Query 040376
Match_columns 100
No_of_seqs 190 out of 1357
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 07:50:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040376.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040376hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1064 AdhP Zn-dependent alco 99.9 8.3E-26 1.8E-30 151.9 10.9 86 5-96 2-87 (339)
2 KOG0023 Alcohol dehydrogenase, 99.9 1.1E-22 2.4E-27 135.0 9.5 90 2-95 5-94 (360)
3 COG1062 AdhC Zn-dependent alco 99.9 9.6E-23 2.1E-27 136.2 9.1 87 6-99 2-88 (366)
4 COG0604 Qor NADPH:quinone redu 99.9 5.3E-22 1.1E-26 134.1 10.6 89 7-98 1-89 (326)
5 KOG1197 Predicted quinone oxid 99.9 2.1E-21 4.5E-26 125.9 9.2 91 4-98 6-96 (336)
6 KOG0022 Alcohol dehydrogenase, 99.9 2.1E-21 4.5E-26 128.7 8.0 89 5-99 6-94 (375)
7 TIGR03451 mycoS_dep_FDH mycoth 99.8 5.4E-20 1.2E-24 125.1 10.3 84 6-96 1-84 (358)
8 PLN02740 Alcohol dehydrogenase 99.8 6E-20 1.3E-24 125.9 10.6 88 5-97 9-96 (381)
9 cd08230 glucose_DH Glucose deh 99.8 5E-20 1.1E-24 125.1 9.8 87 7-97 1-87 (355)
10 TIGR02819 fdhA_non_GSH formald 99.8 6.4E-20 1.4E-24 126.6 10.2 82 7-96 3-91 (393)
11 cd08281 liver_ADH_like1 Zinc-d 99.8 8.6E-20 1.9E-24 124.7 9.5 87 7-97 1-92 (371)
12 cd08301 alcohol_DH_plants Plan 99.8 1.6E-19 3.5E-24 123.2 10.1 86 6-97 2-87 (369)
13 KOG0024 Sorbitol dehydrogenase 99.8 4.1E-20 9E-25 122.9 6.7 88 5-96 3-91 (354)
14 PF08240 ADH_N: Alcohol dehydr 99.8 1.3E-19 2.8E-24 105.2 8.1 62 34-97 1-62 (109)
15 TIGR02818 adh_III_F_hyde S-(hy 99.8 3.4E-19 7.4E-24 121.8 10.4 85 7-97 2-86 (368)
16 cd08300 alcohol_DH_class_III c 99.8 5.9E-19 1.3E-23 120.5 10.3 86 6-97 2-87 (368)
17 TIGR01202 bchC 2-desacetyl-2-h 99.8 7.3E-19 1.6E-23 117.7 10.4 86 6-96 1-87 (308)
18 cd08291 ETR_like_1 2-enoyl thi 99.8 2.4E-18 5.2E-23 115.5 10.1 89 7-97 1-92 (324)
19 cd08239 THR_DH_like L-threonin 99.8 3.5E-18 7.5E-23 115.2 10.2 85 7-97 1-85 (339)
20 PLN02827 Alcohol dehydrogenase 99.8 3.3E-18 7.2E-23 117.4 10.2 83 6-97 12-94 (378)
21 PLN02586 probable cinnamyl alc 99.8 2.8E-18 6.1E-23 117.1 9.6 86 7-96 11-96 (360)
22 KOG0025 Zn2+-binding dehydroge 99.8 3.1E-18 6.7E-23 112.7 8.8 92 4-97 17-108 (354)
23 cd08277 liver_alcohol_DH_like 99.8 6.5E-18 1.4E-22 115.3 10.3 85 6-97 2-86 (365)
24 TIGR02822 adh_fam_2 zinc-bindi 99.8 9.6E-18 2.1E-22 113.2 10.0 84 10-96 2-86 (329)
25 PLN02514 cinnamyl-alcohol dehy 99.8 1.1E-17 2.5E-22 113.9 10.3 85 6-96 9-93 (357)
26 PRK09880 L-idonate 5-dehydroge 99.8 1.3E-17 2.9E-22 112.9 10.1 83 6-96 4-87 (343)
27 cd08292 ETR_like_2 2-enoyl thi 99.7 1.7E-17 3.7E-22 110.7 10.1 89 7-97 1-89 (324)
28 PLN02178 cinnamyl-alcohol dehy 99.7 1.7E-17 3.8E-22 113.9 10.3 86 7-96 5-90 (375)
29 cd08238 sorbose_phosphate_red 99.7 2.6E-17 5.7E-22 113.9 9.9 87 7-97 3-94 (410)
30 TIGR02817 adh_fam_1 zinc-bindi 99.7 3.1E-17 6.8E-22 110.1 9.9 86 8-97 1-89 (336)
31 cd08237 ribitol-5-phosphate_DH 99.7 2.6E-17 5.7E-22 111.5 9.2 83 8-97 4-87 (341)
32 cd05284 arabinose_DH_like D-ar 99.7 8.6E-17 1.9E-21 108.2 10.3 88 7-97 1-88 (340)
33 cd08290 ETR 2-enoyl thioester 99.7 8.8E-17 1.9E-21 108.2 10.0 92 7-98 1-95 (341)
34 cd08278 benzyl_alcohol_DH Benz 99.7 1.1E-16 2.5E-21 109.2 9.7 84 6-96 2-85 (365)
35 PRK05396 tdh L-threonine 3-deh 99.7 1.7E-16 3.6E-21 107.1 10.3 88 7-97 1-88 (341)
36 cd08231 MDR_TM0436_like Hypoth 99.7 1.4E-16 3.1E-21 108.2 10.0 84 8-97 2-91 (361)
37 PRK10309 galactitol-1-phosphat 99.7 1.7E-16 3.6E-21 107.5 10.3 83 7-97 1-84 (347)
38 PRK10754 quinone oxidoreductas 99.7 1.9E-16 4E-21 106.1 10.1 88 6-97 1-88 (327)
39 cd08299 alcohol_DH_class_I_II_ 99.7 1.7E-16 3.6E-21 108.8 10.1 85 6-97 7-91 (373)
40 PRK10083 putative oxidoreducta 99.7 1.9E-16 4E-21 106.7 10.0 82 7-95 1-82 (339)
41 cd08296 CAD_like Cinnamyl alco 99.7 2.5E-16 5.4E-21 106.1 10.5 84 7-96 1-84 (333)
42 COG1063 Tdh Threonine dehydrog 99.7 1.2E-16 2.6E-21 109.0 8.9 84 7-97 1-85 (350)
43 cd08233 butanediol_DH_like (2R 99.7 1.9E-16 4.1E-21 107.3 9.7 86 7-96 1-94 (351)
44 cd08250 Mgc45594_like Mgc45594 99.7 4E-16 8.6E-21 104.5 11.1 90 6-98 1-92 (329)
45 cd08293 PTGR2 Prostaglandin re 99.7 1.7E-16 3.7E-21 107.1 9.2 79 19-97 20-99 (345)
46 cd08285 NADP_ADH NADP(H)-depen 99.7 3.4E-16 7.4E-21 106.0 10.2 84 7-97 1-84 (351)
47 cd08259 Zn_ADH5 Alcohol dehydr 99.7 4.3E-16 9.3E-21 104.1 10.5 86 7-98 1-86 (332)
48 PTZ00354 alcohol dehydrogenase 99.7 6.6E-16 1.4E-20 103.3 11.4 90 6-98 1-90 (334)
49 cd08283 FDH_like_1 Glutathione 99.7 4E-16 8.8E-21 107.3 10.2 84 7-97 1-85 (386)
50 cd08244 MDR_enoyl_red Possible 99.7 9.2E-16 2E-20 102.3 11.0 91 7-98 1-91 (324)
51 cd08279 Zn_ADH_class_III Class 99.7 5.4E-16 1.2E-20 105.7 10.0 84 7-97 1-84 (363)
52 PRK13771 putative alcohol dehy 99.7 7.3E-16 1.6E-20 103.5 10.4 85 7-97 1-85 (334)
53 cd05278 FDH_like Formaldehyde 99.7 7.4E-16 1.6E-20 103.9 10.2 83 7-96 1-84 (347)
54 cd05280 MDR_yhdh_yhfp Yhdh and 99.7 1E-15 2.2E-20 102.2 10.5 86 7-97 1-86 (325)
55 cd08240 6_hydroxyhexanoate_dh_ 99.7 8.5E-16 1.8E-20 104.0 10.2 88 7-97 1-97 (350)
56 TIGR03201 dearomat_had 6-hydro 99.7 5.7E-16 1.2E-20 105.2 9.3 81 10-96 2-82 (349)
57 cd08260 Zn_ADH6 Alcohol dehydr 99.7 1.3E-15 2.9E-20 102.8 10.4 84 7-96 1-84 (345)
58 cd08274 MDR9 Medium chain dehy 99.7 1.2E-15 2.7E-20 102.9 10.2 90 7-97 1-108 (350)
59 cd08248 RTN4I1 Human Reticulon 99.7 9.3E-16 2E-20 103.5 9.6 91 7-97 1-104 (350)
60 cd08273 MDR8 Medium chain dehy 99.7 1.9E-15 4.1E-20 101.2 10.9 88 8-98 2-89 (331)
61 cd08286 FDH_like_ADH2 formalde 99.7 1.2E-15 2.5E-20 103.1 9.9 84 7-97 1-85 (345)
62 cd08256 Zn_ADH2 Alcohol dehydr 99.7 1.2E-15 2.7E-20 103.3 10.1 86 7-96 1-94 (350)
63 cd08258 Zn_ADH4 Alcohol dehydr 99.7 1.7E-15 3.6E-20 101.3 10.5 86 7-97 1-86 (306)
64 PRK09422 ethanol-active dehydr 99.7 1.6E-15 3.5E-20 102.0 10.3 83 7-96 1-83 (338)
65 cd08282 PFDH_like Pseudomonas 99.7 1.7E-15 3.6E-20 103.8 10.3 82 7-96 1-83 (375)
66 cd08263 Zn_ADH10 Alcohol dehyd 99.7 1.5E-15 3.2E-20 103.6 9.9 84 7-97 1-87 (367)
67 cd08297 CAD3 Cinnamyl alcohol 99.6 2E-15 4.4E-20 101.7 10.3 87 7-97 1-87 (341)
68 TIGR01751 crot-CoA-red crotony 99.6 1.5E-15 3.2E-20 104.8 9.7 96 3-98 4-109 (398)
69 cd08276 MDR7 Medium chain dehy 99.6 3.6E-15 7.8E-20 99.7 11.2 89 7-98 1-89 (336)
70 cd08261 Zn_ADH7 Alcohol dehydr 99.6 2.2E-15 4.8E-20 101.5 10.1 83 7-96 1-83 (337)
71 cd08249 enoyl_reductase_like e 99.6 8.3E-16 1.8E-20 103.9 8.0 86 7-98 1-86 (339)
72 cd08235 iditol_2_DH_like L-idi 99.6 2.3E-15 5E-20 101.4 10.1 84 7-97 1-84 (343)
73 cd08266 Zn_ADH_like1 Alcohol d 99.6 3.2E-15 7E-20 99.8 10.6 88 7-97 1-88 (342)
74 cd08272 MDR6 Medium chain dehy 99.6 3.8E-15 8.2E-20 98.9 10.9 89 7-98 1-89 (326)
75 cd08287 FDH_like_ADH3 formalde 99.6 1.9E-15 4E-20 102.0 9.5 82 7-96 1-83 (345)
76 cd08262 Zn_ADH8 Alcohol dehydr 99.6 2.8E-15 6E-20 101.1 10.0 86 7-97 1-95 (341)
77 cd05276 p53_inducible_oxidored 99.6 4.8E-15 1E-19 98.0 10.9 89 7-98 1-89 (323)
78 cd08288 MDR_yhdh Yhdh putative 99.6 4.3E-15 9.3E-20 99.3 10.7 86 7-97 1-86 (324)
79 cd08234 threonine_DH_like L-th 99.6 3.7E-15 8E-20 100.1 10.3 82 7-96 1-82 (334)
80 cd05283 CAD1 Cinnamyl alcohol 99.6 2.7E-15 5.9E-20 101.2 9.5 82 8-95 1-82 (337)
81 cd05279 Zn_ADH1 Liver alcohol 99.6 2.9E-15 6.2E-20 102.3 9.7 83 8-97 2-84 (365)
82 cd08270 MDR4 Medium chain dehy 99.6 4.8E-15 1E-19 98.2 10.4 83 7-98 1-83 (305)
83 TIGR02823 oxido_YhdH putative 99.6 5.1E-15 1.1E-19 99.0 10.5 85 8-97 1-85 (323)
84 cd08253 zeta_crystallin Zeta-c 99.6 4.6E-15 9.9E-20 98.3 10.2 89 7-98 1-89 (325)
85 cd08236 sugar_DH NAD(P)-depend 99.6 3.9E-15 8.5E-20 100.4 9.9 83 7-97 1-83 (343)
86 cd08254 hydroxyacyl_CoA_DH 6-h 99.6 5.7E-15 1.2E-19 99.0 10.3 86 7-96 1-86 (338)
87 cd05281 TDH Threonine dehydrog 99.6 5.7E-15 1.2E-19 99.8 10.3 88 7-97 1-88 (341)
88 PLN02702 L-idonate 5-dehydroge 99.6 7.6E-15 1.6E-19 100.0 10.9 77 20-96 27-103 (364)
89 cd08264 Zn_ADH_like2 Alcohol d 99.6 7.6E-15 1.6E-19 98.3 10.7 85 7-97 1-85 (325)
90 cd08252 AL_MDR Arginate lyase 99.6 6.2E-15 1.4E-19 98.9 10.2 87 7-97 1-90 (336)
91 cd08298 CAD2 Cinnamyl alcohol 99.6 7.9E-15 1.7E-19 98.3 10.5 87 7-96 1-88 (329)
92 cd08271 MDR5 Medium chain dehy 99.6 9.2E-15 2E-19 97.2 10.6 87 7-97 1-87 (325)
93 cd08284 FDH_like_2 Glutathione 99.6 6.7E-15 1.4E-19 99.2 9.5 83 7-97 1-84 (344)
94 cd05289 MDR_like_2 alcohol deh 99.6 1.3E-14 2.7E-19 95.7 10.3 91 7-98 1-91 (309)
95 cd08294 leukotriene_B4_DH_like 99.6 8.1E-15 1.8E-19 98.1 9.4 83 6-97 2-87 (329)
96 cd08246 crotonyl_coA_red croto 99.6 8.8E-15 1.9E-19 100.6 9.7 95 4-98 10-113 (393)
97 cd08289 MDR_yhfp_like Yhfp put 99.6 1.3E-14 2.8E-19 97.0 10.2 86 7-97 1-86 (326)
98 cd08295 double_bond_reductase_ 99.6 1.1E-14 2.4E-19 98.3 9.3 88 6-97 7-100 (338)
99 cd08245 CAD Cinnamyl alcohol d 99.6 2.1E-14 4.5E-19 96.4 10.0 82 8-95 1-82 (330)
100 cd08242 MDR_like Medium chain 99.6 1.8E-14 4E-19 96.3 9.6 77 7-96 1-77 (319)
101 cd08268 MDR2 Medium chain dehy 99.6 2.5E-14 5.5E-19 94.9 10.0 88 7-97 1-88 (328)
102 TIGR00692 tdh L-threonine 3-de 99.6 2.1E-14 4.5E-19 97.0 9.4 75 22-96 11-85 (340)
103 cd08243 quinone_oxidoreductase 99.6 4.4E-14 9.6E-19 93.8 10.7 86 7-98 1-86 (320)
104 cd08247 AST1_like AST1 is a cy 99.6 4E-14 8.7E-19 95.9 9.8 89 7-98 1-91 (352)
105 PLN03154 putative allyl alcoho 99.5 9.1E-14 2E-18 94.6 10.8 89 6-97 8-105 (348)
106 cd08232 idonate-5-DH L-idonate 99.5 5.5E-14 1.2E-18 94.7 9.5 76 20-96 7-83 (339)
107 TIGR02824 quinone_pig3 putativ 99.5 1.4E-13 3E-18 91.3 10.7 89 7-98 1-89 (325)
108 cd05282 ETR_like 2-enoyl thioe 99.5 9.1E-14 2E-18 92.7 9.7 84 13-98 4-88 (323)
109 TIGR02825 B4_12hDH leukotriene 99.5 7.5E-14 1.6E-18 93.8 9.1 69 20-97 17-85 (325)
110 cd05285 sorbitol_DH Sorbitol d 99.5 1.1E-13 2.4E-18 93.6 9.7 77 20-96 8-84 (343)
111 cd08275 MDR3 Medium chain dehy 99.5 2.4E-13 5.1E-18 90.9 11.0 88 8-98 1-88 (337)
112 cd08265 Zn_ADH3 Alcohol dehydr 99.5 2E-13 4.4E-18 93.8 10.9 75 22-96 39-117 (384)
113 cd05286 QOR2 Quinone oxidoredu 99.5 3.9E-13 8.5E-18 88.7 10.6 85 8-97 1-85 (320)
114 cd05288 PGDH Prostaglandin deh 99.5 3.7E-13 8E-18 90.1 10.0 89 7-97 2-93 (329)
115 cd08269 Zn_ADH9 Alcohol dehydr 99.5 2.9E-13 6.2E-18 89.9 9.3 77 20-97 5-82 (312)
116 cd08267 MDR1 Medium chain dehy 99.5 2.3E-13 5.1E-18 90.3 8.7 86 12-98 3-90 (319)
117 cd08241 QOR1 Quinone oxidoredu 99.5 8.3E-13 1.8E-17 87.4 10.7 88 7-98 1-89 (323)
118 cd08251 polyketide_synthase po 99.3 8.6E-12 1.9E-16 82.1 8.7 68 29-98 2-69 (303)
119 cd05188 MDR Medium chain reduc 99.2 3.6E-11 7.9E-16 78.0 7.4 61 36-98 1-61 (271)
120 cd05195 enoyl_red enoyl reduct 99.2 1.3E-10 2.8E-15 75.7 7.6 59 35-98 1-59 (293)
121 COG2130 Putative NADP-dependen 99.1 6.6E-10 1.4E-14 74.2 8.6 86 7-98 9-101 (340)
122 smart00829 PKS_ER Enoylreducta 98.9 8E-09 1.7E-13 67.3 6.6 54 39-98 2-55 (288)
123 KOG1198 Zinc-binding oxidoredu 98.8 3.2E-08 7E-13 67.8 9.0 91 7-97 5-100 (347)
124 cd08255 2-desacetyl-2-hydroxye 98.3 1.5E-06 3.3E-11 57.0 4.3 35 63-97 17-51 (277)
125 KOG1196 Predicted NAD-dependen 97.6 0.0014 3E-08 44.4 9.5 90 7-98 4-101 (343)
126 KOG1202 Animal-type fatty acid 94.3 0.17 3.6E-06 40.9 5.9 69 20-98 1427-1502(2376)
127 cd00320 cpn10 Chaperonin 10 Kd 93.8 0.09 2E-06 29.6 2.9 22 74-95 35-65 (93)
128 PTZ00414 10 kDa heat shock pro 93.3 0.13 2.7E-06 29.5 2.9 22 74-95 45-70 (100)
129 PRK00364 groES co-chaperonin G 93.0 0.12 2.6E-06 29.3 2.5 23 74-96 36-67 (95)
130 PRK14533 groES co-chaperonin G 91.2 0.33 7.1E-06 27.3 2.9 23 74-96 36-62 (91)
131 COG0234 GroS Co-chaperonin Gro 90.7 0.32 7E-06 27.6 2.6 21 75-95 37-66 (96)
132 PF13823 ADH_N_assoc: Alcohol 90.7 0.34 7.3E-06 20.2 2.0 22 7-32 1-22 (23)
133 PF00166 Cpn10: Chaperonin 10 90.5 0.31 6.6E-06 27.4 2.4 24 73-96 34-66 (93)
134 KOG1641 Mitochondrial chaperon 82.2 2.1 4.6E-05 24.6 2.8 25 71-95 41-74 (104)
135 PF11017 DUF2855: Protein of u 68.8 6.7 0.00015 27.1 3.0 23 75-99 38-60 (314)
136 PF02261 Asp_decarbox: Asparta 61.6 5.8 0.00012 23.4 1.4 30 68-97 59-88 (116)
137 cd06919 Asp_decarbox Aspartate 57.7 8.2 0.00018 22.5 1.6 30 68-97 58-87 (111)
138 PF15057 DUF4537: Domain of un 55.5 17 0.00037 21.5 2.8 15 85-99 53-67 (124)
139 TIGR00223 panD L-aspartate-alp 54.2 10 0.00022 22.7 1.6 30 68-97 59-88 (126)
140 PRK05449 aspartate alpha-decar 50.8 12 0.00026 22.4 1.5 30 68-97 59-88 (126)
141 PF03459 TOBE: TOBE domain; I 49.8 12 0.00026 18.8 1.3 13 87-99 46-58 (64)
142 PF07076 DUF1344: Protein of u 48.9 16 0.00035 19.0 1.7 15 85-99 35-49 (61)
143 TIGR00638 Mop molybdenum-pteri 46.8 18 0.00039 18.4 1.7 13 87-99 48-60 (69)
144 PF10377 ATG11: Autophagy-rela 46.3 17 0.00037 21.7 1.7 15 85-99 40-54 (129)
145 PF10844 DUF2577: Protein of u 44.1 20 0.00044 20.3 1.8 12 86-97 75-86 (100)
146 PRK06763 F0F1 ATP synthase sub 40.2 36 0.00079 22.1 2.6 11 86-96 73-83 (213)
147 smart00739 KOW KOW (Kyprides, 37.4 35 0.00075 13.8 1.6 10 88-97 2-11 (28)
148 KOG3209 WW domain-containing p 36.6 18 0.0004 28.1 1.0 23 75-98 782-807 (984)
149 PF01959 DHQS: 3-dehydroquinat 36.5 25 0.00055 24.8 1.6 15 85-99 323-337 (354)
150 PF14031 D-ser_dehydrat: Putat 35.8 48 0.001 18.5 2.4 24 73-97 53-76 (94)
151 KOG0479 DNA replication licens 34.7 36 0.00078 26.2 2.2 19 82-100 221-241 (818)
152 PF07039 DUF1325: SGF29 tudor- 34.4 29 0.00062 20.8 1.4 15 85-99 69-83 (130)
153 PRK02290 3-dehydroquinate synt 34.2 28 0.00061 24.5 1.5 16 84-99 312-327 (344)
154 PF01796 DUF35: DUF35 OB-fold 33.3 74 0.0016 16.3 3.0 26 73-98 41-67 (68)
155 PF10077 DUF2314: Uncharacteri 31.0 64 0.0014 19.3 2.6 27 70-96 62-88 (133)
156 PF12148 DUF3590: Protein of u 30.7 35 0.00075 19.0 1.3 14 85-98 63-76 (85)
157 PF01079 Hint: Hint module; I 29.6 34 0.00074 22.4 1.3 14 85-98 29-42 (217)
158 PF01455 HupF_HypC: HupF/HypC 29.2 69 0.0015 16.8 2.2 24 74-97 23-47 (68)
159 PF13533 Biotin_lipoyl_2: Biot 28.6 80 0.0017 15.2 3.0 26 72-97 7-33 (50)
160 COG0150 PurM Phosphoribosylami 28.4 93 0.002 22.0 3.2 29 72-100 151-184 (345)
161 TIGR03366 HpnZ_proposed putati 27.2 45 0.00098 22.0 1.6 10 87-96 25-34 (280)
162 PF10447 EXOSC1: Exosome compo 27.0 43 0.00093 18.4 1.2 30 68-97 40-78 (82)
163 PF14801 GCD14_N: tRNA methylt 26.2 35 0.00076 17.3 0.7 10 87-96 5-14 (54)
164 TIGR00739 yajC preprotein tran 25.1 42 0.00091 18.4 1.0 11 86-96 36-46 (84)
165 COG0853 PanD Aspartate 1-decar 25.0 54 0.0012 19.6 1.5 30 68-97 58-87 (126)
166 KOG0971 Microtubule-associated 24.0 86 0.0019 25.4 2.7 29 69-99 14-42 (1243)
167 PF14444 S1-like: S1-like 23.8 60 0.0013 16.7 1.3 9 89-97 35-43 (58)
168 cd00986 PDZ_LON_protease PDZ d 23.5 91 0.002 16.1 2.1 11 87-97 24-34 (79)
169 PF03347 TDH: Vibrio thermosta 22.9 25 0.00055 21.3 -0.2 24 25-48 4-27 (166)
170 PHA02097 hypothetical protein 21.9 1.1E+02 0.0024 15.3 2.0 12 33-44 18-29 (59)
171 PF02643 DUF192: Uncharacteriz 21.4 43 0.00094 19.1 0.6 22 74-95 81-105 (108)
172 COG0179 MhpD 2-keto-4-pentenoa 21.1 91 0.002 21.1 2.1 22 75-96 227-250 (266)
173 cd00136 PDZ PDZ domain, also c 21.1 89 0.0019 15.5 1.8 12 87-98 30-41 (70)
174 PF02211 NHase_beta: Nitrile h 20.6 82 0.0018 20.7 1.8 14 84-97 131-144 (222)
175 TIGR00074 hypC_hupF hydrogenas 20.5 1.4E+02 0.003 16.1 2.4 13 86-98 34-46 (76)
176 PF10417 1-cysPrx_C: C-termina 20.4 44 0.00096 15.6 0.4 10 87-96 15-24 (40)
177 COG1430 Uncharacterized conser 20.2 1E+02 0.0022 18.4 2.0 22 76-97 96-120 (126)
178 PF06003 SMN: Survival motor n 20.1 79 0.0017 21.3 1.7 14 86-99 67-80 (264)
No 1
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=99.93 E-value=8.3e-26 Score=151.88 Aligned_cols=86 Identities=28% Similarity=0.373 Sum_probs=80.7
Q ss_pred cceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCC
Q 040376 5 PLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELES 84 (100)
Q Consensus 5 ~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~ 84 (100)
.+|||+++.+++++ +++.+.+.|.|+++||+|+++|||+|++|++.++|.++ ...+|.++|||.+|+|+++|++
T Consensus 2 ~~mkA~~~~~~~~p---l~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~---~~~~P~ipGHEivG~V~~vG~~ 75 (339)
T COG1064 2 MTMKAAVLKKFGQP---LEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWP---VPKLPLIPGHEIVGTVVEVGEG 75 (339)
T ss_pred cceEEEEEccCCCC---ceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCC---CCCCCccCCcceEEEEEEecCC
Confidence 46999999999887 89999999999999999999999999999999999987 4459999999999999999999
Q ss_pred CCccCCCCEEEe
Q 040376 85 FNNFCPSRTYFD 96 (100)
Q Consensus 85 v~~~~~Gd~V~~ 96 (100)
|++|++||||..
T Consensus 76 V~~~k~GDrVgV 87 (339)
T COG1064 76 VTGLKVGDRVGV 87 (339)
T ss_pred CccCCCCCEEEe
Confidence 999999999965
No 2
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.89 E-value=1.1e-22 Score=134.98 Aligned_cols=90 Identities=18% Similarity=0.202 Sum_probs=81.7
Q ss_pred CcccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEee
Q 040376 2 AGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCE 81 (100)
Q Consensus 2 ~~~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~v 81 (100)
+.+.+.++|.+..+++. ..+++.+++.|+++++||+|+++|||+|++|++++.|.|+ ...+|.++|||.+|+|+++
T Consensus 5 ~~p~k~~g~~~~~~~G~-l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg---~s~~PlV~GHEiaG~Vvkv 80 (360)
T KOG0023|consen 5 SIPEKQFGWAARDPSGV-LSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWG---LSKYPLVPGHEIAGVVVKV 80 (360)
T ss_pred cCchhhEEEEEECCCCC-CCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCC---cccCCccCCceeeEEEEEE
Confidence 34667899999888774 5577899999999999999999999999999999999987 4789999999999999999
Q ss_pred cCCCCccCCCCEEE
Q 040376 82 LESFNNFCPSRTYF 95 (100)
Q Consensus 82 G~~v~~~~~Gd~V~ 95 (100)
|++|++|++||||-
T Consensus 81 Gs~V~~~kiGD~vG 94 (360)
T KOG0023|consen 81 GSNVTGFKIGDRVG 94 (360)
T ss_pred CCCcccccccCeee
Confidence 99999999999994
No 3
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=99.89 E-value=9.6e-23 Score=136.20 Aligned_cols=87 Identities=20% Similarity=0.223 Sum_probs=81.0
Q ss_pred ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376 6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF 85 (100)
Q Consensus 6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v 85 (100)
.+|++++.+.++| |+++++.++.|++|||+||+.|+|+|++|...+.|..+ ..+|.++|||.+|+|+++|++|
T Consensus 2 k~~aAV~~~~~~P---l~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p----~~~P~vLGHEgAGiVe~VG~gV 74 (366)
T COG1062 2 KTRAAVAREAGKP---LEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDP----EGFPAVLGHEGAGIVEAVGEGV 74 (366)
T ss_pred CceEeeeecCCCC---eEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCC----CCCceecccccccEEEEecCCc
Confidence 3689999989988 99999999999999999999999999999999999865 3599999999999999999999
Q ss_pred CccCCCCEEEeecC
Q 040376 86 NNFCPSRTYFDVYD 99 (100)
Q Consensus 86 ~~~~~Gd~V~~~~~ 99 (100)
+.+++||+|+.+|.
T Consensus 75 t~vkpGDhVI~~f~ 88 (366)
T COG1062 75 TSVKPGDHVILLFT 88 (366)
T ss_pred cccCCCCEEEEccc
Confidence 99999999998875
No 4
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=99.88 E-value=5.3e-22 Score=134.08 Aligned_cols=89 Identities=29% Similarity=0.458 Sum_probs=81.0
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
||++.+.+++++ +.+++++.+.|.|++|||+|||++++|||.|++.+.|... ...++|.++|.|++|+|+++|++|+
T Consensus 1 mka~~~~~~g~~-~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~--~~~~~P~i~G~d~aG~V~avG~~V~ 77 (326)
T COG0604 1 MKAVVVEEFGGP-EVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAP--PVRPLPFIPGSEAAGVVVAVGSGVT 77 (326)
T ss_pred CeEEEEeccCCC-ceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCC--CCCCCCCcccceeEEEEEEeCCCCC
Confidence 789999999887 6699999999999999999999999999999999998732 2456899999999999999999999
Q ss_pred ccCCCCEEEeec
Q 040376 87 NFCPSRTYFDVY 98 (100)
Q Consensus 87 ~~~~Gd~V~~~~ 98 (100)
.|++||||+...
T Consensus 78 ~~~~GdrV~~~~ 89 (326)
T COG0604 78 GFKVGDRVAALG 89 (326)
T ss_pred CcCCCCEEEEcc
Confidence 999999998863
No 5
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.86 E-value=2.1e-21 Score=125.89 Aligned_cols=91 Identities=25% Similarity=0.391 Sum_probs=84.4
Q ss_pred ccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecC
Q 040376 4 KPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELE 83 (100)
Q Consensus 4 ~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~ 83 (100)
+...|.+++++.|++ +.+++++.+.|+|.++|++||.+|||+|+.|...++|.+. +.++|.+||.|.+|+|+++|+
T Consensus 6 p~~~k~i~v~e~Ggy-dvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~---~~plPytpGmEaaGvVvAvG~ 81 (336)
T KOG1197|consen 6 PPLLKCIVVTEFGGY-DVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYD---PAPLPYTPGMEAAGVVVAVGE 81 (336)
T ss_pred CchheEEEEeccCCc-ceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccC---CCCCCcCCCcccceEEEEecC
Confidence 456799999999998 9999999999999999999999999999999999999985 468899999999999999999
Q ss_pred CCCccCCCCEEEeec
Q 040376 84 SFNNFCPSRTYFDVY 98 (100)
Q Consensus 84 ~v~~~~~Gd~V~~~~ 98 (100)
++++|++||||.-+.
T Consensus 82 gvtdrkvGDrVayl~ 96 (336)
T KOG1197|consen 82 GVTDRKVGDRVAYLN 96 (336)
T ss_pred CccccccccEEEEec
Confidence 999999999997653
No 6
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.86 E-value=2.1e-21 Score=128.72 Aligned_cols=89 Identities=21% Similarity=0.188 Sum_probs=82.3
Q ss_pred cceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCC
Q 040376 5 PLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELES 84 (100)
Q Consensus 5 ~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~ 84 (100)
.++||++..+++.| |.++|+..++|+.+||+||+.++++|++|...+.|..+ ...+|.++|||++|+|+++|++
T Consensus 6 I~CKAAV~w~a~~P---L~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~---~~~fP~IlGHEaaGIVESvGeg 79 (375)
T KOG0022|consen 6 ITCKAAVAWEAGKP---LVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDP---EGLFPVILGHEAAGIVESVGEG 79 (375)
T ss_pred eEEeEeeeccCCCC---eeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCc---cccCceEecccceeEEEEecCC
Confidence 46899999999988 99999999999999999999999999999999988753 5678999999999999999999
Q ss_pred CCccCCCCEEEeecC
Q 040376 85 FNNFCPSRTYFDVYD 99 (100)
Q Consensus 85 v~~~~~Gd~V~~~~~ 99 (100)
|+.|++||+|+.+|.
T Consensus 80 V~~vk~GD~Viplf~ 94 (375)
T KOG0022|consen 80 VTTVKPGDHVIPLFT 94 (375)
T ss_pred ccccCCCCEEeeccc
Confidence 999999999998863
No 7
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=99.83 E-value=5.4e-20 Score=125.15 Aligned_cols=84 Identities=19% Similarity=0.303 Sum_probs=76.1
Q ss_pred ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376 6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF 85 (100)
Q Consensus 6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v 85 (100)
+||++++++++.+ +++++.+.|.|+++||+||+.++++|++|++...|.+. ..+|.++|||++|+|+++|+++
T Consensus 1 ~mka~~~~~~~~~---~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~----~~~p~i~G~e~~G~V~~vG~~v 73 (358)
T TIGR03451 1 TVRGVIARSKGAP---VELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIN----DEFPFLLGHEAAGVVEAVGEGV 73 (358)
T ss_pred CcEEEEEccCCCC---CEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCcc----ccCCcccccceEEEEEEeCCCC
Confidence 5999999998776 78899999999999999999999999999999887643 3468899999999999999999
Q ss_pred CccCCCCEEEe
Q 040376 86 NNFCPSRTYFD 96 (100)
Q Consensus 86 ~~~~~Gd~V~~ 96 (100)
++|++||+|++
T Consensus 74 ~~~~~GdrV~~ 84 (358)
T TIGR03451 74 TDVAPGDYVVL 84 (358)
T ss_pred cccCCCCEEEE
Confidence 99999999986
No 8
>PLN02740 Alcohol dehydrogenase-like
Probab=99.83 E-value=6e-20 Score=125.95 Aligned_cols=88 Identities=22% Similarity=0.190 Sum_probs=77.1
Q ss_pred cceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCC
Q 040376 5 PLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELES 84 (100)
Q Consensus 5 ~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~ 84 (100)
.+||++++.+++.+ +.+++.+.|.|.++||+||++++|+|++|++.+.|.+.. ...+|.++|||++|+|+++|++
T Consensus 9 ~~mka~~~~~~~~~---~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~--~~~~p~i~GhE~~G~V~~vG~~ 83 (381)
T PLN02740 9 ITCKAAVAWGPGEP---LVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEA--QRAYPRILGHEAAGIVESVGEG 83 (381)
T ss_pred eeeEEEEEecCCCC---cEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcc--cCCCCccccccceEEEEEeCCC
Confidence 47999999876654 788899999999999999999999999999998886531 2357899999999999999999
Q ss_pred CCccCCCCEEEee
Q 040376 85 FNNFCPSRTYFDV 97 (100)
Q Consensus 85 v~~~~~Gd~V~~~ 97 (100)
+++|++||||++.
T Consensus 84 v~~~~vGdrV~~~ 96 (381)
T PLN02740 84 VEDLKAGDHVIPI 96 (381)
T ss_pred CCcCCCCCEEEec
Confidence 9999999999864
No 9
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=99.83 E-value=5e-20 Score=125.12 Aligned_cols=87 Identities=20% Similarity=0.282 Sum_probs=73.4
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
||++++.. +++ + +++++.+.|.|+++||+||++++++|++|++.+.|.+.......+|.++|||++|+|+++|++ +
T Consensus 1 mka~~~~~-~~~-~-l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~ 76 (355)
T cd08230 1 MKAIAVKP-GKP-G-VRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-S 76 (355)
T ss_pred CceeEecC-CCC-C-CeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-C
Confidence 68888874 333 3 899999999999999999999999999999999887532112246789999999999999999 9
Q ss_pred ccCCCCEEEee
Q 040376 87 NFCPSRTYFDV 97 (100)
Q Consensus 87 ~~~~Gd~V~~~ 97 (100)
.|++||||+..
T Consensus 77 ~~~vGdrV~~~ 87 (355)
T cd08230 77 GLSPGDLVVPT 87 (355)
T ss_pred CCCCCCEEEec
Confidence 99999999764
No 10
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=99.83 E-value=6.4e-20 Score=126.55 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=71.3
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCC-------CCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEE
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPS-------KDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIF 79 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~-------~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~ 79 (100)
|||+++..++ .+++++.+.|.|+ ++|||||+.++|||++|++.+.|.+. ..+|.++|||++|+|+
T Consensus 3 mka~v~~~~~----~~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~----~~~p~i~GhE~~G~V~ 74 (393)
T TIGR02819 3 NRGVVYLGPG----KVEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTT----APTGLVLGHEITGEVI 74 (393)
T ss_pred ceEEEEecCC----ceeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCC----CCCCccccceeEEEEE
Confidence 8999887643 3888899988874 68999999999999999999887542 3568999999999999
Q ss_pred eecCCCCccCCCCEEEe
Q 040376 80 CELESFNNFCPSRTYFD 96 (100)
Q Consensus 80 ~vG~~v~~~~~Gd~V~~ 96 (100)
++|++|++|++||||..
T Consensus 75 ~vG~~V~~~~vGdrV~~ 91 (393)
T TIGR02819 75 EKGRDVEFIKIGDIVSV 91 (393)
T ss_pred EEcCccccccCCCEEEE
Confidence 99999999999999965
No 11
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=99.82 E-value=8.6e-20 Score=124.70 Aligned_cols=87 Identities=22% Similarity=0.235 Sum_probs=77.0
Q ss_pred eeeEEEcccCCC-----CcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEee
Q 040376 7 MHAVQYNSYGGG-----AADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCE 81 (100)
Q Consensus 7 ~ka~~~~~~~~~-----~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~v 81 (100)
|||+++.++|.+ ++.+++++.+.|.|+++||+||+.+++||++|++.+.|.++ ..+|.++|||++|+|+++
T Consensus 1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~----~~~p~i~GhE~~G~V~~v 76 (371)
T cd08281 1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRP----RPLPMALGHEAAGVVVEV 76 (371)
T ss_pred CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCC----CCCCccCCccceeEEEEe
Confidence 799999987752 26789999999999999999999999999999999888643 346889999999999999
Q ss_pred cCCCCccCCCCEEEee
Q 040376 82 LESFNNFCPSRTYFDV 97 (100)
Q Consensus 82 G~~v~~~~~Gd~V~~~ 97 (100)
|+++++|++||||++.
T Consensus 77 G~~v~~~~~GdrV~~~ 92 (371)
T cd08281 77 GEGVTDLEVGDHVVLV 92 (371)
T ss_pred CCCCCcCCCCCEEEEc
Confidence 9999999999999863
No 12
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=99.82 E-value=1.6e-19 Score=123.18 Aligned_cols=86 Identities=22% Similarity=0.169 Sum_probs=76.5
Q ss_pred ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376 6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF 85 (100)
Q Consensus 6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v 85 (100)
+|||+++.+.+.+ +++++.+.|.|+++||+||+.++++|++|++.+.|..+ ...+|.++|||++|+|+++|+++
T Consensus 2 ~~ka~~~~~~~~~---~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~---~~~~p~i~G~e~~G~V~~vG~~v 75 (369)
T cd08301 2 TCKAAVAWEAGKP---LVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQ---TPLFPRILGHEAAGIVESVGEGV 75 (369)
T ss_pred ccEEEEEecCCCC---cEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCC---CCCCCcccccccceEEEEeCCCC
Confidence 5899998876654 88999999999999999999999999999998887653 34568899999999999999999
Q ss_pred CccCCCCEEEee
Q 040376 86 NNFCPSRTYFDV 97 (100)
Q Consensus 86 ~~~~~Gd~V~~~ 97 (100)
++|++||||+++
T Consensus 76 ~~~~~GdrV~~~ 87 (369)
T cd08301 76 TDLKPGDHVLPV 87 (369)
T ss_pred CccccCCEEEEc
Confidence 999999999875
No 13
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.81 E-value=4.1e-20 Score=122.92 Aligned_cols=88 Identities=16% Similarity=0.069 Sum_probs=76.7
Q ss_pred cceeeEEEcccCCCCcceEEeeccCCCC-CCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecC
Q 040376 5 PLMHAVQYNSYGGGAADLKHVELPVPTP-SKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELE 83 (100)
Q Consensus 5 ~~~ka~~~~~~~~~~~~~~~~~~~~p~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~ 83 (100)
+.|+|+++.+. .++++++.+.|++ .|+||+|+++++|||.+|++.+.+.....+..+.|.++|||.+|+|.++|+
T Consensus 3 ~~~~A~vl~g~----~di~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~ 78 (354)
T KOG0024|consen 3 ADNLALVLRGK----GDIRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGD 78 (354)
T ss_pred cccceeEEEcc----CceeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhcc
Confidence 45899999875 4489999999987 999999999999999999999887654334457899999999999999999
Q ss_pred CCCccCCCCEEEe
Q 040376 84 SFNNFCPSRTYFD 96 (100)
Q Consensus 84 ~v~~~~~Gd~V~~ 96 (100)
.|+.+++||||..
T Consensus 79 ~Vk~LkVGDrVai 91 (354)
T KOG0024|consen 79 EVKHLKVGDRVAI 91 (354)
T ss_pred cccccccCCeEEe
Confidence 9999999999963
No 14
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=99.81 E-value=1.3e-19 Score=105.18 Aligned_cols=62 Identities=24% Similarity=0.289 Sum_probs=53.2
Q ss_pred CCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCccCCCCEEEee
Q 040376 34 KDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDV 97 (100)
Q Consensus 34 ~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~ 97 (100)
|+||+||++++|||++|++.+.+... ....+|.++|||++|+|+++|+++++|++||+|+..
T Consensus 1 P~eVlVkv~a~gic~~D~~~~~g~~~--~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~ 62 (109)
T PF08240_consen 1 PGEVLVKVRAAGICGSDLHIREGGPP--PPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVS 62 (109)
T ss_dssp TTEEEEEEEEEEE-HHHHHHHTTSSS--STSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEE
T ss_pred CCEEEEEEEEeeeCHHHHHHHhhccc--cCCCCCcccccceeeeeeeeccccccccccceeeee
Confidence 68999999999999999999998522 256789999999999999999999999999999874
No 15
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=99.81 E-value=3.4e-19 Score=121.77 Aligned_cols=85 Identities=24% Similarity=0.171 Sum_probs=75.2
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
||++++...+.. +++++.+.|.|.++||+||++++++|++|++...|.++ ...+|.++|||++|+|+++|++++
T Consensus 2 ~~a~~~~~~~~~---l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~---~~~~p~i~GhE~~G~V~~vG~~v~ 75 (368)
T TIGR02818 2 SRAAVAWAAGQP---LKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADP---EGVFPVILGHEGAGIVEAVGEGVT 75 (368)
T ss_pred ceEEEEecCCCC---eEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCC---CCCCCeeeccccEEEEEEECCCCc
Confidence 789888876554 88899999999999999999999999999999888653 235789999999999999999999
Q ss_pred ccCCCCEEEee
Q 040376 87 NFCPSRTYFDV 97 (100)
Q Consensus 87 ~~~~Gd~V~~~ 97 (100)
+|++||||++.
T Consensus 76 ~~~~GdrV~~~ 86 (368)
T TIGR02818 76 SVKVGDHVIPL 86 (368)
T ss_pred cCCCCCEEEEc
Confidence 99999999764
No 16
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=99.80 E-value=5.9e-19 Score=120.51 Aligned_cols=86 Identities=22% Similarity=0.158 Sum_probs=75.8
Q ss_pred ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376 6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF 85 (100)
Q Consensus 6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v 85 (100)
+||++++...+++ +++++.+.|.|.++||+||++++++|+.|++...|.++ ...+|.++|||++|+|+++|+++
T Consensus 2 ~~~a~~~~~~~~~---~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~---~~~~p~v~G~E~~G~V~~vG~~v 75 (368)
T cd08300 2 TCKAAVAWEAGKP---LSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADP---EGLFPVILGHEGAGIVESVGEGV 75 (368)
T ss_pred cceEEEEecCCCC---cEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCc---cCCCCceeccceeEEEEEeCCCC
Confidence 5899988776554 88899999999999999999999999999999887653 23578899999999999999999
Q ss_pred CccCCCCEEEee
Q 040376 86 NNFCPSRTYFDV 97 (100)
Q Consensus 86 ~~~~~Gd~V~~~ 97 (100)
++|++||+|++.
T Consensus 76 ~~~~vGdrV~~~ 87 (368)
T cd08300 76 TSVKPGDHVIPL 87 (368)
T ss_pred ccCCCCCEEEEc
Confidence 999999999865
No 17
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.80 E-value=7.3e-19 Score=117.72 Aligned_cols=86 Identities=15% Similarity=0.274 Sum_probs=72.0
Q ss_pred ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeC-hhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCC
Q 040376 6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALN-PVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELES 84 (100)
Q Consensus 6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~-~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~ 84 (100)
+||++++.++ +.+++++.+.|.|+++||+||+.+++|| .+|++.+.|.++......+|.++|||++|+|+++|++
T Consensus 1 ~~ka~~~~~~----~~l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~ 76 (308)
T TIGR01202 1 KTQAIVLSGP----NQIELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPD 76 (308)
T ss_pred CceEEEEeCC----CeEEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCC
Confidence 3788888753 5589999999999999999999999997 5899888876542111357899999999999999999
Q ss_pred CCccCCCCEEEe
Q 040376 85 FNNFCPSRTYFD 96 (100)
Q Consensus 85 v~~~~~Gd~V~~ 96 (100)
+ .|++||||+.
T Consensus 77 v-~~~vGdrV~~ 87 (308)
T TIGR01202 77 T-GFRPGDRVFV 87 (308)
T ss_pred C-CCCCCCEEEE
Confidence 8 6999999985
No 18
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=99.78 E-value=2.4e-18 Score=115.48 Aligned_cols=89 Identities=27% Similarity=0.336 Sum_probs=76.1
Q ss_pred eeeEEEcccCCCC--cceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCC
Q 040376 7 MHAVQYNSYGGGA--ADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELES 84 (100)
Q Consensus 7 ~ka~~~~~~~~~~--~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~ 84 (100)
||++++.+++.+. +.+++.+.+.|.|+++||+||+.++++|+.|+....|.++. ...+|.++|||++|+|+++|++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~--~~~~p~v~G~e~~G~V~~vG~~ 78 (324)
T cd08291 1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGS--TKALPVPPGFEGSGTVVAAGGG 78 (324)
T ss_pred CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCC--CCCCCcCCCcceEEEEEEECCC
Confidence 6899998876531 45888899999999999999999999999999998886542 2356789999999999999999
Q ss_pred CCc-cCCCCEEEee
Q 040376 85 FNN-FCPSRTYFDV 97 (100)
Q Consensus 85 v~~-~~~Gd~V~~~ 97 (100)
+++ |++||+|+++
T Consensus 79 v~~~~~vGd~V~~~ 92 (324)
T cd08291 79 PLAQSLIGKRVAFL 92 (324)
T ss_pred ccccCCCCCEEEec
Confidence 986 9999999875
No 19
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=99.77 E-value=3.5e-18 Score=115.23 Aligned_cols=85 Identities=22% Similarity=0.280 Sum_probs=73.0
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
|||+++.+. +.+++++.+.|.|.++||+||+.++++|+.|++.+.+.+.. ....|.++|||++|+|+++|++++
T Consensus 1 mka~~~~~~----~~l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~--~~~~p~i~G~e~~G~V~~vG~~v~ 74 (339)
T cd08239 1 MRGAVFPGD----RTVELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRA--PAYQGVIPGHEPAGVVVAVGPGVT 74 (339)
T ss_pred CeEEEEecC----CceEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCc--cCCCCceeccCceEEEEEECCCCc
Confidence 789988753 45899999999999999999999999999999988765431 223578999999999999999999
Q ss_pred ccCCCCEEEee
Q 040376 87 NFCPSRTYFDV 97 (100)
Q Consensus 87 ~~~~Gd~V~~~ 97 (100)
.|++||+|+..
T Consensus 75 ~~~~Gd~V~~~ 85 (339)
T cd08239 75 HFRVGDRVMVY 85 (339)
T ss_pred cCCCCCEEEEC
Confidence 99999999864
No 20
>PLN02827 Alcohol dehydrogenase-like
Probab=99.77 E-value=3.3e-18 Score=117.40 Aligned_cols=83 Identities=23% Similarity=0.182 Sum_probs=73.0
Q ss_pred ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376 6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF 85 (100)
Q Consensus 6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v 85 (100)
.||++++.+.+ +.+++++.+.|.|+++||+||+.++|+|++|++.+.+.. .+|.++|||++|+|+++|+++
T Consensus 12 ~mka~~~~~~~---~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~------~~p~i~GhE~~G~V~~vG~~v 82 (378)
T PLN02827 12 TCRAAVAWGAG---EALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA------LFPRIFGHEASGIVESIGEGV 82 (378)
T ss_pred eeEEEEEecCC---CCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC------CCCeeecccceEEEEEcCCCC
Confidence 59999987654 348889999999999999999999999999999876631 357899999999999999999
Q ss_pred CccCCCCEEEee
Q 040376 86 NNFCPSRTYFDV 97 (100)
Q Consensus 86 ~~~~~Gd~V~~~ 97 (100)
++|++||+|++.
T Consensus 83 ~~~~~GdrV~~~ 94 (378)
T PLN02827 83 TEFEKGDHVLTV 94 (378)
T ss_pred cccCCCCEEEEe
Confidence 999999999875
No 21
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=99.77 E-value=2.8e-18 Score=117.09 Aligned_cols=86 Identities=12% Similarity=0.139 Sum_probs=71.5
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
||++.+...+.. +.+++.+.+.|.|+++||+||+.++|+|++|++.+.|.+. ...+|.++|||++|+|+++|++++
T Consensus 11 ~~~~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~---~~~~p~i~GhE~~G~V~~vG~~v~ 86 (360)
T PLN02586 11 QKAFGWAARDPS-GVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWG---FTRYPIVPGHEIVGIVTKLGKNVK 86 (360)
T ss_pred hheeEEEecCCC-CCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcC---CCCCCccCCcceeEEEEEECCCCC
Confidence 565555444443 5588888888999999999999999999999999887643 235688999999999999999999
Q ss_pred ccCCCCEEEe
Q 040376 87 NFCPSRTYFD 96 (100)
Q Consensus 87 ~~~~Gd~V~~ 96 (100)
+|++||+|+.
T Consensus 87 ~~~vGdrV~~ 96 (360)
T PLN02586 87 KFKEGDRVGV 96 (360)
T ss_pred ccCCCCEEEE
Confidence 9999999973
No 22
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=99.77 E-value=3.1e-18 Score=112.71 Aligned_cols=92 Identities=21% Similarity=0.274 Sum_probs=83.6
Q ss_pred ccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecC
Q 040376 4 KPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELE 83 (100)
Q Consensus 4 ~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~ 83 (100)
+...|+++++.+|.|.+.+++.+.+.|....++|+||..|+.|||+|+..++|.|+- ..++|.+-|.|++|+|+++|+
T Consensus 17 ~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpv--rP~~PAVgGnEGv~eVv~vGs 94 (354)
T KOG0025|consen 17 PARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPV--RPELPAVGGNEGVGEVVAVGS 94 (354)
T ss_pred ccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCC--CCCCCcccCCcceEEEEEecC
Confidence 345789999999998788999999999988888999999999999999999999873 567899999999999999999
Q ss_pred CCCccCCCCEEEee
Q 040376 84 SFNNFCPSRTYFDV 97 (100)
Q Consensus 84 ~v~~~~~Gd~V~~~ 97 (100)
++.+|++||+|+..
T Consensus 95 ~vkgfk~Gd~VIp~ 108 (354)
T KOG0025|consen 95 NVKGFKPGDWVIPL 108 (354)
T ss_pred CcCccCCCCeEeec
Confidence 99999999999865
No 23
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=99.76 E-value=6.5e-18 Score=115.27 Aligned_cols=85 Identities=24% Similarity=0.198 Sum_probs=75.1
Q ss_pred ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376 6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF 85 (100)
Q Consensus 6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v 85 (100)
.||++++...+.+ +++++.+.|.+.++||+||+.++++|++|++...|... ..+|.++|||++|+|+++|+++
T Consensus 2 ~~ka~~~~~~~~~---~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~----~~~p~i~G~e~~G~V~~vG~~v 74 (365)
T cd08277 2 KCKAAVAWEAGKP---LVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA----TLFPVILGHEGAGIVESVGEGV 74 (365)
T ss_pred ccEEEEEccCCCC---cEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC----CCCCeecccceeEEEEeeCCCC
Confidence 3789988876554 88999999999999999999999999999999887643 3567899999999999999999
Q ss_pred CccCCCCEEEee
Q 040376 86 NNFCPSRTYFDV 97 (100)
Q Consensus 86 ~~~~~Gd~V~~~ 97 (100)
++|++||+|++.
T Consensus 75 ~~~~~GdrV~~~ 86 (365)
T cd08277 75 TNLKPGDKVIPL 86 (365)
T ss_pred ccCCCCCEEEEC
Confidence 999999999875
No 24
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=99.76 E-value=9.6e-18 Score=113.24 Aligned_cols=84 Identities=21% Similarity=0.264 Sum_probs=71.0
Q ss_pred EEEcccCCCC-cceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCcc
Q 040376 10 VQYNSYGGGA-ADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNF 88 (100)
Q Consensus 10 ~~~~~~~~~~-~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 88 (100)
+.+..++.+. ..+++++.|.|.|+++||+||+.++++|++|++...|.++ ....|.++|||++|+|+++|+++++|
T Consensus 2 ~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~---~~~~p~i~G~e~~G~V~~vG~~v~~~ 78 (329)
T TIGR02822 2 WEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLP---VHRPRVTPGHEVVGEVAGRGADAGGF 78 (329)
T ss_pred eeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCC---CCCCCccCCcceEEEEEEECCCCccc
Confidence 4566665541 4589999999999999999999999999999999988653 12346899999999999999999999
Q ss_pred CCCCEEEe
Q 040376 89 CPSRTYFD 96 (100)
Q Consensus 89 ~~Gd~V~~ 96 (100)
++||+|+.
T Consensus 79 ~~Gd~V~~ 86 (329)
T TIGR02822 79 AVGDRVGI 86 (329)
T ss_pred CCCCEEEE
Confidence 99999974
No 25
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=99.75 E-value=1.1e-17 Score=113.90 Aligned_cols=85 Identities=14% Similarity=0.139 Sum_probs=74.9
Q ss_pred ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376 6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF 85 (100)
Q Consensus 6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v 85 (100)
.++++++.++++. +++++.+.|.|+++||+||+.++++|+.|++.+.|.+. ...+|.++|||++|+|+++|+++
T Consensus 9 ~~~~~~~~~~~~~---~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~---~~~~p~i~G~E~~G~Vv~vG~~v 82 (357)
T PLN02514 9 KTTGWAARDPSGH---LSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLG---MSNYPMVPGHEVVGEVVEVGSDV 82 (357)
T ss_pred eEEEEEEecCCCC---ceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcC---cCCCCccCCceeeEEEEEECCCc
Confidence 4789998888765 88899999999999999999999999999998887653 22467899999999999999999
Q ss_pred CccCCCCEEEe
Q 040376 86 NNFCPSRTYFD 96 (100)
Q Consensus 86 ~~~~~Gd~V~~ 96 (100)
++|++||+|+.
T Consensus 83 ~~~~~Gd~V~~ 93 (357)
T PLN02514 83 SKFTVGDIVGV 93 (357)
T ss_pred ccccCCCEEEE
Confidence 99999999973
No 26
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=99.75 E-value=1.3e-17 Score=112.87 Aligned_cols=83 Identities=13% Similarity=0.115 Sum_probs=67.9
Q ss_pred ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHh-CCCCCCCCCCCCccccccceEEEEeecCC
Q 040376 6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQK-GQLRPFLPRKFPCIPGILVLPLIFCELES 84 (100)
Q Consensus 6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~-g~~~~~~~~~~p~~~G~e~~G~V~~vG~~ 84 (100)
.+|++++... ..+++++.+.| +.++||+||+.++|||++|++.+. |.+.. ....+|.++|||++|+|+++ +
T Consensus 4 ~~~~~~~~~~----~~~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~-~~~~~p~v~GhE~~G~V~~v--~ 75 (343)
T PRK09880 4 KTQSCVVAGK----KDVAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGN-FVIKAPMVLGHEVIGKIVHS--D 75 (343)
T ss_pred cceEEEEecC----CceEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCccc-ccccCCcccCcccEEEEEEe--c
Confidence 4788888753 44888888887 688999999999999999999875 33221 12357899999999999999 6
Q ss_pred CCccCCCCEEEe
Q 040376 85 FNNFCPSRTYFD 96 (100)
Q Consensus 85 v~~~~~Gd~V~~ 96 (100)
+++|++||||+.
T Consensus 76 v~~~~vGdrV~~ 87 (343)
T PRK09880 76 SSGLKEGQTVAI 87 (343)
T ss_pred CccCCCCCEEEE
Confidence 889999999975
No 27
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=99.75 E-value=1.7e-17 Score=110.72 Aligned_cols=89 Identities=21% Similarity=0.261 Sum_probs=76.0
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
||++++.+++.+.+.+++.+.+.|.+.++||+||+.++++|+.|+....|.++. ....|.++|+|++|+|+++|++++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~--~~~~p~~~G~e~~G~V~~~G~~v~ 78 (324)
T cd08292 1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGY--KPELPAIGGSEAVGVVDAVGEGVK 78 (324)
T ss_pred CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCC--CCCCCCCCCcceEEEEEEeCCCCC
Confidence 689998876654245889999999999999999999999999999988876542 234578899999999999999999
Q ss_pred ccCCCCEEEee
Q 040376 87 NFCPSRTYFDV 97 (100)
Q Consensus 87 ~~~~Gd~V~~~ 97 (100)
+|++||+|+++
T Consensus 79 ~~~~Gd~V~~~ 89 (324)
T cd08292 79 GLQVGQRVAVA 89 (324)
T ss_pred CCCCCCEEEec
Confidence 99999999876
No 28
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=99.75 E-value=1.7e-17 Score=113.86 Aligned_cols=86 Identities=13% Similarity=0.128 Sum_probs=72.1
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
.||+.+...+.+ +.+...+.+.|.|+++||+||+.++++|++|++.+.|.+. ...+|.++|||++|+|+++|++++
T Consensus 5 ~~a~~~~~~~~~-~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~---~~~~p~i~GhE~aG~Vv~vG~~v~ 80 (375)
T PLN02178 5 NKAFGWAANDES-GVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWG---FSRYPIIPGHEIVGIATKVGKNVT 80 (375)
T ss_pred ceeEEEEEccCC-CCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCC---CCCCCcccCceeeEEEEEECCCCC
Confidence 466666555554 5588888888899999999999999999999999887653 224678999999999999999999
Q ss_pred ccCCCCEEEe
Q 040376 87 NFCPSRTYFD 96 (100)
Q Consensus 87 ~~~~Gd~V~~ 96 (100)
+|++||||..
T Consensus 81 ~~~vGdrV~~ 90 (375)
T PLN02178 81 KFKEGDRVGV 90 (375)
T ss_pred ccCCCCEEEE
Confidence 9999999973
No 29
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=99.73 E-value=2.6e-17 Score=113.94 Aligned_cols=87 Identities=20% Similarity=0.295 Sum_probs=71.0
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHH-hCCCCCCC---CCCCCccccccceEEEEeec
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQ-KGQLRPFL---PRKFPCIPGILVLPLIFCEL 82 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~-~g~~~~~~---~~~~p~~~G~e~~G~V~~vG 82 (100)
||++++.++ ..+++++.+.|.++++||+||+.++|+|++|++.+ .|...+.. ...+|.++|||++|+|+++|
T Consensus 3 ~~a~~~~~~----~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG 78 (410)
T cd08238 3 TKAWRMYGK----GDLRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVG 78 (410)
T ss_pred cEEEEEEcC----CceEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeC
Confidence 688888764 34889999999999999999999999999999976 44321100 12468899999999999999
Q ss_pred CCCC-ccCCCCEEEee
Q 040376 83 ESFN-NFCPSRTYFDV 97 (100)
Q Consensus 83 ~~v~-~~~~Gd~V~~~ 97 (100)
++++ +|++||||+..
T Consensus 79 ~~v~~~~~vGdrV~~~ 94 (410)
T cd08238 79 KKWQGKYKPGQRFVIQ 94 (410)
T ss_pred CCccCCCCCCCEEEEc
Confidence 9998 69999999864
No 30
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=99.73 E-value=3.1e-17 Score=110.12 Aligned_cols=86 Identities=23% Similarity=0.351 Sum_probs=74.9
Q ss_pred eeEEEccc---CCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCC
Q 040376 8 HAVQYNSY---GGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELES 84 (100)
Q Consensus 8 ka~~~~~~---~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~ 84 (100)
||+++.++ +.+ +.++..+.|.|.+.++||+||+.++++|+.|+....+..+ ...+|.++|+|++|+|+++|++
T Consensus 1 ~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~---~~~~~~~~g~e~~G~V~~vG~~ 76 (336)
T TIGR02817 1 KAVGYKKPLPITDP-DALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAP---EAGQPKILGWDAAGVVVAVGDE 76 (336)
T ss_pred CceeeccccCCCCc-ccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCC---CCCCCcccceeeEEEEEEeCCC
Confidence 57788876 665 7899999999999999999999999999999988877543 2346789999999999999999
Q ss_pred CCccCCCCEEEee
Q 040376 85 FNNFCPSRTYFDV 97 (100)
Q Consensus 85 v~~~~~Gd~V~~~ 97 (100)
++.|++||+|+++
T Consensus 77 v~~~~~Gd~V~~~ 89 (336)
T TIGR02817 77 VTLFKPGDEVWYA 89 (336)
T ss_pred CCCCCCCCEEEEc
Confidence 9999999999875
No 31
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=99.73 E-value=2.6e-17 Score=111.52 Aligned_cols=83 Identities=10% Similarity=0.029 Sum_probs=67.8
Q ss_pred eeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCC-CCCCCccccccceEEEEeecCCCC
Q 040376 8 HAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFL-PRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 8 ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~-~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
|+++++.+ +++++++.+.|. +++||+||++++|||++|++.+.|.+.+.. ...+|.++|||++|+|+++|.+
T Consensus 4 ~~~~~~~~----~~~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~-- 76 (341)
T cd08237 4 QVYRLVRP----KFFEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG-- 76 (341)
T ss_pred cceEEecc----ceEEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--
Confidence 66777653 558999999984 999999999999999999999988653211 1357899999999999998764
Q ss_pred ccCCCCEEEee
Q 040376 87 NFCPSRTYFDV 97 (100)
Q Consensus 87 ~~~~Gd~V~~~ 97 (100)
.|++||||+..
T Consensus 77 ~~~vGdrV~~~ 87 (341)
T cd08237 77 TYKVGTKVVMV 87 (341)
T ss_pred ccCCCCEEEEC
Confidence 79999999763
No 32
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=99.72 E-value=8.6e-17 Score=108.24 Aligned_cols=88 Identities=20% Similarity=0.293 Sum_probs=75.9
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
||++++.+++.+ +++.+.+.|.+.+++++|++.++++|+.|+....|.+.......+|.++|+|++|+|+++|+++.
T Consensus 1 ~ka~~~~~~~~~---~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~ 77 (340)
T cd05284 1 MKAARLYEYGKP---LRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVD 77 (340)
T ss_pred CeeeEeccCCCC---ceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCC
Confidence 689999877654 88888888899999999999999999999999887654222445678999999999999999999
Q ss_pred ccCCCCEEEee
Q 040376 87 NFCPSRTYFDV 97 (100)
Q Consensus 87 ~~~~Gd~V~~~ 97 (100)
.|++||+|+++
T Consensus 78 ~~~~Gd~V~~~ 88 (340)
T cd05284 78 GLKEGDPVVVH 88 (340)
T ss_pred cCcCCCEEEEc
Confidence 99999999865
No 33
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=99.72 E-value=8.8e-17 Score=108.24 Aligned_cols=92 Identities=21% Similarity=0.257 Sum_probs=76.4
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCC-CcEEEEEeEeeeChhhHHHHhCCCCCCCC--CCCCccccccceEEEEeecC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSK-DEVLLKLEATALNPVDWKIQKGQLRPFLP--RKFPCIPGILVLPLIFCELE 83 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~-~ev~v~v~~~~l~~~d~~~~~g~~~~~~~--~~~p~~~G~e~~G~V~~vG~ 83 (100)
|||+++.+.+.+.+.+.+++.+.|.|.+ ++|+||+.++++|+.|+....|..+.... ...|.++|+|++|+|+++|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~ 80 (341)
T cd08290 1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS 80 (341)
T ss_pred CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence 7999998877653468899999998887 99999999999999999988876532101 01567899999999999999
Q ss_pred CCCccCCCCEEEeec
Q 040376 84 SFNNFCPSRTYFDVY 98 (100)
Q Consensus 84 ~v~~~~~Gd~V~~~~ 98 (100)
++..|++||+|++..
T Consensus 81 ~v~~~~~Gd~V~~~~ 95 (341)
T cd08290 81 GVKSLKPGDWVIPLR 95 (341)
T ss_pred CCCCCCCCCEEEecC
Confidence 999999999999763
No 34
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=99.71 E-value=1.1e-16 Score=109.16 Aligned_cols=84 Identities=19% Similarity=0.246 Sum_probs=74.2
Q ss_pred ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376 6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF 85 (100)
Q Consensus 6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v 85 (100)
+|||+++.+++.+ +++++.+.|.+.++||+||+.++++|+.|+....+.++ ...|.++|+|++|+|+++|+++
T Consensus 2 ~~~a~~~~~~~~~---~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~----~~~p~v~G~e~~G~V~~vG~~v 74 (365)
T cd08278 2 KTTAAVVREPGGP---FVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP----TPLPAVLGHEGAGVVEAVGSAV 74 (365)
T ss_pred ccEEeeeccCCCc---ceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC----CCCCcccccceeEEEEEeCCCc
Confidence 4799999886554 78889999999999999999999999999999887653 3457899999999999999999
Q ss_pred CccCCCCEEEe
Q 040376 86 NNFCPSRTYFD 96 (100)
Q Consensus 86 ~~~~~Gd~V~~ 96 (100)
.+|++||+|++
T Consensus 75 ~~~~~Gd~V~~ 85 (365)
T cd08278 75 TGLKPGDHVVL 85 (365)
T ss_pred ccCCCCCEEEE
Confidence 99999999985
No 35
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=99.71 E-value=1.7e-16 Score=107.13 Aligned_cols=88 Identities=19% Similarity=0.170 Sum_probs=73.2
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
||++++.+.+ +.+++.+.+.|.|.++||+||+.++++|+.|+.++.+.........+|.++|+|++|+|+++|++++
T Consensus 1 ~~~~~~~~~~---~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~ 77 (341)
T PRK05396 1 MKALVKLKAE---PGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVT 77 (341)
T ss_pred CceEEEecCC---CceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCC
Confidence 6889887755 3499999999999999999999999999999987765321101224567899999999999999999
Q ss_pred ccCCCCEEEee
Q 040376 87 NFCPSRTYFDV 97 (100)
Q Consensus 87 ~~~~Gd~V~~~ 97 (100)
.|++||+|+++
T Consensus 78 ~~~~Gd~V~~~ 88 (341)
T PRK05396 78 GFKVGDRVSGE 88 (341)
T ss_pred cCCCCCEEEEC
Confidence 99999999875
No 36
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=99.70 E-value=1.4e-16 Score=108.22 Aligned_cols=84 Identities=15% Similarity=0.120 Sum_probs=73.8
Q ss_pred eeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCc
Q 040376 8 HAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNN 87 (100)
Q Consensus 8 ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 87 (100)
|++++.+++. .+++++.+.|.|.++||+||+.++++|+.|+....|.++ ...+|.++|+|++|+|+++|++++.
T Consensus 2 ka~~~~~~~~---~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~~ 75 (361)
T cd08231 2 RAAVLTGPGK---PLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRP---RVPLPIILGHEGVGRVVALGGGVTT 75 (361)
T ss_pred eEEEEcCCCC---CCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCC---CCCCCcccccCCceEEEEeCCCccc
Confidence 7888888664 389999999999999999999999999999999888653 1356789999999999999999986
Q ss_pred ------cCCCCEEEee
Q 040376 88 ------FCPSRTYFDV 97 (100)
Q Consensus 88 ------~~~Gd~V~~~ 97 (100)
|++||+|+++
T Consensus 76 ~~~~~~~~~Gd~V~~~ 91 (361)
T cd08231 76 DVAGEPLKVGDRVTWS 91 (361)
T ss_pred cccCCccCCCCEEEEc
Confidence 9999999876
No 37
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=99.70 E-value=1.7e-16 Score=107.47 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=69.0
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCC-CCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTP-SKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF 85 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v 85 (100)
||++++++++ .+++.+.+.|.| .++||+||+.++++|++|+....... ...+|.++|||++|+|+++|+++
T Consensus 1 Mka~~~~~~~----~~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~----~~~~p~i~G~e~~G~V~~vG~~v 72 (347)
T PRK10309 1 MKSVVNDTDG----IVRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNG----AHYYPITLGHEFSGYVEAVGSGV 72 (347)
T ss_pred CceEEEeCCC----ceEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCC----CCCCCcccccceEEEEEEeCCCC
Confidence 6899988643 388899999987 58999999999999999987543211 11357899999999999999999
Q ss_pred CccCCCCEEEee
Q 040376 86 NNFCPSRTYFDV 97 (100)
Q Consensus 86 ~~~~~Gd~V~~~ 97 (100)
++|++||+|+++
T Consensus 73 ~~~~vGd~V~~~ 84 (347)
T PRK10309 73 DDLHPGDAVACV 84 (347)
T ss_pred CCCCCCCEEEEC
Confidence 999999999875
No 38
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=99.70 E-value=1.9e-16 Score=106.14 Aligned_cols=88 Identities=18% Similarity=0.255 Sum_probs=77.7
Q ss_pred ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376 6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF 85 (100)
Q Consensus 6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v 85 (100)
+||++.+.+++.+ ..+++++.+.|.+.++||+||+.++++|+.|+....+.++ ...+|.++|+|++|+|+++|+++
T Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~---~~~~~~~~g~e~~G~v~~vG~~v 76 (327)
T PRK10754 1 MAKRIEFHKHGGP-EVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYP---PPSLPSGLGTEAAGVVSKVGSGV 76 (327)
T ss_pred CceEEEEeccCCh-hHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCC---CCCCCCccCcceEEEEEEeCCCC
Confidence 5899999988876 8899999999999999999999999999999988877653 22357789999999999999999
Q ss_pred CccCCCCEEEee
Q 040376 86 NNFCPSRTYFDV 97 (100)
Q Consensus 86 ~~~~~Gd~V~~~ 97 (100)
+.+++||+|++.
T Consensus 77 ~~~~~Gd~V~~~ 88 (327)
T PRK10754 77 KHIKVGDRVVYA 88 (327)
T ss_pred CCCCCCCEEEEC
Confidence 999999999754
No 39
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=99.70 E-value=1.7e-16 Score=108.79 Aligned_cols=85 Identities=21% Similarity=0.210 Sum_probs=74.9
Q ss_pred ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376 6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF 85 (100)
Q Consensus 6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v 85 (100)
+||++++...++. +++++.+.|.+.++||+||+.++++|++|++...|.+. ..+|.++|||++|+|+++|+++
T Consensus 7 ~~~a~~~~~~~~~---~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~----~~~p~v~G~e~~G~V~~vG~~v 79 (373)
T cd08299 7 KCKAAVLWEPKKP---FSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV----TPFPVILGHEAAGIVESVGEGV 79 (373)
T ss_pred eeEEEEEecCCCC---cEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC----CCCCccccccceEEEEEeCCCC
Confidence 5889888876554 88899999999999999999999999999999887642 2467899999999999999999
Q ss_pred CccCCCCEEEee
Q 040376 86 NNFCPSRTYFDV 97 (100)
Q Consensus 86 ~~~~~Gd~V~~~ 97 (100)
+.|++||+|+++
T Consensus 80 ~~~~~Gd~V~~~ 91 (373)
T cd08299 80 TTVKPGDKVIPL 91 (373)
T ss_pred ccCCCCCEEEEC
Confidence 999999999875
No 40
>PRK10083 putative oxidoreductase; Provisional
Probab=99.70 E-value=1.9e-16 Score=106.68 Aligned_cols=82 Identities=21% Similarity=0.238 Sum_probs=72.2
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
|||+++.++ ..+++++.+.|.|.++|++||+.++++|+.|+....|.++ ...+|.++|||++|+|+++|++++
T Consensus 1 m~a~~~~~~----~~~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~---~~~~p~i~G~e~~G~V~~vG~~v~ 73 (339)
T PRK10083 1 MKSIVIEKP----NSLAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNP---FAKYPRVIGHEFFGVIDAVGEGVD 73 (339)
T ss_pred CeEEEEecC----CeeEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCC---cCCCCcccccceEEEEEEECCCCc
Confidence 688888764 4488999999999999999999999999999998877653 224688999999999999999999
Q ss_pred ccCCCCEEE
Q 040376 87 NFCPSRTYF 95 (100)
Q Consensus 87 ~~~~Gd~V~ 95 (100)
.|++||+|+
T Consensus 74 ~~~~Gd~V~ 82 (339)
T PRK10083 74 AARIGERVA 82 (339)
T ss_pred cCCCCCEEE
Confidence 999999997
No 41
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=99.70 E-value=2.5e-16 Score=106.13 Aligned_cols=84 Identities=30% Similarity=0.340 Sum_probs=73.4
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
|||+++.++++. +++++.+.|.+.++||+|++.++++|+.|+....|..+ ...+|.++|+|++|+|+++|++++
T Consensus 1 m~a~~~~~~~~~---~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~---~~~~p~~~g~e~~G~v~~vG~~v~ 74 (333)
T cd08296 1 YKAVQVTEPGGP---LELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMP---GLSYPRVPGHEVVGRIDAVGEGVS 74 (333)
T ss_pred CeEEEEccCCCC---ceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCC---CCCCCcccCcceeEEEEEECCCCc
Confidence 799999876543 88899999999999999999999999999998887553 224578899999999999999999
Q ss_pred ccCCCCEEEe
Q 040376 87 NFCPSRTYFD 96 (100)
Q Consensus 87 ~~~~Gd~V~~ 96 (100)
+|++||+|++
T Consensus 75 ~~~~Gd~V~~ 84 (333)
T cd08296 75 RWKVGDRVGV 84 (333)
T ss_pred cCCCCCEEEe
Confidence 9999999976
No 42
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=99.70 E-value=1.2e-16 Score=108.96 Aligned_cols=84 Identities=21% Similarity=0.171 Sum_probs=66.0
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCc-cccccceEEEEeecCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPC-IPGILVLPLIFCELESF 85 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~-~~G~e~~G~V~~vG~~v 85 (100)
|+++++...... .++++.+.|.+.++||+||+.++|||.+|++.+++..+ ....+. ++|||++|+|+++| .+
T Consensus 1 m~a~~~~~~~~~---~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~---~~~~~~~i~GHE~~G~V~evG-~~ 73 (350)
T COG1063 1 MKAAVVYVGGGD---VRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEP---FVPPGDIILGHEFVGEVVEVG-VV 73 (350)
T ss_pred CceeEEEecCCc---cccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCC---CCCCCCcccCccceEEEEEec-cc
Confidence 566666654432 33666666678999999999999999999999998754 223334 99999999999999 77
Q ss_pred CccCCCCEEEee
Q 040376 86 NNFCPSRTYFDV 97 (100)
Q Consensus 86 ~~~~~Gd~V~~~ 97 (100)
+.|++||||..-
T Consensus 74 ~~~~~GdrVvv~ 85 (350)
T COG1063 74 RGFKVGDRVVVE 85 (350)
T ss_pred cCCCCCCEEEEC
Confidence 889999999764
No 43
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=99.70 E-value=1.9e-16 Score=107.32 Aligned_cols=86 Identities=17% Similarity=0.150 Sum_probs=71.0
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCC--CC------CCCCCCccccccceEEE
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLR--PF------LPRKFPCIPGILVLPLI 78 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~--~~------~~~~~p~~~G~e~~G~V 78 (100)
|||+++.++ +.+++++.+.|.|.++||+||+.++++|+.|+....+... +. .....|.++|+|++|+|
T Consensus 1 mka~~~~~~----~~l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V 76 (351)
T cd08233 1 MKAARYHGR----KDIRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVV 76 (351)
T ss_pred CceEEEecC----CceEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEE
Confidence 789998763 4488999999999999999999999999999987654311 00 01236789999999999
Q ss_pred EeecCCCCccCCCCEEEe
Q 040376 79 FCELESFNNFCPSRTYFD 96 (100)
Q Consensus 79 ~~vG~~v~~~~~Gd~V~~ 96 (100)
+++|+++++|++||+|++
T Consensus 77 ~~vG~~v~~~~~Gd~V~~ 94 (351)
T cd08233 77 VEVGSGVTGFKVGDRVVV 94 (351)
T ss_pred EEeCCCCCCCCCCCEEEE
Confidence 999999999999999986
No 44
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.70 E-value=4e-16 Score=104.54 Aligned_cols=90 Identities=20% Similarity=0.232 Sum_probs=78.0
Q ss_pred ceeeEEEcccCC--CCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecC
Q 040376 6 LMHAVQYNSYGG--GAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELE 83 (100)
Q Consensus 6 ~~ka~~~~~~~~--~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~ 83 (100)
.||++++.+++. + +.+++++.+.|.+.++|++|++.++++|+.|+....|.+.. ...+|.++|+|++|+|+++|+
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~--~~~~p~~~g~e~~G~v~~vG~ 77 (329)
T cd08250 1 SFRKLVVHRLSPNFR-EATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDP--GVKPPFDCGFEGVGEVVAVGE 77 (329)
T ss_pred CceEEEeccCCCCcc-cCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCC--CCCCCcccCceeEEEEEEECC
Confidence 389999998766 4 66899999999999999999999999999999988876532 235678999999999999999
Q ss_pred CCCccCCCCEEEeec
Q 040376 84 SFNNFCPSRTYFDVY 98 (100)
Q Consensus 84 ~v~~~~~Gd~V~~~~ 98 (100)
+++.|++||+|+++.
T Consensus 78 ~v~~~~~Gd~V~~~~ 92 (329)
T cd08250 78 GVTDFKVGDAVATMS 92 (329)
T ss_pred CCCCCCCCCEEEEec
Confidence 999999999999763
No 45
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=99.69 E-value=1.7e-16 Score=107.09 Aligned_cols=79 Identities=10% Similarity=0.010 Sum_probs=62.6
Q ss_pred CcceEEeeccCCCCC-CCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCccCCCCEEEee
Q 040376 19 AADLKHVELPVPTPS-KDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDV 97 (100)
Q Consensus 19 ~~~~~~~~~~~p~~~-~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~ 97 (100)
++.+++.+.+.|.|. +|||+|||+|+||||.|+.............++|.++|+|++|+|+++|+++++|++||+|+++
T Consensus 20 ~~~~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~ 99 (345)
T cd08293 20 AENFRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSF 99 (345)
T ss_pred ccceEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEec
Confidence 367899999999874 9999999999999999964332111100123467889999999999999999999999999864
No 46
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.69 E-value=3.4e-16 Score=106.04 Aligned_cols=84 Identities=17% Similarity=0.181 Sum_probs=72.7
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
|||+++.+.+ .+.+.+.+.|.+.++||+||+.++++|+.|++...+.+. ....|.++|+|++|+|+++|++++
T Consensus 1 mka~~~~~~~----~~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~---~~~~~~~~G~e~~G~V~~vG~~v~ 73 (351)
T cd08285 1 MKAFAMLGIG----KVGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAP---GERHGMILGHEAVGVVEEVGSEVK 73 (351)
T ss_pred CceEEEccCC----ccEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCC---CCCCCcccCcceEEEEEEecCCcC
Confidence 7899998754 367888888889999999999999999999998877643 235578999999999999999999
Q ss_pred ccCCCCEEEee
Q 040376 87 NFCPSRTYFDV 97 (100)
Q Consensus 87 ~~~~Gd~V~~~ 97 (100)
+|++||+|++.
T Consensus 74 ~~~~Gd~V~~~ 84 (351)
T cd08285 74 DFKPGDRVIVP 84 (351)
T ss_pred ccCCCCEEEEc
Confidence 99999999873
No 47
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=99.69 E-value=4.3e-16 Score=104.12 Aligned_cols=86 Identities=27% Similarity=0.326 Sum_probs=74.2
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
||++++...+ +.+.+.+.+.|.+.+++|+|++.++++|+.|+....|.++ ....|.++|+|++|+|+++|++++
T Consensus 1 m~a~~~~~~~---~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~---~~~~~~~~g~e~~G~v~~~G~~v~ 74 (332)
T cd08259 1 MKAAILHKPN---KPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFP---RGKYPLILGHEIVGTVEEVGEGVE 74 (332)
T ss_pred CeEEEEecCC---CceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCC---CCCCCeeccccceEEEEEECCCCc
Confidence 6888887633 4488899999999999999999999999999999887654 234578999999999999999999
Q ss_pred ccCCCCEEEeec
Q 040376 87 NFCPSRTYFDVY 98 (100)
Q Consensus 87 ~~~~Gd~V~~~~ 98 (100)
.|++||+|+++.
T Consensus 75 ~~~~Gd~V~~~~ 86 (332)
T cd08259 75 RFKPGDRVILYY 86 (332)
T ss_pred cCCCCCEEEECC
Confidence 999999999864
No 48
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=99.69 E-value=6.6e-16 Score=103.27 Aligned_cols=90 Identities=27% Similarity=0.387 Sum_probs=76.6
Q ss_pred ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376 6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF 85 (100)
Q Consensus 6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v 85 (100)
||||+++.+.+.. ..+.+++.+.|.+.++|++||+.++++|+.|+....+.+.. ....|.++|+|++|+|+++|+++
T Consensus 1 ~m~a~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~vG~~v 77 (334)
T PTZ00354 1 MMRAVTLKGFGGV-DVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPP--PPGSSEILGLEVAGYVEDVGSDV 77 (334)
T ss_pred CcEEEEEEecCCC-cceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC--CCCCCcccceeeEEEEEEeCCCC
Confidence 5999999987765 66888888888889999999999999999999888775431 23446789999999999999999
Q ss_pred CccCCCCEEEeec
Q 040376 86 NNFCPSRTYFDVY 98 (100)
Q Consensus 86 ~~~~~Gd~V~~~~ 98 (100)
+.|++||+|+++.
T Consensus 78 ~~~~~Gd~V~~~~ 90 (334)
T PTZ00354 78 KRFKEGDRVMALL 90 (334)
T ss_pred CCCCCCCEEEEec
Confidence 9999999999863
No 49
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=99.68 E-value=4e-16 Score=107.26 Aligned_cols=84 Identities=18% Similarity=0.186 Sum_probs=73.3
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCC-CCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTP-SKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF 85 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v 85 (100)
|||+++.+. +.+++.+.+.|.| .+++|+||+.++++|++|+....|.++. .++|.++|+|++|+|+++|+++
T Consensus 1 m~a~~~~~~----~~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~---~~~p~~~G~e~~G~V~~vG~~v 73 (386)
T cd08283 1 MKALVWHGK----GDVRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPG---MKKGDILGHEFMGVVEEVGPEV 73 (386)
T ss_pred CeeEEEecC----CCceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCC---CCCCccccccceEEEEEeCCCC
Confidence 788888743 5588999999888 4999999999999999999999887642 3467899999999999999999
Q ss_pred CccCCCCEEEee
Q 040376 86 NNFCPSRTYFDV 97 (100)
Q Consensus 86 ~~~~~Gd~V~~~ 97 (100)
++|++||+|+++
T Consensus 74 ~~~~~Gd~V~~~ 85 (386)
T cd08283 74 RNLKVGDRVVVP 85 (386)
T ss_pred CCCCCCCEEEEc
Confidence 999999999875
No 50
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=99.68 E-value=9.2e-16 Score=102.33 Aligned_cols=91 Identities=20% Similarity=0.278 Sum_probs=75.8
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
|||+.+++.+.+ ..+.+.+.+.|.+.+++|+|++.++++|+.|+....|.........+|.++|+|++|+|+++|+++.
T Consensus 1 ~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~ 79 (324)
T cd08244 1 MRAIRLHEFGPP-EVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVD 79 (324)
T ss_pred CeEEEEcCCCCc-cceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCC
Confidence 689998876665 6678877777778999999999999999999998877643212234578899999999999999999
Q ss_pred ccCCCCEEEeec
Q 040376 87 NFCPSRTYFDVY 98 (100)
Q Consensus 87 ~~~~Gd~V~~~~ 98 (100)
.|++||+|+++.
T Consensus 80 ~~~~Gd~V~~~~ 91 (324)
T cd08244 80 PAWLGRRVVAHT 91 (324)
T ss_pred CCCCCCEEEEcc
Confidence 999999999864
No 51
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=99.68 E-value=5.4e-16 Score=105.68 Aligned_cols=84 Identities=20% Similarity=0.240 Sum_probs=74.6
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
|||+++.+++.+ +++.+.+.|.+.+++|+|++.++++|+.|+....|.++ ..+|.++|+|++|+|+++|++++
T Consensus 1 m~a~~~~~~~~~---~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~----~~~~~~~g~e~~G~V~~vG~~v~ 73 (363)
T cd08279 1 MRAAVLHEVGKP---LEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP----APLPAVLGHEGAGVVEEVGPGVT 73 (363)
T ss_pred CeEEEEecCCCC---ceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC----CCCCccccccceEEEEEeCCCcc
Confidence 799999987755 88889999999999999999999999999998887653 34567899999999999999999
Q ss_pred ccCCCCEEEee
Q 040376 87 NFCPSRTYFDV 97 (100)
Q Consensus 87 ~~~~Gd~V~~~ 97 (100)
.|++||+|+++
T Consensus 74 ~~~~Gd~V~~~ 84 (363)
T cd08279 74 GVKPGDHVVLS 84 (363)
T ss_pred ccCCCCEEEEC
Confidence 99999999984
No 52
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=99.67 E-value=7.3e-16 Score=103.53 Aligned_cols=85 Identities=28% Similarity=0.362 Sum_probs=74.6
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
||++++.+++.+ +++++.+.|.+.++|++|++.++++|+.|+....|.++ ..++|.++|+|++|+|+++|++++
T Consensus 1 m~a~~~~~~~~~---~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~---~~~~~~~~g~e~~G~v~~~g~~~~ 74 (334)
T PRK13771 1 MKAVILPGFKQG---YRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYP---RMKYPVILGHEVVGTVEEVGENVK 74 (334)
T ss_pred CeeEEEcCCCCC---cEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCC---CCCCCeeccccceEEEEEeCCCCc
Confidence 689998877654 88999999999999999999999999999988877653 235578899999999999999998
Q ss_pred ccCCCCEEEee
Q 040376 87 NFCPSRTYFDV 97 (100)
Q Consensus 87 ~~~~Gd~V~~~ 97 (100)
.|++||+|+++
T Consensus 75 ~~~~G~~V~~~ 85 (334)
T PRK13771 75 GFKPGDRVASL 85 (334)
T ss_pred cCCCCCEEEEC
Confidence 89999999886
No 53
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=99.67 E-value=7.4e-16 Score=103.87 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=72.7
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCC-CCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTP-SKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF 85 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v 85 (100)
||++++.++ +.+.+.+.+.|.| .+++|+||+.++++|+.|+....|.++ ...+|.++|+|++|+|+++|+++
T Consensus 1 ~ka~~~~~~----~~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~---~~~~~~~~g~e~~G~V~~vG~~v 73 (347)
T cd05278 1 MKALVYLGP----GKIGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVP---GAKHGMILGHEFVGEVVEVGSDV 73 (347)
T ss_pred CceEEEecC----CceEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCC---CCCCCceeccceEEEEEEECCCc
Confidence 688888764 3478889999999 899999999999999999999888764 24567899999999999999999
Q ss_pred CccCCCCEEEe
Q 040376 86 NNFCPSRTYFD 96 (100)
Q Consensus 86 ~~~~~Gd~V~~ 96 (100)
++|++||+|++
T Consensus 74 ~~~~~Gd~V~~ 84 (347)
T cd05278 74 KRLKPGDRVSV 84 (347)
T ss_pred cccCCCCEEEe
Confidence 99999999987
No 54
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=99.67 E-value=1e-15 Score=102.18 Aligned_cols=86 Identities=21% Similarity=0.285 Sum_probs=73.9
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
|||+++++++++ +.+++++.+.|.+.+++|+|++.++++|+.|+....|.++. ...+|.++|+|++|+|+++ +++
T Consensus 1 ~~a~~~~~~~~~-~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~--~~~ 75 (325)
T cd05280 1 FKALVVEEQDGG-VSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGV--TRNYPHTPGIDAAGTVVSS--DDP 75 (325)
T ss_pred CceEEEcccCCC-CcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCC--CCCCCCccCcccEEEEEEe--CCC
Confidence 789999988764 67999999999999999999999999999999998876531 2345778999999999998 467
Q ss_pred ccCCCCEEEee
Q 040376 87 NFCPSRTYFDV 97 (100)
Q Consensus 87 ~~~~Gd~V~~~ 97 (100)
.|++||+|++.
T Consensus 76 ~~~~Gd~V~~~ 86 (325)
T cd05280 76 RFREGDEVLVT 86 (325)
T ss_pred CCCCCCEEEEc
Confidence 89999999874
No 55
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=99.67 E-value=8.5e-16 Score=104.01 Aligned_cols=88 Identities=22% Similarity=0.208 Sum_probs=73.7
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCC---------CCCCCCccccccceEE
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPF---------LPRKFPCIPGILVLPL 77 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~---------~~~~~p~~~G~e~~G~ 77 (100)
||++++...+.+ +++.+.+.|++.++||+|++.++++|+.|++...+.++.. ....+|.++|+|++|+
T Consensus 1 ~~a~~~~~~~~~---~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~ 77 (350)
T cd08240 1 MKAAAVVEPGKP---LEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGE 77 (350)
T ss_pred CeeEEeccCCCC---ceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEE
Confidence 789988876654 7888999999999999999999999999999988754210 0123467899999999
Q ss_pred EEeecCCCCccCCCCEEEee
Q 040376 78 IFCELESFNNFCPSRTYFDV 97 (100)
Q Consensus 78 V~~vG~~v~~~~~Gd~V~~~ 97 (100)
|+++|++++.|++||+|+++
T Consensus 78 V~~vG~~v~~~~~Gd~V~~~ 97 (350)
T cd08240 78 VVAVGPDAADVKVGDKVLVY 97 (350)
T ss_pred EEeeCCCCCCCCCCCEEEEC
Confidence 99999999999999999875
No 56
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.67 E-value=5.7e-16 Score=105.16 Aligned_cols=81 Identities=10% Similarity=0.110 Sum_probs=66.8
Q ss_pred EEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCccC
Q 040376 10 VQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFC 89 (100)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (100)
+++.+++.+ +++++.+.|.+.++||+||+.++++|++|++...+.+.. ...+|.++|||++|+|+++|+++..+
T Consensus 2 ~~~~~~g~~---~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~--~~~~p~i~GhE~~G~V~~vG~~v~~~- 75 (349)
T TIGR03201 2 WMMTEPGKP---MVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRT--NHALPLALGHEISGRVIQAGAGAASW- 75 (349)
T ss_pred ceEecCCCC---ceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCc--cCCCCeeccccceEEEEEeCCCcCCC-
Confidence 345555544 788899999999999999999999999999887544321 23568899999999999999999887
Q ss_pred CCCEEEe
Q 040376 90 PSRTYFD 96 (100)
Q Consensus 90 ~Gd~V~~ 96 (100)
+||+|+.
T Consensus 76 ~GdrV~~ 82 (349)
T TIGR03201 76 IGKAVIV 82 (349)
T ss_pred CCCEEEE
Confidence 9999976
No 57
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=99.66 E-value=1.3e-15 Score=102.83 Aligned_cols=84 Identities=24% Similarity=0.376 Sum_probs=74.4
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
|||+++.+++.+ +++.+.+.|.+.+++++|++.++++|+.|+....|... ...+|.++|+|++|+|+++|++++
T Consensus 1 m~a~~~~~~~~~---~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~---~~~~~~~~g~e~~G~V~~~G~~~~ 74 (345)
T cd08260 1 MRAAVYEEFGEP---LEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDP---DVTLPHVPGHEFAGVVVEVGEDVS 74 (345)
T ss_pred CeeEEEecCCCC---cEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCC---CCCCCeeeccceeEEEEEECCCCc
Confidence 799999887765 88889998999999999999999999999998887654 234578999999999999999999
Q ss_pred ccCCCCEEEe
Q 040376 87 NFCPSRTYFD 96 (100)
Q Consensus 87 ~~~~Gd~V~~ 96 (100)
.|++||+|++
T Consensus 75 ~~~~Gd~V~~ 84 (345)
T cd08260 75 RWRVGDRVTV 84 (345)
T ss_pred cCCCCCEEEE
Confidence 9999999986
No 58
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.66 E-value=1.2e-15 Score=102.91 Aligned_cols=90 Identities=26% Similarity=0.310 Sum_probs=72.5
Q ss_pred eeeEEEcccCCCCcceEEee-ccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCC-----------------CCCCCCCc
Q 040376 7 MHAVQYNSYGGGAADLKHVE-LPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRP-----------------FLPRKFPC 68 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~-~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~-----------------~~~~~~p~ 68 (100)
||++.+...+.+ +.+.+.+ .+.|.+.+++|+||+.++++|+.|+....|.++. .....+|.
T Consensus 1 ~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 79 (350)
T cd08274 1 MRAVLLTGHGGL-DKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPR 79 (350)
T ss_pred CeEEEEeccCCc-cceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCc
Confidence 688888776654 5566654 4677789999999999999999999988775431 01234678
Q ss_pred cccccceEEEEeecCCCCccCCCCEEEee
Q 040376 69 IPGILVLPLIFCELESFNNFCPSRTYFDV 97 (100)
Q Consensus 69 ~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~ 97 (100)
++|||++|+|+++|+++++|++||+|++.
T Consensus 80 ~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~ 108 (350)
T cd08274 80 IQGADIVGRVVAVGEGVDTARIGERVLVD 108 (350)
T ss_pred ccCCcceEEEEEeCCCCCCCCCCCEEEEe
Confidence 99999999999999999999999999873
No 59
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.66 E-value=9.3e-16 Score=103.50 Aligned_cols=91 Identities=24% Similarity=0.281 Sum_probs=74.6
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCC-CCCcEEEEEeEeeeChhhHHHHhCCCCC-------C-----CCCCCCcccccc
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTP-SKDEVLLKLEATALNPVDWKIQKGQLRP-------F-----LPRKFPCIPGIL 73 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~-------~-----~~~~~p~~~G~e 73 (100)
|||+++.+++++.+.+.+++.+.|.| .++||+|++.++++|+.|+....|.... . ....+|.++|+|
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e 80 (350)
T cd08248 1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD 80 (350)
T ss_pred CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence 78888888776523478889999999 4999999999999999999988764210 0 023457899999
Q ss_pred ceEEEEeecCCCCccCCCCEEEee
Q 040376 74 VLPLIFCELESFNNFCPSRTYFDV 97 (100)
Q Consensus 74 ~~G~V~~vG~~v~~~~~Gd~V~~~ 97 (100)
++|+|+++|+++++|++||+|+++
T Consensus 81 ~~G~v~~vG~~v~~~~~Gd~V~~~ 104 (350)
T cd08248 81 CSGVVVDIGSGVKSFEIGDEVWGA 104 (350)
T ss_pred eEEEEEecCCCcccCCCCCEEEEe
Confidence 999999999999999999999875
No 60
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.66 E-value=1.9e-15 Score=101.16 Aligned_cols=88 Identities=23% Similarity=0.306 Sum_probs=77.0
Q ss_pred eeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCc
Q 040376 8 HAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNN 87 (100)
Q Consensus 8 ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 87 (100)
|++.+.+.+.+ +.+++++.+.|.|.+++++|++.++++|+.|+....|.+.. ...+|.++|+|++|+|+++|++++.
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~vG~~v~~ 78 (331)
T cd08273 2 REVVVTRRGGP-EVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPD--QPPLPFTPGYDLVGRVDALGSGVTG 78 (331)
T ss_pred eeEEEccCCCc-ccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCC--CCCCCcccccceEEEEEEeCCCCcc
Confidence 78888887776 78999999999999999999999999999999988876532 2246788999999999999999999
Q ss_pred cCCCCEEEeec
Q 040376 88 FCPSRTYFDVY 98 (100)
Q Consensus 88 ~~~Gd~V~~~~ 98 (100)
|++||+|+++.
T Consensus 79 ~~~Gd~V~~~~ 89 (331)
T cd08273 79 FEVGDRVAALT 89 (331)
T ss_pred CCCCCEEEEeC
Confidence 99999999864
No 61
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=99.66 E-value=1.2e-15 Score=103.11 Aligned_cols=84 Identities=20% Similarity=0.211 Sum_probs=72.2
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCC-CCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTP-SKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF 85 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v 85 (100)
||++++.+.+ .+++++.+.|.| .++||+|++.++++|+.|+....|.+.. ..+|.++|+|++|+|+++|+++
T Consensus 1 m~a~~~~~~~----~~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~---~~~~~~~g~e~~G~V~~~G~~v 73 (345)
T cd08286 1 MKALVYHGPG----KISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPT---VTPGRILGHEGVGVVEEVGSAV 73 (345)
T ss_pred CceEEEecCC----ceeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCC---CCCCceecccceEEEEEeccCc
Confidence 6888887643 488889999886 7999999999999999999998887542 2347899999999999999999
Q ss_pred CccCCCCEEEee
Q 040376 86 NNFCPSRTYFDV 97 (100)
Q Consensus 86 ~~~~~Gd~V~~~ 97 (100)
+.|++||+|++.
T Consensus 74 ~~~~~Gd~V~~~ 85 (345)
T cd08286 74 TNFKVGDRVLIS 85 (345)
T ss_pred cccCCCCEEEEC
Confidence 999999999874
No 62
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=99.66 E-value=1.2e-15 Score=103.30 Aligned_cols=86 Identities=27% Similarity=0.284 Sum_probs=71.7
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCC------CCCCCCccccccceEEEEe
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPF------LPRKFPCIPGILVLPLIFC 80 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~------~~~~~p~~~G~e~~G~V~~ 80 (100)
|||+++.++ ..+++++.+.|++.+++|+||+.++++|+.|+....|.+... ....+|.++|+|++|+|++
T Consensus 1 mka~~~~~~----~~~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~ 76 (350)
T cd08256 1 MRAVVCHGP----QDYRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVE 76 (350)
T ss_pred CeeEEEecC----CceEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEE
Confidence 689998754 348899999999999999999999999999999887753110 0114577899999999999
Q ss_pred ecCCCC--ccCCCCEEEe
Q 040376 81 ELESFN--NFCPSRTYFD 96 (100)
Q Consensus 81 vG~~v~--~~~~Gd~V~~ 96 (100)
+|++++ +|++||+|++
T Consensus 77 vG~~v~~~~~~~Gd~V~~ 94 (350)
T cd08256 77 LGEGAEERGVKVGDRVIS 94 (350)
T ss_pred eCCCcccCCCCCCCEEEE
Confidence 999999 8999999987
No 63
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=99.66 E-value=1.7e-15 Score=101.29 Aligned_cols=86 Identities=23% Similarity=0.298 Sum_probs=73.7
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
||+++..+. .+ ..+++++.+.|.+.+++|+|++.++++|+.|+....+.+. ....|.++|+|++|+|+++|++++
T Consensus 1 ~~~~~~~~~-~~-~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~ 75 (306)
T cd08258 1 MKALVKTGP-GP-GNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYD---PVETPVVLGHEFSGTIVEVGPDVE 75 (306)
T ss_pred CeeEEEecC-CC-CceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCC---cCCCCeeeccceEEEEEEECCCcC
Confidence 578887763 33 5689999999999999999999999999999988877652 234568899999999999999999
Q ss_pred ccCCCCEEEee
Q 040376 87 NFCPSRTYFDV 97 (100)
Q Consensus 87 ~~~~Gd~V~~~ 97 (100)
.|++||+|+++
T Consensus 76 ~~~~Gd~V~~~ 86 (306)
T cd08258 76 GWKVGDRVVSE 86 (306)
T ss_pred cCCCCCEEEEc
Confidence 99999999885
No 64
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=99.65 E-value=1.6e-15 Score=101.99 Aligned_cols=83 Identities=18% Similarity=0.090 Sum_probs=71.3
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
||++++++.+.. ..+++.+.|.+.++|++||+.++++|+.|+....|.++ ...|.++|+|++|+|+++|++++
T Consensus 1 mka~~~~~~~~~---~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~----~~~~~~~g~e~~G~V~~~G~~v~ 73 (338)
T PRK09422 1 MKAAVVNKDHTG---DVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFG----DKTGRILGHEGIGIVKEVGPGVT 73 (338)
T ss_pred CeEEEecCCCCC---ceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCC----CCCCccCCcccceEEEEECCCCc
Confidence 789999886554 33788899999999999999999999999998877643 12367899999999999999999
Q ss_pred ccCCCCEEEe
Q 040376 87 NFCPSRTYFD 96 (100)
Q Consensus 87 ~~~~Gd~V~~ 96 (100)
.|++||+|++
T Consensus 74 ~~~~Gd~V~~ 83 (338)
T PRK09422 74 SLKVGDRVSI 83 (338)
T ss_pred cCCCCCEEEE
Confidence 9999999986
No 65
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=99.65 E-value=1.7e-15 Score=103.78 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=71.3
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCC-CCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTP-SKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF 85 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v 85 (100)
||++++.++ ..+++++.+.|.+ .++|++||+.++++|+.|++...|.+. ..+|.++|||++|+|+++|+++
T Consensus 1 m~~~~~~~~----~~~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~----~~~p~~~g~e~~G~V~~vG~~v 72 (375)
T cd08282 1 MKAVVYGGP----GNVAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG----AEPGLVLGHEAMGEVEEVGSAV 72 (375)
T ss_pred CceEEEecC----CceeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC----CCCCceeccccEEEEEEeCCCC
Confidence 578887653 3488999999996 799999999999999999999887653 2457899999999999999999
Q ss_pred CccCCCCEEEe
Q 040376 86 NNFCPSRTYFD 96 (100)
Q Consensus 86 ~~~~~Gd~V~~ 96 (100)
..|++||+|++
T Consensus 73 ~~~~~Gd~V~~ 83 (375)
T cd08282 73 ESLKVGDRVVV 83 (375)
T ss_pred CcCCCCCEEEE
Confidence 99999999986
No 66
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=99.65 E-value=1.5e-15 Score=103.64 Aligned_cols=84 Identities=21% Similarity=0.278 Sum_probs=73.5
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
||++++.+.+.+ +++.+.+.|.+.++||+|++.++++|+.|+....+.++ ..+|.++|+|++|+|+++|++++
T Consensus 1 ~~a~~~~~~~~~---~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~----~~~p~~~g~e~~G~v~~vG~~~~ 73 (367)
T cd08263 1 MKAAVLKGPNPP---LTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELP----FPPPFVLGHEISGEVVEVGPNVE 73 (367)
T ss_pred CeeEEEecCCCC---cEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCC----CCCCcccccccceEEEEeCCCCC
Confidence 689999877544 78888898889999999999999999999998887653 25678999999999999999998
Q ss_pred c---cCCCCEEEee
Q 040376 87 N---FCPSRTYFDV 97 (100)
Q Consensus 87 ~---~~~Gd~V~~~ 97 (100)
+ |++||+|+++
T Consensus 74 ~~~~~~~Gd~V~~~ 87 (367)
T cd08263 74 NPYGLSVGDRVVGS 87 (367)
T ss_pred CCCcCCCCCEEEEc
Confidence 8 9999999884
No 67
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.65 E-value=2e-15 Score=101.70 Aligned_cols=87 Identities=23% Similarity=0.273 Sum_probs=74.9
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
|||+++.+++ + ..+++.+.+.|.+.++|++|++.++++|+.|+....+.++. ....+..+|+|++|+|+++|++++
T Consensus 1 m~a~~~~~~~-~-~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~V~~vG~~~~ 76 (341)
T cd08297 1 MKAAVVEEFG-E-KPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPV--KPKLPLIGGHEGAGVVVAVGPGVS 76 (341)
T ss_pred CceEEeeccC-C-CCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCc--CCCCCccCCcccceEEEEeCCCCC
Confidence 7899998766 3 56899999999999999999999999999999988776542 234567889999999999999999
Q ss_pred ccCCCCEEEee
Q 040376 87 NFCPSRTYFDV 97 (100)
Q Consensus 87 ~~~~Gd~V~~~ 97 (100)
.|++||+|+++
T Consensus 77 ~~~~Gd~V~~~ 87 (341)
T cd08297 77 GLKVGDRVGVK 87 (341)
T ss_pred CCCCCCEEEEe
Confidence 99999999864
No 68
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=99.65 E-value=1.5e-15 Score=104.79 Aligned_cols=96 Identities=16% Similarity=0.108 Sum_probs=75.9
Q ss_pred cccceeeEEEcc--cCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCC------C-CCCCC-ccccc
Q 040376 3 GKPLMHAVQYNS--YGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPF------L-PRKFP-CIPGI 72 (100)
Q Consensus 3 ~~~~~ka~~~~~--~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~------~-~~~~p-~~~G~ 72 (100)
++++|||+++.. ++++.+.+++.+.+.|.+.+++++|++.++++|+.|.+...+...+. . ....| .++|+
T Consensus 4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~ 83 (398)
T TIGR01751 4 VPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGS 83 (398)
T ss_pred cchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceeccc
Confidence 356799999954 66654679999999999999999999999999999987765532110 0 01123 37999
Q ss_pred cceEEEEeecCCCCccCCCCEEEeec
Q 040376 73 LVLPLIFCELESFNNFCPSRTYFDVY 98 (100)
Q Consensus 73 e~~G~V~~vG~~v~~~~~Gd~V~~~~ 98 (100)
|++|+|+++|++++.|++||+|++.+
T Consensus 84 e~~G~V~~vG~~v~~~~~Gd~V~~~~ 109 (398)
T TIGR01751 84 DASGVVWRVGPGVTRWKVGDEVVASC 109 (398)
T ss_pred ceEEEEEEeCCCCCCCCCCCEEEEcc
Confidence 99999999999999999999998753
No 69
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.65 E-value=3.6e-15 Score=99.72 Aligned_cols=89 Identities=33% Similarity=0.392 Sum_probs=76.3
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
|||+++...+.. +.+++++.+.|.+.++|++|++.++++|+.|+....|.+.. ....|.++|+|++|+|+++|+++.
T Consensus 1 ~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~G~~~~ 77 (336)
T cd08276 1 MKAWRLSGGGGL-DNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPP--PVKDPLIPLSDGAGEVVAVGEGVT 77 (336)
T ss_pred CeEEEEeccCCC-cceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCC--CCCCCcccccceeEEEEEeCCCCc
Confidence 789999877654 66888888888889999999999999999999988776542 234678899999999999999999
Q ss_pred ccCCCCEEEeec
Q 040376 87 NFCPSRTYFDVY 98 (100)
Q Consensus 87 ~~~~Gd~V~~~~ 98 (100)
+|++||+|++..
T Consensus 78 ~~~~Gd~V~~~~ 89 (336)
T cd08276 78 RFKVGDRVVPTF 89 (336)
T ss_pred CCCCCCEEEEec
Confidence 999999998753
No 70
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=99.64 E-value=2.2e-15 Score=101.45 Aligned_cols=83 Identities=20% Similarity=0.255 Sum_probs=72.3
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
|||++++++ ..+++.+.+.|.+.++|++|++.++++|+.|+....+.++. ..+|.++|+|++|+|+++|++++
T Consensus 1 ~~a~~~~~~----~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~---~~~~~~~g~e~~G~V~~~G~~v~ 73 (337)
T cd08261 1 MKALVCEKP----GRLEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPF---ASYPRILGHELSGEVVEVGEGVA 73 (337)
T ss_pred CeEEEEeCC----CceEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCc---CCCCcccccccEEEEEEeCCCCC
Confidence 688888764 34888999999999999999999999999999998876542 24577899999999999999999
Q ss_pred ccCCCCEEEe
Q 040376 87 NFCPSRTYFD 96 (100)
Q Consensus 87 ~~~~Gd~V~~ 96 (100)
.|++||+|++
T Consensus 74 ~~~~Gd~V~~ 83 (337)
T cd08261 74 GLKVGDRVVV 83 (337)
T ss_pred CCCCCCEEEE
Confidence 9999999987
No 71
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=99.64 E-value=8.3e-16 Score=103.88 Aligned_cols=86 Identities=33% Similarity=0.436 Sum_probs=74.2
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
|||+++..++ + ..+++++.+.|.++++||+|++.++++|+.|+....+.+ ....+.++|+|++|+|+++|++++
T Consensus 1 m~a~~~~~~~-~-~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~----~~~~~~~~g~e~~G~v~~vG~~v~ 74 (339)
T cd08249 1 QKAAVLTGPG-G-GLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF----IPSYPAILGCDFAGTVVEVGSGVT 74 (339)
T ss_pred CceEEeccCC-C-CcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeeccc----ccCCCceeeeeeeEEEEEeCCCcC
Confidence 6899998876 4 778999999999999999999999999999988765543 123467899999999999999999
Q ss_pred ccCCCCEEEeec
Q 040376 87 NFCPSRTYFDVY 98 (100)
Q Consensus 87 ~~~~Gd~V~~~~ 98 (100)
.|++||+|+++.
T Consensus 75 ~~~~Gd~V~~~~ 86 (339)
T cd08249 75 RFKVGDRVAGFV 86 (339)
T ss_pred cCCCCCEEEEEe
Confidence 999999999874
No 72
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=99.64 E-value=2.3e-15 Score=101.42 Aligned_cols=84 Identities=27% Similarity=0.303 Sum_probs=72.6
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
||++++++++ .+.+++.+.|.+.+++|+|+++++++|+.|+....+.+. ....|.++|+|++|+|+++|++++
T Consensus 1 ~~~~~~~~~~----~~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~---~~~~~~~~g~~~~G~V~~~G~~v~ 73 (343)
T cd08235 1 MKAAVLHGPN----DVRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHT---DLKPPRILGHEIAGEIVEVGDGVT 73 (343)
T ss_pred CeEEEEecCC----ceEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCc---cCCCCcccccceEEEEEeeCCCCC
Confidence 6899888754 388889999889999999999999999999998877653 224467899999999999999999
Q ss_pred ccCCCCEEEee
Q 040376 87 NFCPSRTYFDV 97 (100)
Q Consensus 87 ~~~~Gd~V~~~ 97 (100)
.|++||+|+++
T Consensus 74 ~~~~Gd~V~~~ 84 (343)
T cd08235 74 GFKVGDRVFVA 84 (343)
T ss_pred CCCCCCEEEEc
Confidence 99999999976
No 73
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=99.64 E-value=3.2e-15 Score=99.83 Aligned_cols=88 Identities=28% Similarity=0.338 Sum_probs=74.6
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
||++++...+.+ ..+.+.+.+.|.+.+++|+|++.++++|+.|+....|.... ...+|.++|||++|+|+++|+++.
T Consensus 1 ~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~G~~~~ 77 (342)
T cd08266 1 MKAVVIRGHGGP-EVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGI--KLPLPHILGSDGAGVVEAVGPGVT 77 (342)
T ss_pred CeEEEEecCCCc-cceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCC--CCCCCeecccceEEEEEEeCCCCC
Confidence 688888765554 66888888888889999999999999999999988775431 235578999999999999999999
Q ss_pred ccCCCCEEEee
Q 040376 87 NFCPSRTYFDV 97 (100)
Q Consensus 87 ~~~~Gd~V~~~ 97 (100)
.|++||+|++.
T Consensus 78 ~~~~Gd~V~~~ 88 (342)
T cd08266 78 NVKPGQRVVIY 88 (342)
T ss_pred CCCCCCEEEEc
Confidence 99999999875
No 74
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.64 E-value=3.8e-15 Score=98.93 Aligned_cols=89 Identities=27% Similarity=0.438 Sum_probs=76.0
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
||++++...+.+ +.+.+++.+.|.+.+++|+|++.++++|+.|+....+... .....|.++|+|++|+|+++|+++.
T Consensus 1 ~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~--~~~~~~~~~g~e~~G~v~~~G~~~~ 77 (326)
T cd08272 1 MKALVLESFGGP-EVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAA--ARPPLPAILGCDVAGVVEAVGEGVT 77 (326)
T ss_pred CeEEEEccCCCc-hheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCC--CCCCCCcccccceeEEEEEeCCCCC
Confidence 689999887765 6788888888888999999999999999999998777543 1234578899999999999999999
Q ss_pred ccCCCCEEEeec
Q 040376 87 NFCPSRTYFDVY 98 (100)
Q Consensus 87 ~~~~Gd~V~~~~ 98 (100)
+|++||+|++..
T Consensus 78 ~~~~Gd~V~~~~ 89 (326)
T cd08272 78 RFRVGDEVYGCA 89 (326)
T ss_pred CCCCCCEEEEcc
Confidence 999999999863
No 75
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.64 E-value=1.9e-15 Score=102.04 Aligned_cols=82 Identities=16% Similarity=0.164 Sum_probs=71.3
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCC-CCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTP-SKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF 85 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v 85 (100)
||+++++++ ..+++++.+.|.| .++||+||+.++++|+.|+....|.++ ...|.++|||++|+|+++|+++
T Consensus 1 m~~~~~~~~----~~~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~----~~~~~~~g~e~~G~V~~vG~~v 72 (345)
T cd08287 1 MRATVIHGP----GDIRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSP----TRAPAPIGHEFVGVVEEVGSEV 72 (345)
T ss_pred CceeEEecC----CceeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCC----CCCCcccccceEEEEEEeCCCC
Confidence 688888753 3488999999996 899999999999999999988877653 2347899999999999999999
Q ss_pred CccCCCCEEEe
Q 040376 86 NNFCPSRTYFD 96 (100)
Q Consensus 86 ~~~~~Gd~V~~ 96 (100)
..|++||+|++
T Consensus 73 ~~~~~Gd~V~~ 83 (345)
T cd08287 73 TSVKPGDFVIA 83 (345)
T ss_pred CccCCCCEEEe
Confidence 99999999987
No 76
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.64 E-value=2.8e-15 Score=101.06 Aligned_cols=86 Identities=14% Similarity=0.083 Sum_probs=71.4
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCC------C--CCCCCCCccccccceEEE
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLR------P--FLPRKFPCIPGILVLPLI 78 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~------~--~~~~~~p~~~G~e~~G~V 78 (100)
|||+++... . +++++.+.|.+.+++|+|++.++++|+.|+....|... . .....+|.++|+|++|+|
T Consensus 1 m~a~~~~~~--~---~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V 75 (341)
T cd08262 1 MRAAVFRDG--P---LVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEV 75 (341)
T ss_pred CceEEEeCC--c---eEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEE
Confidence 688888753 3 88899999999999999999999999999998877321 0 012235788999999999
Q ss_pred EeecCCCCc-cCCCCEEEee
Q 040376 79 FCELESFNN-FCPSRTYFDV 97 (100)
Q Consensus 79 ~~vG~~v~~-~~~Gd~V~~~ 97 (100)
+++|++++. |++||+|+++
T Consensus 76 ~~vG~~v~~~~~~Gd~V~~~ 95 (341)
T cd08262 76 VDYGPGTERKLKVGTRVTSL 95 (341)
T ss_pred EEeCCCCcCCCCCCCEEEec
Confidence 999999987 9999999986
No 77
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=99.64 E-value=4.8e-15 Score=97.98 Aligned_cols=89 Identities=24% Similarity=0.343 Sum_probs=75.8
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
||++++.+.+.+ ..+++.+.+.|.+.+++++|++.++++|+.|+....+.+.. ...+|.++|+|++|+|+++|+++.
T Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~vg~~~~ 77 (323)
T cd05276 1 MKAIVIKEPGGP-EVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPP--PPGASDILGLEVAGVVVAVGPGVT 77 (323)
T ss_pred CeEEEEecCCCc-ccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCC--CCCCCCcccceeEEEEEeeCCCCC
Confidence 789999877665 67888888877788999999999999999999888765431 334678999999999999999999
Q ss_pred ccCCCCEEEeec
Q 040376 87 NFCPSRTYFDVY 98 (100)
Q Consensus 87 ~~~~Gd~V~~~~ 98 (100)
.|++||+|+++.
T Consensus 78 ~~~~Gd~V~~~~ 89 (323)
T cd05276 78 GWKVGDRVCALL 89 (323)
T ss_pred CCCCCCEEEEec
Confidence 999999998863
No 78
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=99.64 E-value=4.3e-15 Score=99.28 Aligned_cols=86 Identities=22% Similarity=0.251 Sum_probs=73.8
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
|||+++.+.+++ +.+++++.+.|.|.++|++|++.++++|+.|+....|.+.. ...+|.++|+|++|+|++ ++++
T Consensus 1 ~~a~~~~~~~~~-~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~V~~--~~~~ 75 (324)
T cd08288 1 FKALVLEKDDGG-TSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGI--VRTFPLVPGIDLAGTVVE--SSSP 75 (324)
T ss_pred CeeEEEeccCCC-cceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccc--cCCCCCccccceEEEEEe--CCCC
Confidence 789999988776 78999999999999999999999999999999988775421 223567899999999999 7778
Q ss_pred ccCCCCEEEee
Q 040376 87 NFCPSRTYFDV 97 (100)
Q Consensus 87 ~~~~Gd~V~~~ 97 (100)
.|++||+|+++
T Consensus 76 ~~~~Gd~V~~~ 86 (324)
T cd08288 76 RFKPGDRVVLT 86 (324)
T ss_pred CCCCCCEEEEC
Confidence 89999999875
No 79
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.63 E-value=3.7e-15 Score=100.05 Aligned_cols=82 Identities=28% Similarity=0.434 Sum_probs=72.5
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
|||+++.+++ .+++.+.+.|++.++||+||++++++|+.|+....|.+.. .+|.++|+|++|+|+++|++++
T Consensus 1 ~~a~~~~~~~----~~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~----~~p~~~g~~~~G~v~~vG~~v~ 72 (334)
T cd08234 1 MKALVYEGPG----ELEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA----APPLVPGHEFAGVVVAVGSKVT 72 (334)
T ss_pred CeeEEecCCC----ceEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC----CCCcccccceEEEEEEeCCCCC
Confidence 6899887654 4888899999999999999999999999999988886542 3678999999999999999999
Q ss_pred ccCCCCEEEe
Q 040376 87 NFCPSRTYFD 96 (100)
Q Consensus 87 ~~~~Gd~V~~ 96 (100)
.|++||+|++
T Consensus 73 ~~~~Gd~V~~ 82 (334)
T cd08234 73 GFKVGDRVAV 82 (334)
T ss_pred CCCCCCEEEE
Confidence 9999999986
No 80
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.63 E-value=2.7e-15 Score=101.24 Aligned_cols=82 Identities=13% Similarity=0.205 Sum_probs=71.3
Q ss_pred eeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCc
Q 040376 8 HAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNN 87 (100)
Q Consensus 8 ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 87 (100)
|++.++..+ +.+++.+.+.|.+.++|++||+.++++|+.|+....|.+. ...+|.++|+|++|+|+++|+++++
T Consensus 1 ~~~~~~~~~---~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~---~~~~p~~~g~e~~G~V~~vG~~v~~ 74 (337)
T cd05283 1 KGYAARDAS---GKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWG---PTKYPLVPGHEIVGIVVAVGSKVTK 74 (337)
T ss_pred CceEEecCC---CCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcC---CCCCCcccCcceeeEEEEECCCCcc
Confidence 456666654 4599999999999999999999999999999999887653 3356889999999999999999999
Q ss_pred cCCCCEEE
Q 040376 88 FCPSRTYF 95 (100)
Q Consensus 88 ~~~Gd~V~ 95 (100)
|++||+|+
T Consensus 75 ~~~Gd~V~ 82 (337)
T cd05283 75 FKVGDRVG 82 (337)
T ss_pred cCCCCEEE
Confidence 99999997
No 81
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=99.63 E-value=2.9e-15 Score=102.31 Aligned_cols=83 Identities=22% Similarity=0.241 Sum_probs=72.6
Q ss_pred eeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCc
Q 040376 8 HAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNN 87 (100)
Q Consensus 8 ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 87 (100)
||+++.+.+++ +++++.+.|.+.+++++|++.++++|+.|++...+.+. ...|.++|+|++|+|+++|++++.
T Consensus 2 ~a~~~~~~~~~---~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~----~~~~~i~g~e~~G~V~~vG~~v~~ 74 (365)
T cd05279 2 KAAVLWEKGKP---LSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP----TPLPVILGHEGAGIVESIGPGVTT 74 (365)
T ss_pred ceeEEecCCCC---cEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCC----CCCCcccccceeEEEEEeCCCccc
Confidence 67777776554 88999999999999999999999999999998887643 245689999999999999999999
Q ss_pred cCCCCEEEee
Q 040376 88 FCPSRTYFDV 97 (100)
Q Consensus 88 ~~~Gd~V~~~ 97 (100)
|++||+|++.
T Consensus 75 ~~~Gd~Vv~~ 84 (365)
T cd05279 75 LKPGDKVIPL 84 (365)
T ss_pred CCCCCEEEEc
Confidence 9999999876
No 82
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.63 E-value=4.8e-15 Score=98.23 Aligned_cols=83 Identities=18% Similarity=0.188 Sum_probs=71.2
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
||++++.+.+ + ..+++.+.+.|.+.++|++|++.++++|+.|+...... ..+.++|+|++|+|+++|+++.
T Consensus 1 ~~~~~~~~~~-~-~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~-------~~~~~~g~e~~G~v~~~G~~v~ 71 (305)
T cd08270 1 MRALVVDPDA-P-LRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER-------PDGAVPGWDAAGVVERAAADGS 71 (305)
T ss_pred CeEEEEccCC-C-ceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC-------CCCCcccceeEEEEEEeCCCCC
Confidence 6888887754 5 67888899999999999999999999999999876521 2256899999999999999999
Q ss_pred ccCCCCEEEeec
Q 040376 87 NFCPSRTYFDVY 98 (100)
Q Consensus 87 ~~~~Gd~V~~~~ 98 (100)
.|++||+|+++.
T Consensus 72 ~~~~Gd~V~~~~ 83 (305)
T cd08270 72 GPAVGARVVGLG 83 (305)
T ss_pred CCCCCCEEEEec
Confidence 999999999874
No 83
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=99.63 E-value=5.1e-15 Score=98.98 Aligned_cols=85 Identities=20% Similarity=0.219 Sum_probs=73.0
Q ss_pred eeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCc
Q 040376 8 HAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNN 87 (100)
Q Consensus 8 ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 87 (100)
||+++...+++ +.+++++.+.|.+.+++|+||+.++++|+.|+....|.+.. ....|.++|+|++|+|++ .++..
T Consensus 1 ~a~~~~~~~~~-~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~V~~--~~~~~ 75 (323)
T TIGR02823 1 KALVVEKEDGK-VSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGV--VRSYPMIPGIDAAGTVVS--SEDPR 75 (323)
T ss_pred CeEEEccCCCC-cceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCC--CCCCCccceeeeEEEEEe--cCCCC
Confidence 67888887776 78999999999999999999999999999999988876531 234578899999999998 56778
Q ss_pred cCCCCEEEee
Q 040376 88 FCPSRTYFDV 97 (100)
Q Consensus 88 ~~~Gd~V~~~ 97 (100)
|++||+|+++
T Consensus 76 ~~~Gd~V~~~ 85 (323)
T TIGR02823 76 FREGDEVIVT 85 (323)
T ss_pred CCCCCEEEEc
Confidence 9999999875
No 84
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=99.63 E-value=4.6e-15 Score=98.27 Aligned_cols=89 Identities=28% Similarity=0.447 Sum_probs=75.8
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
||++++...+.+ +.+.+.+.+.|.+.+++++|++.++++|+.|+....|.+.. ....|.++|+|++|+|+++|+++.
T Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~g~~~~ 77 (325)
T cd08253 1 MRAIRYHEFGAP-DVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPG--LPPLPYVPGSDGAGVVEAVGEGVD 77 (325)
T ss_pred CceEEEcccCCc-ccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCC--CCCCCeecccceEEEEEeeCCCCC
Confidence 678888876654 66888899988899999999999999999999887775532 235678899999999999999999
Q ss_pred ccCCCCEEEeec
Q 040376 87 NFCPSRTYFDVY 98 (100)
Q Consensus 87 ~~~~Gd~V~~~~ 98 (100)
+|++||+|+++.
T Consensus 78 ~~~~Gd~v~~~~ 89 (325)
T cd08253 78 GLKVGDRVWLTN 89 (325)
T ss_pred CCCCCCEEEEec
Confidence 999999999863
No 85
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=99.63 E-value=3.9e-15 Score=100.40 Aligned_cols=83 Identities=20% Similarity=0.198 Sum_probs=72.4
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
|||+++++.+ .+.+++.+.|++.++|++|++.++++|+.|+....+.+. ...|.++|+|++|+|+++|+++.
T Consensus 1 ~~a~~~~~~~----~l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~----~~~~~~~g~~~~G~V~~~g~~v~ 72 (343)
T cd08236 1 MKALVLTGPG----DLRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGA----YHPPLVLGHEFSGTVEEVGSGVD 72 (343)
T ss_pred CeeEEEecCC----ceeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCC----CCCCcccCcceEEEEEEECCCCC
Confidence 6899998753 378888999999999999999999999999998877542 23467899999999999999999
Q ss_pred ccCCCCEEEee
Q 040376 87 NFCPSRTYFDV 97 (100)
Q Consensus 87 ~~~~Gd~V~~~ 97 (100)
.|++||+|+++
T Consensus 73 ~~~~Gd~V~~~ 83 (343)
T cd08236 73 DLAVGDRVAVN 83 (343)
T ss_pred cCCCCCEEEEc
Confidence 99999999986
No 86
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=99.62 E-value=5.7e-15 Score=99.01 Aligned_cols=86 Identities=26% Similarity=0.307 Sum_probs=74.9
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
||++.+..++.+ . +.+.+.+.|.+.+++|+|++.++++|+.|+....|.+.. ...+|.++|+|++|+|+++|+++.
T Consensus 1 ~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~--~~~~~~~~g~~~~G~v~~~G~~v~ 76 (338)
T cd08254 1 MKAWRFHKGSKG-L-LVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPT--LTKLPLTLGHEIAGTVVEVGAGVT 76 (338)
T ss_pred CeeEEEecCCCC-c-eEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcc--cCCCCEeccccccEEEEEECCCCc
Confidence 789999887766 4 777888888899999999999999999999998876541 335578899999999999999999
Q ss_pred ccCCCCEEEe
Q 040376 87 NFCPSRTYFD 96 (100)
Q Consensus 87 ~~~~Gd~V~~ 96 (100)
.|++||+|++
T Consensus 77 ~~~~Gd~V~~ 86 (338)
T cd08254 77 NFKVGDRVAV 86 (338)
T ss_pred cCCCCCEEEE
Confidence 9999999986
No 87
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.62 E-value=5.7e-15 Score=99.77 Aligned_cols=88 Identities=25% Similarity=0.186 Sum_probs=71.6
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
||+++++..+.. +++.+.+.|.|.++|++|++.++++|+.|+.+..+..........|.++|+|++|+|+++|++++
T Consensus 1 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~ 77 (341)
T cd05281 1 MKAIVKTKAGPG---AELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVT 77 (341)
T ss_pred CcceEEecCCCc---eEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCC
Confidence 688888876543 88899999999999999999999999999887654321001223567899999999999999999
Q ss_pred ccCCCCEEEee
Q 040376 87 NFCPSRTYFDV 97 (100)
Q Consensus 87 ~~~~Gd~V~~~ 97 (100)
.|++||+|+++
T Consensus 78 ~~~~Gd~V~~~ 88 (341)
T cd05281 78 RVKVGDYVSAE 88 (341)
T ss_pred CCCCCCEEEEC
Confidence 99999999875
No 88
>PLN02702 L-idonate 5-dehydrogenase
Probab=99.62 E-value=7.6e-15 Score=100.04 Aligned_cols=77 Identities=14% Similarity=0.047 Sum_probs=64.1
Q ss_pred cceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCccCCCCEEEe
Q 040376 20 ADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFD 96 (100)
Q Consensus 20 ~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~ 96 (100)
+.+++++.+.|.+.++||+||+.++++|+.|+....+.........+|.++|+|++|+|+++|+++++|++||+|++
T Consensus 27 ~~l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~ 103 (364)
T PLN02702 27 NTLKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKHLVVGDRVAL 103 (364)
T ss_pred CceEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEE
Confidence 44888888888899999999999999999999988763211112235778999999999999999999999999986
No 89
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=99.62 E-value=7.6e-15 Score=98.29 Aligned_cols=85 Identities=21% Similarity=0.346 Sum_probs=71.4
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
||++++...+ . +.+++++.+.|.+.++||+|++.++++|+.|+....+.. ...+|.++|+|++|+|+++|++++
T Consensus 1 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~~----~~~~~~~~g~e~~G~v~~vG~~v~ 74 (325)
T cd08264 1 MKALVFEKSG-I-ENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVK----VKPMPHIPGAEFAGVVEEVGDHVK 74 (325)
T ss_pred CeeEEeccCC-C-CceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCCC----CCCCCeecccceeEEEEEECCCCC
Confidence 6888887665 4 668888888888999999999999999999998876421 123467899999999999999999
Q ss_pred ccCCCCEEEee
Q 040376 87 NFCPSRTYFDV 97 (100)
Q Consensus 87 ~~~~Gd~V~~~ 97 (100)
.|++||+|++.
T Consensus 75 ~~~~Gd~V~~~ 85 (325)
T cd08264 75 GVKKGDRVVVY 85 (325)
T ss_pred CCCCCCEEEEC
Confidence 99999999864
No 90
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=99.62 E-value=6.2e-15 Score=98.92 Aligned_cols=87 Identities=24% Similarity=0.310 Sum_probs=73.9
Q ss_pred eeeEEEcccCCCCc---ceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecC
Q 040376 7 MHAVQYNSYGGGAA---DLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELE 83 (100)
Q Consensus 7 ~ka~~~~~~~~~~~---~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~ 83 (100)
||++++++.+.+ + .+.+++.+.|.+.+++++|++.++++|+.|+....+.++ ....|.++|+|++|+|+++|+
T Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~---~~~~~~~~g~e~~G~v~~~G~ 76 (336)
T cd08252 1 MKAIGFTQPLPI-TDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAP---VPGQPKILGWDASGVVEAVGS 76 (336)
T ss_pred CceEEecCCCCC-CcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCC---CCCCCcccccceEEEEEEcCC
Confidence 688999987765 4 477778888888999999999999999999988776543 234567899999999999999
Q ss_pred CCCccCCCCEEEee
Q 040376 84 SFNNFCPSRTYFDV 97 (100)
Q Consensus 84 ~v~~~~~Gd~V~~~ 97 (100)
+++.|++||+|++.
T Consensus 77 ~v~~~~~Gd~V~~~ 90 (336)
T cd08252 77 EVTLFKVGDEVYYA 90 (336)
T ss_pred CCCCCCCCCEEEEc
Confidence 99999999999875
No 91
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.62 E-value=7.9e-15 Score=98.35 Aligned_cols=87 Identities=30% Similarity=0.408 Sum_probs=73.3
Q ss_pred eeeEEEcccCCC-CcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376 7 MHAVQYNSYGGG-AADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF 85 (100)
Q Consensus 7 ~ka~~~~~~~~~-~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v 85 (100)
||++++.+.+.+ .+.+++++.+.|.+.++||+||+.++++|+.|+....|.++ ...+|.++|+|++|+|+++|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~---~~~~~~~~g~e~~G~V~~vG~~v 77 (329)
T cd08298 1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLP---PPKLPLIPGHEIVGRVEAVGPGV 77 (329)
T ss_pred CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCC---CCCCCccccccccEEEEEECCCC
Confidence 688888776632 13588888888888999999999999999999998887653 23457899999999999999999
Q ss_pred CccCCCCEEEe
Q 040376 86 NNFCPSRTYFD 96 (100)
Q Consensus 86 ~~~~~Gd~V~~ 96 (100)
.+|++||+|++
T Consensus 78 ~~~~~Gd~V~~ 88 (329)
T cd08298 78 TRFSVGDRVGV 88 (329)
T ss_pred CCCcCCCEEEE
Confidence 99999999976
No 92
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.62 E-value=9.2e-15 Score=97.25 Aligned_cols=87 Identities=25% Similarity=0.372 Sum_probs=74.6
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
||++++.+++.. +.+++++.+.|.+.+++++|++.++++|+.|+....+... ....+.++|+|++|+|+.+|+++.
T Consensus 1 ~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~---~~~~~~~~g~e~~G~v~~~G~~~~ 76 (325)
T cd08271 1 MKAWVLPKPGAA-LQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPP---AWSYPHVPGVDGAGVVVAVGAKVT 76 (325)
T ss_pred CeeEEEccCCCc-ceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCC---CCCCCcccccceEEEEEEeCCCCC
Confidence 789999887642 4699999999999999999999999999999988776543 122367899999999999999999
Q ss_pred ccCCCCEEEee
Q 040376 87 NFCPSRTYFDV 97 (100)
Q Consensus 87 ~~~~Gd~V~~~ 97 (100)
.|++||+|+++
T Consensus 77 ~~~~Gd~V~~~ 87 (325)
T cd08271 77 GWKVGDRVAYH 87 (325)
T ss_pred cCCCCCEEEec
Confidence 99999999986
No 93
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=99.61 E-value=6.7e-15 Score=99.22 Aligned_cols=83 Identities=17% Similarity=0.232 Sum_probs=71.5
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCC-CCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPS-KDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF 85 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~-~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v 85 (100)
||++++... ..+++++.+.|.|. ++||+|++.++++|+.|+....|.+. ...|.++|+|++|+|+++|+++
T Consensus 1 ~~a~~~~~~----~~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~----~~~~~~~g~e~~G~V~~vG~~v 72 (344)
T cd08284 1 MKAVVFKGP----GDVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP----STPGFVLGHEFVGEVVEVGPEV 72 (344)
T ss_pred CeeEEEecC----CCceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC----CCCCcccccceEEEEEeeCCCc
Confidence 688888753 34889999999985 99999999999999999988877653 2346789999999999999999
Q ss_pred CccCCCCEEEee
Q 040376 86 NNFCPSRTYFDV 97 (100)
Q Consensus 86 ~~~~~Gd~V~~~ 97 (100)
++|++||+|+++
T Consensus 73 ~~~~~Gd~V~~~ 84 (344)
T cd08284 73 RTLKVGDRVVSP 84 (344)
T ss_pred cccCCCCEEEEc
Confidence 999999999875
No 94
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=99.60 E-value=1.3e-14 Score=95.70 Aligned_cols=91 Identities=34% Similarity=0.580 Sum_probs=74.7
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
||++++...+.. +.+.+++.+.|.+.+++|+|++.++++|+.|+....+..........|..+|+|++|+|+++|++++
T Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~ 79 (309)
T cd05289 1 MKAVRIHEYGGP-EVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVT 79 (309)
T ss_pred CceEEEcccCCc-cceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCC
Confidence 688888877664 5577777777888999999999999999999998877542111234578899999999999999999
Q ss_pred ccCCCCEEEeec
Q 040376 87 NFCPSRTYFDVY 98 (100)
Q Consensus 87 ~~~~Gd~V~~~~ 98 (100)
+|++||+|+++.
T Consensus 80 ~~~~G~~V~~~~ 91 (309)
T cd05289 80 GFKVGDEVFGMT 91 (309)
T ss_pred CCCCCCEEEEcc
Confidence 999999999864
No 95
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=99.60 E-value=8.1e-15 Score=98.13 Aligned_cols=83 Identities=18% Similarity=0.157 Sum_probs=66.6
Q ss_pred ceeeEEEcc-c-CCC-CcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeec
Q 040376 6 LMHAVQYNS-Y-GGG-AADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCEL 82 (100)
Q Consensus 6 ~~ka~~~~~-~-~~~-~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG 82 (100)
.||+|++.+ + +++ .+.+++++.+.|.|++|||+||++++++||.|+.... . ..+.|.++|+|++|+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~---~---~~~~p~v~G~e~~G~V~~-- 73 (329)
T cd08294 2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSK---R---LNEGDTMIGTQVAKVIES-- 73 (329)
T ss_pred CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhcccc---c---CCCCCcEecceEEEEEec--
Confidence 489999988 3 443 3779999999999999999999999999998764211 1 124578999999999985
Q ss_pred CCCCccCCCCEEEee
Q 040376 83 ESFNNFCPSRTYFDV 97 (100)
Q Consensus 83 ~~v~~~~~Gd~V~~~ 97 (100)
.+++|++||||++.
T Consensus 74 -~~~~~~~Gd~V~~~ 87 (329)
T cd08294 74 -KNSKFPVGTIVVAS 87 (329)
T ss_pred -CCCCCCCCCEEEee
Confidence 45689999999874
No 96
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=99.60 E-value=8.8e-15 Score=100.64 Aligned_cols=95 Identities=20% Similarity=0.162 Sum_probs=74.0
Q ss_pred ccceeeEEEc--ccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCC------CCCC-CCccccccc
Q 040376 4 KPLMHAVQYN--SYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPF------LPRK-FPCIPGILV 74 (100)
Q Consensus 4 ~~~~ka~~~~--~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~------~~~~-~p~~~G~e~ 74 (100)
+.+|||+++. +++.+.+.+++++.+.|.++++||+|++.++++|+.|+....+..... .+.. .+.++|||+
T Consensus 10 ~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e~ 89 (393)
T cd08246 10 PEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSDA 89 (393)
T ss_pred chhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccce
Confidence 5679999875 344442358889999999999999999999999999998876641100 0011 225889999
Q ss_pred eEEEEeecCCCCccCCCCEEEeec
Q 040376 75 LPLIFCELESFNNFCPSRTYFDVY 98 (100)
Q Consensus 75 ~G~V~~vG~~v~~~~~Gd~V~~~~ 98 (100)
+|+|+++|++++.|++||+|+++.
T Consensus 90 ~G~V~~vG~~v~~~~~Gd~V~~~~ 113 (393)
T cd08246 90 SGIVWAVGEGVKNWKVGDEVVVHC 113 (393)
T ss_pred EEEEEEeCCCCCcCCCCCEEEEec
Confidence 999999999999999999998763
No 97
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=99.60 E-value=1.3e-14 Score=97.02 Aligned_cols=86 Identities=15% Similarity=0.203 Sum_probs=70.4
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
|||+++.+.+++ +.+.+++.+.|.+.++||+||+.++++|+.|.....+... ....+|.++|+|++|+|++.| +.
T Consensus 1 ~~a~~~~~~~~~-~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~--~~~~~~~~~g~e~~G~V~~~~--~~ 75 (326)
T cd08289 1 FQALVVEKDEDD-VSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGK--IVKRYPFIPGIDLAGTVVESN--DP 75 (326)
T ss_pred CeeEEEeccCCc-ceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCcc--ccCCCCcCcccceeEEEEEcC--CC
Confidence 789999988765 6788999999999999999999999999999876543211 122457889999999999954 57
Q ss_pred ccCCCCEEEee
Q 040376 87 NFCPSRTYFDV 97 (100)
Q Consensus 87 ~~~~Gd~V~~~ 97 (100)
+|++||+|+++
T Consensus 76 ~~~~Gd~V~~~ 86 (326)
T cd08289 76 RFKPGDEVIVT 86 (326)
T ss_pred CCCCCCEEEEc
Confidence 89999999875
No 98
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=99.59 E-value=1.1e-14 Score=98.33 Aligned_cols=88 Identities=16% Similarity=0.105 Sum_probs=66.5
Q ss_pred ceeeEEEcccCCCCcceEEeeccC----CCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccc--eEEEE
Q 040376 6 LMHAVQYNSYGGGAADLKHVELPV----PTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILV--LPLIF 79 (100)
Q Consensus 6 ~~ka~~~~~~~~~~~~~~~~~~~~----p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~--~G~V~ 79 (100)
.+|++....+. .++|++++.+. |+|++|||||||+|++|||.|++...|.+.. ....|.++|+++ .|++.
T Consensus 7 ~~~~~~~~~~~--~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~--~~~~p~~~g~~~~g~~~~~ 82 (338)
T cd08295 7 ILKAYVTGFPK--ESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDS--LYLPPFKPGEVITGYGVAK 82 (338)
T ss_pred EEecCCCCCCC--ccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCcc--ccCCCcCCCCeEeccEEEE
Confidence 35666633322 37899998877 7899999999999999999999988875321 134567888754 45555
Q ss_pred eecCCCCccCCCCEEEee
Q 040376 80 CELESFNNFCPSRTYFDV 97 (100)
Q Consensus 80 ~vG~~v~~~~~Gd~V~~~ 97 (100)
.+|++++.|++||+|+++
T Consensus 83 ~v~~~v~~~~vGd~V~~~ 100 (338)
T cd08295 83 VVDSGNPDFKVGDLVWGF 100 (338)
T ss_pred EEecCCCCCCCCCEEEec
Confidence 678888899999999864
No 99
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=99.58 E-value=2.1e-14 Score=96.37 Aligned_cols=82 Identities=26% Similarity=0.359 Sum_probs=71.5
Q ss_pred eeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCc
Q 040376 8 HAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNN 87 (100)
Q Consensus 8 ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 87 (100)
|++++.+.++. +++++.+.|.+.+++++|++.++++|+.|+....+.+. ...+|.++|+|++|+|+++|+++++
T Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~---~~~~p~~~g~e~~G~v~~~g~~~~~ 74 (330)
T cd08245 1 KAAVVHAAGGP---LEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWG---GSKYPLVPGHEIVGEVVEVGAGVEG 74 (330)
T ss_pred CeEEEecCCCC---ceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCC---CCCCCcccCccceEEEEEECCCCcc
Confidence 57888876544 89999999999999999999999999999999887653 2345788999999999999999999
Q ss_pred cCCCCEEE
Q 040376 88 FCPSRTYF 95 (100)
Q Consensus 88 ~~~Gd~V~ 95 (100)
|++||+|+
T Consensus 75 ~~~Gd~V~ 82 (330)
T cd08245 75 RKVGDRVG 82 (330)
T ss_pred cccCCEEE
Confidence 99999997
No 100
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=99.58 E-value=1.8e-14 Score=96.31 Aligned_cols=77 Identities=25% Similarity=0.376 Sum_probs=66.8
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
|||+++.+. ..+++++.+.|.+.++||+||+.++++|+.|+....|.++ .|.++|+|++|+|+++|++
T Consensus 1 ~~a~~~~~~----~~~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~------~~~~~G~e~~G~Vv~~G~~-- 68 (319)
T cd08242 1 MKALVLDGG----LDLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP------FPGVPGHEFVGIVEEGPEA-- 68 (319)
T ss_pred CeeEEEeCC----CcEEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC------CCCccCceEEEEEEEeCCC--
Confidence 689998763 3489999999999999999999999999999998877542 4678999999999999987
Q ss_pred ccCCCCEEEe
Q 040376 87 NFCPSRTYFD 96 (100)
Q Consensus 87 ~~~~Gd~V~~ 96 (100)
+++||+|..
T Consensus 69 -~~~G~~V~~ 77 (319)
T cd08242 69 -ELVGKRVVG 77 (319)
T ss_pred -CCCCCeEEE
Confidence 679999963
No 101
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.58 E-value=2.5e-14 Score=94.94 Aligned_cols=88 Identities=28% Similarity=0.454 Sum_probs=74.0
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
||++.+.+.+.+ +.+.+.+.+.|.+.+++++|++.++++|+.|+....+.+.. ...++.++|+|++|+|+++|+++.
T Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~~G~~~~ 77 (328)
T cd08268 1 MRAVRFHQFGGP-EVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIE--PPPLPARLGYEAAGVVEAVGAGVT 77 (328)
T ss_pred CeEEEEeccCCc-ceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCC--CCCCCCCCCcceEEEEEeeCCCCC
Confidence 688888876654 66888888888889999999999999999999887765432 234467899999999999999999
Q ss_pred ccCCCCEEEee
Q 040376 87 NFCPSRTYFDV 97 (100)
Q Consensus 87 ~~~~Gd~V~~~ 97 (100)
+|++||+|+++
T Consensus 78 ~~~~Gd~V~~~ 88 (328)
T cd08268 78 GFAVGDRVSVI 88 (328)
T ss_pred cCCCCCEEEec
Confidence 99999999876
No 102
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=99.57 E-value=2.1e-14 Score=97.01 Aligned_cols=75 Identities=23% Similarity=0.135 Sum_probs=63.0
Q ss_pred eEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCccCCCCEEEe
Q 040376 22 LKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFD 96 (100)
Q Consensus 22 ~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~ 96 (100)
+++++.+.|.|.++|++|++.++++|+.|+.++.+.........+|.++|+|++|+|+++|+++++|++||+|++
T Consensus 11 ~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~ 85 (340)
T TIGR00692 11 AELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVSV 85 (340)
T ss_pred cEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEEE
Confidence 888999999999999999999999999999886553110012245678999999999999999999999999987
No 103
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.57 E-value=4.4e-14 Score=93.79 Aligned_cols=86 Identities=27% Similarity=0.386 Sum_probs=71.4
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
||++.+.+.+.. +.+.+.+.+.|.+.++|++||+.++++|+.|+....+... ....|.++|+|++|+|+++|. .
T Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~---~~~~~~~~g~e~~G~v~~vG~--~ 74 (320)
T cd08243 1 MKAIVIEQPGGP-EVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSP---SVKFPRVLGIEAVGEVEEAPG--G 74 (320)
T ss_pred CeEEEEcCCCCc-cceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCC---CCCCCccccceeEEEEEEecC--C
Confidence 688888876654 5678888888788999999999999999999998877543 234568899999999999995 5
Q ss_pred ccCCCCEEEeec
Q 040376 87 NFCPSRTYFDVY 98 (100)
Q Consensus 87 ~~~~Gd~V~~~~ 98 (100)
.|++||+|+++.
T Consensus 75 ~~~~Gd~V~~~~ 86 (320)
T cd08243 75 TFTPGQRVATAM 86 (320)
T ss_pred CCCCCCEEEEec
Confidence 799999998864
No 104
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=99.56 E-value=4e-14 Score=95.93 Aligned_cols=89 Identities=19% Similarity=0.236 Sum_probs=69.0
Q ss_pred eeeEEEcccCCCCcceEEeeccCCC-CCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPT-PSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF 85 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~-~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v 85 (100)
+|++++.+.+++ ..++..+.+.|. +.+++|+|++.++++|+.|+....+.... ....|.++|+|++|+|+++|+++
T Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~V~~vG~~v 77 (352)
T cd08247 1 YKALTFKNNTSP-LTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFH--FKVKEKGLGRDYSGVIVKVGSNV 77 (352)
T ss_pred CceEEEecCCCc-ceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccc--cccCCCccCceeEEEEEEeCccc
Confidence 378888888776 445555555554 48999999999999999999877543211 11236789999999999999999
Q ss_pred C-ccCCCCEEEeec
Q 040376 86 N-NFCPSRTYFDVY 98 (100)
Q Consensus 86 ~-~~~~Gd~V~~~~ 98 (100)
+ .|++||+|++++
T Consensus 78 ~~~~~~Gd~V~~~~ 91 (352)
T cd08247 78 ASEWKVGDEVCGIY 91 (352)
T ss_pred ccCCCCCCEEEEee
Confidence 8 899999998864
No 105
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.55 E-value=9.1e-14 Score=94.62 Aligned_cols=89 Identities=15% Similarity=0.051 Sum_probs=67.3
Q ss_pred ceeeEEEccc--CCC-CcceEEeec---cCCC-CCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccc--cceE
Q 040376 6 LMHAVQYNSY--GGG-AADLKHVEL---PVPT-PSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGI--LVLP 76 (100)
Q Consensus 6 ~~ka~~~~~~--~~~-~~~~~~~~~---~~p~-~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~--e~~G 76 (100)
++|++.+.+. +.+ .++|++++. +.|. +++||||||+.++++||.|+....+... ....|.++|+ |++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~---~~~~p~~~G~~~~~~G 84 (348)
T PLN03154 8 ENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHD---SYLPPFVPGQRIEGFG 84 (348)
T ss_pred cceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCC---CCCCCcCCCCeeEeeE
Confidence 4678887443 222 367888874 5553 4799999999999999999875443221 1235788997 8899
Q ss_pred EEEeecCCCCccCCCCEEEee
Q 040376 77 LIFCELESFNNFCPSRTYFDV 97 (100)
Q Consensus 77 ~V~~vG~~v~~~~~Gd~V~~~ 97 (100)
+|.++|+++++|++||+|+++
T Consensus 85 ~v~~vg~~v~~~~~Gd~V~~~ 105 (348)
T PLN03154 85 VSKVVDSDDPNFKPGDLISGI 105 (348)
T ss_pred EEEEEecCCCCCCCCCEEEec
Confidence 999999999999999999864
No 106
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=99.55 E-value=5.5e-14 Score=94.67 Aligned_cols=76 Identities=20% Similarity=0.272 Sum_probs=64.1
Q ss_pred cceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHh-CCCCCCCCCCCCccccccceEEEEeecCCCCccCCCCEEEe
Q 040376 20 ADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQK-GQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFD 96 (100)
Q Consensus 20 ~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~-g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~ 96 (100)
+.+.+++.+.|.+.++||+||+.++++|+.|+.... +.+.. ....+|.++|+|++|+|+++|+++++|++||+|++
T Consensus 7 ~~~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~-~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~ 83 (339)
T cd08232 7 GDLRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGT-VRLREPMVLGHEVSGVVEAVGPGVTGLAPGQRVAV 83 (339)
T ss_pred CceEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCc-ccccCCeecCccceEEEEeeCCCCCcCCCCCEEEE
Confidence 568999999999999999999999999999988763 32211 12245678999999999999999999999999986
No 107
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=99.54 E-value=1.4e-13 Score=91.29 Aligned_cols=89 Identities=26% Similarity=0.371 Sum_probs=73.7
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN 86 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (100)
||++.+...+.+ ..+.+.+.+.+.+.+++++|++.++++|+.|+....+.+.. +..+|.++|+|++|+|+.+|+++.
T Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~vg~~~~ 77 (325)
T TIGR02824 1 MKAIEITEPGGP-EVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPP--PPGASDILGLEVAGEVVAVGEGVS 77 (325)
T ss_pred CceEEEccCCCc-ccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC--CCCCCCCccceeEEEEEEeCCCCC
Confidence 678888766655 66777777777788999999999999999999887765532 234578899999999999999999
Q ss_pred ccCCCCEEEeec
Q 040376 87 NFCPSRTYFDVY 98 (100)
Q Consensus 87 ~~~~Gd~V~~~~ 98 (100)
+|++||+|+++.
T Consensus 78 ~~~~Gd~V~~~~ 89 (325)
T TIGR02824 78 RWKVGDRVCALV 89 (325)
T ss_pred CCCCCCEEEEcc
Confidence 999999999864
No 108
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=99.54 E-value=9.1e-14 Score=92.69 Aligned_cols=84 Identities=21% Similarity=0.369 Sum_probs=69.6
Q ss_pred cccCCC-CcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCccCCC
Q 040376 13 NSYGGG-AADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPS 91 (100)
Q Consensus 13 ~~~~~~-~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 91 (100)
++++.+ ++.+++++.+.|.+.+++|+|++.++++|+.|+....+.+.. ...+|.++|+|++|+|+++|++++.|++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~~G~~v~~~~~G 81 (323)
T cd05282 4 TQFGEPLPLVLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGS--RPPLPAVPGNEGVGVVVEVGSGVSGLLVG 81 (323)
T ss_pred CcCCCCccceEEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCC--CCCCCCcCCcceEEEEEEeCCCCCCCCCC
Confidence 444544 136888888888899999999999999999999988776532 23467899999999999999999999999
Q ss_pred CEEEeec
Q 040376 92 RTYFDVY 98 (100)
Q Consensus 92 d~V~~~~ 98 (100)
|+|+++.
T Consensus 82 d~V~~~~ 88 (323)
T cd05282 82 QRVLPLG 88 (323)
T ss_pred CEEEEeC
Confidence 9999874
No 109
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=99.53 E-value=7.5e-14 Score=93.77 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=57.2
Q ss_pred cceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCccCCCCEEEee
Q 040376 20 ADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDV 97 (100)
Q Consensus 20 ~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~ 97 (100)
+.+++.+.+.|.|++|||+|||+++++||.++. |.+. ....|.++|.|++|+|+++| +.|++||||+++
T Consensus 17 ~~l~~~~~~~p~~~~~evlv~v~a~~~n~~~~~---g~~~---~~~~~~i~G~~~~g~v~~~~---~~~~~GdrV~~~ 85 (325)
T TIGR02825 17 SDFELKTVELPPLNNGEVLLEALFLSVDPYMRV---AAKR---LKEGDTMMGQQVARVVESKN---VALPKGTIVLAS 85 (325)
T ss_pred CceEEEeccCCCCCCCcEEEEEEEEecCHHHhc---ccCc---CCCCCcEecceEEEEEEeCC---CCCCCCCEEEEe
Confidence 789999999999999999999999999996543 4332 12346799999999999976 469999999875
No 110
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.53 E-value=1.1e-13 Score=93.60 Aligned_cols=77 Identities=19% Similarity=0.158 Sum_probs=63.1
Q ss_pred cceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCccCCCCEEEe
Q 040376 20 ADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFD 96 (100)
Q Consensus 20 ~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~ 96 (100)
+.+++++.+.|.+.++||+|++.++++|+.|+....+.........+|.++|+|++|+|+++|+++++|++||+|++
T Consensus 8 ~~~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~ 84 (343)
T cd05285 8 GDLRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVGDRVAI 84 (343)
T ss_pred CceeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCCCEEEE
Confidence 44888999999999999999999999999999876432111112235678999999999999999999999999985
No 111
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.53 E-value=2.4e-13 Score=90.88 Aligned_cols=88 Identities=26% Similarity=0.352 Sum_probs=72.0
Q ss_pred eeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCc
Q 040376 8 HAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNN 87 (100)
Q Consensus 8 ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 87 (100)
|++.+...+.. ..+.+.+.+.|.+.+++++|++.++++|+.|+....+.+.. ....|.++|+|++|+|+.+|+++.+
T Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~g~~~~~ 77 (337)
T cd08275 1 RAVVLTGFGGL-DKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDS--APKPPFVPGFECAGTVEAVGEGVKD 77 (337)
T ss_pred CeEEEcCCCCc-cceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC--CCCCCCCCcceeEEEEEEECCCCcC
Confidence 45666655554 56888888878889999999999999999999988775431 2245678999999999999999999
Q ss_pred cCCCCEEEeec
Q 040376 88 FCPSRTYFDVY 98 (100)
Q Consensus 88 ~~~Gd~V~~~~ 98 (100)
|++||+|+++.
T Consensus 78 ~~~G~~V~~~~ 88 (337)
T cd08275 78 FKVGDRVMGLT 88 (337)
T ss_pred CCCCCEEEEec
Confidence 99999999863
No 112
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=99.52 E-value=2e-13 Score=93.83 Aligned_cols=75 Identities=19% Similarity=0.235 Sum_probs=63.5
Q ss_pred eEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCC-C---CCCCCCCccccccceEEEEeecCCCCccCCCCEEEe
Q 040376 22 LKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLR-P---FLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFD 96 (100)
Q Consensus 22 ~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~-~---~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~ 96 (100)
+++++.+.|.+.+++++|++.++++|+.|+....+... . .....+|.++|+|++|+|+++|++++.|++||+|++
T Consensus 39 ~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~ 117 (384)
T cd08265 39 LRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTA 117 (384)
T ss_pred EEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCCCCCCCCCEEEE
Confidence 88999999999999999999999999999988764210 0 011346789999999999999999999999999985
No 113
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=99.50 E-value=3.9e-13 Score=88.75 Aligned_cols=85 Identities=22% Similarity=0.285 Sum_probs=70.7
Q ss_pred eeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCc
Q 040376 8 HAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNN 87 (100)
Q Consensus 8 ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 87 (100)
||+.....+.+ ..+.+.+.+.+.+.+++++|++.++++|+.|+....+.+. ..+|.++|+|++|+|+.+|+++.+
T Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~----~~~~~~~g~e~~G~v~~~g~~~~~ 75 (320)
T cd05286 1 KAVRIHKTGGP-EVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYP----LPLPFVLGVEGAGVVEAVGPGVTG 75 (320)
T ss_pred CeEEEecCCCc-cceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCC----CCCCccCCcceeEEEEEECCCCCC
Confidence 46666655554 5677877777778899999999999999999998877643 245678999999999999999999
Q ss_pred cCCCCEEEee
Q 040376 88 FCPSRTYFDV 97 (100)
Q Consensus 88 ~~~Gd~V~~~ 97 (100)
|++||+|+++
T Consensus 76 ~~~G~~V~~~ 85 (320)
T cd05286 76 FKVGDRVAYA 85 (320)
T ss_pred CCCCCEEEEe
Confidence 9999999886
No 114
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=99.49 E-value=3.7e-13 Score=90.13 Aligned_cols=89 Identities=13% Similarity=0.028 Sum_probs=67.7
Q ss_pred eeeEEEcccCC---CCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecC
Q 040376 7 MHAVQYNSYGG---GAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELE 83 (100)
Q Consensus 7 ~ka~~~~~~~~---~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~ 83 (100)
.|+|.++..+. +++.+.+++.+.|.+.+++|+||+.++++|+.|+....+......+...+.++|+|++|+|+++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~ 81 (329)
T cd05288 2 NRQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRS 81 (329)
T ss_pred CcEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCC
Confidence 47788776541 237899999999999999999999999999987765544321111223356889999999999996
Q ss_pred CCCccCCCCEEEee
Q 040376 84 SFNNFCPSRTYFDV 97 (100)
Q Consensus 84 ~v~~~~~Gd~V~~~ 97 (100)
+ .|++||+|+++
T Consensus 82 ~--~~~~Gd~V~~~ 93 (329)
T cd05288 82 P--DFKVGDLVSGF 93 (329)
T ss_pred C--CCCCCCEEecc
Confidence 4 79999999875
No 115
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.49 E-value=2.9e-13 Score=89.91 Aligned_cols=77 Identities=17% Similarity=0.156 Sum_probs=65.1
Q ss_pred cceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHH-hCCCCCCCCCCCCccccccceEEEEeecCCCCccCCCCEEEee
Q 040376 20 ADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQ-KGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDV 97 (100)
Q Consensus 20 ~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~-~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~ 97 (100)
+.+++.+.+.|.+.++||+|++.++++|+.|+... .+.... .....|.++|+|++|+|+++|++++.|++||+|+++
T Consensus 5 ~~~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~-~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~ 82 (312)
T cd08269 5 GRFEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWF-VYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAGL 82 (312)
T ss_pred CeeEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCc-ccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEEe
Confidence 56889999999999999999999999999999887 554321 012246789999999999999999999999999976
No 116
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.49 E-value=2.3e-13 Score=90.31 Aligned_cols=86 Identities=36% Similarity=0.646 Sum_probs=68.5
Q ss_pred EcccCCCCcce--EEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCccC
Q 040376 12 YNSYGGGAADL--KHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFC 89 (100)
Q Consensus 12 ~~~~~~~~~~~--~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (100)
++..+++ +++ ++.+.+.|.+.++||+|++.++++|+.|+....|.+........+..+|+|++|+|+++|+++.+|+
T Consensus 3 ~~~~~~~-~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~ 81 (319)
T cd08267 3 YTRYGSP-EVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFK 81 (319)
T ss_pred eCCCCCh-hhhhhccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCC
Confidence 3445554 444 7778888889999999999999999999998877543111223467899999999999999999999
Q ss_pred CCCEEEeec
Q 040376 90 PSRTYFDVY 98 (100)
Q Consensus 90 ~Gd~V~~~~ 98 (100)
+||+|++..
T Consensus 82 ~Gd~V~~~~ 90 (319)
T cd08267 82 VGDEVFGRL 90 (319)
T ss_pred CCCEEEEec
Confidence 999998764
No 117
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=99.48 E-value=8.3e-13 Score=87.39 Aligned_cols=88 Identities=27% Similarity=0.397 Sum_probs=71.4
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCC-CCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPS-KDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF 85 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~-~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v 85 (100)
|+++++...+.+ ..+.+.+.+ |.+. +++++|++.++++|+.|+....+.+.. ....|.++|+|++|+|+.+|+++
T Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~g~~~ 76 (323)
T cd08241 1 MKAVVCKELGGP-EDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQV--KPPLPFVPGSEVAGVVEAVGEGV 76 (323)
T ss_pred CeEEEEecCCCc-ceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCC--CCCCCCcccceeEEEEEEeCCCC
Confidence 688888766554 667787777 6666 499999999999999999988775431 22346689999999999999999
Q ss_pred CccCCCCEEEeec
Q 040376 86 NNFCPSRTYFDVY 98 (100)
Q Consensus 86 ~~~~~Gd~V~~~~ 98 (100)
.+|++||+|+++.
T Consensus 77 ~~~~~G~~V~~~~ 89 (323)
T cd08241 77 TGFKVGDRVVALT 89 (323)
T ss_pred CCCCCCCEEEEec
Confidence 9999999999864
No 118
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=99.34 E-value=8.6e-12 Score=82.09 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=58.8
Q ss_pred CCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCccCCCCEEEeec
Q 040376 29 VPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDVY 98 (100)
Q Consensus 29 ~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 98 (100)
.|.+.+++++|++.++++|+.|+....+.+.. ...+|.++|+|++|+|+++|+++++|++||+|+++.
T Consensus 2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~ 69 (303)
T cd08251 2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPT--MPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGT 69 (303)
T ss_pred CCCCCCCEEEEEEEEeecChHHHHHHCCCCCC--CCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEec
Confidence 46788999999999999999999998876542 234678999999999999999999999999998764
No 119
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=99.25 E-value=3.6e-11 Score=77.99 Aligned_cols=61 Identities=23% Similarity=0.232 Sum_probs=52.8
Q ss_pred cEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCccCCCCEEEeec
Q 040376 36 EVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDVY 98 (100)
Q Consensus 36 ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 98 (100)
||+|++.++++|+.|+....+... .....|.++|+|++|+|+++|++++.|++||+|++..
T Consensus 1 ~v~i~v~~~~i~~~d~~~~~g~~~--~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~ 61 (271)
T cd05188 1 EVLVRVEAAGLCGTDLHIRRGGYP--PPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLP 61 (271)
T ss_pred CeEEEEEEEEecchhHHHHcCCCC--cCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcC
Confidence 689999999999999999887653 1234578899999999999999999999999999764
No 120
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=99.18 E-value=1.3e-10 Score=75.69 Aligned_cols=59 Identities=17% Similarity=0.087 Sum_probs=52.1
Q ss_pred CcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCccCCCCEEEeec
Q 040376 35 DEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDVY 98 (100)
Q Consensus 35 ~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 98 (100)
+|++||+.++++|+.|+....+.+. .+|.++|+|++|+|+++|+++++|++||+|+++.
T Consensus 1 ~~v~i~v~~~~~~~~d~~~~~g~~~-----~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~ 59 (293)
T cd05195 1 DEVEVEVKAAGLNFRDVLVALGLLP-----GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA 59 (293)
T ss_pred CceEEEEEEEecCHHHHHHHhCCCC-----CCCCccceeeeEEEEeecCCccCCCCCCEEEEEe
Confidence 5899999999999999998877542 3467899999999999999999999999999864
No 121
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=99.12 E-value=6.6e-10 Score=74.18 Aligned_cols=86 Identities=20% Similarity=0.227 Sum_probs=60.1
Q ss_pred eeeEEEcc--cCCC-CcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccc----cceEEEE
Q 040376 7 MHAVQYNS--YGGG-AADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGI----LVLPLIF 79 (100)
Q Consensus 7 ~ka~~~~~--~~~~-~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~----e~~G~V~ 79 (100)
.|.+++.. .+.| .+.|++++.+.|.|+.||||+|+.|.|++|.-+..++... .+..|..+|- -.+|+|+
T Consensus 9 ~~~~~la~rP~g~p~~d~F~lee~~vp~p~~GqvLl~~~ylS~DPymRgrm~d~~----SY~~P~~lG~~~~gg~V~~Vv 84 (340)
T COG2130 9 NRRIVLASRPEGAPVPDDFRLEEVDVPEPGEGQVLLRTLYLSLDPYMRGRMSDAP----SYAPPVELGEVMVGGTVAKVV 84 (340)
T ss_pred hheeeeccCCCCCCCCCCceeEeccCCCCCcCceEEEEEEeccCHHHeecccCCc----ccCCCcCCCceeECCeeEEEE
Confidence 35555543 2333 3679999999999999999999999999996544333322 2333444554 4455565
Q ss_pred eecCCCCccCCCCEEEeec
Q 040376 80 CELESFNNFCPSRTYFDVY 98 (100)
Q Consensus 80 ~vG~~v~~~~~Gd~V~~~~ 98 (100)
+ ++.++|++||.|.+..
T Consensus 85 ~--S~~~~f~~GD~V~~~~ 101 (340)
T COG2130 85 A--SNHPGFQPGDIVVGVS 101 (340)
T ss_pred e--cCCCCCCCCCEEEecc
Confidence 5 7788999999998763
No 122
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=98.88 E-value=8e-09 Score=67.28 Aligned_cols=54 Identities=15% Similarity=0.055 Sum_probs=47.4
Q ss_pred EEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCccCCCCEEEeec
Q 040376 39 LKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDVY 98 (100)
Q Consensus 39 v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 98 (100)
||+.++++|+.|++...+.+. .|.++|+|++|+|+++|++++.|++||+|+++.
T Consensus 2 i~v~~~~i~~~d~~~~~g~~~------~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~ 55 (288)
T smart00829 2 VEVRAAGLNFRDVLIALGLLP------GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA 55 (288)
T ss_pred eeEEEEecCHHHHHHhcCCCC------CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc
Confidence 789999999999998877542 257899999999999999999999999999863
No 123
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=98.85 E-value=3.2e-08 Score=67.81 Aligned_cols=91 Identities=31% Similarity=0.435 Sum_probs=61.2
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCC-CCCCCccccccceEE---EEeec
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFL-PRKFPCIPGILVLPL---IFCEL 82 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~-~~~~p~~~G~e~~G~---V~~vG 82 (100)
++.+.+....+..+.....+.+.|.|.++++++++.++++||.|+++.+|.+.+.. ...+|.+++.++.|. +...|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g 84 (347)
T KOG1198|consen 5 IRRVSLVSPPGGGEVLFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVG 84 (347)
T ss_pred cceEEEeccCCCcceEEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccc
Confidence 44455544433325556678899999999999999999999999999999876421 125675555555555 44445
Q ss_pred -CCCCccCCCCEEEee
Q 040376 83 -ESFNNFCPSRTYFDV 97 (100)
Q Consensus 83 -~~v~~~~~Gd~V~~~ 97 (100)
..+..+..||.+...
T Consensus 85 ~~~~~~~~~g~~~~~~ 100 (347)
T KOG1198|consen 85 DDVVGGWVHGDAVVAF 100 (347)
T ss_pred cccccceEeeeEEeec
Confidence 334456677665543
No 124
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=98.25 E-value=1.5e-06 Score=57.02 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=32.3
Q ss_pred CCCCCccccccceEEEEeecCCCCccCCCCEEEee
Q 040376 63 PRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDV 97 (100)
Q Consensus 63 ~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~ 97 (100)
+.++|.++|+|++|+|+++|+++++|++||+|+++
T Consensus 17 ~~~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~ 51 (277)
T cd08255 17 KLPLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF 51 (277)
T ss_pred cCcCCcccCcceeEEEEEeCCCCCCCCCCCEEEec
Confidence 45688999999999999999999999999999885
No 125
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=97.61 E-value=0.0014 Score=44.45 Aligned_cols=90 Identities=12% Similarity=0.033 Sum_probs=55.5
Q ss_pred eeeEEEccc--CCC-CcceEEee--ccC-CCCCCCcEEEEEeEeeeChhhHHHHhCCCCC--CCCCCCCccccccceEEE
Q 040376 7 MHAVQYNSY--GGG-AADLKHVE--LPV-PTPSKDEVLLKLEATALNPVDWKIQKGQLRP--FLPRKFPCIPGILVLPLI 78 (100)
Q Consensus 7 ~ka~~~~~~--~~~-~~~~~~~~--~~~-p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~--~~~~~~p~~~G~e~~G~V 78 (100)
.+++++..+ +.| .+++.++. .+. .+++.++|+||..|-+..|.-...+....+. ..+.....+.-...+|+|
T Consensus 4 nkqvvLk~y~~g~P~~~d~~~~~~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~kV 83 (343)
T KOG1196|consen 4 NKQVILKNYVTGFPTESDFEFTTTTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAKV 83 (343)
T ss_pred ccEEEEeccCCCCCccccceeeeeeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEEE
Confidence 356666542 222 24455443 333 3468899999999999999876554422111 011122222223789999
Q ss_pred EeecCCCCccCCCCEEEeec
Q 040376 79 FCELESFNNFCPSRTYFDVY 98 (100)
Q Consensus 79 ~~vG~~v~~~~~Gd~V~~~~ 98 (100)
++ +..++|++||.|+++.
T Consensus 84 i~--S~~~~~~~GD~v~g~~ 101 (343)
T KOG1196|consen 84 ID--SGHPNYKKGDLVWGIV 101 (343)
T ss_pred Ee--cCCCCCCcCceEEEec
Confidence 99 5678899999998874
No 126
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=94.29 E-value=0.17 Score=40.87 Aligned_cols=69 Identities=20% Similarity=0.300 Sum_probs=49.5
Q ss_pred cceEEeeccCC---CCCCCcEEEEEeEeeeChhhHHHHhCCCCC-CCCCC---CCccccccceEEEEeecCCCCccCCCC
Q 040376 20 ADLKHVELPVP---TPSKDEVLLKLEATALNPVDWKIQKGQLRP-FLPRK---FPCIPGILVLPLIFCELESFNNFCPSR 92 (100)
Q Consensus 20 ~~~~~~~~~~p---~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~-~~~~~---~p~~~G~e~~G~V~~vG~~v~~~~~Gd 92 (100)
..++|.+.+.. +..++.-+..|.|+.||.+|+++..|..++ ..+-. -.+.+|.|++|+- +-|.
T Consensus 1427 sSlrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGRd----------~~Gr 1496 (2376)
T KOG1202|consen 1427 SSLRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGRD----------ASGR 1496 (2376)
T ss_pred cceeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeecccc----------CCCc
Confidence 45778777654 236677789999999999999999998652 11111 2367899999873 4577
Q ss_pred EEEeec
Q 040376 93 TYFDVY 98 (100)
Q Consensus 93 ~V~~~~ 98 (100)
||+++.
T Consensus 1497 RvM~mv 1502 (2376)
T KOG1202|consen 1497 RVMGMV 1502 (2376)
T ss_pred EEEEee
Confidence 888764
No 127
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=93.77 E-value=0.09 Score=29.63 Aligned_cols=22 Identities=0% Similarity=-0.290 Sum_probs=18.5
Q ss_pred ceEEEEeecCCC---------CccCCCCEEE
Q 040376 74 VLPLIFCELESF---------NNFCPSRTYF 95 (100)
Q Consensus 74 ~~G~V~~vG~~v---------~~~~~Gd~V~ 95 (100)
..|+|+++|++. ..+++||+|+
T Consensus 35 ~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl 65 (93)
T cd00320 35 QEGKVVAVGPGRRNENGERVPLSVKVGDKVL 65 (93)
T ss_pred eEEEEEEECCCeECCCCCCccccccCCCEEE
Confidence 689999999873 3589999996
No 128
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=93.30 E-value=0.13 Score=29.52 Aligned_cols=22 Identities=5% Similarity=-0.120 Sum_probs=18.1
Q ss_pred ceEEEEeecCCCC----ccCCCCEEE
Q 040376 74 VLPLIFCELESFN----NFCPSRTYF 95 (100)
Q Consensus 74 ~~G~V~~vG~~v~----~~~~Gd~V~ 95 (100)
.-|+|+++|++.. .+++||+|+
T Consensus 45 ~~g~VvAVG~G~~~~~~~Vk~GD~Vl 70 (100)
T PTZ00414 45 NEGTVVAVAAATKDWTPTVKVGDTVL 70 (100)
T ss_pred ceeEEEEECCCCccccceecCCCEEE
Confidence 4699999998743 489999996
No 129
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=92.97 E-value=0.12 Score=29.28 Aligned_cols=23 Identities=0% Similarity=-0.286 Sum_probs=18.4
Q ss_pred ceEEEEeecCCCC---------ccCCCCEEEe
Q 040376 74 VLPLIFCELESFN---------NFCPSRTYFD 96 (100)
Q Consensus 74 ~~G~V~~vG~~v~---------~~~~Gd~V~~ 96 (100)
..|+|+++|++.. .+++||+|+-
T Consensus 36 ~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf 67 (95)
T PRK00364 36 QEGEVVAVGPGRRLDNGERVPLDVKVGDKVLF 67 (95)
T ss_pred ceEEEEEECCCeECCCCCEeecccCCCCEEEE
Confidence 5899999998542 4899999963
No 130
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=91.18 E-value=0.33 Score=27.31 Aligned_cols=23 Identities=0% Similarity=-0.208 Sum_probs=18.0
Q ss_pred ceEEEEeecCCCC----ccCCCCEEEe
Q 040376 74 VLPLIFCELESFN----NFCPSRTYFD 96 (100)
Q Consensus 74 ~~G~V~~vG~~v~----~~~~Gd~V~~ 96 (100)
..|+|+++|+... .+++||+|+-
T Consensus 36 ~~G~VvavG~g~~~~~~~Vk~GD~Vl~ 62 (91)
T PRK14533 36 MKAEVVAVGKLDDEEDFDIKVGDKVIF 62 (91)
T ss_pred ceEEEEEECCCCccccccccCCCEEEE
Confidence 5799999997532 4899999963
No 131
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=90.72 E-value=0.32 Score=27.57 Aligned_cols=21 Identities=0% Similarity=-0.224 Sum_probs=16.2
Q ss_pred eEEEEeecCCCC---------ccCCCCEEE
Q 040376 75 LPLIFCELESFN---------NFCPSRTYF 95 (100)
Q Consensus 75 ~G~V~~vG~~v~---------~~~~Gd~V~ 95 (100)
-|+|+++|++-. .+++||+|+
T Consensus 37 ~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vl 66 (96)
T COG0234 37 EGEVVAVGPGRRDENGELVPLDVKVGDRVL 66 (96)
T ss_pred ceEEEEEccceecCCCCEeccccccCCEEE
Confidence 599999996321 389999995
No 132
>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B.
Probab=90.67 E-value=0.34 Score=20.20 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=13.2
Q ss_pred eeeEEEcccCCCCcceEEeeccCCCC
Q 040376 7 MHAVQYNSYGGGAADLKHVELPVPTP 32 (100)
Q Consensus 7 ~ka~~~~~~~~~~~~~~~~~~~~p~~ 32 (100)
|||+.+.+. .++++++++.|.+
T Consensus 1 MkAv~y~G~----~~v~ve~VpdP~I 22 (23)
T PF13823_consen 1 MKAVVYHGP----KDVRVEEVPDPKI 22 (23)
T ss_dssp -EEEEEEET----TEEEEEEE----S
T ss_pred CcceEEeCC----CceEEEECCCccc
Confidence 789998874 5588888887753
No 133
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=90.47 E-value=0.31 Score=27.39 Aligned_cols=24 Identities=0% Similarity=-0.281 Sum_probs=16.7
Q ss_pred cceEEEEeecC--------CC-CccCCCCEEEe
Q 040376 73 LVLPLIFCELE--------SF-NNFCPSRTYFD 96 (100)
Q Consensus 73 e~~G~V~~vG~--------~v-~~~~~Gd~V~~ 96 (100)
...|+|+++|+ .+ ..+++||+|+-
T Consensus 34 ~~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~ 66 (93)
T PF00166_consen 34 PNQGKVVAVGPGRYNENGEEVPMDVKVGDKVLF 66 (93)
T ss_dssp EEEEEEEEE-SEEETTTSSEEETSS-TTSEEEE
T ss_pred cceeEEEEcCCccccCCCcEeeeeeeeccEEec
Confidence 36899999998 22 35899999853
No 134
>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]
Probab=82.15 E-value=2.1 Score=24.56 Aligned_cols=25 Identities=8% Similarity=-0.027 Sum_probs=17.6
Q ss_pred cccceEEEEeecCCCC---------ccCCCCEEE
Q 040376 71 GILVLPLIFCELESFN---------NFCPSRTYF 95 (100)
Q Consensus 71 G~e~~G~V~~vG~~v~---------~~~~Gd~V~ 95 (100)
+-...|+|+++|++.. ..++||+|.
T Consensus 41 ~K~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VL 74 (104)
T KOG1641|consen 41 GKLLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVL 74 (104)
T ss_pred cccceEEEEEEcCccccCCCCCcCccccCCCEEE
Confidence 3345688888886532 478999985
No 135
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=68.76 E-value=6.7 Score=27.11 Aligned_cols=23 Identities=0% Similarity=0.138 Sum_probs=19.3
Q ss_pred eEEEEeecCCCCccCCCCEEEeecC
Q 040376 75 LPLIFCELESFNNFCPSRTYFDVYD 99 (100)
Q Consensus 75 ~G~V~~vG~~v~~~~~Gd~V~~~~~ 99 (100)
-++|++ ++++++.+|.||++.+.
T Consensus 38 fA~Vve--S~~~~i~vGerlyGy~P 60 (314)
T PF11017_consen 38 FATVVE--SRHPGIAVGERLYGYFP 60 (314)
T ss_pred EEEEEe--eCCCCccCccEEEeecc
Confidence 467777 78999999999999863
No 136
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=61.58 E-value=5.8 Score=23.37 Aligned_cols=30 Identities=13% Similarity=-0.043 Sum_probs=22.4
Q ss_pred ccccccceEEEEeecCCCCccCCCCEEEee
Q 040376 68 CIPGILVLPLIFCELESFNNFCPSRTYFDV 97 (100)
Q Consensus 68 ~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~ 97 (100)
.++|-..+|.|---|......++||+|+.+
T Consensus 59 vI~g~~GSg~I~lNGaAArl~~~GD~vII~ 88 (116)
T PF02261_consen 59 VIPGERGSGVICLNGAAARLVQVGDRVIIM 88 (116)
T ss_dssp EEEESTTTT-EEEEGGGGGCS-TT-EEEEE
T ss_pred EEEccCCCcEEEECCHHHhccCCCCEEEEE
Confidence 577888899999989888889999999654
No 137
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=57.66 E-value=8.2 Score=22.54 Aligned_cols=30 Identities=17% Similarity=0.002 Sum_probs=25.2
Q ss_pred ccccccceEEEEeecCCCCccCCCCEEEee
Q 040376 68 CIPGILVLPLIFCELESFNNFCPSRTYFDV 97 (100)
Q Consensus 68 ~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~ 97 (100)
.++|-..+|+|.--|......++||+|+.+
T Consensus 58 vI~g~~gSg~I~lNGAAAr~~~~GD~vII~ 87 (111)
T cd06919 58 VIPGERGSGVICLNGAAARLGQPGDRVIIM 87 (111)
T ss_pred EEEcCCCCCEEEeCCHHHhcCCCCCEEEEE
Confidence 577888899999888877789999999654
No 138
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=55.47 E-value=17 Score=21.47 Aligned_cols=15 Identities=0% Similarity=0.058 Sum_probs=11.9
Q ss_pred CCccCCCCEEEeecC
Q 040376 85 FNNFCPSRTYFDVYD 99 (100)
Q Consensus 85 v~~~~~Gd~V~~~~~ 99 (100)
...+++||.|++.++
T Consensus 53 ~~~L~~GD~VLA~~~ 67 (124)
T PF15057_consen 53 RHSLQVGDKVLAPWE 67 (124)
T ss_pred cCcCCCCCEEEEecC
Confidence 345899999998875
No 139
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=54.19 E-value=10 Score=22.69 Aligned_cols=30 Identities=10% Similarity=-0.056 Sum_probs=25.2
Q ss_pred ccccccceEEEEeecCCCCccCCCCEEEee
Q 040376 68 CIPGILVLPLIFCELESFNNFCPSRTYFDV 97 (100)
Q Consensus 68 ~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~ 97 (100)
.++|-..+|+|---|......++||+|+.+
T Consensus 59 vI~G~~GSg~I~lNGAAArl~~~GD~VII~ 88 (126)
T TIGR00223 59 AIAGKRGSRIICVNGAAARCVSVGDIVIIA 88 (126)
T ss_pred EEEcCCCCCEEEeCCHHHhcCCCCCEEEEE
Confidence 577888999998888877789999999654
No 140
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=50.77 E-value=12 Score=22.38 Aligned_cols=30 Identities=10% Similarity=-0.153 Sum_probs=25.0
Q ss_pred ccccccceEEEEeecCCCCccCCCCEEEee
Q 040376 68 CIPGILVLPLIFCELESFNNFCPSRTYFDV 97 (100)
Q Consensus 68 ~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~ 97 (100)
.++|-..+|+|---|......++||+|+.+
T Consensus 59 vI~g~~GSg~I~lNGAAAr~~~~GD~vII~ 88 (126)
T PRK05449 59 VIAGERGSGVICLNGAAARLVQVGDLVIIA 88 (126)
T ss_pred EEEcCCCCCEEEeCCHHHhcCCCCCEEEEE
Confidence 577888899998888877778999999654
No 141
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=49.80 E-value=12 Score=18.81 Aligned_cols=13 Identities=8% Similarity=0.250 Sum_probs=7.8
Q ss_pred ccCCCCEEEeecC
Q 040376 87 NFCPSRTYFDVYD 99 (100)
Q Consensus 87 ~~~~Gd~V~~~~~ 99 (100)
++++||+|+...+
T Consensus 46 ~L~~G~~V~~~ik 58 (64)
T PF03459_consen 46 GLKPGDEVYASIK 58 (64)
T ss_dssp T-STT-EEEEEE-
T ss_pred CCCCCCEEEEEEe
Confidence 3788999987765
No 142
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=48.92 E-value=16 Score=19.00 Aligned_cols=15 Identities=27% Similarity=0.532 Sum_probs=12.1
Q ss_pred CCccCCCCEEEeecC
Q 040376 85 FNNFCPSRTYFDVYD 99 (100)
Q Consensus 85 v~~~~~Gd~V~~~~~ 99 (100)
...+++|..|...||
T Consensus 35 ~~~L~~G~kV~V~yd 49 (61)
T PF07076_consen 35 FDGLKPGMKVVVFYD 49 (61)
T ss_pred ccccCCCCEEEEEEE
Confidence 456899999988876
No 143
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=46.85 E-value=18 Score=18.36 Aligned_cols=13 Identities=15% Similarity=0.439 Sum_probs=9.9
Q ss_pred ccCCCCEEEeecC
Q 040376 87 NFCPSRTYFDVYD 99 (100)
Q Consensus 87 ~~~~Gd~V~~~~~ 99 (100)
++++||+|+..+.
T Consensus 48 ~l~~G~~v~~~ik 60 (69)
T TIGR00638 48 GLKPGKEVYAVIK 60 (69)
T ss_pred CCCCCCEEEEEEE
Confidence 4789999987764
No 144
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=46.28 E-value=17 Score=21.71 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=12.7
Q ss_pred CCccCCCCEEEeecC
Q 040376 85 FNNFCPSRTYFDVYD 99 (100)
Q Consensus 85 v~~~~~Gd~V~~~~~ 99 (100)
..+|++||.|+.+++
T Consensus 40 ~~~f~~GDlvLflpt 54 (129)
T PF10377_consen 40 FRNFQVGDLVLFLPT 54 (129)
T ss_pred EecCCCCCEEEEEec
Confidence 457999999998876
No 145
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=44.05 E-value=20 Score=20.29 Aligned_cols=12 Identities=0% Similarity=-0.028 Sum_probs=9.9
Q ss_pred CccCCCCEEEee
Q 040376 86 NNFCPSRTYFDV 97 (100)
Q Consensus 86 ~~~~~Gd~V~~~ 97 (100)
..+++||+|+.+
T Consensus 75 ~~Lk~GD~V~ll 86 (100)
T PF10844_consen 75 DGLKVGDKVLLL 86 (100)
T ss_pred cCCcCCCEEEEE
Confidence 369999999876
No 146
>PRK06763 F0F1 ATP synthase subunit alpha; Validated
Probab=40.25 E-value=36 Score=22.13 Aligned_cols=11 Identities=9% Similarity=-0.133 Sum_probs=8.3
Q ss_pred CccCCCCEEEe
Q 040376 86 NNFCPSRTYFD 96 (100)
Q Consensus 86 ~~~~~Gd~V~~ 96 (100)
+++|+||.|-+
T Consensus 73 ~nvKVGD~VKa 83 (213)
T PRK06763 73 SNVKVGDEVKA 83 (213)
T ss_pred CCcccCcEEEE
Confidence 45799998854
No 147
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=37.43 E-value=35 Score=13.79 Aligned_cols=10 Identities=20% Similarity=0.026 Sum_probs=7.5
Q ss_pred cCCCCEEEee
Q 040376 88 FCPSRTYFDV 97 (100)
Q Consensus 88 ~~~Gd~V~~~ 97 (100)
|++||.|..+
T Consensus 2 ~~~G~~V~I~ 11 (28)
T smart00739 2 FEVGDTVRVI 11 (28)
T ss_pred CCCCCEEEEe
Confidence 6788888654
No 148
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=36.63 E-value=18 Score=28.11 Aligned_cols=23 Identities=9% Similarity=-0.037 Sum_probs=15.2
Q ss_pred eEEEEeecC---CCCccCCCCEEEeec
Q 040376 75 LPLIFCELE---SFNNFCPSRTYFDVY 98 (100)
Q Consensus 75 ~G~V~~vG~---~v~~~~~Gd~V~~~~ 98 (100)
+|+|++ |+ .+-++++|||++++.
T Consensus 782 iGrIie-GSPAdRCgkLkVGDrilAVN 807 (984)
T KOG3209|consen 782 IGRIIE-GSPADRCGKLKVGDRILAVN 807 (984)
T ss_pred cccccc-CChhHhhccccccceEEEec
Confidence 455554 32 234699999999874
No 149
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=36.52 E-value=25 Score=24.79 Aligned_cols=15 Identities=7% Similarity=0.177 Sum_probs=12.5
Q ss_pred CCccCCCCEEEeecC
Q 040376 85 FNNFCPSRTYFDVYD 99 (100)
Q Consensus 85 v~~~~~Gd~V~~~~~ 99 (100)
|+.+|+||+|++..+
T Consensus 323 Vt~Lk~GD~vL~~~~ 337 (354)
T PF01959_consen 323 VTELKPGDEVLVYLE 337 (354)
T ss_pred eeecCCCCEEEEEec
Confidence 568999999988764
No 150
>PF14031 D-ser_dehydrat: Putative serine dehydratase domain; PDB: 3LLX_A 3ANV_A 3AWO_A 3AWN_A 3ANU_A 3GWQ_A.
Probab=35.75 E-value=48 Score=18.48 Aligned_cols=24 Identities=0% Similarity=-0.281 Sum_probs=12.1
Q ss_pred cceEEEEeecCCCCccCCCCEEEee
Q 040376 73 LVLPLIFCELESFNNFCPSRTYFDV 97 (100)
Q Consensus 73 e~~G~V~~vG~~v~~~~~Gd~V~~~ 97 (100)
|=-|++.-.+. .+.+++||+|..+
T Consensus 53 eEHg~l~~~~~-~~~~~vGd~v~ii 76 (94)
T PF14031_consen 53 EEHGILRLPDG-ADRLKVGDKVEII 76 (94)
T ss_dssp SS-EEEE-STT-GCGT-TT-EEEEE
T ss_pred cceeEEECCCC-CCCCCCCCEEEEE
Confidence 33455554333 3469999999765
No 151
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=34.72 E-value=36 Score=26.16 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=14.2
Q ss_pred cCCCCccCCCCEE--EeecCC
Q 040376 82 LESFNNFCPSRTY--FDVYDS 100 (100)
Q Consensus 82 G~~v~~~~~Gd~V--~~~~~~ 100 (100)
-+-|+..|+|||| +++|.|
T Consensus 221 dDLVD~~KPGDRV~ivG~yr~ 241 (818)
T KOG0479|consen 221 DDLVDRVKPGDRVNIVGIYRS 241 (818)
T ss_pred ccccccCCCCCeeEEEEEEee
Confidence 3567889999998 666643
No 152
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=34.36 E-value=29 Score=20.75 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=8.7
Q ss_pred CCccCCCCEEEeecC
Q 040376 85 FNNFCPSRTYFDVYD 99 (100)
Q Consensus 85 v~~~~~Gd~V~~~~~ 99 (100)
...|..|++|+++|.
T Consensus 69 ~~~f~~g~~VLAlYP 83 (130)
T PF07039_consen 69 LAEFPKGTKVLALYP 83 (130)
T ss_dssp GGS--TT-EEEEE-T
T ss_pred hhhCCCCCEEEEECC
Confidence 346999999999974
No 153
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=34.22 E-value=28 Score=24.48 Aligned_cols=16 Identities=13% Similarity=0.245 Sum_probs=12.8
Q ss_pred CCCccCCCCEEEeecC
Q 040376 84 SFNNFCPSRTYFDVYD 99 (100)
Q Consensus 84 ~v~~~~~Gd~V~~~~~ 99 (100)
+|+.+|+||+|.+..+
T Consensus 312 sVt~Lk~GD~VL~~~~ 327 (344)
T PRK02290 312 SVVDLKPGDEVLGYLE 327 (344)
T ss_pred eeeecCCCCEEEEEec
Confidence 4578999999988754
No 154
>PF01796 DUF35: DUF35 OB-fold domain; InterPro: IPR002878 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is approximately 70 amino acids long. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain and a C-terminal OB fold domain represented in this entry. OB-folds are frequently found to bind nucleic acids suggesting this domain might bind to DNA or RNA.
Probab=33.34 E-value=74 Score=16.33 Aligned_cols=26 Identities=15% Similarity=0.037 Sum_probs=16.8
Q ss_pred cceEEEEe-ecCCCCccCCCCEEEeec
Q 040376 73 LVLPLIFC-ELESFNNFCPSRTYFDVY 98 (100)
Q Consensus 73 e~~G~V~~-vG~~v~~~~~Gd~V~~~~ 98 (100)
-..+.+.. .+++..++++|++|-..+
T Consensus 41 rv~~~i~~~~~~~~~~l~iG~~V~~vf 67 (68)
T PF01796_consen 41 RVMARIVDVDPEDPDELRIGMRVRLVF 67 (68)
T ss_pred EEEEEEecCCCCCcccCCCCCEEEEEE
Confidence 34555554 234566788999997664
No 155
>PF10077 DUF2314: Uncharacterized protein conserved in bacteria (DUF2314); InterPro: IPR018756 This domain of unkown function is found in various bacterial hypothetical proteins, as well as putative ankyrin repeat proteins.
Probab=30.96 E-value=64 Score=19.30 Aligned_cols=27 Identities=11% Similarity=-0.172 Sum_probs=21.4
Q ss_pred ccccceEEEEeecCCCCccCCCCEEEe
Q 040376 70 PGILVLPLIFCELESFNNFCPSRTYFD 96 (100)
Q Consensus 70 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~ 96 (100)
-|..+.|++.-....+++++.||+|..
T Consensus 62 ~g~~~~G~L~N~P~~i~~v~~Gd~v~~ 88 (133)
T PF10077_consen 62 DGDTFSGVLDNEPYYITNVKEGDRVSF 88 (133)
T ss_pred cCCEEEEEEecCCcccCCCCCCCEEEE
Confidence 466788988887777888999998853
No 156
>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length. It is found in association with PF00097 from PFAM, PF02182 from PFAM, PF00628 from PFAM, PF00240 from PFAM. There are two conserved sequence motifs: RAR and NYN. The domain is part of the protein NIRF which has zinc finger and ubiquitinating domains. The function of this domain is likely to be mainly structural, however this has not been confirmed. ; PDB: 3DB4_A 3ASK_A 3DB3_A 2L3R_A.
Probab=30.68 E-value=35 Score=19.01 Aligned_cols=14 Identities=7% Similarity=0.221 Sum_probs=8.2
Q ss_pred CCccCCCCEEEeec
Q 040376 85 FNNFCPSRTYFDVY 98 (100)
Q Consensus 85 v~~~~~Gd~V~~~~ 98 (100)
...+++||.|+.-|
T Consensus 63 w~~L~VG~~VMvNY 76 (85)
T PF12148_consen 63 WDELKVGQVVMVNY 76 (85)
T ss_dssp GGG--TT-EEEEEE
T ss_pred HHhCCcccEEEEec
Confidence 35689999998765
No 157
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=29.65 E-value=34 Score=22.35 Aligned_cols=14 Identities=7% Similarity=0.059 Sum_probs=8.1
Q ss_pred CCccCCCCEEEeec
Q 040376 85 FNNFCPSRTYFDVY 98 (100)
Q Consensus 85 v~~~~~Gd~V~~~~ 98 (100)
.+++++||+|.++-
T Consensus 29 m~~L~iGD~Vla~d 42 (217)
T PF01079_consen 29 MSDLKIGDRVLAVD 42 (217)
T ss_dssp GGG--TT-EEEEE-
T ss_pred HHHCCCCCEEEEec
Confidence 45799999999864
No 158
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=29.16 E-value=69 Score=16.83 Aligned_cols=24 Identities=0% Similarity=-0.381 Sum_probs=12.9
Q ss_pred ceEEEEeec-CCCCccCCCCEEEee
Q 040376 74 VLPLIFCEL-ESFNNFCPSRTYFDV 97 (100)
Q Consensus 74 ~~G~V~~vG-~~v~~~~~Gd~V~~~ 97 (100)
..|...++. .-+.+.++||.|+..
T Consensus 23 ~~G~~~~V~~~lv~~v~~Gd~VLVH 47 (68)
T PF01455_consen 23 FGGVRREVSLALVPDVKVGDYVLVH 47 (68)
T ss_dssp ETTEEEEEEGTTCTSB-TT-EEEEE
T ss_pred cCCcEEEEEEEEeCCCCCCCEEEEe
Confidence 334444443 334568999999765
No 159
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=28.59 E-value=80 Score=15.20 Aligned_cols=26 Identities=4% Similarity=-0.202 Sum_probs=16.1
Q ss_pred ccceEEEEeecC-CCCccCCCCEEEee
Q 040376 72 ILVLPLIFCELE-SFNNFCPSRTYFDV 97 (100)
Q Consensus 72 ~e~~G~V~~vG~-~v~~~~~Gd~V~~~ 97 (100)
....|+|.++-- .-...+.||..+-+
T Consensus 7 ~~~~G~V~~v~V~~G~~VkkGd~L~~l 33 (50)
T PF13533_consen 7 APVSGRVESVYVKEGQQVKKGDVLLVL 33 (50)
T ss_pred CCCCEEEEEEEecCCCEEcCCCEEEEE
Confidence 346788888641 22346788866654
No 160
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=28.41 E-value=93 Score=22.01 Aligned_cols=29 Identities=7% Similarity=-0.070 Sum_probs=19.3
Q ss_pred ccceEEEEeecC-----CCCccCCCCEEEeecCC
Q 040376 72 ILVLPLIFCELE-----SFNNFCPSRTYFDVYDS 100 (100)
Q Consensus 72 ~e~~G~V~~vG~-----~v~~~~~Gd~V~~~~~~ 100 (100)
+|.+|.++.+=+ .-+++++||.++++-+|
T Consensus 151 yDlaG~~vGvvek~~ii~g~~i~~GDviigl~SS 184 (345)
T COG0150 151 YDLAGFAVGVVEKDEIIDGSKVKEGDVIIGLASS 184 (345)
T ss_pred eeeeeeEEEEEEccccccccccCCCCEEEEecCC
Confidence 666666554322 12358999999999776
No 161
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=27.18 E-value=45 Score=21.98 Aligned_cols=10 Identities=0% Similarity=-0.260 Sum_probs=8.3
Q ss_pred ccCCCCEEEe
Q 040376 87 NFCPSRTYFD 96 (100)
Q Consensus 87 ~~~~Gd~V~~ 96 (100)
+|++||||..
T Consensus 25 ~~~~GdrV~~ 34 (280)
T TIGR03366 25 PLRLGQRVVW 34 (280)
T ss_pred CCCCCCEEEE
Confidence 4899999965
No 162
>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions []. The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I.
Probab=27.01 E-value=43 Score=18.38 Aligned_cols=30 Identities=10% Similarity=-0.044 Sum_probs=12.2
Q ss_pred ccccccceEEEEeec------CC---CCccCCCCEEEee
Q 040376 68 CIPGILVLPLIFCEL------ES---FNNFCPSRTYFDV 97 (100)
Q Consensus 68 ~~~G~e~~G~V~~vG------~~---v~~~~~Gd~V~~~ 97 (100)
..++..+.|.+-.-- +. ...|++||-|.+-
T Consensus 40 ~~l~~~f~GiIR~~DVR~te~Dkv~~~~~FrpGDIVrA~ 78 (82)
T PF10447_consen 40 RPLKEPFQGIIRKQDVRATEKDKVKMYDCFRPGDIVRAR 78 (82)
T ss_dssp S----SS-S-EEEEGGGT-SS----GGGT--SSSEEEEE
T ss_pred cccccccEEEEEeeeecccccchhhHHhccCCCCEEEEE
Confidence 345666777775521 11 1349999998764
No 163
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=26.24 E-value=35 Score=17.28 Aligned_cols=10 Identities=10% Similarity=-0.117 Sum_probs=5.1
Q ss_pred ccCCCCEEEe
Q 040376 87 NFCPSRTYFD 96 (100)
Q Consensus 87 ~~~~Gd~V~~ 96 (100)
.|+.||||..
T Consensus 5 pf~~GdrVQl 14 (54)
T PF14801_consen 5 PFRAGDRVQL 14 (54)
T ss_dssp S--TT-EEEE
T ss_pred CCCCCCEEEE
Confidence 4889999953
No 164
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=25.12 E-value=42 Score=18.43 Aligned_cols=11 Identities=0% Similarity=0.048 Sum_probs=8.5
Q ss_pred CccCCCCEEEe
Q 040376 86 NNFCPSRTYFD 96 (100)
Q Consensus 86 ~~~~~Gd~V~~ 96 (100)
+++++||+|+.
T Consensus 36 ~~L~~Gd~VvT 46 (84)
T TIGR00739 36 ESLKKGDKVLT 46 (84)
T ss_pred HhCCCCCEEEE
Confidence 45899999964
No 165
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=25.01 E-value=54 Score=19.58 Aligned_cols=30 Identities=10% Similarity=-0.136 Sum_probs=23.0
Q ss_pred ccccccceEEEEeecCCCCccCCCCEEEee
Q 040376 68 CIPGILVLPLIFCELESFNNFCPSRTYFDV 97 (100)
Q Consensus 68 ~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~ 97 (100)
.++|-..+|+|---|....-.++||+|+.+
T Consensus 58 vI~g~rGSg~I~lNGAAArl~~~GD~VII~ 87 (126)
T COG0853 58 VIAGERGSGVICLNGAAARLVQVGDLVIIM 87 (126)
T ss_pred EEEccCCCcEEEechHHHhhCCCCCEEEEE
Confidence 467777888888777666667999999654
No 166
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.02 E-value=86 Score=25.44 Aligned_cols=29 Identities=14% Similarity=0.053 Sum_probs=22.2
Q ss_pred cccccceEEEEeecCCCCccCCCCEEEeecC
Q 040376 69 IPGILVLPLIFCELESFNNFCPSRTYFDVYD 99 (100)
Q Consensus 69 ~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~ 99 (100)
+-|...-|+|..+|- +.|..|++|-.+.|
T Consensus 14 vtgknl~G~VayvG~--T~FA~G~WvGVvLD 42 (1243)
T KOG0971|consen 14 VTGKNLQGTVAYVGQ--TQFAEGKWVGVVLD 42 (1243)
T ss_pred eccCCccceEEEecc--cccccCceEEEEec
Confidence 345666788888874 57999999988876
No 167
>PF14444 S1-like: S1-like
Probab=23.81 E-value=60 Score=16.71 Aligned_cols=9 Identities=0% Similarity=-0.315 Sum_probs=7.1
Q ss_pred CCCCEEEee
Q 040376 89 CPSRTYFDV 97 (100)
Q Consensus 89 ~~Gd~V~~~ 97 (100)
++||+|.+-
T Consensus 35 ~vGdrV~v~ 43 (58)
T PF14444_consen 35 KVGDRVLVE 43 (58)
T ss_pred ccCCEEEEE
Confidence 799999653
No 168
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=23.52 E-value=91 Score=16.13 Aligned_cols=11 Identities=9% Similarity=0.108 Sum_probs=7.3
Q ss_pred ccCCCCEEEee
Q 040376 87 NFCPSRTYFDV 97 (100)
Q Consensus 87 ~~~~Gd~V~~~ 97 (100)
.+++||.+..+
T Consensus 24 gL~~GD~I~~I 34 (79)
T cd00986 24 KLKAGDHIIAV 34 (79)
T ss_pred CCCCCCEEEEE
Confidence 47777777655
No 169
>PF03347 TDH: Vibrio thermostable direct hemolysin; InterPro: IPR005015 Thermostable direct haemolysin (TDH) is considered an important virulence factor in Vibrio parahaemolyticus gastroenteritis and is a dimer composed of two identical subunit molecules of approximately 21 kDa. A number of biological properties have been attributed to TDH including haemolytic activity, enterotoxicity, cytotoxicity and cardiotoxicity [].; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region; PDB: 3A57_A.
Probab=22.86 E-value=25 Score=21.34 Aligned_cols=24 Identities=29% Similarity=0.702 Sum_probs=11.4
Q ss_pred eeccCCCCCCCcEEEEEeEeeeCh
Q 040376 25 VELPVPTPSKDEVLLKLEATALNP 48 (100)
Q Consensus 25 ~~~~~p~~~~~ev~v~v~~~~l~~ 48 (100)
-.+|.|.|+.+|+|--|+-+.++.
T Consensus 4 pSiPfpsPGsDEilFVvRnTT~~t 27 (166)
T PF03347_consen 4 PSIPFPSPGSDEILFVVRNTTIKT 27 (166)
T ss_dssp ---------EEEEEEEEEEGGGGS
T ss_pred CcCCCCCCCCceEEEEEecccccc
Confidence 345778888888888888776654
No 170
>PHA02097 hypothetical protein
Probab=21.89 E-value=1.1e+02 Score=15.29 Aligned_cols=12 Identities=17% Similarity=0.457 Sum_probs=9.9
Q ss_pred CCCcEEEEEeEe
Q 040376 33 SKDEVLLKLEAT 44 (100)
Q Consensus 33 ~~~ev~v~v~~~ 44 (100)
.|+.|+|++.++
T Consensus 18 tp~gv~iri~~t 29 (59)
T PHA02097 18 TPGGVIIRIAHT 29 (59)
T ss_pred CCCcEEEEEEeE
Confidence 467899999887
No 171
>PF02643 DUF192: Uncharacterized ACR, COG1430; InterPro: IPR003795 This entry describes proteins of unknown function.; PDB: 3M7A_B 3PJY_B.
Probab=21.43 E-value=43 Score=19.13 Aligned_cols=22 Identities=0% Similarity=-0.203 Sum_probs=12.8
Q ss_pred ceEEEEeecCCCC---ccCCCCEEE
Q 040376 74 VLPLIFCELESFN---NFCPSRTYF 95 (100)
Q Consensus 74 ~~G~V~~vG~~v~---~~~~Gd~V~ 95 (100)
-+=.|+|+..+.. ++++||+|-
T Consensus 81 ~a~~vLE~~aG~~~~~~i~~Gd~v~ 105 (108)
T PF02643_consen 81 PARYVLELPAGWFEKLGIKVGDRVR 105 (108)
T ss_dssp EECEEEEEETTHHHHHT--TT-EEE
T ss_pred ccCEEEEcCCCchhhcCCCCCCEEE
Confidence 3455788876643 589999984
No 172
>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.15 E-value=91 Score=21.10 Aligned_cols=22 Identities=5% Similarity=-0.191 Sum_probs=15.6
Q ss_pred eEEEEeec--CCCCccCCCCEEEe
Q 040376 75 LPLIFCEL--ESFNNFCPSRTYFD 96 (100)
Q Consensus 75 ~G~V~~vG--~~v~~~~~Gd~V~~ 96 (100)
.|-|+.+| ++|..++.||+|.+
T Consensus 227 pGDvI~TGTP~Gvg~l~~GD~v~~ 250 (266)
T COG0179 227 PGDVILTGTPSGVGFLKPGDVVEV 250 (266)
T ss_pred CCCEEEeCCCCCcccCCCCCEEEE
Confidence 46666666 56667889998754
No 173
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=21.10 E-value=89 Score=15.51 Aligned_cols=12 Identities=8% Similarity=0.097 Sum_probs=9.9
Q ss_pred ccCCCCEEEeec
Q 040376 87 NFCPSRTYFDVY 98 (100)
Q Consensus 87 ~~~~Gd~V~~~~ 98 (100)
.+++||.++.+-
T Consensus 30 gl~~GD~I~~In 41 (70)
T cd00136 30 GLQAGDVILAVN 41 (70)
T ss_pred CCCCCCEEEEEC
Confidence 599999998763
No 174
>PF02211 NHase_beta: Nitrile hydratase beta subunit; InterPro: IPR024690 Nitrile hydratases (EC:4.2.1.84) are unusual metalloenzymes that catalyse the hydration of nitriles to their corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and they contain one iron atom per alpha beta unit []. This entry represents the structural domain of nitrile hydratase beta subunit which contains irregular array of helices in the N-terminal extension.; GO: 0018822 nitrile hydratase activity; PDB: 2DXB_H 2DD5_K 2DD4_H 2ZZD_B 2DXC_H 1AHJ_F 2ZPE_B 2ZCF_B 2D0Q_B 2CZ7_B ....
Probab=20.58 E-value=82 Score=20.74 Aligned_cols=14 Identities=7% Similarity=-0.161 Sum_probs=7.8
Q ss_pred CCCccCCCCEEEee
Q 040376 84 SFNNFCPSRTYFDV 97 (100)
Q Consensus 84 ~v~~~~~Gd~V~~~ 97 (100)
....|++||+|...
T Consensus 131 ~~~~F~vGd~Vrv~ 144 (222)
T PF02211_consen 131 APPRFAVGDRVRVR 144 (222)
T ss_dssp SS-SS-TT-EEEE-
T ss_pred CCCCCCCCCEEEEC
Confidence 34679999999764
No 175
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=20.52 E-value=1.4e+02 Score=16.11 Aligned_cols=13 Identities=0% Similarity=-0.256 Sum_probs=9.8
Q ss_pred CccCCCCEEEeec
Q 040376 86 NNFCPSRTYFDVY 98 (100)
Q Consensus 86 ~~~~~Gd~V~~~~ 98 (100)
...++||.|+...
T Consensus 34 ~~~~vGD~VLVH~ 46 (76)
T TIGR00074 34 GEVKVGDYVLVHV 46 (76)
T ss_pred CCCCCCCEEEEec
Confidence 4578999997653
No 176
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=20.39 E-value=44 Score=15.56 Aligned_cols=10 Identities=20% Similarity=0.311 Sum_probs=7.6
Q ss_pred ccCCCCEEEe
Q 040376 87 NFCPSRTYFD 96 (100)
Q Consensus 87 ~~~~Gd~V~~ 96 (100)
++++||.|+.
T Consensus 15 nW~pGd~~iv 24 (40)
T PF10417_consen 15 NWKPGDDVIV 24 (40)
T ss_dssp TTCTTSGEBE
T ss_pred CCCCCCCeEc
Confidence 5788988873
No 177
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=20.16 E-value=1e+02 Score=18.45 Aligned_cols=22 Identities=0% Similarity=-0.224 Sum_probs=15.4
Q ss_pred EEEEeecCCCC---ccCCCCEEEee
Q 040376 76 PLIFCELESFN---NFCPSRTYFDV 97 (100)
Q Consensus 76 G~V~~vG~~v~---~~~~Gd~V~~~ 97 (100)
=.|+|+..+.. ++++||+|-..
T Consensus 96 ~yvLEl~~G~~~~~~i~vGd~v~~~ 120 (126)
T COG1430 96 RYVLELPAGWAARLGIKVGDRVEFR 120 (126)
T ss_pred cEEEEecCCchhhcCCccCCEEEec
Confidence 46777765553 48999999543
No 178
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=20.11 E-value=79 Score=21.29 Aligned_cols=14 Identities=14% Similarity=0.318 Sum_probs=7.7
Q ss_pred CccCCCCEEEeecC
Q 040376 86 NNFCPSRTYFDVYD 99 (100)
Q Consensus 86 ~~~~~Gd~V~~~~~ 99 (100)
..|++||+.+++|.
T Consensus 67 ~~WkvGd~C~A~~s 80 (264)
T PF06003_consen 67 KKWKVGDKCMAVYS 80 (264)
T ss_dssp T---TT-EEEEE-T
T ss_pred cCCCCCCEEEEEEC
Confidence 46999999999984
Done!