Query 040374
Match_columns 139
No_of_seqs 89 out of 101
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 07:49:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040374.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040374hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 100.0 1.4E-39 3.1E-44 243.5 9.7 113 3-127 1-117 (118)
2 PF05617 Prolamin_like: Prolam 99.8 6.3E-20 1.4E-24 123.3 2.9 65 54-118 1-70 (70)
3 PF07172 GRP: Glycine rich pro 94.3 0.026 5.6E-07 41.0 1.7 28 3-31 1-28 (95)
4 PLN00214 putative protein; Pro 91.7 0.21 4.6E-06 37.9 3.3 46 53-102 37-86 (115)
5 PF10731 Anophelin: Thrombin i 50.3 13 0.00029 25.6 2.0 25 3-32 1-26 (65)
6 cd04660 nsLTP_like nsLTP_like: 43.4 9 0.00019 25.7 0.3 35 60-98 6-42 (73)
7 smart00499 AAI Plant lipid tra 39.8 13 0.00029 23.4 0.7 22 79-100 23-45 (79)
8 cd01960 nsLTP1 nsLTP1: Non-spe 38.3 24 0.00053 24.2 1.8 61 55-120 3-77 (89)
9 cd03727 SOCS_ASB8 SOCS (suppre 37.2 22 0.00048 22.6 1.4 32 81-116 7-39 (43)
10 cd00010 AAI_LTSS AAI_LTSS: Alp 31.4 38 0.00083 21.4 1.8 26 74-99 8-37 (63)
11 PF15284 PAGK: Phage-encoded v 20.7 1.2E+02 0.0025 20.8 2.7 19 5-23 4-22 (61)
No 1
>PLN00213 predicted protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=243.47 Aligned_cols=113 Identities=26% Similarity=0.508 Sum_probs=98.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhccccccCCCC--CCccccCCchhhhccCCCCchHHHHhhhcCcchHHHHHHHHHhCccc-
Q 040374 3 MALKHAFFILALTCLIMANIANATSRNDHL--NNNMKLGYNLATRLEASGSLTECWNALMELKSCSNEIIIFFLNGQAD- 79 (139)
Q Consensus 3 Ma~k~~~~~l~v~~~~~~~~~~a~~~~~~p--~p~p~~~~~l~~~l~~~~~~~~Cwssl~~v~gC~~EI~~~fl~G~~~- 79 (139)
|++|||++||+|+||+++| ||+ ++|++ +|+|||++. ++|.+|+.||||||++++||+.||.+++++||++
T Consensus 1 m~iknV~~ll~v~cIvvsV--na~-lpqf~~~fp~~~p~~~----~pg~pd~~kCwSSl~~vpGCv~EI~~si~~gkf~~ 73 (118)
T PLN00213 1 MSIKNVFLLLAVLCIIVSV--NAQ-LPQFPAQLPFLFPFQL----IPGLPDITKCFSSVMDIPGCIAEISQSIFTGKFGN 73 (118)
T ss_pred CchHHHHHHHHHHHHHhee--ccC-CCCCCCCCCCCCCccC----CCCCccHHHHHHHHcCCcchHHHHHHHHHhchhcc
Confidence 8999999999999999999 888 88886 566666655 5556699999999999999999999999999997
Q ss_pred cChhchHHHHhhhcCcccccccCCCCCcchhhhHhhhcccC-CCCCCCC
Q 040374 80 IGPDCCRAIDIITRNCWPTMLTSLGFTAEEGNILRGYCDAS-SAPSPGG 127 (139)
Q Consensus 80 IGp~CC~AI~~I~~~CWP~mfps~pF~p~e~~~LKg~C~~~-~~~sP~~ 127 (139)
||++|||||++.+ +|||+| |.+||+| ++||++|++. .+++|+|
T Consensus 74 Ig~aCCKAf~~~d-nCwP~~-P~~P~fP---p~LK~~Cs~i~~~~~~~~ 117 (118)
T PLN00213 74 LGPACCKAFLDAD-NCIPKI-PFIPFFP---PMLKEQCSRVAGATPPIP 117 (118)
T ss_pred cchHHHHHHHhhh-ccccCC-cCCCccc---hHHHHHHhcccCCCCCCC
Confidence 9999999999965 999995 9999888 7999999994 4445443
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.78 E-value=6.3e-20 Score=123.28 Aligned_cols=65 Identities=31% Similarity=0.755 Sum_probs=57.8
Q ss_pred HHHHhhhcCcchHHHHHHHHHhCcc-ccChhchHHHHhhhcCcccccccCCCCCcchhh----hHhhhcc
Q 040374 54 ECWNALMELKSCSNEIIIFFLNGQA-DIGPDCCRAIDIITRNCWPTMLTSLGFTAEEGN----ILRGYCD 118 (139)
Q Consensus 54 ~Cwssl~~v~gC~~EI~~~fl~G~~-~IGp~CC~AI~~I~~~CWP~mfps~pF~p~e~~----~LKg~C~ 118 (139)
|||++++++++|++||+.+|++|+. .||++||++|+.++++||+.|+...+++|++.+ .||++|+
T Consensus 1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C~~~l~~~~~~~p~~~~~~r~~l~~~C~ 70 (70)
T PF05617_consen 1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDCHPALFKMFPFTPFFKPLLRDLLWNHCS 70 (70)
T ss_pred ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhHHHHHHHHccCCCCccchhHHHHHhhcC
Confidence 6999999999999999999999995 499999999999999999996665566666667 9999996
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=94.28 E-value=0.026 Score=41.04 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhccccccCCC
Q 040374 3 MALKHAFFILALTCLIMANIANATSRNDH 31 (139)
Q Consensus 3 Ma~k~~~~~l~v~~~~~~~~~~a~~~~~~ 31 (139)
||+|+++|| .|++.++-.|++++++|++
T Consensus 1 MaSK~~llL-~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLL-GLLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhHHHHH-HHHHHHHHHHHhhhhhHHh
Confidence 888885533 2222222223344545655
No 4
>PLN00214 putative protein; Provisional
Probab=91.67 E-value=0.21 Score=37.92 Aligned_cols=46 Identities=20% Similarity=0.499 Sum_probs=34.3
Q ss_pred hHHHHhhhcCcchHHHHHHHHH-hCccccChhchHHHHhhhcCc---ccccccC
Q 040374 53 TECWNALMELKSCSNEIIIFFL-NGQADIGPDCCRAIDIITRNC---WPTMLTS 102 (139)
Q Consensus 53 ~~Cwssl~~v~gC~~EI~~~fl-~G~~~IGp~CC~AI~~I~~~C---WP~mfps 102 (139)
..|-.-+. +-|..||+..++ ||. ...+||+-+...+.+| |=+++..
T Consensus 37 ~~C~~Kmt--~KCa~EI~a~i~~N~t--~s~~CC~~LVk~GK~CH~~LiK~i~~ 86 (115)
T PLN00214 37 NTCLVKIT--PKCALDIIAVVFENGT--LIDPCCNDLVKEGKVCHDTLIKYIAD 86 (115)
T ss_pred HHHHhhcc--HhhHHHHHHHHHcCCC--CchHHHHHHHHHhhHHHHHHHHHHHc
Confidence 34544333 459999999988 555 5899999999999999 4455543
No 5
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=50.33 E-value=13 Score=25.59 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=14.1
Q ss_pred hhHHHHHH-HHHHHHHHHhhhccccccCCCC
Q 040374 3 MALKHAFF-ILALTCLIMANIANATSRNDHL 32 (139)
Q Consensus 3 Ma~k~~~~-~l~v~~~~~~~~~~a~~~~~~p 32 (139)
||.|.++. ||-+.+++ -+|+.||.-
T Consensus 1 MA~Kl~vialLC~aLva-----~vQ~APQYa 26 (65)
T PF10731_consen 1 MASKLIVIALLCVALVA-----IVQSAPQYA 26 (65)
T ss_pred CcchhhHHHHHHHHHHH-----HHhcCcccC
Confidence 77887653 33333333 367678775
No 6
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=43.44 E-value=9 Score=25.70 Aligned_cols=35 Identities=17% Similarity=0.381 Sum_probs=22.1
Q ss_pred hcCcchHHHHHHHHHhCc--cccChhchHHHHhhhcCcccc
Q 040374 60 MELKSCSNEIIIFFLNGQ--ADIGPDCCRAIDIITRNCWPT 98 (139)
Q Consensus 60 ~~v~gC~~EI~~~fl~G~--~~IGp~CC~AI~~I~~~CWP~ 98 (139)
..+..|.. ++..|. ..-+.+||.+|+.++..|.=.
T Consensus 6 ~~L~~C~~----yl~~~~~~~~Ps~~CC~~vk~~~~~C~C~ 42 (73)
T cd04660 6 DLLAECQP----YVTGPNPPPPPSRECCAALRRADLPCLCR 42 (73)
T ss_pred HHHHHHHH----HHcCCCCCCCCCHHHHHHHHcCCcCCEee
Confidence 34445653 334444 236788999999887777543
No 7
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=39.75 E-value=13 Score=23.37 Aligned_cols=22 Identities=18% Similarity=0.480 Sum_probs=17.3
Q ss_pred ccChhchHHHHhh-hcCcccccc
Q 040374 79 DIGPDCCRAIDII-TRNCWPTML 100 (139)
Q Consensus 79 ~IGp~CC~AI~~I-~~~CWP~mf 100 (139)
.-...||..++.+ ...|+=..+
T Consensus 23 ~p~~~CC~~l~~~~~~~C~C~~~ 45 (79)
T smart00499 23 PPSQQCCSQLRGLNSAQCRCLAL 45 (79)
T ss_pred CCchHHHHHHHHhcccCCcchhh
Confidence 3778999999999 888865433
No 8
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=38.28 E-value=24 Score=24.17 Aligned_cols=61 Identities=25% Similarity=0.589 Sum_probs=35.7
Q ss_pred HHHhhhcCcchHHHHHHHHHhCccc-cChhchHHHHhhhc------------CcccccccCC-CCCcchhhhHhhhcccC
Q 040374 55 CWNALMELKSCSNEIIIFFLNGQAD-IGPDCCRAIDIITR------------NCWPTMLTSL-GFTAEEGNILRGYCDAS 120 (139)
Q Consensus 55 Cwssl~~v~gC~~EI~~~fl~G~~~-IGp~CC~AI~~I~~------------~CWP~mfps~-pF~p~e~~~LKg~C~~~ 120 (139)
|=..+..+..|.. + ++|... -++.||.+++.+.. .|.-...... ++.+.-..-|=+.|.-.
T Consensus 3 C~~v~~~l~~C~~----y-~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~ 77 (89)
T cd01960 3 CGQVTSLLAPCLG----Y-LTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVS 77 (89)
T ss_pred HHHHHhhHHhHHH----H-HhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccC
Confidence 5556666667763 3 444444 88999999998653 2433333322 24455555666777553
No 9
>cd03727 SOCS_ASB8 SOCS (suppressors of cytokine signaling) box of ASB8-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. Human ASB8 is highly transcribed in skeletal muscle and in lung carcinoma cell lines. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=37.20 E-value=22 Score=22.60 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=22.0
Q ss_pred ChhchHHHHh-hhcCcccccccCCCCCcchhhhHhhh
Q 040374 81 GPDCCRAIDI-ITRNCWPTMLTSLGFTAEEGNILRGY 116 (139)
Q Consensus 81 Gp~CC~AI~~-I~~~CWP~mfps~pF~p~e~~~LKg~ 116 (139)
-.-|..||+. ++.+|.+...+.+|.++ .||+|
T Consensus 7 q~LcR~aiR~~lg~~~l~~aI~~LpLP~----sLK~Y 39 (43)
T cd03727 7 KALARYAVRRSLGVQYLPEAVKQLPLPR----SVKEY 39 (43)
T ss_pred HHHHHHHHHHHHhhhhHHhhcccCCCCH----HHHHH
Confidence 3458888884 45665566557777765 88887
No 10
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=31.40 E-value=38 Score=21.36 Aligned_cols=26 Identities=27% Similarity=0.672 Sum_probs=17.7
Q ss_pred HhCccc-cChhchHHHHhhhc---Cccccc
Q 040374 74 LNGQAD-IGPDCCRAIDIITR---NCWPTM 99 (139)
Q Consensus 74 l~G~~~-IGp~CC~AI~~I~~---~CWP~m 99 (139)
++|... -.+.||.+++.+.+ .|.=..
T Consensus 8 ~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~ 37 (63)
T cd00010 8 LTGGATAPPSDCCSGLKSVVKSDPKCLCAA 37 (63)
T ss_pred HcCCCCCCChHHHHHHHHHHhcChhhHHHH
Confidence 445534 88999999999864 554333
No 11
>PF15284 PAGK: Phage-encoded virulence factor
Probab=20.74 E-value=1.2e+02 Score=20.84 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 040374 5 LKHAFFILALTCLIMANIA 23 (139)
Q Consensus 5 ~k~~~~~l~v~~~~~~~~~ 23 (139)
+|++|+.|++++...+..+
T Consensus 4 ~ksifL~l~~~LsA~~FSa 22 (61)
T PF15284_consen 4 FKSIFLALVFILSAAGFSA 22 (61)
T ss_pred HHHHHHHHHHHHHHhhhhH
Confidence 7889988888777765433
Done!