identities=11% Similarity=-0.036 Sum_probs=100.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhccc--C-C---------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 040371 75 NFILSAALIDMYSKCGKIQMAKEVFDTVQR--N-D---------------VSVWNAMISGVAIHGLAADASAIFTKMEMF 136 (410)
Q Consensus 75 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 136 (410)
+...+..+...|.+.|++++|...|++... | + ..+|+.+..+|.+.|++++|+..|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567788888899999999999999987652 3 2 478888889999999999999999988875
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHH-HHHHHhC
Q 040371 137 NVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEA-YGLITSM 204 (410)
Q Consensus 137 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m 204 (410)
. +.+...+..+..++...|++++|...|+...+. -+.+...+..+..++.+.|+.++| ...+++|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 235677888888999999999999999988753 123467788888888888988888 3455555
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.18 E-value=3.8e-05 Score=58.87 Aligned_cols=94 Identities=15% Similarity=0.063 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMY 86 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 86 (410)
..|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...++..++.. +.+...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345556666666666666666666665532 2244555555666666666666666666655543 23344555555555
Q ss_pred HhcCCHHHHHHHHHhc
Q 040371 87 SKCGKIQMAKEVFDTV 102 (410)
Q Consensus 87 ~~~g~~~~A~~~f~~m 102 (410)
.+.|++++|...|++.
T Consensus 83 ~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 83 IAVKEYASALETLDAA 98 (126)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHH
Confidence 5555555555555544
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.17 E-value=5.4e-05 Score=58.01 Aligned_cols=93 Identities=9% Similarity=-0.157 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHH
Q 040371 42 FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVA 118 (410)
Q Consensus 42 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~ 118 (410)
..|......+...|++++|...+...++.. +.+..++..+..+|.+.|++++|...|++..+ .+...|..+..+|.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345555666666677777777777666653 33566666666666666666666666665542 24456666666666
Q ss_pred HcCChHHHHHHHHHHHH
Q 040371 119 IHGLAADASAIFTKMEM 135 (410)
Q Consensus 119 ~~g~~~~A~~l~~~m~~ 135 (410)
..|++++|+..|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 66666666666666654
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.17 E-value=4.4e-05 Score=58.92 Aligned_cols=26 Identities=8% Similarity=-0.125 Sum_probs=13.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 040371 110 WNAMISGVAIHGLAADASAIFTKMEM 135 (410)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~l~~~m~~ 135 (410)
|..+...|...|++++|++.|++.+.
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444455555555555555555444
No 152
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=5.5e-05 Score=71.38 Aligned_cols=192 Identities=11% Similarity=-0.003 Sum_probs=138.4
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCC-C---------------HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcC-CCcc
Q 040371 13 IGGFVRNARFDEALRFFREMLSSKVEP-D---------------KFTFASVIYGCARLGALNHAYWVHNLIIEKK-IELN 75 (410)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~~~g~~p-d---------------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~ 75 (410)
...+.+.|++++|++.|.+..+..... + ...+..+...|...|++++|.+.+..+.+.- -.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 355778999999999999998743211 1 1247788999999999999999998876531 1112
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC--C--C
Q 040371 76 F----ILSAALIDMYSKCGKIQMAKEVFDTVQR-----ND----VSVWNAMISGVAIHGLAADASAIFTKMEMF--N--V 138 (410)
Q Consensus 76 ~----~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g--~ 138 (410)
. .+.+.+-..+...|+.+.|..+++.... .+ ..++..+...|...|++++|..++++.... + -
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 2344455556667899999999887642 11 347788899999999999999999988653 1 1
Q ss_pred CCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhc-CCC-C-C--hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 139 LPD-SITFLGLLTACSHCGLVEEGRKYFDHMRSRY-SIQ-P-Q--LEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 139 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~-~-~--~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
+|. ..++..+...|...|++++|..+++...... .+. | . ...+..+...+...|++++|...|.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 222 3467888899999999999999998876421 111 1 1 245677777788889999997776554
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=8.1e-05 Score=58.34 Aligned_cols=95 Identities=13% Similarity=0.053 Sum_probs=58.2
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPD----KFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSA 80 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 80 (410)
+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+..++...|++++|...++..++.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4556677777777777777777777776653 344 4455556666666666666666666665543 23455555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhc
Q 040371 81 ALIDMYSKCGKIQMAKEVFDTV 102 (410)
Q Consensus 81 ~li~~y~~~g~~~~A~~~f~~m 102 (410)
.+..+|.+.|++++|...|++.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 5555666666666666665554
No 154
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.15 E-value=3.7e-05 Score=58.75 Aligned_cols=95 Identities=14% Similarity=0.064 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCC--Ccc----HHHHH
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKI--ELN----FILSA 80 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~----~~~~~ 80 (410)
.+|..+...|...|++++|+..|++..... +.+...+..+..++...|+++.|...+..+.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456677777777777777777777776542 33555666666666677777777777666655421 111 44455
Q ss_pred HHHHHHHhcCCHHHHHHHHHhc
Q 040371 81 ALIDMYSKCGKIQMAKEVFDTV 102 (410)
Q Consensus 81 ~li~~y~~~g~~~~A~~~f~~m 102 (410)
.+...|.+.|++++|.+.|++.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHH
Confidence 5555555555555555555544
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.14 E-value=4.7e-05 Score=63.66 Aligned_cols=127 Identities=13% Similarity=0.034 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCC-c--------------cHHHHHHHHHHHHhcCCHHHHHHHHHhccc-
Q 040371 41 KFTFASVIYGCARLGALNHAYWVHNLIIEKKIE-L--------------NFILSAALIDMYSKCGKIQMAKEVFDTVQR- 104 (410)
Q Consensus 41 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~--------------~~~~~~~li~~y~~~g~~~~A~~~f~~m~~- 104 (410)
...+..+...+...|++++|...+...++.... + ...++..+..+|.+.|++++|...|++..+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344555555555566666666666655553211 0 025666666777777777777777766542
Q ss_pred --CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHH-HHHHHhh
Q 040371 105 --NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEGR-KYFDHMR 169 (410)
Q Consensus 105 --~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~-~~~~~m~ 169 (410)
.+..+|..+..+|...|++++|+..|++.... .| +...+..+...+...++.+++. ..|..+.
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666777777777777777777776653 23 3445555555555555555555 3344433
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.14 E-value=3.8e-05 Score=62.02 Aligned_cols=96 Identities=11% Similarity=-0.000 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM 85 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 85 (410)
...|..+...|.+.|++++|+..|++..+.. +-+...|..+..++...|++++|...+++.++.. +.+...+..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3456666666666666666666666666532 2245556666666666666666666666666553 3345555555556
Q ss_pred HHhcCCHHHHHHHHHhcc
Q 040371 86 YSKCGKIQMAKEVFDTVQ 103 (410)
Q Consensus 86 y~~~g~~~~A~~~f~~m~ 103 (410)
|.+.|++++|...|++..
T Consensus 89 ~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 666666666665555543
No 157
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.12 E-value=1.9e-05 Score=60.53 Aligned_cols=93 Identities=13% Similarity=-0.071 Sum_probs=48.8
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 040371 9 WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSK 88 (410)
Q Consensus 9 ~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 88 (410)
|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...+++.++.. +.+...+..+...|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3444455555566666666665555431 2244455555555555555555555555555543 2234455555555555
Q ss_pred cCCHHHHHHHHHhcc
Q 040371 89 CGKIQMAKEVFDTVQ 103 (410)
Q Consensus 89 ~g~~~~A~~~f~~m~ 103 (410)
.|++++|...|++..
T Consensus 98 ~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 98 EHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555555443
No 158
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.11 E-value=2.4e-05 Score=62.20 Aligned_cols=95 Identities=11% Similarity=0.003 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcC----CCc-cH
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFREMLSSKV-EPD----KFTFASVIYGCARLGALNHAYWVHNLIIEKK----IEL-NF 76 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~-~pd----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g----~~~-~~ 76 (410)
.+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|...++...+.. ..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4567777777788888888888777654210 011 1245555556666666666666665554321 000 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHh
Q 040371 77 ILSAALIDMYSKCGKIQMAKEVFDT 101 (410)
Q Consensus 77 ~~~~~li~~y~~~g~~~~A~~~f~~ 101 (410)
.++..+...|...|++++|...|++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~ 114 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLK 114 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3344444555555555555555443
No 159
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.11 E-value=0.0005 Score=62.58 Aligned_cols=215 Identities=12% Similarity=0.082 Sum_probs=152.7
Q ss_pred HhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHhcccC---ChhhHHHHHHHHHHc-C-ChHH
Q 040371 52 ARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCG-KIQMAKEVFDTVQRN---DVSVWNAMISGVAIH-G-LAAD 125 (410)
Q Consensus 52 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~-g-~~~~ 125 (410)
.+.+..++|.++.+.++..+ +-+..+|+.--..+...| .+++++++++.+... +..+|+.-...+.+. + ++++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 33445568999999999876 457788988888888888 599999999998753 566888877777776 7 8999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH--------HHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC----
Q 040371 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVE--------EGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGH---- 193 (410)
Q Consensus 126 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--------~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~---- 193 (410)
++++++++.+.. .-|...++.-.-...+.|..+ ++.++++.+.+. . .-|...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~-d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV-D-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhccccccc
Confidence 999999998753 236666665555555555555 889999988864 2 3367788888877877776
Q ss_pred ---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCch--------------------hHHHHHHHhhc---------cC
Q 040371 194 ---IEEAYGLITSM-TMEP-DVVVWRALLSACRTFKRL--------------------ELGEVAIVNIS---------RL 239 (410)
Q Consensus 194 ---~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~---------~~ 239 (410)
++++++.+++. ...| |...|+-+-..+...|.. ........++. +.
T Consensus 221 ~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 68888888776 4455 677887766666665553 12222222221 12
Q ss_pred CCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040371 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 270 (410)
.+.....|+++|...|+.++|.++++.+.++
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 3334566899999999999999999998654
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.07 E-value=0.00011 Score=56.81 Aligned_cols=95 Identities=9% Similarity=-0.145 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHH
Q 040371 40 DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISG 116 (410)
Q Consensus 40 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~ 116 (410)
+...+..+...+...|+++.|...+...++.. +.+..++..+..+|.+.|++++|...|++..+ .+...|..+...
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45566666666666666666666666666653 33455666666666666666666666665442 234556666666
Q ss_pred HHHcCChHHHHHHHHHHHH
Q 040371 117 VAIHGLAADASAIFTKMEM 135 (410)
Q Consensus 117 ~~~~g~~~~A~~l~~~m~~ 135 (410)
|...|++++|+..|++...
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 6666666666666665544
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.06 E-value=0.00024 Score=52.87 Aligned_cols=92 Identities=13% Similarity=0.031 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHH
Q 040371 43 TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAI 119 (410)
Q Consensus 43 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~ 119 (410)
.+..+...+...|+++.|...++...+.. +.+...+..+...|.+.|++++|...|++..+ .+...|..+...|..
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 44444555555555555555555555442 22444555555555555555555555554331 133344444455555
Q ss_pred cCChHHHHHHHHHHHH
Q 040371 120 HGLAADASAIFTKMEM 135 (410)
Q Consensus 120 ~g~~~~A~~l~~~m~~ 135 (410)
.|++++|.+.|++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 5555555555554443
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.06 E-value=0.00011 Score=59.33 Aligned_cols=92 Identities=13% Similarity=-0.011 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHH
Q 040371 43 TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAI 119 (410)
Q Consensus 43 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~ 119 (410)
.+..+...+...|++++|.+.|+..++.. +.+..++..+..+|.+.|++++|...|++..+ .+...|..+...|.+
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44444444455555555555555544442 22344444444444444444444444444331 123344444444444
Q ss_pred cCChHHHHHHHHHHHH
Q 040371 120 HGLAADASAIFTKMEM 135 (410)
Q Consensus 120 ~g~~~~A~~l~~~m~~ 135 (410)
.|++++|+..|++..+
T Consensus 92 ~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 4444444444444433
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.06 E-value=8e-05 Score=57.45 Aligned_cols=97 Identities=6% Similarity=0.028 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCC--Ccc----HHHH
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKI--ELN----FILS 79 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~----~~~~ 79 (410)
..+|..+-..|.+.|++++|++.|++.++.. +-+...|..+..++...|++++|.+.+++.++... .++ ..++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3578889999999999999999999998753 34677899999999999999999999999987521 111 3467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcc
Q 040371 80 AALIDMYSKCGKIQMAKEVFDTVQ 103 (410)
Q Consensus 80 ~~li~~y~~~g~~~~A~~~f~~m~ 103 (410)
..+...|.+.|++++|++.|++..
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888899999999999999998764
No 164
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.05 E-value=7e-05 Score=58.89 Aligned_cols=90 Identities=14% Similarity=0.085 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 040371 79 SAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHC 155 (410)
Q Consensus 79 ~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 155 (410)
+..+...+.+.|++++|...|++... .+...|..+..+|.+.|++++|+..|++..... +.+...+..+..++...
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 33344444445555555555544331 133444444444445555555555554444421 11233344444444445
Q ss_pred CCHHHHHHHHHHhh
Q 040371 156 GLVEEGRKYFDHMR 169 (410)
Q Consensus 156 g~~~~a~~~~~~m~ 169 (410)
|++++|...|+...
T Consensus 100 g~~~~A~~~~~~al 113 (142)
T 2xcb_A 100 GDLDGAESGFYSAR 113 (142)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555554444
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.04 E-value=7.2e-05 Score=57.06 Aligned_cols=93 Identities=10% Similarity=0.037 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccC---C-------hhhHH
Q 040371 42 FTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN---D-------VSVWN 111 (410)
Q Consensus 42 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~-------~~~~~ 111 (410)
..+..+...+...|+++.|...+....+.. +.+..++..+...|.+.|++++|...|++.... + ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345555566666666666666666666553 334556666666666666666666666654321 1 34555
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 040371 112 AMISGVAIHGLAADASAIFTKMEM 135 (410)
Q Consensus 112 ~li~~~~~~g~~~~A~~l~~~m~~ 135 (410)
.+...|...|++++|.+.|++...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 555555666666666666655554
No 166
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.04 E-value=0.00014 Score=64.06 Aligned_cols=171 Identities=9% Similarity=-0.042 Sum_probs=123.2
Q ss_pred hhHHHHH-------HHHHHHcCCHhHHHHHHHHHHHCCCCCCH----------------------HHHHHHHHHHHhhCC
Q 040371 6 VVSWNSM-------IGGFVRNARFDEALRFFREMLSSKVEPDK----------------------FTFASVIYGCARLGA 56 (410)
Q Consensus 6 ~~~~n~l-------i~~~~~~g~~~~a~~l~~~m~~~g~~pd~----------------------~t~~~ll~a~~~~~~ 56 (410)
...|+.+ ...+.+.++..+++..++.-.. +.|+. ........++...|+
T Consensus 40 ~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~ 117 (282)
T 4f3v_A 40 CDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGN 117 (282)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTC
T ss_pred hHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCC
Confidence 3567777 4666666666666666655433 33322 123345677789999
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCC-----hhhHHHHHHHHHHcCChHHHHHHHH
Q 040371 57 LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRND-----VSVWNAMISGVAIHGLAADASAIFT 131 (410)
Q Consensus 57 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~ 131 (410)
+++|.++++.+...+ |+......+...|.+.|++++|+..|+...... ...+..+-.++.+.|++++|+..|+
T Consensus 118 y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~ 195 (282)
T 4f3v_A 118 YADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLT 195 (282)
T ss_dssp HHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999887754 443377777789999999999999999776532 2367778889999999999999999
Q ss_pred HHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHH
Q 040371 132 KMEMFNVLPD--SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA 183 (410)
Q Consensus 132 ~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 183 (410)
+.......|. .........++.+.|+.++|..+|+++... .|+...+..
T Consensus 196 ~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~---~P~~~~~~a 246 (282)
T 4f3v_A 196 EANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT---HPEPKVAAA 246 (282)
T ss_dssp HHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---SCCHHHHHH
T ss_pred HHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcHHHHHH
Confidence 9875443254 234556677888999999999999999864 454333333
No 167
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.04 E-value=0.0018 Score=58.52 Aligned_cols=233 Identities=10% Similarity=0.032 Sum_probs=149.2
Q ss_pred HHHHHHHHH---HHcCCHh-HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhhCC----------HHHHHHHHHHHHHcCC
Q 040371 8 SWNSMIGGF---VRNARFD-EALRFFREMLSSKVEPD-KFTFASVIYGCARLGA----------LNHAYWVHNLIIEKKI 72 (410)
Q Consensus 8 ~~n~li~~~---~~~g~~~-~a~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~----------~~~a~~~~~~~~~~g~ 72 (410)
.|..+.... .+.|.+. +|++++..++.. .|+ ...|+.=-.++...+. ++++..+++.++...
T Consensus 28 ~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~- 104 (331)
T 3dss_A 28 LYQSATQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN- 104 (331)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-
Confidence 444444433 3556654 799999999874 454 4455553333333332 678888888888865
Q ss_pred CccHHHHHHHHHHHHhcCC--HHHHHHHHHhccc---CChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHH
Q 040371 73 ELNFILSAALIDMYSKCGK--IQMAKEVFDTVQR---NDVSVWNAMISGVAIHGL-AADASAIFTKMEMFNVLPDSITFL 146 (410)
Q Consensus 73 ~~~~~~~~~li~~y~~~g~--~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~ 146 (410)
+.+..+|+.-.-.+.+.|+ ++++..+++++.+ +|-.+|+--.-.....|. ++++++.++++.+..+ -|...++
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~ 183 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWH 183 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHH
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHH
Confidence 5588889888888888884 8999999998874 466788877777777887 5899999999988642 3556666
Q ss_pred HHHHHHHcc--------------CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhc-----------CCHHHHHHHH
Q 040371 147 GLLTACSHC--------------GLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRA-----------GHIEEAYGLI 201 (410)
Q Consensus 147 ~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~ 201 (410)
.....+.+. +.++++.+.+...... -+-|...|+-+--.+.+. +.++++++.+
T Consensus 184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~ 261 (331)
T 3dss_A 184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESC 261 (331)
T ss_dssp HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHH
Confidence 555544443 4577888888887743 234567777666666655 4567777777
Q ss_pred HhC-CCCCCHHHHHHHHH-----HHHhcCchhHHHHH---HHhhccCCCchHHHH
Q 040371 202 TSM-TMEPDVVVWRALLS-----ACRTFKRLELGEVA---IVNISRLMGGDYVLL 247 (410)
Q Consensus 202 ~~m-~~~p~~~~~~~li~-----~~~~~g~~~~a~~~---~~~~~~~~~~~~~~l 247 (410)
+++ ...||. .|..+-. +....+..++.... +.+++|....-|.-+
T Consensus 262 ~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 262 KELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp HHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 776 455654 3432111 11134444555444 455566554444443
No 168
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.02 E-value=1.5e-05 Score=66.78 Aligned_cols=121 Identities=9% Similarity=-0.085 Sum_probs=59.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC--------------HH
Q 040371 82 LIDMYSKCGKIQMAKEVFDTVQRN---DVSVWNAMISGVAIHGLAADASAIFTKMEMFNV-LPD--------------SI 143 (410)
Q Consensus 82 li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~--------------~~ 143 (410)
.+.+....|++++|.+.|+.-... ....|..+...+.+.|++++|+..|++...... .|+ ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 334444555666666555533321 334566666667777777777777777665311 110 14
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 144 TFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 144 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
.+..+..++...|++++|...++...+. -+.+...+..+..+|...|++++|.+.|++.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4555555556666666666666665532 1223455555555566666666666555554
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.01 E-value=5.6e-05 Score=55.93 Aligned_cols=92 Identities=8% Similarity=-0.050 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 040371 78 LSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP--DSITFLGLLTAC 152 (410)
Q Consensus 78 ~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~ 152 (410)
++..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.. +. +...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 334444445555555555555544331 233445555555555555555555555555432 11 244455555555
Q ss_pred Hcc-CCHHHHHHHHHHhhh
Q 040371 153 SHC-GLVEEGRKYFDHMRS 170 (410)
Q Consensus 153 ~~~-g~~~~a~~~~~~m~~ 170 (410)
... |++++|.+.+.....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 555 666666666655553
No 170
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.96 E-value=8.8e-05 Score=58.80 Aligned_cols=95 Identities=9% Similarity=0.027 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc---CCCC-Chh
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKMEMF----NVLP-DSITFLGLLTACSHCGLVEEGRKYFDHMRSRY---SIQP-QLE 179 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~~-~~~ 179 (410)
++..+...|...|++++|.+.|++.... +..+ ....+..+...+...|++++|...++...+.. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444444444445555555544443321 0000 02234444445555555555555555443210 1000 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHh
Q 040371 180 HYGAMVDLLGRAGHIEEAYGLITS 203 (410)
Q Consensus 180 ~~~~li~~~~~~g~~~~A~~~~~~ 203 (410)
.+..+...|...|++++|.+.+++
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHH
Confidence 344555555566666666555544
No 171
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.90 E-value=0.00015 Score=69.42 Aligned_cols=92 Identities=14% Similarity=0.031 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 040371 76 FILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTA 151 (410)
Q Consensus 76 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a 151 (410)
..+|..+..+|.+.|++++|+..|++..+ .+..+|..+..+|...|++++|+..|++..+. .| +...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 34555666666666666666666665442 24455666666666666666666666666553 33 33445555555
Q ss_pred HHccCCHHHHH-HHHHHhh
Q 040371 152 CSHCGLVEEGR-KYFDHMR 169 (410)
Q Consensus 152 ~~~~g~~~~a~-~~~~~m~ 169 (410)
+.+.++.+++. ..+..|.
T Consensus 395 ~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 55556555544 2344443
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=0.00024 Score=55.54 Aligned_cols=94 Identities=9% Similarity=-0.046 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHH
Q 040371 107 VSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD----SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG 182 (410)
Q Consensus 107 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 182 (410)
...|..+...+...|++++|++.|++..+. .|+ ...+..+...+...|++++|...++...+. .+.+...+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 103 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALY 103 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHH
Confidence 344444555555555555555555555442 233 344444445555555555555555554432 111344455
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC
Q 040371 183 AMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 183 ~li~~~~~~g~~~~A~~~~~~m 204 (410)
.+..+|...|++++|...|++.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555555555555544
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.85 E-value=5.2e-05 Score=72.96 Aligned_cols=121 Identities=12% Similarity=0.076 Sum_probs=95.0
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 040371 9 WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSK 88 (410)
Q Consensus 9 ~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 88 (410)
|..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|.+.+++.++.. +.+...+..+..+|.+
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4444556778899999999999998752 3357889999999999999999999999999874 4568889999999999
Q ss_pred cCCHHHHHHHHHhccc--C-ChhhHHHHHHH--HHHcCChHHHHHHHH
Q 040371 89 CGKIQMAKEVFDTVQR--N-DVSVWNAMISG--VAIHGLAADASAIFT 131 (410)
Q Consensus 89 ~g~~~~A~~~f~~m~~--~-~~~~~~~li~~--~~~~g~~~~A~~l~~ 131 (410)
.|++++|.+.|++..+ | +...|..+..+ +.+.|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999998753 3 45566666666 788899999999988
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.00046 Score=64.91 Aligned_cols=186 Identities=9% Similarity=-0.061 Sum_probs=132.5
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHcCCCcc----------------HHHHHHHHHHHHhcCCHHHHHHHHHhcccC-----
Q 040371 47 VIYGCARLGALNHAYWVHNLIIEKKIELN----------------FILSAALIDMYSKCGKIQMAKEVFDTVQRN----- 105 (410)
Q Consensus 47 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~----------------~~~~~~li~~y~~~g~~~~A~~~f~~m~~~----- 105 (410)
-...+.+.|++++|.+.+..+++...... ......|...|.+.|++++|.+.+......
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 34566788999999999999987532211 134678899999999999999999877531
Q ss_pred Ch----hhHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCC-
Q 040371 106 DV----SVWNAMISGVAIHGLAADASAIFTKMEM----FNVLPD-SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQ- 175 (410)
Q Consensus 106 ~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~- 175 (410)
+. ...+.+-..+...|+.++|.+++++... .+..+. ..++..+...+...|++++|..+++.......-.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 2334444444556899999999988754 233343 3567788899999999999999999876432211
Q ss_pred --C-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-----CC-CC-C--HHHHHHHHHHHHhcCchhHHHHH
Q 040371 176 --P-QLEHYGAMVDLLGRAGHIEEAYGLITSM-----TM-EP-D--VVVWRALLSACRTFKRLELGEVA 232 (410)
Q Consensus 176 --~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~-~p-~--~~~~~~li~~~~~~g~~~~a~~~ 232 (410)
+ ....+..++..|...|++++|..++++. .. .| . ...+..+...+...++++.|...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~ 238 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSY 238 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 1 1457888999999999999999988775 11 12 1 23455555667788899988877
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.84 E-value=0.00018 Score=54.86 Aligned_cols=91 Identities=14% Similarity=-0.009 Sum_probs=58.4
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc--C-ChhhHHHHHHHHHHc
Q 040371 44 FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR--N-DVSVWNAMISGVAIH 120 (410)
Q Consensus 44 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~ 120 (410)
+..+...+.+.|++++|...++..++.. +.+...+..+..+|.+.|++++|+..|++..+ | +...|..+...|.+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444555666777777777777776653 33566666666777777777777777766542 2 445666666666667
Q ss_pred CChHHHHHHHHHHHH
Q 040371 121 GLAADASAIFTKMEM 135 (410)
Q Consensus 121 g~~~~A~~l~~~m~~ 135 (410)
|++++|+..|++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777766654
No 176
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.82 E-value=0.0088 Score=57.55 Aligned_cols=175 Identities=6% Similarity=-0.096 Sum_probs=96.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCCh---------------------------
Q 040371 126 ASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL--------------------------- 178 (410)
Q Consensus 126 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~--------------------------- 178 (410)
+..+|+++... .+-+...+...+.-+...|+++.|..+|++.... +.+.
T Consensus 198 v~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~ 273 (493)
T 2uy1_A 198 MHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGE 273 (493)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCTHHHHHHHHHTC---
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchhHHHHHHHHHHHhhc
Confidence 44455555443 1223444555555555667777777777666532 1111
Q ss_pred -------------hHHHHHHHHHHhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHH-HhcCchhHHHHHH---HhhccC
Q 040371 179 -------------EHYGAMVDLLGRAGHIEEAYGLITSMTMEP--DVVVWRALLSAC-RTFKRLELGEVAI---VNISRL 239 (410)
Q Consensus 179 -------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~p--~~~~~~~li~~~-~~~g~~~~a~~~~---~~~~~~ 239 (410)
..|...++.+.+.+.++.|..+|++. ..| +...|......- ...++.+.|..++ .+..|.
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~ 352 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD 352 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence 22334444444567788888888887 223 334443222221 2233688888883 333455
Q ss_pred CCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHCC
Q 040371 240 MGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEG 318 (410)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g 318 (410)
++..+...++...+.|+.+.|+.+|++..+ ...-|.. ++.-...+|..+.+.+++++....++..+
T Consensus 353 ~~~~~~~yid~e~~~~~~~~aR~l~er~~k------~~~lw~~-------~~~fE~~~G~~~~~r~v~~~~~~~~~~~~ 418 (493)
T 2uy1_A 353 STLLKEEFFLFLLRIGDEENARALFKRLEK------TSRMWDS-------MIEYEFMVGSMELFRELVDQKMDAIKADA 418 (493)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSCC------BHHHHHH-------HHHHHHHHSCHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------HHHHHHH-------HHHHHHHCCCHHHHHHHHHHHHHHhcccc
Confidence 554555567777788899999988888621 0011211 11112346788888888887776666443
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.79 E-value=0.00039 Score=53.02 Aligned_cols=91 Identities=12% Similarity=-0.017 Sum_probs=51.5
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcc---HHHHHHHHH
Q 040371 11 SMIGGFVRNARFDEALRFFREMLSSKVEPDK---FTFASVIYGCARLGALNHAYWVHNLIIEKKIELN---FILSAALID 84 (410)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~---~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~ 84 (410)
.+...+.+.|++++|+..|++..+.. +.+. ..+..+..++...|++++|...++.+++.. +.+ ..++..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 34556666777777777777766532 1122 355555566666666666666666666543 112 344555555
Q ss_pred HHHhcCCHHHHHHHHHhcc
Q 040371 85 MYSKCGKIQMAKEVFDTVQ 103 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~ 103 (410)
+|.+.|++++|...|++..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555543
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.77 E-value=4.9e-05 Score=57.56 Aligned_cols=84 Identities=11% Similarity=0.044 Sum_probs=50.2
Q ss_pred cCCHhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 040371 19 NARFDEALRFFREMLSSKV--EPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAK 96 (410)
Q Consensus 19 ~g~~~~a~~l~~~m~~~g~--~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 96 (410)
.|++++|+..|++.++.+. +-+...+..+..++...|++++|...+++.++.. +.+..++..+..+|.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 5667777777777765421 2234456666666667777777777777766654 334566666666666667776666
Q ss_pred HHHHhcc
Q 040371 97 EVFDTVQ 103 (410)
Q Consensus 97 ~~f~~m~ 103 (410)
..|++..
T Consensus 82 ~~~~~al 88 (117)
T 3k9i_A 82 ELLLKII 88 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
No 179
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.71 E-value=0.00019 Score=68.96 Aligned_cols=63 Identities=8% Similarity=-0.089 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHhhhh
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKMEMF---NVLPD----SITFLGLLTACSHCGLVEEGRKYFDHMRSR 171 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 171 (410)
+++.|...|...|++++|+.++++..+- -..|| ..+...+-.++...+.+++|+.++..+.+.
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555444321 11122 122333444445556666666666666543
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.71 E-value=0.00051 Score=52.36 Aligned_cols=85 Identities=16% Similarity=0.025 Sum_probs=37.7
Q ss_pred HHHHHhcCCHHHHHHHHHhccc--CC-h---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHH
Q 040371 83 IDMYSKCGKIQMAKEVFDTVQR--ND-V---SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD----SITFLGLLTAC 152 (410)
Q Consensus 83 i~~y~~~g~~~~A~~~f~~m~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~ 152 (410)
...+.+.|++++|...|++..+ |+ . ..|..+...|.+.|++++|+..|++..... |+ ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHH
Confidence 3344445555555555544432 21 1 244444444445555555555555444421 21 23333444444
Q ss_pred HccCCHHHHHHHHHHhh
Q 040371 153 SHCGLVEEGRKYFDHMR 169 (410)
Q Consensus 153 ~~~g~~~~a~~~~~~m~ 169 (410)
...|++++|...|+.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 44455555555554444
No 181
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.71 E-value=5.2e-05 Score=56.34 Aligned_cols=97 Identities=10% Similarity=0.146 Sum_probs=67.0
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcc------HHH
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELN------FIL 78 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~------~~~ 78 (410)
+...|..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.+.++..++... .+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS-TAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS-STTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CccHHHHHHHH
Confidence 45677788888888888888888888877642 33566777777888888888888888888877532 22 445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcc
Q 040371 79 SAALIDMYSKCGKIQMAKEVFDTVQ 103 (410)
Q Consensus 79 ~~~li~~y~~~g~~~~A~~~f~~m~ 103 (410)
+..+..++...|+.+.|...|++++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 5556666666666666655555443
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.71 E-value=0.00059 Score=65.15 Aligned_cols=125 Identities=11% Similarity=0.026 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccc--C-C---------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 040371 76 FILSAALIDMYSKCGKIQMAKEVFDTVQR--N-D---------------VSVWNAMISGVAIHGLAADASAIFTKMEMFN 137 (410)
Q Consensus 76 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 137 (410)
...+..+...|.+.|++++|...|++..+ | + ...|+.+..+|.+.|++++|+..|++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 44566667777777777777777776542 2 2 3566666667777777777777777666542
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHH-HHHHhC
Q 040371 138 VLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP-QLEHYGAMVDLLGRAGHIEEAY-GLITSM 204 (410)
Q Consensus 138 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~-~~~~~m 204 (410)
+.+...+..+..++...|++++|...|+.+.+ +.| +...+..+..++.+.++.+++. .++++|
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22455566666666677777777777766653 223 3455666666666666666554 244444
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.71 E-value=0.00069 Score=54.30 Aligned_cols=60 Identities=13% Similarity=0.057 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040371 76 FILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEM 135 (410)
Q Consensus 76 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 135 (410)
..++..+..+|.+.|++++|...+++... .+...|..+..+|...|++++|+..|++...
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 34555666666666666666666665442 2445566666666666666666666666655
No 184
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.70 E-value=0.0076 Score=54.44 Aligned_cols=215 Identities=9% Similarity=-0.007 Sum_probs=146.6
Q ss_pred HhhCCH-HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC----------HHHHHHHHHhccc---CChhhHHHHHHHH
Q 040371 52 ARLGAL-NHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK----------IQMAKEVFDTVQR---NDVSVWNAMISGV 117 (410)
Q Consensus 52 ~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~----------~~~A~~~f~~m~~---~~~~~~~~li~~~ 117 (410)
.+.|.+ ++|..+.+.++..+ +-+..+|+.--......|. ++++..+++.+.. ++..+|+.-.-.+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345555 47899999998875 4456677755444444333 6788888888764 3667888877777
Q ss_pred HHcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhc---
Q 040371 118 AIHGL--AADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL-VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRA--- 191 (410)
Q Consensus 118 ~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~--- 191 (410)
.+.|+ +++++++++++.+.. +-|...++.-.-.+.+.|. ++++.+.++.+.+. . +-|...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-N-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-C-SCCHHHHHHHHHHHHHHSCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-C-CCCHHHHHHHHHHHHHhhhc
Confidence 77774 899999999999864 3367777777777777887 68999999999864 2 34667787766666655
Q ss_pred -----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CchhHHHHH---HHhhccCCCchH
Q 040371 192 -----------GHIEEAYGLITSM-TMEP-DVVVWRALLSACRTF-----------KRLELGEVA---IVNISRLMGGDY 244 (410)
Q Consensus 192 -----------g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~-----------g~~~~a~~~---~~~~~~~~~~~~ 244 (410)
+.++++++.+++. ...| |...|+-+-..+... +.++++.+. +.++.|++...+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 4578888888876 4455 677787554444433 345566665 667778775444
Q ss_pred HHHHH---HHHhcCChhHHHHHHHHHHhC
Q 040371 245 VLLSN---MYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 245 ~~l~~---~~~~~g~~~~a~~~~~~m~~~ 270 (410)
..++. .....|..+++...+.++.+-
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 33332 222456777888888887753
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.70 E-value=0.00014 Score=66.58 Aligned_cols=142 Identities=13% Similarity=0.076 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMY 86 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 86 (410)
..|..+-..|.+.|++++|+..|++.... .|+...+ ...++.+.+...+ ....++.+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-------~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMF-------QLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHH-------TCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhh-------hhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 45667777778888888888888887653 3443311 1112222221111 012566677777
Q ss_pred HhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHH-HHccCCHHHH
Q 040371 87 SKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDS-ITFLGLLTA-CSHCGLVEEG 161 (410)
Q Consensus 87 ~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a-~~~~g~~~~a 161 (410)
.+.|++++|...|++..+ .+..+|..+..+|...|++++|+..|++..+ +.|+. ..+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776542 2556677777777777777777777777654 23432 222222222 1234556666
Q ss_pred HHHHHHhh
Q 040371 162 RKYFDHMR 169 (410)
Q Consensus 162 ~~~~~~m~ 169 (410)
...|..|.
T Consensus 319 ~~~~~~~l 326 (338)
T 2if4_A 319 KEMYKGIF 326 (338)
T ss_dssp --------
T ss_pred HHHHHHhh
Confidence 66776665
No 186
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.69 E-value=0.0081 Score=57.80 Aligned_cols=46 Identities=15% Similarity=-0.085 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHc
Q 040371 24 EALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEK 70 (410)
Q Consensus 24 ~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 70 (410)
.+..+|++++.. .+.+...|...+.-+.+.|+++.|+.++++.++.
T Consensus 197 Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 197 RMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 345566665553 2334555555555566666666666666666665
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.68 E-value=0.00069 Score=54.28 Aligned_cols=98 Identities=15% Similarity=0.145 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHC-------CC---------CC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSS-------KV---------EP-DKFTFASVIYGCARLGALNHAYWVHNLII 68 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~-------g~---------~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 68 (410)
+..|...-..+.+.|++++|+..|.+.+.. .- .| +...|..+..++.+.|+++.|...+...+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456888899999999999999999998763 00 12 23578888999999999999999999999
Q ss_pred HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc
Q 040371 69 EKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR 104 (410)
Q Consensus 69 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~ 104 (410)
+.. +.+...+..+..+|...|++++|...|++...
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 975 55788999999999999999999999998764
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.68 E-value=0.00044 Score=64.05 Aligned_cols=134 Identities=11% Similarity=0.009 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 040371 8 SWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYS 87 (410)
Q Consensus 8 ~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 87 (410)
.|..+...|.+.|++++|+..|++.++. .|+.. .....+...+ . -+.+..++..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~~-------~-~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGAK-------L-QPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHGG-------G-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHHH-------H-HHHHHHHHHHHHHHHH
Confidence 4666777777777777777777776541 00000 0001111000 1 1224556667777777
Q ss_pred hcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHH
Q 040371 88 KCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLP-DSITFLGLLTACSHCGLVEEGRK 163 (410)
Q Consensus 88 ~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~ 163 (410)
+.|++++|+..+++..+ .+..+|..+..+|...|++++|++.|++..+. .| +...+..+...+...++.+++.+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776553 24556677777777777777777777776653 33 34455555555555665555543
No 189
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.67 E-value=0.00021 Score=68.66 Aligned_cols=115 Identities=7% Similarity=-0.053 Sum_probs=63.6
Q ss_pred HHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 040371 85 MYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEG 161 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 161 (410)
.|.+.|++++|.+.|++..+ .+..+|+.+..+|.+.|++++|++.|++..+.. +.+..++..+..++...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34455666666666665432 235566666666666666666666666666542 12345566666666677777777
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHH--HHhcCCHHHHHHHHH
Q 040371 162 RKYFDHMRSRYSIQPQLEHYGAMVDL--LGRAGHIEEAYGLIT 202 (410)
Q Consensus 162 ~~~~~~m~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 202 (410)
.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77776666431 1123344444444 666677777777766
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.67 E-value=0.00074 Score=53.84 Aligned_cols=60 Identities=17% Similarity=0.107 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 040371 8 SWNSMIGGFVRNARFDEALRFFREMLSSKVEPD-------------KFTFASVIYGCARLGALNHAYWVHNLIIE 69 (410)
Q Consensus 8 ~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd-------------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 69 (410)
.|...-..+.+.|++++|+..|++.++. .|+ ...|.....++.++|++++|...+++.++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3555566666777777777777776653 222 11444444555555555555555444444
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.64 E-value=0.00056 Score=63.33 Aligned_cols=118 Identities=7% Similarity=-0.041 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccc-------------------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 040371 78 LSAALIDMYSKCGKIQMAKEVFDTVQR-------------------NDVSVWNAMISGVAIHGLAADASAIFTKMEMFNV 138 (410)
Q Consensus 78 ~~~~li~~y~~~g~~~~A~~~f~~m~~-------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 138 (410)
.+..+...|.+.|++++|.+.|++..+ .+..+|+.+..+|.+.|++++|++.+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 355566667777777777776665442 134566677777777777777777777776532
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHH
Q 040371 139 LPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP-QLEHYGAMVDLLGRAGHIEEAYG 199 (410)
Q Consensus 139 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 199 (410)
+.+...+..+..++...|++++|...|+...+. .| +...+..+...+.+.++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 124556666667777777777777777776642 23 34555566666666666655543
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.63 E-value=8.8e-05 Score=56.12 Aligned_cols=82 Identities=16% Similarity=0.128 Sum_probs=36.5
Q ss_pred CChHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 040371 121 GLAADASAIFTKMEMFNV-LP-DSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAY 198 (410)
Q Consensus 121 g~~~~A~~l~~~m~~~g~-~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 198 (410)
|++++|+..|++..+.+. .| +...+..+...+...|++++|...|+...+. .+-+...+..+..+|.+.|++++|.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHHH
Confidence 445555555555544321 12 2233444445555555555555555555432 1112344445555555555555555
Q ss_pred HHHHhC
Q 040371 199 GLITSM 204 (410)
Q Consensus 199 ~~~~~m 204 (410)
..+++.
T Consensus 82 ~~~~~a 87 (117)
T 3k9i_A 82 ELLLKI 87 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.63 E-value=0.00037 Score=66.91 Aligned_cols=119 Identities=8% Similarity=-0.032 Sum_probs=82.1
Q ss_pred HHhcCCHHHHHHHHHhccc-------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-----C-CCCC-HHHHHH
Q 040371 86 YSKCGKIQMAKEVFDTVQR-------N----DVSVWNAMISGVAIHGLAADASAIFTKMEMF-----N-VLPD-SITFLG 147 (410)
Q Consensus 86 y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~-~~t~~~ 147 (410)
+...|++++|+.++++..+ + -..+++.|...|...|++++|+.++++.++- | -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3456777777777665431 1 1246777888888888888888887776542 2 1232 456888
Q ss_pred HHHHHHccCCHHHHHHHHHHhhh----hcCCC-CC-hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 148 LLTACSHCGLVEEGRKYFDHMRS----RYSIQ-PQ-LEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 148 ll~a~~~~g~~~~a~~~~~~m~~----~~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
|...|...|++++|+.++++..+ .+|-. |+ ..+.+.+-.++...+.+++|+.++.++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887653 22322 22 345566777788888899999888887
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.53 E-value=0.0011 Score=46.73 Aligned_cols=82 Identities=13% Similarity=0.193 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDM 85 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 85 (410)
...|..+...|.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+..++..+...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4566777777777777777777777776542 3345566667777777777777777777776653 3345555555555
Q ss_pred HHhc
Q 040371 86 YSKC 89 (410)
Q Consensus 86 y~~~ 89 (410)
+.+.
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.52 E-value=0.00088 Score=52.35 Aligned_cols=110 Identities=11% Similarity=-0.016 Sum_probs=73.6
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHHHH
Q 040371 20 ARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSK----CGKIQMA 95 (410)
Q Consensus 20 g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A 95 (410)
+++++|++.|++..+.| .|+.. +-..+...+.++.|.+.|++..+.| +......|..+|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45677778887777766 33333 5555556666777777777777765 55666777777776 6777777
Q ss_pred HHHHHhccc-CChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCC
Q 040371 96 KEVFDTVQR-NDVSVWNAMISGVAI----HGLAADASAIFTKMEMFN 137 (410)
Q Consensus 96 ~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 137 (410)
.+.|++..+ .+..++..|-..|.. .++.++|...|++..+.|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777776543 355666666666666 667777777777766655
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.40 E-value=0.00045 Score=63.16 Aligned_cols=92 Identities=8% Similarity=0.005 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHH
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ-LEHYGAMVDL 187 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~ 187 (410)
.|+.+..+|.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...|+...+ +.|+ ...+..+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~---l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK---YAPDDKAIRRELRAL 307 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHH
Confidence 56666666666777777777776666532 22455666666666777777777777766652 2332 3333333333
Q ss_pred -HHhcCCHHHHHHHHHhC
Q 040371 188 -LGRAGHIEEAYGLITSM 204 (410)
Q Consensus 188 -~~~~g~~~~A~~~~~~m 204 (410)
....+..+++.++|.+|
T Consensus 308 ~~~~~~~~~~a~~~~~~~ 325 (338)
T 2if4_A 308 AEQEKALYQKQKEMYKGI 325 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 22234455555555555
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00029 Score=52.14 Aligned_cols=92 Identities=8% Similarity=0.012 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCC-------hhHH
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ-------LEHY 181 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~ 181 (410)
.|..+...+...|++++|++.|++..... +.+...+..+..++...|++++|...|+...+ +.|+ ...+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHHHHHH
Confidence 44445555555555555555555555431 12344455555555556666666666655552 2232 2333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC
Q 040371 182 GAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 182 ~~li~~~~~~g~~~~A~~~~~~m 204 (410)
..+..++...|++++|...++++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHhHhhhHhHHHHh
Confidence 44444444445554444444433
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.34 E-value=0.0038 Score=49.69 Aligned_cols=60 Identities=13% Similarity=0.005 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCc------c-----HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 040371 42 FTFASVIYGCARLGALNHAYWVHNLIIEKKIEL------N-----FILSAALIDMYSKCGKIQMAKEVFDT 101 (410)
Q Consensus 42 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~------~-----~~~~~~li~~y~~~g~~~~A~~~f~~ 101 (410)
..+......+...|++++|...|++.++..... + ...|+.+..++.+.|++++|+..|++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~k 82 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK 82 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 345556666777788888888888777653220 1 12455555555555555555544443
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.34 E-value=0.0025 Score=47.58 Aligned_cols=78 Identities=9% Similarity=-0.042 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040371 24 EALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103 (410)
Q Consensus 24 ~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 103 (410)
+|++.|++..+.. +.+...+..+..++...|++++|...++..++.. +.+...+..+..+|.+.|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667777776642 3356677777888888888888888888887764 3456677778888888888888888877654
No 200
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.25 E-value=0.015 Score=56.98 Aligned_cols=112 Identities=8% Similarity=-0.023 Sum_probs=59.5
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-
Q 040371 22 FDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA----------LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCG- 90 (410)
Q Consensus 22 ~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g- 90 (410)
.++|++.+.++.... +-+...|+.--.++...++ ++++.+.++.+++.. +-+..+|+.-.-.+.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 345566666666532 1133345544444444444 566666666665553 335555555555555555
Q ss_pred -CHHHHHHHHHhccc---CChhhHHHHHHHHHHcC-ChHHHHHHHHHHHH
Q 040371 91 -KIQMAKEVFDTVQR---NDVSVWNAMISGVAIHG-LAADASAIFTKMEM 135 (410)
Q Consensus 91 -~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~ 135 (410)
+++++.+.++++.+ +|-.+|+--...+.+.| .++++++.++++.+
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~ 172 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 172 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 44666666665543 24445555555555555 55555555555554
No 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.23 E-value=0.026 Score=55.23 Aligned_cols=164 Identities=8% Similarity=-0.047 Sum_probs=92.1
Q ss_pred HHHHHHHHhccc--C-ChhhHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--C
Q 040371 93 QMAKEVFDTVQR--N-DVSVWNAMISGVAIHGL----------AADASAIFTKMEMFNVLPDSITFLGLLTACSHCG--L 157 (410)
Q Consensus 93 ~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g--~ 157 (410)
++|.+.++++.. | +..+|+.--..+...|+ ++++++.++++.+... -+..+|..-.-++.+.| +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccccc
Confidence 445555555442 2 33445544444444444 5666666666655321 14445555555555555 4
Q ss_pred HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------
Q 040371 158 VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAG-HIEEAYGLITSM-TMEP-DVVVWRALLSACRTF----------- 223 (410)
Q Consensus 158 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~----------- 223 (410)
++++.+.++.+.+. . +-+-..|+.-.-.+.+.| .++++++.++++ ...| |...|+..-..+...
T Consensus 125 ~~~el~~~~k~l~~-d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEA-D-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhh-c-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 56666666666643 1 223445555555555556 566666666665 3344 455565554444432
Q ss_pred ---CchhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhH
Q 040371 224 ---KRLELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDT 259 (410)
Q Consensus 224 ---g~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~ 259 (410)
+.++++.+. .....|.+..+|..+-..+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 345566655 566788898899988888888887544
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.03 E-value=0.012 Score=45.71 Aligned_cols=109 Identities=14% Similarity=-0.105 Sum_probs=84.5
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc-CChhhHHHHHHHHHH----cCChHHHHHH
Q 040371 55 GALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR-NDVSVWNAMISGVAI----HGLAADASAI 129 (410)
Q Consensus 55 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l 129 (410)
+++++|.+.|++..+.| .++.. |..+|...+.+++|.+.|++..+ .+..+++.+-..|.. .++.++|++.
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 46788999999998888 33333 77788888888889999987654 467788888888887 7889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhhhh
Q 040371 130 FTKMEMFNVLPDSITFLGLLTACSH----CGLVEEGRKYFDHMRSR 171 (410)
Q Consensus 130 ~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~ 171 (410)
|++..+.| +...+..|-..|.. .++.++|...|+...+.
T Consensus 84 ~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 84 YSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 98888765 45566667777777 78888888888887753
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.97 E-value=0.007 Score=45.00 Aligned_cols=75 Identities=12% Similarity=0.066 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040371 60 AYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEM 135 (410)
Q Consensus 60 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 135 (410)
+.+.++..++.. +.+...+..+...|.+.|++++|...|++... .+...|..+...|...|++++|...|++...
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555543 34566677777777777777777777766542 2445666666677777777777777766654
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.97 E-value=0.01 Score=41.51 Aligned_cols=58 Identities=17% Similarity=0.080 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 040371 43 TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDT 101 (410)
Q Consensus 43 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 101 (410)
.+..+...+...|++++|...++..++.. +.+..++..+...|.+.|++++|...|++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444444444555555555555444432 22334444444444444444444444443
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.96 E-value=0.0047 Score=44.90 Aligned_cols=65 Identities=17% Similarity=0.107 Sum_probs=48.7
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHc
Q 040371 5 DVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEK 70 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 70 (410)
+...|..+...|.+.|++++|+..|++..+.. +.+...|..+..++...|++++|.+.+++.++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45677888888888888888888888877643 334567777788888888888888888777654
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.93 E-value=0.0025 Score=50.63 Aligned_cols=106 Identities=14% Similarity=-0.003 Sum_probs=54.2
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 040371 18 RNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKE 97 (410)
Q Consensus 18 ~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 97 (410)
+.+++++|+..+++..+.. +-+...|..+..++...++++.+.... +.+++|+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al-------------------------~~~~eAi~ 67 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAK-------------------------QMIQEAIT 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHH-------------------------HHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhH-------------------------hHHHHHHH
Confidence 4455666666666665542 235555555555555555433111100 01334555
Q ss_pred HHHhccc--C-ChhhHHHHHHHHHHc-----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040371 98 VFDTVQR--N-DVSVWNAMISGVAIH-----------GLAADASAIFTKMEMFNVLPDSITFLGLLTA 151 (410)
Q Consensus 98 ~f~~m~~--~-~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 151 (410)
.|++..+ | +..+|+.+-.+|... |++++|++.|++..+ +.|+...|...+..
T Consensus 68 ~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 68 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 5544431 2 334455555555443 467777777777776 46666655554443
No 207
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.88 E-value=0.014 Score=59.70 Aligned_cols=101 Identities=14% Similarity=0.025 Sum_probs=48.8
Q ss_pred HccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----------CCCHHHHHHHHHHHHh
Q 040371 153 SHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM----------EPDVVVWRALLSACRT 222 (410)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~p~~~~~~~li~~~~~ 222 (410)
...|++++|.++.+.+. +...|..|..++.+.|+++.|.+.|.+++- .-+...+..+...+..
T Consensus 663 l~~~~~~~A~~~~~~~~-------~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDES-------AEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHTCHHHHHHHHTTCC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhhC-------cHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666655543321 345566666666666666666666655530 0112222233333444
Q ss_pred cCchhHHHHHHHhhccCCCchHHHHHHHHHhcCChhHHHHHHH
Q 040371 223 FKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVRE 265 (410)
Q Consensus 223 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 265 (410)
.|+++.|..++.+. .-+...+++|.+.++|++|..+-+
T Consensus 736 ~~~~~~A~~~~~~~-----g~~~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 736 TGKFNLAFNAYWIA-----GDIQGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp TTCHHHHHHHHHHH-----TCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCchHHHHHHHHHc-----CCHHHHHHHHHHcCChHHHHHHHH
Confidence 44444444443322 123344555666666666666543
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.87 E-value=0.0045 Score=44.98 Aligned_cols=60 Identities=13% Similarity=0.019 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 040371 75 NFILSAALIDMYSKCGKIQMAKEVFDTVQR--N-DVSVWNAMISGVAIHGLAADASAIFTKME 134 (410)
Q Consensus 75 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 134 (410)
+..++..+...|.+.|++++|...|++..+ | +...|..+..+|...|++++|++.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555555566666666666666655432 2 34455555555556666666666555544
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.76 E-value=0.058 Score=54.99 Aligned_cols=154 Identities=14% Similarity=0.114 Sum_probs=101.3
Q ss_pred HHHHcCCHhHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH
Q 040371 15 GFVRNARFDEALR-FFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQ 93 (410)
Q Consensus 15 ~~~~~g~~~~a~~-l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 93 (410)
.....+++++|.+ ++.. ++ +......++..+.+.|..+.|.++.+. +. .-.+....+|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHH
Confidence 3446788888877 4421 22 122337777888888998888876531 11 1134567899999
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC
Q 040371 94 MAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYS 173 (410)
Q Consensus 94 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 173 (410)
.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-+..... |
T Consensus 670 ~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~ 737 (814)
T 3mkq_A 670 LARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G 737 (814)
T ss_dssp HHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C
Confidence 9999987774 567999999999999999999999998743 334444555566666655554444322 2
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 174 IQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 174 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
-++....+|.+.|++++|.+++.++
T Consensus 738 ------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 ------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp ------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2344444566666666666666665
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.70 E-value=0.0047 Score=58.25 Aligned_cols=26 Identities=15% Similarity=0.026 Sum_probs=12.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhh
Q 040371 144 TFLGLLTACSHCGLVEEGRKYFDHMR 169 (410)
Q Consensus 144 t~~~ll~a~~~~g~~~~a~~~~~~m~ 169 (410)
+++.|...|...|++++|+.++++..
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34445555555555555555544433
No 211
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.69 E-value=0.0059 Score=48.52 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=31.4
Q ss_pred ChhHHHHHHHHHHHcCCHh----------HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhC
Q 040371 5 DVVSWNSMIGGFVRNARFD----------EALRFFREMLSSKVEP-DKFTFASVIYGCARLG 55 (410)
Q Consensus 5 ~~~~~n~li~~~~~~g~~~----------~a~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~ 55 (410)
+...|+.+-.++.+.++++ +|+..|++.++. .| +..+|..+..++...|
T Consensus 35 ~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 35 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHhc
Confidence 5667877777888877654 666666666653 33 3446666666665553
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.56 E-value=0.056 Score=49.18 Aligned_cols=139 Identities=9% Similarity=0.021 Sum_probs=85.4
Q ss_pred CCCCHHHHHHHHHHHHh--h---CCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHH----hcC----CH---HHHHHHH
Q 040371 37 VEPDKFTFASVIYGCAR--L---GALNHAYWVHNLIIEKKIELN-FILSAALIDMYS----KCG----KI---QMAKEVF 99 (410)
Q Consensus 37 ~~pd~~t~~~ll~a~~~--~---~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~----~~g----~~---~~A~~~f 99 (410)
.+.|...|...+.+... . .++.+|+.+|++.++.. |+ ...+..+.-+|. ..+ .. ..+.+..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 35566666666665542 2 23567778888887763 33 334433333332 111 11 1122211
Q ss_pred Hhcc--cCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCC
Q 040371 100 DTVQ--RNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ 177 (410)
Q Consensus 100 ~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~ 177 (410)
..+. ..+..+|.++...+...|++++|...+++....+ |+...|..+-..+.-.|+.++|.+.|+.... +.|.
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~ 342 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPG 342 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCS
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCC
Confidence 1121 3366677777777777799999999998888864 7777777777788888999999998888774 3666
Q ss_pred hhHHH
Q 040371 178 LEHYG 182 (410)
Q Consensus 178 ~~~~~ 182 (410)
..+|.
T Consensus 343 ~~t~~ 347 (372)
T 3ly7_A 343 ANTLY 347 (372)
T ss_dssp HHHHH
T ss_pred cChHH
Confidence 66554
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.53 E-value=0.011 Score=55.60 Aligned_cols=61 Identities=15% Similarity=0.071 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKMEMF-----N-VLPD-SITFLGLLTACSHCGLVEEGRKYFDHMR 169 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 169 (410)
+++.+...|...|++++|+.++++.+.- | -.|+ ..+++.|...|...|++++|+.++++..
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4555555555555555555555554331 1 1121 2345555555666666666665555544
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.50 E-value=0.016 Score=54.57 Aligned_cols=81 Identities=10% Similarity=-0.047 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHc-----C--CCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc----------CC-hhhHHHHHHH
Q 040371 55 GALNHAYWVHNLIIEK-----K--IELNFILSAALIDMYSKCGKIQMAKEVFDTVQR----------ND-VSVWNAMISG 116 (410)
Q Consensus 55 ~~~~~a~~~~~~~~~~-----g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----------~~-~~~~~~li~~ 116 (410)
|++++|..++++.++. | .+....+++.|...|...|++++|+.++++... |+ ..++|.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4556666666555442 1 111235566677777777777777776665541 12 2467777777
Q ss_pred HHHcCChHHHHHHHHHHHH
Q 040371 117 VAIHGLAADASAIFTKMEM 135 (410)
Q Consensus 117 ~~~~g~~~~A~~l~~~m~~ 135 (410)
|...|++++|+.+|++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 7777777777777776644
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.44 E-value=0.014 Score=54.90 Aligned_cols=26 Identities=8% Similarity=-0.207 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHH
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKME 134 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~ 134 (410)
+++.|...|...|++++|+.++++..
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45555555555555555555555543
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.35 E-value=0.08 Score=48.18 Aligned_cols=140 Identities=11% Similarity=0.019 Sum_probs=86.2
Q ss_pred CccHHHHHHHHHHHH--hcCC---HHHHHHHHHhccc--CC-hhhHHHHHHHHHH----cCCh-HHHH---HHHHHHHH-
Q 040371 73 ELNFILSAALIDMYS--KCGK---IQMAKEVFDTVQR--ND-VSVWNAMISGVAI----HGLA-ADAS---AIFTKMEM- 135 (410)
Q Consensus 73 ~~~~~~~~~li~~y~--~~g~---~~~A~~~f~~m~~--~~-~~~~~~li~~~~~----~g~~-~~A~---~l~~~m~~- 135 (410)
+.+...|...+.+.. ..++ +.+|+.+|++..+ |+ ...|..+.-+|.. .+.. .... ..++....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 455566666554433 3333 5788999988874 43 2344443333321 1111 1111 12221111
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH
Q 040371 136 FNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDVVVWR 214 (410)
Q Consensus 136 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~ 214 (410)
.....+..++..+...+...|++++|...++++..- + |+...|..+...+.-.|++++|.+.|++. .+.|...+|.
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-n--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-E--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 122446677777766667779999999999998864 3 77777888888889999999999888776 5667777654
Q ss_pred H
Q 040371 215 A 215 (410)
Q Consensus 215 ~ 215 (410)
.
T Consensus 348 ~ 348 (372)
T 3ly7_A 348 W 348 (372)
T ss_dssp H
T ss_pred H
Confidence 3
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.32 E-value=0.028 Score=40.18 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=39.3
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHcC
Q 040371 12 MIGGFVRNARFDEALRFFREMLSSKVEPDKF-TFASVIYGCARLGALNHAYWVHNLIIEKK 71 (410)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 71 (410)
....+.+.|++++|+..|++..+.. +.+.. .+..+..++...|++++|.+.+++.++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3445667777777777777776642 22445 66666777777777777777777777654
No 218
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.03 E-value=0.44 Score=38.30 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=66.1
Q ss_pred HHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 040371 85 MYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKY 164 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 164 (410)
...++|+++.|.++-+.+ .+...|..+.....+.|+++-|.+.|.+... |..+.-.|.-.|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345677777777776665 3566777777777777887777777776532 34445555556666665554
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 040371 165 FDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTME 207 (410)
Q Consensus 165 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 207 (410)
-+....+ | -++.....+...|+++++.+++.+.+.-
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~ 118 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSL 118 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCH
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCCh
Confidence 4443322 2 2444555566777777777777776543
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.86 E-value=0.02 Score=40.93 Aligned_cols=51 Identities=12% Similarity=0.024 Sum_probs=23.5
Q ss_pred HHHhcCCHHHHHHHHHhccc--C-Chh-hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040371 85 MYSKCGKIQMAKEVFDTVQR--N-DVS-VWNAMISGVAIHGLAADASAIFTKMEM 135 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~ 135 (410)
.|.+.|++++|.+.|++..+ | +.. .|..+...|...|++++|++.|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444444444444444331 1 233 444444445555555555555555444
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.85 E-value=0.24 Score=35.29 Aligned_cols=44 Identities=5% Similarity=-0.039 Sum_probs=19.9
Q ss_pred HHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040371 92 IQMAKEVFDTVQR---NDVSVWNAMISGVAIHGLAADASAIFTKMEM 135 (410)
Q Consensus 92 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 135 (410)
.++|..+|++... .++.++..+...+.+.|++++|+..|+++.+
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444444332 1333444444444455555555555555444
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.25 E-value=0.33 Score=38.03 Aligned_cols=79 Identities=9% Similarity=-0.080 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCCHHHHHH
Q 040371 23 DEALRFFREMLSSKVEPDKFTFASVIYGCARLG---ALNHAYWVHNLIIEKKIEL--NFILSAALIDMYSKCGKIQMAKE 97 (410)
Q Consensus 23 ~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~---~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~ 97 (410)
..+.+-|.+....| .++..+.-.+.-++.+.. ++++|..+++.+.+.. .| +....-.|.-+|.+.|++++|++
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34445555555444 355555555666666666 4556777777776654 12 23344444555566666666666
Q ss_pred HHHhcc
Q 040371 98 VFDTVQ 103 (410)
Q Consensus 98 ~f~~m~ 103 (410)
.|+.+.
T Consensus 93 y~~~lL 98 (152)
T 1pc2_A 93 YVRGLL 98 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.20 E-value=0.26 Score=35.04 Aligned_cols=64 Identities=8% Similarity=0.020 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHhcCc---hhHHHHH---HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 040371 209 DVVVWRALLSACRTFKR---LELGEVA---IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGV 272 (410)
Q Consensus 209 ~~~~~~~li~~~~~~g~---~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 272 (410)
|...+..+..++...++ .++|..+ ..+.+|.++.....+...+.+.|++++|...++++.+..-
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 45556666666544433 5666666 5667888888889999999999999999999999987643
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.17 E-value=0.56 Score=36.72 Aligned_cols=84 Identities=6% Similarity=-0.141 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC---CHHHHHHHHHhcccCC-----hhhHHHHHHHHHHcCChHHHH
Q 040371 56 ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCG---KIQMAKEVFDTVQRND-----VSVWNAMISGVAIHGLAADAS 127 (410)
Q Consensus 56 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~f~~m~~~~-----~~~~~~li~~~~~~g~~~~A~ 127 (410)
.+..+++-|....+.|. ++..+.-.+.-+++++. +++++..+|++..+.+ ...+-.+.-+|.+.|++++|.
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34556666666666653 67777777788888887 5668888888765433 335555666778888888888
Q ss_pred HHHHHHHHCCCCCCH
Q 040371 128 AIFTKMEMFNVLPDS 142 (410)
Q Consensus 128 ~l~~~m~~~g~~p~~ 142 (410)
+.++..++ +.|+.
T Consensus 92 ~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHh--cCCCC
Confidence 88888877 46643
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.03 E-value=0.56 Score=41.03 Aligned_cols=61 Identities=13% Similarity=0.200 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhc-----CCHHHHHHHHHhcc--cC--ChhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCC
Q 040371 78 LSAALIDMYSKC-----GKIQMAKEVFDTVQ--RN--DVSVWNAMISGVAIH-GLAADASAIFTKMEMFNV 138 (410)
Q Consensus 78 ~~~~li~~y~~~-----g~~~~A~~~f~~m~--~~--~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~ 138 (410)
.|..|...|.+. |+.++|++.|++.. .| +..++......+++. |+.+++.+.+++.+....
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 444444444442 45555555554433 22 234444444444442 455555555555554433
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.99 E-value=1.5 Score=33.39 Aligned_cols=85 Identities=12% Similarity=0.060 Sum_probs=58.5
Q ss_pred hcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 040371 88 KCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDH 167 (410)
Q Consensus 88 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 167 (410)
+||++......+-.+. .+....+..++.....|+-++-.+++.++.. +.+|+......+..||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4555555555554442 2334456667777888888888888888544 3567777788888888888888888888888
Q ss_pred hhhhcCCC
Q 040371 168 MRSRYSIQ 175 (410)
Q Consensus 168 m~~~~~~~ 175 (410)
.-++ |++
T Consensus 151 AC~k-G~k 157 (172)
T 1wy6_A 151 ACKK-GEK 157 (172)
T ss_dssp HHHT-TCH
T ss_pred HHHh-hhH
Confidence 8765 653
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.63 E-value=0.72 Score=40.36 Aligned_cols=95 Identities=13% Similarity=0.088 Sum_probs=67.4
Q ss_pred cCCHHHHHHHHHhccc--CC---hhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCC
Q 040371 89 CGKIQMAKEVFDTVQR--ND---VSVWNAMISGVAIH-----GLAADASAIFTKMEMFNVLPDSITFLGLLTACSH-CGL 157 (410)
Q Consensus 89 ~g~~~~A~~~f~~m~~--~~---~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~ 157 (410)
.+....|+..+++..+ |+ -..|..+...|.+. |+.++|.+.|++.++.+..-+..++......++. .|+
T Consensus 176 l~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 176 PDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 3445677777776653 33 45899999999994 9999999999999884321135666667777777 499
Q ss_pred HHHHHHHHHHhhhhcCCC--CChhHHHHH
Q 040371 158 VEEGRKYFDHMRSRYSIQ--PQLEHYGAM 184 (410)
Q Consensus 158 ~~~a~~~~~~m~~~~~~~--~~~~~~~~l 184 (410)
.+++.+.++..... ... |+....+.+
T Consensus 256 ~~~a~~~L~kAL~a-~p~~~P~~~lan~~ 283 (301)
T 3u64_A 256 RAGFDEALDRALAI-DPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHHC-CGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCCCCChhHHHHH
Confidence 99999999998853 444 555444443
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.51 E-value=1.9 Score=32.88 Aligned_cols=135 Identities=9% Similarity=-0.039 Sum_probs=78.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 040371 120 HGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYG 199 (410)
Q Consensus 120 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 199 (410)
.|..++..++..+..... +..-|+-++.-....-+-+-..+.++.+-+-+.+ ..+|++.....
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrVi~ 82 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVVE 82 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHHH
T ss_pred hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHHHH
Confidence 456666666666655432 2333444444444444445555555554432222 22344444444
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHh---hccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 040371 200 LITSMTMEPDVVVWRALLSACRTFKRLELGEVAIVN---ISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGVR 273 (410)
Q Consensus 200 ~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 273 (410)
-+-.++ .+..-+...+......|.-+.-.++... -.++++.....+.++|.+.|+..+|.+++++.-++|++
T Consensus 83 C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 83 CGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 444432 2333344556666677777777777443 34455677778889999999999999999999888874
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.18 E-value=0.75 Score=33.20 Aligned_cols=60 Identities=7% Similarity=-0.129 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHcC------CCccHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 040371 43 TFASVIYGCARLGALNHAYWVHNLIIEKK------IELNFILSAALIDMYSKCGKIQMAKEVFDTV 102 (410)
Q Consensus 43 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m 102 (410)
.+..+...+...++++.|...++.+++.- -.+...++..|..+|.+.|+++.|...+++.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 33444555555555555555555554421 1223445555555555555555555555544
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.79 E-value=1.1 Score=34.95 Aligned_cols=95 Identities=12% Similarity=0.230 Sum_probs=44.6
Q ss_pred CChhHHHHHHHHHHHcCCH------hHHHHHHHHHHHCCCCCCHH----HHHHHHHHH---HhhCCHHHHHHHHHHHHHc
Q 040371 4 KDVVSWNSMIGGFVRNARF------DEALRFFREMLSSKVEPDKF----TFASVIYGC---ARLGALNHAYWVHNLIIEK 70 (410)
Q Consensus 4 ~~~~~~n~li~~~~~~g~~------~~a~~l~~~m~~~g~~pd~~----t~~~ll~a~---~~~~~~~~a~~~~~~~~~~ 70 (410)
.|..+|=..+.-.-++|++ ++.+++|++.... ++|+.. .|.-+.--| ...++++.|+++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3555666666666666776 6666666666553 555421 111111111 1224555555555555443
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040371 71 KIELNFILSAALIDMYSKCGKIQMAKEVFD 100 (410)
Q Consensus 71 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 100 (410)
. +.=..+|-.....=.+.|++++|++++.
T Consensus 90 h-KkFAKiwi~~AqFEiRqgnl~kARkILg 118 (161)
T 4h7y_A 90 C-KKFAFVHISFAQFELSQGNVKKSKQLLQ 118 (161)
T ss_dssp C-TTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred h-HHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 1 1114444444444444444444444444
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.44 E-value=1.6 Score=31.36 Aligned_cols=66 Identities=11% Similarity=0.094 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcC
Q 040371 6 VVSWNSMIGGFVRNARFDEALRFFREMLSS------KVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKK 71 (410)
Q Consensus 6 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~------g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 71 (410)
..-+-.|...+.+.|++..|..-|+...+. .-.+....+..+..++.+.|+++.|...++.+.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 344567888999999999999999987653 113356788899999999999999999999999864
No 231
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.13 E-value=0.0002 Score=66.70 Aligned_cols=239 Identities=12% Similarity=0.144 Sum_probs=157.9
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMY 86 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 86 (410)
..|+.|-.++.+.++..+|++-|-+ . -|+..|..++.++.+.|.++.-...+....+. ..++.+-+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIk---A---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIK---A---DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCC---C---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHh---C---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHH
Confidence 4688899999999999999887733 1 25667899999999999999988888877665 34566778999999
Q ss_pred HhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC--------------------CCCCCHHHHH
Q 040371 87 SKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMF--------------------NVLPDSITFL 146 (410)
Q Consensus 87 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--------------------g~~p~~~t~~ 146 (410)
+|.|++.+-.+++. .||+.--..+.+-+...|.++.|.-+|..+-.. .-.-+..||-
T Consensus 127 Ak~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWK 203 (624)
T 3lvg_A 127 AKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWK 203 (624)
T ss_dssp HTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHH
T ss_pred HhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHH
Confidence 99998776543332 344444444555555555555555555443211 1123567888
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC
Q 040371 147 GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TM-EPDVVVWRALLSACRTFK 224 (410)
Q Consensus 147 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~~~~~~g 224 (410)
-+-.+|...+.+..|.-.--.+.- .......++..|-..|.++|-+.+++.- +. +....+|+-|--.|++..
T Consensus 204 eV~~ACvd~~EfrLAqicGLniIv------hadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY~ 277 (624)
T 3lvg_A 204 EVCFACVDGKEFRLAQMCGLHIVV------HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 277 (624)
T ss_dssp HHTHHHHHSCTTTTTTHHHHHHHC------CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSSC
T ss_pred HHHHHHhCchHHHHHHHhcchhcc------cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcC
Confidence 888899988887766654433332 1223345677788888888888888765 43 357788888887887775
Q ss_pred chhHHHHH---HHhhcc-------CCCchHHHHHHHHHhcCChhHHHH
Q 040371 225 RLELGEVA---IVNISR-------LMGGDYVLLSNMYCYLKRWDTAEN 262 (410)
Q Consensus 225 ~~~~a~~~---~~~~~~-------~~~~~~~~l~~~~~~~g~~~~a~~ 262 (410)
--..-+.+ ..++.- .....|.-++-.|.+-..|+.|..
T Consensus 278 PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 278 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 33333333 111111 123457778888888888887754
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.12 E-value=3.9 Score=32.80 Aligned_cols=129 Identities=14% Similarity=0.080 Sum_probs=80.6
Q ss_pred HHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHH
Q 040371 50 GCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAI 129 (410)
Q Consensus 50 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l 129 (410)
.....|+++.|.++-+.+ .+...|..|.+...+.|+++-|.+.|.+..+ +..+.-.|.-.|+.+....+
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHH
Confidence 345678888888876654 3677888888888889999999888888753 34455556667777666555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 040371 130 FTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT 205 (410)
Q Consensus 130 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 205 (410)
-+.....| -++.....+.-.|+++++.++|...-+ |.--+-.....|..+.|.++.+.++
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r----------~~eA~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS----------LPLAYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC----------HHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC----------hHHHHHHHHHcCcHHHHHHHHHHhC
Confidence 54444443 134444555667888888887765432 1111111122455666666666664
No 233
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=91.61 E-value=2.7 Score=29.96 Aligned_cols=87 Identities=14% Similarity=0.118 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040371 56 ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEM 135 (410)
Q Consensus 56 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 135 (410)
.-++|..|-+.+...+. ...+--.-+......|++++|..+.+.+..||++.|-++-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 56778888777777664 33344444556778999999999999999999999998765 467888888888878877
Q ss_pred CCCCCCHHHHHH
Q 040371 136 FNVLPDSITFLG 147 (410)
Q Consensus 136 ~g~~p~~~t~~~ 147 (410)
.| .|....|..
T Consensus 98 sg-~p~~q~Fa~ 108 (116)
T 2p58_C 98 SQ-DPRIQTFVN 108 (116)
T ss_dssp CC-CHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 66 455555543
No 234
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.83 E-value=2.5 Score=30.05 Aligned_cols=87 Identities=14% Similarity=0.069 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040371 56 ALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEM 135 (410)
Q Consensus 56 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 135 (410)
.-++|..|-+.+...+. ...+--.-+......|++++|..+.+.+..||++.|-++-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 56777778777777664 33343444556778999999999999999999999998765 467888888888878877
Q ss_pred CCCCCCHHHHHH
Q 040371 136 FNVLPDSITFLG 147 (410)
Q Consensus 136 ~g~~p~~~t~~~ 147 (410)
.| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 455555543
No 235
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.50 E-value=1.9 Score=30.84 Aligned_cols=63 Identities=11% Similarity=0.191 Sum_probs=50.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 040371 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186 (410)
Q Consensus 122 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 186 (410)
+.-+..+-++.+....+.|+.....+.|.||.+..++..|.++|+.++.+.|- ....|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence 45567777777777788999999999999999999999999999999876443 3456777664
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=89.76 E-value=0.00029 Score=65.69 Aligned_cols=177 Identities=14% Similarity=0.113 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 040371 76 FILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHC 155 (410)
Q Consensus 76 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 155 (410)
+.+|.-|..++.+.|++.+|+..|-+ ..|...|..+|.+..+.|.+++-+..+...++..- +...=+.|+-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhh
Confidence 45667777777777777776655532 34556666777777777777777666654443322 223334566777777
Q ss_pred CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-----------------------CCCCHHH
Q 040371 156 GLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMT-----------------------MEPDVVV 212 (410)
Q Consensus 156 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----------------------~~p~~~~ 212 (410)
+++.+-+++ --.|+......+.+-+...|.++.|.-+|..++ ...+..|
T Consensus 130 ~rL~elEef--------l~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 130 NRLAELEEF--------INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp CSSSTTTST--------TSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred CcHHHHHHH--------HcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 665442222 223455455556666666666666665555441 1246789
Q ss_pred HHHHHHHHHhcCchhHHHHHHHhhccCCCchHHHHHHHHHhcCChhHHHHHHH
Q 040371 213 WRALLSACRTFKRLELGEVAIVNISRLMGGDYVLLSNMYCYLKRWDTAENVRE 265 (410)
Q Consensus 213 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 265 (410)
|..+-.+|...+.+..|......+-. .+.-...|+.-|.+.|.+++-..+++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv-hadeL~elv~~YE~~G~f~ELIsLlE 253 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV-HADELEELINYYQDRGYFEELITMLE 253 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC-CSSCCSGGGSSSSTTCCCTTSTTTHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc-cHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999887222210 01122334555555555555555544
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.31 E-value=2.6 Score=38.82 Aligned_cols=60 Identities=12% Similarity=0.009 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040371 43 TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103 (410)
Q Consensus 43 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 103 (410)
+...++.++...|+.+.+......+.... +.+...+..||.+|.++|+..+|.+.|++..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455666677788888777777776653 4567778888888888888888888777654
No 238
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.78 E-value=8 Score=30.52 Aligned_cols=61 Identities=5% Similarity=-0.065 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHC-CCCCCH-------HHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 040371 9 WNSMIGGFVRNARFDEALRFFREMLSS-KVEPDK-------FTFASVIYGCARLGALNHAYWVHNLIIE 69 (410)
Q Consensus 9 ~n~li~~~~~~g~~~~a~~l~~~m~~~-g~~pd~-------~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 69 (410)
+-.-+..+...|.++.|.-+...+... +..|+. .++..+.+++...+++..|...|++.++
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 334466777788888888877765532 123331 2566677788888888888888888643
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=86.63 E-value=4.7 Score=30.26 Aligned_cols=23 Identities=9% Similarity=-0.138 Sum_probs=12.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 040371 113 MISGVAIHGLAADASAIFTKMEM 135 (410)
Q Consensus 113 li~~~~~~g~~~~A~~l~~~m~~ 135 (410)
+.-++.+.|++++|.+.++.+++
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 33445555555555555555554
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.62 E-value=16 Score=38.90 Aligned_cols=28 Identities=21% Similarity=0.108 Sum_probs=16.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 040371 75 NFILSAALIDMYSKCGKIQMAKEVFDTV 102 (410)
Q Consensus 75 ~~~~~~~li~~y~~~g~~~~A~~~f~~m 102 (410)
+....-.+..+|..+|++++|...|.+.
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3333334455666667777777777654
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.51 E-value=3.1 Score=38.25 Aligned_cols=64 Identities=9% Similarity=0.108 Sum_probs=40.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCHHH
Q 040371 147 GLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM--------TMEPDVVV 212 (410)
Q Consensus 147 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~~~ 212 (410)
.++.++...|+.+++...+..+... -+.+...|..+|.+|.++|+..+|++.|++. ++.|...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455666677777777666666543 1335556777777777777777776666554 66676554
No 242
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=86.21 E-value=8.9 Score=28.74 Aligned_cols=65 Identities=9% Similarity=-0.118 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHhhCCHHH---HHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040371 39 PDKFTFASVIYGCARLGALNH---AYWVHNLIIEKKIE-LNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103 (410)
Q Consensus 39 pd~~t~~~ll~a~~~~~~~~~---a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 103 (410)
|+..+--.+.-++.+..+... |..+++.+.+.+.+ ......-.|.-+|.|.|++++|++.++.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333334444444443333 55555555544311 122222333445555555555555555543
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.19 E-value=12 Score=37.44 Aligned_cols=124 Identities=14% Similarity=0.070 Sum_probs=74.5
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHhcccCChh--h--HHHHHHHHHHcC-ChHHHHHHHHHHHHC------CCCCCHH----
Q 040371 80 AALIDMYSKCGK-IQMAKEVFDTVQRNDVS--V--WNAMISGVAIHG-LAADASAIFTKMEMF------NVLPDSI---- 143 (410)
Q Consensus 80 ~~li~~y~~~g~-~~~A~~~f~~m~~~~~~--~--~~~li~~~~~~g-~~~~A~~l~~~m~~~------g~~p~~~---- 143 (410)
.+|+..+...|+ .+.|..+|+++...+.. . ..++|..+.+.+ +--+|.+++.+..+. ...+...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445555555666 57788888887654332 1 122333222222 233455555544321 1222111
Q ss_pred --HH-HHH----HHHHHccCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 040371 144 --TF-LGL----LTACSHCGLVEEGRKYFDHMRSRYSIQPQ-LEHYGAMVDLLGRAGHIEEAYGLITSMTM 206 (410)
Q Consensus 144 --t~-~~l----l~a~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 206 (410)
.+ ..| ..-|...|+++.|+.+-++... ..|+ -.+|..|...|...|+++.|+-.++.+|+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 01 112 2335568999999999988874 3454 67999999999999999999999988863
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.16 E-value=15 Score=39.09 Aligned_cols=186 Identities=8% Similarity=-0.015 Sum_probs=113.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-------------------
Q 040371 81 ALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPD------------------- 141 (410)
Q Consensus 81 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~------------------- 141 (410)
.++..+.+.|..+-|+++..-.+. +..+--.+..+|...|++++|.+.|.+... |+.++
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~ 894 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHH 894 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTS
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccc
Confidence 455566677777777776554443 444334566778889999999999977521 21110
Q ss_pred ----HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHH
Q 040371 142 ----SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQ---LEHYGAMVDLLGRAGHIEEAYGLITSMTM-EPDVVVW 213 (410)
Q Consensus 142 ----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p~~~~~ 213 (410)
..-|..++..+.+.+.++.+.++-....+..+-.++ ...|..+.+.+...|++++|...+-.++- .--....
T Consensus 895 ~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cL 974 (1139)
T 4fhn_B 895 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCL 974 (1139)
T ss_dssp CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHH
T ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHH
Confidence 123667778888888888888877666543221111 22688889999999999999888877631 1123455
Q ss_pred HHHHHHHHhcCchhHHHHH------------HH----hh-ccCCCchHH-HHHHHHHhcCChhHHHHH-HHHHH
Q 040371 214 RALLSACRTFKRLELGEVA------------IV----NI-SRLMGGDYV-LLSNMYCYLKRWDTAENV-REIMK 268 (410)
Q Consensus 214 ~~li~~~~~~g~~~~a~~~------------~~----~~-~~~~~~~~~-~l~~~~~~~g~~~~a~~~-~~~m~ 268 (410)
..|+...+..|..+.-..+ +. .. .+.+...|. .|=.-+...|++..|..+ ++...
T Consensus 975 r~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 975 LDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 6677666666665444333 11 11 223333344 444445677777777664 45443
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.73 E-value=5.5 Score=28.51 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=35.1
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHc
Q 040371 21 RFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEK 70 (410)
Q Consensus 21 ~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 70 (410)
+.-+...-++.+....+.|++....+.|.||-+.+++..|.++++-+...
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455555666666667778888888888888888888888877776543
No 246
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.71 E-value=4.9 Score=30.44 Aligned_cols=63 Identities=13% Similarity=0.245 Sum_probs=50.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 040371 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVD 186 (410)
Q Consensus 122 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 186 (410)
+..+..+-++.+....+-|+.....+.|.+|.+.+++..|.++|+.++.+.| +....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 4445666677777778999999999999999999999999999999987543 34556777664
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.69 E-value=9.5 Score=38.26 Aligned_cols=124 Identities=10% Similarity=-0.018 Sum_probs=83.0
Q ss_pred HHHHHHHHHhhCC-HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH-HHHHHHHHhc-----------ccCChhh-
Q 040371 44 FASVIYGCARLGA-LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKI-QMAKEVFDTV-----------QRNDVSV- 109 (410)
Q Consensus 44 ~~~ll~a~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~f~~m-----------~~~~~~~- 109 (410)
-.+++..+...++ .+.|..+++.+.+.....+.....+++.+..+.++- -+|.++..+. +..+...
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3556666666666 588999999998875433444555666666555532 2344444332 2233211
Q ss_pred ----H-HHHH----HHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 040371 110 ----W-NAMI----SGVAIHGLAADASAIFTKMEMFNVLPD-SITFLGLLTACSHCGLVEEGRKYFDHMR 169 (410)
Q Consensus 110 ----~-~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 169 (410)
+ ..|+ .-+...|+++-|+++-++... ..|+ -.||..|..+|.+.|+++.|+-.++.+.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1 1122 335568999999999999877 4565 5789999999999999999999999874
No 248
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=83.99 E-value=8.3 Score=29.98 Aligned_cols=35 Identities=11% Similarity=0.044 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHhhCCH------HHHHHHHHHHHHcCCCcc
Q 040371 40 DKFTFASVIYGCARLGAL------NHAYWVHNLIIEKKIELN 75 (410)
Q Consensus 40 d~~t~~~ll~a~~~~~~~------~~a~~~~~~~~~~g~~~~ 75 (410)
|..+|-..+...-+.|+. +..+++|++.... ++|+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~ 52 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPD 52 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGG
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCcc
Confidence 555666666666666766 6777777777664 3443
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.92 E-value=30 Score=32.21 Aligned_cols=185 Identities=12% Similarity=0.081 Sum_probs=120.5
Q ss_pred CCHhHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHH-cCCCccHH--HHHHHHHHHHhcCC
Q 040371 20 ARFDEALRFFREMLS-----SKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIE-KKIELNFI--LSAALIDMYSKCGK 91 (410)
Q Consensus 20 g~~~~a~~l~~~m~~-----~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~g~~~~~~--~~~~li~~y~~~g~ 91 (410)
|++++|++-+..+.+ ............++..|...++++...+.+..+.+ +|..+... ..+.+++.......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 678888887766653 23444567788899999999999998777766654 34333222 22333444444443
Q ss_pred HHH--HHHHHHhccc---C-------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHc
Q 040371 92 IQM--AKEVFDTVQR---N-------DVSVWNAMISGVAIHGLAADASAIFTKMEMF--NVLPD---SITFLGLLTACSH 154 (410)
Q Consensus 92 ~~~--A~~~f~~m~~---~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~---~~t~~~ll~a~~~ 154 (410)
.+. -..+.+.... . .......|...|...|++.+|.+++.++... |..+. ...+..-+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 332 2233333221 1 1123456778899999999999999998754 22221 2356667888999
Q ss_pred cCCHHHHHHHHHHhhhhc-CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 155 CGLVEEGRKYFDHMRSRY-SIQPQ----LEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 155 ~g~~~~a~~~~~~m~~~~-~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
.+++..|..++..+..+. ...++ ...|..++..+...+++.+|...|.+.
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999875321 12222 245778888899999999998777665
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.86 E-value=10 Score=29.87 Aligned_cols=110 Identities=5% Similarity=-0.007 Sum_probs=52.3
Q ss_pred HHHHHhcCCHHHHHHHHHhcc-----cCCh-------hhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHH-HHHHH
Q 040371 83 IDMYSKCGKIQMAKEVFDTVQ-----RNDV-------SVWNAMISGVAIHGLAADASAIFTKMEMF-NVLPDSI-TFLGL 148 (410)
Q Consensus 83 i~~y~~~g~~~~A~~~f~~m~-----~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~-t~~~l 148 (410)
+......|.++.|+-+.+-+. ++++ .+...+.+++...|++..|...|++.+.. ..-|... +..++
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 555666777777766655432 2332 13444556666677777777777665332 1111111 11111
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 040371 149 LTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTM 206 (410)
Q Consensus 149 l~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 206 (410)
-. ...... .....++.+.---+-.+|.+.+++++|+.+++.+|.
T Consensus 107 ~~----~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 107 GN----SASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cc----cCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 00 000000 001122334444566677777888888887777753
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=78.60 E-value=40 Score=30.84 Aligned_cols=161 Identities=11% Similarity=-0.026 Sum_probs=87.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHc-CCC---ccHHHHHHHHHHHHhcCC-HHHHHHHHHhccc---CChhhH-----
Q 040371 44 FASVIYGCARLGALNHAYWVHNLIIEK-KIE---LNFILSAALIDMYSKCGK-IQMAKEVFDTVQR---NDVSVW----- 110 (410)
Q Consensus 44 ~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~---~~~~~~~~li~~y~~~g~-~~~A~~~f~~m~~---~~~~~~----- 110 (410)
...+...+.+.|+.++..+++...... +.- -...+...|++.+....+ .+.-.++..+..+ ..-.+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666665555555443221 001 123344566666655432 3333333322221 111222
Q ss_pred -HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHccCCHHHHHHHHHHhhhhc-CCCCChhHHH-
Q 040371 111 -NAMISGVAIHGLAADASAIFTKMEMFNVLPDS-----ITFLGLLTACSHCGLVEEGRKYFDHMRSRY-SIQPQLEHYG- 182 (410)
Q Consensus 111 -~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~- 182 (410)
.-++..|...|++.+|.+++.++.+.=-+.|. ..+..-+..|...+++.++..++.....-. .+.+++..-.
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 24678888999999999999888774222222 235556677888999999999998875421 2223333221
Q ss_pred ---HHHHHHH-hcCCHHHHHHHHHhC
Q 040371 183 ---AMVDLLG-RAGHIEEAYGLITSM 204 (410)
Q Consensus 183 ---~li~~~~-~~g~~~~A~~~~~~m 204 (410)
+-..++. ..+++.+|...|-+.
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 2222355 688899887665443
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.89 E-value=38 Score=30.17 Aligned_cols=23 Identities=4% Similarity=0.192 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHH
Q 040371 8 SWNSMIGGFVRNARFDEALRFFR 30 (410)
Q Consensus 8 ~~n~li~~~~~~g~~~~a~~l~~ 30 (410)
+|-++..-|.+++++++|++++.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~ 59 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILA 59 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHH
Confidence 46677777777777777777543
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.12 E-value=14 Score=28.01 Aligned_cols=59 Identities=8% Similarity=0.059 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHH
Q 040371 57 LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQR---NDVSVWNAMIS 115 (410)
Q Consensus 57 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~ 115 (410)
.=+.++-++.+....+-|++.+..+.+.++-+.+++..|.++|+.++. +....|.-++.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 334455555566666677777777777777777777777777776652 22334555543
No 254
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=74.96 E-value=44 Score=29.44 Aligned_cols=68 Identities=13% Similarity=0.074 Sum_probs=39.9
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCC--------HHHHHHHHHhcc---cCChhhHHHHHHHHHHcCChHHHHHHH
Q 040371 63 VHNLIIEKKIELNFILSAALIDMYSKCGK--------IQMAKEVFDTVQ---RNDVSVWNAMISGVAIHGLAADASAIF 130 (410)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~--------~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 130 (410)
+.+...+.+.+++.....-|++.+..... +++|.+.-.+.. .-|...+..+...|.+.|++.+|...|
T Consensus 79 lvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 79 LLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 44555556777777777777777666432 122333222221 125566777777777777777777765
No 255
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=73.15 E-value=89 Score=32.21 Aligned_cols=111 Identities=14% Similarity=0.040 Sum_probs=48.4
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHH--HHHHHHHhcCCHHH
Q 040371 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYG--AMVDLLGRAGHIEE 196 (410)
Q Consensus 119 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~--~li~~~~~~g~~~~ 196 (410)
-.|+.+....++..+.+.. .-+..-+..+.-++...|+.+.+..+.+.+... -.|....-. ++.-+|+-.|+...
T Consensus 502 GTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~a 578 (963)
T 4ady_A 502 GTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSA 578 (963)
T ss_dssp TCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHH
T ss_pred ccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHH
Confidence 3455555555555554421 111111222223334566666666666666532 112221111 22334555666655
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHH--HHhcCchhHHHHH
Q 040371 197 AYGLITSMTMEPDVVVWRALLSA--CRTFKRLELGEVA 232 (410)
Q Consensus 197 A~~~~~~m~~~p~~~~~~~li~~--~~~~g~~~~a~~~ 232 (410)
..++++.+.-.++..+-...+-+ ....|+.+.+.++
T Consensus 579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 55566665322333222222222 2334555554444
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.42 E-value=23 Score=32.83 Aligned_cols=57 Identities=9% Similarity=0.021 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccC------ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 040371 78 LSAALIDMYSKCGKIQMAKEVFDTVQRN------DVSVWNAMISGVAIHGLAADASAIFTKME 134 (410)
Q Consensus 78 ~~~~li~~y~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 134 (410)
+...+.+.|.++|+++.|.+.|.++... -+..|-..|..+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3445666666666666666666665521 12345555666666666666666666553
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.57 E-value=73 Score=29.39 Aligned_cols=96 Identities=11% Similarity=-0.049 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHH---
Q 040371 109 VWNAMISGVAIHGLAADASAIFTKMEMFNVLPD--SITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGA--- 183 (410)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~--- 183 (410)
++..+...|.+.|+.++|.+.|.++...-..+. ...+..++..+...+++..+......+.....-.++....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 677889999999999999999999987633333 356778889999999999999999987653333334332221
Q ss_pred -HHHHHHhcCCHHHHHHHHHhC
Q 040371 184 -MVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 184 -li~~~~~~g~~~~A~~~~~~m 204 (410)
-...+...+++.+|-..|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 122234568899887777665
No 258
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=63.03 E-value=83 Score=27.97 Aligned_cols=167 Identities=13% Similarity=0.088 Sum_probs=100.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHHc
Q 040371 79 SAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIF----TKMEMFNVLPDSITFLGLLTACSH 154 (410)
Q Consensus 79 ~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~a~~~ 154 (410)
+.++..=|.+.+++++|.+++-.- ...+.++|+...|-++- +-..+.++++|..+..-++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 445566688889999988876442 23345566665555544 444556778887777777776665
Q ss_pred cCCHHH-HHHHHHHhh---hhcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhH
Q 040371 155 CGLVEE-GRKYFDHMR---SRYS--IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKRLEL 228 (410)
Q Consensus 155 ~g~~~~-a~~~~~~m~---~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~ 228 (410)
...-+- =..+.+.+. .++| -.-++.....+...|.+.+++.+|+.-|- .+-.+....+..++-.+...+...+
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCcc
Confidence 443111 111222221 1123 22356777888899999999999988874 3444444677666666554443222
Q ss_pred HHHHHHhhccCCCchHHH-HHHHHHhcCChhHHHHHHHHHHh
Q 040371 229 GEVAIVNISRLMGGDYVL-LSNMYCYLKRWDTAENVREIMKK 269 (410)
Q Consensus 229 a~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~ 269 (410)
+ ..|.+ .+--|.-.++...|..+++...+
T Consensus 186 ~------------dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 A------------PLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp H------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred H------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2 22322 34456778899999988776654
No 259
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=62.60 E-value=67 Score=26.79 Aligned_cols=206 Identities=12% Similarity=0.033 Sum_probs=102.1
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHH--HHHHHHH
Q 040371 10 NSMIGGFVRNARFDEALRFFREMLSSKVEPDKF---TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFI--LSAALID 84 (410)
Q Consensus 10 n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~---t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~ 84 (410)
++.+...++.|+.+....++ +.|..++.. .-.+.+...+..|+.+-. +.+++.|..++.. ...+.+.
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~ 77 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIV----ELLLRHGADPVLRKKNGATPFL 77 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCHHH
T ss_pred chHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCCcccCCCCCCHHH
Confidence 34555667788876554444 455444322 112345555666776544 4455566554321 1223445
Q ss_pred HHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH------------HHHHH
Q 040371 85 MYSKCGKIQMAKEVFDTVQRN---DVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSIT------------FLGLL 149 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t------------~~~ll 149 (410)
..++.|+.+-+..+++.-... |...++.+.. .+..|+.+ +++.+.+.|..++... -.+.+
T Consensus 78 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L 152 (285)
T 1wdy_A 78 LAAIAGSVKLLKLFLSKGADVNECDFYGFTAFME-AAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHH-HHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHH-HHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHH
Confidence 556788888887777754332 3333444433 34566654 4444455555554220 11234
Q ss_pred HHHHccCCHHHHHHHHHHhhhhcCCCC---ChhHHHHHHHHHHhcCCH---HHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 040371 150 TACSHCGLVEEGRKYFDHMRSRYSIQP---QLEHYGAMVDLLGRAGHI---EEAYGLITSMTMEPD---VVVWRALLSAC 220 (410)
Q Consensus 150 ~a~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~p~---~~~~~~li~~~ 220 (410)
...+..|..+-...+++.. |..+ +....+.+..+ +..|.. .+..+++-+-+..++ ..-. +.+...
T Consensus 153 ~~A~~~~~~~~v~~Ll~~~----~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~-t~L~~A 226 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDEM----GADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGK-TPLILA 226 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTS----CCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSC-CHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhc----CCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCC-cHHHHH
Confidence 4445677777666666542 3222 22223333333 334442 444444444443332 2222 233444
Q ss_pred HhcCchhHHHHHHH
Q 040371 221 RTFKRLELGEVAIV 234 (410)
Q Consensus 221 ~~~g~~~~a~~~~~ 234 (410)
+..|+.+....++.
T Consensus 227 ~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 227 VEKKHLGLVQRLLE 240 (285)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 56777777666654
No 260
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=61.50 E-value=43 Score=27.34 Aligned_cols=84 Identities=7% Similarity=-0.007 Sum_probs=37.4
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHH--HHHHHHHHHHhcC
Q 040371 15 GFVRNARFDEALRFFREMLSSKVEPDKFT--FASVIYGCARLGALNHAYWVHNLIIEKKIELNFI--LSAALIDMYSKCG 90 (410)
Q Consensus 15 ~~~~~g~~~~a~~l~~~m~~~g~~pd~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g 90 (410)
..++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+- .+.+++.|..++.. ...+.+...++.|
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 90 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLACEHR 90 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence 34456777766666665555554443211 1122333344555543 33334444433211 1112233334555
Q ss_pred CHHHHHHHHHhc
Q 040371 91 KIQMAKEVFDTV 102 (410)
Q Consensus 91 ~~~~A~~~f~~m 102 (410)
+.+-+..+++..
T Consensus 91 ~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 91 SPTCLRALLDSA 102 (241)
T ss_dssp CHHHHHHHHHHS
T ss_pred CHHHHHHHHHcC
Confidence 655555555543
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=61.38 E-value=50 Score=24.89 Aligned_cols=66 Identities=15% Similarity=-0.034 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040371 38 EPDKFTFASVIYGCARLGA---LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103 (410)
Q Consensus 38 ~pd~~t~~~ll~a~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 103 (410)
.|+..|--...-++.+..+ ...|..+++.+.+.+........--|.-++.|.|++++|++..+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444443334444444443 34566666666665422233444445556666666666666666554
No 262
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=61.33 E-value=32 Score=25.76 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCC---hhhHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCC
Q 040371 79 SAALIDMYSKCGKIQMAKEVFDTVQRND---VSVWNAMISGVAIHGL--AADASAIFTKMEMFNVLP 140 (410)
Q Consensus 79 ~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 140 (410)
.+.++.=|...|+.++|.+.++++..|. .+...++..++-+.+. .+.+..++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4567888888889999988888887552 2334444445544332 345667777777666543
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=58.83 E-value=73 Score=25.95 Aligned_cols=63 Identities=10% Similarity=0.168 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHH
Q 040371 55 GALNHAYWVHNLIIEKKIELN-FILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117 (410)
Q Consensus 55 ~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~ 117 (410)
++......+|..|...|+... ...|-+....+-..|++.+|.++|+.-.++.+....-|...|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~ 156 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSL 156 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 346678888888888776544 455667777777888888888888776666555555444433
No 264
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=58.26 E-value=60 Score=27.18 Aligned_cols=89 Identities=12% Similarity=0.048 Sum_probs=49.9
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 040371 11 SMIGGFVRNARFDEALRFFREMLSS--KVEP----DKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALID 84 (410)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~~~--g~~p----d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 84 (410)
--+..+....++++|+++.++..+. ++++ +.......+..-.....-..+..+.+.+ .. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 3467788899999999999877542 2332 1122223333333333333344444444 22 334555556667
Q ss_pred HHHhcCCHHHHHHHHHhc
Q 040371 85 MYSKCGKIQMAKEVFDTV 102 (410)
Q Consensus 85 ~y~~~g~~~~A~~~f~~m 102 (410)
...+.|+-++|.++|-+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 777778888887777544
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=57.88 E-value=24 Score=30.30 Aligned_cols=52 Identities=12% Similarity=0.113 Sum_probs=30.8
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 151 ACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 151 a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
...+.|.+++++.....-++ .-+.|...-..|+..||-.|+++.|.+-++..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34455666666666665553 23445566666666667777777665555444
No 266
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=56.49 E-value=64 Score=24.63 Aligned_cols=28 Identities=11% Similarity=0.042 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040371 243 DYVLLSNMYCYLKRWDTAENVREIMKKK 270 (410)
Q Consensus 243 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 270 (410)
....|.-+|.+.|++++|.+..+.+.+.
T Consensus 79 cLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 79 CLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3445666777888888888777776654
No 267
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=56.32 E-value=72 Score=31.43 Aligned_cols=17 Identities=18% Similarity=0.511 Sum_probs=13.6
Q ss_pred HHhcCChhHHHHHHHHH
Q 040371 251 YCYLKRWDTAENVREIM 267 (410)
Q Consensus 251 ~~~~g~~~~a~~~~~~m 267 (410)
+...|+|++|.+.++++
T Consensus 548 ~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 548 LYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHTTCHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHhC
Confidence 37899999998777654
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=56.18 E-value=1.1e+02 Score=26.98 Aligned_cols=168 Identities=10% Similarity=0.015 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHH
Q 040371 78 LSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAI----FTKMEMFNVLPDSITFLGLLTACS 153 (410)
Q Consensus 78 ~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~~ 153 (410)
.+.++..=|.+.+++++|.+++..- ...+.++|+...|-++ .+-..+.++++|.....-++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4556667788889999998876542 2335566776665554 455556678888877777776665
Q ss_pred ccCC-----HHHHHHHHHHhhhhcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---C
Q 040371 154 HCGL-----VEEGRKYFDHMRSRYS-IQPQLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTF---K 224 (410)
Q Consensus 154 ~~g~-----~~~a~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~---g 224 (410)
.... .+-..+......+..+ -.-++.....+...|.+.|++.+|+..|-.- -.-|...+..++--+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~-~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG-THDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCccHHHHHHHHHHHHHhcCCC
Confidence 5321 1222223333322111 1236778888999999999999999877632 111455666666655544 4
Q ss_pred chhHHHHHHHhhccCCCchHHH-HHHHHHhcCChhHHHHHHHHHHh
Q 040371 225 RLELGEVAIVNISRLMGGDYVL-LSNMYCYLKRWDTAENVREIMKK 269 (410)
Q Consensus 225 ~~~~a~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~ 269 (410)
...++. .|.+ .+-.|.-.|+...|..+++...+
T Consensus 183 ~~~e~d------------lf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVA------------EFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHH------------HHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHH------------HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 433322 2221 23345677899999999887653
No 269
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=55.24 E-value=5.6 Score=27.57 Aligned_cols=78 Identities=17% Similarity=0.060 Sum_probs=49.7
Q ss_pred CCCccHHHHHHHHHHHHHHHHHCCcccCCccccccCChHHHhhhhhhhhHHHHHHHHhcCCC---CCCcEEEEccccccc
Q 040371 295 RSHPEAQAIDKILGSLIQRTKSEGFLPATELVLMDVSEEEKEGNLYHHSEKLALAYGILKTS---PGTEIRISKNLRICH 371 (410)
Q Consensus 295 ~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~l~~~~e~la~~~~~~~~~---~~~~~~~~~n~~~c~ 371 (410)
...|...+++..+++-..+++..|+.||...+- + +...+.++.+...||=...- .+-.|+++
T Consensus 10 ~~rgdlirIl~~ieekinELk~dG~ePDIiL~G----~----eayef~~e~v~~e~g~e~~~l~~s~LkV~~i------- 74 (103)
T 2pk8_A 10 STRGDLIRILGEIEEKMNELKMDGFNPDIILFG----R----EAYNFLSNLLKKEMEEEGPFTHVSNIKIEIL------- 74 (103)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEC----H----HHHHHHHHHHHHHHTCCCCCCEETTEEEEEC-------
T ss_pred cccccHHHHHHHHHHHHHHHHhcCCCCCeEEEc----H----HHHHHHHHHHhHhhccccchhhccCceEEEH-------
Confidence 345788899999999999999999999987642 2 12233455566666543221 12233333
Q ss_pred chhhHHHHHhhhhCceEEEecCCccc
Q 040371 372 DCHSWIKMISRLLRRVIIVRDRIRFH 397 (410)
Q Consensus 372 ~~~~~~~~~~~~~~~~i~~~~~~~~h 397 (410)
+-.|.+-||-|++-..
T Consensus 75 ----------eELG~DAVV~DSK~LG 90 (103)
T 2pk8_A 75 ----------EELGGDAVVIDSKVLG 90 (103)
T ss_dssp ----------GGGTTEEEEECTTTTT
T ss_pred ----------HhcCCceEEEehhhhc
Confidence 4456788888876553
No 270
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.48 E-value=1.4e+02 Score=27.63 Aligned_cols=176 Identities=11% Similarity=0.044 Sum_probs=99.9
Q ss_pred CCHHHHHHHHHHHHHc-----CCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCC---hhhHHHHHH----HHHHcCC
Q 040371 55 GALNHAYWVHNLIIEK-----KIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRND---VSVWNAMIS----GVAIHGL 122 (410)
Q Consensus 55 ~~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~----~~~~~g~ 122 (410)
++++.|.+.+-.+.+. .......+...++..+.+.|+++...+.+.-+..+- ..+-..|+. .......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5677777766555542 345567888899999999999998877776554331 112223332 2222232
Q ss_pred hHHH--HHHHHHHHHCCCCCC--------HHHHHHHHHHHHccCCHHHHHHHHHHhhhh-cCCCCC---hhHHHHHHHHH
Q 040371 123 AADA--SAIFTKMEMFNVLPD--------SITFLGLLTACSHCGLVEEGRKYFDHMRSR-YSIQPQ---LEHYGAMVDLL 188 (410)
Q Consensus 123 ~~~A--~~l~~~m~~~g~~p~--------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~~~---~~~~~~li~~~ 188 (410)
.+.. +.+..... .+... ...-..|...+-..|++.+|..++..+... ++..+. ...+..-+..|
T Consensus 110 ~d~~~~~~~i~~l~--~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 110 LDLNTRISVIETIR--VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp THHHHHHHHHHCCS--SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH--HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2221 11111111 11111 112235667777889999999988887643 222221 34677777888
Q ss_pred HhcCCHHHHHHHHHhCC-----CC--CCH--HHHHHHHHHHHhcCchhHHHHH
Q 040371 189 GRAGHIEEAYGLITSMT-----ME--PDV--VVWRALLSACRTFKRLELGEVA 232 (410)
Q Consensus 189 ~~~g~~~~A~~~~~~m~-----~~--p~~--~~~~~li~~~~~~g~~~~a~~~ 232 (410)
...+++..|..++++.. .. |+. ..+...+..+...+++..|-+.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~ 240 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY 240 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 88889888888877751 11 221 2334444445556666666555
No 271
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=53.23 E-value=4.2 Score=23.25 Aligned_cols=18 Identities=39% Similarity=0.691 Sum_probs=13.0
Q ss_pred cCCccccc-cCCccCCCCC
Q 040371 392 DRIRFHRF-EGGLCSCGDY 409 (410)
Q Consensus 392 ~~~~~h~~-~~g~~sc~~~ 409 (410)
.|-.-|.. .+|.|||+-|
T Consensus 11 ~CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 11 ACPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCTTSCCCTTSSBTTTTB
T ss_pred CCCCCceecCCceeccccc
Confidence 45445555 6999999976
No 272
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=51.95 E-value=31 Score=26.73 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCC---hhhHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCC
Q 040371 79 SAALIDMYSKCGKIQMAKEVFDTVQRND---VSVWNAMISGVAIHGL--AADASAIFTKMEMFNVLP 140 (410)
Q Consensus 79 ~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 140 (410)
.+.++.=|...|+.++|.+.++++..|. .+...++..++-+.+. .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4567888888888888888888887552 2334444444444322 345667777776666543
No 273
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=51.75 E-value=78 Score=24.17 Aligned_cols=66 Identities=15% Similarity=-0.034 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040371 38 EPDKFTFASVIYGCARLGA---LNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103 (410)
Q Consensus 38 ~pd~~t~~~ll~a~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 103 (410)
.|+..|--...-++.+..+ ...+..+++.+.+.+......-.--|.-+|.|.|++++|++..+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4555554445555555553 45677777777775433233334445556777777777777766654
No 274
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=49.43 E-value=41 Score=25.14 Aligned_cols=73 Identities=5% Similarity=0.103 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCC--HHHHHHHHHHHHHcCCCccHHHHHH
Q 040371 8 SWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA--LNHAYWVHNLIIEKKIELNFILSAA 81 (410)
Q Consensus 8 ~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~ 81 (410)
..+.++.-|...|+.++|...++++..... -..+....+..++-+.+. .+....++..+.+.|+-+.......
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~G 83 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 83 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 457889999999999999999998842111 123344444455544432 3556667777766665544444333
No 275
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=46.63 E-value=2.6e+02 Score=28.82 Aligned_cols=188 Identities=11% Similarity=0.031 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHHCCCCCCHHH--HH--HHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH--HhcCCHHHHH
Q 040371 23 DEALRFFREMLSSKVEPDKFT--FA--SVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMY--SKCGKIQMAK 96 (410)
Q Consensus 23 ~~a~~l~~~m~~~g~~pd~~t--~~--~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y--~~~g~~~~A~ 96 (410)
+++.+.+..+.... +..+ .. ++...+...|+-+....++..+.... +..+...+.-+. .-.|+.+.+.
T Consensus 471 eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~ 544 (963)
T 4ady_A 471 IEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELAD 544 (963)
T ss_dssp HHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGH
T ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHH
Confidence 46677777766532 2221 12 22223345577787888887776532 333333344443 3668877777
Q ss_pred HHHHhccc-CCh-hhHHH---HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhh
Q 040371 97 EVFDTVQR-NDV-SVWNA---MISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSR 171 (410)
Q Consensus 97 ~~f~~m~~-~~~-~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 171 (410)
.+.+.+.. .|. +-|.+ +..+|+-.|+.....++++.+.... ..+......+.-+....|+.+.+.++++.+...
T Consensus 545 ~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~ 623 (963)
T 4ady_A 545 DLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS 623 (963)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc
Confidence 77777653 333 33432 3445677788777777888887642 222222222333444567766777777766642
Q ss_pred cCCCCChhHHHHHHHHHHhcCCH-HHHHHHHHhCCCCCCHHHHHHHHHH
Q 040371 172 YSIQPQLEHYGAMVDLLGRAGHI-EEAYGLITSMTMEPDVVVWRALLSA 219 (410)
Q Consensus 172 ~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~p~~~~~~~li~~ 219 (410)
..|.+.--.++.-+....|.. .+|.+++..+.-.+|..+-..-+-+
T Consensus 624 --~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 624 --HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIA 670 (963)
T ss_dssp --SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 234444444444444445543 5677777777445555444333333
No 276
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=45.04 E-value=52 Score=25.40 Aligned_cols=73 Identities=5% Similarity=0.085 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCC--HHHHHHHHHHHHHcCCCccHHHHHH
Q 040371 8 SWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA--LNHAYWVHNLIIEKKIELNFILSAA 81 (410)
Q Consensus 8 ~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~ 81 (410)
.-+.+|.-|...|+.++|...++++.... --..++...+..++-+.++ .+....++..+.+.|+-+.......
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~G 85 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 85 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 46788999999999999999999884211 1123344444445544322 3456666666666665544444333
No 277
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=44.71 E-value=8.3 Score=25.13 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=18.6
Q ss_pred CceEEEecCCccccccCCccCCC
Q 040371 385 RRVIIVRDRIRFHRFEGGLCSCG 407 (410)
Q Consensus 385 ~~~i~~~~~~~~h~~~~g~~sc~ 407 (410)
...|-+.|.+..|+|+||+-+=+
T Consensus 7 ~k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 7 VKTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEEBTTSCEEEEETTSCEEEE
T ss_pred eeeEecCCCcEEEEEcCCceehh
Confidence 35678899999999999986533
No 278
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=43.47 E-value=1e+02 Score=23.17 Aligned_cols=71 Identities=8% Similarity=-0.060 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHccCC---HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 040371 139 LPDSITFLGLLTACSHCGL---VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM-TMEPDV 210 (410)
Q Consensus 139 ~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 210 (410)
.|+..|--...-++.++.. ..+|..+++...+. +-.-....+--|.-++.+.|++++|.+..+.+ ..+|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 3444443334444454443 45677777777654 21112334445556677888888888777776 566653
No 279
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=43.40 E-value=1.2e+02 Score=23.89 Aligned_cols=48 Identities=19% Similarity=0.055 Sum_probs=19.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCc
Q 040371 177 QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEPDVVVWRALLSACRTFKR 225 (410)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~ 225 (410)
+..+-...+.++++.+..+....+...+ ..++...-...+.++...|.
T Consensus 120 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l-~d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGDERAVEPLIKAL-KDEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp SHHHHHHHHHHHHHHTCGGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc
Confidence 3444444444455444432222222222 12344444444444444443
No 280
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=43.33 E-value=1.3e+02 Score=24.40 Aligned_cols=67 Identities=15% Similarity=0.115 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccH
Q 040371 9 WNSMIGGFVRNARFDEALRFFREMLSSKVEPD-KFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNF 76 (410)
Q Consensus 9 ~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 76 (410)
|-..+..+ ..+...++.++|..|...|+.-. +.-|......+...|++.+|.++|..-++.+-.|-.
T Consensus 83 Wl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 83 WIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp HHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 44444433 13446699999999998876554 457888888889999999999999999999877743
No 281
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.89 E-value=2.3e+02 Score=26.94 Aligned_cols=60 Identities=10% Similarity=0.047 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcccCCh-hhHHH-------HHHHHHHcCChHHHHHHHHHHHH
Q 040371 76 FILSAALIDMYSKCGKIQMAKEVFDTVQRNDV-SVWNA-------MISGVAIHGLAADASAIFTKMEM 135 (410)
Q Consensus 76 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~-~~~~~-------li~~~~~~g~~~~A~~l~~~m~~ 135 (410)
..++|.++..|...+.++.|.++..+..-|.. .+.+- +...+.-.+++.+|.+.|.....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 56677777888888888888888777765522 22121 22334556777777777766554
No 282
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=42.79 E-value=34 Score=24.10 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHH
Q 040371 90 GKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADAS 127 (410)
Q Consensus 90 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 127 (410)
.+.+.|+++++.++.++..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887667655443
No 283
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=42.52 E-value=65 Score=26.96 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=19.0
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 176 PQLEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 176 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
++...-...+..+.+.|+-++|.++|-+.
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 34555556667777777777777776543
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=41.83 E-value=1.2e+02 Score=23.41 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=33.7
Q ss_pred HHHHHHHhcccCCh-----hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 040371 94 MAKEVFDTVQRNDV-----SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDS 142 (410)
Q Consensus 94 ~A~~~f~~m~~~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 142 (410)
++..+|..|...++ .-|-.....+-..|++.+|.++|+.=.+.+-.|-.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 36777777765543 34566666667778888888888877777777743
No 285
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=38.66 E-value=94 Score=21.37 Aligned_cols=61 Identities=10% Similarity=0.078 Sum_probs=38.4
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHH
Q 040371 62 WVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADA 126 (410)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 126 (410)
.++..+.+.|+-.+...- .+- +.....+.|+++++.++.++..+|..++.++...|...-|
T Consensus 26 ~lld~L~~~~vlt~~~~e-~I~---~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 26 YIMDHMISDGFLTISEEE-KVR---NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHTSSCHHHHH-HHH---TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHCCCCCHHHHH-HHH---cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 455555555543322221 111 1356678888888888888888888888888777754433
No 286
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=38.61 E-value=1e+02 Score=23.74 Aligned_cols=79 Identities=11% Similarity=-0.012 Sum_probs=55.1
Q ss_pred CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHH
Q 040371 37 VEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELN-FILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115 (410)
Q Consensus 37 ~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~ 115 (410)
.+-|..-....+.-.-.. +....+|..|.+.|+... ...|-+....+-..|++.+|.++|+.-.++++....-|..
T Consensus 64 YknD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~ 140 (152)
T 4a1g_A 64 YHNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQ 140 (152)
T ss_dssp GTTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 444555444433333222 337899999999887654 5567788888899999999999999888777776666665
Q ss_pred HHH
Q 040371 116 GVA 118 (410)
Q Consensus 116 ~~~ 118 (410)
.|.
T Consensus 141 ~~~ 143 (152)
T 4a1g_A 141 QYR 143 (152)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 287
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=38.59 E-value=82 Score=25.38 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=10.8
Q ss_pred HHHHHHcCCHhHHHHHHHH
Q 040371 13 IGGFVRNARFDEALRFFRE 31 (410)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~ 31 (410)
+...++.|+.+....++..
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4444556666666655544
No 288
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=38.06 E-value=1.5e+02 Score=23.64 Aligned_cols=56 Identities=9% Similarity=-0.101 Sum_probs=25.5
Q ss_pred HHHHHHhcCchhHHHHHHHhhccCCCc--hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 040371 216 LLSACRTFKRLELGEVAIVNISRLMGG--DYVLLSNMYCYLKRWDTAENVREIMKKKG 271 (410)
Q Consensus 216 li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 271 (410)
.+...+..|+.+....++......+.. .-...+....+.|+.+-+..+++...+.|
T Consensus 180 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 180 ALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence 344445667776665554332111111 01123444566777776666665544443
No 289
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=37.96 E-value=2.9e+02 Score=26.84 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=20.9
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHH
Q 040371 13 IGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYW 62 (410)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 62 (410)
+..+.+.+++...+.++.. .+.+...-.....+....|+-..|..
T Consensus 79 l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~ 123 (618)
T 1qsa_A 79 VNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQ 123 (618)
T ss_dssp HHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHH
Confidence 3445556666655554321 12233333344455555565444433
No 290
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=37.64 E-value=64 Score=27.69 Aligned_cols=63 Identities=13% Similarity=0.130 Sum_probs=41.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHCCccc
Q 040371 242 GDYVLLSNMYCYLKRWDTAENVREIMKKKGVRKSQGKSWLELAGVIHQFKAGDRSHPEAQAIDKILGSLIQRTKSEGFLP 321 (410)
Q Consensus 242 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p 321 (410)
.+...|..++..+|++.++.++-..+.+...+ +.. .| ..++..+....+.+....|-+.|..|
T Consensus 201 elvl~Lh~vl~~a~~~~~~~~LA~~VA~e~~~------ly~------~F-----~k~rL~Ell~~ia~sSl~ll~~~~dp 263 (270)
T 3cqc_A 201 MLCFLLHTILHSTGQYQECLQLADMVSSERHK------LYL------VF-----SKEELRKLLQKLRESSLMLLDQGLDP 263 (270)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTHHHHHHCTTTC------GGG------GS-----CHHHHHHHHHHHHHHHHHHHTTTBCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccc------HHH------Hh-----hHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 35567788999999999999999888665432 110 02 22577777777766666666666555
No 291
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=37.57 E-value=64 Score=23.71 Aligned_cols=63 Identities=8% Similarity=0.019 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCC---HhHH---H-HHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHc
Q 040371 8 SWNSMIGGFVRNAR---FDEA---L-RFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEK 70 (410)
Q Consensus 8 ~~n~li~~~~~~g~---~~~a---~-~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 70 (410)
+++.++..|...-. .+++ + -+|..+....+.|+...-..-+..+...++++.|.++|-.+...
T Consensus 21 ~l~~~l~~~~~~~~k~~~~D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 21 PLEQALEDCHGHTKKQVCDDISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 46666666544321 2222 2 35666666667666555555555667788999999998887664
No 292
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.58 E-value=3.9e+02 Score=27.57 Aligned_cols=48 Identities=8% Similarity=-0.067 Sum_probs=32.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCCh----hHHHHHHHHHHhcC
Q 040371 144 TFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQL----EHYGAMVDLLGRAG 192 (410)
Q Consensus 144 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~g 192 (410)
-|..++..+-+.+.++.+.++-+...+... ..|. ..|+.+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 577888888889998888888777764211 1122 35677777766554
No 293
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=35.31 E-value=1.6e+02 Score=23.01 Aligned_cols=78 Identities=9% Similarity=0.007 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHH
Q 040371 37 VEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELN-FILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMIS 115 (410)
Q Consensus 37 ~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~ 115 (410)
.+-|..-....|.-.-.. +....+|..|...|+... ...|-.....+-..|++.+|.++|+.-.+.++.....|-.
T Consensus 59 YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~ 135 (164)
T 2wvi_A 59 YYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQS 135 (164)
T ss_dssp GTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHH
T ss_pred hccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 444555444444333223 336788999999887655 5567788888889999999999999877666555555544
Q ss_pred HH
Q 040371 116 GV 117 (410)
Q Consensus 116 ~~ 117 (410)
.+
T Consensus 136 ~~ 137 (164)
T 2wvi_A 136 QH 137 (164)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 294
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=35.18 E-value=2.6e+02 Score=26.58 Aligned_cols=65 Identities=8% Similarity=-0.085 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHHH--------HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 040371 208 PDVVVWRALLSACRTFKRLELGEVA--------IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGV 272 (410)
Q Consensus 208 p~~~~~~~li~~~~~~g~~~~a~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 272 (410)
.|..-...|-.=+...|..++-.++ +.+..|.+......|-.-|.+.|++-+|.+++-.+-..+.
T Consensus 176 ~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~~ 248 (525)
T 3i5p_A 176 NDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSNF 248 (525)
T ss_dssp CCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSSS
T ss_pred ChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCCC
Confidence 4555545555555666776665555 3444455555677778889999999999999999987743
No 295
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=34.35 E-value=1e+02 Score=23.24 Aligned_cols=64 Identities=6% Similarity=0.054 Sum_probs=45.2
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 040371 131 TKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196 (410)
Q Consensus 131 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 196 (410)
+.|.+.|++++..-. .++..+...+..-.|.++++.+.++ +...+..|...-++.+...|-+.+
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEEE
Confidence 346677887765433 4555555566667788999998865 555677777777889999998765
No 296
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=34.17 E-value=31 Score=21.77 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=18.4
Q ss_pred cCCHhHHHHHHHHHHHC-CCCCCHH
Q 040371 19 NARFDEALRFFREMLSS-KVEPDKF 42 (410)
Q Consensus 19 ~g~~~~a~~l~~~m~~~-g~~pd~~ 42 (410)
+-+++.|+..|.++... .++|+.+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 34789999999999865 4777654
No 297
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.00 E-value=3.2e+02 Score=28.19 Aligned_cols=51 Identities=4% Similarity=-0.119 Sum_probs=36.8
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 040371 148 LLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM 204 (410)
Q Consensus 148 ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 204 (410)
++..|...|..+.+.++..... .++..--.+..+|...|++++|...|++.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~------~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC------SSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHHhhcC------CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6677778888887776554433 24333345667788999999999999988
No 298
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=33.20 E-value=1.8e+02 Score=22.99 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=19.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCC
Q 040371 75 NFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGL 122 (410)
Q Consensus 75 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 122 (410)
|..+-...+....+.|+.+....+.+.+..+|...-...+.++.+.|.
T Consensus 63 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 444444444444444443333333333333443333334444444433
No 299
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=33.06 E-value=1.8e+02 Score=22.97 Aligned_cols=170 Identities=11% Similarity=-0.009 Sum_probs=100.7
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 040371 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALI 83 (410)
Q Consensus 4 ~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 83 (410)
+|...=...+..+.+.|.. ++...+.++.. .+|...-...+.++...++.+....+. .++ -.++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l---~~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLI-KAL---KDEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHH-HHT---TCSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHH-HHH---cCCCHHHHHHHH
Confidence 3433334445555555553 34444444443 346666677777777777643333333 232 256788888888
Q ss_pred HHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 040371 84 DMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRK 163 (410)
Q Consensus 84 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 163 (410)
.+..+.|+.+....+.+.+..++...-...+.++.+.|..+ +...+.++.. .||...-...+.++.+.+. .++..
T Consensus 103 ~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~ 177 (211)
T 3ltm_A 103 VALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRA 177 (211)
T ss_dssp HHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHH
Confidence 88899888665555666666777777777777777777653 5555555553 4566666667777777766 34555
Q ss_pred HHHHhhhhcCCCCChhHHHHHHHHHHh
Q 040371 164 YFDHMRSRYSIQPQLEHYGAMVDLLGR 190 (410)
Q Consensus 164 ~~~~m~~~~~~~~~~~~~~~li~~~~~ 190 (410)
.+..+.++ ++..+-...+.++.+
T Consensus 178 ~L~~~l~d----~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 178 AMEKLAET----GTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHHH----CCHHHHHHHHHHHHC
T ss_pred HHHHHHhC----CCHHHHHHHHHHHHh
Confidence 55555432 344444444444443
No 300
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=31.81 E-value=1.8e+02 Score=22.69 Aligned_cols=170 Identities=11% Similarity=0.039 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHH
Q 040371 39 PDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGVA 118 (410)
Q Consensus 39 pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~ 118 (410)
||...-...+.++...+..+....+.+.+ + .++..+-...+....+.|..+....+.+.+..++...-...+.++.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKAL-K---DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALG 101 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHH-c---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34555555555555555432222222222 1 3455555555566666665544444445555566555555566666
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 040371 119 IHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAY 198 (410)
Q Consensus 119 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 198 (410)
+.|..+ +...+.++.. .+|...-...+.++.+.+..+ +...+..+.. .++..+-...+.++++.|..+ +.
T Consensus 102 ~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~A~~aL~~~~~~~-~~ 171 (201)
T 3ltj_A 102 QIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK----DEDGWVRQSAADALGEIGGER-VR 171 (201)
T ss_dssp HHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCSHH-HH
T ss_pred HhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCchh-HH
Confidence 666543 3333333332 345555555555665555532 3333333332 235555566666666666533 33
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh
Q 040371 199 GLITSMTMEPDVVVWRALLSACRT 222 (410)
Q Consensus 199 ~~~~~m~~~p~~~~~~~li~~~~~ 222 (410)
..+..+-..++...-...+.+..+
T Consensus 172 ~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 172 AAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 333333122444444444444443
No 301
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=31.72 E-value=1.1e+02 Score=24.83 Aligned_cols=51 Identities=14% Similarity=0.076 Sum_probs=23.3
Q ss_pred HHHhhCCHHHHHHHHHHHHHcCCCccHH--HHHHHHHHHHhcCCHHHHHHHHH
Q 040371 50 GCARLGALNHAYWVHNLIIEKKIELNFI--LSAALIDMYSKCGKIQMAKEVFD 100 (410)
Q Consensus 50 a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~ 100 (410)
..+..|+.+..+.+++.+.+.|..++.. ...+.+...+..|+.+-+..+++
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 67 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH
Confidence 3345566666666666555554433211 01122333344555554444444
No 302
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=31.68 E-value=2.6e+02 Score=24.40 Aligned_cols=129 Identities=10% Similarity=0.071 Sum_probs=74.9
Q ss_pred CCHhHHHHHHHHHHHC-C----CCCCHHHHHHHH---HHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 040371 20 ARFDEALRFFREMLSS-K----VEPDKFTFASVI---YGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGK 91 (410)
Q Consensus 20 g~~~~a~~l~~~m~~~-g----~~pd~~t~~~ll---~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 91 (410)
-.-++|..+|..+... + ..|+.......+ ..+.+.-+ -+++..+.+.|+.|..++..-++..+++.=.
T Consensus 163 ~~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp 238 (331)
T 3qye_A 163 MSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFP 238 (331)
T ss_dssp SCHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSC
T ss_pred hhHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCC
Confidence 3567899999888643 1 334433222222 22222222 3677888889999998899999999998888
Q ss_pred HHHHHHHHHhcccC-ChhhHHHHHHH-------HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 040371 92 IQMAKEVFDTVQRN-DVSVWNAMISG-------VAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHC 155 (410)
Q Consensus 92 ~~~A~~~f~~m~~~-~~~~~~~li~~-------~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 155 (410)
++.+.++|+.+... ....+-..+.. ..+..+.++.+..++.... ..+......++.-....
T Consensus 239 ~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p---~~~~~di~~li~~A~~l 307 (331)
T 3qye_A 239 LGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLP---NLGLVQMEKTINQVFEM 307 (331)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTT---CCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhC
Confidence 99999999977532 22222211111 1223467777777766321 12334455555433333
No 303
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=30.49 E-value=3.1e+02 Score=24.88 Aligned_cols=224 Identities=12% Similarity=0.033 Sum_probs=104.0
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHc--CCCccHHHHHHH-
Q 040371 11 SMIGGFVRNARFDEALRFFREMLSSKVEPD-----KFTFASVIYGCARLGALNHAYWVHNLIIEK--KIELNFILSAAL- 82 (410)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~~~g~~pd-----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~l- 82 (410)
-++.-|...|++.+|++++.++.+.=-+.| ...|..-+..|...+++..++..+...... .+.+++.+-..+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 467777888888888888877765311112 123445556666777777777776665432 122233222111
Q ss_pred ---HHHHH-hcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 040371 83 ---IDMYS-KCGKIQMAKEVFDTVQRNDVSVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLV 158 (410)
Q Consensus 83 ---i~~y~-~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 158 (410)
.-++. ..+++..|...|-+.- ..|...|.+ .+. +...|..| .+..... .
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf-----------~~f~~~~~~-~~~-------------~~lkYlvL-~aLl~~~-r 236 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF-----------EGFDSVDSV-KAL-------------TSLKYMLL-CKIMLGQ-S 236 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH-----------HHHTTTCHH-HHH-------------HHHHHHHH-HHHHTTC-G
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH-----------hcccccccH-HHH-------------HHHHHHHH-HHHHcCC-H
Confidence 11233 4566666655553320 111111110 000 11223222 2222222 2
Q ss_pred HHHHHHHH-HhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHH---HHHHHHHHHhcCchhHHHHH
Q 040371 159 EEGRKYFD-HMRSRYSIQPQLEHYGAMVDLLGRAGHIEEAYGLITSM--TMEPDVVV---WRALLSACRTFKRLELGEVA 232 (410)
Q Consensus 159 ~~a~~~~~-~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~---~~~li~~~~~~g~~~~a~~~ 232 (410)
.+-..++. .....+ ..|....+..++.+| +.+++.+...++... .+..|... +..|...... .+..
T Consensus 237 ~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~-----~~L~- 308 (394)
T 3txn_A 237 DDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLE-----QNLC- 308 (394)
T ss_dssp GGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHH-----HHHH-
T ss_pred HHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH-----HHHH-
Confidence 22222222 111112 234555556666654 445676666666655 23445543 2222222111 1111
Q ss_pred HHhhccCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 040371 233 IVNISRLMGGDYVLLSNMYCYLKRWDTAENVREIMKKKGV 272 (410)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 272 (410)
.-..|-....+..+...+.- ..++++..+-+|...|.
T Consensus 309 -~i~~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 309 -RIIEPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp -HHHTTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred -HHhHhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 11234444455555555532 57899999999988875
No 304
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=30.29 E-value=12 Score=21.56 Aligned_cols=11 Identities=27% Similarity=0.791 Sum_probs=8.9
Q ss_pred ccccccchhhH
Q 040371 366 NLRICHDCHSW 376 (410)
Q Consensus 366 n~~~c~~~~~~ 376 (410)
++|+|.+|+.-
T Consensus 16 ~YRvC~~CgkP 26 (44)
T 2lo3_A 16 QYRVCEKCGKP 26 (44)
T ss_dssp CEEECTTTCCE
T ss_pred cchhhcccCCc
Confidence 58999999853
No 305
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=29.71 E-value=1.9e+02 Score=24.34 Aligned_cols=86 Identities=3% Similarity=-0.062 Sum_probs=37.7
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCchhHHHHHHHhhc---cCCCchHHHHHHHHHhcCChhHH
Q 040371 185 VDLLGRAGHIEEAYGLITSMTMEPDV-VVWRALLSACRTFKRLELGEVAIVNIS---RLMGGDYVLLSNMYCYLKRWDTA 260 (410)
Q Consensus 185 i~~~~~~g~~~~A~~~~~~m~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a 260 (410)
+..-+..|+.+-+.-+++.-....+. .-++. +...+..|+.+.+..++...- ..+..-....+..-+..|+.+
T Consensus 133 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~-- 209 (285)
T 3kea_A 133 FYHAVMLNDVSIVSYFLSEIPSTFDLAILLSC-IHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIE-- 209 (285)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHH-HHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHH--
T ss_pred HHHHHHcCCHHHHHHHHhCCCccccccCCccH-HHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHH--
Confidence 33345566666555555543211222 22333 334455666666655532211 111111222233334455543
Q ss_pred HHHHHHHHhCCCcCC
Q 040371 261 ENVREIMKKKGVRKS 275 (410)
Q Consensus 261 ~~~~~~m~~~g~~~~ 275 (410)
+.+.+.+.|..++
T Consensus 210 --~v~~Ll~~gad~~ 222 (285)
T 3kea_A 210 --MLQALFKYDINIY 222 (285)
T ss_dssp --HHHHHTTSCBCST
T ss_pred --HHHHHHHcCCCCC
Confidence 4455556676544
No 306
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=29.46 E-value=1.5e+02 Score=20.89 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HH-HHHHHHHHhhhhcCCCCChhHHHHH
Q 040371 125 DASAIFTKMEMFNVLPDSITFLGLLTACSHCGL-VE-EGRKYFDHMRSRYSIQPQLEHYGAM 184 (410)
Q Consensus 125 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~-~a~~~~~~m~~~~~~~~~~~~~~~l 184 (410)
.|.++-++...-|+.|+..+...++..|...+. .+ -+.+.+..-....|..|+....+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 355666677777899988888888888876664 11 1222222212234777877665543
No 307
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=29.30 E-value=2e+02 Score=22.39 Aligned_cols=34 Identities=9% Similarity=0.084 Sum_probs=28.5
Q ss_pred CchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcC
Q 040371 241 GGDYVLLSNMYCYLKRWDTAENVREIMKKKGVRK 274 (410)
Q Consensus 241 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 274 (410)
+..|......+...|++.+|.++|+.-.+++-.|
T Consensus 96 AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 96 AQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3457788888999999999999999988887655
No 308
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=29.08 E-value=1.2e+02 Score=25.00 Aligned_cols=55 Identities=9% Similarity=-0.022 Sum_probs=29.8
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHH--hhCCHHHHHHHHHHH
Q 040371 13 IGGFVRNARFDEALRFFREMLSSKVEPDKFT-------FASVIYGCA--RLGALNHAYWVHNLI 67 (410)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t-------~~~ll~a~~--~~~~~~~a~~~~~~~ 67 (410)
+...++.|+.+....+++.+.+.|..++... .+.+..|+. +.|+.+-++.+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3344567778777777776666555544322 233333332 456666555555543
No 309
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=28.58 E-value=1.7e+02 Score=24.21 Aligned_cols=50 Identities=14% Similarity=0.225 Sum_probs=37.8
Q ss_pred HHHHHHHHhcccCCh-----hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 040371 93 QMAKEVFDTVQRNDV-----SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDS 142 (410)
Q Consensus 93 ~~A~~~f~~m~~~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 142 (410)
+++..+|..|....+ .-|-.....+-..|++.+|.++|+.=.+.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 466778888776543 45667777777889999999999988887777743
No 310
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.57 E-value=3.8e+02 Score=25.36 Aligned_cols=64 Identities=16% Similarity=0.034 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHHC-CCCCCH--HHHHH-HHHHHHhhCCHHHHHHHHHHHHHc
Q 040371 7 VSWNSMIGGFVRNARFDEALRFFREMLSS-KVEPDK--FTFAS-VIYGCARLGALNHAYWVHNLIIEK 70 (410)
Q Consensus 7 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~-g~~pd~--~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~ 70 (410)
+.+|.++..|...+.++.|..+..+..-- .-.+|. .+|.- +....+-.+++.+|.+.+....+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 46788888888888888888887776310 001111 12221 223444556666666666665543
No 311
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=28.44 E-value=1.6e+02 Score=22.41 Aligned_cols=64 Identities=6% Similarity=0.075 Sum_probs=42.3
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 040371 131 TKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196 (410)
Q Consensus 131 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 196 (410)
+.+.+.|++++.. -..++..+...+..-.|.++++.+.++ +...+..|.-.-++.+...|-+.+
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcEEE
Confidence 3456678776543 334556666666677788888888765 555566677777888888887765
No 312
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=28.41 E-value=1.2e+02 Score=25.02 Aligned_cols=60 Identities=13% Similarity=0.191 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHH
Q 040371 58 NHAYWVHNLIIEKKIELN-FILSAALIDMYSKCGKIQMAKEVFDTVQRNDVSVWNAMISGV 117 (410)
Q Consensus 58 ~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~ 117 (410)
+....+|..|...|+... ...|-.....+-..|++.+|.++|+.-.++.+....-|...|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~ 191 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKY 191 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 467789999999987655 556788888899999999999999988777666666666554
No 313
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=28.17 E-value=1.7e+02 Score=23.43 Aligned_cols=21 Identities=5% Similarity=-0.046 Sum_probs=13.4
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 040371 249 NMYCYLKRWDTAENVREIMKK 269 (410)
Q Consensus 249 ~~~~~~g~~~~a~~~~~~m~~ 269 (410)
...+..|+.+.+.++.+.+.+
T Consensus 215 ~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 215 QCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 334556667777777777655
No 314
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=27.58 E-value=2.9e+02 Score=23.61 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=31.9
Q ss_pred HHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040371 51 CARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103 (410)
Q Consensus 51 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 103 (410)
..+.|+++.+++....-++.. +.|...-..|+..++-.|+++.|.+-++...
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 345566666666666555553 4566666666666777777776666555443
No 315
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=27.30 E-value=12 Score=18.44 Aligned_cols=14 Identities=43% Similarity=1.391 Sum_probs=9.1
Q ss_pred ccccCCcc--CCCCCC
Q 040371 397 HRFEGGLC--SCGDYW 410 (410)
Q Consensus 397 h~~~~g~~--sc~~~~ 410 (410)
-+|.+|.| .|++-|
T Consensus 7 v~fgngfcgdncgnsw 22 (27)
T 2hgo_A 7 VNFGNGFCGDNCGNSW 22 (27)
T ss_dssp EEETTTEEECSSSCEE
T ss_pred EeecCccccCCcCCcc
Confidence 36777777 466655
No 316
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.19 E-value=94 Score=22.79 Aligned_cols=42 Identities=5% Similarity=-0.142 Sum_probs=29.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 040371 129 IFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRS 170 (410)
Q Consensus 129 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 170 (410)
+|+.+....+.|+...-..-|..+...++++.|.+++-.+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 556666666666655555555666778899999998888774
No 317
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=26.73 E-value=1.5e+02 Score=26.62 Aligned_cols=66 Identities=8% Similarity=0.126 Sum_probs=35.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--HHHHHHHHHHhhhhcCCCCC
Q 040371 110 WNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGL--VEEGRKYFDHMRSRYSIQPQ 177 (410)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~~~ 177 (410)
-+.+|.-|...|+.+||...++++..-... ..+....+..+.-+.+. .+...+++..+.+. |+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~-glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC-CCCCH
Confidence 456667777777777777777776422111 12334444444444332 34566666666644 44433
No 318
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=26.60 E-value=3.2e+02 Score=23.78 Aligned_cols=25 Identities=12% Similarity=0.343 Sum_probs=22.0
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHH
Q 040371 9 WNSMIGGFVRNARFDEALRFFREML 33 (410)
Q Consensus 9 ~n~li~~~~~~g~~~~a~~l~~~m~ 33 (410)
..++|.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4678999999999999999998864
No 319
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=26.37 E-value=2.2e+02 Score=27.29 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 040371 43 TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQM 94 (410)
Q Consensus 43 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 94 (410)
-.--++..|++.|-.+.|++++..+-..-+. +...+ .-+.+|+|.|++++
T Consensus 518 d~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~ 567 (570)
T 3f3f_C 518 DIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYEL 567 (570)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhh
Confidence 3444555666666666666665555433221 22233 33345555555544
No 320
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=25.24 E-value=1.9e+02 Score=25.99 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhhC-CHHHHHHHHHHHHHcCCCccHHHHHHH
Q 040371 8 SWNSMIGGFVRNARFDEALRFFREMLSSKVEPD----KFTFASVIYGCARLG-ALNHAYWVHNLIIEKKIELNFILSAAL 82 (410)
Q Consensus 8 ~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l 82 (410)
.-.++|.-|...|+.++|...++++. .|+ .+.+..+..++-+.. ..+.+-.++..+.+.++-+.......+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~----~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf 89 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMR----APKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAF 89 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT----CCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC----CchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 45789999999999999999999984 243 233444444443221 234455667777776665555555555
Q ss_pred HHHHH
Q 040371 83 IDMYS 87 (410)
Q Consensus 83 i~~y~ 87 (410)
...+.
T Consensus 90 ~~lle 94 (364)
T 3l6a_A 90 LNVLD 94 (364)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44443
No 321
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=24.87 E-value=1.2e+02 Score=25.79 Aligned_cols=171 Identities=9% Similarity=-0.010 Sum_probs=84.9
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChH
Q 040371 48 IYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQRN---DVSVWNAMISGVAIHGLAA 124 (410)
Q Consensus 48 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~ 124 (410)
+...+..|+.+.+..++ +.|..++..-..+.+...+..|+.+-+..+++.-..+ |..-++.+..+ +..|+.+
T Consensus 35 L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A-~~~g~~~ 109 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYA-VDSGNMQ 109 (285)
T ss_dssp HHHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHH
T ss_pred HHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH-HHcCCHH
Confidence 33445567776555444 4444433222334555667788888887777754332 33334444433 4566655
Q ss_pred HHHHHHHHHHHCCCCCCHHH---HHHHHHHHHccCCHHHHHHHHHHhhhhcCCCC-Ch-hHHHHHHHHHHhcCCHHHHHH
Q 040371 125 DASAIFTKMEMFNVLPDSIT---FLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP-QL-EHYGAMVDLLGRAGHIEEAYG 199 (410)
Q Consensus 125 ~A~~l~~~m~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~-~~-~~~~~li~~~~~~g~~~~A~~ 199 (410)
-+.-++ +.|..|+... +.+.+...+..|..+-+..+++. |..+ +. ...+. +..-++.|+.+-+.-
T Consensus 110 ~v~~Ll----~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~-----g~~~~~~~~g~t~-L~~A~~~g~~~~v~~ 179 (285)
T 3kea_A 110 TVKLFV----KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE-----IPSTFDLAILLSC-IHITIKNGHVDMMIL 179 (285)
T ss_dssp HHHHHH----HHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT-----SCTTCCCSTHHHH-HHHHHHTTCHHHHHH
T ss_pred HHHHHH----hcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhC-----CCccccccCCccH-HHHHHHcChHHHHHH
Confidence 443333 3354444322 12344455566777665555543 2222 22 33333 444567788777766
Q ss_pred HHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHH
Q 040371 200 LITSM--TMEPDVVVWRALLSACRTFKRLELGEVAI 233 (410)
Q Consensus 200 ~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 233 (410)
+++.- .-..|..-++..+...+..|+.+.+..++
T Consensus 180 Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll 215 (285)
T 3kea_A 180 LLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALF 215 (285)
T ss_dssp HHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHT
T ss_pred HHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHH
Confidence 66542 01112222222334445567766655553
No 322
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.85 E-value=1.9e+02 Score=25.30 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccC
Q 040371 80 AALIDMYSKCGKIQMAKEVFDTVQRN 105 (410)
Q Consensus 80 ~~li~~y~~~g~~~~A~~~f~~m~~~ 105 (410)
+.++.=|...|+.++|.+.++++..|
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p 195 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVP 195 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 34555555555566665555555443
No 323
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=24.65 E-value=1.9e+02 Score=20.57 Aligned_cols=81 Identities=14% Similarity=-0.094 Sum_probs=54.5
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 040371 20 ARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF 99 (410)
Q Consensus 20 g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 99 (410)
.+.++|..+-+.+...+. ....-.+=++.+.+.|++++|..+.+.. .-||...|-+|-. .|.|.-+++..-+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 457788888777766543 2222223345567889999988765443 3688888888754 6788888888887
Q ss_pred HhcccCChh
Q 040371 100 DTVQRNDVS 108 (410)
Q Consensus 100 ~~m~~~~~~ 108 (410)
.++...+..
T Consensus 92 ~~la~sg~p 100 (115)
T 2uwj_G 92 AGLGGSSDP 100 (115)
T ss_dssp HHHHTCSSH
T ss_pred HHHHhCCCH
Confidence 777655443
No 324
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=24.41 E-value=90 Score=21.19 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 040371 158 VEEGRKYFDHMRSRYSIQPQLEHYGAMVDLL 188 (410)
Q Consensus 158 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~ 188 (410)
.+++...|..|..+.++.|+. +|...+...
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~~-tWe~~~~~i 45 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAFS-TWEKELHKI 45 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSSS-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCCC-CHHHHHHHH
Confidence 456666666666666666544 444444433
No 325
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=24.24 E-value=3.5e+02 Score=23.47 Aligned_cols=174 Identities=8% Similarity=-0.032 Sum_probs=77.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-------------------
Q 040371 83 IDMYSKCGKIQMAKEVFDTVQRNDV-SVWNAMISGVAIHGLAADASAIFTKMEMFNVLPDS------------------- 142 (410)
Q Consensus 83 i~~y~~~g~~~~A~~~f~~m~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------------------- 142 (410)
+...+..|+.+-+..+++.-...+. .-++.+.. -+..|+.+-+..+++.-...|..|+.
T Consensus 57 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (364)
T 3ljn_A 57 LHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHL-AVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKH 135 (364)
T ss_dssp HHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHH-HHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEE
T ss_pred HHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHH-HHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCC
Confidence 3444556666666666655443322 22333322 34456666555555554333443332
Q ss_pred -HHHHHHHHHHHccC--CHHHHHHHHHHhhhhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCC------CC-CC
Q 040371 143 -ITFLGLLTACSHCG--LVEEGRKYFDHMRSRYSIQPQ---LEHYGAMVDLLGRAGHIEEAYGLITSMT------ME-PD 209 (410)
Q Consensus 143 -~t~~~ll~a~~~~g--~~~~a~~~~~~m~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~-p~ 209 (410)
.-.+.| ...+..| ..+-+..+++. |..++ ....+. +..-+..|+.+-+..+++.-. +. .|
T Consensus 136 ~~g~t~L-~~A~~~g~~~~~~v~~Ll~~-----ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 208 (364)
T 3ljn_A 136 CKGQTAL-HWCVGLGPEYLEMIKILVQL-----GASPTAKDKADETP-LMRAMEFRNREALDLMMDTVPSKSSLRLDYAN 208 (364)
T ss_dssp ESCCCHH-HHHHHSCGGGHHHHHHHHHH-----TCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCC
T ss_pred CCCCCHH-HHHHHcCCchHHHHHHHHHc-----CCCCcccCCCCCCH-HHHHHHcCCHHHHHHHHhcccccccccccccC
Confidence 112223 3334445 55555544443 33322 112223 333456677776666665421 11 12
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHhhccC---CCchHHHHHHHHHhcCChhHHHHHHHH
Q 040371 210 VVVWRALLSACRTFKRLELGEVAIVNISRL---MGGDYVLLSNMYCYLKRWDTAENVREI 266 (410)
Q Consensus 210 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~ 266 (410)
..-++.|. ..+..|+.+.+..++...-.. +..-. +-+..-+..|..+-+..+++.
T Consensus 209 ~~g~t~L~-~A~~~g~~~~v~~Ll~~gad~~~~d~~g~-tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 209 KQGNSHLH-WAILINWEDVAMRFVEMGIDVNMEDNEHT-VPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp TTCCCTTH-HHHTTTCHHHHHHHHTTTCCTTCCCTTSC-CHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCcHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHhChHHHHHHHHHc
Confidence 22223333 334666666655554322111 11111 223334556777766666654
No 326
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=24.14 E-value=2e+02 Score=20.54 Aligned_cols=82 Identities=11% Similarity=-0.033 Sum_probs=56.0
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 040371 20 ARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVF 99 (410)
Q Consensus 20 g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 99 (410)
.+.++|..+-+.+...+. ....-.+=++.+.+.|++++|..+.+.. .-||...|-+|-. .|.|.-+++..-+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 457888888777776543 2222223345567899999998876544 3788888888854 5778888888888
Q ss_pred HhcccCChhh
Q 040371 100 DTVQRNDVSV 109 (410)
Q Consensus 100 ~~m~~~~~~~ 109 (410)
.++...+...
T Consensus 93 ~~la~sg~p~ 102 (116)
T 2p58_C 93 NRLARSQDPR 102 (116)
T ss_dssp HHHTTCCCHH
T ss_pred HHHHhCCCHH
Confidence 7776554443
No 327
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=23.72 E-value=1.7e+02 Score=23.33 Aligned_cols=17 Identities=6% Similarity=0.069 Sum_probs=9.1
Q ss_pred HHHHcCCHhHHHHHHHH
Q 040371 15 GFVRNARFDEALRFFRE 31 (410)
Q Consensus 15 ~~~~~g~~~~a~~l~~~ 31 (410)
..++.|+.+.+..+++.
T Consensus 8 ~A~~~g~~~~v~~Ll~~ 24 (228)
T 2dzn_A 8 QACMENEFFKVQELLHS 24 (228)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhc
Confidence 34456666655555543
No 328
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=23.68 E-value=1.8e+02 Score=22.57 Aligned_cols=81 Identities=9% Similarity=0.057 Sum_probs=35.6
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHH--HHHHHHHHHhcCCHH
Q 040371 16 FVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFIL--SAALIDMYSKCGKIQ 93 (410)
Q Consensus 16 ~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~ 93 (410)
.+..|+.+....++..-...--.+|..-++. +...+..|+.+.+ +.+++.|..++... ..+.+...+..|+.+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTP-LNIAVHNNDIEIA----KALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCH-HHHHHHHTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCH-HHHHHHcCCHHHH----HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 3456777766666543210000112222223 3333455665443 34444554443211 112233445567776
Q ss_pred HHHHHHHh
Q 040371 94 MAKEVFDT 101 (410)
Q Consensus 94 ~A~~~f~~ 101 (410)
-+..+++.
T Consensus 87 ~~~~Ll~~ 94 (201)
T 3hra_A 87 ILAYMLKH 94 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66666643
No 329
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=23.52 E-value=2.3e+02 Score=25.42 Aligned_cols=72 Identities=6% Similarity=0.111 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhCC--HHHHHHHHHHHHHcCCCccHHHHHH
Q 040371 9 WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFTFASVIYGCARLGA--LNHAYWVHNLIIEKKIELNFILSAA 81 (410)
Q Consensus 9 ~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~ 81 (410)
-+.+|.-|...|+.++|...++++..-... ..+....+..+.-+.++ .+...+++..+.+.|+-+.......
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~G 293 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 293 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 456666666777777777776666321111 12233333334333222 2344555555555554444333333
No 330
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.31 E-value=1.4e+02 Score=23.06 Aligned_cols=72 Identities=11% Similarity=0.029 Sum_probs=48.0
Q ss_pred HHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc-CCCCChhHHHHHHHHHHhcCCHHH
Q 040371 124 ADASAIFTK-MEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRY-SIQPQLEHYGAMVDLLGRAGHIEE 196 (410)
Q Consensus 124 ~~A~~l~~~-m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~~li~~~~~~g~~~~ 196 (410)
+.+++-+.+ +.+.|.+++.. -..++..+...+..-.|.++++.+.++. +...+..|.-.-++.+...|-+.+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 455555544 44568887653 3456777777777778899999887531 334466666666788899987764
No 331
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=22.91 E-value=64 Score=20.36 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040371 124 ADASAIFTKMEMFNVLPDSITFLGLLTAC 152 (410)
Q Consensus 124 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 152 (410)
++|.+.|.+|++..-.+..-||.-.+..+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 56666666666543223335566665555
No 332
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=22.50 E-value=2.2e+02 Score=25.09 Aligned_cols=108 Identities=7% Similarity=0.036 Sum_probs=65.8
Q ss_pred HhHHHHHHHHHHHC---CCCCCHH---HHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 040371 22 FDEALRFFREMLSS---KVEPDKF---TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMA 95 (410)
Q Consensus 22 ~~~a~~l~~~m~~~---g~~pd~~---t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 95 (410)
-++|..+|..+... ...++.. .....+..+.+.-+ -+++..+.+.|+.|..+++.-++..+++.=.++.+
T Consensus 188 E~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~d----P~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~ 263 (345)
T 2qfz_A 188 EADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRID----EQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCT 263 (345)
T ss_dssp HHHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHH
T ss_pred HHHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHH
Confidence 35677777777653 1222222 22223333333323 25677888889999999999999999998889999
Q ss_pred HHHHHhcccC-C-h---hhHH--HHHHH----HHHcCChHHHHHHHHHH
Q 040371 96 KEVFDTVQRN-D-V---SVWN--AMISG----VAIHGLAADASAIFTKM 133 (410)
Q Consensus 96 ~~~f~~m~~~-~-~---~~~~--~li~~----~~~~g~~~~A~~l~~~m 133 (410)
.++|+.+... + . ..|- +++.. .....+.++.+.+++.+
T Consensus 264 lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~ 312 (345)
T 2qfz_A 264 IRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNL 312 (345)
T ss_dssp HHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSC
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcC
Confidence 9999988743 2 1 1121 22221 12346777777777653
No 333
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=22.06 E-value=3.7e+02 Score=23.31 Aligned_cols=213 Identities=11% Similarity=0.052 Sum_probs=103.1
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 040371 4 KDVVSWNSMIGGFVRNARFDEALRFFREMLSSKVEPDKFT--FASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAA 81 (410)
Q Consensus 4 ~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 81 (410)
+|..-++.|..+ +..|+.+-+..++ +.|..++... -.+.|...+..|+.+-++. +++.|..++.....+
T Consensus 16 ~d~~g~t~L~~A-a~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~g~t 86 (364)
T 3ljn_A 16 SDDENMEKIHVA-ARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDTAKY----LASVGEVHSLWHGQK 86 (364)
T ss_dssp CCHHHHHHHHHH-HHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHH----HHHHCCCCCCBTTBC
T ss_pred cCCCCCCHHHHH-HHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHHHHH----HHHCCCCccccCCCC
Confidence 344455555554 4667776555544 4555554321 1234444556677765544 444554443322233
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc------------------------CChhhHHHHHHHHHHcC--ChHHHHHHHHHHHH
Q 040371 82 LIDMYSKCGKIQMAKEVFDTVQR------------------------NDVSVWNAMISGVAIHG--LAADASAIFTKMEM 135 (410)
Q Consensus 82 li~~y~~~g~~~~A~~~f~~m~~------------------------~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~ 135 (410)
.+..-+..|+.+-+..+++.... +|..-++.|.. .+..| +.+ +++.+.+
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~-A~~~g~~~~~----~v~~Ll~ 161 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHW-CVGLGPEYLE----MIKILVQ 161 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHH-HHHSCGGGHH----HHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHH-HHHcCCchHH----HHHHHHH
Confidence 44555678888888888776221 11122344443 34456 443 3333334
Q ss_pred CCCCCCHHH---HHHHHHHHHccCCHHHHHHHHHHhhhhcCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-
Q 040371 136 FNVLPDSIT---FLGLLTACSHCGLVEEGRKYFDHMRSRYSIQP---QLEHYGAMVDLLGRAGHIEEAYGLITSMTMEP- 208 (410)
Q Consensus 136 ~g~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p- 208 (410)
.|..|+... .+. +...+..|..+-+..+++.-....++.+ +..-.+.| ..-+..|+.+-+.-+++. +..+
T Consensus 162 ~ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~-gad~~ 238 (364)
T 3ljn_A 162 LGASPTAKDKADETP-LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWEDVAMRFVEM-GIDVN 238 (364)
T ss_dssp HTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHHHHHHHHTT-TCCTT
T ss_pred cCCCCcccCCCCCCH-HHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH-HHHHHcCCHHHHHHHHHc-CCCCC
Confidence 455554322 233 3444567888877777765332111111 11122222 234567777666655553 3332
Q ss_pred --CHHHHHHHHHHHHhcCchhHHHHHHH
Q 040371 209 --DVVVWRALLSACRTFKRLELGEVAIV 234 (410)
Q Consensus 209 --~~~~~~~li~~~~~~g~~~~a~~~~~ 234 (410)
|..-++.|. ..+..|+.+.+..++.
T Consensus 239 ~~d~~g~tpL~-~A~~~g~~~~v~~Ll~ 265 (364)
T 3ljn_A 239 MEDNEHTVPLY-LSVRAAMVLLTKELLQ 265 (364)
T ss_dssp CCCTTSCCHHH-HHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCHHH-HHHHhChHHHHHHHHH
Confidence 222233333 3345566666555533
No 334
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=21.51 E-value=3.2e+02 Score=24.54 Aligned_cols=233 Identities=9% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCC--HHHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040371 26 LRFFREMLSSKVEPD--KFTFASVIYGCARLGALNHAYWVHNLIIEKKIELNFILSAALIDMYSKCGKIQMAKEVFDTVQ 103 (410)
Q Consensus 26 ~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 103 (410)
+++++.+.+.|..|+ .....+.+...+..|+.+-++.+++. ...+........+.+...++.|+.+-+.-+++.-.
T Consensus 27 ~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 104 (437)
T 1n11_A 27 LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 104 (437)
T ss_dssp HHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCC
Q ss_pred cCChh--hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHH
Q 040371 104 RNDVS--VWNAMISGVAIHGLAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHY 181 (410)
Q Consensus 104 ~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 181 (410)
.++.. .-.+.+...++.|+.+-+..+++. ..........-.+.+...+..|+.+-+..+++.-. .+.......
T Consensus 105 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~~~~g 179 (437)
T 1n11_A 105 NPNLATTAGHTPLHIAAREGHVETVLALLEK--EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA---HPNAAGKNG 179 (437)
T ss_dssp CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCSSC
T ss_pred CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC--CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC---CCCCCCCCC
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCchHH--HHHHHHHhcCChh
Q 040371 182 GAMVDLLGRAGHIEEAYGLITSM-TMEPDVVVWRALLSACRTFKRLELGEVAIVNISRLMGGDYV--LLSNMYCYLKRWD 258 (410)
Q Consensus 182 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~ 258 (410)
...+...+..|+.+-+.-+++.- ........-.+.+...+..|+.+....++......+..... ..+...+..|..+
T Consensus 180 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~ 259 (437)
T 1n11_A 180 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE 259 (437)
T ss_dssp CCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHH
Q ss_pred HHHHHHH
Q 040371 259 TAENVRE 265 (410)
Q Consensus 259 ~a~~~~~ 265 (410)
-+..+++
T Consensus 260 ~v~~Ll~ 266 (437)
T 1n11_A 260 MVALLLS 266 (437)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
No 335
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.47 E-value=1.3e+02 Score=22.15 Aligned_cols=48 Identities=13% Similarity=0.163 Sum_probs=24.7
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 040371 148 LLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHIEE 196 (410)
Q Consensus 148 ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 196 (410)
++..+...+..-.|.++++.+.++ +...+..|.-..++.+...|-+.+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~-~~~is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRR-GENIGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCCEEE
Confidence 344444444444556666666543 333444555555666666665543
No 336
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.20 E-value=1.5e+02 Score=23.09 Aligned_cols=123 Identities=10% Similarity=0.005 Sum_probs=58.8
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCccHH--HHHHHH
Q 040371 9 WNSMIGGFVRNARFDEALRFFREMLSSKVEPDKF---TFASVIYGCARLGALNHAYWVHNLIIEKKIELNFI--LSAALI 83 (410)
Q Consensus 9 ~n~li~~~~~~g~~~~a~~l~~~m~~~g~~pd~~---t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li 83 (410)
++.|..+ ++.|+.+ +++.+.+.|..|+.. ..+ .+...+..|+.+-++.+++. .+..++.. ...+.+
T Consensus 40 ~t~L~~A-~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t~L 110 (201)
T 3hra_A 40 NTPLNIA-VHNNDIE----IAKALIDRGADINLQNSISDS-PYLYAGAQGRTEILAYMLKH---ATPDLNKHNRYGGNAL 110 (201)
T ss_dssp CCHHHHH-HHHTCHH----HHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHH---SCCCTTCCCTTSCCSH
T ss_pred CCHHHHH-HHcCCHH----HHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhc---cCcccccccCCCCcHH
Confidence 3344333 4566654 444455556555432 222 33344566777665555432 22221110 111234
Q ss_pred HHHHhcCCHHHHHHHHHhc-cc---CChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCC
Q 040371 84 DMYSKCGKIQMAKEVFDTV-QR---NDVSVWNAMISGVAIHGL-AADASAIFTKMEMFNVLPD 141 (410)
Q Consensus 84 ~~y~~~g~~~~A~~~f~~m-~~---~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~ 141 (410)
...++.|+.+-+..+++.- .. +|..-++.+..+. ..++ ...-.++.+.+.+.|..|+
T Consensus 111 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~-~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 111 IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV-GLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHH-HSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHH-HhccchhhHHHHHHHHHHCCCCCC
Confidence 4456678887777777654 22 2333444444433 3333 3333555666666666554
No 337
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.41 E-value=3e+02 Score=24.20 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccC
Q 040371 79 SAALIDMYSKCGKIQMAKEVFDTVQRN 105 (410)
Q Consensus 79 ~~~li~~y~~~g~~~~A~~~f~~m~~~ 105 (410)
...++.=|...|++++|.+.++++..|
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 345667777777777777777777655
No 338
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=20.38 E-value=1.8e+02 Score=26.11 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=12.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccC
Q 040371 81 ALIDMYSKCGKIQMAKEVFDTVQRN 105 (410)
Q Consensus 81 ~li~~y~~~g~~~~A~~~f~~m~~~ 105 (410)
+++.=|...|++++|.+.++++..|
T Consensus 17 ~ii~EY~~~~D~~Ea~~~l~eL~~p 41 (364)
T 3l6a_A 17 TVVTEYLNSGNANEAVNGVREMRAP 41 (364)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCc
Confidence 4444444445555555555544443
No 339
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.35 E-value=1.6e+02 Score=18.07 Aligned_cols=40 Identities=10% Similarity=0.100 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--HHHHHHHHHhcccC
Q 040371 61 YWVHNLIIEKKIELNFILSAALIDMYSKCGK--IQMAKEVFDTVQRN 105 (410)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~--~~~A~~~f~~m~~~ 105 (410)
.+.++.++..|++++.. ..+..+.|. ++.|.+.+.+|.-|
T Consensus 10 ~qmlq~L~eMGFd~era-----e~Alk~Tg~~Gle~AmewL~k~~~~ 51 (54)
T 2cos_A 10 RQMLQELVNAGCDQEMA-----GRALKQTGSRSIEAALEYISKMSGP 51 (54)
T ss_dssp HHHHHHHHHHHCCHHHH-----HHHHHHHTSCCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHcCCCHHHH-----HHHHHHhCcccHHHHHHHHHHhcCC
Confidence 34556666667665422 223455555 77777777777544
No 340
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=20.30 E-value=2.5e+02 Score=20.26 Aligned_cols=67 Identities=10% Similarity=-0.058 Sum_probs=33.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCH
Q 040371 122 LAADASAIFTKMEMFNVLPDSITFLGLLTACSHCGLVEEGRKYFDHMRSRYSIQPQLEHYGAMVDLLGRAGHI 194 (410)
Q Consensus 122 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 194 (410)
.+.+|+.-+++.... .+|.....+++..+-.. ++.++++.....+..|+ .+.++...+....+.|-+
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI 69 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLL 69 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCC
Confidence 345566666665443 34555555555544332 45555555555444455 233444455555554433
No 341
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.20 E-value=93 Score=15.25 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=10.1
Q ss_pred cHHHHHHHHHHHHHHHH
Q 040371 299 EAQAIDKILGSLIQRTK 315 (410)
Q Consensus 299 ~~~~~~~~l~~l~~~m~ 315 (410)
..++.+..++.+.++++
T Consensus 2 nadelykeledlqerlr 18 (27)
T 3twe_A 2 NADELYKELEDLQERLR 18 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45666666666555554
Done!