BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040379
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 121/308 (39%), Gaps = 65/308 (21%)
Query: 81 HVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLD 140
+V LE +DF+ L G I L L ++ LS N +G IP++IG L L+ L
Sbjct: 464 YVKTLETLILDFND--LTGEIPSGLSNCTNLNWISLSNNRLTGE-IPKWIGRLENLAILK 520
Query: 141 LSFAEFEGPIPSHLGNLSALQHLDLSLN--------HLFSAGNLDWLSHLSSLTYLDL-- 190
LS F G IP+ LG+ +L LDL+ N +F + ++ Y+ +
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580
Query: 191 --------GSNNL-----SRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPXXXXXXXXXXX 237
G+ NL RS ++ P T +Y H P
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF-------DNNGS 633
Query: 238 XQFLELSENNLTNSIYPWLFNAXXXXXXXXXXXXXXXXXIPVAFKHMVSVSFLGLASNEF 297
FL++S N L+ IP M + L L N+
Sbjct: 634 MMFLDMSYNMLSG-------------------------YIPKEIGSMPYLFILNLGHNDI 668
Query: 298 EGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIG 357
G +PD G++ L +L++S NKL G P Q +S + L E+ L NN L+G I
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIP---QAMSALTMLTEIDLSNNNLSG----PIP 721
Query: 358 QMSKLRTL 365
+M + T
Sbjct: 722 EMGQFETF 729
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 123/290 (42%), Gaps = 14/290 (4%)
Query: 86 EIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFI-GSLTKLSYLDLSFA 144
E++ ++ S G I P L L L YL L+ N F+G IP+F+ G+ L+ LDLS
Sbjct: 248 ELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGE-IPDFLSGACDTLTGLDLSGN 304
Query: 145 EFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQV 204
F G +P G+ S L+ L LS N+ +D L + L LDL N S + +
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF--SGELPES 362
Query: 205 VGNLPL-LTTLYLYRCHLP-PIVPXXXXXXXXXXXXQFLELSENNLTNSIYPWLFNAXXX 262
+ NL L TL L + PI+P Q L L N T I P L N
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILP--NLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SE 419
Query: 263 XXXXXXXXXXXXXXIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLR 322
IP + + + L L N EG +P + +L L + N L
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 323 GHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372
G P LS ++L + L NNRL G IG++ L L L+ NS
Sbjct: 480 GEIP---SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 130/336 (38%), Gaps = 108/336 (32%)
Query: 106 LQLHRLTYLDLSLNNFSGSPIPEFI-----GSLTKLS-------------------YLDL 141
L+L+ L LDLS N+ SG+ + ++ G L L+ +LD+
Sbjct: 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDV 207
Query: 142 SFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLD-WLSHLSSLTYLDLGSNNLSRSTD 200
S F IP LG+ SALQHLD+S N L +G+ +S + L L++ SN
Sbjct: 208 SSNNFSTGIP-FLGDCSALQHLDISGNKL--SGDFSRAISTCTELKLLNISSN------- 257
Query: 201 WLQVVGNLPLLTTLYLYRCHLPPIVPXXXXXXXXXXXXQFLELSENNLTNSIYPWLFNAX 260
Q VG +P L L Q+L L+EN T I +L A
Sbjct: 258 --QFVGPIPPLPLKSL----------------------QYLSLAENKFTGEIPDFLSGAC 293
Query: 261 XXXXXXXXXXXXXXXXIPVAFKHMVSVSFLGLASNEFEGGVP-DFFGNMCSLTMLNISDN 319
+P F + L L+SN F G +P D M L +L++S N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 320 KLRGHFPELIQNLS-----------RFS-------------SLKELYLENN--------- 346
+ G PE + NLS FS +L+ELYL+NN
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413
Query: 347 ---------------RLNGFTNNSIGQMSKLRTLSL 367
L+G +S+G +SKLR L L
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 132/321 (41%), Gaps = 51/321 (15%)
Query: 36 EEREALLTFKESLVDESGVLSSWGPEDEKRDCCKWTGVGCSNRTGHVIKLEIQPIDFDSF 95
E L++FK+ L D++ +L W ++ C + GV C + ++ ID S
Sbjct: 12 REIHQLISFKDVLPDKN-LLPDW---SSNKNPCTFDGVTCRDD-------KVTSIDLSSK 60
Query: 96 PLRGTISPALLQLHRLTYLD---LSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPS 152
PL S L LT L+ LS ++ +GS + F S L+ LDLS GP+ +
Sbjct: 61 PLNVGFSAVSSSLLSLTGLESLFLSNSHINGS-VSGFKCS-ASLTSLDLSRNSLSGPVTT 118
Query: 153 --HLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRS--TDW------- 201
LG+ S L+ L++S N L G + L+SL LDL +N++S + W
Sbjct: 119 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178
Query: 202 ----LQVVGNLPLLTTLYLYRC-----------HLPPIVPXXXXXXXXXXXXQFLELSEN 246
L + GN + + + RC + +P Q L++S N
Sbjct: 179 ELKHLAISGN-KISGDVDVSRCVNLEFLDVSSNNFSTGIP----FLGDCSALQHLDISGN 233
Query: 247 NLTNSIYPWLFNAXXXXXXXXXXXXXXXXXIPVAFKHMVSVSFLGLASNEFEGGVPDFFG 306
L+ + P+ K S+ +L LA N+F G +PDF
Sbjct: 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK---SLQYLSLAENKFTGEIPDFLS 290
Query: 307 NMC-SLTMLNISDNKLRGHFP 326
C +LT L++S N G P
Sbjct: 291 GACDTLTGLDLSGNHFYGAVP 311
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 10/139 (7%)
Query: 75 CSNRTGHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLT 134
C N + +L +Q F G I P L L L LS N SG+ IP +GSL+
Sbjct: 389 CQNPKNTLQELYLQNNGF-----TGKIPPTLSNCSELVSLHLSFNYLSGT-IPSSLGSLS 442
Query: 135 KLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNL-DWLSHLSSLTYLDLGSN 193
KL L L EG IP L + L+ L L N L G + LS+ ++L ++ L +N
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL--TGEIPSGLSNCTNLNWISLSNN 500
Query: 194 NLSRST-DWLQVVGNLPLL 211
L+ W+ + NL +L
Sbjct: 501 RLTGEIPKWIGRLENLAIL 519
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 8/178 (4%)
Query: 174 GNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPXXXXXXX 233
G++ +SLT LDL N+LS L +G+ L L + L P
Sbjct: 91 GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGL 148
Query: 234 XXXXXQFLELSENNLTNS-IYPWLFNAXXXXXXXXXXXXXXXXXIPVAFKHMVSVSFLGL 292
+ L+LS N+++ + + W+ + V V++ FL +
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG-DVDVSRCVNLEFLDV 207
Query: 293 ASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNG 350
+SN F G+P F G+ +L L+IS NKL G F I S + LK L + +N+ G
Sbjct: 208 SSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAI---STCTELKLLNISSNQFVG 261
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 280 AFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLK 339
F + S+ FL ++ N G +P G+M L +LN+ N + G P+ + +L L
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL---RGLN 683
Query: 340 ELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372
L L +N+L+G ++ ++ L + L+ N+L
Sbjct: 684 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 121/308 (39%), Gaps = 65/308 (21%)
Query: 81 HVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLD 140
+V LE +DF+ L G I L L ++ LS N +G IP++IG L L+ L
Sbjct: 461 YVKTLETLILDFND--LTGEIPSGLSNCTNLNWISLSNNRLTGE-IPKWIGRLENLAILK 517
Query: 141 LSFAEFEGPIPSHLGNLSALQHLDLSLN--------HLFSAGNLDWLSHLSSLTYLDL-- 190
LS F G IP+ LG+ +L LDL+ N +F + ++ Y+ +
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 577
Query: 191 --------GSNNL-----SRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPXXXXXXXXXXX 237
G+ NL RS ++ P T +Y H P
Sbjct: 578 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF-------DNNGS 630
Query: 238 XQFLELSENNLTNSIYPWLFNAXXXXXXXXXXXXXXXXXIPVAFKHMVSVSFLGLASNEF 297
FL++S N L+ IP M + L L N+
Sbjct: 631 MMFLDMSYNMLSG-------------------------YIPKEIGSMPYLFILNLGHNDI 665
Query: 298 EGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIG 357
G +PD G++ L +L++S NKL G P Q +S + L E+ L NN L+G I
Sbjct: 666 SGSIPDEVGDLRGLNILDLSSNKLDGRIP---QAMSALTMLTEIDLSNNNLSG----PIP 718
Query: 358 QMSKLRTL 365
+M + T
Sbjct: 719 EMGQFETF 726
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 123/290 (42%), Gaps = 14/290 (4%)
Query: 86 EIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFI-GSLTKLSYLDLSFA 144
E++ ++ S G I P L L L YL L+ N F+G IP+F+ G+ L+ LDLS
Sbjct: 245 ELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGE-IPDFLSGACDTLTGLDLSGN 301
Query: 145 EFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQV 204
F G +P G+ S L+ L LS N+ +D L + L LDL N S + +
Sbjct: 302 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF--SGELPES 359
Query: 205 VGNLPL-LTTLYLYRCHLP-PIVPXXXXXXXXXXXXQFLELSENNLTNSIYPWLFNAXXX 262
+ NL L TL L + PI+P Q L L N T I P L N
Sbjct: 360 LTNLSASLLTLDLSSNNFSGPILP--NLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SE 416
Query: 263 XXXXXXXXXXXXXXIPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLR 322
IP + + + L L N EG +P + +L L + N L
Sbjct: 417 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 476
Query: 323 GHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372
G P LS ++L + L NNRL G IG++ L L L+ NS
Sbjct: 477 GEIP---SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 130/336 (38%), Gaps = 108/336 (32%)
Query: 106 LQLHRLTYLDLSLNNFSGSPIPEFI-----GSLTKLS-------------------YLDL 141
L+L+ L LDLS N+ SG+ + ++ G L L+ +LD+
Sbjct: 145 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDV 204
Query: 142 SFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLD-WLSHLSSLTYLDLGSNNLSRSTD 200
S F IP LG+ SALQHLD+S N L +G+ +S + L L++ SN
Sbjct: 205 SSNNFSTGIP-FLGDCSALQHLDISGNKL--SGDFSRAISTCTELKLLNISSN------- 254
Query: 201 WLQVVGNLPLLTTLYLYRCHLPPIVPXXXXXXXXXXXXQFLELSENNLTNSIYPWLFNAX 260
Q VG +P L L Q+L L+EN T I +L A
Sbjct: 255 --QFVGPIPPLPLKSL----------------------QYLSLAENKFTGEIPDFLSGAC 290
Query: 261 XXXXXXXXXXXXXXXXIPVAFKHMVSVSFLGLASNEFEGGVP-DFFGNMCSLTMLNISDN 319
+P F + L L+SN F G +P D M L +L++S N
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 320 KLRGHFPELIQNLS-----------RFS-------------SLKELYLENN--------- 346
+ G PE + NLS FS +L+ELYL+NN
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 410
Query: 347 ---------------RLNGFTNNSIGQMSKLRTLSL 367
L+G +S+G +SKLR L L
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 446
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 132/321 (41%), Gaps = 51/321 (15%)
Query: 36 EEREALLTFKESLVDESGVLSSWGPEDEKRDCCKWTGVGCSNRTGHVIKLEIQPIDFDSF 95
E L++FK+ L D++ +L W ++ C + GV C + ++ ID S
Sbjct: 9 REIHQLISFKDVLPDKN-LLPDW---SSNKNPCTFDGVTCRDD-------KVTSIDLSSK 57
Query: 96 PLRGTISPALLQLHRLTYLD---LSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPS 152
PL S L LT L+ LS ++ +GS + F S L+ LDLS GP+ +
Sbjct: 58 PLNVGFSAVSSSLLSLTGLESLFLSNSHINGS-VSGFKCS-ASLTSLDLSRNSLSGPVTT 115
Query: 153 --HLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRS--TDW------- 201
LG+ S L+ L++S N L G + L+SL LDL +N++S + W
Sbjct: 116 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 175
Query: 202 ----LQVVGNLPLLTTLYLYRC-----------HLPPIVPXXXXXXXXXXXXQFLELSEN 246
L + GN + + + RC + +P Q L++S N
Sbjct: 176 ELKHLAISGN-KISGDVDVSRCVNLEFLDVSSNNFSTGIP----FLGDCSALQHLDISGN 230
Query: 247 NLTNSIYPWLFNAXXXXXXXXXXXXXXXXXIPVAFKHMVSVSFLGLASNEFEGGVPDFFG 306
L+ + P+ K S+ +L LA N+F G +PDF
Sbjct: 231 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK---SLQYLSLAENKFTGEIPDFLS 287
Query: 307 NMC-SLTMLNISDNKLRGHFP 326
C +LT L++S N G P
Sbjct: 288 GACDTLTGLDLSGNHFYGAVP 308
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 10/139 (7%)
Query: 75 CSNRTGHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLT 134
C N + +L +Q F G I P L L L LS N SG+ IP +GSL+
Sbjct: 386 CQNPKNTLQELYLQNNGF-----TGKIPPTLSNCSELVSLHLSFNYLSGT-IPSSLGSLS 439
Query: 135 KLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNL-DWLSHLSSLTYLDLGSN 193
KL L L EG IP L + L+ L L N L G + LS+ ++L ++ L +N
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL--TGEIPSGLSNCTNLNWISLSNN 497
Query: 194 NLSRST-DWLQVVGNLPLL 211
L+ W+ + NL +L
Sbjct: 498 RLTGEIPKWIGRLENLAIL 516
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 8/178 (4%)
Query: 174 GNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPXXXXXXX 233
G++ +SLT LDL N+LS L +G+ L L + L P
Sbjct: 88 GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGL 145
Query: 234 XXXXXQFLELSENNLTNS-IYPWLFNAXXXXXXXXXXXXXXXXXIPVAFKHMVSVSFLGL 292
+ L+LS N+++ + + W+ + V V++ FL +
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG-DVDVSRCVNLEFLDV 204
Query: 293 ASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNG 350
+SN F G+P F G+ +L L+IS NKL G F I S + LK L + +N+ G
Sbjct: 205 SSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAI---STCTELKLLNISSNQFVG 258
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 280 AFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLK 339
F + S+ FL ++ N G +P G+M L +LN+ N + G P+ + +L L
Sbjct: 624 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL---RGLN 680
Query: 340 ELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372
L L +N+L+G ++ ++ L + L+ N+L
Sbjct: 681 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 33 CIDEEREALLTFKESLVDESGVLSSWGPEDEKRDCCK--WTGVGCSN--RTGHVIKLEIQ 88
C ++++ALL K+ L + + LSSW P DCC W GV C +T V L++
Sbjct: 3 CNPQDKQALLQIKKDLGNPT-TLSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDLS 58
Query: 89 PIDFDSFPLRGTISPALLQLHRLTYLDLS-LNNFSGSPIPEFIGSLTKLSYLDLSFAEFE 147
++ P I +L L L +L + +NN G PIP I LT+L YL ++
Sbjct: 59 GLNL---PKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVS 114
Query: 148 GPIPSHLGNLSALQHLDLSLNHL 170
G IP L + L LD S N L
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNAL 137
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 277 IPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFS 336
IP A + + +L + G +PDF + +L L+ S N L G P I S
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI---SSLP 149
Query: 337 SLKELYLENNRLNGFTNNSIGQMSKLRT 364
+L + + NR++G +S G SKL T
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFT 177
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 18/135 (13%)
Query: 90 IDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKL-SYLDLSFAEFEG 148
+DF L GT+ P++ L L + N SG+ IP+ GS +KL + + +S G
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA-IPDSYGSFSKLFTSMTISRNRLTG 188
Query: 149 PIPSHLGNLSALQHLDLSLNH-------LFSAGNLDWLSHLS--SLTYLDLGSNNLSRST 199
IP NL+ L +DLS N LF + HL+ SL + DLG LS++
Sbjct: 189 KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF-DLGKVGLSKNL 246
Query: 200 DWL-----QVVGNLP 209
+ L ++ G LP
Sbjct: 247 NGLDLRNNRIYGTLP 261
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 72/188 (38%), Gaps = 12/188 (6%)
Query: 188 LDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCH--LPPIVPXXXXXXXXXXXXQFLELSE 245
LDL NL + + NLP L LY+ + + PI P +L ++
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL----HYLYITH 110
Query: 246 NNLTNSIYPWLFNAXXXXXXXXXXXXXXXXXIPVAFKHMVSVSFLGLASNEFEGGVPDFF 305
N++ +I P + +P + + ++ + N G +PD +
Sbjct: 111 TNVSGAI-PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 306 GNMCSL-TMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLRT 364
G+ L T + IS N+L G P NL +L + L N L G + G +
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANL----NLAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 365 LSLNGNSL 372
+ L NSL
Sbjct: 226 IHLAKNSL 233
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 277 IPVA-FKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRF 335
+P+ F +V+++ L L N+ + P F ++ LT L++ N+L+ P+ + +
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGV--FDKL 156
Query: 336 SSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372
+SLKEL L NN+L + ++++L+TL L+ N L
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 278 PVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSS 337
P F + +++L L NE + F + SL L + +N+L+ PE + +
Sbjct: 126 PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPE--GAFDKLTE 182
Query: 338 LKELYLENNRLNGFTNNSIGQMSKLRTLSLNGN 370
LK L L+NN+L + + KL+ L L N
Sbjct: 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 107 QLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLS 166
QL L L L N P P SLTKL+YL L + E + L++L+ L L
Sbjct: 107 QLVNLAELRLDRNQLKSLP-PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165
Query: 167 LNHL--FSAGNLDWLSHLSSLTYLDLGSNNLSR 197
N L G D L+ L +L L +N L R
Sbjct: 166 NNQLKRVPEGAFDKLTELKTLK---LDNNQLKR 195
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 108 LHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSL 167
L L L ++ N+F + +P+ L L++LDLS + E P+ +LS+LQ L++S
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 168 NHLFSAGNLDWLSHLSSLTYLDLGSNNLSRS 198
N+ FS + L+SL LD N++ S
Sbjct: 504 NNFFSLDTFPY-KCLNSLQVLDYSLNHIMTS 533
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 10/129 (7%)
Query: 86 EIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIG--SLTKLSYLDLSF 143
E+Q +D ++ A L L+ L L+ N + F G SL KL ++ +
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 144 AEFEG-PIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSR--STD 200
A E PI G+L L+ L+++ N + S ++ S+L++L +LDL SN + TD
Sbjct: 113 ASLENFPI----GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
Query: 201 WLQVVGNLP 209
L+V+ +P
Sbjct: 169 -LRVLHQMP 176
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 10/133 (7%)
Query: 65 RDCCKWTGVGCSNRTGHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGS 124
+ CC + G ++ ++ +D SF T+S L L +L +LD +N
Sbjct: 362 KGCCSQSDFGTTS---------LKYLDL-SFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411
Query: 125 PIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSS 184
SL L YLD+S LS+L+ L ++ N D + L +
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471
Query: 185 LTYLDLGSNNLSR 197
LT+LDL L +
Sbjct: 472 LTFLDLSQCQLEQ 484
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 277 IPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDN 319
+P F + +++FL L+ + E P F ++ SL +LN+S N
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 108 LHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSL 167
L L L ++ N+F + +P+ L L++LDLS + E P+ +LS+LQ L++S
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 168 NHLFSAGNLDWLSHLSSLTYLDLGSNNLSRS 198
N+ FS + L+SL LD N++ S
Sbjct: 528 NNFFSLDTFPY-KCLNSLQVLDYSLNHIMTS 557
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 10/129 (7%)
Query: 86 EIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIG--SLTKLSYLDLSF 143
E+Q +D ++ A L L+ L L+ N + F G SL KL ++ +
Sbjct: 77 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 136
Query: 144 AEFEG-PIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSR--STD 200
A E PI G+L L+ L+++ N + S ++ S+L++L +LDL SN + TD
Sbjct: 137 ASLENFPI----GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192
Query: 201 WLQVVGNLP 209
L+V+ +P
Sbjct: 193 -LRVLHQMP 200
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 10/133 (7%)
Query: 65 RDCCKWTGVGCSNRTGHVIKLEIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGS 124
+ CC + G I L+ + F+ T+S L L +L +LD +N
Sbjct: 386 KGCCSQSDFG-------TISLKYLDLSFNGVI---TMSSNFLGLEQLEHLDFQHSNLKQM 435
Query: 125 PIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSS 184
SL L YLD+S LS+L+ L ++ N D + L +
Sbjct: 436 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 495
Query: 185 LTYLDLGSNNLSR 197
LT+LDL L +
Sbjct: 496 LTFLDLSQCQLEQ 508
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 277 IPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDN 319
+P F + +++FL L+ + E P F ++ SL +LN+S N
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 108 LHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSL 167
L L L ++ N+F + +P+ L L++LDLS + E P+ +LS+LQ L++S
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 168 NHLFSAGNLDWLSHLSSLTYLDLGSNNLSRS 198
N+ FS + L+SL LD N++ S
Sbjct: 209 NNFFSLDTFPY-KCLNSLQVLDYSLNHIMTS 238
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 41/98 (41%)
Query: 100 TISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 159
T+S L L +L +LD +N SL L YLD+S LS+
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151
Query: 160 LQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSR 197
L+ L ++ N D + L +LT+LDL L +
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 189
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 277 IPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDN 319
+P F + +++FL L+ + E P F ++ SL +LN+S N
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 280 AFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLK 339
F + S++ L L N+ + F + SLT LN+S N+L+ P + + + LK
Sbjct: 47 VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGV--FDKLTQLK 103
Query: 340 ELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372
EL L N+L + ++++L+ L L N L
Sbjct: 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 285 VSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLE 344
++L L +N + F + SLT L + NKL+ P + N + +SL L L
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFN--KLTSLTYLNLS 84
Query: 345 NNRLNGFTNNSIGQMSKLRTLSLNGNSL 372
N+L N ++++L+ L+LN N L
Sbjct: 85 TNQLQSLPNGVFDKLTQLKELALNTNQL 112
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 280 AFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLK 339
F + S+++L L++N+ + F + L L ++ N+L+ P+ + + + LK
Sbjct: 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGV--FDKLTQLK 127
Query: 340 ELYLENNRLNGFTNNSIGQMSKLRTLSLNGN 370
+L L N+L + +++ L+ + L+ N
Sbjct: 128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 280 AFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLK 339
F + + LGLA+N+ F ++ L L + N+L+ P + R + LK
Sbjct: 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGV--FDRLTKLK 134
Query: 340 ELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372
EL L N+L + +++ L+TLSL+ N L
Sbjct: 135 ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 280 AFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLR----GHFPELIQNLSRF 335
F H+ + L L N+ + F + L L ++ N+L+ G F +L
Sbjct: 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL------- 154
Query: 336 SSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGN 370
++L+ L L N+L + + ++ KL+T++L GN
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 280 AFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLK 339
F + + LGLA+N+ F ++ L L + N+L+ P + R + LK
Sbjct: 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGV--FDRLTKLK 134
Query: 340 ELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372
EL L N+L + +++ L+TLSL+ N L
Sbjct: 135 ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 280 AFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLR----GHFPELIQNLSRF 335
F H+ + L L N+ + F + L L ++ N+L+ G F +L
Sbjct: 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL------- 154
Query: 336 SSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGN 370
++L+ L L N+L + + ++ KL+T++L GN
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 108 LHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSL 167
L L L ++ N+F + +P+ L L++LDLS + E P+ +LS+LQ L+++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 168 NHLFSA--GNLDWLSHLSSL 185
N L S G D L+ L +
Sbjct: 504 NQLKSVPDGIFDRLTSLQKI 523
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 277 IPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFS 336
+P F + +++FL L+ + E P F ++ SL +LN++ N+L+ P+ I R +
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGI--FDRLT 518
Query: 337 SLKELYLENN 346
SL++++L N
Sbjct: 519 SLQKIWLHTN 528
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 10/129 (7%)
Query: 86 EIQPIDFDSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIG--SLTKLSYLDLSF 143
E+Q +D ++ A L L+ L L+ N + F G SL KL ++ +
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 144 AEFEG-PIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSR--STD 200
A E PI G+L L+ L+++ N + S ++ S+L++L +LDL SN + TD
Sbjct: 113 ASLENFPI----GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
Query: 201 WLQVVGNLP 209
L+V+ +P
Sbjct: 169 -LRVLHQMP 176
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 41/98 (41%)
Query: 100 TISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 159
T+S L L +L +LD +N SL L YLD+S LS+
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446
Query: 160 LQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSR 197
L+ L ++ N D + L +LT+LDL L +
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 286 SVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLEN 345
S + L L SN+ + F + LT L++S N+++ P+ + + + L LYL
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGV--FDKLTKLTILYLHE 85
Query: 346 NRLNGFTNNSIGQMSKLRTLSLNGNSL 372
N+L N ++++L+ L+L+ N L
Sbjct: 86 NKLQSLPNGVFDKLTQLKELALDTNQL 112
Score = 34.7 bits (78), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 280 AFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLK 339
F + ++ L L+ N+ + F + LT+L + +NKL+ P + + + LK
Sbjct: 47 VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-LPNGV--FDKLTQLK 103
Query: 340 ELYLENNRLNGFTNNSIGQMSKLRTLSLNGN 370
EL L+ N+L + +++ L+ + L+ N
Sbjct: 104 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 280 AFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLK 339
A + S+ L +SN+ P N+ +L L+IS NK+ I L++ ++L+
Sbjct: 146 ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD-----ISVLAKLTNLE 198
Query: 340 ELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372
L NN+++ T +G ++ L LSLNGN L
Sbjct: 199 SLIATNNQISDIT--PLGILTNLDELSLNGNQL 229
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 104 ALLQLHRLTYLDLSLNNFSG-SPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQH 162
L L LT LDL+ N S +P+ LTKL+ L L + P L L+AL +
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPL----SGLTKLTELKLGANQISNISP--LAGLTALTN 287
Query: 163 LDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLP 222
L+L+ N L ++ +S+L +LTYL L NN+S + V +L L L+ Y +
Sbjct: 288 LELNENQL---EDISPISNLKNLTYLTLYFNNISD----ISPVSSLTKLQRLFFYNNKVS 340
Query: 223 PI 224
+
Sbjct: 341 DV 342
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 280 AFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLK 339
A + S+ L +SN+ P N+ +L L+IS NK+ I L++ ++L+
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD-----ISVLAKLTNLE 198
Query: 340 ELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372
L NN+++ T +G ++ L LSLNGN L
Sbjct: 199 SLIATNNQISDIT--PLGILTNLDELSLNGNQL 229
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 104 ALLQLHRLTYLDLSLNNFSG-SPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQH 162
L L LT LDL+ N S +P+ LTKL+ L L + P L L+AL +
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPL----SGLTKLTELKLGANQISNISP--LAGLTALTN 287
Query: 163 LDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLP 222
L+L+ N L ++ +S+L +LTYL L NN+S + V +L L L+ Y +
Sbjct: 288 LELNENQL---EDISPISNLKNLTYLTLYFNNISD----ISPVSSLTKLQRLFFYNNKVS 340
Query: 223 PI 224
+
Sbjct: 341 DV 342
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 280 AFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLK 339
A + S+ L +SN+ P N+ +L L+IS NK+ I L++ ++L+
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD-----ISVLAKLTNLE 198
Query: 340 ELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372
L NN+++ T +G ++ L LSLNGN L
Sbjct: 199 SLIATNNQISDIT--PLGILTNLDELSLNGNQL 229
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 10/94 (10%)
Query: 104 ALLQLHRLTYLDLSLNNFSG-SPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQH 162
L L LT LDL+ N S +P+ LTKL+ L L + P L L+AL +
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPL----SGLTKLTELKLGANQISNISP--LAGLTALTN 287
Query: 163 LDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLS 196
L+L+ N L ++ +S+L +LTYL L NN+S
Sbjct: 288 LELNENQL---EDISPISNLKNLTYLTLYFNNIS 318
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 98 RGTISPALLQLHRLTYLDLSLN--NFSGSPIPEFIGSLTKLSYLDLSFAEFEGPI--PSH 153
+G+IS + L L+YLDLS N +FSG +G+ L +LDLS F G I ++
Sbjct: 339 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT-NSLRHLDLS---FNGAIIMSAN 394
Query: 154 LGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNN 194
L LQHLD + L L L YLD+ N
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 59/143 (41%), Gaps = 26/143 (18%)
Query: 86 EIQPIDFDSFPL-RGTISPALLQLHRLTYLDLSL------------------------NN 120
E+Q +DF L R T A L L +L YLD+S N+
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459
Query: 121 FSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLS 180
F + + + T L++LDLS + E L LQ L++S N+L + + +
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY-N 518
Query: 181 HLSSLTYLDLGSNNLSRSTDWLQ 203
L SL+ LD N + S LQ
Sbjct: 519 QLYSLSTLDCSFNRIETSKGILQ 541
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 98 RGTISPALLQLHRLTYLDLSLN--NFSGSPIPEFIGSLTKLSYLDLSFAEFEGPI--PSH 153
+G+IS + L L+YLDLS N +FSG +G+ L +LDLS F G I ++
Sbjct: 334 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT-NSLRHLDLS---FNGAIIMSAN 389
Query: 154 LGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNN 194
L LQHLD + L L L YLD+ N
Sbjct: 390 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 430
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 59/143 (41%), Gaps = 26/143 (18%)
Query: 86 EIQPIDFDSFPL-RGTISPALLQLHRLTYLDLSL------------------------NN 120
E+Q +DF L R T A L L +L YLD+S N+
Sbjct: 395 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 454
Query: 121 FSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLS 180
F + + + T L++LDLS + E L LQ L++S N+L + + +
Sbjct: 455 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY-N 513
Query: 181 HLSSLTYLDLGSNNLSRSTDWLQ 203
L SL+ LD N + S LQ
Sbjct: 514 QLYSLSTLDCSFNRIETSKGILQ 536
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 280 AFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLK 339
F + ++++L LA N+ + F + +LT L++S N+L+ PE + + + LK
Sbjct: 128 VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGV--FDKLTQLK 184
Query: 340 ELYLENNRLNGFTNNSIGQMSKLRTLSLNGN 370
+L L N+L + +++ L+ + L+ N
Sbjct: 185 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 280 AFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLK 339
F + ++ L L N+ + F + +LT LN++ N+L+ P+ + + ++L
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGV--FDKLTNLT 160
Query: 340 ELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372
EL L N+L ++++L+ L L N L
Sbjct: 161 ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 25/107 (23%)
Query: 104 ALLQLHRLTYLDLSLNNFSGSP----------------------IPEFI-GSLTKLSYLD 140
AL +L LTYL L+ N P +P+ + LT L+YL+
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 141 LSFAEFEGPIPSHLGNLSALQHLDLSLNHLFS--AGNLDWLSHLSSL 185
L+ + + L+ L LDLS N L S G D L+ L L
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 111 LTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFE 147
L +LDLS N+F P+ + G+LTKL++L LS A+F
Sbjct: 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 280 AFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLK 339
F + ++ L L N+ + F + +LT L + N+L+ P+ + + ++L
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQS-LPKGV--FDKLTNLT 160
Query: 340 ELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372
L L+NN+L ++++L+ LSLN N L
Sbjct: 161 RLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL 193
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 111 LTYLDLSLNNFSGSPIPEF--IGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLN 168
L +L+L N+F I + + +L +L L LSF + +L + H+DLS N
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510
Query: 169 HLFSAGNLDWLSHLSSLTYLDLGSNNLS 196
L S+ ++ LSHL + YL+L SN++S
Sbjct: 511 RLTSSS-IEALSHLKGI-YLNLASNHIS 536
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 105 LLQLHRLTYLDLSLNNFSGSPIPEF--IGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQH 162
L L ++T L+LS G+P+ I L + LDL+ + P L LS LQ
Sbjct: 87 LKNLTKITELELS-----GNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQV 139
Query: 163 LDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLP 222
L L LN + N+ L+ L++L YL +G+N ++ L + NL LTTL +
Sbjct: 140 LYLDLNQIT---NISPLAGLTNLQYLSIGNNQVND----LTPLANLSKLTTLRADDNKIS 192
Query: 223 PIVP 226
I P
Sbjct: 193 DISP 196
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 3/132 (2%)
Query: 241 LELSENNLTNSIYPWLFNAXXXXXXXXXXXXXXXXXIPVAFKHMVSVSFLGLASNEFEGG 300
L+LS+N S+ P F+ P F+ + ++ +L L N +
Sbjct: 84 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 143
Query: 301 VPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMS 360
D F ++ +LT L + N++ PE + SL L L NR+ ++ +
Sbjct: 144 PDDTFRDLGNLTHLFLHGNRISS-VPE--RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 200
Query: 361 KLRTLSLNGNSL 372
+L TL L N+L
Sbjct: 201 RLMTLYLFANNL 212
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 71/193 (36%), Gaps = 34/193 (17%)
Query: 182 LSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPXXXXXXXXXXXXQFL 241
L+ L LDL N RS D G L L TL+L RC L + P Q+L
Sbjct: 78 LALLEQLDLSDNAQLRSVDPATFHG-LGRLHTLHLDRCGLQELGPGLFRGLAAL---QYL 133
Query: 242 ELSENNLTNSIYPWLFNAXXXXXXXXXXXXXXXXXIPV-AFKHMVSVSFLGLASNEFEGG 300
L +N L +P F+ + +++ L L N
Sbjct: 134 YLQDNALQ--------------------------ALPDDTFRDLGNLTHLFLHGNRISSV 167
Query: 301 VPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMS 360
F + SL L + N++ P ++L R L LYL N L+ ++ +
Sbjct: 168 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR---LMTLYLFANNLSALPTEALAPLR 224
Query: 361 KLRTLSLNGNSLI 373
L+ L LN N +
Sbjct: 225 ALQYLRLNDNPWV 237
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 23/119 (19%)
Query: 277 IPVA-FKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDN-KLRGHFPELIQNLSR 334
+P A F+ +++ L L SN F + L L++SDN +LR P L R
Sbjct: 46 VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 105
Query: 335 F---------------------SSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372
++L+ LYL++N L +++ + L L L+GN +
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 164
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 3/132 (2%)
Query: 241 LELSENNLTNSIYPWLFNAXXXXXXXXXXXXXXXXXIPVAFKHMVSVSFLGLASNEFEGG 300
L+LS+N S+ P F+ P F+ + ++ +L L N +
Sbjct: 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144
Query: 301 VPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMS 360
D F ++ +LT L + N++ PE + SL L L NR+ ++ +
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISS-VPE--RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201
Query: 361 KLRTLSLNGNSL 372
+L TL L N+L
Sbjct: 202 RLMTLYLFANNL 213
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 71/193 (36%), Gaps = 34/193 (17%)
Query: 182 LSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPXXXXXXXXXXXXQFL 241
L+ L LDL N RS D G L L TL+L RC L + P Q+L
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHG-LGRLHTLHLDRCGLQELGPGLFRGLAAL---QYL 134
Query: 242 ELSENNLTNSIYPWLFNAXXXXXXXXXXXXXXXXXIPV-AFKHMVSVSFLGLASNEFEGG 300
L +N L +P F+ + +++ L L N
Sbjct: 135 YLQDNALQ--------------------------ALPDDTFRDLGNLTHLFLHGNRISSV 168
Query: 301 VPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMS 360
F + SL L + N++ P ++L R L LYL N L+ ++ +
Sbjct: 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR---LMTLYLFANNLSALPTEALAPLR 225
Query: 361 KLRTLSLNGNSLI 373
L+ L LN N +
Sbjct: 226 ALQYLRLNDNPWV 238
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 23/119 (19%)
Query: 277 IPVA-FKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDN-KLRGHFPELIQNLSR 334
+P A F+ +++ L L SN F + L L++SDN +LR P L R
Sbjct: 47 VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106
Query: 335 F---------------------SSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372
++L+ LYL++N L +++ + L L L+GN +
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 104 ALLQLHRLTYLDLSLNNFSG-SPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQH 162
L L LT LDL+ N S +P+ LTKL+ L L + P L L+AL +
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPL----SGLTKLTELKLGANQISNISP--LAGLTALTN 286
Query: 163 LDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLP 222
L+L+ N L ++ +S+L +LTYL L NN+S + V +L L L+ Y +
Sbjct: 287 LELNENQL---EDISPISNLKNLTYLTLYFNNISD----ISPVSSLTKLQRLFFYNNKVS 339
Query: 223 PI 224
+
Sbjct: 340 DV 341
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 297 FEGGVPDF--FGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNN 354
F V D N+ +L L+IS NK+ I L++ ++L+ L NN+++ T
Sbjct: 158 FGNQVTDLKPLANLTTLERLDISSNKVSD-----ISVLAKLTNLESLIATNNQISDIT-- 210
Query: 355 SIGQMSKLRTLSLNGNSL 372
+G ++ L LSLNGN L
Sbjct: 211 PLGILTNLDELSLNGNQL 228
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 280 AFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLK 339
FKH+ + L L+ N F + SL L + DN+L P Q S L+
Sbjct: 54 TFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT-VP--TQAFEYLSKLR 110
Query: 340 ELYLENNRLNGFTNNSIGQMSKLRTLSL 367
EL+L NN + + + ++ LR L L
Sbjct: 111 ELWLRNNPIESIPSYAFNRVPSLRRLDL 138
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 285 VSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLR----GHFPELIQNLSRFSSLKE 340
V+ +L L N + D F ++ L +L +S N +R G F L SL
Sbjct: 35 VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGL-------PSLNT 87
Query: 341 LYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372
L L +NRL + +SKLR L L N +
Sbjct: 88 LELFDNRLTTVPTQAFEYLSKLRELWLRNNPI 119
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 10/94 (10%)
Query: 104 ALLQLHRLTYLDLSLNNFSG-SPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQH 162
L L LT LDL+ N S +P+ LTKL+ L L + P L L+AL +
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPL----SGLTKLTELKLGANQISNISP--LAGLTALTN 286
Query: 163 LDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLS 196
L+L+ N L ++ +S+L +LTYL L NN+S
Sbjct: 287 LELNENQL---EDISPISNLKNLTYLTLYFNNIS 317
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 297 FEGGVPDF--FGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNN 354
F V D N+ +L L+IS NK+ I L++ ++L+ L NN+++ T
Sbjct: 158 FGNQVTDLKPLANLTTLERLDISSNKVSD-----ISVLAKLTNLESLIATNNQISDIT-- 210
Query: 355 SIGQMSKLRTLSLNGNSL 372
+G ++ L LSLNGN L
Sbjct: 211 PLGILTNLDELSLNGNQL 228
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 104 ALLQLHRLTYLDLSLNNFSG-SPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQH 162
L L LT LDL+ N S +P+ LTKL+ L L + P L L+AL +
Sbjct: 238 TLASLTNLTDLDLANNQISNLAPL----SGLTKLTELKLGANQISNISP--LAGLTALTN 291
Query: 163 LDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLP 222
L+L+ N L ++ +S+L +LTYL L NN+S + V +L L L+ Y +
Sbjct: 292 LELNENQL---EDISPISNLKNLTYLTLYFNNISD----ISPVSSLTKLQRLFFYNNKVS 344
Query: 223 PI 224
+
Sbjct: 345 DV 346
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 297 FEGGVPDF--FGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNN 354
F V D N+ +L L+IS NK+ I L++ ++L+ L NN+++ T
Sbjct: 163 FGNQVTDLKPLANLTTLERLDISSNKVSD-----ISVLAKLTNLESLIATNNQISDIT-- 215
Query: 355 SIGQMSKLRTLSLNGNSL 372
+G ++ L LSLNGN L
Sbjct: 216 PLGILTNLDELSLNGNQL 233
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 280 AFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLK 339
FKH+ + L L+ N F + SL L + DN+L P Q S L+
Sbjct: 54 TFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT-VP--TQAFEYLSKLR 110
Query: 340 ELYLENNRLNGFTNNSIGQMSKLRTLSL 367
EL+L NN + + + ++ LR L L
Sbjct: 111 ELWLRNNPIESIPSYAFNRVPSLRRLDL 138
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 285 VSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLR----GHFPELIQNLSRFSSLKE 340
V+ +L L N + D F ++ L +L +S N +R G F L SL
Sbjct: 35 VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGL-------PSLNT 87
Query: 341 LYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372
L L +NRL + +SKLR L L N +
Sbjct: 88 LELFDNRLTTVPTQAFEYLSKLRELWLRNNPI 119
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 10/94 (10%)
Query: 104 ALLQLHRLTYLDLSLNNFSG-SPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQH 162
L L LT LDL+ N S +P+ LTKL+ L L + P L L+AL +
Sbjct: 237 TLASLTNLTDLDLANNQISNLAPL----SGLTKLTELKLGANQISNISP--LAGLTALTN 290
Query: 163 LDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLS 196
L+L+ N L ++ +S+L +LTYL L NN+S
Sbjct: 291 LELNENQL---EDISPISNLKNLTYLTLYFNNIS 321
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 297 FEGGVPDF--FGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNN 354
F V D N+ +L L+IS NK+ I L++ ++L+ L NN+++ T
Sbjct: 162 FGNQVTDLKPLANLTTLERLDISSNKVSD-----ISVLAKLTNLESLIATNNQISDIT-- 214
Query: 355 SIGQMSKLRTLSLNGNSL 372
+G ++ L LSLNGN L
Sbjct: 215 PLGILTNLDELSLNGNQL 232
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 280 AFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKL----RGHFPELIQNLSRF 335
+FKH+ + L L+ N F + +L L + DN+L G F L
Sbjct: 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYL------- 135
Query: 336 SSLKELYLENNRLNGFTNNSIGQMSKLRTLSL 367
S LKEL+L NN + + + ++ LR L L
Sbjct: 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 156 NLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSN 193
+L +L+HLDLS NHL S + W LSSL YL+L N
Sbjct: 98 SLGSLEHLDLSDNHLSSLSS-SWFGPLSSLKYLNLMGN 134
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 156 NLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSN 193
+L +L+HLDLS NHL S + W LSSL YL+L N
Sbjct: 72 SLGSLEHLDLSDNHLSSLSS-SWFGPLSSLKYLNLMGN 108
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 278 PVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKL----RGHFPELIQNLS 333
P F H+V++ L SN+ F + LT L+++DN L RG F L
Sbjct: 50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNL----- 104
Query: 334 RFSSLKELYLENN 346
SL +YL NN
Sbjct: 105 --KSLTHIYLYNN 115
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 278 PVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSS 337
P AF ++ ++ LGL SN + F + +LT L+IS+NK+ + Q+L +
Sbjct: 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL---YN 129
Query: 338 LKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372
LK L + +N L ++ + ++ L L+L +L
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 25/135 (18%)
Query: 86 EIQPIDFDSFPLRG----TISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDL 141
+I D S L+G ++ LQ HR + D+S F T+L LDL
Sbjct: 234 DIDDEDISSAMLKGLCEMSVESLNLQEHRFS--DISSTTFQ---------CFTQLQELDL 282
Query: 142 SFAEFEGPIPSHLGNLSALQHLDLSLNHL-----FSAGNLDWLSHLSSLTYLDLGSNNLS 196
+ +G +PS + L+ L+ L LS+NH SA N L+HL Y+ L
Sbjct: 283 TATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHL----YIRGNVKKLH 337
Query: 197 RSTDWLQVVGNLPLL 211
L+ +GNL L
Sbjct: 338 LGVGCLEKLGNLQTL 352
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 277 IPVA-FKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDN-KLR----------GH 324
+P A F+ +++ L L SN G F + L L++SDN +LR GH
Sbjct: 46 VPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGH 105
Query: 325 F----------PELIQNLSR-FSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372
EL L R ++L+ LYL++N L +N+ + L L L+GN +
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 287 VSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENN 346
V+ L L N+F VP N LT++++S+N++ Q+ S + L L L N
Sbjct: 33 VTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSN---QSFSNMTQLLTLILSYN 88
Query: 347 RLNGFTNNSIGQMSKLRTLSLNGNSL 372
RL + + LR LSL+GN +
Sbjct: 89 RLRCIPPRTFDGLKSLRLLSLHGNDI 114
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 58/152 (38%), Gaps = 30/152 (19%)
Query: 68 CKWTGVGCSNRTGHVIKLEIQPIDFDSFPLRG---TISPALLQLHR-LTYLDLSLNNFSG 123
C T V CSN+ V+ I P D L G T+ P L ++ LT +DLS N S
Sbjct: 10 CLDTVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST 68
Query: 124 SPIPEFIGSLTKLSYLDLSFAEFEGPIP------------------------SHLGNLSA 159
F ++T+L L LS+ P +LSA
Sbjct: 69 LSNQSF-SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA 127
Query: 160 LQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLG 191
L HL + N L+ N+ WLS Y + G
Sbjct: 128 LSHLAIGANPLYCDCNMQWLSDWVKSEYKEPG 159
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 277 IPVAFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFS 336
+P + ++ + L++N F NM L L +S N+LR P L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGL---K 102
Query: 337 SLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372
SL+ L L N ++ + +S L L++ N L
Sbjct: 103 SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
Query: 186 TYLDLGSNNLSR-STDWLQVVGNLPLLTTLYLYRCHLPPIVPXXXXXXXXXXXXQFLELS 244
T L L N L R S+D L G LP L L L R L I P Q L+L
Sbjct: 32 TELLLNDNELGRISSDGL--FGRLPHLVKLELKRNQLTGIEPNAFEGASHI---QELQLG 86
Query: 245 ENNLTNSIYPWLFNAXXXXXXXXXXXXXXXXXIPVAFKHMVSVSFLGLASNEF 297
EN + I +F +P +F+H+ S++ L LASN F
Sbjct: 87 ENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 304 FFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLNGFTNNSIGQMSKLR 363
FG + L L + N+L G P + S ++EL L N++ +N + +L+
Sbjct: 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASH---IQELQLGENKIKEISNKMFLGLHQLK 105
Query: 364 TLSLNGNSL 372
TL+L N +
Sbjct: 106 TLNLYDNQI 114
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 277 IPVA-FKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRF 335
+PV F + ++ L L +N+ F + L L + NKL EL + + R
Sbjct: 79 LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT----ELPRGIERL 134
Query: 336 SSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGN 370
+ L L L+ N+L + + ++S L L GN
Sbjct: 135 THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 155 GNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSN 193
+L +L+HLDLS N+L + + W LSSLT+L+L N
Sbjct: 71 SSLGSLEHLDLSYNYLSNLSS-SWFKPLSSLTFLNLLGN 108
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 154 LGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSN 193
+L +L+HLDLS N+L + + W LSSLT+L+L N
Sbjct: 96 FSSLGSLEHLDLSYNYLSNLSS-SWFKPLSSLTFLNLLGN 134
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 130 IGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLD 189
+ +L++L++L++ + + + +L+ L+ L++ N + L+ LS L+SL +L
Sbjct: 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKXLNVGSNQISDISVLNNLSQLNSL-FL- 294
Query: 190 LGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVP 226
NN + +V+G L LTTL+L + H+ I P
Sbjct: 295 ---NNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 290 LGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLN 349
L L+ N+ + +P + +LT+L++S N+L P + L L+ELYL+ N L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LP--LGALRGLGELQELYLKGNELK 137
Query: 350 GFTNNSIGQMSKLRTLSLNGNSL 372
+ KL LSL N L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQL 160
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 290 LGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLN 349
L L+ N+ + +P + +LT+L++S N+L P + L L+ELYL+ N L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LP--LGALRGLGELQELYLKGNELK 137
Query: 350 GFTNNSIGQMSKLRTLSLNGNSL 372
+ KL LSL N L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQL 160
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 133 LTKLSYLDLSFAEFEGPIPSHL-GNLSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLG 191
LT L L+LS F G I S + NL L+ LDLS NH+ + G+ +L L +L L L
Sbjct: 322 LTHLLKLNLS-QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG-LPNLKELALD 379
Query: 192 SNNLSRSTDWLQVVGNLPLLTTLYL----YRCHLPPI 224
+N L D + L L ++L + C P I
Sbjct: 380 TNQLKSVPD--GIFDRLTSLQKIWLHTNPWDCSCPRI 414
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 280 AFKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLK 339
F H + L LA NE + F + L LN+S N L + +NL + L+
Sbjct: 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK---LE 350
Query: 340 ELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372
L L N + + S + L+ L+L+ N L
Sbjct: 351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 290 LGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLN 349
L L+ N+ + +P + +LT+L++S N+L P + L L+ELYL+ N L
Sbjct: 83 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LP--LGALRGLGELQELYLKGNELK 138
Query: 350 GFTNNSIGQMSKLRTLSLNGNSL 372
+ KL LSL N+L
Sbjct: 139 TLPPGLLTPTPKLEKLSLANNNL 161
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 290 LGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLN 349
L L+ N+ + +P + +LT+L++S N+L P + L L+ELYL+ N L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LP--LGALRGLGELQELYLKGNELK 137
Query: 350 GFTNNSIGQMSKLRTLSLNGNSL 372
+ KL LSL N L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQL 160
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 290 LGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLN 349
L L+ N+ + +P + +LT+L++S N+L P + L L+ELYL+ N L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LP--LGALRGLGELQELYLKGNELK 137
Query: 350 GFTNNSIGQMSKLRTLSLNGNSL 372
+ KL LSL N L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQL 160
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 290 LGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLN 349
L L+ N+ + +P + +LT+L++S N+L P + L L+ELYL+ N L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LP--LGALRGLGELQELYLKGNELK 137
Query: 350 GFTNNSIGQMSKLRTLSLNGNSL 372
+ KL LSL N L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNDL 160
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 290 LGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLN 349
L L+ N+ + +P + +LT+L++S N+L P + L L+ELYL+ N L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LP--LGALRGLGELQELYLKGNELK 137
Query: 350 GFTNNSIGQMSKLRTLSLNGNSL 372
+ KL LSL N+L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNL 160
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 290 LGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLN 349
L L+ N+ + +P + +LT+L++S N+L P + L L+ELYL+ N L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LP--LGALRGLGELQELYLKGNELK 137
Query: 350 GFTNNSIGQMSKLRTLSLNGNSL 372
+ KL LSL N+L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNL 160
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 290 LGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLN 349
L L+ N+ + +P + +LT+L++S N+L P + L L+ELYL+ N L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LP--LGALRGLGELQELYLKGNELK 137
Query: 350 GFTNNSIGQMSKLRTLSLNGNSL 372
+ KL LSL N+L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNL 160
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 127 PEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSAGNLDWLSHLSSLT 186
P SLT+L+YL+L+ + L+ L HL L +N L S + +L SLT
Sbjct: 57 PGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIP-MGVFDNLKSLT 115
Query: 187 YLDLGSN 193
++ L +N
Sbjct: 116 HIYLFNN 122
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 290 LGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKELYLENNRLN 349
L L+ N+ + +P + +LT+L++S N+L P + L L+ELYL+ N L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LP--LGALRGLGELQELYLKGNELK 137
Query: 350 GFTNNSIGQMSKLRTLSLNGNSL 372
+ KL LSL N+L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNL 160
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 160 LQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSR 197
L LDLS N+L GN + S+L SL YL L NN+ R
Sbjct: 250 LTQLDLSYNNLHDVGNGSF-SYLPSLRYLSLEYNNIQR 286
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 157 LSALQHLDLSLNHLFSAGNLDWLSHLSSLTYLDLGSNNLSRSTDW-LQVVGNLPLLTTLY 215
L L L L+ N L G+LD L+ L SLTYL + N ++ + L V+ +P + L
Sbjct: 87 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146
Query: 216 LYRCHL 221
+ L
Sbjct: 147 FQKVKL 152
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 14/90 (15%)
Query: 110 RLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNH 169
R+ YLD+S+ F+ +L YLDLS + I H L+HLDLS N
Sbjct: 56 RIQYLDISVFKFNQ-----------ELEYLDLSHNKL-VKISCHPT--VNLKHLDLSFNA 101
Query: 170 LFSAGNLDWLSHLSSLTYLDLGSNNLSRST 199
+ ++S L +L L + +L +S+
Sbjct: 102 FDALPICKEFGNMSQLKFLGLSTTHLEKSS 131
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 281 FKHMVSVSFLGLASNEFEGGVPDFFGNMCSLTMLNISDNKLRGHFPELIQNLSRFSSLKE 340
F + ++ + SN+ FG M L LN++ N+L+ P+ I R +SL++
Sbjct: 166 FDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKS-VPDGI--FDRLTSLQK 222
Query: 341 LYLENN 346
++L N
Sbjct: 223 IWLHTN 228
>pdb|2XU0|A Chain A, Crystal Structure Of The Nts-Dbl1(Alpha-1) Domain Of The
Plasmodium Falciparum Membrane Protein 1 (Pfemp1) From
The Varo Strain
Length = 487
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 291 GLASNEFEGGVPDFFGNMCSLTML---NISDNKLRGHFPELIQNLSRFSSLKELYLENNR 347
L+S EG D GN C+L L NI G P + +RF E Y +++
Sbjct: 60 ALSSRYIEGRNSD--GNSCNLDHLFHTNIKTGYNEGRKPCYGREQNRFDENAEAYCNSDK 117
Query: 348 LNGFTNNSIG 357
+ G NN+ G
Sbjct: 118 IRGNENNANG 127
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 336 SSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 372
S L+ LYL +N LN ++ LR LSLN N L
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,705,165
Number of Sequences: 62578
Number of extensions: 381200
Number of successful extensions: 1518
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 1158
Number of HSP's gapped (non-prelim): 298
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)