Query 040374
Match_columns 139
No_of_seqs 89 out of 101
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 12:23:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040374.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040374hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fk5a_ a.52.1.1 (A:) Plant no 27.7 13 0.00097 23.5 1.8 61 55-120 4-78 (93)
2 d1mida_ a.52.1.1 (A:) Plant no 23.5 18 0.0013 22.8 1.8 61 55-120 3-76 (91)
3 d1hssa_ a.52.1.2 (A:) 0.19 alp 11.2 47 0.0034 22.5 1.6 34 62-96 13-49 (120)
4 d1ppjd2 f.23.11.1 (D:196-241) 10.7 98 0.0071 17.4 2.7 17 3-19 9-25 (46)
5 d1k8rb_ d.15.1.5 (B:) Protein 8.8 64 0.0047 21.0 1.4 17 59-75 14-30 (95)
6 d2cora2 g.39.1.3 (A:8-42) Pinc 8.6 43 0.0031 18.3 0.4 27 80-107 6-32 (35)
7 d3cx5d2 f.23.11.1 (D:261-307) 6.8 1.8E+02 0.013 16.4 2.7 16 3-18 9-24 (47)
8 d2bwba1 a.5.2.1 (A:328-371) DS 6.6 1.6E+02 0.012 16.3 2.3 29 48-76 16-44 (44)
9 d2apob1 g.41.16.1 (B:403-457) 6.0 1.1E+02 0.0078 18.0 1.4 25 113-137 15-39 (55)
10 d1gvda_ a.4.1.3 (A:) c-Myb, DN 5.5 85 0.0062 17.4 0.6 17 103-119 4-20 (52)
No 1
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}
Probab=27.67 E-value=13 Score=23.54 Aligned_cols=61 Identities=20% Similarity=0.494 Sum_probs=37.1
Q ss_pred HHHhhhcCcchHHHHHHHHHhCccc-cChhchHHHHhhhc------------Cccccccc-CCCCCcchhhhHhhhcccC
Q 040374 55 CWNALMELKSCSNEIIIFFLNGQAD-IGPDCCRAIDIITR------------NCWPTMLT-SLGFTAEEGNILRGYCDAS 120 (139)
Q Consensus 55 Cwssl~~v~gC~~EI~~~fl~G~~~-IGp~CC~AI~~I~~------------~CWP~mfp-s~pF~p~e~~~LKg~C~~~ 120 (139)
|=+.+.++-.|. .|++|... -++.||.+++.+.+ +|.-.... ..|+.+.-..-|=..|.-.
T Consensus 4 C~~v~~~l~pCl-----~Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~ 78 (93)
T d1fk5a_ 4 CGQVASAIAPCI-----SYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVS 78 (93)
T ss_dssp HHHHHHHHGGGH-----HHHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhhhH-----HHHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCCC
Confidence 555555666665 34566655 78999999998763 23322222 2356666666677788653
No 2
>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=23.54 E-value=18 Score=22.82 Aligned_cols=61 Identities=15% Similarity=0.481 Sum_probs=36.2
Q ss_pred HHHhhhcCcchHHHHHHHHHhCccccChhchHHHHhhhc------------CcccccccC-CCCCcchhhhHhhhcccC
Q 040374 55 CWNALMELKSCSNEIIIFFLNGQADIGPDCCRAIDIITR------------NCWPTMLTS-LGFTAEEGNILRGYCDAS 120 (139)
Q Consensus 55 Cwssl~~v~gC~~EI~~~fl~G~~~IGp~CC~AI~~I~~------------~CWP~mfps-~pF~p~e~~~LKg~C~~~ 120 (139)
|=+.+..+-.|.. |++|.....+.||.+++.+.. +|.-..-.. .+....-..-|=+.|.-.
T Consensus 3 C~~v~~~l~pCl~-----Yl~g~~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~ 76 (91)
T d1mida_ 3 CGQVDSKMKPCLT-----YVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVN 76 (91)
T ss_dssp HHHHHHHHGGGHH-----HHTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhHH-----HHcCCCCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCCC
Confidence 5555556666652 355655599999999988753 233322211 234555566677778653
No 3
>d1hssa_ a.52.1.2 (A:) 0.19 alpha-amylase inhibitor {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=11.20 E-value=47 Score=22.53 Aligned_cols=34 Identities=26% Similarity=0.591 Sum_probs=22.9
Q ss_pred CcchHHHHHHHHHhCcc-c--cChhchHHHHhhhcCcc
Q 040374 62 LKSCSNEIIIFFLNGQA-D--IGPDCCRAIDIITRNCW 96 (139)
Q Consensus 62 v~gC~~EI~~~fl~G~~-~--IGp~CC~AI~~I~~~CW 96 (139)
+++|-..+.+- ..|.. . +-..||+-+..|.+.|+
T Consensus 13 L~~CR~yv~~q-~~G~~~~~~~k~~CC~eLa~i~~~CR 49 (120)
T d1hssa_ 13 LPACRPLLRLQ-CNGSQVPEAVLRDCCQQLAHISEWCR 49 (120)
T ss_dssp CTTHHHHHHHH-TTTCCCCHHHHHHHHHHHHTSCTTTH
T ss_pred cHHHHHHHHHH-hcCCCCcchHHHHHHHHHHhcCcccc
Confidence 44577666544 33332 2 66889999999998886
No 4
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.67 E-value=98 Score=17.38 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHH
Q 040374 3 MALKHAFFILALTCLIM 19 (139)
Q Consensus 3 Ma~k~~~~~l~v~~~~~ 19 (139)
|++|.++++..++.+..
T Consensus 9 mG~Kv~~~l~~l~~l~y 25 (46)
T d1ppjd2 9 MGLKMLLMMGLLLPLVY 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77888776666655543
No 5
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=8.82 E-value=64 Score=21.00 Aligned_cols=17 Identities=6% Similarity=0.096 Sum_probs=13.0
Q ss_pred hhcCcchHHHHHHHHHh
Q 040374 59 LMELKSCSNEIIIFFLN 75 (139)
Q Consensus 59 l~~v~gC~~EI~~~fl~ 75 (139)
..++.||.+||+.-+|.
T Consensus 14 ~vni~gC~~ai~~~~Lk 30 (95)
T d1k8rb_ 14 AVQSRGDYQKTLAIALK 30 (95)
T ss_dssp EEECCSCHHHHHHHHHH
T ss_pred EEEeccCHHHHHHHHHH
Confidence 57899999998765443
No 6
>d2cora2 g.39.1.3 (A:8-42) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.58 E-value=43 Score=18.30 Aligned_cols=27 Identities=15% Similarity=0.354 Sum_probs=21.4
Q ss_pred cChhchHHHHhhhcCcccccccCCCCCc
Q 040374 80 IGPDCCRAIDIITRNCWPTMLTSLGFTA 107 (139)
Q Consensus 80 IGp~CC~AI~~I~~~CWP~mfps~pF~p 107 (139)
+|+.=|+--..|.|+ -|.+|-+.+|.|
T Consensus 6 lGk~vC~KCh~iIdd-~pL~Fr~d~YHp 32 (35)
T d2cora2 6 LGKYICQKCHAIIDE-QPLIFKNDPYHP 32 (35)
T ss_dssp CCCCBCTTTCCBCCS-CCCCCSSSCCCT
T ss_pred hhhHHHHHHHhhhhc-CcceecCCCCCC
Confidence 677767666666667 899999999987
No 7
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.81 E-value=1.8e+02 Score=16.41 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHHH
Q 040374 3 MALKHAFFILALTCLI 18 (139)
Q Consensus 3 Ma~k~~~~~l~v~~~~ 18 (139)
|++|.++.+..++.+.
T Consensus 9 mg~K~~~i~s~l~~~~ 24 (47)
T d3cx5d2 9 LGLKTVIILSSLYLLS 24 (47)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777777555554444
No 8
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.57 E-value=1.6e+02 Score=16.27 Aligned_cols=29 Identities=17% Similarity=0.046 Sum_probs=24.4
Q ss_pred CCCCchHHHHhhhcCcchHHHHHHHHHhC
Q 040374 48 ASGSLTECWNALMELKSCSNEIIIFFLNG 76 (139)
Q Consensus 48 ~~~~~~~Cwssl~~v~gC~~EI~~~fl~G 76 (139)
|..|...|..+|....|-+..-+..+++|
T Consensus 16 GF~d~~~Ni~AL~~t~GdV~~Aie~Ll~g 44 (44)
T d2bwba1 16 GFFDFDRNVAALRRSGGSVQGALDSLLNG 44 (44)
T ss_dssp TCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHhCc
Confidence 45578889999999999998888888876
No 9
>d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=6.02 E-value=1.1e+02 Score=17.99 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=16.5
Q ss_pred HhhhcccCCCCCCCCCCccccCCCC
Q 040374 113 LRGYCDASSAPSPGGPAVIYQPQTD 137 (139)
Q Consensus 113 LKg~C~~~~~~sP~~~~~~~~~~~~ 137 (139)
|++.|-.-+..+-++.|.-|-|.|.
T Consensus 15 L~~~CP~CG~~t~~a~P~rfSPeDk 39 (55)
T d2apob1 15 LKEICPKCGEKTVIPKPPKFSLEDR 39 (55)
T ss_dssp SSSBCSSSCSBCBCCCCCCCCTTCT
T ss_pred ccccCcCCCCccCccCCCCCCCCcc
Confidence 5777776455555666777777664
No 10
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.52 E-value=85 Score=17.39 Aligned_cols=17 Identities=24% Similarity=0.126 Sum_probs=13.6
Q ss_pred CCCCcchhhhHhhhccc
Q 040374 103 LGFTAEEGNILRGYCDA 119 (139)
Q Consensus 103 ~pF~p~e~~~LKg~C~~ 119 (139)
-||++||...|+..-..
T Consensus 4 g~WT~eED~~L~~~v~~ 20 (52)
T d1gvda_ 4 GPWTKEEDQRLIKLVQK 20 (52)
T ss_dssp CSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 37899999999987554
Done!