Query 040374
Match_columns 139
No_of_seqs 89 out of 101
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 12:23:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bwo_A NS-LTP1, nonspecific li 17.1 76 0.0026 21.2 2.2 60 55-119 3-75 (90)
2 1afh_A Maize nonspecific lipid 14.0 74 0.0025 21.3 1.5 61 55-120 4-78 (93)
3 2ebo_A Ebola virus envelope gl 12.7 39 0.0013 22.6 -0.2 8 80-87 48-55 (74)
4 1n89_A Lipid transfer protein; 11.2 1.4E+02 0.0046 18.8 2.0 18 79-97 19-36 (67)
5 2ljo_A Non-specific lipid-tran 10.8 1.3E+02 0.0045 20.3 2.0 47 73-119 17-76 (93)
6 2alg_A Non-specific lipid tran 10.4 1.7E+02 0.0058 19.4 2.4 61 55-120 4-77 (92)
7 3c8l_A FTSZ-like protein of un 10.1 69 0.0024 23.5 0.3 27 80-106 22-49 (122)
8 1ebo_A Ebola virus envelope pr 9.9 56 0.0019 24.0 -0.2 7 80-86 85-91 (131)
9 1t12_A LTP 1, nonspecific lipi 9.9 1.2E+02 0.0042 20.2 1.5 60 55-120 4-76 (91)
10 1l6h_A LTP2, non-specific lipi 9.7 1.2E+02 0.0041 19.2 1.4 17 79-96 20-36 (69)
No 1
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=17.09 E-value=76 Score=21.15 Aligned_cols=60 Identities=13% Similarity=0.434 Sum_probs=36.5
Q ss_pred HHHhhhcCcchHHHHHHHHHhCccccChhchHHHHhhhc------------CcccccccCC-CCCcchhhhHhhhccc
Q 040374 55 CWNALMELKSCSNEIIIFFLNGQADIGPDCCRAIDIITR------------NCWPTMLTSL-GFTAEEGNILRGYCDA 119 (139)
Q Consensus 55 Cwssl~~v~gC~~EI~~~fl~G~~~IGp~CC~AI~~I~~------------~CWP~mfps~-pF~p~e~~~LKg~C~~ 119 (139)
|=+.+.++..|..-+ ..|. ...++||.+++.+.. .|.-....+. ++.+.-+.-|-+.|.-
T Consensus 3 C~~v~~~L~pCl~y~----~~~~-~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v 75 (90)
T 1bwo_A 3 CGHVDSLVRPCLSYV----QGGP-GPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGV 75 (90)
T ss_dssp HHHHHHHHGGGHHHH----TTCS-CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTC
T ss_pred HHHHHHhhcccHHHH----cCCC-CCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCC
Confidence 445556666676443 3333 378899999998752 4543333333 4566656677778865
No 2
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=14.01 E-value=74 Score=21.30 Aligned_cols=61 Identities=20% Similarity=0.495 Sum_probs=36.5
Q ss_pred HHHhhhcCcchHHHHHHHHHhCccc-cChhchHHHHhhh----------c--CcccccccCC-CCCcchhhhHhhhcccC
Q 040374 55 CWNALMELKSCSNEIIIFFLNGQAD-IGPDCCRAIDIIT----------R--NCWPTMLTSL-GFTAEEGNILRGYCDAS 120 (139)
Q Consensus 55 Cwssl~~v~gC~~EI~~~fl~G~~~-IGp~CC~AI~~I~----------~--~CWP~mfps~-pF~p~e~~~LKg~C~~~ 120 (139)
|=+.+..+..|..- ++|... -.++||.+++.+. . .|.-...... +..+.-+.-|-+.|.-.
T Consensus 4 C~~v~~~L~pCl~y-----~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v~ 78 (93)
T 1afh_A 4 CGQVASAIAPCISY-----ARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVS 78 (93)
T ss_dssp SHHHHHHHGGGHHH-----HTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHCC
T ss_pred hHHHHHhccCcHHH-----HcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCCC
Confidence 44555556666633 344434 6778999999985 2 3443222222 46666667788888663
No 3
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=12.71 E-value=39 Score=22.61 Aligned_cols=8 Identities=50% Similarity=1.302 Sum_probs=6.7
Q ss_pred cChhchHH
Q 040374 80 IGPDCCRA 87 (139)
Q Consensus 80 IGp~CC~A 87 (139)
+||+||-.
T Consensus 48 lgpdc~i~ 55 (74)
T 2ebo_A 48 LGPDCAIE 55 (74)
T ss_dssp HGGGGGCC
T ss_pred cCCccccC
Confidence 99999953
No 4
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=11.16 E-value=1.4e+02 Score=18.81 Aligned_cols=18 Identities=17% Similarity=0.645 Sum_probs=14.2
Q ss_pred ccChhchHHHHhhhcCccc
Q 040374 79 DIGPDCCRAIDIITRNCWP 97 (139)
Q Consensus 79 ~IGp~CC~AI~~I~~~CWP 97 (139)
...++||.+++.. ..|.=
T Consensus 19 ~Ps~~CC~~lk~~-~~ClC 36 (67)
T 1n89_A 19 KPSGECCGNLRAQ-QGCFC 36 (67)
T ss_dssp CCCHHHHHHHHHH-SSHHH
T ss_pred CCCHHHHHhhCCC-CCCCC
Confidence 4889999999975 67743
No 5
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=10.84 E-value=1.3e+02 Score=20.28 Aligned_cols=47 Identities=17% Similarity=0.455 Sum_probs=27.3
Q ss_pred HHhCccccChhchHHHHhhhc--------Cc----cccc-ccCCCCCcchhhhHhhhccc
Q 040374 73 FLNGQADIGPDCCRAIDIITR--------NC----WPTM-LTSLGFTAEEGNILRGYCDA 119 (139)
Q Consensus 73 fl~G~~~IGp~CC~AI~~I~~--------~C----WP~m-fps~pF~p~e~~~LKg~C~~ 119 (139)
|+.|.....+.||..++.+.. +| .-.. -...++...-+.-|=+.|.-
T Consensus 17 Yv~g~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP~~CgV 76 (93)
T 2ljo_A 17 YLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGV 76 (93)
T ss_dssp HHTTSSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHHHHHTC
T ss_pred HHcCCCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhhHhcCC
Confidence 345544588999999988742 22 2111 11234555556667777854
No 6
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=10.38 E-value=1.7e+02 Score=19.41 Aligned_cols=61 Identities=26% Similarity=0.591 Sum_probs=37.8
Q ss_pred HHHhhhcCcchHHHHHHHHHhCccccChhchHHHHhhh-------c-----CcccccccCC-CCCcchhhhHhhhcccC
Q 040374 55 CWNALMELKSCSNEIIIFFLNGQADIGPDCCRAIDIIT-------R-----NCWPTMLTSL-GFTAEEGNILRGYCDAS 120 (139)
Q Consensus 55 Cwssl~~v~gC~~EI~~~fl~G~~~IGp~CC~AI~~I~-------~-----~CWP~mfps~-pF~p~e~~~LKg~C~~~ 120 (139)
|=..+.++..|..-+ ..|. ...++||.+++.+. | .|.-...++. ++.+.-+.-|-+.|.-.
T Consensus 4 C~~v~~~L~pCl~y~----~~~~-~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv~ 77 (92)
T 2alg_A 4 CGQVSSSLAPCIPYV----RGGG-AVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVS 77 (92)
T ss_dssp HHHHHHHHGGGHHHH----HHCS-CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTCC
T ss_pred hHHHHHhccCcHHHH----cCCC-CCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCCC
Confidence 555566667777544 3332 47789999999975 3 3443322332 56666667777888653
No 7
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=10.09 E-value=69 Score=23.46 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=21.6
Q ss_pred cChhchHHHH-hhhcCcccccccCCCCC
Q 040374 80 IGPDCCRAID-IITRNCWPTMLTSLGFT 106 (139)
Q Consensus 80 IGp~CC~AI~-~I~~~CWP~mfps~pF~ 106 (139)
.-+++.+|++ .|.++|.|.++...|+.
T Consensus 22 ~TkAA~RAvrDAI~~nslp~~~~~~g~~ 49 (122)
T 3c8l_A 22 PTIAASRAVRNAIAHNALPGVWEVAGLS 49 (122)
T ss_dssp HHHHHHHHHHHHHTTCCCSSHHHHHTCS
T ss_pred HHHHHHHHHHHHHhhhcchhHHHHCCCC
Confidence 4466788887 78899999999887774
No 8
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=9.92 E-value=56 Score=23.97 Aligned_cols=7 Identities=57% Similarity=1.360 Sum_probs=6.3
Q ss_pred cChhchH
Q 040374 80 IGPDCCR 86 (139)
Q Consensus 80 IGp~CC~ 86 (139)
+||+||-
T Consensus 85 LGPdCcI 91 (131)
T 1ebo_A 85 LGPDCRI 91 (131)
T ss_dssp HGGGGGC
T ss_pred cCCcccc
Confidence 9999994
No 9
>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}
Probab=9.86 E-value=1.2e+02 Score=20.17 Aligned_cols=60 Identities=18% Similarity=0.486 Sum_probs=36.4
Q ss_pred HHHhhhcCcchHHHHHHHHHhCccccChhchHHHHhhhc------------CcccccccCC-CCCcchhhhHhhhcccC
Q 040374 55 CWNALMELKSCSNEIIIFFLNGQADIGPDCCRAIDIITR------------NCWPTMLTSL-GFTAEEGNILRGYCDAS 120 (139)
Q Consensus 55 Cwssl~~v~gC~~EI~~~fl~G~~~IGp~CC~AI~~I~~------------~CWP~mfps~-pF~p~e~~~LKg~C~~~ 120 (139)
|=+.+..+..|..-+ ..|.. -. +||.+++.+.. .|.-....+. +..+.-+.-|=+.|.-.
T Consensus 4 C~~v~~~L~pCl~y~----~~~~~-P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~ 76 (91)
T 1t12_A 4 CGQVTSNLAPCLAYL----RNTGP-LG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVN 76 (91)
T ss_dssp HHHHHHHTHHHHHHH----TTSSC-CT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTCC
T ss_pred hHHHHHhccCcHHHH----cCCCC-hH-HHHHHHHHHHhhccCCCCCCccCCCccccccccCCcChhHHHHHHHHcCCC
Confidence 555556666676433 33333 44 89999998754 4553322222 56676677788888663
No 10
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=9.74 E-value=1.2e+02 Score=19.17 Aligned_cols=17 Identities=18% Similarity=0.720 Sum_probs=13.6
Q ss_pred ccChhchHHHHhhhcCcc
Q 040374 79 DIGPDCCRAIDIITRNCW 96 (139)
Q Consensus 79 ~IGp~CC~AI~~I~~~CW 96 (139)
...++||.+++.. ..|.
T Consensus 20 ~Ps~~CC~~lk~~-~~Cl 36 (69)
T 1l6h_A 20 RPTAACCSSLRAQ-QGCF 36 (69)
T ss_dssp STTHHHHHHHHHH-HHHH
T ss_pred CCCHHHHHhhCCC-CCCC
Confidence 4889999999975 5674
Done!